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Sample records for determining precise oligosaccharidic

  1. A simple micro-method for determining precise oligosaccharidic specificity of mannose-binding lectins.

    PubMed

    Debray, Henri; Coddeville, Bernadette; Bomfim, Liezelotte R; Ramos, Márcio V

    2009-12-01

    A simple and inexpensive method was developed to rapidly define the specificity of mannose-specific lectins toward oligomannoside-type structures. The method involved the interaction of a mixture of N-[(14)C]-acetylated glycoasparagines, prepared by exhaustive pronase digestion of bovine pancreatic ribonuclease B and N-[(14)C]-acetylation with [(14)C]-acetic anhydride and containing all the possible oligomannoside-type N-glycans, with the lectin immobilized on Sepharose-4B. After exhaustive desalting, the obtained fractions were separated by high-performance thin-layer chromatography on silica gel plates and visualized by autoradiography with intensifying screen. As an example of the usefulness of this method, the fine specificity of artocarpin, the mannose-specificity lectin isolated from seeds of jackfruit (Artocarpus integrifolia) toward oligomannoside-type structures is presented. On the basis of such a determination, the best oligomannosidic ligand recognized by a mannose-specific lectin can be selected for studies of crystal structures of the lectin in complex with the defined ligand. Furthermore, some of these immobilized lectins, after definition of their precise specificities with the method, could represent valuable tools for the fractionation and characterization of oligomannose-type structures, present in complex mixtures.

  2. Determining the solution conformational entropy of oligosaccharides by SEC with on-line viscometry detection.

    PubMed

    Morris, Mallory J; Striegel, André M

    2014-06-15

    Introduced here is a method for determining the solution conformational entropy of oligosaccharides (-ΔS) that relies on the on-line coupling of size-exclusion chromatography (SEC), an entropically-controlled separation technique, and differential viscometry (VISC). Results from this SEC/VISC method were compared, for the same injections of the same sample dissolutions and under identical solvent/temperature conditions, to results from a benchmark SEC/differential refractometry (SEC/DRI) method which has been applied successfully over the last decade to determining -ΔS of a variety of mono-, di-, and oligosaccharides. The accuracy (as compared to SEC/DRI) and precision of SEC/VISC were found to be excellent, as was the sensitivity of the viscometer in the oligomeric region. The experiments presented here contrast three sets of (1→4)-β-d-oligosaccharides, namely manno-, cello-, and N-acetylchitooligosaccharides of degree of polymerization (DP) 2 through 6. For each series, the dependence of -ΔS on DP was found to be monotonic while, between series, differences at each DP could be ascribed to either the additional degrees of freedom imparted by large, multi-atomic substituent groups, or to the presence or absence of additional intramolecular hydrogen bonds, depending on the axial versus equatorial arrangement of particular hydroxyl groups. An hypothesis is advanced to explain the unexpectedly high sensitivity of viscometric detection for low-molar-mass analytes. The method presented can be extended to the analysis of oligosaccharides other than those studied here.

  3. Precise Orbit Determination for ALOS

    NASA Technical Reports Server (NTRS)

    Nakamura, Ryo; Nakamura, Shinichi; Kudo, Nobuo; Katagiri, Seiji

    2007-01-01

    The Advanced Land Observing Satellite (ALOS) has been developed to contribute to the fields of mapping, precise regional land coverage observation, disaster monitoring, and resource surveying. Because the mounted sensors need high geometrical accuracy, precise orbit determination for ALOS is essential for satisfying the mission objectives. So ALOS mounts a GPS receiver and a Laser Reflector (LR) for Satellite Laser Ranging (SLR). This paper deals with the precise orbit determination experiments for ALOS using Global and High Accuracy Trajectory determination System (GUTS) and the evaluation of the orbit determination accuracy by SLR data. The results show that, even though the GPS receiver loses lock of GPS signals more frequently than expected, GPS-based orbit is consistent with SLR-based orbit. And considering the 1 sigma error, orbit determination accuracy of a few decimeters (peak-to-peak) was achieved.

  4. Precision orbit determination for Topex

    NASA Technical Reports Server (NTRS)

    Tapley, B. D.; Schutz, B. E.; Ries, J. C.; Shum, C. K.

    1990-01-01

    The ability of radar altimeters to measure the distance from a satellite to the ocean surface with a precision of the order of 2 cm imposes unique requirements for the orbit determination accuracy. The orbit accuracy requirements will be especially demanding for the joint NASA/CNES Ocean Topography Experiment (Topex/Poseidon). For this mission, a radial orbit accuracy of 13 centimeters will be required for a mission period of three to five years. This is an order of magnitude improvement in the accuracy achieved during any previous satellite mission. This investigation considers the factors which limit the orbit accuracy for the Topex mission. Particular error sources which are considered include the geopotential, the radiation pressure and the atmospheric drag model.

  5. Determination Trial of Nondigestible Oligosaccharide in Processed Foods by Improved AOAC Method 2009.01 Using Porcine Small Intestinal Enzyme.

    PubMed

    Tanabe, Kenichi; Nakamura, Sadako; Omagari, Katsuhisa; Oku, Tsuneyuki

    2015-06-24

    We have previously shown that the Association of Official Analytical Chemists' (AOAC) methods 2001.03 and 2009.01 were not able to measure accurately nondigestible oligosaccharide because they are incapable of hydrolyzing digestible oligosaccharide, leading to overestimation of nondigestible oligosaccharide. Subsequently, we have proposed improved AOAC methods 2001.03 and 2009.01 using porcine small intestinal disaccharidases instead of amyloglucosidase. In the present study, we tried to determine nondigestible oligosaccharide in marketed processed foods using the improved AOAC method (improved method), and the results were compared with those by AOAC method 2009.01. In the improved method, the percentages of recovery of fructooligosaccharide, galactooligosaccharide, and raffinose to the label of processed food were 103.0, 89.9, and 102.1%, respectively. However, the AOAC method 2009.01 overestimated >30% of the quantity of nondigestible oligosaccharide in processed foods, because the margin of error was accepted ±20% on the contents of nondigestible oligosaccharides in processed foods for Japanese nutrition labeling, the improved method thus provided accurate quantification of nondigestible oligosaccharides in processed food and allows a comprehensive determination of nondigestible oligosaccharides.

  6. Accuracy and precision of manual baseline determination.

    PubMed

    Jirasek, A; Schulze, G; Yu, M M L; Blades, M W; Turner, R F B

    2004-12-01

    Vibrational spectra often require baseline removal before further data analysis can be performed. Manual (i.e., user) baseline determination and removal is a common technique used to perform this operation. Currently, little data exists that details the accuracy and precision that can be expected with manual baseline removal techniques. This study addresses this current lack of data. One hundred spectra of varying signal-to-noise ratio (SNR), signal-to-baseline ratio (SBR), baseline slope, and spectral congestion were constructed and baselines were subtracted by 16 volunteers who were categorized as being either experienced or inexperienced in baseline determination. In total, 285 baseline determinations were performed. The general level of accuracy and precision that can be expected for manually determined baselines from spectra of varying SNR, SBR, baseline slope, and spectral congestion is established. Furthermore, the effects of user experience on the accuracy and precision of baseline determination is estimated. The interactions between the above factors in affecting the accuracy and precision of baseline determination is highlighted. Where possible, the functional relationships between accuracy, precision, and the given spectral characteristic are detailed. The results provide users of manual baseline determination useful guidelines in establishing limits of accuracy and precision when performing manual baseline determination, as well as highlighting conditions that confound the accuracy and precision of manual baseline determination.

  7. In vitro determination of prebiotic properties of oligosaccharides derived from an orange juice manufacturing by-product stream.

    PubMed

    Manderson, K; Pinart, M; Tuohy, K M; Grace, W E; Hotchkiss, A T; Widmer, W; Yadhav, M P; Gibson, G R; Rastall, R A

    2005-12-01

    Fermentation properties of oligosaccharides derived from orange peel pectin were assessed in mixed fecal bacterial culture. The orange peel oligosaccharide fraction contained glucose in addition to rhamnogalacturonan and xylogalacturonan pectic oligosaccharides. Twenty-four-hour, temperature- and pH-controlled, stirred anaerobic fecal batch cultures were used to determine the effects that oligosaccharides derived from orange products had on the composition of the fecal microbiota. The effects were measured through fluorescent in situ hybridization to determine changes in bacterial populations, fermentation end products were analyzed by high-performance liquid chromatography to assess short-chain fatty acid concentrations, and subsequently, a prebiotic index (PI) was determined. Pectic oligosaccharides (POS) were able to increase the bifidobacterial and Eubacterium rectale numbers, albeit resulting in a lower prebiotic index than that from fructo-oligosaccharide metabolism. Orange albedo maintained the growth of most bacterial populations and gave a PI similar to that of soluble starch. Fermentation of POS resulted in an increase in the Eubacterium rectale numbers and concomitantly increased butyrate production. In conclusion, this study has shown that POS can have a beneficial effect on the fecal microflora; however, a classical prebiotic effect was not found. An increase in the Eubacterium rectale population was found, and butyrate levels increased, which is of potential benefit to the host.

  8. In Vitro Determination of Prebiotic Properties of Oligosaccharides Derived from an Orange Juice Manufacturing By-Product Stream

    PubMed Central

    Manderson, K.; Pinart, M.; Tuohy, K. M.; Grace, W. E.; Hotchkiss, A. T.; Widmer, W.; Yadhav, M. P.; Gibson, G. R.; Rastall, R. A.

    2005-01-01

    Fermentation properties of oligosaccharides derived from orange peel pectin were assessed in mixed fecal bacterial culture. The orange peel oligosaccharide fraction contained glucose in addition to rhamnogalacturonan and xylogalacturonan pectic oligosaccharides. Twenty-four-hour, temperature- and pH-controlled, stirred anaerobic fecal batch cultures were used to determine the effects that oligosaccharides derived from orange products had on the composition of the fecal microbiota. The effects were measured through fluorescent in situ hybridization to determine changes in bacterial populations, fermentation end products were analyzed by high-performance liquid chromatography to assess short-chain fatty acid concentrations, and subsequently, a prebiotic index (PI) was determined. Pectic oligosaccharides (POS) were able to increase the bifidobacterial and Eubacterium rectale numbers, albeit resulting in a lower prebiotic index than that from fructo-oligosaccharide metabolism. Orange albedo maintained the growth of most bacterial populations and gave a PI similar to that of soluble starch. Fermentation of POS resulted in an increase in the Eubacterium rectale numbers and concomitantly increased butyrate production. In conclusion, this study has shown that POS can have a beneficial effect on the fecal microflora; however, a classical prebiotic effect was not found. An increase in the Eubacterium rectale population was found, and butyrate levels increased, which is of potential benefit to the host. PMID:16332825

  9. Precision orbit determination of altimetric satellites

    NASA Astrophysics Data System (ADS)

    Shum, C. K.; Ries, John C.; Tapley, Byron D.

    1994-11-01

    The ability to determine accurate global sea level variations is important to both detection and understanding of changes in climate patterns. Sea level variability occurs over a wide spectrum of temporal and spatial scales, and precise global measurements are only recently possible with the advent of spaceborne satellite radar altimetry missions. One of the inherent requirements for accurate determination of absolute sea surface topography is that the altimetric satellite orbits be computed with sub-decimeter accuracy within a well defined terrestrial reference frame. SLR tracking in support of precision orbit determination of altimetric satellites is significant. Recent examples are the use of SLR as the primary tracking systems for TOPEX/Poseidon and for ERS-1 precision orbit determination. The current radial orbit accuracy for TOPEX/Poseidon is estimated to be around 3-4 cm, with geographically correlated orbit errors around 2 cm. The significance of the SLR tracking system is its ability to allow altimetric satellites to obtain absolute sea level measurements and thereby provide a link to other altimetry measurement systems for long-term sea level studies. SLR tracking allows the production of precise orbits which are well centered in an accurate terrestrial reference frame. With proper calibration of the radar altimeter, these precise orbits, along with the altimeter measurements, provide long term absolute sea level measurements. The U.S. Navy's Geosat mission is equipped with only Doppler beacons and lacks laser retroreflectors. However, its orbits, and even the Geosat orbits computed using the available full 40-station Tranet tracking network, yield orbits with significant north-south shifts with respect to the IERS terrestrial reference frame. The resulting Geosat sea surface topography will be tilted accordingly, making interpretation of long-term sea level variability studies difficult.

  10. Attentional priority determines working memory precision.

    PubMed

    Klyszejko, Zuzanna; Rahmati, Masih; Curtis, Clayton E

    2014-12-01

    Visual working memory is a system used to hold information actively in mind for a limited time. The number of items and the precision with which we can store information has limits that define its capacity. How much control do we have over the precision with which we store information when faced with these severe capacity limitations? Here, we tested the hypothesis that rank-ordered attentional priority determines the precision of multiple working memory representations. We conducted two psychophysical experiments that manipulated the priority of multiple items in a two-alternative forced choice task (2AFC) with distance discrimination. In Experiment 1, we varied the probabilities with which memorized items were likely to be tested. To generalize the effects of priority beyond simple cueing, in Experiment 2, we manipulated priority by varying monetary incentives contingent upon successful memory for items tested. Moreover, we illustrate our hypothesis using a simple model that distributed attentional resources across items with rank-ordered priorities. Indeed, we found evidence in both experiments that priority affects the precision of working memory in a monotonic fashion. Our results demonstrate that representations of priority may provide a mechanism by which resources can be allocated to increase the precision with which we encode and briefly store information.

  11. Attentional priority determines working memory precision.

    PubMed

    Klyszejko, Zuzanna; Rahmati, Masih; Curtis, Clayton E

    2014-12-01

    Visual working memory is a system used to hold information actively in mind for a limited time. The number of items and the precision with which we can store information has limits that define its capacity. How much control do we have over the precision with which we store information when faced with these severe capacity limitations? Here, we tested the hypothesis that rank-ordered attentional priority determines the precision of multiple working memory representations. We conducted two psychophysical experiments that manipulated the priority of multiple items in a two-alternative forced choice task (2AFC) with distance discrimination. In Experiment 1, we varied the probabilities with which memorized items were likely to be tested. To generalize the effects of priority beyond simple cueing, in Experiment 2, we manipulated priority by varying monetary incentives contingent upon successful memory for items tested. Moreover, we illustrate our hypothesis using a simple model that distributed attentional resources across items with rank-ordered priorities. Indeed, we found evidence in both experiments that priority affects the precision of working memory in a monotonic fashion. Our results demonstrate that representations of priority may provide a mechanism by which resources can be allocated to increase the precision with which we encode and briefly store information. PMID:25240420

  12. Degradation of Misfolded Endoplasmic Reticulum Glycoproteins in Saccharomyces cerevisiae Is Determined by a Specific Oligosaccharide Structure

    PubMed Central

    Jakob, Claude A.; Burda, Patricie; Roth, Jürgen; Aebi, Markus

    1998-01-01

    In Saccharomyces cerevisiae, transfer of N-linked oligosaccharides is immediately followed by trimming of ER-localized glycosidases. We analyzed the influence of specific oligosaccharide structures for degradation of misfolded carboxypeptidase Y (CPY). By studying the trimming reactions in vivo, we found that removal of the terminal α1,2 glucose and the first α1,3 glucose by glucosidase I and glucosidase II respectively, occurred rapidly, whereas mannose cleavage by mannosidase I was slow. Transport and maturation of correctly folded CPY was not dependent on oligosaccharide structure. However, degradation of misfolded CPY was dependent on specific trimming steps. Degradation of misfolded CPY with N-linked oligosaccharides containing glucose residues was less efficient compared with misfolded CPY bearing the correctly trimmed Man8GlcNAc2 oligosaccharide. Reduced rate of degradation was mainly observed for mis- folded CPY bearing Man6GlcNAc2, Man7GlcNAc2 and Man9GlcNAc2 oligosaccharides, whereas Man8GlcNAc2 and, to a lesser extent, Man5GlcNAc2 oligosaccharides supported degradation. These results suggest a role for the Man8GlcNAc2 oligosaccharide in the degradation process. They may indicate the presence of a Man8GlcNAc2-binding lectin involved in targeting of misfolded glycoproteins to degradation in S. cerevisiae. PMID:9732283

  13. Precision orbit determination software validation experiment

    NASA Technical Reports Server (NTRS)

    Schutz, B. E.; Tapley, B. D.; Eanes, R. J.; Marsh, J. G.; Williamson, R. G.; Martin, T. V.

    1980-01-01

    This paper presents the results of an experiment which was designed to ascertain the level of agreement between GEODYN and UTOPIA, two completely independent computer programs used for precision orbit determination, and to identify the sources which limit the agreement. For a limited set of models and a seven-day data set arc length, the altitude components of the ephemeris obtained by the two programs agree at the sub-centimeter level throughout the arc.

  14. Precise determination of the distances of galaxies

    NASA Technical Reports Server (NTRS)

    Tammann, G. A.

    1979-01-01

    The use of the Space Telescope in the determination of the distances of galaxies is examined. The Space Telescope can check the local extragalactic distance scale to within 10-15 percent. The determination of relative distances of cosmic standard candles, viz. brightest M-supergiants and SNe I in E galaxies, is discussed. The M-supergiants map the velocity field out to v sub o approx. 3000 km s(-1) thus providing a firm basis for the determination of H sub o (global) from local distances, and the possibility to derive precise distances of all nearby field galaxies from their recession velocities. Photometry of the SNe I out to z = 0.5 leads to a direct determination of q sub o via the Hubble diagram, and the form of their light curves offers a fundamental test on the nature of redshifts. Other calculations are discussed.

  15. Accelerometers for Precise GNSS Orbit Determination

    NASA Astrophysics Data System (ADS)

    Hugentobler, Urs; Schlicht, Anja

    2016-07-01

    The solar radiation pressure is the largest non-gravitational acceleration on GNSS satellites limiting the accuracy of precise orbit models. Other non-gravitational accelerations may be thrusts for station keeping maneuvers. Accelerometers measure the motion of a test mass that is shielded against satellite surface forces with respect to a cage that is rigidly connected to the satellite. They can thus be used to measure these difficult-to-model non-gravitational accelerations. Accelerometers however typically show correlated noise as well as a drift of the scaling factors converting measured voltages to accelerations. The scaling thus needs to be regularly calibrated. The presented study is based on several simulated scenarios including orbit determination of accelerometer-equipped Galileo satellites. It shall evaluate different options on how to accommodate accelerometer measurements in the orbit integrator, indicate to what extent currently available accelerometers can be used to improve the modeling of non-gravitational accelerations on GNSS satellites for precise orbit determination, and assess the necessary requirements for an accelerometer that can serve this purpose.

  16. Oligosaccharides in several Philippine indigenous food legumes: determination, localization and removal.

    PubMed

    Revilleza, M J; Mendoza, E M; Raymundo, L C

    1990-01-01

    The oligosaccharide profile of raw mature seeds of seven different legumes indigenous to the Philippines was measured in 70% ethanol extracts of the seeds by thin layer chromatography using HPTLC plates and quantified by a densitometer. Based on the results, the legumes could be ranked according to decreasing oligosaccharide content or flatulence potential as follows: Sam-samping (Clitoria ternatea) greater than hyacinth bean (Dolichos lablab) greater than sabawel (Mucuna pruriens) greater than lima bean (Phaseolus lunatus) greater than swordbean (Canavalia gladiata) greater than rice bean (Vigna umbellata) greater than jack bean (Canavalia ensiformis). Sam-samping had 4.79% total oligosaccharides and hyacinth bean or batao, 3.66%. A jack bean accession had 1.79% oligosaccharides. Simple processing methods were tested to detoxify the oligosaccharides. Soaking the batao seeds had no effect while boiling even resulted in a net 23-31% increase in the levels of raffinose, stachyose and verbascose. On the other hand, two min of dry roasting resulted in complete removal of oligosaccharides whereas germination resulted in about 30-40% decrease after 1 and 2 days, respectively. PMID:2345736

  17. A new chapter in precise orbit determination

    NASA Technical Reports Server (NTRS)

    Yunck, T. P.

    1992-01-01

    A report is presented on the use of GPS receivers on board orbiting spacecraft to determine their orbits with unprecedented accuracy. By placing a GPS receiver aboard a satellite one can observe its true motion and reconstruct its trajectory in great detail without knowledge of the forces acting on it. Only the accuracy of the GPS carrier-phase observable, which can be better than 1 cm for a 1 sec duration observation, ultimately limits 'user orbit' accuracy.

  18. GRAS NRT Precise Orbit Determination: Operational Experience

    NASA Technical Reports Server (NTRS)

    MartinezFadrique, Francisco M.; Mate, Alberto Agueda; Rodriquez-Portugal, Francisco Sancho

    2007-01-01

    EUMETSAT launched the meteorological satellite MetOp-A in October 2006; it is the first of the three satellites that constitute the EUMETSAT Polar System (EPS) space segment. This satellite carries a challenging and innovative instrument, the GNSS Receiver for Atmospheric Sounding (GRAS). The goal of the GRAS instrument is to support the production of atmospheric profiles of temperature and humidity with high accuracy, in an operational context, based on the bending of the GPS signals traversing the atmosphere during the so-called occultation periods. One of the key aspects associated to the data processing of the GRAS instrument is the necessity to describe the satellite motion and GPS receiver clock behaviour with high accuracy and within very strict timeliness limitations. In addition to these severe requirements, the GRAS Product Processing Facility (PPF) must be integrated in the EPS core ground segment, which introduces additional complexity from the data integration and operational procedure points of view. This paper sets out the rationale for algorithm selection and the conclusions from operational experience. It describes in detail the rationale and conclusions derived from the selection and implementation of the algorithms leading to the final orbit determination requirements (0.1 mm/s in velocity and 1 ns in receiver clock error at 1 Hz). Then it describes the operational approach and extracts the ideas and conclusions derived from the operational experience.

  19. Precise and Accurate Density Determination of Explosives Using Hydrostatic Weighing

    SciTech Connect

    B. Olinger

    2005-07-01

    Precise and accurate density determination requires weight measurements in air and water using sufficiently precise analytical balances, knowledge of the densities of air and water, knowledge of thermal expansions, availability of a density standard, and a method to estimate the time to achieve thermal equilibrium with water. Density distributions in pressed explosives are inferred from the densities of elements from a central slice.

  20. Improved DORIS accuracy for precise orbit determination and geodesy

    NASA Technical Reports Server (NTRS)

    Willis, Pascal; Jayles, Christian; Tavernier, Gilles

    2004-01-01

    In 2001 and 2002, 3 more DORIS satellites were launched. Since then, all DORIS results have been significantly improved. For precise orbit determination, 20 cm are now available in real-time with DIODE and 1.5 to 2 cm in post-processing. For geodesy, 1 cm precision can now be achieved regularly every week, making now DORIS an active part of a Global Observing System for Geodesy through the IDS.

  1. Selection of Wavelengths for Optimum Precision in Simultaneous Spectrophotometric Determinations.

    ERIC Educational Resources Information Center

    DiTusa, Michael R.; Schilt, Alfred A.

    1985-01-01

    Although many textbooks include a description of simultaneous determinations employing absorption spectrophotometry and treat the mathematics necessary for analytical quantitations, treatment of analytical wavelength selection has been mostly qualitative. Therefore, a general method for selecting wavelengths for optimum precision in simultaneous…

  2. The GPS based precision orbit determination experiment on TOPEX

    NASA Technical Reports Server (NTRS)

    Melbourne, William G.; Davis, Edgar S.; Yunck, Thomas P.

    1988-01-01

    The objectives of the GPS-based precision orbit determination (POD) experiment on TOPEX are discussed. Problems facing this experiment include the careful design of all network receivers to control uncalibrated systematic group-delay biases and delay variations between channels, and the careful design of both the GPS-antenna-TOPEX satellite interface and the ground antennas to mimimize multipath. Questions of reference frames, geoid recovery, and the application of innovative orbit determination strategies must also be addressed.

  3. Linkage determination of linear oligosaccharides by MS(n) (n > 2) collision-induced dissociation of Z₁ ions in the negative ion mode.

    PubMed

    Konda, Chiharu; Bendiak, Brad; Xia, Yu

    2014-02-01

    Obtaining unambiguous linkage information between sugars in oligosaccharides is an important step in their detailed structural analysis. An approach is described that provides greater confidence in linkage determination for linear oligosaccharides based on multiple-stage tandem mass spectrometry (MS(n), n >2) and collision-induced dissociation (CID) of Z1 ions in the negative ion mode. Under low energy CID conditions, disaccharides (18)O-labeled on the reducing carbonyl group gave rise to Z1 product ions (m/z 163) derived from the reducing sugar, which could be mass-discriminated from other possible structural isomers having m/z 161. MS(3) CID of these m/z 163 ions showed distinct fragmentation fingerprints corresponding to the linkage types and largely unaffected by sugar unit identities or their anomeric configurations. This unique property allowed standard CID spectra of Z1 ions to be generated from a small set of disaccharide samples that were representative of many other possible isomeric structures. With the use of MS(n) CID (n = 3 - 5), model linear oligosaccharides were dissociated into overlapping disaccharide structures, which were subsequently fragmented to form their corresponding Z1 ions. CID data of these Z1 ions were collected and compared with the standard database of Z1 ion CID using spectra similarity scores for linkage determination. As the proof-of-principle tests demonstrated, we achieved correct determination of individual linkage types along with their locations within two trisaccharides and a pentasaccharide.

  4. Precise Determination of the Strangeness Magnetic Moment of the Nucleon

    SciTech Connect

    Leinweber, D B; Boinepalli, S; Cloet, I C; Thomas, A W; Williams, A G; Young, R D; Zanotti, J M; Zhang, J B

    2005-06-01

    By combining the constraints of charge symmetry with new chiral extrapolation techniques and recent low mass lattice QCD simulations of the individual quark contributions to the magnetic moments of the nucleon octet, we obtain a precise determination of the strange magnetic moment of the proton. The result, namely G{sub M}{sup s} = -0.051 +/- 0.021 mu{sub N}, is consistent with the latest experimental measurements but an order of magnitude more precise. This poses a tremendous challenge for future experiments.

  5. JASON-1: a New Reference for Precise Orbit Determination

    NASA Astrophysics Data System (ADS)

    Berthias, Jean-Paul; Broca, Patrick; Ferrier, Christophe; Gratton, Serge

    - The French-American satellite Jason-1 was launched in December 2001 to continue the mission of the TOPEX/Poseïdon satellite. Following the same ground track as its famous predecessor since January 14, 2002, Jason-1 continues the collection of high precision altimeter data over the oceans that contributes to our understanding of how oceans influence global climate processes. One of the key features of both the TOPEX/Poseïdon and the Jason missions is the precision of the orbit determination, better than 3 cm RMS on the radial component, which is without equal today. This is the result of many years of improvements in the knowledge of the Earth gravity field, as well as a very important efforts in the design of the satellites and in the modeling of the surface forces. It also benefits from the use of the most sophisticated tracking instrument available today . Equipped with the most advanced DORIS receiver, with a high quality Laser retroreflector array and with a top of the line dual frequency GPS receiver, Jason has become the new laboratory for precision orbit determination and for comparing the performances of tracking systems. The availability of the altimeter data offers a valuable additional source of validation of the orbits. Results show that these combined efforts are paying off. Orbits computed by many POD groups associated with the Jason project compare to the few centimeter level. Furthermore, orbits computed independantly with each of the available data types compare to within 2 cm RMS radially without any tuning of spacecraft models or excessive use of empirical accelerations. The combination of DORIS, SLR and GPS data now appears feasible and meaningful. In this paper, we will present the principles behind the Jason precise orbit determination, the current results and the efforts underway to improve the orbit precision.

  6. Precision Attitude Determination for an Infrared Space Telescope

    NASA Technical Reports Server (NTRS)

    Benford, Dominic J.

    2008-01-01

    We have developed performance simulations for a precision attitude determination system using a focal plane star tracker on an infrared space telescope. The telescope is being designed for the Destiny mission to measure cosmologically distant supernovae as one of the candidate implementations for the Joint Dark Energy Mission. Repeat observations of the supernovae require attitude control at the level of 0.010 arcseconds (0.05 microradians) during integrations and at repeat intervals up to and over a year. While absolute accuracy is not required, the repoint precision is challenging. We have simulated the performance of a focal plane star tracker in a multidimensional parameter space, including pixel size, read noise, and readout rate. Systematic errors such as proper motion, velocity aberration, and parallax can be measured and compensated out. Our prediction is that a relative attitude determination accuracy of 0.001 to 0.002 arcseconds (0.005 to 0.010 microradians) will be achievable.

  7. Precise determination of the helical repeat of tobacco mosaic virus

    SciTech Connect

    Kendall, Amy; McDonald, Michele; Stubbs, Gerald

    2007-12-05

    Tobacco mosaic virus (TMV) is widely used as a distance standard in electron microscopy, fiber diffraction, and other imaging techniques. The dimension used as a reference is the pitch of the viral helix, 23 A. This distance, however, has never been measured with any great degree of precision. The helical pitch of TMV has been determined to be 22.92 {+-} 0.03 A by X-ray fiber diffraction methods using highly collimated synchrotron radiation.

  8. Precise Determination of the Helical Repeat of Tobacco Mosaic Virus

    SciTech Connect

    Kendall, A.; McDonald, M.; Stubbs, G.

    2009-06-01

    Tobacco mosaic virus (TMV) is widely used as a distance standard in electron microscopy, fiber diffraction, and other imaging techniques. The dimension used as a reference is the pitch of the viral helix, 23 {angstrom}. This distance, however, has never been measured with any great degree of precision. The helical pitch of TMV has been determined to be 22.92 {+-}0.03 {angstrom} by X-ray fiber diffraction methods using highly collimated synchrotron radiation.

  9. Adaptation of the AOAC 2011.25 integrated total dietary fiber assay to determine the dietary fiber and oligosaccharide content of dry edible beans.

    PubMed

    Kleintop, Adrienne E; Echeverria, Dimas; Brick, Leslie A; Thompson, Henry J; Brick, Mark A

    2013-10-01

    Dietary fiber (DF) has important health benefits in the human diet. Developing dry edible bean (Phaseolus vulgaris L.) cultivars with improved DF and reduced nondigestible oligosaccharide content is an important goal for dry bean breeders to increase consumer acceptance. To determine if genetic variation exists among dry bean cultivars for DF, two populations of diverse dry bean cultivars/lines that represent two centers of dry bean domestication were evaluated for dietary fiber using the Integrated Total Dietary Fiber Assay (AOAC 2011.25). This assay was adapted to measure water insoluble dietary fiber, water soluble dietary fiber, oligosaccharides raffinose and stachyose, and the calculated total dietary fiber (TDF) content of cooked dry bean seed. The AOAC 2011.25 protocol was modified by using a quick, simple, and sensitive high-performance liquid chromatography method paired with an electrochemical detection method to separate and quantify specific oligosaccharides, and using duplicate samples as replicates to generate statistical information. The TDF of dry bean entries ranged from 20.0 to 27.0% in population I and from 20.6 to 25.7% in population II. Total oligosaccharides ranged from 2.56 to 4.65% in population I and from 2.36 to 3.84% in population II. The results suggest that significant genetic variation exists among dry bean cultivars/lines to allow for genetic selection for improved DF content in dry beans and that the modifications to the AOAC 2011.25 method were suitable for estimating DF in cooked dry edible beans. PMID:24006936

  10. Adaptation of the AOAC 2011.25 integrated total dietary fiber assay to determine the dietary fiber and oligosaccharide content of dry edible beans.

    PubMed

    Kleintop, Adrienne E; Echeverria, Dimas; Brick, Leslie A; Thompson, Henry J; Brick, Mark A

    2013-10-01

    Dietary fiber (DF) has important health benefits in the human diet. Developing dry edible bean (Phaseolus vulgaris L.) cultivars with improved DF and reduced nondigestible oligosaccharide content is an important goal for dry bean breeders to increase consumer acceptance. To determine if genetic variation exists among dry bean cultivars for DF, two populations of diverse dry bean cultivars/lines that represent two centers of dry bean domestication were evaluated for dietary fiber using the Integrated Total Dietary Fiber Assay (AOAC 2011.25). This assay was adapted to measure water insoluble dietary fiber, water soluble dietary fiber, oligosaccharides raffinose and stachyose, and the calculated total dietary fiber (TDF) content of cooked dry bean seed. The AOAC 2011.25 protocol was modified by using a quick, simple, and sensitive high-performance liquid chromatography method paired with an electrochemical detection method to separate and quantify specific oligosaccharides, and using duplicate samples as replicates to generate statistical information. The TDF of dry bean entries ranged from 20.0 to 27.0% in population I and from 20.6 to 25.7% in population II. Total oligosaccharides ranged from 2.56 to 4.65% in population I and from 2.36 to 3.84% in population II. The results suggest that significant genetic variation exists among dry bean cultivars/lines to allow for genetic selection for improved DF content in dry beans and that the modifications to the AOAC 2011.25 method were suitable for estimating DF in cooked dry edible beans.

  11. Precision orbit determination using TOPEX/Poseidon TDRSS observations

    NASA Technical Reports Server (NTRS)

    Teles, Jerome; Putney, B.; Phelps, J.; Mccarthy, J.; Eddy, W.; Klosko, S.

    1993-01-01

    The TOPEX/Poseidon (T/P) Mission carries a variety of packages to support experimental, precision and operational orbit determination. Included are a GPS transponder, laser retro-reflectors, the French-developed Doppler Orbitography and Radiopositioning Integrated by Satellite (DORIS) Doppler tracking system and a Tracking Data Relay Satellite System (TDRSS) transponder. Presently, TDRSS tracking is used for operational orbit support and is processed with force and measurement modeling consistent with this purpose. However, the low noise and extensive geographical coverage of the TDRSS/TOPEX data allows an assessment of TDRSS Precision Orbit Determination (POD) capabilities by comparison to the T/P precision orbit determination. The Geodynamics (GEODYN) Orbit Determination System is used to process laser and DORIS data to produce the precision orbits for the T/P Project. GEODYN has been modified recently to support the TDRSS observations. TDRSS data analysis can now benefit from the extensive force modeling and reference frame stability needed to meet the orbit determination (OD) goals of the T/P Mission. This analysis has concentrated on the strongest of the TDRSS measurement types, its two-way average range rate. Both the TDRSS and T/P orbits have been assessed in combination with the global satellite laser ranging (SLR) data and by themselves. These results indicate that significant improvement in the TDRSS ephemerides is obtained when the T/P orbit is well determined by SLR, and the TDRSS/TOPEX Doppler link is used to position TDRSS. Meter-level TDRSS positioning uncertainty is achieved using this approach. When the TDRSS orbit location is provided by this approach, the two-way range rate from a single TDRSS (i.e. West only) can provide T/P orbits with sub-meter radial accuracies and two meter RMS total position agreement with SLR defined orbits. These preliminary results indicate improved modeling of the TDRSS measurement through the elimination of heretofore

  12. Structural confirmation of novel oligosaccharides isolated from sugar beet molasses.

    PubMed

    Abe, Tatsuya; Kikuchi, Hiroto; Aritsuka, Tsutomu; Takata, Yusuke; Fukushi, Eri; Fukushi, Yukiharu; Kawabata, Jun; Ueno, Keiji; Onodera, Shuichi; Shiomi, Norio

    2016-07-01

    Eleven oligosaccharides were isolated from sugar beet molasses using carbon-Celite column chromatography and HPLC. The constituent sugars and linkage positions were determined using methylation analysis, MALDI-TOF-MS, and NMR measurements. The configurations of isolated oligosaccharides were confirmed based on detailed NMR analysis. Based on our results, three of the 11 oligosaccharides were novel. PMID:26920296

  13. Strategies for high-precision Global Positioning System orbit determination

    NASA Technical Reports Server (NTRS)

    Lichten, Stephen M.; Border, James S.

    1987-01-01

    Various strategies for the high-precision orbit determination of the GPS satellites are explored using data from the 1985 GPS field test. Several refinements to the orbit determination strategies were found to be crucial for achieving high levels of repeatability and accuracy. These include the fine tuning of the GPS solar radiation coefficients and the ground station zenith tropospheric delays. Multiday arcs of 3-6 days provided better orbits and baselines than the 8-hr arcs from single-day passes. Highest-quality orbits and baselines were obtained with combined carrier phase and pseudorange solutions.

  14. Precise orbit determination of SPOT platform with DORIS

    NASA Astrophysics Data System (ADS)

    Nouel, F.; Berthias, J. P.; Broca, P.; Deleuze, M.; Guitart, A.; Laudet, P.; Pierret, C.; Piuzzi, A.; Valorge, C.

    1992-08-01

    DORIS (Doppler Orbitography and Radiopositioning Integrated by Satellite) is a new precise orbit determination system developed by CNES to meet the high accuracy requirement of oceanographic altimetric missions of TOPEX/Poseidon. The system is based upon a worldwide network of about 50 ground transmitting beacons, a Doppler receiver onboard of the satellite, a ground segment to control the system and a new software called ZOOM to compute the orbit. To prepare the DORIS operational applications and to access the in flight performances, a first DORIS receiver was put on SPOT2 platform, the network of orbitography beacons was deployed, and the ZOOM software was tested with actual data. Since the SPOT2 launch of January 22, 1990, improvements have been made in orbit computation. The paper emphasizes the major points which contribute to high precision objectives, during the first year of DORIS/SPOT2 life.

  15. Reaction pathway and free energy profile determined for specific recognition of oligosaccharide moiety of carboxypeptidase Y.

    PubMed

    Senkara-Barwijuk, Elżbieta; Kobiela, Tomasz; Lebed, Kateryna; Lekka, Małgorzata

    2012-01-01

    The interaction of mannose specific lectin (from Lens culinaris, LcL) with the carbohydrate moiety of carboxypeptidase Y (CaY) was studied using both atomic force microscope (AFM) and quartz crystal microbalance with dissipation monitoring (QCM-D). The AFM enables to determine the positions of energy barriers present in the energy landscape of the single complex undergoing dissociation. The QCM-D measurements allow the estimation of the quantitative parameters characterizing the kinetics of the studied molecular interaction (namely the association and dissociation rate constants and the association constant). The use of both methods not only delivers the complementary characterization of kinetic and thermodynamic parameters but also permits to investigate the mechanism of the binding and unbinding of the molecules. The results for LcL were compared with those obtained for concanavalin A i.e. lectin, which interacts with the carbohydrate moiety on a similar way.

  16. Hexuronic acid stereochemistry determination in chondroitin sulfate glycosaminoglycan oligosaccharides by electron detachment dissociation.

    PubMed

    Leach, Franklin E; Ly, Mellisa; Laremore, Tatiana N; Wolff, Jeremy J; Perlow, Jacob; Linhardt, Robert J; Amster, I Jonathan

    2012-09-01

    Electron detachment dissociation (EDD) has previously provided stereo-specific product ions that allow for the assignment of the acidic C-5stereochemistry in heparan sulfate glycosaminoglycans (GAGs), but application of the same methodology to an epimer pair in the chondroitin sulfate glycoform class does not provide the same result. A series of experiments have been conducted in which glycosaminoglycan precursor ions are independently activated by electron detachment dissociation (EDD), electron induced dissociation (EID), and negative electron transfer dissociation (NETD) to assign the stereochemistry in chondroitin sulfate (CS) epimers and investigate the mechanisms for product ion formation during EDD in CS glycoforms. This approach allows for the assignment of electronic excitation products formed by EID and detachment products to radical pathways in NETD, both of which occur simultaneously during EDD. The uronic acid stereochemistry in electron detachment spectra produces intensity differences when assigned glycosidic and cross-ring cleavages are compared. The variations in the intensities of the doubly deprotonated (0,2)X(3) and Y(3) ions have been shown to be indicative of CS-A/DS composition during the CID of binary mixtures. These ions can provide insight into the uronic acid composition of binary mixtures in EDD, but the relative abundances, although reproducible, are low compared with those in a CID spectrum acquired on an ion trap. The application of principal component analysis (PCA) presents a multivariate approach to determining the uronic acid stereochemistry spectra of these GAGs by taking advantage of the reproducible peak distributions produced by electron detachment.

  17. Hexuronic Acid Stereochemistry Determination in Chondroitin Sulfate Glycosaminoglycan Oligosaccharides by Electron Detachment Dissociation

    NASA Astrophysics Data System (ADS)

    Leach, Franklin E.; Ly, Mellisa; Laremore, Tatiana N.; Wolff, Jeremy J.; Perlow, Jacob; Linhardt, Robert J.; Amster, I. Jonathan

    2012-09-01

    Electron detachment dissociation (EDD) has previously provided stereo-specific product ions that allow for the assignment of the acidic C-5stereochemistry in heparan sulfate glycosaminoglycans (GAGs), but application of the same methodology to an epimer pair in the chondroitin sulfate glycoform class does not provide the same result. A series of experiments have been conducted in which glycosaminoglycan precursor ions are independently activated by electron detachment dissociation (EDD), electron induced dissociation (EID), and negative electron transfer dissociation (NETD) to assign the stereochemistry in chondroitin sulfate (CS) epimers and investigate the mechanisms for product ion formation during EDD in CS glycoforms. This approach allows for the assignment of electronic excitation products formed by EID and detachment products to radical pathways in NETD, both of which occur simultaneously during EDD. The uronic acid stereochemistry in electron detachment spectra produces intensity differences when assigned glycosidic and cross-ring cleavages are compared. The variations in the intensities of the doubly deprotonated 0,2X3 and Y3 ions have been shown to be indicative of CS-A/DS composition during the CID of binary mixtures. These ions can provide insight into the uronic acid composition of binary mixtures in EDD, but the relative abundances, although reproducible, are low compared with those in a CID spectrum acquired on an ion trap. The application of principal component analysis (PCA) presents a multivariate approach to determining the uronic acid stereochemistry spectra of these GAGs by taking advantage of the reproducible peak distributions produced by electron detachment.

  18. Precise Orbit Determination of BeiDou Navigation Satellite System

    NASA Astrophysics Data System (ADS)

    He, Lina; Ge, Maorong; Wang, Jiexian; Wickert, Jens; Schuh, Harald

    2013-04-01

    China has been developing its own independent satellite navigation system since decades. Now the COMPASS system, also known as BeiDou, is emerging and gaining more and more interest and attention in the worldwide GNSS communities. The current regional BeiDou system is ready for its operational service around the end of 2012 with a constellation including five Geostationary Earth Orbit satellites (GEO), five Inclined Geosynchronous Orbit satellites (IGSO) and four Medium Earth orbit (MEO) satellites in operation. Besides the open service with positioning accuracy of around 10m which is free to civilian users, both precise relative positioning, and precise point positioning are demonstrated as well. In order to enhance the BeiDou precise positioning service, Precise Orbit Determination (POD) which is essential of any satellite navigation system has been investigated and studied thoroughly. To further improving the orbits of different types of satellites, we study the impact of network coverage on POD data products by comparing results from tracking networks over the Chinese territory, Asian-Pacific, Asian and of global scale. Furthermore, we concentrate on the improvement of involving MEOs on the orbit quality of GEOs and IGSOs. POD with and without MEOs are undertaken and results are analyzed. Finally, integer ambiguity resolution which brings highly improvement on orbits and positions with GPS data is also carried out and its effect on POD data products is assessed and discussed in detail. Seven weeks of BeiDou data from a ground tracking network, deployed by Wuhan University is employed in this study. The test constellation includes four GEO, five IGSO and two MEO satellites in operation. The three-day solution approach is employed to enhance its strength due to the limited coverage of the tracking network and the small movement of most of the satellites. A number of tracking scenarios and processing schemas are identified and processed and overlapping orbit

  19. Precise attitude determination of defunct satellite laser ranging tragets

    NASA Astrophysics Data System (ADS)

    Pittet, Jean-Noel; Schildknecht, Thomas; Silha, Jiri

    2016-07-01

    The Satellite Laser Ranging (SLR) technology is used to determine the dynamics of objects equipped with so-called retro-reflectors or retro-reflector arrays (RRA). This type of measurement allows to range to the spacecraft with very high precision, which leads to determination of very accurate orbits. Non-active spacecraft, which are not any more attitude controlled, tend to start to spin or tumble under influence of the external and internal torques. Such a spinning can be around one constant axis of rotation or it can be more complex, when also precession and nutation motions are present. The rotation of the RRA around the spacecraft's centre of mass can create both a oscillation pattern of laser range signal and a periodic signal interruption when the RRA is hidden behind the satellite. In our work we will demonstrate how the SLR ranging technique to cooperative targets can be used to determine precisely their attitude state. The processing of the obtained data will be discussed, as well as the attitude determination based on parameters estimation. Continuous SLR measurements to one target can allow to accurately monitor attitude change over time which can be further used for the future attitude modelling. We will show our solutions of the attitude states determined for the non-active ESA satellite ENVISAT based on measurements acquired during year 2013-2015 by Zimmerwald SLR station, Switzerland. The angular momentum shows a stable behaviour with respect to the orbital plane but is not aligned with orbital momentum. The determination of the inertial rotation over time, shows it evolving between 130 to 190 seconds within two year. Parameter estimation also bring a strong indication of a retrograde rotation. Results on other former satellites in low and medium Earth orbit such as TOPEX/Poseidon or GLONASS type will be also presented.

  20. Precision Orbit Determination for the Lunar Reconnaissance Orbiter

    NASA Astrophysics Data System (ADS)

    Lemoine, F. G.; Mazarico, E.; Rowlands, D. D.; Torrence, M. H.; McGarry, J. F.; Neumann, G. A.; Mao, D.; Smith, D. E.; Zuber, M. T.

    2010-05-01

    The Lunar Reconnaissance Orbiter (LRO) spacecraft was launched on June 18, 2009. In mid-September 2009, the spacecraft orbit was changed from its commissioning orbit (30 x 216 km polar) to a quasi-frozen polar orbit with an average altitude of 50km (+-15km). One of the goals of the LRO mission is to develop a new lunar reference frame to facilitate future exploration. Precision Orbit Determination is used to achieve the accuracy requirements, and to precisely geolocate the high-resolution datasets obtained by the LRO instruments. In addition to the tracking data most commonly used to determine spacecraft orbits in planetary missions (radiometric Range and Doppler), LRO benefits from two other types of orbital constraints, both enabled by the Lunar Orbiter Laser Altimeter (LOLA) instrument. The altimetric data collected as the instrument's primary purpose can be used to derive constraints on the orbit geometry at the times of laser groundtrack intersections (crossovers). The multi-beam configuration and high firing-rate of LOLA further improves the strength of these crossovers, compared to what was possible with the MOLA instrument onboard Mars Global Surveyor (MGS). Furthermore, one-way laser ranges (LR) between Earth International Laser Ranging Service (ILRS) stations and the spacecraft are made possible by the addition of a small telescope mounted on the spacecraft high-gain antenna. The photons received from Earth are transmitted to one LOLA detector by a fiber optics bundle. Thanks to the accuracy of the LOLA timing system, the precision of 5-s LR normal points is below 10cm. We present the first results of the Precision Orbit Determination (POD) of LRO through the commissioning and nominal phases of the mission. Orbit quality is discussed, and various gravity fields are evaluated with the new (independent) LRO radio tracking data. The altimetric crossovers are used as an independent data type to evaluate the quality of the orbits. The contribution of the LR

  1. Oligosaccharides of Cabernet Sauvignon, Syrah and Monastrell red wines.

    PubMed

    Apolinar-Valiente, Rafael; Romero-Cascales, Inmaculada; Williams, Pascale; Gómez-Plaza, Encarna; López-Roca, José María; Ros-García, José María; Doco, Thierry

    2015-07-15

    Wine oligosaccharides were recently characterized and their concentrations, their composition and their roles on different wines remain to be determined. The concentration and composition of oligosaccharides in Cabernet Sauvignon, Syrah and Monastrell wines was studied. Oligosaccharide fractions were isolated by high resolution size-exclusion chromatography. The neutral and acidic sugar composition was determined by gas chromatography. The MS spectra of the oligosaccharides were performed on an AccuTOF mass spectrometer. Molar-mass distributions were determined by coupling size exclusion chromatography with a multi-angle light scattering device (MALLS) and a differential refractive index detector. Results showed significant differences in the oligosaccharidic fraction from Cabernet Sauvignon, Syrah and Monastrell wines. This study shows the influence that the grape variety seems have on the quantity, composition and structure of oligosaccharides in the finished wine. To our knowledge, this is the first report to research the oligosaccharides composition of Cabernet Sauvignon, Syrah and Monastrell wines.

  2. Oligosaccharides of Cabernet Sauvignon, Syrah and Monastrell red wines.

    PubMed

    Apolinar-Valiente, Rafael; Romero-Cascales, Inmaculada; Williams, Pascale; Gómez-Plaza, Encarna; López-Roca, José María; Ros-García, José María; Doco, Thierry

    2015-07-15

    Wine oligosaccharides were recently characterized and their concentrations, their composition and their roles on different wines remain to be determined. The concentration and composition of oligosaccharides in Cabernet Sauvignon, Syrah and Monastrell wines was studied. Oligosaccharide fractions were isolated by high resolution size-exclusion chromatography. The neutral and acidic sugar composition was determined by gas chromatography. The MS spectra of the oligosaccharides were performed on an AccuTOF mass spectrometer. Molar-mass distributions were determined by coupling size exclusion chromatography with a multi-angle light scattering device (MALLS) and a differential refractive index detector. Results showed significant differences in the oligosaccharidic fraction from Cabernet Sauvignon, Syrah and Monastrell wines. This study shows the influence that the grape variety seems have on the quantity, composition and structure of oligosaccharides in the finished wine. To our knowledge, this is the first report to research the oligosaccharides composition of Cabernet Sauvignon, Syrah and Monastrell wines. PMID:25722170

  3. Precise determination of lattice phase shifts and mixing angles

    NASA Astrophysics Data System (ADS)

    Lu, Bing-Nan; Lähde, Timo A.; Lee, Dean; Meißner, Ulf-G.

    2016-09-01

    We introduce a general and accurate method for determining lattice phase shifts and mixing angles, which is applicable to arbitrary, non-cubic lattices. Our method combines angular momentum projection, spherical wall boundaries and an adjustable auxiliary potential. This allows us to construct radial lattice wave functions and to determine phase shifts at arbitrary energies. For coupled partial waves, we use a complex-valued auxiliary potential that breaks time-reversal invariance. We benchmark our method using a system of two spin-1/2 particles interacting through a finite-range potential with a strong tensor component. We are able to extract phase shifts and mixing angles for all angular momenta and energies, with precision greater than that of extant methods. We discuss a wide range of applications from nuclear lattice simulations to optical lattice experiments.

  4. Structure determination by MALDI-IRMPD mass spectrometry and exoglycosidase digestions of O-linked oligosaccharides from Xenopus borealis egg jelly

    PubMed Central

    Li, Bensheng; Russell, Scott C; Zhang, Jinhua; Hedrick, Jerry L; Lebrilla, Carlito B

    2011-01-01

    Differences in the fertilization behavior of Xenopus borealis from X. laevis and X. tropicalis suggest differences in the glycosylation of the egg jellies. To test this assumption, O-linked glycans were chemically released from the egg jelly coat glycoproteins of X. borealis. Over 50 major neutral glycans were observed, and no anionic glycans were detected from the released O-glycan pool. Preliminary structures of ∼30 neutral oligosaccharides were determined using matrix-assisted laser desorption/ionization (MALDI) infrared multiphoton dissociation tandem mass spectrometry (MS). The mass fingerprint of a group of peaks for the core-2 structure of O-glycans was conserved in the tandem mass spectra and was instrumental in rapid and efficient structure determination. Among the 29 O-glycans, 22 glycans contain the typical core-2 structure, 3 glycans have the core-1 structure and 2 glycans contained a previously unobserved core structure with hexose at the reducing end. There were seven pairs of structural isomers observed in the major O-linked oligosaccharides. To further elucidate the structures of a dozen O-linked glycans, specific and targeted exoglycosidase digestions were carried out and the products were monitored with MALDI-MS. Reported here are the elucidated structures of O-linked oligosaccharides from glycoproteins of X. borealis egg jelly coats. The structural differences in O-glycans from jelly coats of X. borealis and its close relatives may provide a better understanding of the structure–function relationships and the role of glycans in the fertilization process within Xenopodinae. PMID:21220250

  5. Improving GLONASS Precise Orbit Determination through Data Connection.

    PubMed

    Liu, Yang; Ge, Maorong; Shi, Chuang; Lou, Yidong; Wickert, Jens; Schuh, Harald

    2015-12-02

    In order to improve the precision of GLONASS orbits, this paper presents a method to connect the data segments of a single station-satellite pair to increase the observation continuity and, consequently, the strength of the precise orbit determination (POD) solution. In this method, for each GLONASS station-satellite pair, the wide-lane ambiguities derived from the Melbourne-Wübbena combination are statistically tested and corrected for phase integer offsets and then the same is carried out for the narrow-lane ambiguities calculated from the POD solution. An experimental validation was carried out using one-month GNSS data of a global network with 175 IGS stations. The result shows that, on average, 27.1% of the GLONASS station-satellite pairs with multiple data segments could be connected to a single long observation arc and, thus, only one ambiguity parameter was estimated. Using the connected data, the GLONASS orbit overlapping RMS at the day boundaries could be reduced by 19.2% in ideal cases with an averaged reduction of about 6.3%.

  6. Improving GLONASS Precise Orbit Determination through Data Connection

    PubMed Central

    Liu, Yang; Ge, Maorong; Shi, Chuang; Lou, Yidong; Wickert, Jens; Schuh, Harald

    2015-01-01

    In order to improve the precision of GLONASS orbits, this paper presents a method to connect the data segments of a single station-satellite pair to increase the observation continuity and, consequently, the strength of the precise orbit determination (POD) solution. In this method, for each GLONASS station-satellite pair, the wide-lane ambiguities derived from the Melbourne–Wübbena combination are statistically tested and corrected for phase integer offsets and then the same is carried out for the narrow-lane ambiguities calculated from the POD solution. An experimental validation was carried out using one-month GNSS data of a global network with 175 IGS stations. The result shows that, on average, 27.1% of the GLONASS station-satellite pairs with multiple data segments could be connected to a single long observation arc and, thus, only one ambiguity parameter was estimated. Using the connected data, the GLONASS orbit overlapping RMS at the day boundaries could be reduced by 19.2% in ideal cases with an averaged reduction of about 6.3%. PMID:26633414

  7. Precision orbit determination for the Geosat Exact Repeat Mission

    NASA Technical Reports Server (NTRS)

    Shum, C. K.; Yuan, D. N.; Ries, J. C.; Smith, J. C.; Schutz, B. E.

    1990-01-01

    Precise ephemerides have been determined for the U.S. Navy Geosat Exact Repeat Mission (ERM) using an improved gravity-field model, PTGF-4A (Shum et al. 1989). The Geosat orbits were computed in a terrestrial reference system which is tied to the reference system defined by satellite laser ranging (SLR) to Lageos through a survey between the Tranet Doppler receiver and the SLR system located at Wettzell, FRG. The remaining Doppler tracking station coordinates were estimated simultaneously with the geopotential in the PTGF-4A solution. In this analysis, three continuous 17-day Geosat orbits, which were computed using the 46-station Tranet data and global altimeter crossover data, have a crossover residual rms of 20 cm, indicating that the Geosat radial orbit error is of the order of 20 cm. The orbits computed based on data collected by a 7-station OPNET tracking network and crossover data have the same level of accuracy.

  8. Precise baseline determination for the TanDEM-X mission

    NASA Astrophysics Data System (ADS)

    Koenig, Rolf; Moon, Yongjin; Neumayer, Hans; Wermuth, Martin; Montenbruck, Oliver; Jäggi, Adrian

    The TanDEM-X mission will strive for generating a global precise Digital Elevation Model (DEM) by way of bi-static SAR in a close formation of the TerraSAR-X satellite, already launched on June 15, 2007, and the TanDEM-X satellite to be launched in May 2010. Both satellites carry the Tracking, Occultation and Ranging (TOR) payload supplied by the GFZ German Research Centre for Geosciences. The TOR consists of a high-precision dual-frequency GPS receiver, called Integrated GPS Occultation Receiver (IGOR), and a Laser retro-reflector (LRR) for precise orbit determination (POD) and atmospheric sounding. The IGOR is of vital importance for the TanDEM-X mission objectives as the millimeter level determination of the baseline or distance between the two spacecrafts is needed to derive meter level accurate DEMs. Within the TanDEM-X ground segment GFZ is responsible for the operational provision of precise baselines. For this GFZ uses two software chains, first its Earth Parameter and Orbit System (EPOS) software and second the BERNESE software, for backup purposes and quality control. In a concerted effort also the German Aerospace Center (DLR) generates precise baselines independently with a dedicated Kalman filter approach realized in its FRNS software. By the example of GRACE the generation of baselines with millimeter accuracy from on-board GPS data can be validated directly by way of comparing them to the intersatellite K-band range measurements. The K-band ranges are accurate down to the micrometer-level and therefore may be considered as truth. Both TanDEM-X baseline providers are able to generate GRACE baselines with sub-millimeter accuracy. By merging the independent baselines by GFZ and DLR, the accuracy can even be increased. The K-band validation however covers solely the along-track component as the K-band data measure just the distance between the two GRACE satellites. In addition they inhibit an un-known bias which must be modelled in the comparison, so the

  9. TOPEX/Poseidon precision orbit determination production and expert system

    NASA Technical Reports Server (NTRS)

    Putney, Barbara; Zelensky, Nikita; Klosko, Steven

    1993-01-01

    TOPEX/Poseidon (T/P) is a joint mission between NASA and the Centre National d'Etudes Spatiales (CNES), the French Space Agency. The TOPEX/Poseidon Precision Orbit Determination Production System (PODPS) was developed at Goddard Space Flight Center (NASA/GSFC) to produce the absolute orbital reference required to support the fundamental ocean science goals of this satellite altimeter mission within NASA. The orbital trajectory for T/P is required to have a RMS accuracy of 13 centimeters in its radial component. This requirement is based on the effective use of the satellite altimetry for the isolation of absolute long-wavelength ocean topography important for monitoring global changes in the ocean circulation system. This orbit modeling requirement is at an unprecedented accuracy level for this type of satellite. In order to routinely produce and evaluate these orbits, GSFC has developed a production and supporting expert system. The PODPS is a menu driven system allowing routine importation and processing of tracking data for orbit determination, and an evaluation of the quality of the orbit so produced through a progressive series of tests. Phase 1 of the expert system grades the orbit and displays test results. Later phases undergoing implementation, will prescribe corrective actions when unsatisfactory results are seen. This paper describes the design and implementation of this orbit determination production system and the basis for its orbit accuracy assessment within the expert system.

  10. Can an ancestral condition for milk oligosaccharides be determined? Evidence from the Tasmanian echidna (Tachyglossus aculeatus setosus).

    PubMed

    Oftedal, Olav T; Nicol, Stewart C; Davies, Noel W; Sekii, Nobuhiro; Taufik, Epi; Fukuda, Kenji; Saito, Tadao; Urashima, Tadasu

    2014-09-01

    The monotreme pattern of egg-incubation followed by extended lactation represents the ancestral mammalian reproductive condition, suggesting that monotreme milk may include saccharides of an ancestral type. Saccharides were characterized from milk of the Tasmanian echidna Tachyglossus aculeatus setosus. Oligosaccharides in pooled milk from late lactation were purified by gel filtration and high-performance liquid chromatography using a porous graphitized carbon column and characterized by (1)H NMR spectroscopy; oligosaccharides in smaller samples from early and mid-lactation were separated by ultra-performance liquid chromatography and characterized by negative electrospray ionization mass spectrometry (ESI-MS) and tandem collision mass spectroscopy (MS/MS) product ion patterns. Eight saccharides were identified by (1)H NMR: lactose, 2'-fucosyllactose, difucosyllactose (DFL), B-tetrasaccharide, B-pentasaccharide, lacto-N-fucopentaose III (LNFP3), 4-O-acetyl-3'-sialyllactose [Neu4,5Ac(α2-3)Gal(β1-4)Glc] and 4-O-acetyl-3'-sialyl-3-fucosyllactose [Neu4,5Ac(α2-3)Gal(β1-4)[Fuc(α1-3)]Glc]. Six of these (all except DFL and LNFP3) were present in early and mid-lactation per ESI-MS, although some at trace levels. Four additional oligosaccharides examined by ESI-MS and MS/MS are proposed to be 3'-sialyllactose [Neu5Ac(α2-3)Gal(β1-4)Glc], di-O-acetyl-3'-sialyllactose [Neu4,5,UAc3(α2-3)Gal(β1-4)Glc where U = 7, 8 or 9], 4-O-acetyl-3'-sialyllactose sulfate [Neu4,5Ac(α2-3)Gal(β1-4)GlcS, where position of the sulfate (S) is unknown] and an unidentified 800 Da oligosaccharide containing a 4-O-acetyl-3'-sialyllactose core. 4-O-acetyl-3'-sialyllactose was the predominant saccharide at all lactation stages. 4-O-Acetylation is known to protect sialyllactose from bacterial sialidases and may be critical to prevent microbial degradation on the mammary areolae and/or in the hatchling digestive tract so that sialyllactose can be available for enterocyte uptake. The ability to

  11. Can an ancestral condition for milk oligosaccharides be determined? Evidence from the Tasmanian echidna (Tachyglossus aculeatus setosus).

    PubMed

    Oftedal, Olav T; Nicol, Stewart C; Davies, Noel W; Sekii, Nobuhiro; Taufik, Epi; Fukuda, Kenji; Saito, Tadao; Urashima, Tadasu

    2014-09-01

    The monotreme pattern of egg-incubation followed by extended lactation represents the ancestral mammalian reproductive condition, suggesting that monotreme milk may include saccharides of an ancestral type. Saccharides were characterized from milk of the Tasmanian echidna Tachyglossus aculeatus setosus. Oligosaccharides in pooled milk from late lactation were purified by gel filtration and high-performance liquid chromatography using a porous graphitized carbon column and characterized by (1)H NMR spectroscopy; oligosaccharides in smaller samples from early and mid-lactation were separated by ultra-performance liquid chromatography and characterized by negative electrospray ionization mass spectrometry (ESI-MS) and tandem collision mass spectroscopy (MS/MS) product ion patterns. Eight saccharides were identified by (1)H NMR: lactose, 2'-fucosyllactose, difucosyllactose (DFL), B-tetrasaccharide, B-pentasaccharide, lacto-N-fucopentaose III (LNFP3), 4-O-acetyl-3'-sialyllactose [Neu4,5Ac(α2-3)Gal(β1-4)Glc] and 4-O-acetyl-3'-sialyl-3-fucosyllactose [Neu4,5Ac(α2-3)Gal(β1-4)[Fuc(α1-3)]Glc]. Six of these (all except DFL and LNFP3) were present in early and mid-lactation per ESI-MS, although some at trace levels. Four additional oligosaccharides examined by ESI-MS and MS/MS are proposed to be 3'-sialyllactose [Neu5Ac(α2-3)Gal(β1-4)Glc], di-O-acetyl-3'-sialyllactose [Neu4,5,UAc3(α2-3)Gal(β1-4)Glc where U = 7, 8 or 9], 4-O-acetyl-3'-sialyllactose sulfate [Neu4,5Ac(α2-3)Gal(β1-4)GlcS, where position of the sulfate (S) is unknown] and an unidentified 800 Da oligosaccharide containing a 4-O-acetyl-3'-sialyllactose core. 4-O-acetyl-3'-sialyllactose was the predominant saccharide at all lactation stages. 4-O-Acetylation is known to protect sialyllactose from bacterial sialidases and may be critical to prevent microbial degradation on the mammary areolae and/or in the hatchling digestive tract so that sialyllactose can be available for enterocyte uptake. The ability to

  12. Improving integer ambiguity resolution for GLONASS precise orbit determination

    NASA Astrophysics Data System (ADS)

    Liu, Yang; Ge, Maorong; Shi, Chuang; Lou, Yidong; Wickert, Jens; Schuh, Harald

    2016-08-01

    The frequency division multiple access adopted in present GLONASS introduces inter-frequency bias (IFB) at the receiver-end both in code and phase observables, which makes GLONASS ambiguity resolution rather difficult or even not available, especially for long baselines up to several thousand kilometers. This is one of the major reasons that GLONASS could hardly reach the orbit precision of GPS, both in terms of consistency among individual International GNSS Service (IGS) analysis centers and discontinuity at the overlapping day boundaries. Based on the fact that the GLONASS phase IFB is similar on L1 and L2 bands in unit of length and is a linear function of the frequency number, several approaches have been developed to estimate and calibrate the IFB for integer ambiguity resolution. However, they are only for short and medium baselines. In this study, a new ambiguity resolution approach is developed for GLONASS global networks. In the approach, the phase ambiguities in the ionosphere-free linear combination are directly transformed with a wavelength of about 5.3 cm, according to the special frequency relationship of GLONASS L1 and L2 signals. After such transformation, the phase IFB rate can be estimated and corrected precisely and then the corresponding double-differenced ambiguities can be directly fixed to integers even for baselines up to several thousand kilometers. To evaluate this approach, experimental validations using one-month data of a global network with 140 IGS stations was carried out for GLONASS precise orbit determination. The results show that the GLONASS double-difference ambiguity resolution for long baselines could be achieved with an average fixing-rate of 91.4 %. Applying the fixed ambiguities as constraints, the GLONASS orbit overlapping RMS at the day boundaries could be reduced by 37.2 % in ideal cases and with an averaged reduction of about 21.4 %, which is comparable with that by the GPS ambiguity resolution. The orbit improvement is

  13. Simple column-switching ion chromatography method for determining eight monosaccharides and oligosaccharides in honeydew and nectar.

    PubMed

    Ni, Chengzhu; Zhu, Binhe; Wang, Nani; Wang, Muhua; Chen, Suqing; Zhang, Jiajie; Zhu, Yan

    2016-03-01

    Honeydew is excreted by aphids as a sweet waste and nectar is floral honey. Honeydew and nectar are complicated samples which consist of various sugars and amino acids. In this work, a simple ion chromatography with column-switching method was developed for the simultaneous analysis of 8 monosaccharides and oligosaccharides in honeydew and nectar. A reversed-phase column was used as a pretreatment column to eliminate organics on-line and sugars were eluted from a collection loop to analytical column by using column-switching technique. This method showed good linearity (r⩾0.9994) and afforded low limits of detection ranging from 1.55 to 10.17μgL(-1) for all the analytes. Recoveries ranged from 95% to 105% and repeatability results were acceptable with relative standard deviation of less than 3.21% (n=6). This method was successfully applied to quantification of these sugars in honeydew and nectar. These results showed honeydew had much more oligosaccharides than nectar.

  14. Precise determination of ferrous iron in silicate rocks

    NASA Astrophysics Data System (ADS)

    Yokoyama, Tetsuya; Nakamura, Eizo

    2002-03-01

    We have developed a highly precise method for the determination of ferrous iron (Fe 2+) in silicate rocks. Our new method is based on Wilson's procedure (1955) in which surplus V 5+ is used to oxidize Fe 2+ into Fe 3+ while equivalently reducing V 5+ into V 4+. Because V 4+ is more resistant to atmospheric oxidation than Fe 2+, Fe 2+ in the sample can be determined by measuring unreacted V 5+ by adding excess Fe 2+ after sample decomposition and then titrating the unreacted Fe 2+ with Cr 6+. With our method, which involves conditioning the sample solution with 5 M H 2SO 4 in a relatively small beaker (7 mL), the oxidation of Fe 2+ or V 4+ that leads to erroneous results can be completely avoided, even in 100-h sample decompositions at 100°C. We have measured the concentration of FeO in 15 standard silicate rock powders provided by the Geological Survey of Japan (GSJ). Analytical reproducibility was better than 0.5% (1σ) for all but those samples that had small amounts of Fe 2+ (<1.5 wt.% of FeO). Fourteen of these samples gave FeO contents significantly higher than the GSJ reference values. This likely indicates that the GSJ reference values, obtained by compiling previously published data, contain a large number of poor-quality data obtained by methods with lower recovery of Fe 2+ caused by oxidation or insufficient sample decomposition during analyses. To achieve accurate determinations of Fe 2+ in our method, several factors besides the oxidation must be considered, including: (1) long-term variations in the concentration of Fe 2+ solution must be corrected; (2) excess use of the indicator must be avoided; and (3) the formation of inert FeF + complex must be avoided during titration when using boric acid as a masking agent.

  15. Precise satellite orbit determination with particular application to ERS-1

    NASA Astrophysics Data System (ADS)

    Fernandes, Maria Joana Afonso Pereira

    The motivation behind this study is twofold. First to assess the accuracy of ERS-1 long arc ephemerides using state of the art models. Second, to develop improved methods for determining precise ERS-1 orbits using either short or long arc techniques. The SATAN programs, for the computation of satellite orbits using laser data were used. Several facilities were added to the original programs: the processing of PRARE range and altimeter data, and a number of algorithms that allow more flexible solutions by adjusting a number of additional parameters. The first part of this study, before the launch of ERS-1, was done with SEAS AT data. The accuracy of SEASAT orbits computed with PRARE simulated data has been determined. The effect of temporal distribution of tracking data along the arc and the extent to which altimetry can replace range data have been investigated. The second part starts with the computation of ERS-1 long arc solutions using laser data. Some aspects of modelling the two main forces affecting ERS-l's orbit are investigated. With regard to the gravitational forces, the adjustment of a set of geopotential coefficients has been considered. With respect to atmospheric drag, extensive research has been carried out on determining the influence on orbit accuracy of the measurements of solar fluxes (P10.7 indices) and geomagnetic activity (Kp indices) used by the atmospheric model in the computation of atmospheric density at satellite height. Two new short arc methods have been developed: the Constrained and the Bayesian method. Both methods are dynamic and consist of solving for the 6 osculating elements. Using different techniques, both methods overcome the problem of normal matrix ill- conditioning by constraining the solution. The accuracy and applicability of these methods are discussed and compared with the traditional non-dynamic TAR method.

  16. Modeling issues in precision orbit determination for Mars orbiter

    NASA Technical Reports Server (NTRS)

    Lemoine, Frank G.; Rosborough, George W.; Smith, David E.

    1990-01-01

    This paper examines the accuracy of recent Mars gravity models and the importance of perturbations due to the Mars radiation pressure and the Martian moons, Phobos and Deimos, on the trajectories of Mars orbiters. A linear orbit perturbation theory is used to characterize the patterns of gravity field near resonances for the Viking and Mariner 9 spacecraft. These resonances are shown to have considerable power and their potential for contributing to Mars gravity solutions is emphasized. It is shown that some of the same resonance orders which appear in the Viking orbits, dominate the radial orbit error spectrum for Mars Observer. Results of orbit determination simulations at the Goddard Space Flight Center show that the perturbations caused by the Martian moons and the Mars radiation pressure are larger than 0.1 mm/s, the expected precision of the Mars Observer Doppler tracking data. Tests with the Viking Doppler data indicate that best analysis of these data mandates the inclusion of the Phobos gravitational perturbation in the modeling of Viking spacecraft trajectories.

  17. A fuzzy clustering application to precise orbit determination

    NASA Astrophysics Data System (ADS)

    Soto, Jesus; Vigo Aguiar, M. Isabel; Flores-Sintas, Antonio

    2007-07-01

    In recent years, fuzzy logic techniques have been successfully applied in geodesy problems, in particular to GPS. The aim of this work is to test a fuzzy-logic method with an enhanced probability function as a tool to provide a reliable criteria for weighting scheme for satellite-laser-ranging (SLR) station observations, seeking to optimize their contribution to the precise orbit determination (POD) problem. The data regarding the stations were provided by the International Laser Ranging Service (ILRS), NASA/Crustal Dynamics Data Information System (CDDIS) provided the satellite data for testing the method. The software for processing the data is GEODYN II provided by NASA/Goddard Space Flight Center (GSFC). Factors to be considered in the fuzzy-logic clustering are: the total number of LAGEOS passes during the past 12 months, the stability measure of short- and long-term biases, the percentage of LAGEOS normal points that were accepted in CSR weekly LAGEOS analysis, and the RMS uncertainty of the station coordinates. A fuzzy-logic statistical method allows classifying the stations through a clear `degree of belonging' to each station group. This degree of belonging translates into a suitable weight to be assigned to each station in the global solutionE The first tests carried out showed improvements in the RMS of the global POD solution as well as individual stations, to within a few millimeters. We expect further work would lead to further improvements.

  18. Robust and precise baseline determination of distributed spacecraft in LEO

    NASA Astrophysics Data System (ADS)

    Allende-Alba, Gerardo; Montenbruck, Oliver

    2016-01-01

    Recent experience with prominent formation flying missions in Low Earth Orbit (LEO), such as GRACE and TanDEM-X, has shown the feasibility of precise relative navigation at millimeter and sub-millimeter levels using GPS carrier phase measurements with fixed integer ambiguities. However, the robustness and availability of the solutions provided by current algorithms may be highly dependent on the mission profile. The main challenges faced in the LEO scenario are the resulting short continuous carrier phase tracking arcs along with the observed rapidly changing ionospheric conditions, which in the particular situation of long baselines increase the difficulty of correct integer ambiguity resolution. To reduce the impact of these factors, the present study proposes a strategy based on a reduced-dynamics filtering of dual-frequency GPS measurements for precise baseline determination along with a dedicated scheme for integer ambiguity resolution, consisting of a hybrid sequential/batch algorithm based on the maximum a posteriori and integer aperture estimators. The algorithms have been tested using flight data from the GRACE, TanDEM-X and Swarm missions in order to assess their robustness to different formation and baseline configurations. Results with the GRACE mission show an average 0.7 mm consistency with the K/Ka-band ranging measurements over a period of more than two years in a baseline configuration of 220 km. Results with TanDEM-X data show an average of 3.8 mm consistency of kinematic and reduced-dynamic solutions in the along-track component over a period of 40 days in baseline configurations of 500 m and 75 km. Data from Swarm A and Swarm C spacecraft are largely affected by atmospheric scintillation and contain half cycle ambiguities. The results obtained under such conditions show an overall consistency between kinematic and reduced-dynamic solutions of 1.7 cm in the along-track component over a period of 30 days in a variable baseline of approximately 60

  19. Radiation force modeling for ICESat precision orbit determination

    NASA Astrophysics Data System (ADS)

    Webb, Charles Edward

    2007-12-01

    Precision orbit determination (POD) for the Ice, Cloud and land Elevation Satellite (ICESat) relies on an epoch-state batch filter, in which the dynamic models play a central role. Its implementation in the Multi-Satellite Orbit Determination Program (MSODP) originally included a box-and-wing model, representing the TOPEX/Poseidon satellite, to compute solar radiation forces. This "macro-model" has been adapted to the ICESat geometry, and additionally, extended to the calculation of forces induced by radiation reflected and emitted from the Earth. To determine the area and reflectivity parameters of the ICESat macro-model surfaces, a high-fidelity simulation of the radiation forces in low-Earth orbit was first developed, using a detailed model of the satellite, called the "micro-model". In this effort, new algorithms to compute such forces were adapted from a Monte Carlo Ray Tracing (MCRT) method originally designed to determine incident heating rates. After working with the vendor of the Thermal Synthesizer System (TSS) to implement these algorithms, a modified version of this software was employed to generate solar and Earth radiation forces for all ICESat orbit and attitude geometries. Estimates of the macro-model parameters were then obtained from a least-squares fit to these micro-model forces, applying an algorithm that also incorporated linear equality and inequality constraints to ensure feasible solutions. Three of these fitted solutions were selected for post-launch evaluation. Two represented conditions at the start and at the end of the mission, while the third comprised four separate solutions, one for each of the nominal satellite attitudes. In addition, three other sets of macro-model parameters were derived from area-weighted averaging of the micro-model reflectivities. They included solar-only and infrared-only spectral parameters, as well as a set combining these parameters. Daily POD solutions were generated with each of these macro-model sets

  20. Status of Precise Orbit Determination for Jason-2 Using GPS

    NASA Technical Reports Server (NTRS)

    Melachroinos, S.; Lemoine, F. G.; Zelensky, N. P.; Rowlands, D. D.; Pavlis, D. E.

    2011-01-01

    The JASON-2 satellite, launched in June 2008, is the latest follow-on to the successful TOPEX/Poseidon (T/P) and JASON-I altimetry missions. JASON-2 is equipped with a TRSR Blackjack GPS dual-frequency receiver, a laser retroreflector array, and a DORIS receiver for precise orbit determination (POD). The most recent time series of orbits computed at NASA GSFC, based on SLR/DORIS data have been completed using both ITRF2005 and ITRF2008. These orbits have been shown to agree radially at 1 cm RMS for dynamic vs SLRlDORIS reduced-dynamic orbits and in comparison with orbits produced by other analysis centers (Lemoine et al., 2010; Zelensky et al., 2010; Cerri et al., 2010). We have recently upgraded the GEODYN software to implement model improvements for GPS processing. We describe the implementation of IGS standards to the Jason2 GEODYN GPS processing, and other dynamical and measurement model improvements. Our GPS-only JASON-2 orbit accuracy is assessed using a number of tests including analysis of independent SLR and altimeter crossover residuals, orbit overlap differences, and direct comparison to orbits generated at GSFC using SLR and DORIS tracking, and to orbits generated externally at other centers. Tests based on SLR and the altimeter crossover residuals provide the best performance indicator for independent validation of the NASAlGSFC GPS-only reduced dynamic orbits. For the ITRF2005 and ITRF2008 implementation of our GPS-only obits we are using the IGS05 and IGS08 standards. Reduced dynamic versus dynamic orbit differences are used to characterize the remaining force model error and TRF instability. We evaluate the GPS vs SLR & DORIS orbits produced using the GEODYN software and assess in particular their consistency radially and the stability of the altimeter satellite reference frame in the Z direction for both ITRF2005 and ITRF2008 as a proxy to assess the consistency of the reference frame for altimeter satellite POD.

  1. Visual information throughout a reach determines endpoint precision.

    PubMed

    Ma-Wyatt, Anna; McKee, Suzanne P

    2007-05-01

    People make rapid, goal-directed movements to interact with their environment. Because these movements have consequences, it is important to be able to control them with a high level of precision and accuracy. Our hypothesis is that vision guides rapid hand movements, thereby enhancing their accuracy and precision. To test this idea, we asked observers to point to a briefly presented target (110 ms). We measured the impact of visual information on endpoint precision by using a shutter to close off view of the hand 50, 110 and 250 ms into the reach. We found that precision was degraded if the view of the hand was restricted at any time during the reach, despite the fact that the target disappeared long before the reach was completed. We therefore conclude that vision keeps the hand on the planned trajectory. We then investigated the effects of a perturbation of target position during the reach. For these experiments, the target remained visible until the reach was completed. The target position was shifted at 110, 180 or 250 ms into the reach. Early shifts in target position were easily compensated for, but late shifts led to a shift in the mean position of the endpoints; observers pointed to the center of the two locations, as a kind of best bet on the position of the target. Visual information is used to guide the hand throughout a reach and has a significant impact on endpoint precision.

  2. Precise Orbit Determination of GPS Satellites Using Phase Observables

    NASA Astrophysics Data System (ADS)

    Jee, Myung-Kook; Choi, Kyu-Hong; Park, Pil-Ho

    1997-12-01

    The accuracy of user position by GPS is heavily dependent upon the accuracy of satellite position which is usually transmitted to GPS users in radio signals. The real-time satellite position information directly obtained from broadcast ephimerides has the accuracy of 3 x 10 meters which is very unsatisfactory to measure 100km baseline to the accuracy of less than a few mili-meters. There are globally at present seven orbit analysis centers capable of generating precise GPS ephimerides and their orbit quality is of the order of about 10cm. Therefore, precise orbit model and phase processing technique were reviewed and consequently precise GPS ephimerides were produced after processing the phase observables of 28 global GPS stations for 1 day. Initial 6 orbit parameters and 2 solar radiation coefficients were estimated using batch least square algorithm and the final results were compared with the orbit of IGS, the International GPS Service for Geodynamics.

  3. Rapid and precise determination of ATP using a modified photometer

    USGS Publications Warehouse

    Shultz, David J.; Stephens, Doyle W.

    1980-01-01

    An inexpensive delay timer was designed to modify a commercially available ATP photometer which allows a disposable tip pipette to be used for injecting either enzyme or sample into the reaction cuvette. The disposable tip pipette is as precise and accurate as a fixed-needle syringe but eliminates the problem of sample contamination and decreases analytical time. (USGS)

  4. [Simultaneous determination of monosaccharides, disaccharides, oligosaccharides and sugar alcohols in foods by high performance liquid chromatography with evaporative light-scattering detection].

    PubMed

    Ding, Hongliu; Li, Can; Jin, Ping; Yuan, Lihong; Yao, Yongqing; Chen, Ying; Li, Pei

    2013-08-01

    A simple and efficient method was established based on high performance liquid chromatography (HPLC) to separate and detect thirteen analytes of monosaccharides, disaccharides, oligosaccharides and sugar alcohols (xylose, fructose, glucose, sucrose, maltose, lactose, 1-kestose, nystose, 1F-fructofuranosyl nystose, erythritol, mannitol, xylitol, maltitol) in foods. The separation was performed on an NH2 column with the gradient elution of acetonitrile-water as the mobile phases. The analytes were detected by an evaporative light-scattering detector (ELSD). All the thirteen sugars had good linearities within 0.1 - 5 g/L with the correlation coefficients between 0.9901 - 0.9996. The limits of detection (LOD) were all less than 0.1 g/L. The precisions of the method expressed as RSDs were in the range of 2.69% -7.21%. The recoveries of the thirteen analytes spiked in real samples ranged from 96.1% to 105.2%. This method was applied to the actual sample testings and the results showed the food labels were greatly different from the actual compositions.

  5. High precision photon flux determination for photon tagging experiments

    SciTech Connect

    Teymurazyan, A; Ahmidouch, A; Ambrozewicz, P; Asratyan, A; Baker, K; Benton, L; Burkert, V; Clinton, E; Cole, P; Collins, P; Dale, D; Danagoulian, S; Davidenko, G; Demirchyan, R; Deur, A; Dolgolenko, A; Dzyubenko, G; Ent, R; Evdokimov, A; Feng, J; Gabrielyan, M; Gan, L; Gasparian, A; Glamazdin, A; Goryachev, V; Hardy, K; He, J; Ito, M; Jiang, L; Kashy, D; Khandaker, M; Kolarkar, A; Konchatnyi, M; Korchin, A; Korsch, W; Kosinov, O; Kowalski, S; Kubantsev, M; Kubarovsky, V; Larin, I; Lawrence, D; Li, X; Martel, P; Matveev, V; McNulty, D; Mecking, B; Milbrath, B; Minehart, R; Miskimen, R; Mochalov, V; Nakagawa, I; Overby, S; Pasyuk, E; Payen, M; Pedroni, R; Prok, Y; Ritchie, B; Salgado, C; Shahinyan, A; Sitnikov, A; Sober, D; Stepanyan, S; Stevens, W; Underwood, J; Vasiliev, A; Vishnyakov, V; Wood, M; Zhou, S

    2014-07-01

    The Jefferson Laboratory PrimEx Collaboration has developed and implemented a method to control the tagged photon flux in photoproduction experiments at the 1% level over the photon energy range from 4.9 to 5.5 GeV. This method has been successfully implemented in a high precision measurement of the neutral pion lifetime. Here, we outline the experimental equipment and the analysis techniques used to accomplish this. These include the use of a total absorption counter for absolute flux calibration, a pair spectrometer for online relative flux monitoring, and a new method for post-bremsstrahlung electron counting.

  6. Precise Orbit Determination for the GEOSAT Follow-On Spacecraft

    NASA Technical Reports Server (NTRS)

    Lemoine, Frank G.; Rowlands, David D.; Zelensky, Nikita P.; Luthcke, Scott B.; Cox, Christopher M.; Marr, Gregory C.

    1999-01-01

    The US Navy's GEOSAT Follow-On spacecraft was launched on February 10, 1998 with its primary mission objective to map the oceans using a radar altimeter. The spacecraft tracking complement consists of GPS receivers, a laser retroreflector and Doppler beacons. Since the GPS receivers have not yet returned reliable data, the only means of providing high-quality precise orbits has been though satellite laser ranging (SLR). SLR has tracked the spacecraft since April 22, 1998, and an average of 7 passes per day have been obtained from US and foreign stations. Since the predicted radial orbit error due to the gravity field is only two to three cm, the largest contributor to the high SLR residuals (10 cm) is the mismodelling of the non-conservative forces. The SLR residuals show a clear correlation with beta prime (solar elevation) angle, peaking in mid-August 1998 when the beta prime angle reached -80 to -90 degrees. We report in this paper on the analysis of the GFO tracking data (SLR, Doppler, and if available GPS) using GEODYN, and on the tuning of the non-conservative force model and the gravity model using these data.

  7. Precise determination of neutron binding energy of 64Cu

    NASA Astrophysics Data System (ADS)

    Telezhnikov, S. A.; Granja, C.; Honzatko, J.; Pospisil, S.; Tomandl, I.

    2016-05-01

    The neutron binding energy in 64Cu has been accurately measured in thermal neutron capture. A composite target of natural Cu and NaCl was used on a high flux neutron beam using a large measuring time. The γ-ray spectrum emitted in the ( n, γ) reaction was measured with a HPGe detector in large statistics (up to 106 events per channel). Intrinsic limitations of HPGe detectors, which restrict the accuracy of energy calibration, were determined. The value B n of 64Cu was determined as 7915.867(24) keV.

  8. Determining the isomeric heterogeneity of neutral oligosaccharide-alditols of bovine submaxillary mucin using negative ion traveling wave ion mobility mass spectrometry.

    PubMed

    Li, Hongli; Bendiak, Brad; Siems, William F; Gang, David R; Hill, Herbert H

    2015-02-17

    Negative ions produced by electrospray ionization were used to evaluate the isomeric heterogeneity of neutral oligosaccharide-alditols isolated from bovine submaxillary mucin (BSM). The oligosaccharide-alditol mixture was preseparated on an off-line high-performance liquid chromatography (HPLC) column, and the structural homogeneity of individual LC fractions was investigated using a Synapt G2 traveling wave ion mobility spectrometer coupled between quadupole and time-of-flight mass spectrometers. Mixtures of isomers separated by both chromatography and ion mobility spectrometry were studied. Tandem mass spectrometry (MS/MS) of multiple mobility peaks having the same mass-to-charge ratio (m/z) demonstrated the presence of different structural isomers and not differences in ion conformations due to charge site location. Although the oligosaccharide-alditol mixture was originally separated by HPLC, multiple ion mobility peaks due to structural isomers were observed for a number of oligosaccharide-alditols from single LC fractions. The collision-induced dissociation cells located in front of and after the ion mobility separation device enabled oligosaccharide precursor or product ions to be separated by ion mobility and independent fragmentation spectra to be acquired for isomeric carbohydrate precursor or product ions. MS/MS spectra so obtained for independent mobility peaks at a single m/z demonstrated the presence of structural variants or stereochemical isomers having the same molecular formula. This was observed both for oligosaccharide precursor and product ions. In addition, mobilities of both [M - H](-) and [M + Cl](-) ions, formed by adding NH4OH or NH4Cl to the electrospray solvent, were examined and compared for selected oligosaccharide-alditols. Better separation among structural isomers appeared to be achieved for some [M + Cl](-) anions.

  9. A reduced-dynamic technique for precise orbit determination

    NASA Technical Reports Server (NTRS)

    Wu, S. C.; Yunck, T. P.; Thornton, C. L.

    1990-01-01

    Observations of the Global Positioning System (GPS) will enable a reduced-dynamic technique for achieving subdecimeter orbit determination of earth-orbiting satellites. With this technique, information on the transition between satellite states at different observing times is furnished by both a formal dynamic model and observed satellite positional change (which is inferred kinematically from continuous GPS carrier-phase data). The relative weighting of dynamic and kinematic information can be freely varied. Covariance studies show that in situations where observing geometry is poor and the dynamic model is good, the model dominates determination of the state transition; where the dynamic model is poor and the geometry strong, carrier phase governs the determination of the transition. When neither kinematic nor dynamic information is clearly superior, the reduced-dynamic combination of the two can substantially improve the orbit-determination solution. Guidelines are given here for selecting a near-optimal weighting for the reduced-dynamic solution, and sensitivity of solution accuracy to this weighting is examined.

  10. Structural determination of oligosaccharides derived from lipooligosaccharide of Neisseria gonorrhoeae F62 by chemical, enzymatic, and two-dimensional NMR methods

    SciTech Connect

    Yamasaki, Ryohei; Nasholds, W.; Griffiss, J.M. Veterans Administration Medical Center, San Francisco, CA ); Bacon, B.E. ); Schneider, H. )

    1991-10-29

    F62 LOS of Neisseria gonorrhoeae consists of two major LOS components; the higher and smaller molecular weight (MW) components were recognized by MAbs 1-1-M and 3F11 respectively. Base-line separation of the two major oligosaccharide (OS) components from F62 LOS was achieved by Bio-Gel P-4 chromatography after dephosphorylation of the OS mixture. The structures of the two major OSs were studied by chemical, enzymatic, and 2D NMR methods as well as methylation followed by GC/MS analysis. The OS component derived from the MAb 1-1-M defined LOS component was determined to have a V{sup 3}-({beta}-N-acetylgalactosaminyl)neolactotetraose structure at one of its nonreducing termini. The OS component derived from the MAb 3F11 defined LOS component did not have a GalNAc residue. The rest of its structure was identical to that of the OS-1, and a neolactotetraose is exposed at its nonreducing terminus.

  11. Towards More Precise Determinations of the Quark Mixing Phase β.

    PubMed

    Ligeti, Zoltan; Robinson, Dean J

    2015-12-18

    We derive a new flavor symmetry relation for the determination of the weak phase β=ϕ_{1} from time-dependent CP asymmetries and B→J/ψP decay rates. In this relation, the contributions to sin2β proportional to V_{ub} are parametrically suppressed compared to the contributions in the B→J/ψK^{0} time-dependent CP asymmetry alone. This relation uses only SU(3) flavor symmetry, and does not require further diagrammatic assumptions. The current data either fluctuate at the 2σ level from expectations, or may hint at effects of unexpected magnitude from contributions proportional to V_{ub} or from isospin breaking.

  12. Application of semianalytical satellite theories to precision orbit determination

    NASA Technical Reports Server (NTRS)

    Cefola, P. J.

    1978-01-01

    Those factors which limit the usefulness of current implementations of the semianalytical approach are discussed. Numerical and analytical enhancements to the semianalytical approach are considered. A simple mathematical model is provided to estimate the computational speed of a semianalytical theory employing the suggested enhancements. The model can factor in current experience with semianalytical theories (integration stepsizes, quadrature orders, speed of recursive formulations, etc.) and the characteristics of the particular output requirement (observation span (or orbit determination interval), observation rate, observation model, etc.). Comparisons with numerical integration are suggested.

  13. A Precision Determination of the Φ Meson Mass

    NASA Astrophysics Data System (ADS)

    Pellinen, A.; Roos, M.

    1982-05-01

    From compilations of Kbar K mass histograms containing 25 080 phi mesons and bar pp mass histograms containing 33 260 ω mesons we determine the phi and the ω masses. In our fits the widths of the resonances are fixed and the mass and the resolution are free parameters. We then extrapolate to zero resolution with Orear's effective variance method which takes into account both mass and resolution errors. The results are mphi = (1019.67 ± 0.17) MeV and mω = (782.51 ± 0.82) MeV, where the errors are almost entirely systematic.

  14. Precision orbit determination at the NASA Goddard Space Flight Center

    NASA Technical Reports Server (NTRS)

    Putney, B.; Kolenkiewicz, R.; Smith, D.; Dunn, P.; Torrence, M. H.

    1990-01-01

    This paper describes the GEODYN computer program developed by the Geodynamics Branch at the NASA Goddard Space Flight Center and outlines the procedure for accurate satellite orbit and tracking-data analyses. The capabilities of the program allow the development of gravity fields as large as 90 by 90, and a complete modeling of tidal parameters. It is also feasible to numerically integrate a continuous orbit of a satellite such as Lageos for up to 12 years. The evolution of the orbit can be studied, and, by comparison with locally determined orbits, force model improvements can be made. The GEODYN flow diagrams are presented.

  15. Precision VLBI astrometry: Instrumentation, algorithms and pulsar parallax determination

    NASA Astrophysics Data System (ADS)

    Deller, A. T.

    2009-02-01

    (Abridged) This thesis describes the development of DiFX, the first general-purpose software correlator for radio interferometry, and its use with the Australian Long Baseline Array (LBA) to complete the largest VLBI pulsar astrometry program undertaken to date in the Southern Hemisphere. This two year astrometry program has resulted in the measurement of seven new pulsar parallaxes, more than trebling the number of measured VLBI pulsar parallaxes in the Southern Hemisphere. The measurements included a determination of the distance and transverse velocity of PSR J0437-4715 with better than 1% accuracy, enabling improved tests of General Relativity, and the first significant measurement of parallax for the famous double pulsar system PSR J0737-3039A/B, which will allow tests of General Relativity in this system to proceed to the 0.01% level. The DiFX software correlator developed to enable this science has been extensively tested and is now an integral part of the upgraded LBA Major National Research Facility; furthermore, it has been selected to facilitate a substantial sensitivity upgrade for the US Very Long Baseline Array.

  16. [Determination of fructo-oligosaccharides in milk powder by high performance liquid chromatography-quadrupole/electrostatic field orbitrap high resolution mass spectrometry].

    PubMed

    Liu, Yun; Ding, Tao; Xu, Suli; Wu, Bin; Shen, Chongyu; Zhang, Rui; Wang, Yan; Fei, Xiaoqing

    2015-10-01

    A method of high performance liquid chromatography-quadrupole/electrostatic field Orbitrap high resolution mass spectrometry (HPLC-Q/Orbitrap MS) was developed to determine fructo-oligosaccharides in milk powder. The milk powder samples were dissolved in deionized water. Subsequently, an aqueous solution of zinc acetate was used to precipitate protein. After centrifugation, the final aqueous solution was filtered by a polytetrafluoroethylene (PTFE) membrane with pore size of 0.22 μm. The analytes were separated on a Carbohydrate column (100 mm x 2.1 mm, 2.6 μm) through gradient elution with the combination of acetonitrile and 0.1% formic acid aqueous solution. The target-MS/MS templates were performed at isolation window of m/z 4.0 and collision energy of 30 eV in positive mode to extract the accurate product ion mass of analytes. Under the optimal condition, 1-kestose (GF2), nystose (GF3) and 1-F-β-fructofuranosyl nystose (GF4) were well separated and the accuracy of extracted mass routinely detected was below 5 x 10(-6) (5 ppm). The whole analysis time is only ten minutes. The detection limits for GF2 and GF3 were 100 μg/kg, and the detection limit for GF4 was 55 μg/kg. Good linearities were obtained in their respective linear ranges with correlation coefficients higher than 0.998. The average recoveries at three spiked levels (5, 10 and 20 mg/kg) were in the range of 75.8%-107.3% and the relative standard deviations (RSDs) were in the range of 1.6% - 8.3%. The proposed method is simple, sensitive, fast and only in need of precipitation of proteins. The interference of matrix can be eliminated through the selection of product ion. The results were convenient and reliable and thus can be used in the large batch determination of any milk powder. PMID:26930960

  17. [Determination of fructo-oligosaccharides in milk powder by high performance liquid chromatography-quadrupole/electrostatic field orbitrap high resolution mass spectrometry].

    PubMed

    Liu, Yun; Ding, Tao; Xu, Suli; Wu, Bin; Shen, Chongyu; Zhang, Rui; Wang, Yan; Fei, Xiaoqing

    2015-10-01

    A method of high performance liquid chromatography-quadrupole/electrostatic field Orbitrap high resolution mass spectrometry (HPLC-Q/Orbitrap MS) was developed to determine fructo-oligosaccharides in milk powder. The milk powder samples were dissolved in deionized water. Subsequently, an aqueous solution of zinc acetate was used to precipitate protein. After centrifugation, the final aqueous solution was filtered by a polytetrafluoroethylene (PTFE) membrane with pore size of 0.22 μm. The analytes were separated on a Carbohydrate column (100 mm x 2.1 mm, 2.6 μm) through gradient elution with the combination of acetonitrile and 0.1% formic acid aqueous solution. The target-MS/MS templates were performed at isolation window of m/z 4.0 and collision energy of 30 eV in positive mode to extract the accurate product ion mass of analytes. Under the optimal condition, 1-kestose (GF2), nystose (GF3) and 1-F-β-fructofuranosyl nystose (GF4) were well separated and the accuracy of extracted mass routinely detected was below 5 x 10(-6) (5 ppm). The whole analysis time is only ten minutes. The detection limits for GF2 and GF3 were 100 μg/kg, and the detection limit for GF4 was 55 μg/kg. Good linearities were obtained in their respective linear ranges with correlation coefficients higher than 0.998. The average recoveries at three spiked levels (5, 10 and 20 mg/kg) were in the range of 75.8%-107.3% and the relative standard deviations (RSDs) were in the range of 1.6% - 8.3%. The proposed method is simple, sensitive, fast and only in need of precipitation of proteins. The interference of matrix can be eliminated through the selection of product ion. The results were convenient and reliable and thus can be used in the large batch determination of any milk powder.

  18. Systematic uncertainties in the precise determination of the strangeness magnetic moment of the nucleon

    SciTech Connect

    D.B. Leinweber; S. Boinepalli; A.W. Thomas; A.G. Williams; R.D. Young; J.B. Zhang; J.M. Zanotti

    2004-06-01

    Systematic uncertainties in the recent precise determination of the strangeness magnetic moment of the nucleon are identified and quantified. In summary, G{sub M}{sup s} = -0.046 {+-} 0.019 {micro}{sub N}.

  19. Precise Orbit Determination of the Lunar Reconnaissance Orbiter and inferred gravity field information

    NASA Astrophysics Data System (ADS)

    Maier, A.; Baur, O.; Krauss, S.

    2014-04-01

    This contribution deals with Precise Orbit Determination of the Lunar Reconnaissance Orbiter, which is tracked with optical laser ranges in addition to radiometric Doppler range-rates and range observations. The optimum parameterization is assessed by overlap analysis tests that indicate the inner precision of the computed orbits. Information about the very long wavelengths of the lunar gravity field is inferred from the spacecraft positions. The NASA software packages GEODYN II and SOLVE were used for orbit determination and gravity field recovery [1].

  20. Evaluation of ion mobility-mass spectrometry for determining the isomeric heterogeneity of oligosaccharide-alditols derived from bovine submaxillary mucin.

    PubMed

    Li, Hongli; Bendiak, Brad; Kaplan, Kimberly; Davis, Eric; Siems, William F; Hill, Herbert H

    2013-10-15

    Rapid separation and independent analysis of isomeric species are needed for the structural characterization of carbohydrates in glycomics research. Ion mobility-mass spectrometry techniques were used to examine a series of isomeric neutral oligosaccharide-alditols derived from bovine submaxillary mucin. Several analytical techniques were employed: (1) off line separation of the oligosaccharide-alditol mixture by HPLC; (2) direct and rapid evaluation of isomeric heterogeneity of oligosaccharides by electrospray ionization-ion mobility-time of flight mass spectrometry; and (3) mobility-selected MS(2) and MS(3) to evaluate isomeric mobility peaks by dual gate ion mobility-tandem mass spectrometry. Multiple isomeric ion mobility peaks were observed for the majority of oligosaccharide-alditols, which was achieved on the millisecond time scale after LC separation. Fragmentation spectra obtained from the collision-induced dissociation of isomeric precursor ions could be essentially identical, or dramatically different for a given precursor m/z using the dual-gate ion mobility quadrupole ion trap mass spectrometer. This further confirmed the need for rapid physical resolution of isomeric precursor species prior to their tandem mass spectral analysis.

  1. Profiles of human milk oligosaccharides and production of some human milk oligosaccharides in transgenic animals.

    PubMed

    Prieto, Pedro Antonio

    2012-05-01

    During the decade of the 1990s and the first years of the current century, our group embarked on a project to study and synthesize human milk oligosaccharides. This report describes 2 unexpected collateral observations from that endeavor. The first observation was the detection and confirmation of 2 rare neutral human milk oligosaccharides profiles that were uncovered while assessing oligosaccharide content in hundreds of samples of human milk. One of these lacked fucosylated structures altogether, and the other lacked the oligosaccharide 3-fucosyllactose [Galβ1-4(Fucα1-3)Glc]. We used glycoconjugate probes to determine whether the unusual profiles were mirrored by fucosylation of milk glycoproteins. The results show that the lack of fucosylated oligosaccharides in these samples corresponds to the absence of equivalent fucosylated motifs in milk glycoproteins. The second finding was a shortened and distinct lactation process in transgenic rabbits expressing the human fucosyltransferase 1. During the first day of lactation, these animals expressed milk that contained both lactose and 2'-fucosylactose, but on the second day, the production of milk was severely diminished, and by the fourth day, no lactose was detected in their milk. Meanwhile, the concentration of fucosylated glycoproteins increased from the onset of lactation through its premature termination. These 2 findings may shed light on the glycobiology of milk and perhaps on mammary gland differentiation.

  2. Oligosaccharides in Food and Agriculture

    NASA Astrophysics Data System (ADS)

    Collins, Michelle E.; Rastall, Robert A.

    Oligosaccharides are an integral part of the daily diet for humans and animals. They are primarily used for their nutritional properties, however they are currently receiving much attention due to their physiological effect on the microflora of the gastrointestinal tract. Galacto-oligosaccharides and the fructan-type oligosaccharides, namely FOS and inulin are well established as beneficial to the host and are classified as prebiotic based on data from clinical studies. These compounds dominate this sector of the market, although there are oligosaccharides emerging which have produced very interesting in vitro results in terms of prebiotic status and human trials are required to strengthen the claim. Such compounds include pectic oligosaccharides, gluco-oligosaccharides, gentio-oligosaccharides, kojio-oligosaccharides, and alternan oligosaccharides. The raw materials for production of these prebiotic compounds are derived from natural sources such as plants but also from by products of the food processing industry. In addition to being prebiotic these compounds can be incorporated into foodstuffs due to the physiochemical properties they possess.

  3. Accurate and precise determination of isotopic ratios by MC-ICP-MS: a review.

    PubMed

    Yang, Lu

    2009-01-01

    For many decades the accurate and precise determination of isotope ratios has remained a very strong interest to many researchers due to its important applications in earth, environmental, biological, archeological, and medical sciences. Traditionally, thermal ionization mass spectrometry (TIMS) has been the technique of choice for achieving the highest accuracy and precision. However, recent developments in multi-collector inductively coupled plasma mass spectrometry (MC-ICP-MS) have brought a new dimension to this field. In addition to its simple and robust sample introduction, high sample throughput, and high mass resolution, the flat-topped peaks generated by this technique provide for accurate and precise determination of isotope ratios with precision reaching 0.001%, comparable to that achieved with TIMS. These features, in combination with the ability of the ICP source to ionize nearly all elements in the periodic table, have resulted in an increased use of MC-ICP-MS for such measurements in various sample matrices. To determine accurate and precise isotope ratios with MC-ICP-MS, utmost care must be exercised during sample preparation, optimization of the instrument, and mass bias corrections. Unfortunately, there are inconsistencies and errors evident in many MC-ICP-MS publications, including errors in mass bias correction models. This review examines "state-of-the-art" methodologies presented in the literature for achievement of precise and accurate determinations of isotope ratios by MC-ICP-MS. Some general rules for such accurate and precise measurements are suggested, and calculations of combined uncertainty of the data using a few common mass bias correction models are outlined.

  4. Precise Astronomical Azimuth Determination By Qdaedalus System to the Sun, Moon, and Planets in Daytime Conditions

    NASA Astrophysics Data System (ADS)

    Völgyesi, L.; Tóth, G.; Bürki, B.; Guillaume, S.

    2014-12-01

    The traditional method of astronomical azimuth determination involves measurements at night to stars (Polaris). QDAEDALUS, developed by the team of the Geodesy and Geodynamics Lab (GGL, led by Prof. M. Rothacher) of ETH Zürich is a unique system combining Total Stations and modern CCD technique. It provides precise astronomical azimuths within 15 minutes of observation time at night. Furthermore, observations in daytime conditions are a challenging requirement in practice of Astro-geodetic azimuth determination. In order to perform daylight measurements, the QDAEDALUS system has been improved by allowing precise azimuth measurements to Sun, Moon, and Planets in daylight conditions by expanding the processing software with precise solar, lunar, and planetary ephemerides. With such functionality the system has a unique capability to measure astronomical azimuths with an accuracy of 0.3-0.5 arcsecs in normal daylight conditions within 20 to 25 minutes of measurement time.

  5. Preparation and antibacterial activity of oligosaccharides derived from dandelion.

    PubMed

    Qian, Li; Zhou, Yan; Teng, Zhaolin; Du, Chun-Ling; Tian, Changrong

    2014-03-01

    In this study, we prepared oligosaccharides from dandelion (Taraxacum officinale) by hydrolysis with hydrogen peroxide (H2O2) and investigated their antibacterial activity. The optimum hydrolysis conditions, as determined using the response surface methodology, were as follows: reaction time, 5.12h; reaction temperature, 65.53 °C and H2O2 concentration, 3.16%. Under these conditions, the maximum yield of the oligosaccharides reached 25.43%. The sugar content in the sample was 96.8%, and the average degree of polymerisation was approximately 9. The oligosaccharides showed high antibacterial activity against Escherichia coli, Bacillus subtilis and Staphylococcus aureus, indicating that dandelion-derived oligosaccharides have the potential to be used as antibacterial agents.

  6. Stable isotope labeling of oligosaccharide cell surface antigens

    SciTech Connect

    Unkefer, C.J.; Silks, L.A. III; Martinez, R.A.

    1998-12-31

    The overall goal of this Laboratory Directed Research and Development (LDRD) project was to develop new methods for synthesis of {sup 13}C-labeled oligosaccharides that are required for nuclear magnetic resonance (NMR) studies of their solution conformation. Oligosaccharides are components of the cell`s outer surface and are involved in important processes such as cell-cell recognition and adhesion. Recently, Danishefsky and coworkers at Slone-Kettering Cancer Center developed a method for the solid-phase chemical synthesis of oligosaccharides. The specific goal of this LDRD project was to prepare uniform {sup 13}C-labeled aldohexose precursors required for the solid-phase synthesis of the Lewis blood-group antigenic determinants. We report the synthesis of {sup 13}C-labeled D-glucal, D-galactal and Fucosyl precursors. We have been collaborating with the Danishefsky group on the synthesis of the Lewis oligosaccharides and the NMR analysis of their solution conformation.

  7. Precise characterization of Guatemalan obsidian sources, and source determination of artifacts from Quirigua

    SciTech Connect

    Stross, F.H.; Sheets, P.; Asaro, F.; Michel, H.V.

    1983-01-01

    For the determination of provenience of obsidian artifacts, precise and accurate measurements of composition patterns of the geologic sources are necessary for definitive and cost-effective assignments. Inter-comparison of data from different laboratories is often difficult. Suggestions for maximizing the usefulness of data already in the literature are made, contributions to a useful data bank of source composition patterns are recorded, and provenience determinations of 30 artifacts excavated in Quirigua, Guatemala are presented to exemplify the technique.

  8. Sucrose and Related Oligosaccharides

    NASA Astrophysics Data System (ADS)

    Eggleston, Gillian

    Sucrose (α-D-glucopyranosyl-(1↔2)-β-D-fructofuranoside) is the most common low-molecular-weight sugar found in the plant kingdom. It is ubiquitously known as common table sugar and primarily produced industrially from sugarcane (Saccharum officinarum) and sugar beet (Beta vulgaris); the basics of the industrial manufacture of sucrose are outlined in this chapter. Commercial sucrose has a very high purity (> 99.9%) making it one of the purest organic substances produced on an industrial scale. Value-addition to sucrose via chemical and biotechnological reactions is becoming more important for the diversification of the sugar industry to maintain the industries' competitiveness in a world increasingly turning to a bio-based economy. The basis for the chemical reactivity of sucrose is the eight hydroxyl groups present on the molecule, although, sucrose chemical reactivity is regarded as difficult. Increasing use of enzymatic biotechnological techniques to derivatize sucrose is expected, to add special functionalities to sucrose products like biodegradability, biocompatibility, and non-toxicity. Analysis of sucrose by colorimetric, enzymatic, oxidation-reduction and chromatography methods are discussed. Oligosaccharides related to sucrose are outlined in detail and include sucrose-based plant, honey and in vitro oligosaccharides.

  9. Highly sensitive derivatization reagents possessing positively charged structures for the determination of oligosaccharides in glycoproteins by high-performance liquid chromatography electrospray ionization tandem mass spectrometry.

    PubMed

    Min, Jun Zhe; Nagai, Keisuke; Shi, Qing; Zhou, Wenjun; Todoroki, Kenichiro; Inoue, Koichi; Lee, Yong-Ill; Toyo'oka, Toshimasa

    2016-09-23

    We have developed three kinds of novel derivatization reagents (4-CEBTPP, 4-CBBTPP, 5-COTPP) with triphenylphosphine (TPP) as a basic structure carrying a permanent positive charge for resolution of the oligosaccharides in glycoprotein using high-performance liquid chromatography electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS). The synthesized reagents reacted with the sialylglycosylamine of the sialylglycopeptide after treatment by PNGase F. The final derivatives were analyzed by ESI-MS and sensitively detected in the selected reaction monitoring (SRM) mode. Furthermore, the limits of detection (S/N=3) on the SRM chromatograms were at the fmol level (30fmol). Therefore, we used the limit of detection of the reagent products detected by the SRM and evaluated the utility of each reagent. Among the reagents, the positively charged 4-CEBTPP derivative's peak area was the highest; 4-CEBTPP with a positively charged structure showed about a 20 times greater sensitivity for the glycosylamine of the SGP product compared to the conventional fluorescence reagent, Fmoc-Cl. In addition, various fragment ions based on the carbohydrate units also appeared in the MS/MS spectra. Among the fragment ions, m/z 627.37 (CE=40eV) corresponding to 4-CEBTPP-GlcNAc and m/z 120.09 (CE=100eV) corresponding to 4-CEBTPP are the most important ones for identifying the oligosaccharide. 4-CEBTPP-SGA was easily identified by the selected-ion chromatogram in the product ion scan (m/z 120.09) and in the precursor ion scan (m/z 627.37) by MS/MS detection. The derivatized analytes have a high ionization efficiency and they are detected with a high sensitivity in the electrospray ionization. The novel derivatization reagent with a multi-function provided a higher sensitivity for the oligosaccharide analysis, as well as a better specificity and feasibility. Furthermore, several oligosaccharides in fetuin and ribonuclease B were successfully identified by the proposed procedure. PMID

  10. The GLAS Algorithm Theoretical Basis Document for Precision Orbit Determination (POD)

    NASA Technical Reports Server (NTRS)

    Rim, Hyung Jin; Yoon, S. P.; Schultz, Bob E.

    2013-01-01

    The Geoscience Laser Altimeter System (GLAS) was the sole instrument for NASA's Ice, Cloud and land Elevation Satellite (ICESat) laser altimetry mission. The primary purpose of the ICESat mission was to make ice sheet elevation measurements of the polar regions. Additional goals were to measure the global distribution of clouds and aerosols and to map sea ice, land topography and vegetation. ICESat was the benchmark Earth Observing System (EOS) mission to be used to determine the mass balance of the ice sheets, as well as for providing cloud property information, especially for stratospheric clouds common over polar areas. The GLAS instrument operated from 2003 to 2009 and provided multi-year elevation data needed to determine changes in sea ice freeboard, land topography and vegetation around the globe, in addition to elevation changes of the Greenland and Antarctic ice sheets. This document describes the Precision Orbit Determination (POD) algorithm for the ICESat mission. The problem of determining an accurate ephemeris for an orbiting satellite involves estimating the position and velocity of the satellite from a sequence of observations. The ICESatGLAS elevation measurements must be very accurately geolocated, combining precise orbit information with precision pointing information. The ICESat mission POD requirement states that the position of the instrument should be determined with an accuracy of 5 and 20 cm (1-s) in radial and horizontal components, respectively, to meet the science requirements for determining elevation change.

  11. Central difference predictive filter for attitude determination with low precision sensors and model errors

    NASA Astrophysics Data System (ADS)

    Cao, Lu; Chen, Xiaoqian; Misra, Arun K.

    2014-12-01

    Attitude determination is one of the key technologies for Attitude Determination and Control System (ADCS) of a satellite. However, serious model errors may exist which will affect the estimation accuracy of ACDS, especially for a small satellite with low precision sensors. In this paper, a central difference predictive filter (CDPF) is proposed for attitude determination of small satellites with model errors and low precision sensors. The new filter is proposed by introducing the Stirling's polynomial interpolation formula to extend the traditional predictive filter (PF). It is shown that the proposed filter has higher accuracy for the estimation of system states than the traditional PF. It is known that the unscented Kalman filter (UKF) has also been used in the ADCS of small satellites with low precision sensors. In order to evaluate the performance of the proposed filter, the UKF is also employed to compare it with the CDPF. Numerical simulations show that the proposed CDPF is more effective and robust in dealing with model errors and low precision sensors compared with the UKF or traditional PF.

  12. Genetic mechanisms of prebiotic oligosaccharide metabolism in probiotic microbes.

    PubMed

    Goh, Yong Jun; Klaenhammer, Todd R

    2015-01-01

    Recent insights into the relationship between the human gut and its resident microbiota have revolutionized our appreciation of this symbiosis and its impact on health and disease development. Accumulating evidence on probiotic and prebiotic interventions has demonstrated promising effects on promoting gastrointestinal health by modulating the microbiota toward the enrichment of beneficial microorganisms. However, the precise mechanisms of how prebiotic nondigestible oligosaccharides are metabolized by these beneficial microbes in vivo remain largely unknown. Genome sequencing of probiotic lactobacilli and bifidobacteria has revealed versatile carbohydrate metabolic gene repertoires dedicated to the catabolism of various oligosaccharides. In this review, we highlight recent findings on the genetic mechanisms involved in the utilization of prebiotic fructooligosaccharides, β-galactooligosaccharides, human milk oligosaccharides, and other prebiotic candidates by these probiotic microbes.

  13. Accuracy and precision of protein-ligand interaction kinetics determined from chemical shift titrations.

    PubMed

    Markin, Craig J; Spyracopoulos, Leo

    2012-12-01

    NMR-monitored chemical shift titrations for the study of weak protein-ligand interactions represent a rich source of information regarding thermodynamic parameters such as dissociation constants (K ( D )) in the micro- to millimolar range, populations for the free and ligand-bound states, and the kinetics of interconversion between states, which are typically within the fast exchange regime on the NMR timescale. We recently developed two chemical shift titration methods wherein co-variation of the total protein and ligand concentrations gives increased precision for the K ( D ) value of a 1:1 protein-ligand interaction (Markin and Spyracopoulos in J Biomol NMR 53: 125-138, 2012). In this study, we demonstrate that classical line shape analysis applied to a single set of (1)H-(15)N 2D HSQC NMR spectra acquired using precise protein-ligand chemical shift titration methods we developed, produces accurate and precise kinetic parameters such as the off-rate (k ( off )). For experimentally determined kinetics in the fast exchange regime on the NMR timescale, k ( off ) ~ 3,000 s(-1) in this work, the accuracy of classical line shape analysis was determined to be better than 5 % by conducting quantum mechanical NMR simulations of the chemical shift titration methods with the magnetic resonance toolkit GAMMA. Using Monte Carlo simulations, the experimental precision for k ( off ) from line shape analysis of NMR spectra was determined to be 13 %, in agreement with the theoretical precision of 12 % from line shape analysis of the GAMMA simulations in the presence of noise and protein concentration errors. In addition, GAMMA simulations were employed to demonstrate that line shape analysis has the potential to provide reasonably accurate and precise k ( off ) values over a wide range, from 100 to 15,000 s(-1). The validity of line shape analysis for k ( off ) values approaching intermediate exchange (~100 s(-1)), may be facilitated by more accurate K ( D ) measurements

  14. High-Precision Microwave Spectroscopy of Muonium for Determination of Muonic Magnetic Moment

    NASA Astrophysics Data System (ADS)

    Torii, H. A.; Higashi, Y.; Higuchi, T.; Matsuda, Y.; Mizutani, T.; Tajima, M.; Tanaka, K. S.; Ueno, Y.; Fukao, Y.; Iinuma, H.; Ikedo, Y.; Kadono, R.; Kawamura, N.; Koda, A.; Kojima, K. M.; Mibe, T.; Miyake, Y.; Nagamine, K.; Nishiyama, K.; Ogitsu, T.; Okubo, R.; Saito, N.; Sasaki, K.; Shimomura, K.; Strasser, P.; Sugano, M.; Toyoda, A.; Ueno, K.; Yamamoto, A.; Yoshida, M.; Ishida, K.; Iwasaki, M.; Kamigaito, O.; Tomono, D.; Kanda, S.; Kubo, K.; Aoki, M.; Torikai, E.; Kawall, D.

    2016-02-01

    The muonium atom is a system suitable for precision measurements for determination of muon’s fundamental properties as well as for the test of quantum electrodynamics (QED). A microwave spectroscopy experiment of this exotic atom is being prepared at J-PARC, jointly operated by KEK and JAEA in Japan, aiming at an improved relative precision at a level of 10-8 in determination of the muonic magnetic moment. A major improvement of statistical uncertainty is expected with the higher muon intensity of the pulsed beam at J-PARC, while reduction of various sources of systematic uncertainties are being studied: those arising from microwave power fluctuations, magnetic field inhomogeneity, muon stopping distribution and atomic collisional shift of resonance frequencies. Experimental strategy and methods are presented in this paper, with an emphasis on our recent development of apparatuses and evaluation of systematic uncertainties.

  15. Precision Attitude Determination System (PADS) design and analysis. Two-axis gimbal star tracker

    NASA Technical Reports Server (NTRS)

    1973-01-01

    Development of the Precision Attitude Determination System (PADS) focused chiefly on the two-axis gimballed star tracker and electronics design improved from that of Precision Pointing Control System (PPCS), and application of the improved tracker for PADS at geosynchronous altitude. System design, system analysis, software design, and hardware design activities are reported. The system design encompasses the PADS configuration, system performance characteristics, component design summaries, and interface considerations. The PADS design and performance analysis includes error analysis, performance analysis via attitude determination simulation, and star tracker servo design analysis. The design of the star tracker and electronics are discussed. Sensor electronics schematics are included. A detailed characterization of the application software algorithms and computer requirements is provided.

  16. Precise orbit determination for NASA's earth observing system using GPS (Global Positioning System)

    NASA Technical Reports Server (NTRS)

    Williams, B. G.

    1988-01-01

    An application of a precision orbit determination technique for NASA's Earth Observing System (EOS) using the Global Positioning System (GPS) is described. This technique allows the geometric information from measurements of GPS carrier phase and P-code pseudo-range to be exploited while minimizing requirements for precision dynamical modeling. The method combines geometric and dynamic information to determine the spacecraft trajectory; the weight on the dynamic information is controlled by adjusting fictitious spacecraft accelerations in three dimensions which are treated as first order exponentially time correlated stochastic processes. By varying the time correlation and uncertainty of the stochastic accelerations, the technique can range from purely geometric to purely dynamic. Performance estimates for this technique as applied to the orbit geometry planned for the EOS platforms indicate that decimeter accuracies for EOS orbit position may be obtainable. The sensitivity of the predicted orbit uncertainties to model errors for station locations, nongravitational platform accelerations, and Earth gravity is also presented.

  17. Precise and direct determination of the half-life of 41Ca

    NASA Astrophysics Data System (ADS)

    Jörg, Gerhard; Amelin, Yuri; Kossert, Karsten; Lierse v. Gostomski, Christoph

    2012-07-01

    Calcium-41 plays an important role in the long-term evaluation of the safety of final repositories for nuclear waste and is used to study the fine-scale chronology of the formation of the Solar System. Both applications are hindered by insufficient precision and poor consistency of previous determinations of the half-life. This work reports a half-life for 41Ca of (9.94 ± 0.15) × 104 years, which was determined with a combination of methods, chosen to provide the best possible precision. The activity was measured by liquid scintillation counting (LSC) exploiting the triple-to-double coincidence ratio method (TDCR); the absolute isotopic composition was determined by thermal ionization mass spectrometry (TIMS) and isotope dilution. Enhanced precision and accuracy of the 41Ca half-life will allow the improvement of safety analyses for final deposit sites of nuclear waste and of dating first solids, and better constrain the stellar environment of the formation of the Solar System.

  18. Experimental study on the precise orbit determination of the BeiDou navigation satellite system.

    PubMed

    He, Lina; Ge, Maorong; Wang, Jiexian; Wickert, Jens; Schuh, Harald

    2013-01-01

    The regional service of the Chinese BeiDou satellite navigation system is now in operation with a constellation including five Geostationary Earth Orbit satellites (GEO), five Inclined Geosynchronous Orbit (IGSO) satellites and four Medium Earth Orbit (MEO) satellites. Besides the standard positioning service with positioning accuracy of about 10 m, both precise relative positioning and precise point positioning are already demonstrated. As is well known, precise orbit and clock determination is essential in enhancing precise positioning services. To improve the satellite orbits of the BeiDou regional system, we concentrate on the impact of the tracking geometry and the involvement of MEOs, and on the effect of integer ambiguity resolution as well. About seven weeks of data collected at the BeiDou Experimental Test Service (BETS) network is employed in this experimental study. Several tracking scenarios are defined, various processing schemata are designed and carried out; and then, the estimates are compared and analyzed in detail. The results show that GEO orbits, especially the along-track component, can be significantly improved by extending the tracking network in China along longitude direction, whereas IGSOs gain more improvement if the tracking network extends in latitude. The involvement of MEOs and ambiguity-fixing also make the orbits better.

  19. Precise Orbit Determination of LAGEOS satellites: results on fundamental physics and perspectives

    NASA Astrophysics Data System (ADS)

    Peron, Roberto; Lucchesi, David

    2012-07-01

    The LAGEOS satellites, launched for geodynamics and geophysics purposes, are offering also an outstanding test bench to fundamental physics. Indeed, their physical characteristics, as well as those of their orbits, and the availability of high--quality tracking data provided by the International Laser Ranging Service, allow for precise tests of gravitational theories. In this talk recent work on data analysis will be presented. A fairly large amount of LAGEOS and LAGEOS II Satellite Laser Ranging data has been analyzed with NASA/GSFC Geodyn II software, using a set of dedicated models for satellite dynamics, and the related post--fit residuals have been analyzed. In particular, general relativistic effects leave peculiar imprint on nodal longitude, argument of perigee and inclination behaviour, which have been used to obtain precise estimates of the related parameters. The most precise --- as today --- estimate of the effects on argument of perigee has been obtained, providing a direct measurement of the relativistic ``Schwarzschild'' precession in the field of the Earth. At the same time the constraints on a non--Newtonian (i.e. Yukawa--type) gravitational dynamics have been improved. The measurement error budget will be discussed, emphasizing the role of gravitational and, especially, of non--gravitational forces modeling on the overall precise orbit determination quality, as well as on future new measurements and constraints of the gravitational interaction.

  20. Blackbody Infrared Radiative Dissociation of Protonated Oligosaccharides

    NASA Astrophysics Data System (ADS)

    Fentabil, Messele A.; Daneshfar, Rambod; Kitova, Elena N.; Klassen, John S.

    2011-12-01

    The dissociation pathways, kinetics, and energetics of protonated oligosaccharides in the gas phase were investigated using blackbody infrared radiative dissociation (BIRD). Time-resolved BIRD measurements were performed on singly protonated ions of cellohexaose (Cel6), which is composed of β-(1 → 4)-linked glucopyranose rings, and five malto-oligosaccharides (Malx, where x = 4-8), which are composed of α-(1 → 4)-linked glucopyranose units. At the temperatures investigated (85-160 °C), the oligosaccharides dissociate at the glycosidic linkages or by the loss of a water molecule to produce B- or Y-type ions. The Y ions dissociate to smaller Y or B ions, while the B ions yield exclusively smaller B ions. The sequential loss of water molecules from the smallest B ions (B1 and B2) also occurs. Rate constants for dissociation of the protonated oligosaccharides and the corresponding Arrhenius activation parameters (Ea and A) were determined. The Ea and A-factors measured for protonated Malx (x > 4) are indistinguishable within error (~19 kcal mol-1, 1010 s-1), which is consistent with the ions being in the rapid energy exchange limit. In contrast, the Arrhenius parameters for protonated Cel6 (24 kcal mol-1, 1012 s-1) are significantly larger. These results indicate that both the energy and entropy changes associated with the glycosidic bond cleavage are sensitive to the anomeric configuration. Based on the results of this study, it is proposed that formation of B and Y ions occurs through a common dissociation mechanism, with the position of the proton establishing whether a B or Y ion is formed upon glycosidic bond cleavage.

  1. Cashew juice containing prebiotic oligosaccharides.

    PubMed

    da Silva, Isabel Moreira; Rabelo, Maria Cristiane; Rodrigues, Sueli

    2014-09-01

    The enzyme dextransucrase in a medium containing sucrose and an acceptor as substrate synthesizes prebiotics oligosaccharides. The cashew apple juice works as a source of acceptors because it is rich in glucose and fructose (enzyme acceptors). The use of cashew apple juice becomes interesting because it aims at harnessing the peduncle of the cashew that is wasted during the nut processing, which is the product of greater economic expression. The production of dextransucrase enzyme was done by fermentative process by inoculating the bacterium Leuconostoc mesenteroides NRRL B512F into a culture medium containing sucrose as the only carbon source. Thus, the aim of this work was the production of prebiotic oligosaccharides by enzymatic process with addition of the dextransucrase enzyme to the clarified cashew apple juice. Dextran yield was favored by the combination of low concentrations of sucrose and reducing sugars. The formation of oligosaccharides was favored by increasing the concentration of reducing sugars and by the combination of high concentrations of sucrose and reducing sugars, the highest concentration of oligosaccharides obtained was 104.73 g/L and the qualitative analysis showed that at concentrations of 25 g/L and 75 g/L of sucrose and reducing sugar, respectively, it is possible to obtain oligosaccharides of degree of polymerization up to 12. The juice containing prebiotic oligosaccharide is a potential new functional beverage.

  2. Cashew juice containing prebiotic oligosaccharides.

    PubMed

    da Silva, Isabel Moreira; Rabelo, Maria Cristiane; Rodrigues, Sueli

    2014-09-01

    The enzyme dextransucrase in a medium containing sucrose and an acceptor as substrate synthesizes prebiotics oligosaccharides. The cashew apple juice works as a source of acceptors because it is rich in glucose and fructose (enzyme acceptors). The use of cashew apple juice becomes interesting because it aims at harnessing the peduncle of the cashew that is wasted during the nut processing, which is the product of greater economic expression. The production of dextransucrase enzyme was done by fermentative process by inoculating the bacterium Leuconostoc mesenteroides NRRL B512F into a culture medium containing sucrose as the only carbon source. Thus, the aim of this work was the production of prebiotic oligosaccharides by enzymatic process with addition of the dextransucrase enzyme to the clarified cashew apple juice. Dextran yield was favored by the combination of low concentrations of sucrose and reducing sugars. The formation of oligosaccharides was favored by increasing the concentration of reducing sugars and by the combination of high concentrations of sucrose and reducing sugars, the highest concentration of oligosaccharides obtained was 104.73 g/L and the qualitative analysis showed that at concentrations of 25 g/L and 75 g/L of sucrose and reducing sugar, respectively, it is possible to obtain oligosaccharides of degree of polymerization up to 12. The juice containing prebiotic oligosaccharide is a potential new functional beverage. PMID:25190866

  3. Improvement of measurement precision of SPME-GC/MS determination of tributyltin using isotope dilution calibration.

    PubMed

    Bancon-Montigny, Chrystelle; Maxwell, Paulette; Yang, Lu; Mester, Zoltán; Sturgeon, Ralph E

    2002-11-01

    A unique approach was developed to improve the precision of quantification of tributyltin (TBT) in sedimentsby solid phase microextraction (SPME) using isotope dilution GC/MS. The precision of the analytical technique was initially evaluated using standard calibration solutions. In selective ion monitoring (SIM) mode, the relative standard deviation (RSD) obtained for TBT based on peak area response was 18% (n = 11). When an internal standard, tripropyltin (TPrT), was used, the RSD decreased to 12%. A significant improvement in the precision using SPME was noted when a 117Sn-enriched TBT spike was employed; the RSD decreased 4-fold to 3%. Detection limits of 0.2 and 20 ng(Sn) L(-1) were achieved with SPME sampling and liquid-liquid extraction, respectively. Six analyses were performed for determination of TBT in PACS-2 sediment Certified Reference Material using both standard additions and isotope dilution procedures. For the latter, a 117Sn-enriched TBT spike was used. A concentration of 0.88 +/- 0.03 microg g(-1) (RSD 3.4%) obtained using standard additions was in good agreement with the certified value of 0.98 +/- 0.13 microg g(-1) as tin. Concentrations found using isotope dilution were 0.895 +/- 0.015 microg g(-1) (RSD 1.73%) as tin and 0.874 +/- 0.014 microg g(-1) (RSD 1.66%) as tin using a liquid-liquid extraction and SPME sampling, respectively. A 2-fold improvement in the precision of TBT concentration measurement using isotope dilution was clearly achieved, demonstrating its superiority in providing more accurate and precise results as compared to the method of standard additions. The isotope dilution technique eliminated the problem of poor reproducibility, which typically plagues SPME. PMID:12433095

  4. GNSS orbit determination by precise modeling of non-gravitational forces acting on satellite's body

    NASA Astrophysics Data System (ADS)

    Wielgosz, Agata; Kalarus, Maciej; Liwosz, Tomasz

    2016-04-01

    Satellites orbiting around Earth are affected by gravitational forces and non-gravitational perturbations (NGP). While the perturbations caused by gravitational forces, which are due to central body gravity (including high-precision geopotential field) and its changes (due to secular variations and tides), solar bodies attraction and relativistic effects are well-modeled, the perturbations caused by the non-gravitational forces are the most limiting factor in Precise Orbit Determination (POD). In this work we focused on very precise non-gravitational force modeling for medium Earth orbit satellites by applying the various models of solar radiation pressure including changes in solar irradiance and Earth/Moon shadow transition, Earth albedo and thermal radiation. For computing influence of aforementioned forces on spacecraft the analytical box-wing satellite model was applied. Smaller effects like antenna thrust or spacecraft thermal radiation were also included. In the process of orbit determination we compared the orbit with analytically computed NGP with the standard procedure in which CODE model is fitted for NGP recovery. We considered satellites from several systems and on different orbits and for different periods: when the satellite is all the time in full sunlight and when transits the umbra and penumbra regions.

  5. The Tromsø study: determinants of precision in bone densitometry.

    PubMed

    Rosvold Berntsen, G K; Fønnebø, V; Tollan, A; Søgaard, A J; Joakimsen, R M; Magnus, J H

    2000-11-01

    Studies of precision determinants in bone densitometry are scarce. A total of 111 subjects recruited from the population-based multipurpose Tromsø Study (Norway), 27-75 years of age, had repeated forearm bone single X-ray absorptiometry (SXA) measurements. Measurement conditions were systematically varied in series up to eight scans. Median coefficients of variation (CV) for two scans performed 1 week apart, by two different operators were 0.79% and 0.98% at distal and ultradistal sites, respectively. The CV distribution was skewed: 5% of the subjects had individual CVs above 2.2% (distal) and 3.4% (ultradistal). Age (P = 0.0097) and repositioning were important determinants of precision. The SXA bone mineral density (BMD)-measurement method is sufficiently precise to establish BMD level. The minimal individual percentage BMD change that can be detected with 95% certainty was 2% and 3% at distal and ultradistal sites, respectively. Detection of BMD changes less than this should rely on multiple repeat measurements at each point in time.

  6. Precise orbit determination of the Lunar Reconnaissance Orbiter and first gravity field results

    NASA Astrophysics Data System (ADS)

    Maier, Andrea; Baur, Oliver

    2014-05-01

    The Lunar Reconnaissance Orbiter (LRO) was launched in 2009 and is expected to orbit the Moon until the end of 2014. Among other instruments, LRO has a highly precise altimeter on board demanding an orbit accuracy of one meter in the radial component. Precise orbit determination (POD) is achieved with radiometric observations (Doppler range rates, ranges) on the one hand, and optical laser ranges on the other hand. LRO is the first satellite at a distance of approximately 360 000 to 400 000 km from the Earth that is routinely tracked with optical laser ranges. This measurement type was introduced to achieve orbits of higher precision than it would be possible with radiometric observations only. In this contribution we investigate the strength of each measurement type (radiometric range rates, radiometric ranges, optical laser ranges) based on single-technique orbit estimation. In a next step all measurement types are combined in a joined analysis. In addition to POD results, preliminary gravity field coefficients are presented being a subsequent product of the orbit determination process. POD and gravity field estimation was accomplished with the NASA/GSFC software packages GEODYN and SOLVE.

  7. Determination of the half-life of 213Fr with high precision

    NASA Astrophysics Data System (ADS)

    Fisichella, M.; Musumarra, A.; Farinon, F.; Nociforo, C.; Del Zoppo, A.; Figuera, P.; La Cognata, M.; Pellegriti, M. G.; Scuderi, V.; Torresi, D.; Strano, E.

    2013-07-01

    High-precision measurement of half-life and Qα value of neutral and highly charged α emitters is a major subject of investigation currently. In this framework, we recently pushed half-life measurements of neutral emitters to a precision of a few per mil. This result was achieved by using different techniques and apparatuses at Istituto Nazionale di Fisica Nucleare Laboratori Nazionali del Sud (INFN-LNS) and GSI Darmstadt. Here we report on 213Fr half-life determination [T1/2(213Fr) = 34.14±0.06 s] at INFN-LNS, detailing the measurement protocol used. Direct comparison with the accepted value in the literature shows a discrepancy of more than three sigma. We propose this new value as a reference, discussing previous experiments.

  8. Precise determination of the 113Cd fourth-forbidden non-unique β -decay Q value

    NASA Astrophysics Data System (ADS)

    Gamage, N. D.; Bollen, G.; Eibach, M.; Gulyuz, K.; Izzo, C.; Kandegedara, R. M. E. B.; Redshaw, M.; Ringle, R.; Sandler, R.; Valverde, A. A.

    2016-08-01

    Using Penning trap mass spectrometry, we have performed a precise determination of the Q value for the highly forbidden β decay of 113Cd. An independent measurement of the Q value fixes the end-point energy in a fit to the 113Cdβ -decay spectrum. This provides a strong test of systematics for detectors that have observed this decay, such as those developed for β β -decay searches in cadmium and other isotopes. It will also aid in the theoretical description of the β -decay spectrum. The result, Qβ=323.89 (27 ) keV , agrees at the 1.3 σ level with the value obtained from the 2012 Atomic Mass Evaluation [Chin. Phys. C 36, 1603 (2012), 10.1088/1674-1137/36/12/003], but is a factor of almost four more precise. We also report improved values for the atomic masses of 113Cd,113In, and 112Cd.

  9. High-precision determination of iron oxidation state in silicate glasses using XANES

    SciTech Connect

    Cottrell, Elizabeth; Kelley, Katherine A.; Lanzirotti, Antonio; Fischer, Rebecca A.

    2009-11-04

    Fe K-edge X-ray absorption near-edge structure (XANES) and Moessbauer spectra were collected on natural basaltic glasses equilibrated over a range of oxygen fugacity (QFM - 3.5 to QFM + 4.5). The basalt compositions and fO{sub 2} conditions were chosen to bracket the natural range of redox conditions expected for basalts from mid-ocean ridge, ocean island, back-arc basin, and arc settings, in order to develop a high-precision calibration for the determination of Fe{sup 3+}/{Sigma}Fe in natural basalts. The pre-edge centroid energy, corresponding to the 1s {yields} 3d transition, was determined to be the most robust proxy for Fe oxidation state, affording significant advantages compared to the use of other spectral features. A second-order polynomial models the correlation between the centroid and Fe{sup 3+}/{Sigma}Fe, yielding a precision of {+-} 0.0045 in Fe{sup 3+}/{Sigma}Fe for glasses with Fe{sup 3+}/{Sigma}Fe > 8%, which is comparable to the precision of wet chemistry. This high precision relies on a Si (311) monochromator to better define the Fe{sup 2+} and Fe{sup 3+} transitions, accurate and robust modeling of the pre-edge feature, dense fO{sub 2}-coverage and compositional appropriateness of reference glasses, and application of a non-linear drift correction. Through re-analysis of the reference glasses across three synchrotron beam sessions, we show that the quoted precision can be achieved (i.e., analyses are reproducible) across multiple synchrotron beam sessions, even when spectral collection conditions (detector parameters or sample geometry) change. Rhyolitic glasses were also analyzed and yield a higher centroid energy at a given Fe{sup 3+}/{Sigma}Fe than basalts, implying that major variations in melt structure affect the relationship between centroid position and Fe{sup 3+}/{Sigma}Fe, and that separate calibrations are needed for the determination of oxidation state in basalts and rhyolites.

  10. Precise determination of stable chlorine isotopic ratios in low-concentration natural samples

    NASA Astrophysics Data System (ADS)

    Magenheim, A. J.; Spivack, A. J.; Volpe, C.; Ransom, B.

    1994-07-01

    Investigation of stable chlorine isotopes in geological materials has been hindered by large sample requirements and/or lack of analytical precision. Here we describe precise methods for the extraction, isolation, and isotopic analysis of low levels of chlorine in both silicate and aerosol samples. Our standard procedure uses 2 μg of Cl for each isotopic analysis. External reproducibility (1 σ) is 0.25%. for the 37Cl /35Cl measurements. Chlorine is extracted from silicate samples (typically containing at least 20 μg of Cl) via pyrohydrolysis using induction heating and water vapor as the carrier, and the volatilized chlorine is condensed in aqueous solution. Atmospheric aerosols collected on filters are simply dissolved in water. Prior to isotopic measurement, removal of high levels of SO 42-, F -, and organic compounds is necessary for the production of stable ion beams. Sulfate is removed by BaSCO 4 precipitation, F - by CaF 2 precipitation, and organic compounds are extracted with activated carbon. Chlorine is converted to stoichiometric CsCl by cation exchange, and isotopic ratios are determined by thermal ionization mass spectrometry of Cs 2Cl +. We demonstrate that the sensitivity and precision of this method allow resolution of natural variations in chlorine isotopic composition, and thereby provide insight to some fundamental aspects of chlorine geochemistry.

  11. A demonstration of high precision GPS orbit determination for geodetic applications

    NASA Technical Reports Server (NTRS)

    Lichten, S. M.; Border, J. S.

    1987-01-01

    High precision orbit determination of Global Positioning System (GPS) satellites is a key requirement for GPS-based precise geodetic measurements and precise low-earth orbiter tracking, currently under study at JPL. Different strategies for orbit determination have been explored at JPL with data from a 1985 GPS field experiment. The most successful strategy uses multi-day arcs for orbit determination and includes fine tuning of spacecraft solar pressure coefficients and station zenith tropospheric delays using the GPS data. Average rms orbit repeatability values for 5 of the GPS satellites are 1.0, 1.2, and 1.7 m in altitude, cross-track, and down-track componenets when two independent 5-day fits are compared. Orbit predictions up to 24 hours outside the multi-day arcs agree within 4 m of independent solutions obtained with well tracked satellites in the prediction interval. Baseline repeatability improves with multi-day as compared to single-day arc orbit solutions. When tropospheric delay fluctuations are modeled with process noise, significant additional improvement in baseline repeatability is achieved. For a 246-km baseline, with 6-day arc solutions for GPS orbits, baseline repeatability is 2 parts in 100 million (0.4-0.6 cm) for east, north, and length components and 8 parts in 100 million for the vertical component. For 1314 and 1509 km baselines with the same orbits, baseline repeatability is 2 parts in 100 million for the north components (2-3 cm) and 4 parts in 100 million or better for east, length, and vertical components.

  12. Precise phase determination with the built-in spectral interferometry in two-dimensional electronic spectroscopy.

    PubMed

    Zhang, Yizhu; Yan, T-M; Jiang, Y H

    2016-09-01

    A new method determining the precise phase of pulse sequences in two-dimensional electronic spectroscopy (2DES) is proposed merely using the already built-in spectral interferometry. The approach is easily implemented without the supplementary instrumental construction, only at the expense of a few additional scanning and data-fitting processes. This method is executed with the sample in place, effectively avoiding the phase ambiguities of the beam propagation in samples, thus calibrating the absolute phase at the exact interaction region. The new proposed method is expected to improve the phasing procedure in 2DES in a more convenient way. PMID:27607991

  13. Improved treatment of global positioning system force parameters in precise orbit determination applications

    NASA Technical Reports Server (NTRS)

    Vigue, Y.; Lichten, S. M.; Muellerschoen, R. J.; Blewitt, G.; Heflin, M. B.

    1993-01-01

    Data collected from a worldwide 1992 experiment were processed at JPL to determine precise orbits for the satellites of the Global Positioning System (GPS). A filtering technique was tested to improve modeling of solar-radiation pressure force parameters for GPS satellites. The new approach improves orbit quality for eclipsing satellites by a factor of two, with typical results in the 25- to 50-cm range. The resultant GPS-based estimates for geocentric coordinates of the tracking sites, which include the three DSN sites, are accurate to 2 to 8 cm, roughly equivalent to 3 to 10 nrad of angular measure.

  14. A Precise Position and Attitude Determination System for Lightweight Unmanned Aerial Vehicles

    NASA Astrophysics Data System (ADS)

    Eling, C.; Klingbeil, L.; Wieland, M.; Kuhlmann, H.

    2013-08-01

    In many unmanned aerial vehicle (UAV) applications a direct georeferencing is required. The reason can be that the UAV flies autonomous and must be navigated precisely, or that the UAV performs a remote sensing operation, where the position of the camera has to be known at the moment of the recording. In our application, a project called Mapping on Demand, we are motivated by both of these reasons. The goal of this project is to develop a lightweight autonomously flying UAV that is able to identify and measure inaccessible three-dimensional objects by use of visual information. Due to payload and space limitations, precise position and attitude determination of micro- and mini-sized UAVs is very challenging. The limitations do not only affect the onboard computing capacity, but they are also noticeable when choosing the georeferencing sensors. In this article, we will present a new developed onboard direct georeferencing system which is real-time capable, applicable for lightweight UAVs and provides very precise results (position accuracy σ < 5 cm and attitude accuracy σ < 0.5 deg). In this system GPS, inertial sensors, magnetic field sensors, a barometer as well as stereo video cameras are used as georeferencing sensors. We will describe the hardware development and will go into details of the implemented software. In this context especially the RTK-GPS software and the concept of the attitude determination by use of inertial sensors, magnetic field sensors as well as an onboard GPS baseline will be highlighted. Finally, results of first field tests as well as an outlook on further developments will conclude this contribution.

  15. DPOD2005 : Realization of a DORIS terrestrial reference frame for precise orbit determination

    NASA Astrophysics Data System (ADS)

    Willis, Pascal; Ries, John C.; Soudarin, Laurent; Zelensky, Nikita; Pavlis, Erricos C.

    Scientific studies related to altimetry data (mean sea level determination and its time evolution) require centimeter-level orbit determination in the radial component of the satellite. Change in station coordinates and velocities affect the orbit determination and the derived oceanographic results. Following the release of the ITRF2005, we conducted an extensive study related to the DORIS tracking network. For all ground beacons, we verified if the ITRF2005 position and velocity can be extrapolated in time without significant loss of precision. We tried to identified discontinuities in the DORIS coordinates time series, either caused by physical reason, such as Earthquakes, or by instrumental causes. We also identified time periods for which data for a specific station should not be used for orbit determination. In particular, specific stations such as Socorro Island, on which horizontal and vertical movements are detected from the DORIS results will be presented and can be explained by a volcano deformation. Finally, a more complex example will be provided for the Arequipa station, where a major Earthquake happened on June 23, 2001 and for which some relaxation effects are noticeable in the velocity determination even 2 years after the station displacement. A complete set of positions and velocities (by intervals) is given (DPOD2005) and will be used for Jason and TOPEX orbit determination.

  16. The GPS Topex/Poseidon precise orbit determination experiment - Implications for design of GPS global networks

    NASA Technical Reports Server (NTRS)

    Lindqwister, Ulf J.; Lichten, Stephen M.; Davis, Edgar S.; Theiss, Harold L.

    1993-01-01

    Topex/Poseidon, a cooperative satellite mission between United States and France, aims to determine global ocean circulation patterns and to study their influence on world climate through precise measurements of sea surface height above the geoid with an on-board altimeter. To achieve the mission science aims, a goal of 13-cm orbit altitude accuracy was set. Topex/Poseidon includes a Global Positioning System (GPS) precise orbit determination (POD) system that has now demonstrated altitude accuracy better than 5 cm. The GPS POD system includes an on-board GPS receiver and a 6-station GPS global tracking network. This paper reviews early GPS results and discusses multi-mission capabilities available from a future enhanced global GPS network, which would provide ground-based geodetic and atmospheric calibrations needed for NASA deep space missions while also supplying tracking data for future low Earth orbiters. Benefits of the enhanced global GPS network include lower operations costs for deep space tracking and many scientific and societal benefits from the low Earth orbiter missions, including improved understanding of ocean circulation, ocean-weather interactions, the El Nino effect, the Earth thermal balance, and weather forecasting.

  17. Mechanisms underlying immune effects of dietary oligosaccharides.

    PubMed

    Jeurink, Prescilla V; van Esch, Betty C A M; Rijnierse, Anneke; Garssen, Johan; Knippels, Léon M J

    2013-08-01

    The WHO refers to human milk as the nutritional gold standard for term infants. Human milk contains many immunomodulatory compounds, including oligosaccharides. Human-milk oligosaccharides can serve as prebiotics because the nondigestible oligosaccharides present in human milk show a clear bifidogenic effect on the gut microbiota. Dietary oligosaccharide structures that have prebiotic effects similar to human-milk oligosaccharides include galacto-oligosaccharides, fructo-oligosaccharides, and pectin-derived acidic oligosaccharides. Both animal studies and human clinical trials showed that dietary intervention with these dietary oligosaccharides in early life could lead to the prevention of atopic dermatitis, food allergy, and allergic asthma. The immune-modulating effects of these oligosaccharides are likely assisted via alteration of the intestinal microbiota or in a microbiota-independent manner by direct interaction on immune cells or both. In this review, an overview of the prebiotic role of dietary oligosaccharides on the microbiota and the microbiota-independent immune modulation by these prebiotics is provided. In addition, recent publications that report on the pathways by which the oligosaccharides might exert their direct immunomodulatory effect are summarized.

  18. Inulin Potential for Enzymatic Obtaining of Prebiotic Oligosaccharides.

    PubMed

    Flores, Adriana C; Morlett, Jesús A; Rodríguez, Raúl

    2016-08-17

    Oligosaccharides have been marketed since the 80s as low-calorie agents and recently have gained interest in the pharmaceutical and food industry as functional sweeteners and prebiotic enriching population of Bifidobacteria. Currently, they have an approximated value of $200 per kg and recently, inulin has been proposed as a feedstock for production of oligosaccharides through selective hydrolysis by action of endoinulinase. High optimum temperature (60°C) and thermostability are two important criteria that determine suitability of this enzyme for industrial applications as well as enzyme cost, a major limiting factor. Significant reduction in cost can be achieved by employing low-value and abundant inulin-rich plants as Jerusalem artichoke, dahlia, yacon, garlic, and onion, among others. In general, the early harvested tubers of these plants contain a greater amount of highly polymerized sugar fractions, which offer more industrial value than late-harvested tubers or those after storage. Also, development of recombinant microorganisms could be useful to reduce the cost of enzyme technology for large-scale production of oligosaccharides. In the case of fungal inulinases, several studies of cloning and modification have been made to achieve greater efficiency. The present paper reviews inulin from vegetable sources as feedstock for oligosaccharides production through the action of inulinases, the impact of polymerization degree of inulin and its availability, and some strategies to increase oligosaccharide production.

  19. Inulin Potential for Enzymatic Obtaining of Prebiotic Oligosaccharides.

    PubMed

    Flores, Adriana C; Morlett, Jesús A; Rodríguez, Raúl

    2016-08-17

    Oligosaccharides have been marketed since the 80s as low-calorie agents and recently have gained interest in the pharmaceutical and food industry as functional sweeteners and prebiotic enriching population of Bifidobacteria. Currently, they have an approximated value of $200 per kg and recently, inulin has been proposed as a feedstock for production of oligosaccharides through selective hydrolysis by action of endoinulinase. High optimum temperature (60°C) and thermostability are two important criteria that determine suitability of this enzyme for industrial applications as well as enzyme cost, a major limiting factor. Significant reduction in cost can be achieved by employing low-value and abundant inulin-rich plants as Jerusalem artichoke, dahlia, yacon, garlic, and onion, among others. In general, the early harvested tubers of these plants contain a greater amount of highly polymerized sugar fractions, which offer more industrial value than late-harvested tubers or those after storage. Also, development of recombinant microorganisms could be useful to reduce the cost of enzyme technology for large-scale production of oligosaccharides. In the case of fungal inulinases, several studies of cloning and modification have been made to achieve greater efficiency. The present paper reviews inulin from vegetable sources as feedstock for oligosaccharides production through the action of inulinases, the impact of polymerization degree of inulin and its availability, and some strategies to increase oligosaccharide production. PMID:25746219

  20. Robust Flight Path Determination for Mars Precision Landing Using Genetic Algorithms

    NASA Technical Reports Server (NTRS)

    Bayard, David S.; Kohen, Hamid

    1997-01-01

    This paper documents the application of genetic algorithms (GAs) to the problem of robust flight path determination for Mars precision landing. The robust flight path problem is defined here as the determination of the flight path which delivers a low-lift open-loop controlled vehicle to its desired final landing location while minimizing the effect of perturbations due to uncertainty in the atmospheric model and entry conditions. The genetic algorithm was capable of finding solutions which reduced the landing error from 111 km RMS radial (open-loop optimal) to 43 km RMS radial (optimized with respect to perturbations) using 200 hours of computation on an Ultra-SPARC workstation. Further reduction in the landing error is possible by going to closed-loop control which can utilize the GA optimized paths as nominal trajectories for linearization.

  1. A proposed experimental method for interpreting Doppler effect measurements and determining their precision

    NASA Technical Reports Server (NTRS)

    Klann, P. G.

    1973-01-01

    The principal problem in the measurement of the Doppler reactivity effect is separating it from the thermal reactivity effects of the expansion of the heated sample. It is shown in this proposal that the thermal effects of sample expansion can be experimentally determined by making additional measurements with porous samples having the same mass and/or volume as the primary sample. By combining these results with independent measurements of the linear temperature coefficient and the computed temperature dependence of the Doppler coefficient the magnitude of the Doppler coefficient may be extracted from the data. These addiational measurements are also useful to experimentally determine the precision of the reactivity oscillator technique used to measure the reactivity effects of the heated sample.

  2. The rapid and precise determination of the optical thickness of thin coatings in a vacuum.

    PubMed

    van Heel, A C; van Vonno, W

    1967-05-01

    The classical interference experiment with a double slit is adapted for measuring the optical thickness (n - 1)d of transparent and slightly absorbing thin films on transparent or reflecting substrates and for measuring the geometrical thickness d of metal films on reflecting substrates. Also, a method is described for measuring in vacuum the optical thickness of transparent or slightly absorbing thin films on transparent substrates. Results are given of measurements on magnesium fluoride, silicon monoxide, and zinc sulfide films. The influence of admitting air into the vacuum chamber has been investigated. With the available arrangements, a precision of lambda/1000 in the determination of the optical or geometrical thickness is easily obtainable for all film thicknesses. A thickness determination can he completed in about 1 min.

  3. A numerical method for determining highly precise electron energy distribution functions from Langmuir probe characteristics

    SciTech Connect

    Bang, Jin-Young; Chung, Chin-Wook

    2010-12-15

    Electron energy distribution functions (EEDFs) were determined from probe characteristics using a numerical ac superimposed method with a distortion correction of high derivative terms by varying amplitude of a sinusoidal perturbation voltage superimposed onto the dc sweep voltage, depending on the related electron energy. Low amplitude perturbation applied around the plasma potential represented the low energy peak of the EEDF exactly, and high amplitude perturbation applied around the floating potential was effective to suppress noise or distortion of the probe characteristic, which is fatal to the tail electron distribution. When a small random noise was imposed over the stabilized prove characteristic, the numerical differentiation method was not suitable to determine the EEDF, while the numerical ac superimposed method was able to obtain a highly precise EEDF.

  4. Phase center modeling for LEO GPS receiver antennas and its impact on precise orbit determination

    NASA Astrophysics Data System (ADS)

    Jäggi, Adrian; Dach, R.; Montenbruck, O.; Hugentobler, U.; Bock, H.; Beutler, G.

    2009-12-01

    Most satellites in a low-Earth orbit (LEO) with demanding requirements on precise orbit determination (POD) are equipped with on-board receivers to collect the observations from Global Navigation Satellite systems (GNSS), such as the Global Positioning System (GPS). Limiting factors for LEO POD are nowadays mainly encountered with the modeling of the carrier phase observations, where a precise knowledge of the phase center location of the GNSS antennas is a prerequisite for high-precision orbit analyses. Since 5 November 2006 (GPS week 1400), absolute instead of relative values for the phase center location of GNSS receiver and transmitter antennas are adopted in the processing standards of the International GNSS Service (IGS). The absolute phase center modeling is based on robot calibrations for a number of terrestrial receiver antennas, whereas compatible antenna models were subsequently derived for the remaining terrestrial receiver antennas by conversion (from relative corrections), and for the GNSS transmitter antennas by estimation. However, consistent receiver antenna models for space missions such as GRACE and TerraSAR-X, which are equipped with non-geodetic receiver antennas, are only available since a short time from robot calibrations. We use GPS data of the aforementioned LEOs of the year 2007 together with the absolute antenna modeling to assess the presently achieved accuracy from state-of-the-art reduced-dynamic LEO POD strategies for absolute and relative navigation. Near-field multipath and cross-talk with active GPS occultation antennas turn out to be important and significant sources for systematic carrier phase measurement errors that are encountered in the actual spacecraft environments. We assess different methodologies for the in-flight determination of empirical phase pattern corrections for LEO receiver antennas and discuss their impact on POD. By means of independent K-band measurements, we show that zero-difference GRACE orbits can be

  5. Precise orbit determination of Multi-GNSS constellation including GPS GLONASS BDS and GALIEO

    NASA Astrophysics Data System (ADS)

    Dai, Xiaolei

    2014-05-01

    In addition to the existing American global positioning system (GPS) and the Russian global navigation satellite system (GLONASS), the new generation of GNSS is emerging and developing, such as the Chinese BeiDou satellite navigation system (BDS) and the European GALILEO system. Multi-constellation is expected to contribute to more accurate and reliable positioning and navigation service. However, the application of multi-constellation challenges the traditional precise orbit determination (POD) strategy that was designed usually for single constellation. In this contribution, we exploit a more rigorous multi-constellation POD strategy for the ongoing IGS multi-GNSS experiment (MGEX) where the common parameters are identical for each system, and the frequency- and system-specified parameters are employed to account for the inter-frequency and inter-system biases. Since the authorized BDS attitude model is not yet released, different BDS attitude model are implemented and their impact on orbit accuracy are studied. The proposed POD strategy was implemented in the PANDA (Position and Navigation Data Analyst) software and can process observations from GPS, GLONASS, BDS and GALILEO together. The strategy is evaluated with the multi-constellation observations from about 90 MGEX stations and BDS observations from the BeiDou experimental tracking network (BETN) of Wuhan University (WHU). Of all the MGEX stations, 28 stations record BDS observation, and about 80 stations record GALILEO observations. All these data were processed together in our software, resulting in the multi-constellation POD solutions. We assessed the orbit accuracy for GPS and GLONASS by comparing our solutions with the IGS final orbit, and for BDS and GALILEO by overlapping our daily orbit solution. The stability of inter-frequency bias of GLONASS and inter-system biases w.r.t. GPS for GLONASS, BDS and GALILEO were investigated. At last, we carried out precise point positioning (PPP) using the multi

  6. Precision Orbit Determination for the Lunar Reconnaissance Orbiter: orbit quality and gravity field estimation

    NASA Astrophysics Data System (ADS)

    Mazarico, E.; Rowlands, D. D.; Neumann, G. A.; Lemoine, F. G.; Torrence, M. H.; Smith, D. E.; Zuber, M. T.; Mao, D.

    2010-12-01

    We present results of the Precision Orbit Determination work undertaken by the Lunar Orbiter Laser Altimeter (LOLA) Science Team for the Lunar Reconnaissance Orbiter (LRO) mission, in order to meet the position knowledge accuracy requirements (50-m total position) and to precisely geolocate the LRO datasets. In addition to the radiometric tracking data, one-way laser ranges (LR) between Earth stations and the spacecraft are made possible by a small telescope mounted on the spacecraft high-gain antenna. The photons received from Earth are transmitted to one LOLA detector by a fiber optics bundle. The LOLA timing system enables 5-s LR normal points with precision better than 10cm. Other types of geodetic constraints are derived from the altimetric data itself. The orbit geometry can be constrained at the times of laser groundtrack intersections (crossovers). Due to the Moon's slow rotation, orbit solutions and normal equations including altimeter crossovers are processed and created in one month batches. Recent high-resolution topographic maps near the lunar poles are used to produce a new kind of geodetic constraints. Purely geometric, those do not necessitate actual groundtrack intersections. We assess the contributions of those data types, and the quality of our orbits. Solutions which use altimetric crossover meet the horizontal 50-m requirement, and perform usually better (10-20m). We also obtain gravity field solutions based on LRO and historical data. The various LRO data are accumulated into normal equations, separately for each one month batch and for each measurement type, which enables the final weights to be adjusted during the least-squares inversion step. Expansion coefficients to degree and order 150 are estimated, and a Kaula rule is still needed to stabilize the farside field. The gravity field solutions are compared to previous solutions (GLGM-3, LP150Q, SGM100h) and the geopotential predicted from the latest LOLA spherical harmonic expansion.

  7. Ion channel stochasticity may be critical in determining the reliability and precision of spike timing.

    PubMed

    Schneidman, E; Freedman, B; Segev, I

    1998-10-01

    The firing reliability and precision of an isopotential membrane patch consisting of a realistically large number of ion channels is investigated using a stochastic Hodgkin-Huxley (HH) model. In sharp contrast to the deterministic HH model, the biophysically inspired stochastic model reproduces qualitatively the different reliability and precision characteristics of spike firing in response to DC and fluctuating current input in neocortical neurons, as reported by Mainen & Sejnowski (1995). For DC inputs, spike timing is highly unreliable; the reliability and precision are significantly increased for fluctuating current input. This behavior is critically determined by the relatively small number of excitable channels that are opened near threshold for spike firing rather than by the total number of channels that exist in the membrane patch. Channel fluctuations, together with the inherent bistability in the HH equations, give rise to three additional experimentally observed phenomena: subthreshold oscillations in the membrane voltage for DC input, "spontaneous" spikes for subthreshold inputs, and "missing" spikes for suprathreshold inputs. We suggest that the noise inherent in the operation of ion channels enables neurons to act as "smart" encoders. Slowly varying, uncorrelated inputs are coded with low reliability and accuracy and, hence, the information about such inputs is encoded almost exclusively by the spike rate. On the other hand, correlated presynaptic activity produces sharp fluctuations in the input to the postsynaptic cell, which are then encoded with high reliability and accuracy. In this case, information about the input exists in the exact timing of the spikes. We conclude that channel stochasticity should be considered in realistic models of neurons.

  8. Spectrophotometric high-precision seawater pH determination for use in underway measuring systems

    NASA Astrophysics Data System (ADS)

    Aßmann, S.; Frank, C.; Körtzinger, A.

    2011-10-01

    Autonomous sensors are required for a comprehensive documentation of the changes in the marine carbon system and thus to differentiate between its natural variability and anthropogenic impacts. Spectrophotometric determination of pH - a key variable of the seawater carbon system - is particularly suited to achieve precise and drift-free measurements. However, available spectrophotometric instruments are not suitable for integration into automated measurement systems (e.g. FerryBox) since they do not meet the major requirements of reliability, stability, robustness and moderate cost. Here we report on the development and testing of a~new indicator-based pH sensor that meets all of these requirements. This sensor can withstand the rough conditions during long-term deployments on ships of opportunity and is applicable to the open ocean as well as to coastal waters with a complex matrix and highly variable conditions. The sensor uses a high resolution CCD spectrometer as detector connected via optical fibers to a custom-made cuvette designed to reduce the impact of air bubbles. The sample temperature can be precisely adjusted (25 °C ± 0.006 °C) using computer-controlled power supplies and Peltier elements thus avoiding the widely used water bath. The overall setup achieves a measurement frequency of 1 min-1 with a precision of ±0.0007 pH units, an average offset of +0.0005 pH units to a reference system, and an offset of +0.0081 pH units to a certified standard buffer. Application of this sensor allows monitoring of seawater pH in autonomous underway systems, providing a key variable for characterization and understanding of the marine carbon system.

  9. Determining neutrino mass hierarchy by precision measurements in electron and muon neutrino disappearance experiments

    SciTech Connect

    Minakata, H.; Nunokawa, H.; Parke, S.J.; Zukanovich Funchal, R.; /Sao Paulo U.

    2006-07-01

    Recently a new method for determining the neutrino mass hierarchy by comparing the effective values of the atmospheric {Delta}m{sup 2} measured in the electron neutrino disappearance channel, {Delta}m{sup 2}(ee), with the one measured in the muon neutrino disappearance channel, {Delta}m{sup 2}({mu}{mu}), was proposed. If {Delta}m{sup 2}(ee) is larger (smaller) than {Delta}m{sup 2} ({mu}{mu}) the hierarchy is of the normal (inverted) type. We re-examine this proposition in the light of two very high precision measurements: {Delta}m{sup 2}({mu}{mu}) that may be accomplished by the phase II of the Tokai-to-Kamioka (T2K) experiment, for example, and {Delta}m{sup 2}(ee) that can be envisaged using the novel Moessbauer enhanced resonant {bar {nu}}{sub e} absorption technique. Under optimistic assumptions for the systematic uncertainties of both measurements, we estimate the parameter region of ({theta}{sub 13}, {delta}) in which the mass hierarchy can be determined. If {theta}{sub 13} is relatively large, sin{sup 2} 2{theta}{sub 13} {approx}> 0.05, and both of {Delta}m{sup 2}(ee) and {Delta}m{sup 2}({mu}{mu}) can be measured with the precision of {approx} 0.5 % it is possible to determine the neutrino mass hierarchy at > 95% CL for 0.3{pi} {approx}< {delta} {approx}< 1.7 {pi} for the current best fit values of all the other oscillation parameters.

  10. Evaluation of precision estimates for fiber-dimensional and electrical hygrometers for water activity determinations.

    PubMed

    Stroup, W H; Peeler, J T; Smith, K

    1987-01-01

    The precision of instruments used in 3 collaborative studies conducted within the Food and Drug Administration over a 4-year period (1981, 1982, 1984) for water activity (aw) determinations according to the official AOAC method is evaluated. Calibration responses of the instruments were tested for linearity over the aw range from 0.75 to 0.97. Average absolute percent difference between predicted and assigned aw values for the linear model ranged from 0.3 to 0.7% for a fiber-dimensional hygrometer (Abbeon) and 3 electrical hygrometers (Beckman, Rotronics, and Weather Measure). The calibration responses for another electrical hygrometer (Hygrodynamics) were nonlinear. The fiber-dimensional hygrometer yielded mean aw values and precision estimates that did not differ significantly from those obtained with the electrical hygrometers for (NH4)2SO4slush, KNO3 slush, sweetened condensed milk, pancake syrup, and cheese spread. However, the mean aw value for a soy sauce was 0.838 for the electrical hygrometers compared with 0.911 for the fiber-dimensional hygrometer. The fiber-dimensional hygrometer was affected by a volatile component(s) in the soy sauce that caused an erroneously high aw value. Pooled estimates of reproducibility (Sx) in the 3 studies were 0.008 for the fiber-dimensional hygrometer and 0.010 for the electrical hygrometers; these values were not significantly different from those reported in the study that verified the current official AOAC method.

  11. Evaluation of precision estimates for fiber-dimensional and electrical hygrometers for water activity determinations.

    PubMed

    Stroup, W H; Peeler, J T; Smith, K

    1987-01-01

    The precision of instruments used in 3 collaborative studies conducted within the Food and Drug Administration over a 4-year period (1981, 1982, 1984) for water activity (aw) determinations according to the official AOAC method is evaluated. Calibration responses of the instruments were tested for linearity over the aw range from 0.75 to 0.97. Average absolute percent difference between predicted and assigned aw values for the linear model ranged from 0.3 to 0.7% for a fiber-dimensional hygrometer (Abbeon) and 3 electrical hygrometers (Beckman, Rotronics, and Weather Measure). The calibration responses for another electrical hygrometer (Hygrodynamics) were nonlinear. The fiber-dimensional hygrometer yielded mean aw values and precision estimates that did not differ significantly from those obtained with the electrical hygrometers for (NH4)2SO4slush, KNO3 slush, sweetened condensed milk, pancake syrup, and cheese spread. However, the mean aw value for a soy sauce was 0.838 for the electrical hygrometers compared with 0.911 for the fiber-dimensional hygrometer. The fiber-dimensional hygrometer was affected by a volatile component(s) in the soy sauce that caused an erroneously high aw value. Pooled estimates of reproducibility (Sx) in the 3 studies were 0.008 for the fiber-dimensional hygrometer and 0.010 for the electrical hygrometers; these values were not significantly different from those reported in the study that verified the current official AOAC method. PMID:3436906

  12. Precise Determination of the Lyman-1 Transition Energy in Hydrogen-like Gold Ions with Microcalorimeters

    NASA Astrophysics Data System (ADS)

    Kraft-Bermuth, S.; Andrianov, V.; Bleile, A.; Echler, A.; Egelhof, P.; Grabitz, P.; Kilbourne, C.; Kiselev, O.; McCammon, D.; Scholz, P.

    2014-09-01

    The precise determination of the transition energy of the Lyman-1 line in hydrogen-like heavy ions provides a sensitive test of quantum electrodynamics in very strong Coulomb fields. We report the determination of the Lyman-1 transition energy of gold ions (Au) with microcalorimeters at the experimental storage ring at GSI. X-rays produced by the interaction of 125 MeV/u Au ions with an internal argon gas-jet target were detected. The detector array consisted of 14 pixels with silicon thermistors and Sn absorbers, for which an energy resolution of 50 eV for an X-ray energy of 59.5 keV was obtained in the laboratory. The Lyman-1 transition energy was determined for each pixel in the laboratory frame, then transformed into the emitter frame and averaged. A Dy-159 source was used for energy calibration. The absolute positions of the detector pixels, which are needed for an accurate correction of the Doppler shift, were determined by topographic measurements and by scanning a collimated Am-241 source across the cryostat window. The energy of the Lyman-1 line in the emitter frame is eV, in good agreement with theoretical predictions. The systematic error is dominated by the uncertainty in the position of the cryostat relative to the interaction region of beam and target.

  13. Precise determination of cadmium isotope fractionation in seawater by double spike MC-ICPMS

    NASA Astrophysics Data System (ADS)

    Ripperger, S.; Rehkämper, M.

    2007-02-01

    A new technique has been developed for the accurate and precise determination of the stable Cd isotope composition of seawater. The method utilizes a 110Cd- 111Cd double spike, and it involves separation of Cd from seawater by column chromatography and isotopic analyses by multiple collector inductively coupled plasma mass spectrometry. As a by-product, it also generates precise Cd concentration data. Repeated analyses of three pure Cd reference materials and three seawater samples yielded reproducibilities of about ±1.0 to ±1.6 ɛ114/110Cd (2 SD), based on measurements that each consumed about ˜8 ng of natural Cd ( ɛ114/110Cd is the deviation of the 114Cd/ 110Cd isotope ratio of a sample from the standard in parts per 10,000). This demonstrates that the new double spike technique is superior to published methods of Cd isotope analyses, with regard to the acquisition of precise data for samples of limited size. Additional experiments showed that as little as 1-5 ng of seawater Cd could be analyzed with a precision of about ±2 to ±6 ɛ114/110Cd (2 SD). The accuracy of the seawater isotope data was ascertained by experiments in which a Cd-free seawater matrix was doped with small quantities of isotopically well-characterized Cd. Repeated mass scans that were carried out on purified Cd fractions of several samples furthermore demonstrated the absence of significant spectral interferences. The isotope data that were acquired for the three seawater samples reveal, for the first time, small but resolvable Cd isotope fractionations in the marine environment. Cadmium-rich intermediate water from the North Pacific was found to have an isotope composition of ɛ114/110Cd = 3.2 ± 1.0. In contrast, Cd-depleted seawater from the upper water column of the Atlantic and Arctic Oceans displayed isotope compositions of ɛ114/110Cd = 6.4 ± 1.1 and 6.6 ± 1.6, respectively. These observations are in accord with the interpretation that the isotope effects are due to the

  14. Sugar loss and enzyme inhibition due to oligosaccharide accumulation during high solids-loading enzymatic hydrolysis

    DOE PAGESBeta

    Xue, Saisi; Uppugundla, Nirmal; Bowman, Michael J.; Cavalier, David; Da Costa Sousa, Leonardo; Dale, Bruce E.; Balan, Venkatesh

    2015-11-26

    inhibitory effects of oligosaccharides on commercial enzymes. In conclusion, the carbohydrate composition of the recalcitrant oligosaccharides, ratios of different DP oligomers and their distribution profiles were determined. Recalcitrance and enzyme inhibition studies help determine whether the commercial enzyme mixtures lack the enzyme activities required to completely de-polymerize the plant cell wall. Such studies clarify the reasons for oligosaccharide accumulation and contribute to strategies by which oligosaccharides can be converted into fermentable sugars and provide higher biofuel yields with less enzyme.« less

  15. Sugar loss and enzyme inhibition due to oligosaccharide accumulation during high solids-loading enzymatic hydrolysis

    SciTech Connect

    Xue, Saisi; Uppugundla, Nirmal; Bowman, Michael J.; Cavalier, David; Da Costa Sousa, Leonardo; Dale, Bruce E.; Balan, Venkatesh

    2015-11-26

    inhibitory effects of oligosaccharides on commercial enzymes. In conclusion, the carbohydrate composition of the recalcitrant oligosaccharides, ratios of different DP oligomers and their distribution profiles were determined. Recalcitrance and enzyme inhibition studies help determine whether the commercial enzyme mixtures lack the enzyme activities required to completely de-polymerize the plant cell wall. Such studies clarify the reasons for oligosaccharide accumulation and contribute to strategies by which oligosaccharides can be converted into fermentable sugars and provide higher biofuel yields with less enzyme.

  16. Analytical methodology for determination of helicopter IFR precision approach requirements. [pilot workload and acceptance level

    NASA Technical Reports Server (NTRS)

    Phatak, A. V.

    1980-01-01

    A systematic analytical approach to the determination of helicopter IFR precision approach requirements is formulated. The approach is based upon the hypothesis that pilot acceptance level or opinion rating of a given system is inversely related to the degree of pilot involvement in the control task. A nonlinear simulation of the helicopter approach to landing task incorporating appropriate models for UH-1H aircraft, the environmental disturbances and the human pilot was developed as a tool for evaluating the pilot acceptance hypothesis. The simulated pilot model is generic in nature and includes analytical representation of the human information acquisition, processing, and control strategies. Simulation analyses in the flight director mode indicate that the pilot model used is reasonable. Results of the simulation are used to identify candidate pilot workload metrics and to test the well known performance-work-load relationship. A pilot acceptance analytical methodology is formulated as a basis for further investigation, development and validation.

  17. Sequential filter design for precision orbit determination and physical constant refinement

    NASA Technical Reports Server (NTRS)

    Curkendall, D. W.; Leondes, C. T.

    1974-01-01

    Earth-based spacecraft tracking data have historically been processed with classical least squares filtering techniques both for navigation purposes and for physical constant determination. The small, stochastic nongravitational forces acting on the spacecraft are described to motivate the use of sequential estimation as an alternative to the least squares fitting procedures. The stochastic forces are investigated both in terms of their effect on the tracking data and their influence on estimation accuracy. A flexible sequential filter design which leaves the existing trajectory, variational equations, data observable and partial computations undisturbed is described. A detailed filter design is presented that meets the precision demands and flexibility requirements of deep space navigation and of scientific problems.

  18. Precise Orbit Determination for LEO Spacecraft Using GNSS Tracking Data from Multiple Antennas

    NASA Technical Reports Server (NTRS)

    Kuang, Da; Bertiger, William; Desai, Shailen; Haines, Bruce

    2010-01-01

    To support various applications, certain Earth-orbiting spacecrafts (e.g., SRTM, COSMIC) use multiple GNSS antennas to provide tracking data for precise orbit determination (POD). POD using GNSS tracking data from multiple antennas poses some special technical issues compared to the typical single-antenna approach. In this paper, we investigate some of these issues using both real and simulated data. Recommendations are provided for POD with multiple GNSS antennas and for antenna configuration design. The observability of satellite position with multiple antennas data is compared against single antenna case. The impact of differential clock (line biases) and line-of-sight (up, along-track, and cross-track) on kinematic and reduced-dynamic POD is evaluated. The accuracy of monitoring the stability of the spacecraft structure by simultaneously performing POD of the spacecraft and relative positioning of the multiple antennas is also investigated.

  19. Advanced application flight experiments precision attitude determination system. Volume 2: System tests

    NASA Technical Reports Server (NTRS)

    1976-01-01

    The performance capability of each of two precision attitude determination systems (PADS), one using a strapdown star tracker, and the other using a single-axis gimbal star tracker was measured in the laboratory under simulated orbit conditions. The primary focus of the evaluation was on the contribution to the total system accuracy by the star trackers, and the effectiveness of the software algorithms in functioning with actual sensor signals. A brief description of PADS, the laboratory test configuration and the test facility, is given along with a discussion of the data handling and display, laboratory computer programs, PADS performance evaluation programs, and the strapdown and gimbal system tests. Results are presented and discussed.

  20. High precision mapping of kidney stones using μ-IR spectroscopy to determine urinary lithogenesis.

    PubMed

    Blanco, Francisco; Ortiz-Alías, Pilar; López-Mesas, Montserrat; Valiente, Manuel

    2015-06-01

    Evolution of urinary lithiasis is determined by the metabolism and life-style of the related patient. The appropriate classification of the stone is mandatory for the identification of the lithogenic process. In this study, cros-sections from a single stone of each of the most frequent urolithiasis types (calcium oxalate mono and dihydrate and carbonate apatite) have been selected and imaged using IR microspectroscopy. Moreover, the use of high definition sFTIR (synchrotron source) has revealed hidden information to the conventional FTIR. This work has demonstrated that minor components become key factors on the description of the stages of stone formation. Intensity map for COM (1630 cm(-1) peak). The high spatial definition achieved is key for the precise description of the kidney stone history.

  1. Invited Article: A precise instrument to determine the Planck constant, and the future kilogram.

    PubMed

    Haddad, D; Seifert, F; Chao, L S; Li, S; Newell, D B; Pratt, J R; Williams, C; Schlamminger, S

    2016-06-01

    A precise instrument, called a watt balance, compares mechanical power measured in terms of the meter, the second, and the kilogram to electrical power measured in terms of the volt and the ohm. A direct link between mechanical action and the Planck constant is established by the practical realization of the electrical units derived from the Josephson and the quantum Hall effects. We describe in this paper the fourth-generation watt balance at the National Institute of Standards and Technology (NIST), and report our initial determination of the Planck constant obtained from data taken in late 2015 and the beginning of 2016. A comprehensive analysis of the data and the associated uncertainties led to the SI value of the Planck constant, h = 6.626 069 83(22) × 10(-34) J s. The relative standard uncertainty associated with this result is 34 × 10(-9).

  2. Invited Article: A precise instrument to determine the Planck constant, and the future kilogram

    NASA Astrophysics Data System (ADS)

    Haddad, D.; Seifert, F.; Chao, L. S.; Li, S.; Newell, D. B.; Pratt, J. R.; Williams, C.; Schlamminger, S.

    2016-06-01

    A precise instrument, called a watt balance, compares mechanical power measured in terms of the meter, the second, and the kilogram to electrical power measured in terms of the volt and the ohm. A direct link between mechanical action and the Planck constant is established by the practical realization of the electrical units derived from the Josephson and the quantum Hall effects. We describe in this paper the fourth-generation watt balance at the National Institute of Standards and Technology (NIST), and report our initial determination of the Planck constant obtained from data taken in late 2015 and the beginning of 2016. A comprehensive analysis of the data and the associated uncertainties led to the SI value of the Planck constant, h = 6.626 069 83(22) × 10-34 J s. The relative standard uncertainty associated with this result is 34 × 10-9.

  3. High-Precision Determination of the Electric and Magnetic Form Factors of the Proton

    SciTech Connect

    Bernauer, J. C.; Achenbach, P.; Ayerbe Gayoso, C.; Boehm, R.; Distler, M. O.; Doria, L.; Esser, A.; Friedrich, J.; Gomez Rodriguez de la Paz, M.; Merkel, H.; Middleton, D. G.; Mueller, U.; Nungesser, L.; Pochodzalla, J.; Sanchez Majos, S.; Schlimme, B. S.; Walcher, Th.; Weinriefer, M.; Bosnar, D.; Makek, M.

    2010-12-10

    New precise results of a measurement of the elastic electron-proton scattering cross section performed at the Mainz Microtron MAMI are presented. About 1400 cross sections were measured with negative four-momentum transfers squared up to Q{sup 2}=1 (GeV/c){sup 2} with statistical errors below 0.2%. The electric and magnetic form factors of the proton were extracted by fits of a large variety of form factor models directly to the cross sections. The form factors show some features at the scale of the pion cloud. The charge and magnetic radii are determined to be {sup 1/2}=0.879(5){sub stat}(4){sub syst}(2){sub model}(4){sub group} fm and {sup 1/2}=0.777(13){sub stat}(9){sub syst}(5){sub model}(2){sub group} fm.

  4. Entry Abort Determination Using Non-Adaptive Neural Networks for Mars Precision Landers

    NASA Technical Reports Server (NTRS)

    Graybeal, Sarah R.; Kranzusch, Kara M.

    2005-01-01

    The 2009 Mars Science Laboratory (MSL) will attempt the first precision landing on Mars using a modified version of the Apollo Earth entry guidance program. The guidance routine, Entry Terminal Point Controller (ETPC), commands the deployment of a supersonic parachute after converging the range to the landing target. For very dispersed cases, ETPC may not converge the range to the target and safely command parachute deployment within Mach number and dynamic pressure constraints. A full-lift up abort can save 85% of these failed trajectories while abandoning the precision landing objective. Though current MSL requirements do not call for an abort capability, an autonomous abort capability may be desired, for this mission or future Mars precision landers, to make the vehicle more robust. The application of artificial neural networks (NNs) as an abort determination technique was evaluated by personnel at the National Aeronautics and Space Administration (NASA) Johnson Space Center (JSC). In order to implement an abort, a failed trajectory needs to be recognized in real time. Abort determination is dependent upon several trajectory parameters whose relationships to vehicle survival are not well understood, and yet the lander must be trained to recognize unsafe situations. Artificial neural networks (NNs) provide a way to model these parameters and can provide MSL with the artificial intelligence necessary to independently declare an abort. Using the 2009 Mars Science Laboratory (MSL) mission as a case study, a non-adaptive NN was designed, trained and tested using Monte Carlo simulations of MSL descent and incorporated into ETPC. Neural network theory, the development history of the MSL NN, and initial testing with severe dust storm entry trajectory cases are discussed in Reference 1 and will not be repeated here. That analysis demonstrated that NNs are capable of recognizing failed descent trajectories and can significantly increase the survivability of MSL for very

  5. Molecular Line Parameters Precisely Determined by a Cavity Ring-Down Spectrometer

    NASA Astrophysics Data System (ADS)

    Hu, Shui-Ming; Tan, Yan; Wang, Jin; Lu, Yan; Cheng, Cunfeng; Sun, Yu Robert; Liu, An-Wen

    2015-06-01

    A cavity ring-down spectrometer calibrated with a set of precise atomic lines was built to retrieve precise line parameters in the near infrared.~[1,2] The spectrometer allows us to detect absorptions with a sensitivity of 10-11~cm-1 and a spectral precision up to 10-6~cm-1. Ro-vibrational lines in the second overtone of H_2 have been observed, including the extremely weak S_3(5) line with a line intensity less than 1× 10-30cm/molecule, which is among the weakest molecular lines detected by absorption in the gas phase. The absolute line positions of H_2 agree well with the high-level quantum chemical calculations including relativistic and QED corrections, with the deviation being less than 5× 10-4~cm-1.~[3,4] A quantitative study has also been carried out on the ν_1+5ν_3 band of CO_2.~[5] It was the first CO_2 band observed 80 years ago in the spectrum of Venus. We determined the line positions with an accuracy of 3× 10-5~cm-1, two orders of magnitude better than previous studies. Similar studies have been carried out to determine the line parameters of H_2O~[6] and CO~[7] in the spectral regions near 0.8~μm. The spectroscopic parameters can be used in varies studies, from the atmospheres of the earth-like planets to the test of fundamental physics. References [1] H. Pan, et al. Rev. Sci. Instrum. 82, 103110 (2011). [2] C.-F. Cheng, Opt. Expr. 20, 9956 (2012). [3] C.-F. Cheng, et al. Phys. Rev. A 85, 024501 (2012). [4] y. Tan, et al. J. Mol. Spectrosc. 300, 60 (2014). [5] Y. Lu, et al. Astrophys. J. 775, 71 (2013). [6] Y. Lu, et al. JQSRT 118, 96 (2013). [7] Y. Tan, et al. ``Ro-vibrational analysis of the fifth overtone of CO at 802~nm'', under preparation.

  6. Precise orbit determination for the FORMOSAT-3/COSMIC satellite mission using GPS

    NASA Astrophysics Data System (ADS)

    Hwang, Cheinway; Tseng, Tzu-Pang; Lin, Tingjung; Švehla, Dražen; Schreiner, Bill

    2009-05-01

    The joint Taiwan-US mission FORMOSAT-3/ COSMIC (COSMIC) was launched on April 17, 2006. Each of the six satellites is equipped with two POD antennas. The orbits of the six satellites are determined from GPS data using zero-difference carrier-phase measurements by the reduced dynamic and kinematic methods. The effects of satellite center of mass (COM) variation, satellite attitude, GPS antenna phase center variation (PCV), and cable delay difference on the COSMIC orbit determination are studied. Nominal attitudes estimated from satellite state vectors deliver a better orbit accuracy when compared to observed attitude. Numerical tests show that the COSMIC COM must be precisely calibrated in order not to corrupt orbit determination. Based on the analyses of the 5 and 6-h orbit overlaps of two 30-h arcs, orbit accuracies from the reduced dynamic and kinematic solutions are nearly identical and are at the 2-3 cm level. The mean RMS difference between the orbits from this paper and those from UCAR (near real-time) and WHU (post-processed) is about 10 cm, which is largely due to different uses of GPS ephemerides, high-rate GPS clocks and force models. The kinematic orbits of COSMIC are expected to be used for recovery of temporal variations in the gravity field.

  7. Chromatographic Separations of Enantiomers and Underivatized Oligosaccharides

    SciTech Connect

    Liu, Ying

    2004-01-01

    My graduate research has focused on separation science and bioanalytical analysis, which emphasized in method development. It includes three major areas: enantiomeric separations using high performance liquid chromatography (HPLC), Super/subcritical fluid chromatography (SFC), and capillary electrophoresis (CE); drug-protein binding behavior studies using CE; and carbohydrate analysis using liquid chromatograph-electrospray ionization mass spectrometry (LC-ESI-MS). Enantiomeric separations continue to be extremely important in the pharmaceutical industry. An in-depth evaluation of the enantiomeric separation capabilities of macrocyclic glycopeptides CSPs with SFC mobile phases was investigated using a set of over 100 chiral compounds. It was found that the macrocyclic based CSPs were able to separate enantiomers of various compounds with different polarities and functionalities. Seventy percent of all separations were achieved in less than 4 min due to the high flow rate (4.0 ml/min) that can be used in SFC. Drug-protein binding is an important process in determining the activity and fate of a drug once it enters the body. Two drug/protein systems have been studied using frontal analysis CE method. More sensitive fluorescence detection was introduced in this assay, which overcame the problem of low sensitivity that is common when using UV detection for drug-protein studies. In addition, the first usage of an argon ion laser with 257 nm beam coupled with CCD camera as a frontal analysis detection method enabled the simultaneous observation of drug fluorescence as well as the protein fluorescence. LC-ESI-MS was used for the separation and characterization of underivatized oligosaccharide mixtures. With the limits of detection as low as 50 picograms, all individual components of oligosaccharide mixtures (up to 11 glucose-units long) were baseline resolved on a Cyclobond I 2000 column and detected using ESI-MS. This system is characterized by high chromatographic

  8. Modeling of Non-Gravitational Forces for Precise and Accurate Orbit Determination

    NASA Astrophysics Data System (ADS)

    Hackel, Stefan; Gisinger, Christoph; Steigenberger, Peter; Balss, Ulrich; Montenbruck, Oliver; Eineder, Michael

    2014-05-01

    Remote sensing satellites support a broad range of scientific and commercial applications. The two radar imaging satellites TerraSAR-X and TanDEM-X provide spaceborne Synthetic Aperture Radar (SAR) and interferometric SAR data with a very high accuracy. The precise reconstruction of the satellite's trajectory is based on the Global Positioning System (GPS) measurements from a geodetic-grade dual-frequency Integrated Geodetic and Occultation Receiver (IGOR) onboard the spacecraft. The increasing demand for precise radar products relies on validation methods, which require precise and accurate orbit products. An analysis of the orbit quality by means of internal and external validation methods on long and short timescales shows systematics, which reflect deficits in the employed force models. Following the proper analysis of this deficits, possible solution strategies are highlighted in the presentation. The employed Reduced Dynamic Orbit Determination (RDOD) approach utilizes models for gravitational and non-gravitational forces. A detailed satellite macro model is introduced to describe the geometry and the optical surface properties of the satellite. Two major non-gravitational forces are the direct and the indirect Solar Radiation Pressure (SRP). The satellite TerraSAR-X flies on a dusk-dawn orbit with an altitude of approximately 510 km above ground. Due to this constellation, the Sun almost constantly illuminates the satellite, which causes strong across-track accelerations on the plane rectangular to the solar rays. The indirect effect of the solar radiation is called Earth Radiation Pressure (ERP). This force depends on the sunlight, which is reflected by the illuminated Earth surface (visible spectra) and the emission of the Earth body in the infrared spectra. Both components of ERP require Earth models to describe the optical properties of the Earth surface. Therefore, the influence of different Earth models on the orbit quality is assessed. The scope of

  9. Precise determination of U isotopic compositions in low concentration carbonate samples by MC-ICP-MS.

    PubMed

    Wang, Ruo-Mei; You, Chen-Feng

    2013-03-30

    We developed a fast and simple analytical procedure for precise determination of U isotopic compositions in low concentration natural samples. The main advantage of the new method is that it requires only 12ng U and can obtain all U isotopic ratios without using spike. Five carbonate reference materials (JCp-1, RKM-4, RKM-5, GBW04412 and GBW04413) and 3 international standards with different matrices (IAPSO, IRMM-3184 and CRM-U010) were analyzed for ((234)U/(238)U) and (238)U/(235)U ratios by MC-ICPMS. Using our method, the results for these standards are in close agreement with the certified values, 1.144 ± 0.004, 0.966 ± 0.004 and 0.990 ± 0.003 for ((234)U/(238)U) and 137.72 ± 0.13, 137.64 ± 0.15 and 98.63 ± 0.04 for (238)U/(235)U, in IAPSO, IRMM-3184 and CRM-U010, respectively. The long-term reproducibility of ((234)U/(238)U) and (238)U/(235)U is 0.970 ± 0.002 and 137.56 ± 0.09; 1.144 ± 0.004 and 137.72 ± 0.13, respectively, for in-house U solution and IAPSO. The new ((234)U/(238)U) results for carbonates show much better precision than previous studies and also reflect their age variability. The obtained (238)U/(235)U ratios, representing the first measurements in these carbonate specimens, are rather constant. The method described here requires only 12 ng of U for analysis and can be completed in 5.2 min. The approach provides a fast method to measure ((234)U/(238)U) and (238)U/(235)U ratios in sample matrices commonly encountered in studies of chemical weathering, oceanography and paleoclimatology. PMID:23598194

  10. Impact of Ionosphere on GPS-based Precise Orbit Determination of Low Earth Orbiters

    NASA Astrophysics Data System (ADS)

    Arnold, D.; Jaeggi, A.; Beutler, G.; Meyer, U.; Schaer, S.

    2015-12-01

    Deficiencies in geodetic products derived from the orbital trajectories of Low Earth Orbiting (LEO) satellites determined by GPS-based Precise Orbit Determination (POD) were identified in recent years. The precise orbits of the Gravity Field and Steady-State Ocean Circulation Explorer (GOCE) mission are, e.g., severely affected by an increased position noise level over the geomagnetic poles and spurious signatures along the Earth's geomagnetic equator (see Fig. 1, which shows the carrier phase residuals of a reduced-dynamic orbit determination for GOCE in m). Such degradations may directly map into the gravity fields recovered from the orbits. They are related to a disturbed GPS signal propagation through the Earth's ionosphere and indicate that the GPS observation model and/or the data pre-processing need to be improved. While GOCE was the first mission where severe ionosphere-related problems became obvious, the GPS-based LEO POD of satellites of the more recent missions Swarm and Sentinel-1A turn out to be affected, as well. We characterize the stochastic and systematic behavior of the ionosphere by analyzing GPS data collected by the POD antennas of various LEO satellites covering a broad altitude range (e.g., GRACE, GOCE and Swarm) and for periods covering significant parts of an entire solar cycle, which probe substantially different ionosphere conditions. The information may provide the basis for improvements of data pre-processing to cope with the ionosphere-induced problems of LEO POD. The performance of cycle slip detection can, e.g., be degraded by large changes of ionospheric refraction from one measurement epoch to the next. Geographically resolved information on the stochastic properties of the ionosphere above the LEOs provide more realistic threshold values for cycle slip detection algorithms. Removing GPS data showing large ionospheric variations is a crude method to mitigate the ionosphere-induced artifacts in orbit and gravity field products

  11. Application of Vehicle Dynamic Modeling in Uavs for Precise Determination of Exterior Orientation

    NASA Astrophysics Data System (ADS)

    Khaghani, M.; Skaloud, J.

    2016-06-01

    Advances in unmanned aerial vehicles (UAV) and especially micro aerial vehicle (MAV) technology together with increasing quality and decreasing price of imaging devices have resulted in growing use of MAVs in photogrammetry. The practicality of MAV mapping is seriously enhanced with the ability to determine parameters of exterior orientation (EO) with sufficient accuracy, in both absolute and relative senses (change of attitude between successive images). While differential carrier phase GNSS satisfies cm-level positioning accuracy, precise attitude determination is essential for both direct sensor orientation (DiSO) and integrated sensor orientation (ISO) in corridor mapping or in block configuration imaging over surfaces with low texture. Limited cost, size, and weight of MAVs represent limitations on quality of onboard navigation sensors and puts emphasis on exploiting full capacity of available resources. Typically short flying times (10-30 minutes) also limit the possibility of estimating and/or correcting factors such as sensor misalignment and poor attitude initialization of inertial navigation system (INS). This research aims at increasing the accuracy of attitude determination in both absolute and relative senses with no extra sensors onboard. In comparison to classical INS/GNSS setup, novel approach is presented here to integrated state estimation, in which vehicle dynamic model (VDM) is used as the main process model. Such system benefits from available information from autopilot and physical properties of the platform in enhancing performance of determination of trajectory and parameters of exterior orientation consequently. The navigation system employs a differential carrier phase GNSS receiver and a micro electro-mechanical system (MEMS) grade inertial measurement unit (IMU), together with MAV control input from autopilot. Monte-Carlo simulation has been performed on trajectories for typical corridor mapping and block imaging. Results reveal

  12. Precise orbit determination with the DORIS/SPOT2 system: First results

    NASA Astrophysics Data System (ADS)

    Nouel, F.; Berthias, J. P.; Broca, P.; Comps, A.; Deleuze, M.; Guitart, A.; Jayles, C.; Laudet, P.; Pierret, C.; Piuzzi, A.

    1991-12-01

    One of the main challenges of the French/U.S. oceanographic mission, TOPEX/Poseidon, is the need to determine the position of the spacecraft with an accuracy of 10 cm in the radial direction after 10 days. In order to reach this level of accuracy, a tracking system, Doppler Orbitography and Radiopositioning Integrated by Satellite (DORIS), was developed. This system is composed of a network of about 40 dual frequency beacons scattered all over the world and a receiver on board a spacecraft. The spaceborne processor integrates the Doppler shifts over 10 second intervals and downloads the results and the measurements time tags to the ground control center. An orbit determination software, ZOOM, was developed to generate precise orbits. This program has the capability to process the DORIS data type in addition to all other conventional measurements. As a proof of concept and feasibility test, the first DORIS receiver was placed on the SPOT 2 Earth observation satellite. The whole system (hardware and software) has worked successfully since Feb. 1990, enabling the routine computation of the orbit of SPOT 2 for more than one year. An overview of the orbit production process including the operational set up and the dynamical and measurement models is presented. The orbit quality assessment procedures are described and the ability to ensure the consistency of the system in spite of the large number of independent oscillators, is demonstrated.

  13. Precise timing of the last interglacial period from mass spectrometric determination of thorium-230 in corals

    NASA Technical Reports Server (NTRS)

    Chen, J. H.; Wasserburg, G. J.; Ku, T.-L.; Edwards, R. Lawrence

    1987-01-01

    The development of mass spectrometric techniques for determination of Th-230 abundance has made it possible to reduce analytical errors in (U-238)-(U-234)-(Th-230) dating of corals even with very small samples. Samples of 6 x 10 to the 8th atoms of Th-230 can be measured to an accuracy of + or - 3 percent (2sigma), and 3 x 10 to the 10th atoms of Th-230 can be measured to an accuracy of + or - 0.2 percent. The time range over which useful age data on corals can be obtained now ranges from about 50 to about 500,000 years. For young corals, this approach may be preferable to C-14 dating. The precision with which the age of a coral can now be determined should make it possible to critically test the Milankovitch hypothesis concerning Pleistocene climate fluctuations. Analyses of a number of corals that grew during the last interglacial period yield ages of 122,000 to 130,000 years. The ages coincide with, or slightly post-date, the summer solar insolation high at 65 deg N latitude which occurred 128,000 years ago. This supports the idea that changes in Pleistocene climate can be the result of variations in the distribution of solar insolation caused by changes in the geometry of the earth's orbit and rotation axis.

  14. High Precision, Directly Determined Radii and Effective Temperatures for Giant Stars

    NASA Astrophysics Data System (ADS)

    van Belle, Gerard

    have demonstrated the potential of all aspects of this program, and through the proposed effort will unify the diverse components to study these giants. A homogenous catalog of linear radii and effective temperatures for hundreds of giants will be generated, which in turn will be used to calibrate radius and temperature scales for application to the broad population of giants. Significance. Fundamental temperature and radius scales are used throughout stellar astrophysics, including stellar structure studies, stellar modeling, galactic spectral synthesis, planet detection studies, and star formation theory. We expect to reduce the error in effective temperature calibration by 2-4x, and the error in linear radius by 2-3x or more. A high- precision improvement to these scales will, in turn, broadly advance a wide swath of studies that depend on precisely knowing the radii and temperature of stars. This proposal aims to produce the definitive linear radius and effective temperature scales for giants. A significant improvement in the determinations of the radii and effective temperatures of giant stars across the HR diagram will have far reaching consequences across the broad expanse of astrophysical research. Relevance to NASA. High-precision calibrations of temperature scales are essential to flux calibrations of past and ongoing NASA science satellite observations, such as those from Spitzer and WISE, and a significantly improved linear radius reference markedly improves Kepler discoveries in both the exoplanet and asteroseismology areas. In addition to the high scientific potential of this program, it also provides technical benefits by furthering interferometric techniques that will be critical for future high angular resolution astronomy.

  15. Precise Orbit Determination of the two LAGEOS and LARES satellites and the LARASE activities

    NASA Astrophysics Data System (ADS)

    Massimo Lucchesi, David; Peron, Roberto; Anselmo, Luciano; Bassan, Massimo; Magnafico, Carmelo; Nobili, Anna Maria; Pardini, Carmen; Pucacco, Giuseppe; Stanga, Ruggero; Visco, Massimo

    2016-04-01

    The LAser RAnged Satellites Experiment (LARASE) research program aims to provide an original contribution in testing and verifying Einstein's theory of General Relativity (GR) in its Weak-Field and Slow-Motion (WFSM) limit by means of the powerful Satellite Laser Ranging (SLR) technique. Therefore, in this perspective, a Precise Orbit Determination (POD) of a dedicated set of passive laser-ranged satellites is required. In particular, the joint analysis of the orbit of the two LAGEOS (LAser GEOdynamic Satellite) satellites with that of the more recently launched LARES (LAser RElativity Satellite) satellite will be exploited in order to obtain precise measurements of the gravitational interaction in the field of the Earth. A major point to be reached within the activities of LARASE is to provide the relativistic measurements with an error budget of the various systematic effects (both gravitational and non-gravitational) that be robust and reliable. This requires a careful analysis of the various disturbing effects on the orbit of the considered satellites, especially for the new LARES. This activity has been planned both for the gravitational and the non-gravitational perturbations (NGP). Therefore, we started to re-visit, update and improve previous dynamical models, especially for the NGP, and we also developed new models in such a way to improve the current dynamical models used in space geodesy to account for the main perturbations acting on the orbit of LAGEOS and LARES. We focused especially on the spin dynamics, the drag effects (especially for LARES, because of its much lower height with respect to the two LAGEOS) and, at a preliminary level, the thermal ones that, as it is well known from the literature, are very important for the LAGEOS satellites. These studies are of fundamental importance not only for the objective of a reliable error budget, but also in order to improve the POD. In this context, because of the importance of the LAGEOS satellites in

  16. Increased precision for analysis of protein-ligand dissociation constants determined from chemical shift titrations.

    PubMed

    Markin, Craig J; Spyracopoulos, Leo

    2012-06-01

    NMR is ideally suited for the analysis of protein-protein and protein ligand interactions with dissociation constants ranging from ~2 μM to ~1 mM, and with kinetics in the fast exchange regime on the NMR timescale. For the determination of dissociation constants (K ( D )) of 1:1 protein-protein or protein-ligand interactions using NMR, the protein and ligand concentrations must necessarily be similar in magnitude to the K ( D ), and nonlinear least squares analysis of chemical shift changes as a function of ligand concentration is employed to determine estimates for the parameters K ( D ) and the maximum chemical shift change (Δδ(max)). During a typical NMR titration, the initial protein concentration, [P (0)], is held nearly constant. For this condition, to determine the most accurate parameters for K ( D ) and Δδ(max) from nonlinear least squares analyses requires initial protein concentrations that are ~0.5 × K ( D ), and a maximum concentration for the ligand, or titrant, of ~10 × [P (0)]. From a practical standpoint, these requirements are often difficult to achieve. Using Monte Carlo simulations, we demonstrate that co-variation of the ligand and protein concentrations during a titration leads to an increase in the precision of the fitted K ( D ) and Δδ(max) values when [P (0)] > K ( D ). Importantly, judicious choice of protein and ligand concentrations for a given NMR titration, combined with nonlinear least squares analyses using two independent variables (ligand and protein concentrations) and two parameters (K ( D ) and Δδ(max)) is a straightforward approach to increasing the accuracy of measured dissociation constants for 1:1 protein-ligand interactions.

  17. Methodologies for screening of bacteria-carbohydrate interactions: anti-adhesive milk oligosaccharides as a case study.

    PubMed

    Lane, Jonathan A; Mariño, Karina; Rudd, Pauline M; Carrington, Stephen D; Slattery, Helen; Hickey, Rita M

    2012-07-01

    Many studies have demonstrated the capacity of glycan-based compounds to disrupt microbial binding to mucosal epithelia. Therefore, oligosaccharides have potential application in the prevention of certain bacterial diseases. However, current screening methods for the identification of anti-adhesive oligosaccharides have limitations: they are time-consuming and require large amounts of oligosaccharides. There is a need to develop analytical techniques which can quickly screen for, and structurally define, anti-adhesive oligosaccharides prior to using human cell line models of infection. Considering this, we have developed a rapid method for screening complex oligosaccharide mixtures for potential anti-adhesive activity against bacteria. Our approach involves the use of whole bacterial cells to "deplete" free oligosaccharides from solution. As a case study, the free oligosaccharides from the colostrum of Holstein Friesian cows were screened for interactions with whole Escherichia coli cells. Reductions in oligosaccharide concentrations were determined by High pH Anion Exchange Chromatography and Hydrophilic Interaction Liquid Chromatography (HILIC-HPLC). Oligosaccharide structures were confirmed by a combination of HILIC-HPLC, exoglycosidase digestion and off-line negative ion mode MS/MS. The depletion assay confirmed selective bacterial interaction with certain bovine oligosaccharides which in previous studies, by other methodologies, had been shown to interact with E. coli. In particular, the bacterial cells depleted the following oligosaccharides in a population dependent manner: 3'-sialyllactose, disialyllactose, and 6'-sialyllactosamine. The assay methodology was further validated by studies in which we demonstrated the inhibitory activity of 3'-sialyllactose, and a mixture of bovine colostrum oligosaccharides, on E. coli adhesion to differentiated HT-29 cells. PMID:22507447

  18. Precise timing of the last interglacial period from mass spectrometric determination of thorium-230 in corals

    SciTech Connect

    Edwards, R.L.; Chen, J.H.; Ku, T.L.; Wasserburg, G.J.

    1987-06-19

    The development of mass spectrometric techniques for determination of STTh abundance has made it possible to reduce analytical errors in STYU-STUU-STTh dating of corals even with very small samples. Samples of 6 x 10Y atoms of STTh can be measured to an accuracy of +/- 3% (2sigma) and 3 x 10 atoms of STTh can be measured to an accuracy of +/- 0.2%. The time range over which useful age data on corals can be obtained now ranges from about 50 to about 500,000 years. For young corals, this approach may be preferable to UC dating. The precision should make it possible to critically test the Milankovitch hypothesis concerning Pleistocene climate fluctuations. Analyses of a number of corals that grew during the last interglacial period yield ages of 122,000 to 130,000 years. The ages coincide with, or slightly postdate, the summer solar insolation high at 65N latitude which occurred 128,000 years ago. This supports the idea that changes in Pleistocene climate can be the result of variations in the distribution of solar insolation caused by changes in the geometry of the earth's orbit and rotation axis.

  19. A Novel Method for Precise Onboard Real-Time Orbit Determination with a Standalone GPS Receiver

    PubMed Central

    Wang, Fuhong; Gong, Xuewen; Sang, Jizhang; Zhang, Xiaohong

    2015-01-01

    Satellite remote sensing systems require accurate, autonomous and real-time orbit determinations (RTOD) for geo-referencing. Onboard Global Positioning System (GPS) has widely been used to undertake such tasks. In this paper, a novel RTOD method achieving decimeter precision using GPS carrier phases, required by China’s HY2A and ZY3 missions, is presented. A key to the algorithm success is the introduction of a new parameter, termed pseudo-ambiguity. This parameter combines the phase ambiguity, the orbit, and clock offset errors of the GPS broadcast ephemeris together to absorb a large part of the combined error. Based on the analysis of the characteristics of the orbit and clock offset errors, the pseudo-ambiguity can be modeled as a random walk, and estimated in an extended Kalman filter. Experiments of processing real data from HY2A and ZY3, simulating onboard operational scenarios of these two missions, are performed using the developed software SATODS. Results have demonstrated that the position and velocity accuracy (3D RMS) of 0.2–0.4 m and 0.2–0.4 mm/s, respectively, are achieved using dual-frequency carrier phases for HY2A, and slightly worse results for ZY3. These results show it is feasible to obtain orbit accuracy at decimeter level of 3–5 dm for position and 0.3–0.5 mm/s for velocity with this RTOD method. PMID:26690149

  20. A Novel Method for Precise Onboard Real-Time Orbit Determination with a Standalone GPS Receiver.

    PubMed

    Wang, Fuhong; Gong, Xuewen; Sang, Jizhang; Zhang, Xiaohong

    2015-12-04

    Satellite remote sensing systems require accurate, autonomous and real-time orbit determinations (RTOD) for geo-referencing. Onboard Global Positioning System (GPS) has widely been used to undertake such tasks. In this paper, a novel RTOD method achieving decimeter precision using GPS carrier phases, required by China's HY2A and ZY3 missions, is presented. A key to the algorithm success is the introduction of a new parameter, termed pseudo-ambiguity. This parameter combines the phase ambiguity, the orbit, and clock offset errors of the GPS broadcast ephemeris together to absorb a large part of the combined error. Based on the analysis of the characteristics of the orbit and clock offset errors, the pseudo-ambiguity can be modeled as a random walk, and estimated in an extended Kalman filter. Experiments of processing real data from HY2A and ZY3, simulating onboard operational scenarios of these two missions, are performed using the developed software SATODS. Results have demonstrated that the position and velocity accuracy (3D RMS) of 0.2-0.4 m and 0.2-0.4 mm/s, respectively, are achieved using dual-frequency carrier phases for HY2A, and slightly worse results for ZY3. These results show it is feasible to obtain orbit accuracy at decimeter level of 3-5 dm for position and 0.3-0.5 mm/s for velocity with this RTOD method.

  1. Effect of Ocean Tide Models on the Precise Orbit Determination of Geodetic Satellites

    NASA Astrophysics Data System (ADS)

    Kubo-Oka, T.; Matsumoto, K.; Otsubo, T.; Gotoh, T.

    2005-12-01

    Several ocean tide models are tested with precise observation data of satellite laser ranging to geodetic satellites, Starlette and Stella. Four ocean models, NAO.99b, CSR 3.0 (standard model in IERS Conventions 2003), CSR 4.0, and GOT99.2b were implemented in our orbit analysis software "concerto ver. 4". NAO.99b model was developed by assimilating tidal solutions from TOPEX/POSEIDON altimeter data into hydrodynamical model. Eight constituents (M2, S2, K1, O1, N2, P1, K2, Q1) were taken into account in each ocean tide model. Moreover, eight additional constituents (M1, J1, OO1, 2N2, Mu2, Nu2, L2, T2) can be included in NAO.99b model. Effect of ocean tides on geopotential coefficients were computed to 20th order. SLR data to Starlette and Stella were divided into arcs of 7 days length and 52 arcs (Jan. 2 - Dec. 30, 2004) were analyzed. Using different ocean tide model, orbits of these satellites were determined and weighted rms of postfit residuals are compared. We found that the NAO.99b model with 16 constituents can reduce weighted rms of postfit residuals using to the level of about 6.0 cm (Starlette) and 9.6 cm (Stella). These values are about 3-5 % smaller compared to other ocean tide models.

  2. High-Precision Determination of the Pion-Nucleon σ Term from Roy-Steiner Equations.

    PubMed

    Hoferichter, Martin; Ruiz de Elvira, Jacobo; Kubis, Bastian; Meißner, Ulf-G

    2015-08-28

    We present a determination of the pion-nucleon (πN) σ term σ_{πN} based on the Cheng-Dashen low-energy theorem (LET), taking advantage of the recent high-precision data from pionic atoms to pin down the πN scattering lengths as well as of constraints from analyticity, unitarity, and crossing symmetry in the form of Roy-Steiner equations to perform the extrapolation to the Cheng-Dashen point in a reliable manner. With isospin-violating corrections included both in the scattering lengths and the LET, we obtain σ_{πN}=(59.1±1.9±3.0)  MeV=(59.1±3.5)  MeV, where the first error refers to uncertainties in the πN amplitude and the second to the LET. Consequences for the scalar nucleon couplings relevant for the direct detection of dark matter are discussed. PMID:26371645

  3. A Novel Method for Precise Onboard Real-Time Orbit Determination with a Standalone GPS Receiver.

    PubMed

    Wang, Fuhong; Gong, Xuewen; Sang, Jizhang; Zhang, Xiaohong

    2015-01-01

    Satellite remote sensing systems require accurate, autonomous and real-time orbit determinations (RTOD) for geo-referencing. Onboard Global Positioning System (GPS) has widely been used to undertake such tasks. In this paper, a novel RTOD method achieving decimeter precision using GPS carrier phases, required by China's HY2A and ZY3 missions, is presented. A key to the algorithm success is the introduction of a new parameter, termed pseudo-ambiguity. This parameter combines the phase ambiguity, the orbit, and clock offset errors of the GPS broadcast ephemeris together to absorb a large part of the combined error. Based on the analysis of the characteristics of the orbit and clock offset errors, the pseudo-ambiguity can be modeled as a random walk, and estimated in an extended Kalman filter. Experiments of processing real data from HY2A and ZY3, simulating onboard operational scenarios of these two missions, are performed using the developed software SATODS. Results have demonstrated that the position and velocity accuracy (3D RMS) of 0.2-0.4 m and 0.2-0.4 mm/s, respectively, are achieved using dual-frequency carrier phases for HY2A, and slightly worse results for ZY3. These results show it is feasible to obtain orbit accuracy at decimeter level of 3-5 dm for position and 0.3-0.5 mm/s for velocity with this RTOD method. PMID:26690149

  4. Use of hydrazine to release in intact and unreduced form both N- and O-linked oligosaccharides from glycoproteins.

    PubMed

    Patel, T; Bruce, J; Merry, A; Bigge, C; Wormald, M; Jaques, A; Parekh, R

    1993-01-19

    The use of hydrazine to release unreduced N- and O-linked oligosaccharides from glycoproteins has been investigated using several "standard" glycoproteins of previously defined glycosylation. It is shown that hydrazinolysis can be used to release intact N- and O-linked oligosaccharides in an unreduced form. The release of O-linked oligosaccharides occurs with a lower temperature dependence than the release of N-linked oligosaccharides, and the kinetic parameters governing release of oligosaccharides from these standard glycoproteins have been determined. These parameters allow a definition of reaction conditions under which anhydrous hydrazinolysis can be used to selectively release O-linked oligosaccharides (60 degrees C, 5 h) or release both N- and O-linked oligosaccharides (95 degrees C, 4 h) in high yield (> 85%) from all glycoproteins investigated (n = 11). Under these reaction conditions, the recovered N- and O-linked oligosaccharides are structurally intact (as judged by 600-MHz 1H-NMR, laser-desorption mass spectrometry, HPAEC-PAD, gel filtration, and glycosidase digestion), with the possible exception of certain N- and O-acyl substituents of sialic acid. This use of mild hydrazinolysis therefore allows both the simultaneous and sequential chemical release from glycoproteins of O- and N-linked oligosaccharides in their intact unreduced form.

  5. U-Pb systematics of the unique achondrite Ibitira: Precise age determination and petrogenetic implications

    NASA Astrophysics Data System (ADS)

    Iizuka, Tsuyoshi; Amelin, Yuri; Kaltenbach, Angela; Koefoed, Piers; Stirling, Claudine H.

    2014-05-01

    Ibitira is an unbrecciated, equilibrated vesicular basaltic achondrite that is considered to have originated on a parent body distinct from all other known meteorites. We present the first combined high-precision U and Pb isotopic data for this unique meteorite. The 238U/235U value of 137.777 ± 0.013 determined for the whole rock is comparable to values determined for bulk chondrites and other basaltic achondrites. This value results in corrections of -1.1 Ma for Pb-Pb dates calculated using the previously assumed invariant 238U/235U value of 137.88. Using the determined 238U/235U value, the 7 most radiogenic Pb isotopic analyses for acid-leached pyroxene-rich and whole rock fractions yield an isochron Pb-Pb age of 4556.75 ± 0.57 Ma, in excellent agreement with the results of Mn-Cr chronology which give the ages of 4557.4 ± 2.5 Ma and 4555.9 ± 3.2 Ma using the U-corrected Pb-Pb age of D'Orbigny as a time anchor. Along with the previously proposed thermal history of Ibitira and our closure temperature estimates for Pb diffusion, the Pb-Pb age is interpreted as the timing of the last chemical equilibration and coarse pyroxene exsolution that occurred during high temperature metamorphism. The metamorphism may have been caused by burial of Ibitira lava under successive lava flows and, if so, the Pb-Pb age should post-date the crystallization by a short time interval. The Pb isotopic data for acid leachates suggest partial re-equilibration of Pb between plagioclase and phosphate, perhaps during an impact event at 4.49 Ga, as recorded by K-Ar systematics. The whole rock 238U/204Pb indicates that compared to CI chondrites, Ibitira is less depleted in Pb than in some alkali elements despite a lower condensation temperature of Pb than the alkali elements. The restricted Pb depletion may reflect preferential concentration of metals with high fluid/melt partition coefficients including Pb and Zn as a result of fluid exsolution and migration within the parent magma. We

  6. A Rapid, Convenient, and Precise Method for the Absolute Determination of the Acceleration of Gravity.

    ERIC Educational Resources Information Center

    Manche, Emanuel P.

    1979-01-01

    Describes a compact and portable apparatus for the measurement, with a high degree of precision, the value of the gravitational acceleration g. The apparatus consists of a falling mercury drop and an electronic timing circuit. (GA)

  7. Precision determination of the pion form factor and calculation of the muon g-2

    NASA Astrophysics Data System (ADS)

    de Trocóniz, J. F.; Ynduráin, F. J.

    2002-05-01

    We perform a new calculation of the hadronic contributions, a(Hadronic), to the anomalous magnetic moment of the muon, aμ. For the low-energy contributions of order α2 we carry over an analysis of the pion form factor Fπ(t) using recent data both on e+e--->π+π- and τ+-->νbarτπ+π0. In this analysis we take into account that the phase of the form factor is equal to that of ππ scattering. This allows us to profit fully from analyticity properties so we can also use experimental information on Fπ(t) at spacelike t. At higher energy we use QCD to supplement experimental data, including the recent measurements of e+e--->hadrons both around 1 GeV and near the cbarc threshold. This yields a precise determination of the O(α2) and O(α2)+O(α3) hadronic part of the photon vacuum polarization 1011×a(2)(h.v.p.)=6909+/-64 1011×a(2+3)(h.v.p.)=7002+/-66. As by-products we also get the masses and widths of the ρ0, ρ+, and very accurate values for the charge radius and second coefficient of the pion. Adding the remaining order α3 hadronic contributions we find 1011×atheory(hadronic)=6993+/-69 (e+e-+τ+spacel). The error above includes statistical, systematic, and estimated theoretical errors. The figures given are obtained including τ decay data; if we restrict ourselves to e+e- data, slightly lower values and somewhat higher errors are found. This is to be compared with the figure obtained by subtracting pure electroweak contributions from the recent experimental value, obtained from measurements of the muon gyromagnetic ratio (g-2), which reads 1011×aexpt(hadronic)=7174+/-150.

  8. Initial results of precise orbit and clock determination for COMPASS navigation satellite system

    NASA Astrophysics Data System (ADS)

    Zhao, Qile; Guo, Jing; Li, Min; Qu, Lizhong; Hu, Zhigang; Shi, Chuang; Liu, Jingnan

    2013-05-01

    The development of the COMPASS satellite system is introduced, and the regional tracking network and data availability are described. The precise orbit determination strategy of COMPASS satellites is presented. Data of June 2012 are processed. The obtained orbits are evaluated by analysis of post-fit residuals, orbit overlap comparison and SLR (satellite laser ranging) validation. The RMS (root mean square) values of post-fit residuals for one month's data are smaller than 2.0 cm for ionosphere-free phase measurements and 2.6 m for ionosphere-free code observations. The 48-h orbit overlap comparison shows that the RMS values of differences in the radial component are much smaller than 10 cm and those of the cross-track component are smaller than 20 cm. The SLR validation shows that the overall RMS of observed minus computed residuals is 68.5 cm for G01 and 10.8 cm for I03. The static and kinematic PPP solutions are produced to further evaluate the accuracy of COMPASS orbit and clock products. The static daily COMPASS PPP solutions achieve an accuracy of better than 1 cm in horizontal and 3 cm in vertical. The accuracy of the COMPASS kinematic PPP solutions is within 1-2 cm in the horizontal and 4-7 cm in the vertical. In addition, we find that the COMPASS kinematic solutions are generally better than the GPS ones for the selected location. Furthermore, the COMPASS/GPS combinations significantly improve the accuracy of GPS only PPP solutions. The RMS values are basically smaller than 1 cm in the horizontal components and 3-4 cm in the vertical component.

  9. Determination of the thermal offset of the Eppley precision spectral pyranometer.

    PubMed

    Haeffelin, M; Kato, S; Smith, A M; Rutledge, C K; Charlock, T P; Mahan, J R

    2001-02-01

    Eppley's precision spectral pyranometer (PSP) is used in networks around the world to measure downwelling diffuse and global solar irradiance at the surface of the Earth. In recent years several studies have shown significant discrepancy between irradiances measured by pyranometers and those computed by atmospheric radiative transfer models. Pyranometer measurements have been questioned because observed diffuse irradiances sometimes are below theoretical minimum values for a pure molecular atmosphere, and at night the instruments often produce nonzero signals ranging between +5 and -10 W m(-2). We install thermistor sondes in the body of a PSP as well as on its inner dome to monitor the temperature gradients within the instrument, and we operate a pyrgeometer (PIR) instrument side by side with the PSP. We derive a relationship between the PSP output and thermal radiative exchange by the dome and the detector and a relationship between the PSP output and the PIR thermopile output (net-IR). We determine the true PSP offset by quickly capping the instrument at set time intervals. For a ventilated and shaded PSP, the thermal offset can reach -15 W m(-2) under clear skies, whereas it remains close to zero for low overcast clouds. We estimate the PSP thermal offset by two methods: (1) using the PSP temperatures and (2) using the PIR net-IR signal. The offset computed from the PSP temperatures yields a reliable estimate of the true offset (+/-1 W m(-2)). The offset computed from net-IR is consistent with the true offset at night and under overcast skies but predicts only part of the true range under clear skies.

  10. High precision determination of the gluon fusion Higgs boson cross-section at the LHC

    NASA Astrophysics Data System (ADS)

    Anastasiou, Charalampos; Duhr, Claude; Dulat, Falko; Furlan, Elisabetta; Gehrmann, Thomas; Herzog, Franz; Lazopoulos, Achilleas; Mistlberger, Bernhard

    2016-05-01

    We present the most precise value for the Higgs boson cross-section in the gluon-fusion production mode at the LHC. Our result is based on a perturbative expansion through N3LO in QCD, in an effective theory where the top-quark is assumed to be infinitely heavy, while all other Standard Model quarks are massless. We combine this result with QCD corrections to the cross-section where all finite quark-mass effects are included exactly through NLO. In addition, electroweak corrections and the first corrections in the inverse mass of the top-quark are incorporated at three loops. We also investigate the effects of threshold resummation, both in the traditional QCD framework and following a SCET approach, which resums a class of π2 contributions to all orders. We assess the uncertainty of the cross-section from missing higher-order corrections due to both perturbative QCD effects beyond N3LO and unknown mixed QCD-electroweak effects. In addition, we determine the sensitivity of the cross-section to the choice of parton distribution function (PDF) sets and to the parametric uncertainty in the strong coupling constant and quark masses. For a Higgs mass of m H = 125 GeV and an LHC center-of-mass energy of 13 TeV, our best prediction for the gluon fusion cross-section is σ =48.58{pb}_{-3.27pb}^{+2.22pb}(theory)± 1.56pb(3.20%)(PDF+{α}_s).

  11. Precision dosimetry for narrow photon beams used in radiosurgery-determination of Gamma Knife output factors.

    PubMed

    Mack, Andreas; Scheib, Stefan G; Major, Jörg; Gianolini, Stefano; Pazmandi, Gyorgy; Feist, Harald; Czempiel, Heinz; Kreiner, Hans-Jürg

    2002-09-01

    Treatment units for radiosurgery, like Leksell Gamma Knife and adapted, or dedicated, linear accelerators use small circular beams of ionizing radiation down to 4 mm in diameter at the isocenter. By cross-firing, these beams generate a high dose region at the isocenter together with steep dose gradients of up to 30% per mm. These units are used to treat small complex shaped lesions, often located close to critical structures within the brain, by superimposing several single high dose regions. In order to commission such treatment units for stereotactic irradiations, to carry out quality assurance and to simulate treatment conditions, as well as to collect input data for treatment planning, a precise dosimetric system is necessary. Commercially available radiation dosimeters only partially meet the requirements for narrow photon beams and small field sizes as used in stereotactic treatment modalities. The aim of this study was the experimental determination of the output factors for the field defining collimators used in Gamma Knife radiosurgery, in particular for the smallest, the 4 mm collimator helmet. For output factor measurements a pin point air ionization chamber, a liquid ionization chamber, a diode detector, a diamond detector, TLD microcubes and microrods, alanine pellets, and radiochromic films were used. In total, more than 1000 measurements were performed with these different detection systems, at the sites in Munich and Zurich. Our results show a resultant output factor for the 4 mm collimator helmet of 0.8741 +/- 0.0202, which is in good agreement with recently published results and demonstrates the feasibility of such measurements. The measured output factors for the 8 mm and 14 mm collimator helmets are 0.9578 +/- 0.0057 and 0.9870 +/- 0.0086, respectively. PMID:12349929

  12. The challenge of precise orbit determination for STSAT-2C using extremely sparse SLR data

    NASA Astrophysics Data System (ADS)

    Kim, Young-Rok; Park, Eunseo; Kucharski, Daniel; Lim, Hyung-Chul; Kim, Byoungsoo

    2016-03-01

    The Science and Technology Satellite (STSAT)-2C is the first Korean satellite equipped with a laser retro-reflector array for satellite laser ranging (SLR). SLR is the only on-board tracking source for precise orbit determination (POD) of STSAT-2C. However, POD for the STSAT-2C is a challenging issue, as the laser measurements of the satellite are extremely sparse, largely due to the inaccurate two-line element (TLE)-based orbit predictions used by the SLR tracking stations. In this study, POD for the STSAT-2C using extremely sparse SLR data is successfully implemented, and new laser-based orbit predictions are obtained. The NASA/GSFC GEODYN II software and seven-day arcs are used for the SLR data processing of two years of normal points from March 2013 to May 2015. To compensate for the extremely sparse laser tracking, the number of estimation parameters are minimized, and only the atmospheric drag coefficients are estimated with various intervals. The POD results show that the weighted root mean square (RMS) post-fit residuals are less than 10 m, and the 3D day boundaries vary from 30 m to 3 km. The average four-day orbit overlaps are less than 20/330/20 m for the radial/along-track/cross-track components. The quality of the new laser-based prediction is verified by SLR observations, and the SLR residuals show better results than those of previous TLE-based predictions. This study demonstrates that POD for the STSAT-2C can be successfully achieved against extreme sparseness of SLR data, and the results can deliver more accurate predictions.

  13. Using GPS and leveling data in local precise geoid determination and case study

    NASA Astrophysics Data System (ADS)

    Erol, B.; Çelik, R. N.; Erol, S.

    2003-04-01

    the fundamental mathematical equation; N=h-H. In the equation, "h" is the ellipsoidal height of a point P, "H" is the orthometric height of the same point and "N" is "geoid undulation" value. Normally, "H" orthometric height derived from leveling measurements but these measurements are tiring applications. So, while having a geoid model in the region as the essential part of geodetic infrastructure, number leveling measurements can be reduced from the procedure and by this way time and labor is saved. Geoid determination is modeling of the data in such a way that geoid height can be obtained digital or analog at a point whose horizontal position is known. Geoid models can be developed for local, regional or global regions. Using satellite techniques, especially GPS, in geodetic measurements are increased importance of geoid. Because geoid is a natural tie between high precision geodetic coordinates and coordinates which obtained from satellites. There are several geoid determination methods according to used data and models. GPS/Leveling method, which is also known as geometric method, is one of these methods. This method is appropriate for local precise geoid determination in respectively small areas. In this paper, it is going to be given information about GPS/Leveling geoid determination method and mathematical models, which are used in geoid determination with this method. And Izmir local geoid model will be presented as a case study. Izmir is one of the west metropolitan cities of Turkey and located near Aegean Sea. The topography is extremely rough in the region. There are two different geoid determination studies which were carried out in 1996 and 2001 in Izmir. Both models were accomplished according to GPS/Leveling method. Those two geoid models of Izmir Metropolitan region are investigated in here, the conflict of them were discussed. The relation between distribution of common reference points and differences of geoid undulation values, which are calculated

  14. The human milk metabolome reveals diverse oligosaccharide profiles.

    PubMed

    Smilowitz, Jennifer T; O'Sullivan, Aifric; Barile, Daniela; German, J Bruce; Lönnerdal, Bo; Slupsky, Carolyn M

    2013-11-01

    Breast milk delivers nutrition and protection to the developing infant. There has been considerable research on the high-molecular-weight milk components; however, low-molecular-weight metabolites have received less attention. To determine the effect of maternal phenotype and diet on the human milk metabolome, milk collected at day 90 postpartum from 52 healthy women was analyzed by using proton nuclear magnetic resonance spectroscopy. Sixty-five milk metabolites were quantified (mono-, di-, and oligosaccharides; amino acids and derivatives; energy metabolites; fatty acids and associated metabolites; vitamins, nucleotides, and derivatives; and others). The biological variation, represented as the percentage CV of each metabolite, varied widely (4-120%), with several metabolites having low variation (<20%), including lactose, urea, glutamate, myo-inositol, and creatinine. Principal components analysis identified 2 clear groups of participants who were differentiable on the basis of milk oligosaccharide concentration and who were classified as secretors or nonsecretors of fucosyltransferase 2 (FUT2) gene products according to the concentration of 2'-fucosyllactose, lactodifucotetraose, and lacto-N-fucopentaose I. Exploration of the interrelations between the milk sugars by using Spearman rank correlations revealed significant positive and negative associations, including positive correlations between fucose and products of the FUT2 gene and negative correlations between fucose and products of the fucosyltransferase 3 (FUT3) gene. The total concentration of milk oligosaccharides was conserved among participants (%CV = 18%), suggesting tight regulation of total oligosaccharide production; however, concentrations of specific oligosaccharides varied widely between participants (%CV = 30.4-84.3%). The variability in certain milk metabolites suggests possible roles in infant or infant gut microbial development. This trial was registered at clinicaltrials.gov as NCT01817127.

  15. Towards the GEOSAT Follow-On Precise Orbit Determination Goals of High Accuracy and Near-Real-Time Processing

    NASA Technical Reports Server (NTRS)

    Lemoine, Frank G.; Zelensky, Nikita P.; Chinn, Douglas S.; Beckley, Brian D.; Lillibridge, John L.

    2006-01-01

    The US Navy's GEOSAT Follow-On spacecraft (GFO) primary mission objective is to map the oceans using a radar altimeter. Satellite laser ranging data, especially in combination with altimeter crossover data, offer the only means of determining high-quality precise orbits. Two tuned gravity models, PGS7727 and PGS7777b, were created at NASA GSFC for GFO that reduce the predicted radial orbit through degree 70 to 13.7 and 10.0 mm. A macromodel was developed to model the nonconservative forces and the SLR spacecraft measurement offset was adjusted to remove a mean bias. Using these improved models, satellite-ranging data, altimeter crossover data, and Doppler data are used to compute both daily medium precision orbits with a latency of less than 24 hours. Final precise orbits are also computed using these tracking data and exported with a latency of three to four weeks to NOAA for use on the GFO Geophysical Data Records (GDR s). The estimated orbit precision of the daily orbits is between 10 and 20 cm, whereas the precise orbits have a precision of 5 cm.

  16. Analysis of Prebiotic Oligosaccharides

    NASA Astrophysics Data System (ADS)

    Sanz, M. L.; Ruiz-Matute, A. I.; Corzo, N.; Martínez-Castro, I.

    Carbohydrates and more specifically prebiotics, are complex mixtures of isomers with different degrees of polymerization (DP), monosaccharide units and/or glycosidic linkages. Many efforts are focused on the search for new products and the determination of their biological activity. However, the study of their chemical structure is fundamental to both acquire a basic knowledge of the carbohydrate and to increase the understanding of the mechanisms for their metabolic effect.

  17. A Precise, Simple, and Low-Cost Experiment to Determine the Isobaric Expansion Coefficient for Physical Chemistry Students

    ERIC Educational Resources Information Center

    Pe´rez, Eduardo

    2015-01-01

    The procedure of a physical chemistry experiment for university students must be designed in a way that the accuracy and precision of the measurements is properly maintained. However, in many cases, that requires costly and sophisticated equipment not readily available in developing countries. A simple, low-cost experiment to determine isobaric…

  18. Purity of potassium hydrogen phthalate, determination with precision coulometric and volumetric titration--a comparison.

    PubMed

    Recknagel, Sebastian; Breitenbach, Martin; Pautz, Joachim; Lück, Detlef

    2007-09-19

    The mass fraction of potassium hydrogen phthalate (KHP) from a specific batch was certified as an acidimetric standard. Two different analytical methods on a metrological level were used to carry out certification analysis: precision constant current coulometric and volumetric titration with NaOH. It could be shown that with a commercial automatic titration system in combination with a reliable software for the end-point detection it is possible to produce equivalent results with the same accuracy in comparison to a definite method handled by a fundamental apparatus for traceable precision coulometry. Prerequisite for titrations are that a high number of single measurement are applied which are calibrated with a high precision certified reference material. PMID:17870288

  19. Automated glycan assembly of xyloglucan oligosaccharides.

    PubMed

    Dallabernardina, Pietro; Schuhmacher, Frank; Seeberger, Peter H; Pfrengle, Fabian

    2016-01-01

    We report the automated glycan assembly of oligosaccharide fragments related to the hemicellulose xyloglucan (XG). Iterative addition of monosaccharide and disaccharide building blocks to a solid support provided seven cellulose and xyloglucan fragments including XXGG- and XXXG-type oligosaccharides. PMID:26553949

  20. Hydrophilic interaction liquid chromatography for the separation, purification, and quantification of raffinose family oligosaccharides from Lycopus lucidus Turcz.

    PubMed

    Liang, Tu; Fu, Qing; Li, Fangbing; Zhou, Wei; Xin, Huaxia; Wang, Hui; Jin, Yu; Liang, Xinmiao

    2015-08-01

    A systematic strategy based on hydrophilic interaction liquid chromatography was developed for the separation, purification and quantification of raffinose family oligosaccharides from Lycopus lucidus Turcz. Methods with enough hydrophilicity and selectivity were utilized to resolve the problems encountered in the separation of oligosaccharides such as low retention, low resolution and poor solubility. The raffinose family oligosaccharides in L. lucidus Turcz. were isolated using solid-phase extraction followed by hydrophilic interaction liquid chromatography at semi-preparative scale to obtain standards of stachyose, verbascose and ajugose. Utilizing the obtained oligosaccharides as standards, a quantitative determination method was developed, validated and applied for the content determination of raffinose family oligosaccharides both in the aerial and root parts of L. lucidus Turcz. There were no oligosaccharides in the aerial parts, while in the root parts, the total content was 686.5 mg/g with the average distribution: raffinose 66.5 mg/g, stachyose 289.0 mg/g, verbascose 212.4 mg/g, and ajugose 118.6 mg/g. The result provided the potential of roots of L. lucidus Turcz. as new raffinose family oligosaccharides sources for functional food. Moreover, since the present systematic strategy is efficient, sensitive and robust, separation, purification and quantification of oligosaccharides by hydrophilic interaction liquid chromatography seems to be possible. PMID:26011699

  1. Precise orbit determination for quad-constellation satellites at Wuhan University: strategy, result validation, and comparison

    NASA Astrophysics Data System (ADS)

    Guo, Jing; Xu, Xiaolong; Zhao, Qile; Liu, Jingnan

    2016-02-01

    This contribution summarizes the strategy used by Wuhan University (WHU) to determine precise orbit and clock products for Multi-GNSS Experiment (MGEX) of the International GNSS Service (IGS). In particular, the satellite attitude, phase center corrections, solar radiation pressure model developed and used for BDS satellites are addressed. In addition, this contribution analyzes the orbit and clock quality of the quad-constellation products from MGEX Analysis Centers (ACs) for a common time period of 1 year (2014). With IGS final GPS and GLONASS products as the reference, Multi-GNSS products of WHU (indicated by WUM) show the best agreement among these products from all MGEX ACs in both accuracy and stability. 3D Day Boundary Discontinuities (DBDs) range from 8 to 27 cm for Galileo-IOV satellites among all ACs' products, whereas WUM ones are the largest (about 26.2 cm). Among three types of BDS satellites, MEOs show the smallest DBDs from 10 to 27 cm, whereas the DBDs for all ACs products are at decimeter to meter level for GEOs and one to three decimeter for IGSOs, respectively. As to the satellite laser ranging (SLR) validation for Galileo-IOV satellites, the accuracy evaluated by SLR residuals is at the one decimeter level with the well-known systematic bias of about -5 cm for all ACs. For BDS satellites, the accuracy could reach decimeter level, one decimeter level, and centimeter level for GEOs, IGSOs, and MEOs, respectively. However, there is a noticeable bias in GEO SLR residuals. In addition, systematic errors dependent on orbit angle related to mismodeled solar radiation pressure (SRP) are present for BDS GEOs and IGSOs. The results of Multi-GNSS combined kinematic PPP demonstrate that the best accuracy of position and fastest convergence speed have been achieved using WUM products, particularly in the Up direction. Furthermore, the accuracy of static BDS only PPP degrades when the BDS IGSO and MEO satellites switches to orbit-normal orientation

  2. [Effect of ligand concentration on the precision of determining the parameters of ligand-receptor interaction by serial dilution methods].

    PubMed

    Bobrovnik, S A

    2004-01-01

    Earlier we suggested the method of serial dilution, which allows one to determine the parameters of ligand-receptor interaction even if the reactants are in a mixture and their concentrations are unknown. The method is especially useful if the liability of studied receptor does not allow its separation from corresponding ligand. The important prerequisite of the method's precision is that the concentration of the ligand should be sufficiently high comparing to the concentration of the receptor. In the present paper it was demonstrated that the method allows one to obtain sufficiently good precision even in the case when the concentration of the ligand is only one tenth of the receptor concentration.

  3. Structure, oligosaccharide structures, and posttranslationally modified sites of the nicotinic acetylcholine receptor.

    PubMed Central

    Poulter, L; Earnest, J P; Stroud, R M; Burlingame, A L

    1989-01-01

    Using mass spectrometry, we have examined the transmembrane topography of the nicotinic acetylcholine receptor, a five-subunit glycosylated protein complex that forms a gated ion channel in the neuromuscular junction. The primary sequences of the four polypeptide chains making up the acetylcholine receptor from Torpedo californica contain many possible sites for glycosylation or phosphorylation. We have used liquid secondary ion mass spectrometry to identify posttranslationally modified residues and to determine the intact oligosaccharide structures of the carbohydrate present on the acetylcholine receptor. Asparagine-143 of the alpha subunit (in consensus numbering) is shown to be glycosylated with high-mannose oligosaccharide. Asparagine-453 of the gamma subunit is not glycosylated, a fact that bears on the question of the orientations of putative transmembranous helices M3, MA, and M4. The structures of the six major acetylcholine receptor oligosaccharides are determined: the major components (70%) are of the high-mannose type, with bi-, tri-, and tetraantennary complex oligosaccharides making up approximately equal to 22 mol% of the total carbohydrate. This application of a multichannel array detector mass spectrometer provided a breakthrough in sensitivity that allowed us to identify the site of attachment of, and the sequence of, oligosaccharides on a 300-kDa membrane protein from only 5 pmol of the isolated oligosaccharide. Images PMID:2771948

  4. Preparation of κ-carra-oligosaccharides with microwave assisted acid hydrolysis method

    NASA Astrophysics Data System (ADS)

    Li, Guangsheng; Zhao, Xia; Lv, Youjing; Li, Miaomiao; Yu, Guangli

    2015-04-01

    A rapid method of microwave assisted acid hydrolysis was established to prepare κ-carra-oligosaccharides. The optimal hydrolysis condition was determined by an orthogonal test. The degree of polymerization (DP) of oligosaccharides was detected by high performance thin layer chromatography (HPTLC) and polyacrylamide gel electrophoresis (PAGE). Considering the results of HPTLC and PAGE, the optimum condition of microwave assisted acid hydrolysis was determined. The concentration of κ-carrageenan was 5 mg mL-1; the reaction solution was adjusted to pH 3 with diluted hydrochloric acid; the solution was hydrolyzed under microwave irradiation at 100 for 15 °C min. Oligosaccharides were separated by a Superdex 30 column (2.6 cm × 90 cm) using AKTA Purifier UPC100 and detected with an online refractive index detector. Each fraction was characterized by electrospray ionization mass spectrometry (ESI-MS). The data showed that odd-numbered κ-carra-oligosaccharides with DP ranging from 3 to 21 could be obtained with this method, and the structures of the oligosaccharides were consistent with those obtained by traditional mild acid hydrolysis. The new method was more convenient, efficient and environment-friendly than traditional mild acid hydrolysis. Our results provided a useful reference for the preparation of oligosaccharides from other polysaccharides.

  5. Piping inspection instrument carriage with precise and repeatable position control and location determination

    DOEpatents

    Hapstack, Mark; Talarek, Ted R.; Zollinger, W. Thor; Heckendorn, II, Frank M.; Park, Larry R.

    1994-01-01

    An instrument carriage for inspection of piping comprises front and rear leg assemblies for engaging the interior of the piping and supporting and centering the carriage therein, and an instrumentation arm carried by a shaft system running from the front to rear leg assemblies. The shaft system has a screw shaft for moving the arm axially and a spline gear for moving the arm azimuthally. The arm has a pair of air cylinders that raise and lower a plate in the radial direction. On the plate are probes including an eddy current probe and an ultrasonic testing probe. The ultrasonic testing probe is capable of spinning 360.degree. about its axis. The instrument carriage uses servo motors and pressurized air cylinders for precise actuation of instrument components and precise, repeatable actuation of position control mechanisms.

  6. Piping inspection instrument carriage with precise and repeatable position control and location determination

    DOEpatents

    Hapstack, M.; Talarek, T.R.; Zollinger, W.T.; Heckendorn, F.M. II; Park, L.R.

    1994-02-15

    An instrument carriage for inspection of piping comprises front and rear leg assemblies for engaging the interior of the piping and supporting and centering the carriage therein, and an instrumentation arm carried by a shaft system running from the front to rear leg assemblies. The shaft system has a screw shaft for moving the arm axially and a spline gear for moving the arm azimuthally. The arm has a pair of air cylinders that raise and lower a plate in the radial direction. On the plate are probes including an eddy current probe and an ultrasonic testing probe. The ultrasonic testing probe is capable of spinning 360[degree] about its axis. The instrument carriage uses servo motors and pressurized air cylinders for precise actuation of instrument components and precise, repeatable actuation of position control mechanisms. 8 figures.

  7. Cross spectral analysis to determine the resolution and precision of Jimsphere and windsonde wind measurements

    NASA Technical Reports Server (NTRS)

    Smith, Steve A.

    1989-01-01

    Spectral analysis of wind profiles measured by two systems, one consisting of Jimsphere balloons tracked by two precision tracking radars and the other of the Windsonde and a Meteorological Sounding System (MSS) tracker, was carried out to assess the effective resolution and precision of these two systems. Results obtained from the cross-spectral analysis of seven nearly simultaneous profiles from Jimsphere and MSS-Windsonde releases obtained in March and April, 1985 indicate that the coherence between the Jimsphere and Windsonde profiles was not as strong as between two independent radars tracking the same Jimsphere. The effective vertical resolution for the Jimsphere measurements was 150-300 m, while that for the Windsonde was above 500 m. The amplitude of the incoherent noise in the Jimsphere measurements was approximately 0.25 m/s, while that of the MSS-tracked Windsonde was about 1.2 m/s.

  8. Near ultraviolet photolysis of C2H2: A precise determination of D0(HCC - H)

    NASA Astrophysics Data System (ADS)

    Mordaunt, David H.; Ashfold, Michael N. R.

    1994-08-01

    The near ultraviolet photolysis of jet-cooled acetylene molecules has been further investigated using the technique of H atom photofragment translational spectroscopy. Analysis of the rotational structure evident in the total fragment kinetic energy spectrum yields a precise value for the C-H bond dissociation energy: D0(HCC-H)=46 074±8 cm-1 (551.2±0.1kJ mol-1).

  9. The ability of bifidobacteria to degrade arabinoxylan oligosaccharide constituents and derived oligosaccharides is strain dependent.

    PubMed

    Rivière, Audrey; Moens, Frédéric; Selak, Marija; Maes, Dominique; Weckx, Stefan; De Vuyst, Luc

    2014-01-01

    Arabinoxylan oligosaccharides (AXOS) are prebiotic carbohydrates with promising health-promoting properties that stimulate the activity of specific colon bacteria, in particular bifidobacteria. However, the mechanisms by which bifidobacterial strains break down these compounds in the colon is still unknown. This study investigates AXOS consumption of a large number of bifidobacterial strains (36), belonging to 11 different species, systematically. To determine their degradation mechanisms, all strains were grown on a mixture of arabinose and xylose, xylo-oligosaccharides, and complex AXOS molecules as the sole added energy sources. Based on principal component and cluster analyses of their different arabinose substituent and/or xylose backbone consumption patterns, five clusters that were species independent could be distinguished among the bifidobacterial strains tested. In parallel, the strains were screened for the presence of genes encoding several putative AXOS-degrading enzymes, but no clear-cut correlation could be made with the different degradation mechanisms. The intra- and interspecies differences in the consumption patterns of AXOS indicate that bifidobacterial strains could avoid competition among each other or even could cooperate jointly to degrade these complex prebiotics. The knowledge gained on the AXOS degradation mechanisms in bifidobacteria can be of importance in the rational design of prebiotics with tailor-made composition and thus increased specificity in the colon.

  10. The Ability of Bifidobacteria To Degrade Arabinoxylan Oligosaccharide Constituents and Derived Oligosaccharides Is Strain Dependent

    PubMed Central

    Rivière, Audrey; Moens, Frédéric; Selak, Marija; Maes, Dominique; Weckx, Stefan

    2014-01-01

    Arabinoxylan oligosaccharides (AXOS) are prebiotic carbohydrates with promising health-promoting properties that stimulate the activity of specific colon bacteria, in particular bifidobacteria. However, the mechanisms by which bifidobacterial strains break down these compounds in the colon is still unknown. This study investigates AXOS consumption of a large number of bifidobacterial strains (36), belonging to 11 different species, systematically. To determine their degradation mechanisms, all strains were grown on a mixture of arabinose and xylose, xylo-oligosaccharides, and complex AXOS molecules as the sole added energy sources. Based on principal component and cluster analyses of their different arabinose substituent and/or xylose backbone consumption patterns, five clusters that were species independent could be distinguished among the bifidobacterial strains tested. In parallel, the strains were screened for the presence of genes encoding several putative AXOS-degrading enzymes, but no clear-cut correlation could be made with the different degradation mechanisms. The intra- and interspecies differences in the consumption patterns of AXOS indicate that bifidobacterial strains could avoid competition among each other or even could cooperate jointly to degrade these complex prebiotics. The knowledge gained on the AXOS degradation mechanisms in bifidobacteria can be of importance in the rational design of prebiotics with tailor-made composition and thus increased specificity in the colon. PMID:24141124

  11. Nature and biosynthesis of galacto-oligosaccharides related to oligosaccharides in human breast milk

    PubMed Central

    Intanon, Montira; Arreola, Sheryl Lozel; Pham, Ngoc Hung; Kneifel, Wolfgang; Haltrich, Dietmar; Nguyen, Thu-Ha

    2014-01-01

    Human milk oligosaccharides (HMO) are prominent among the functional components of human breast milk. While HMO have potential applications in both infants and adults, this potential is limited by the difficulties in manufacturing these complex structures. Consequently, functional alternatives such as galacto-oligosaccharides are under investigation, and nowadays, infant formulae are supplemented with galacto-oligosaccharides to mimic the biological effects of HMO. Recently, approaches toward the production of defined human milk oligosaccharide structures using microbial, fermentative methods employing single, appropriately engineered microorganisms were introduced. Furthermore, galactose-containing hetero-oligosaccharides have attracted an increasing amount of attention because they are structurally more closely related to HMO. The synthesis of these novel oligosaccharides, which resemble the core of HMO, is of great interest for applications in the food industry. PMID:24571717

  12. An evaluation of the precision of fin ray, otolith, and scale age determinations for brook trout

    USGS Publications Warehouse

    Stolarski, J.T.; Hartman, K.J.

    2008-01-01

    The ages of brook trout Salvelinus fontinalis are typically estimated using scales despite a lack of research documenting the effectiveness of this technique. The use of scales is often preferred because it is nonlethal and is believed to require less effort than alternative methods. To evaluate the relative effectiveness of different age estimation methodologies for brook trout, we measured the precision and processing times of scale, sagittal otolith, and pectoral fin ray age estimation techniques. Three independent readers, age bias plots, coefficients of variation (CV = 100 x SD/mean), and percent agreement (PA) were used to measure within-reader, among-structure bias and within-structure, among-reader precision. Bias was generally minimal; however, the age estimates derived from scales tended to be lower than those derived from otoliths within older (age > 2) cohorts. Otolith, fin ray, and scale age estimates were within 1 year of each other for 95% of the comparisons. The measures of precision for scales (CV = 6.59; PA = 82.30) and otoliths (CV = 7.45; PA = 81.48) suggest higher agreement between these structures than with fin rays (CV = 11.30; PA = 65.84). The mean per-sample processing times were lower for scale (13.88 min) and otolith techniques (12.23 min) than for fin ray techniques (22.68 min). The comparable processing times of scales and otoliths contradict popular belief and are probably a result of the high proportion of regenerated scales within samples and the ability to infer age from whole (as opposed to sectioned) otoliths. This research suggests that while scales produce age estimates rivaling those of otoliths for younger (age > 3) cohorts, they may be biased within older cohorts and therefore should be used with caution. ?? Copyright by the American Fisheries Society 2008.

  13. Precise Determination of the Neutron Magnetic Form Factor to Higher Q{sup 2}

    SciTech Connect

    William K. Brooks; Jeffery D. Lachniet

    2004-10-01

    The neutron elastic magnetic form factor G{sub M}{sup n} has been extracted from quasielastic scattering from deuterium in the CEBAF Large Acceptance Spectrometer, CLAS. The kinematic coverage of the measurement is continuous over a broad range, extending from below 1 GeV{sup 2} to nearly 5 GeV{sup 2} in four-momentum transfer squared. High precision is achieved by employing a ratio technique in which most uncertainties cancel, and by a simultaneous in-situ calibration of the neutron detection efficiency, the largest correction to the data. Preliminary results are shown with statistical errors only.

  14. Lactodifucotetraose, a human milk oligosaccharide, attenuates platelet function and inflammatory cytokine release.

    PubMed

    Newburg, David S; Tanritanir, Ayse C; Chakrabarti, Subrata

    2016-07-01

    Human milk strongly quenches inflammatory processes in vitro, and breastfed infants have lower incidence of inflammatory diseases than those fed artificially. Platelets from neonates, in contrast to those from adults, are less responsive to platelet agonists such as collagen, thrombin, ADP, and epinephrine. Breastfed infants absorb oligosaccharides intact from the human milk in their gut to the circulation. This study was to determine whether these oligosaccharides can attenuate platelet function and platelet secretion of pro-inflammatory proteins, and to identify the active component. The natural mixture of oligosaccharides from human milk and pure individual human milk oligosaccharides were tested for their ability to modulate responses of platelets isolated from human blood following exposure to thrombin, ADP, and collagen. Human milk and the natural mixture of human milk oligosaccharides inhibited platelet release of inflammatory proteins. Of the purified human milk oligosaccharides tested, only lactodifucotetraose (LDFT) significantly inhibited thrombin induced release of the pro-inflammatory proteins RANTES and sCD40L. LDFT also inhibited platelet adhesion to a collagen-coated surface, as well as platelet aggregation induced by ADP or collagen. These data indicate that LDFT may help modulate hemostasis by suppressing platelet-induced inflammatory processes in breastfed infants. This activity suggests further study of LDFT for its potential as a therapeutic agent in infants and adults.

  15. A Study into the Method of Precise Orbit Determination of a HEO Orbiter by GPS and Accelerometer

    NASA Technical Reports Server (NTRS)

    Ikenaga, Toshinori; Hashida, Yoshi; Unwin, Martin

    2007-01-01

    In the present day, orbit determination by Global Positioning System (GPS) is not unusual. Especially for low-cost small satellites, position determination by an on-board GPS receiver provides a cheap, reliable and precise method. However, the original purpose of GPS is for ground users, so the transmissions from all of the GPS satellites are directed toward the Earth s surface. Hence there are some restrictions for users above the GPS constellation to detect those signals. On the other hand, a desire for precise orbit determination for users in orbits higher than GPS constellation exists. For example, the next Japanese Very Long Baseline Interferometry (VLBI) mission "ASTRO-G" is trying to determine its orbit in an accuracy of a few centimeters at apogee. The use of GPS is essential for such ultra accurate orbit determination. This study aims to construct a method for precise orbit determination for such high orbit users, especially in High Elliptical Orbits (HEOs). There are several approaches for this objective. In this study, a hybrid method with GPS and an accelerometer is chosen. Basically, while the position cannot be determined by an on-board GPS receiver or other Range and Range Rate (RARR) method, all we can do to estimate the user satellite s position is to propagate the orbit along with the force model, which is not perfectly correct. However if it has an accelerometer (ACC), the coefficients of the air drag and the solar radiation pressure applied to the user satellite can be updated and then the propagation along with the "updated" force model can improve the fitting accuracy of the user satellite s orbit. In this study, it is assumed to use an accelerometer available in the present market. The effects by a bias error of an accelerometer will also be discussed in this paper.

  16. Modeling radiation forces acting on TOPEX/Poseidon for precision orbit determination

    NASA Astrophysics Data System (ADS)

    Marshall, J. A.; Luthcke, S. B.; Antreasian, P. G.; Rosborough, G. W.

    1992-06-01

    Geodetic satellites such as GEOSAT, SPOT, ERS-1, and TOPEX/Poseidon require accurate orbital computations to support the scientific data they collect. Until recently, gravity field mismodeling was the major source of error in precise orbit definition. However, albedo and infrared re-radiation, and spacecraft thermal imbalances produce in combination no more than a 6-cm radial root-mean-square (RMS) error over a 10-day period. This requires the development of nonconservative force models that take the satellite's complex geometry, attitude, and surface properties into account. For TOPEX/Poseidon, a 'box-wing' satellite form was investigated that models the satellite as a combination of flat plates arranged in a box shape with a connected solar array. The nonconservative forces acting on each of the eight surfaces are computed independently, yielding vector accelerations which are summed to compute the total aggregate effect on the satellite center-of-mass. In order to test the validity of this concept, 'micro-models' based on finite element analysis of TOPEX/Poseidon were used to generate acceleration histories in a wide variety of orbit orientations. These profiles are then compared to the box-wing model. The results of these simulations and their implication on the ability to precisely model the TOPEX/Poseidon orbit are discussed.

  17. Modeling radiation forces acting on TOPEX/Poseidon for precision orbit determination

    NASA Technical Reports Server (NTRS)

    Marshall, J. A.; Luthcke, S. B.; Antreasian, P. G.; Rosborough, G. W.

    1992-01-01

    Geodetic satellites such as GEOSAT, SPOT, ERS-1, and TOPEX/Poseidon require accurate orbital computations to support the scientific data they collect. Until recently, gravity field mismodeling was the major source of error in precise orbit definition. However, albedo and infrared re-radiation, and spacecraft thermal imbalances produce in combination no more than a 6-cm radial root-mean-square (RMS) error over a 10-day period. This requires the development of nonconservative force models that take the satellite's complex geometry, attitude, and surface properties into account. For TOPEX/Poseidon, a 'box-wing' satellite form was investigated that models the satellite as a combination of flat plates arranged in a box shape with a connected solar array. The nonconservative forces acting on each of the eight surfaces are computed independently, yielding vector accelerations which are summed to compute the total aggregate effect on the satellite center-of-mass. In order to test the validity of this concept, 'micro-models' based on finite element analysis of TOPEX/Poseidon were used to generate acceleration histories in a wide variety of orbit orientations. These profiles are then compared to the box-wing model. The results of these simulations and their implication on the ability to precisely model the TOPEX/Poseidon orbit are discussed.

  18. Precision Determination of Atmospheric Extinction at Optical and Near IR Wavelengths

    SciTech Connect

    Burke, David L.; Axelrod, T.; Blondin, Stephane; Claver, Chuck; Ivezic, Zeljko; Jones, Lynne; Saha, Abhijit; Smith, Allyn; Smith, R.Chris; Stubbs, Christopher W.; /Harvard-Smithsonian Ctr. Astrophys.

    2011-08-24

    The science goals for future ground-based all-sky surveys, such as the Dark Energy Survey, PanSTARRS, and the Large Synoptic Survey Telescope, require calibration of broadband photometry that is stable in time and uniform over the sky to precisions of a per cent or better, and absolute calibration of color measurements that are similarly accurate. This performance will need to be achieved with measurements made from multiple images taken over the course of many years, and these surveys will observe in less than ideal conditions. This paper describes a technique to implement a new strategy to directly measure variations of atmospheric transmittance at optical wavelengths and application of these measurements to calibration of ground-based observations. This strategy makes use of measurements of the spectra of a small catalog of bright 'probe' stars as they progress across the sky and back-light the atmosphere. The signatures of optical absorption by different atmospheric constituents are recognized in these spectra by their characteristic dependences on wavelength and airmass. State-of-the-art models of atmospheric radiation transport and modern codes are used to accurately compute atmospheric extinction over a wide range of observing conditions. We present results of an observing campaign that demonstrate that correction for extinction due to molecular constituents and aerosols can be done with precisions of a few millimagnitudes with this technique.

  19. Measurement of the positive muon lifetime and determination of the Fermi constant to part-per-million precision.

    PubMed

    Webber, D M; Tishchenko, V; Peng, Q; Battu, S; Carey, R M; Chitwood, D B; Crnkovic, J; Debevec, P T; Dhamija, S; Earle, W; Gafarov, A; Giovanetti, K; Gorringe, T P; Gray, F E; Hartwig, Z; Hertzog, D W; Johnson, B; Kammel, P; Kiburg, B; Kizilgul, S; Kunkle, J; Lauss, B; Logashenko, I; Lynch, K R; McNabb, R; Miller, J P; Mulhauser, F; Onderwater, C J G; Phillips, J; Rath, S; Roberts, B L; Winter, P; Wolfe, B

    2011-01-28

    We report a measurement of the positive muon lifetime to a precision of 1.0 ppm; it is the most precise particle lifetime ever measured. The experiment used a time-structured, low-energy muon beam and a segmented plastic scintillator array to record more than 2×10(12) decays. Two different stopping target configurations were employed in independent data-taking periods. The combined results give τ(μ(+)) (MuLan)=2 196 980.3(2.2)  ps, more than 15 times as precise as any previous experiment. The muon lifetime gives the most precise value for the Fermi constant: G(F) (MuLan)=1.166 378 8(7)×10(-5)  GeV(-2) (0.6 ppm). It is also used to extract the μ(-)p singlet capture rate, which determines the proton's weak induced pseudoscalar coupling g(P).

  20. Factors determining the precision of the correlated firing generated by a monosynaptic connection in the cat visual pathway

    PubMed Central

    Veredas, Francisco J; Vico, Francisco J; Alonso, Jose-Manuel

    2005-01-01

    Across the visual pathway, strong monosynaptic connections generate a precise correlated firing between presynaptic and postsynaptic neurons. The precision of this correlated firing is not the same within thalamus and visual cortex. While retinogeniculate connections generate a very narrow peak in the correlogram (peak width < 1 ms), the peaks generated by geniculocortical and corticocortical connections have usually a time course of several milliseconds. Several factors could explain these differences in timing precision such as the amplitude of the monosynaptic EPSP (excitatory postsynaptic potential), its time course or the contribution of polysynaptic inputs. While it is difficult to isolate the contribution of each factor in physiological experiments, a first approximation can be done in modelling studies. Here, we simulated two monosynaptically connected neurons to measure changes in their correlated firing as we independently modified different parameters of the connection. Our results suggest that the precision of the correlated firing generated by strong monosynaptic connections is mostly determined by the EPSP time course of the connection and much less by other factors. In addition, we show that a polysynaptic pathway is unlikely to emulate the correlated firing generated by a monosynaptic connection unless it generates EPSPs with very small latency jitter. PMID:16020458

  1. Jason-1 Precise Orbit Determination from GPS Tracking: Method, Performance and Calibration of the Lc Phase Center Offset

    NASA Technical Reports Server (NTRS)

    Luthcke, Scott B.

    2002-01-01

    Jason-1, launched on December 7, 2001, is continuing the time series of centimeter level Ocean topography observations as the follow-on to the highly successful TOPEX/POSEIDON (T/P) radar altimeter satellite. The precision orbit determination (POD) is a critical component to meeting the Ocean topography goals of the mission. T/P has demonstrated that the time variation of Ocean topography can be determined with an accuracy of a few centimeters, thanks to the availability of highly accurate orbits based primarily on SLR+DORIS tracking. The Jason-1 mission is intended to continue measurement of the Ocean surface with the same, if not better accuracy.

  2. The use of laser altimetry data in Chang'E-1 precision orbit determination

    NASA Astrophysics Data System (ADS)

    Chang, Sheng-Qi; Huang, Yong; Li, Pei-Jia; Hu, Xiao-Gong; Fan, Min

    2016-09-01

    Accurate altimetric measurement not only can be applied to the calculation of a topography model but also can be used to improve the quality of the orbit reconstruction in the form of crossovers. Altimetry data from the Chang'E-1 (CE-1) laser altimeter are analyzed in this paper. The differences between the crossover constraint equation in the form of height discrepancies and in the form of minimum distances are mainly discussed. The results demonstrate that the crossover constraint equation in the form of minimum distances improves the CE-1 orbit precision. The overlap orbit performance has increased ∼ 30% compared to the orbit using only tracking data. External assessment using the topography model also shows orbit improvement. The results will be helpful for recomputing ephemeris and improving the CE-1 topography model.

  3. The Coyote Universe. I. Precision Determination of the Nonlinear Matter Power Spectrum

    NASA Astrophysics Data System (ADS)

    Heitmann, Katrin; White, Martin; Wagner, Christian; Habib, Salman; Higdon, David

    2010-05-01

    Near-future cosmological observations targeted at investigations of dark energy pose stringent requirements on the accuracy of theoretical predictions for the nonlinear clustering of matter. Currently, N-body simulations comprise the only viable approach to this problem. In this paper, we study various sources of computational error and methods to control them. By applying our methodology to a large suite of cosmological simulations we show that results for the (gravity-only) nonlinear matter power spectrum can be obtained at 1% accuracy out to k ~ 1 h Mpc-1. The key components of these high accuracy simulations are precise initial conditions, very large simulation volumes, sufficient mass resolution, and accurate time stepping. This paper is the first in a series of three; the final aim is a high-accuracy prediction scheme for the nonlinear matter power spectrum that improves current fitting formulae by an order of magnitude.

  4. THE COYOTE UNIVERSE. I. PRECISION DETERMINATION OF THE NONLINEAR MATTER POWER SPECTRUM

    SciTech Connect

    Heitmann, Katrin; White, Martin; Wagner, Christian; Habib, Salman; Higdon, David

    2010-05-20

    Near-future cosmological observations targeted at investigations of dark energy pose stringent requirements on the accuracy of theoretical predictions for the nonlinear clustering of matter. Currently, N-body simulations comprise the only viable approach to this problem. In this paper, we study various sources of computational error and methods to control them. By applying our methodology to a large suite of cosmological simulations we show that results for the (gravity-only) nonlinear matter power spectrum can be obtained at 1% accuracy out to k {approx} 1 h Mpc{sup -1}. The key components of these high accuracy simulations are precise initial conditions, very large simulation volumes, sufficient mass resolution, and accurate time stepping. This paper is the first in a series of three; the final aim is a high-accuracy prediction scheme for the nonlinear matter power spectrum that improves current fitting formulae by an order of magnitude.

  5. Determination of Personalized IOL-Constants for the Haigis Formula under Consideration of Measurement Precision

    PubMed Central

    Leydolt, Christina; Menapace, Rupert; Eppig, Timo; Langenbucher, Achim

    2016-01-01

    The capabilities of a weighted least squares approach for the optimization of the intraocular lens (IOL) constants for the Haigis formula are studied in comparison to an ordinary least squares approach. The weights are set to the inverse variances of the effective optical anterior chamber depth. The effect of random measurement noise is simulated 100000 times using data from N = 69 cataract patients and the measurement uncertainty of two different biometers. A second, independent data set (N = 33) is used to show the differences that can be expected between both methods. The weighted least squares formalism reduces the effect of measurement error on the final constants. In more than 64% it will result in a better approximation, if the measurement errors are estimated correctly. The IOL constants can be calculated with higher precision using the weighted least squares method. PMID:27391100

  6. Capillary Electrophoresis of Mono- and Oligosaccharides.

    PubMed

    Toppazzini, Mila; Coslovi, Anna; Rossi, Marco; Flamigni, Anna; Baiutti, Edi; Campa, Cristiana

    2016-01-01

    This chapter reports an overview of the recent advances in the analysis of mono- and oligosaccharides by capillary electrophoresis (CE); furthermore, relevant reviews and research articles recently published in the field are tabulated. Additionally, pretreatments and procedures applied to uncharged and acidic carbohydrates (i.e., monosaccharides and lower oligosaccharides carrying carboxylate, sulfate, or phosphate groups) are described.Representative examples of such procedures are reported in detail, upon describing robust methodologies for the study of (1) neutral oligosaccharides derivatized by reductive amination and by formation of glycosylamines; (2) sialic acid derivatized with 2-aminoacridone, released from human serum immunoglobulin G; (3) anomeric couples of neutral glycosides separated using borate-based buffers; (4) unsaturated, underivatized oligosaccharides from lyase-treated alginate. PMID:27645743

  7. New Method for a Continuous Determination of the Spin Tune in Storage Rings and Implications for Precision Experiments

    NASA Astrophysics Data System (ADS)

    Eversmann, D.; Hejny, V.; Hinder, F.; Kacharava, A.; Pretz, J.; Rathmann, F.; Rosenthal, M.; Trinkel, F.; Andrianov, S.; Augustyniak, W.; Bagdasarian, Z.; Bai, M.; Bernreuther, W.; Bertelli, S.; Berz, M.; Bsaisou, J.; Chekmenev, S.; Chiladze, D.; Ciullo, G.; Contalbrigo, M.; de Vries, J.; Dymov, S.; Engels, R.; Esser, F. M.; Felden, O.; Gaisser, M.; Gebel, R.; Glückler, H.; Goldenbaum, F.; Grigoryev, K.; Grzonka, D.; Guidoboni, G.; Hanhart, C.; Heberling, D.; Hempelmann, N.; Hetzel, J.; Hipple, R.; Hölscher, D.; Ivanov, A.; Kamerdzhiev, V.; Kamys, B.; Keshelashvili, I.; Khoukaz, A.; Koop, I.; Krause, H.-J.; Krewald, S.; Kulikov, A.; Lehrach, A.; Lenisa, P.; Lomidze, N.; Lorentz, B.; Maanen, P.; Macharashvili, G.; Magiera, A.; Maier, R.; Makino, K.; Mariański, B.; Mchedlishvili, D.; Meißner, Ulf-G.; Mey, S.; Nass, A.; Natour, G.; Nikolaev, N.; Nioradze, M.; Nogga, A.; Nowakowski, K.; Pesce, A.; Prasuhn, D.; Ritman, J.; Rudy, Z.; Saleev, A.; Semertzidis, Y.; Senichev, Y.; Shmakova, V.; Silenko, A.; Slim, J.; Soltner, H.; Stahl, A.; Stassen, R.; Statera, M.; Stephenson, E.; Stockhorst, H.; Straatmann, H.; Ströher, H.; Tabidze, M.; Talman, R.; Thörngren Engblom, P.; Trzciński, A.; Uzikov, Yu.; Valdau, Yu.; Valetov, E.; Vassiliev, A.; Weidemann, C.; Wilkin, C.; Wirzba, A.; Wrońska, A.; Wüstner, P.; Zakrzewska, M.; Zuprański, P.; Zyuzin, D.; JEDI Collaboration

    2015-08-01

    A new method to determine the spin tune is described and tested. In an ideal planar magnetic ring, the spin tune—defined as the number of spin precessions per turn—is given by νs=γ G (γ is the Lorentz factor, G the gyromagnetic anomaly). At 970 MeV /c , the deuteron spins coherently precess at a frequency of ≈120 kHz in the Cooler Synchrotron COSY. The spin tune is deduced from the up-down asymmetry of deuteron-carbon scattering. In a time interval of 2.6 s, the spin tune was determined with a precision of the order 10-8, and to 1 ×10-10 for a continuous 100 s accelerator cycle. This renders the presented method a new precision tool for accelerator physics; controlling the spin motion of particles to high precision is mandatory, in particular, for the measurement of electric dipole moments of charged particles in a storage ring.

  8. New Method for a Continuous Determination of the Spin Tune in Storage Rings and Implications for Precision Experiments.

    PubMed

    Eversmann, D; Hejny, V; Hinder, F; Kacharava, A; Pretz, J; Rathmann, F; Rosenthal, M; Trinkel, F; Andrianov, S; Augustyniak, W; Bagdasarian, Z; Bai, M; Bernreuther, W; Bertelli, S; Berz, M; Bsaisou, J; Chekmenev, S; Chiladze, D; Ciullo, G; Contalbrigo, M; de Vries, J; Dymov, S; Engels, R; Esser, F M; Felden, O; Gaisser, M; Gebel, R; Glückler, H; Goldenbaum, F; Grigoryev, K; Grzonka, D; Guidoboni, G; Hanhart, C; Heberling, D; Hempelmann, N; Hetzel, J; Hipple, R; Hölscher, D; Ivanov, A; Kamerdzhiev, V; Kamys, B; Keshelashvili, I; Khoukaz, A; Koop, I; Krause, H-J; Krewald, S; Kulikov, A; Lehrach, A; Lenisa, P; Lomidze, N; Lorentz, B; Maanen, P; Macharashvili, G; Magiera, A; Maier, R; Makino, K; Mariański, B; Mchedlishvili, D; Meißner, Ulf-G; Mey, S; Nass, A; Natour, G; Nikolaev, N; Nioradze, M; Nogga, A; Nowakowski, K; Pesce, A; Prasuhn, D; Ritman, J; Rudy, Z; Saleev, A; Semertzidis, Y; Senichev, Y; Shmakova, V; Silenko, A; Slim, J; Soltner, H; Stahl, A; Stassen, R; Statera, M; Stephenson, E; Stockhorst, H; Straatmann, H; Ströher, H; Tabidze, M; Talman, R; Thörngren Engblom, P; Trzciński, A; Uzikov, Yu; Valdau, Yu; Valetov, E; Vassiliev, A; Weidemann, C; Wilkin, C; Wirzba, A; Wrońska, A; Wüstner, P; Zakrzewska, M; Zuprański, P; Zyuzin, D

    2015-08-28

    A new method to determine the spin tune is described and tested. In an ideal planar magnetic ring, the spin tune-defined as the number of spin precessions per turn-is given by ν(s)=γG (γ is the Lorentz factor, G the gyromagnetic anomaly). At 970  MeV/c, the deuteron spins coherently precess at a frequency of ≈120  kHz in the Cooler Synchrotron COSY. The spin tune is deduced from the up-down asymmetry of deuteron-carbon scattering. In a time interval of 2.6 s, the spin tune was determined with a precision of the order 10^{-8}, and to 1×10^{-10} for a continuous 100 s accelerator cycle. This renders the presented method a new precision tool for accelerator physics; controlling the spin motion of particles to high precision is mandatory, in particular, for the measurement of electric dipole moments of charged particles in a storage ring. PMID:26371657

  9. Precision laser surveying instrument using atmospheric turbulence compensation by determining the absolute displacement between two laser beam components

    DOEpatents

    Veligdan, James T.

    1993-01-01

    Atmospheric effects on sighting measurements are compensated for by adjusting any sighting measurements using a correction factor that does not depend on atmospheric state conditions such as temperature, pressure, density or turbulence. The correction factor is accurately determined using a precisely measured physical separation between two color components of a light beam (or beams) that has been generated using either a two-color laser or two lasers that project different colored beams. The physical separation is precisely measured by fixing the position of a short beam pulse and measuring the physical separation between the two fixed-in-position components of the beam. This precisely measured physical separation is then used in a relationship that includes the indexes of refraction for each of the two colors of the laser beam in the atmosphere through which the beam is projected, thereby to determine the absolute displacement of one wavelength component of the laser beam from a straight line of sight for that projected component of the beam. This absolute displacement is useful to correct optical measurements, such as those developed in surveying measurements that are made in a test area that includes the same dispersion effects of the atmosphere on the optical measurements. The means and method of the invention are suitable for use with either single-ended systems or a double-ended systems.

  10. High-precision method for determining the position of laser beam focal plane

    SciTech Connect

    Malashko, Ya I; Kleimenov, A N; Potemkin, I B; Khabibulin, V M

    2013-12-31

    The method of wavefront doubled-frequency spherical modulation for determining the laser beam waist position has been simulated and experimentally studied. The error in determining the focal plane position is less than 10{sup -5} D. The amplitude of the control doubled-frequency electric signal is experimentally found to correspond to 12% of the total radiation power. (laser beams)

  11. Gliding Motility of Mycoplasma mobile on Uniform Oligosaccharides

    PubMed Central

    Kasai, Taishi; Hamaguchi, Tasuku

    2015-01-01

    ABSTRACT The binding and gliding of Mycoplasma mobile on a plastic plate covered by 53 uniform oligosaccharides were analyzed. Mycoplasmas bound to and glided on only 21 of the fixed sialylated oligosaccharides (SOs), showing that sialic acid is essential as the binding target. The affinities were mostly consistent with our previous results on the inhibitory effects of free SOs and suggested that M. mobile recognizes SOs from the nonreducing end with four continuous sites as follows. (i and ii) A sialic acid at the nonreducing end is tightly recognized by tandemly connected two sites. (iii) The third site is recognized by a loose groove that may be affected by branches. (iv) The fourth site is recognized by a large groove that may be enhanced by branches, especially those with a negative charge. The cells glided on uniform SOs in manners apparently similar to those of the gliding on mixed SOs. The gliding speed was related inversely to the mycoplasma's affinity for SO, suggesting that the detaching step may be one of the speed determinants. The cells glided faster and with smaller fluctuations on the uniform SOs than on the mixtures, suggesting that the drag caused by the variation in SOs influences gliding behaviors. IMPORTANCE Mycoplasma is a group of bacteria generally parasitic to animals and plants. Some Mycoplasma species form a protrusion at a pole, bind to solid surfaces, and glide in the direction of the protrusion. These procedures are essential for parasitism. Usually, mycoplasmas glide on mixed sialylated oligosaccharides (SOs) derived from glycoprotein and glycolipid. Since gliding motility on uniform oligosaccharides has never been observed, this study gives critical information about recognition and interaction between receptors and SOs. PMID:26148712

  12. High-precision onboard orbit determination for small satellites - the GPS-based XNSon X-SAT

    NASA Astrophysics Data System (ADS)

    Gill, E.; Montenbruck, O.; Arichandran, K.; Tan, S.H.; Bretschneider

    2004-11-01

    X-SAT is a mini-satellite developed by the Satellite Engineering Centre of the Nanyang Technological University at Singapore. The focus of the technology- driven mission is the high-resolution remote sensing of the Southeast Asian region for environmental monitoring. To achieve the ambitious mission objectives, the GPS-based X-SAT Navigation System (XNS) will provide high-precision onboard orbit determination solutions as well as orbit forecasts. With a targeted real-time position accuracy of about 1-2 m 3D r.m.s., the XNS provides an unprecedented accuracy performance and thus enables the support of any satellite mission which requires precise onboard position knowledge.

  13. Precise Determination of the Baseline Between the TerraSAR-X and TanDEM-X Satellites

    NASA Astrophysics Data System (ADS)

    Koenig, Rolf; Rothacher, Markus; Michalak, Grzegorz; Moon, Yongjin

    TerraSAR-X, launched on June 15, 2007, and TanDEM-X, to be launched in September 2009, both carry the Tracking, Occultation and Ranging (TOR) category A payload instrument package. The TOR consists of a high-precision dual-frequency GPS receiver, called Integrated GPS Occultation Receiver (IGOR), for precise orbit determination and atmospheric sounding and a Laser retro-reflector (LRR) serving as target for the global Satellite Laser Ranging (SLR) ground station network. The TOR is supplied by the GeoForschungsZentrum Potsdam (GFZ) Germany, and the Center for Space Research (CSR), Austin, Texas. The objective of the German/US collaboration is twofold: provision of atmospheric profiles for use in numerical weather predictions and climate studies from the occultation data and precision SAR data processing based on precise orbits and atmospheric products. For the scientific objectives of the TanDEM- X mission, i.e., bi-static SAR together with TerraSAR-X, the dual-frequency GPS receiver is of vital importance for the millimeter level determination of the baseline or distance between the two spacecrafts. The paper discusses the feasibility of generating millimeter baselines by the example of GRACE, where for validation the distance between the two GRACE satellites is directly available from the micrometer-level intersatellite link measurements. The distance of the GRACE satellites is some 200 km, the distance of the TerraSAR-X/TanDEM-X formation will be some 200 meters. Therefore the proposed approach is then subject to a simulation of the foreseen TerraSAR-X/TanDEM-X formation. The effect of varying space environmental conditions, of possible phase center variations, multi path, and of varying center of mass of the spacecrafts are evaluated and discussed.

  14. Composite tube and plate manufacturing repeatability as determined by precision measurements of thermal strain

    NASA Astrophysics Data System (ADS)

    Riddle, Lenn A.; Tucker, James R.; Bluth, A. Marcel

    2013-09-01

    Composite materials often carry the reputation of demonstrating high variability in critical material properties. The JWST telescope metering structure is fabricated of several thousand separate composite piece parts. The stringent dimensional stability requirements on the metering structure require the critical thermal strain response of every composite piece be verified either at the billet or piece part level. JWST is a unique composite space structure in that it has required the manufacturing of several hundred composite billets that cover many lots of prepreg and many years of fabrication. The flight billet thermal expansion acceptance criteria limits the coefficient of thermal expansion (CTE) to a tolerance ranging between +/-0.014 ppm/K to +/-0.04 ppm/K around a prescribed nominal when measured from 293 K down to 40 K. The different tolerance values represent different material forms including flat plates and different tube cross-section dimensions. A precision measurement facility was developed that could measure at the required accuracy and at a pace that supported the composite part fabrication rate. The test method and facility is discussed and the results of a statistical process analysis of the flight composite billets are surveyed.

  15. Impact of the ionosphere on GPS-based precise orbit determination of Low Earth Orbiters

    NASA Astrophysics Data System (ADS)

    Arnold, Daniel; Jäggi, Adrian; Meyer, Ulrich; Beutler, Gerhard

    2016-04-01

    GPS-derived kinematic precise Swarm orbits are significantly affected by increased position noise over the geomagnetic poles and spurious signatures along the geomagnetic equator. The latter deficiencies were identified for the first time for the Gravity Field and Steady-State Ocean Circulation Explorer (GOCE) mission and are attributed to the distortion of the GPS carrier signal when propagating through portions of the Earth's ionosphere with a large free electron content. Via the GPS-derived kinematic Swarm positions, the spurious signatures along the geomagnetic equator map directly into the derived gravity fields. This was already the case for GOCE and obviously is also true for Swarm. To identify the root cause of the problem, the stochastic and deterministic behavior of the ionosphere is characterized by analyzing data collected by the GPS receivers on various LEO satellites. We compare in particular the performance of the Swarm and the GRACE receivers, because no obvious degradations occur in GRACE orbit and gravity field solutions. Removing GPS data with large ionospheric variations mitigates the ionosphere-induced artifacts in orbits and gravity fields. We illustrate the impact of this measure on the Swarm orbit and gravity field solutions. Making use of the geographically resolved ionosphere characteristics, e.g., to establish better data weighting schemes, results in a better POD performance for LEO satellites.

  16. Precision Determination of Electron Scattering Angle by Differential Nuclear Recoil Energy Method

    SciTech Connect

    Liyanage, Nilanga; Saenboonruang, Kiadtisak

    2015-09-01

    The accurate determination of the scattered electron angle is crucial to electron scattering experiments, both with open-geometry large-acceptance spectrometers and ones with dipole-type magnetic spectrometers for electron detection. In particular, for small central-angle experiments using dipole-type magnetic spectrometers, in which surveys are used to measure the spectrometer angle with respect to the primary electron beam, the importance of the scattering angle determination is emphasized. However, given the complexities of large experiments and spectrometers, the accuracy of such surveys is limited and insufficient to meet demands of some experiments. In this article, we present a new technique for determination of the electron scattering angle based on an accurate measurement of the primary beam energy and the principle of differential nuclear recoil. This technique was used to determine the scattering angle for several experiments carried out at the Experimental Hall A, Jefferson Lab. Results have shown that the new technique greatly improved the accuracy of the angle determination compared to surveys.

  17. Precision determination of electron scattering angle by differential nuclear recoil energy method

    SciTech Connect

    Liyanage, N.; Saenboonruang, K.

    2015-12-01

    The accurate determination of the scattered electron angle is crucial to electron scattering experiments, both with open-geometry large-acceptance spectrometers and ones with dipole-type magnetic spectrometers for electron detection. In particular, for small central-angle experiments using dipole-type magnetic spectrometers, in which surveys are used to measure the spectrometer angle with respect to the primary electron beam, the importance of the scattering angle determination is emphasized. However, given the complexities of large experiments and spectrometers, the accuracy of such surveys is limited and insufficient to meet demands of some experiments. In this article, we present a new technique for determination of the electron scattering angle based on an accurate measurement of the primary beam energy and the principle of differential nuclear recoil. This technique was used to determine the scattering angle for several experiments carried out at the Experimental Hall A, Jefferson Lab. Results have shown that the new technique greatly improved the accuracy of the angle determination compared to surveys.

  18. A precise method to determine the activity of a weak neutron source using a germanium detector.

    PubMed

    Duke, M J M; Hallin, A L; Krauss, C B; Mekarski, P; Sibley, L

    2016-10-01

    A standard high purity germanium (HPGe) detector was used to determine the previously unknown neutron activity of a weak americium-beryllium (AmBe) neutron source. γ rays were created through (27)Al(n,n'), (27)Al(n,γ) and (1)H(n,γ) reactions induced by the neutrons on aluminum and acrylic disks, respectively. These γ rays were measured using the HPGe detector. Given the unorthodox experimental arrangement, a Monte Carlo simulation was developed to model the efficiency of the detector system to determine the neutron activity from the measured γ rays. The activity of our neutron source was determined to be 307.4±5.0n/s and is consistent for the different neutron-induced γ rays.

  19. A precise method to determine the activity of a weak neutron source using a germanium detector.

    PubMed

    Duke, M J M; Hallin, A L; Krauss, C B; Mekarski, P; Sibley, L

    2016-10-01

    A standard high purity germanium (HPGe) detector was used to determine the previously unknown neutron activity of a weak americium-beryllium (AmBe) neutron source. γ rays were created through (27)Al(n,n'), (27)Al(n,γ) and (1)H(n,γ) reactions induced by the neutrons on aluminum and acrylic disks, respectively. These γ rays were measured using the HPGe detector. Given the unorthodox experimental arrangement, a Monte Carlo simulation was developed to model the efficiency of the detector system to determine the neutron activity from the measured γ rays. The activity of our neutron source was determined to be 307.4±5.0n/s and is consistent for the different neutron-induced γ rays. PMID:27474906

  20. Precise determination of earth's center of mass using measurements from the Global Positioning System

    NASA Technical Reports Server (NTRS)

    Vigue, Yvonne; Lichten, Stephen M.; Blewitt, Geoffrey; Heflin, Michael B.; Malla, Rajendra P.

    1992-01-01

    Global Positioning System (GPS) data from a worldwide geodetic experiment were collected during a 3-week period early in 1991. Geocentric station coordinates were estimated using the GPS data, thus defining a dynamically determined reference frame origin which should coincide with the earth center of mass, or geocenter. The 3-week GPS average geocenter estimates agree to 7-13 cm with geocenter estimates determined from satellite laser ranging, a well-established technique. The RMS of daily GPS geocenter estimates were 4 cm for x and y, and 30 cm for z.

  1. 13 Years of TOPEX/POSEIDON Precision Orbit Determination and the 10-fold Improvement in Expected Orbit Accuracy

    NASA Technical Reports Server (NTRS)

    Lemoine, F. G.; Zelensky, N. P.; Luthcke, S. B.; Rowlands, D. D.; Beckley, B. D.; Klosko, S. M.

    2006-01-01

    Launched in the summer of 1992, TOPEX/POSEIDON (T/P) was a joint mission between NASA and the Centre National d Etudes Spatiales (CNES), the French Space Agency, to make precise radar altimeter measurements of the ocean surface. After the remarkably successful 13-years of mapping the ocean surface T/P lost its ability to maneuver and was de-commissioned January 2006. T/P revolutionized the study of the Earth s oceans by vastly exceeding pre-launch estimates of surface height accuracy recoverable from radar altimeter measurements. The precision orbit lies at the heart of the altimeter measurement providing the reference frame from which the radar altimeter measurements are made. The expected quality of orbit knowledge had limited the measurement accuracy expectations of past altimeter missions, and still remains a major component in the error budget of all altimeter missions. This paper describes critical improvements made to the T/P orbit time series over the 13-years of precise orbit determination (POD) provided by the GSFC Space Geodesy Laboratory. The POD improvements from the pre-launch T/P expectation of radial orbit accuracy and Mission requirement of 13-cm to an expected accuracy of about 1.5-cm with today s latest orbits will be discussed. The latest orbits with 1.5 cm RMS radial accuracy represent a significant improvement to the 2.0-cm accuracy orbits currently available on the T/P Geophysical Data Record (GDR) altimeter product.

  2. On the precise determination of the differences of ρ-meson family parameters

    NASA Astrophysics Data System (ADS)

    Bartoš, Erik; Dubnička, Stanislav; Dubničková, Anna Z.; Hayashi, Hisaki

    2014-11-01

    Unlike previous approaches to determine the known ρ-meson family parameters, we have proposed new phenomenological approach based on the exploiting experimental data on e+e- → π+ π- and τ- → π- π0 ντ processes and on the Unitary and Analytic models of the corresponding electromagnetic and weak pion form factors.

  3. Using GLONASS for precise determination of navigation parameters under interference from various sources*

    NASA Astrophysics Data System (ADS)

    Tyapkin, V. N.; Fateev, Yu L.; Dmitriev, D. D.; Kartsan, I. N.; Zelenkov, P. V.; Goncharov, A. E.; Nasyrov, I. R.

    2016-04-01

    This article discusses the main approaches to the designs of systems for determining location and spatial attitude based on satellite navigation equipment. The article describes possible solutions for constructing an angular attitude measurement system capable of spatial interference selection on the basis of a single antenna system.

  4. Precise determination of the refractive index of suspended particles: light transmission as a function of refractive index mismatch

    NASA Astrophysics Data System (ADS)

    McClymer, J. P.

    2016-08-01

    Many fluids appear white because refractive index differences lead to multiple scattering. In this paper, we use safe, low-cost commercial index matching fluids to quantitatively study light transmission as a function of index mismatch, reduce multiple scattering to allow single scattering probes, and to precisely determine the index of refraction of suspended material. The transmission profile is compared with Rayleigh-Gans and Mie theory predictions. The procedure is accessible as a student laboratory project, while providing advantages over other standard methods of measuring the refractive index of an unknown nanoparticle, making it valuable to researchers.

  5. Atom-chip based quantum gravimetry for the precise determination of absolute local gravity

    NASA Astrophysics Data System (ADS)

    Abend, S.

    2015-12-01

    We present a novel technique for the precise measurement of absolute local gravity based on cold atom interferometry. Atom interferometry utilizes the interference of matter waves interrogated by laser light to read out inertial forces. Today's generation of these devices typically operate with test mass samples, that consists of ensembles of laser cooled atoms. Their performance is limited by the velocity spread and finite-size of the test masses that impose systematic uncertainties at the level of a few μGal. Rather than laser cooled atoms we employ quantum degenerate ensembles, so called Bose-Einstein condensates, as ultra-sensitive probes for gravity. These sources offer unique properties in temperature as well as in ensemble size that will allow to overcome the current limitations with the next generation of sensors. Furthermore, atom-chip technologies offer the possibility to generate Bose-Einstein condensates in a fast and reliable way. We show a lab-based prototype that uses the atom-chip itself to retro-reflect the interrogation laser and thus serving as inertial reference inside the vacuum. With this setup it is possible to demonstrate all necessary steps to measure gravity, including the preparation of the source, spanning an interferometer as well as the detection of the output signal, within an area of 1 cm3 right below the atom-chip and to analyze relevant systematic effects. In the framework of the center of excellence geoQ a next generation device is under construction at the Institut für Quantenoptik, that will allow for in-field measurements. This device will feature a state-of-the-art atom-chip source with a high-flux of ultra-cold atoms at a repetition rate of 1-2 Hz. In cooperation with the Müller group at the Institut für Erdmessung the sensor will be characterized in the laboratory first, to be ultimately employed in campaigns to measure the Fennoscandian uplift at the level of 1 μGal. The presented work is part of the center of

  6. In-situ and non-destructive focus determination device for high-precision laser applications

    NASA Astrophysics Data System (ADS)

    Armbruster, Oskar; Naghilou, Aida; Pöhl, Hannes; Kautek, Wolfgang

    2016-09-01

    A non-destructive, in-line, and low-cost focusing device based on an image sensor has been developed and demonstrated. It allows an in situ focus determination for a broad variety of laser types (e.g. cw and pulsed lasers). It provides stringent focusing conditions with high numerical apertures. This approach does not require sub-picosecond and/or auxiliary lasers, or high fluences above damage thresholds. Applications of this system include, but are not limited to the laser-illumination of micro-electrodes, pump-probe microscopy on thin films, and laser ablation of small samples without sufficient surface area for focus determination by ablation. An uncertainty of the focus position by an order of magnitude less than the respective Rayleigh length could be demonstrated.

  7. Oligosaccharide Binding Proteins from Bifidobacterium longum subsp. infantis Reveal a Preference for Host Glycans

    PubMed Central

    Garrido, Daniel; Kim, Jae Han; German, J. Bruce; Raybould, Helen E.; Mills, David A.

    2011-01-01

    Bifidobacterium longum subsp. infantis (B. infantis) is a common member of the infant intestinal microbiota, and it has been characterized by its foraging capacity for human milk oligosaccharides (HMO). Its genome sequence revealed an overabundance of the Family 1 of solute binding proteins (F1SBPs), part of ABC transporters and associated with the import of oligosaccharides. In this study we have used the Mammalian Glycan Array to determine the specific affinities of these proteins. This was correlated with binding protein expression induced by different prebiotics including HMO. Half of the F1SBPs in B. infantis were determined to bind mammalian oligosaccharides. Their affinities included different blood group structures and mucin oligosaccharides. Related to HMO, other proteins were specific for oligomers of lacto-N-biose (LNB) and polylactosamines with different degrees of fucosylation. Growth on HMO induced the expression of specific binding proteins that import HMO isomers, but also bind blood group and mucin oligosaccharides, suggesting coregulated transport mechanisms. The prebiotic inulin induced other family 1 binding proteins with affinity for intestinal glycans. Most of the host glycan F1SBPs in B. infantis do not have homologs in other bifidobacteria. Finally, some of these proteins were found to be adherent to intestinal epithelial cells in vitro. In conclusion, this study represents further evidence for the particular adaptations of B. infantis to the infant gut environment, and helps to understand the molecular mechanisms involved in this process. PMID:21423604

  8. Altimeter crossover methods for precision orbit determination and the mapping of geophysical parameters

    NASA Technical Reports Server (NTRS)

    Shum, C. K.; Schutz, B. E.; Tapley, B. D.; Zhang, B. H.

    1990-01-01

    Accurate orbit determination and the recovery of geophysical parameters are presently attempted via methodologies which use differenced height measurements at the points where the ground tracks of the altimetric satellite orbits intersect. Such 'crossover measurements' could significantly improve the earth's gravity field model. Attention is given to a novel technique employing crossover measurements from two satellites carrying altimeter instruments; this method can observe zonal harmonics of the earth's geopotential which are weakly observed through single-satellite crossovers. This dual-satellite crossover technique will be applicable to data from such future oceanographic satellites as ERS-1.

  9. The GLAS Algorithm Theoretical Basis Document for Precision Attitude Determination (PAD)

    NASA Technical Reports Server (NTRS)

    Bae, Sungkoo; Smith, Noah; Schutz, Bob E.

    2013-01-01

    The Geoscience Laser Altimeter System (GLAS) was the sole instrument for NASAs Ice, Cloud and land Elevation Satellite (ICESat) laser altimetry mission. The primary purpose of the ICESat mission was to make ice sheet elevation measurements of the polar regions. Additional goals were to measure the global distribution of clouds and aerosols and to map sea ice, land topography and vegetation. ICESat was the benchmark Earth Observing System (EOS) mission to be used to determine the mass balance of the ice sheets, as well as for providing cloud property information, especially for stratospheric clouds common over polar areas.

  10. Standardisation and precise determination of the half-life of (44)Sc.

    PubMed

    García-Toraño, E; Peyrés, V; Roteta, M; Sánchez-Cabezudo, A I; Romero, E; Martínez Ortega, A

    2016-03-01

    The half-life of the positron-emitter (44)Sc has been determined by following the decay rate with two measurement systems; an Ionisation Chamber and a HPGe detector. The combination of seven results gives a value of T1/2=4.042 (25)h, about 2% higher than the recommended value of T1/2=3.97 (4)h (Browne, 2011) and with a lower uncertainty. This radionuclide has also been standardised by coincidence counting, and liquid scintillation counting techniques. A (44)Ti/(44)Sc generator developed at CIEMAT was used to obtain the (44)Sc solutions used in all measurements. PMID:26701659

  11. Application of MC-ICPMS to the precise determination of tellurium isotope compositions in chondrites, iron meteorites and sulfides

    NASA Astrophysics Data System (ADS)

    Fehr, Manuela A.; Rehkämper, Mark; Halliday, Alex N.

    2004-03-01

    New mass spectrometric techniques have been developed for the precise and accurate determination of Te isotope compositions. The methods are suitable for the analysis of stony and iron meteorites as well as sulfide mineral separates, such that they can be applied to search for Te isotope anomalies in various solar system materials. Tellurium is first separated from its matrix with a two-stage liquid chromatographic procedure. For iron meteorites, solvent-extraction is used to isolate Te from Fe prior to the column separation. The isotope composition of Te is then determined by multiple-collector inductively coupled plasma-mass spectrometry (MC-ICPMS). Tellurium has a very high first ionization potential and thus MC-ICPMS is much more suitable for the isotopic analyses than positive ion thermal ionization mass spectrometry (TIMS). Only about 100 ng Te are required for a single high precision measurement. Analyses of two terrestrial sulfides, the carbonaceous chondrite Allende and the iron meteorite Canyon Diablo reveal that these have Te isotope compositions that are identical to the terrestrial standard within uncertainty. The Te isotope data acquired for standard solutions as well as meteorites and sulfides display reproducibilities (2[sigma]) of approximately +/-4500 ppm for 120Te/128Te, +/-140 ppm for 122Te/128Te, +/-100 ppm for 124Te/128Te, +/-30 ppm for 126Te/128Te, and +/-60 ppm for 130Te/128Te. Compared to published results for meteorite samples obtained by TIMS, this represents an improvement in precision of about one to two orders of magnitude for 122-130Te/128Te and by a factor of 4 for 120Te/128Te. A number of experiments furthermore demonstrate that the isotope data acquired by MC-ICPMS are accurate, even for complex geological samples.

  12. High Fidelity Non-Gravitational Force Models for Precise and Accurate Orbit Determination of TerraSAR-X

    NASA Astrophysics Data System (ADS)

    Hackel, Stefan; Montenbruck, Oliver; Steigenberger, -Peter; Eineder, Michael; Gisinger, Christoph

    Remote sensing satellites support a broad range of scientific and commercial applications. The two radar imaging satellites TerraSAR-X and TanDEM-X provide spaceborne Synthetic Aperture Radar (SAR) and interferometric SAR data with a very high accuracy. The increasing demand for precise radar products relies on sophisticated validation methods, which require precise and accurate orbit products. Basically, the precise reconstruction of the satellite’s trajectory is based on the Global Positioning System (GPS) measurements from a geodetic-grade dual-frequency receiver onboard the spacecraft. The Reduced Dynamic Orbit Determination (RDOD) approach utilizes models for the gravitational and non-gravitational forces. Following a proper analysis of the orbit quality, systematics in the orbit products have been identified, which reflect deficits in the non-gravitational force models. A detailed satellite macro model is introduced to describe the geometry and the optical surface properties of the satellite. Two major non-gravitational forces are the direct and the indirect Solar Radiation Pressure (SRP). Due to the dusk-dawn orbit configuration of TerraSAR-X, the satellite is almost constantly illuminated by the Sun. Therefore, the direct SRP has an effect on the lateral stability of the determined orbit. The indirect effect of the solar radiation principally contributes to the Earth Radiation Pressure (ERP). The resulting force depends on the sunlight, which is reflected by the illuminated Earth surface in the visible, and the emission of the Earth body in the infrared spectra. Both components of ERP require Earth models to describe the optical properties of the Earth surface. Therefore, the influence of different Earth models on the orbit quality is assessed within the presentation. The presentation highlights the influence of non-gravitational force and satellite macro models on the orbit quality of TerraSAR-X.

  13. Microbial perchlorate reduction: A precise laboratory determination of the chlorine isotope fractionation and its possible biochemical basis

    NASA Astrophysics Data System (ADS)

    Ader, Magali; Chaudhuri, Swades; Coates, John D.; Coleman, Max

    2008-05-01

    Perchlorate-reducing bacteria fractionate chlorine stable isotopes giving a powerful approach to monitor the extent of microbial consumption of perchlorate in contaminated sites undergoing remediation or natural perchlorate containing sites. This study reports the full experimental data and methodology used to re-evaluate the chlorine isotope fractionation of perchlorate reduction in duplicate culture experiments of Azospira suillum strain PS at 37 °C (Δ 37Cl Cl --ClO 4-) previously reported, without a supporting data set by Coleman et al. [Coleman, M.L., Ader, M., Chaudhuri, S., Coates, J.D., 2003. Microbial Isotopic Fractionation of Perchlorate Chlorine. Appl. Environ. Microbiol. 69, 4997-5000] in a reconnaissance study, with the goal of increasing the accuracy and precision of the isotopic fractionation determination. The method fully described here for the first time, allows the determination of a higher precision Δ 37Cl Cl --ClO 4- value, either from accumulated chloride content and isotopic composition or from the residual perchlorate content and isotopic composition. The result sets agree perfectly, within error, giving average Δ 37Cl Cl --ClO 4- = - 14.94 ± 0.15‰. Complementary use of chloride and perchlorate data allowed the identification and rejection of poor quality data by applying mass and isotopic balance checks. This precise Δ 37Cl Cl --ClO 4- value can serve as a reference point for comparison with future in situ or microcosm studies but we also note its similarity to the theoretical equilibrium isotopic fractionation between a hypothetical chlorine species of redox state + 6 and perchlorate at 37 °C and suggest that the first electron transfer during perchlorate reduction may occur at isotopic equilibrium between an enzyme-bound chlorine and perchlorate.

  14. Precise equilibrium structure determination of hydrazoic acid (HN3) by millimeter-wave spectroscopy.

    PubMed

    Amberger, Brent K; Esselman, Brian J; Stanton, John F; Woods, R Claude; McMahon, Robert J

    2015-09-14

    The millimeter-wave spectrum of hydrazoic acid (HN3) was analyzed in the frequency region of 235-450 GHz. Transitions from a total of 14 isotopologues were observed and fit using the A-reduced or S-reduced Hamiltonian. Coupled-cluster calculations were performed to obtain a theoretical geometry, as well as rotation-vibration interaction corrections. These calculated vibration-rotation correction terms were applied to the experimental rotational constants to obtain mixed theoretical/experimental equilibrium rotational constants (Ae, Be, and Ce). These equilibrium rotational constants were then used to obtain an equilibrium (Re) structure using a least-squares fitting routine. The Re structural parameters are consistent with a previously published Rs structure, largely falling within the uncertainty limits of that Rs structure. The present Re geometric parameters of HN3 are determined with exceptionally high accuracy, as a consequence of the large number of isotopologues measured experimentally and the sophisticated (coupled-cluster theoretical treatment (CCSD(T))/ANO2) of the vibration-rotation interactions. The Re structure exhibits remarkable agreement with the CCSD(T)/cc-pCV5Z predicted structure, validating both the accuracy of the ab initio method and the claimed uncertainties of the theoretical/experimental structure determination.

  15. A Complication in Determining the Precise Age of the Solar System

    NASA Astrophysics Data System (ADS)

    Brennecka, G. A.

    2010-01-01

    Primitive components in meteorites contain a detailed record of the conditions and processes in the solar nebula, the cloud of dust and gas surrounding the infant Sun. Determining accurately when the first materials formed requires the lead-lead (Pb-Pb) dating method, a method based on the decay of uranium (U) isotopes to Pb isotopes. The initial ratio of U-238 to U-235 is critical to determining the ages correctly, and many studies have concluded that the ratio is constant for any given age. However, my colleagues at Arizona State University, Institut fur Geowissenschaften, Goethe-Universitat (Frankfurt, Germany), and the Senckenberg Forschungsinstitut und Naturmuseum (also in Frankfurt) and I have found that some calcium-aluminum-rich inclusions (CAIs) in chondritic meteorites deviate from the conventional value for the U-238/U-235 ratio. This could lead to inaccuracies of up to 5 million years in the age of these objects, if no correction is made. Variations in the concentrations of thorium and neodymium with the U-238/U-235 ratio suggest that the ratio may have been lowered by the decay of curium-247, which decays to U-235 with a half-life of 15.6 million years. Curium-247 is created in certain types of energetic supernovae, so its presence suggests that a supernova added material to the pre-solar interstellar cloud between 110 and 140 million years before the Solar System began to form.

  16. Precise equilibrium structure determination of hydrazoic acid (HN{sub 3}) by millimeter-wave spectroscopy

    SciTech Connect

    Amberger, Brent K.; Esselman, Brian J.; Woods, R. Claude; McMahon, Robert J.; Stanton, John F.

    2015-09-14

    The millimeter-wave spectrum of hydrazoic acid (HN{sub 3}) was analyzed in the frequency region of 235-450 GHz. Transitions from a total of 14 isotopologues were observed and fit using the A-reduced or S-reduced Hamiltonian. Coupled-cluster calculations were performed to obtain a theoretical geometry, as well as rotation-vibration interaction corrections. These calculated vibration-rotation correction terms were applied to the experimental rotational constants to obtain mixed theoretical/experimental equilibrium rotational constants (A{sub e}, B{sub e}, and C{sub e}). These equilibrium rotational constants were then used to obtain an equilibrium (R{sub e}) structure using a least-squares fitting routine. The R{sub e} structural parameters are consistent with a previously published R{sub s} structure, largely falling within the uncertainty limits of that R{sub s} structure. The present R{sub e} geometric parameters of HN{sub 3} are determined with exceptionally high accuracy, as a consequence of the large number of isotopologues measured experimentally and the sophisticated (coupled-cluster theoretical treatment (CCSD(T))/ANO2) of the vibration-rotation interactions. The R{sub e} structure exhibits remarkable agreement with the CCSD(T)/cc-pCV5Z predicted structure, validating both the accuracy of the ab initio method and the claimed uncertainties of the theoretical/experimental structure determination.

  17. A High-Precision Determination of the Astrophysical Rate for Production of ^9Be

    NASA Astrophysics Data System (ADS)

    Arnold, C. W.; Clegg, T. B.; Karwowski, H. J.; Rich, G. C.; Tompkins, J. R.; Howell, C. R.

    2010-11-01

    New cross section measurements of the astrophysically important ^9Be(γ,n) reaction have been made from 1.5 to 5.18 MeV. The measurements were made using the nearly monoenergetic circularly polarized γ-ray beam at Triangle Universities Nuclear Laboratory's High Intensity γ-ray Source. Measurements over narrow resonances employed beams with energy spread dE/E <= 1%. The energy-dependent absolute efficiency of the neutron counter used in this work was measured to ± 3% accuracy. New resonance parameters for the 4 lowest lying states in ^9Be were determined. A new reaction rate for α+ α+ n has been determined to better than ± 5%. The present rate is ˜ 25% larger than two widely accepted rates [1-2] in the temperature range important for r-process nucleosynthesis. The implications of this new rate on r-process and nuclear abundance predictions will be discussed.[4pt] [1] C. Angulo et al. Nuc. Phys. A 656 (1999) 3-183. [0pt] [2] K. Sumiyoshi et al. Nuc. Phys A 709 (2002) 467-486.

  18. Xyloglucan oligosaccharides promote growth and activate cellulase: Evidence for a role of cellulase in cell expansion. [Pisum sativum L

    SciTech Connect

    McDougall, G.J.; Fry, S.C. )

    1990-07-01

    Oligosaccharides produced by the action of fungal cellulase on xyloglucans promoted the elongation of etiolated pea (Pisum sativum L.) stem segments in a straight-growth bioassay designed for the determination of auxins. The oligosaccharides were most active at about 1 micromolar. We tested the relative growth-promoting activities of four HPLC-purified oligosaccharides which shared a common glucose{sub 4} {center dot} xylose{sub 3} (XG7) core. The substituted oligosaccharides XG8 (glucose{sub 4} {center dot} xylose{sub 3} {center dot} galactose) and XG9n (glucose{sub 4} {center dot} xylose{sub 3} {center dot} galactose{sub 2}) were more effective than XG7 itself and XG9 (glucose{sub 4} {center dot} xylose{sub 3} {center dot} galactose {center dot} fucose). The same oligosaccharides also promoted the degradation, assayed viscometrically, of xyloglucan by an acidic cellulase from bean (Phaseolus vulgaris L.) leaves. The oligosaccharides were highly active at 10{sup {minus}4} molar, causing up to a fourfold increase in activity, but the effect was still detectable at 1 micromolar. Those oligosaccharides (XG8 and XG9n) which best promoted growth, stimulated cellulase activity to the greatest extent. The oligosaccharides did not stimulate the action of the cellulase in an assay based on the conversion of ({sup 3}H)xyloglucan to ethanol-soluble fragments. This suggests that the oligosaccharides enhanced the midchain hydrolysis of xyloglucan molecules (which would rapidly reduce the viscosity of the solution), at the expense of cleavage near the termini (which would yield ethanol-soluble products).

  19. GPS-Based Precision Orbit Determination for a New Era of Altimeter Satellites: Jason-1 and ICESat

    NASA Technical Reports Server (NTRS)

    Luthcke, Scott B.; Rowlands, David D.; Lemoine, Frank G.; Zelensky, Nikita P.; Williams, Teresa A.

    2003-01-01

    Accurate positioning of the satellite center of mass is necessary in meeting an altimeter mission's science goals. The fundamental science observation is an altimetric derived topographic height. Errors in positioning the satellite's center of mass directly impact this fundamental observation. Therefore, orbit error is a critical Component in the error budget of altimeter satellites. With the launch of the Jason-1 radar altimeter (Dec. 2001) and the ICESat laser altimeter (Jan. 2003) a new era of satellite altimetry has begun. Both missions pose several challenges for precision orbit determination (POD). The Jason-1 radial orbit accuracy goal is 1 cm, while ICESat (600 km) at a much lower altitude than Jason-1 (1300 km), has a radial orbit accuracy requirement of less than 5 cm. Fortunately, Jason-1 and ICESat POD can rely on near continuous tracking data from the dual frequency codeless BlackJack GPS receiver and Satellite Laser Ranging. Analysis of current GPS-based solution performance indicates the l-cm radial orbit accuracy goal is being met for Jason-1, while radial orbit accuracy for ICESat is well below the 54x1 mission requirement. A brief overview of the GPS precision orbit determination methodology and results for both Jason-1 and ICESat are presented.

  20. DETERMINATION OF INTERSTITIAL CHLORIDE IN SHALES AND CONSOLIDATED ROCKS BY A PRECISION LEACHING TECHNIQUE.

    USGS Publications Warehouse

    Manheim, Frank T.; Peck, E.E.; Lane, Candice M.

    1985-01-01

    The authors have devised a technique for determining chloride in interstitial water of consolidated rocks. Samples of rocks ranging from 5 to 10 g are crushed and sieved under controlled conditions and then ground with distilled water to submicron size in a closed mechanical mill. The chloride concentrations and total pore-water concentrations, obtained earlier from the same samples by low-temperature vacuum desiccation, are used to arrive at the 'original' pore-water chloride concentrations by a simple iteration procedure. Interstitial chlorinity results obtained from Cretaceous and Jurassic strata in the Gulf of Mexico coastal areas ranged from 20 to 100 g/kg Cl with reproducibility approaching plus or minus 1%.

  1. Oligosaccharides in goat milk: structure, health effects and isolation.

    PubMed

    Kiskini, A; Difilippo, E

    2013-11-03

    Oligosaccharides have been widely recognized for their prebiotic and anti-infective properties. Among the different types of mammalian milk, the one of humans is the richest source of naturally derived oligosaccharides. However, their use as a basis for functional foods is hampered, due to their structural complexity, which in turn makes their re-synthesis extremely difficult. Thus, oligosaccharides from other sources have to be used. In this sense, goat milk constitutes a very appealing candidate, as it contains the highest amount of oligosaccharides among domestic animals, while goat milk oligosaccharides show significant similarities to human milk oligosaccharides from a structural point of view. Studies on goat milk oligosaccharides are scant, and more data is required in order to provide solid clinical evidence of their beneficial effects on humans. The aim of this review is to collect and present the main research findings on goat milk oligosaccharides structure, health effects and isolation.

  2. A Method of Determining Accuracy and Precision for Dosimeter Systems Using Accreditation Data

    SciTech Connect

    Rick Cummings and John Flood

    2010-12-01

    A study of the uncertainty of dosimeter results is required by the national accreditation programs for each dosimeter model for which accreditation is sought. Typically, the methods used to determine uncertainty have included the partial differentiation method described in the U.S. Guide to Uncertainty in Measurements or the use of Monte Carlo techniques and probability distribution functions to generate simulated dose results. Each of these techniques has particular strengths and should be employed when the areas of uncertainty are required to be understood in detail. However, the uncertainty of dosimeter results can also be determined using a Model II One-Way Analysis of Variance technique and accreditation testing data. The strengths of the technique include (1) the method is straightforward and the data are provided under accreditation testing and (2) the method provides additional data for the analysis of long-term uncertainty using Statistical Process Control (SPC) techniques. The use of SPC to compare variances and standard deviations over time is described well in other areas and is not discussed in detail in this paper. The application of Analysis of Variance to historic testing data indicated that the accuracy in a representative dosimetry system (Panasonic® Model UD-802) was 8.2%, 5.1%, and 4.8% and the expanded uncertainties at the 95% confidence level were 10.7%, 14.9%, and 15.2% for the Accident, Protection Level-Shallow, and Protection Level-Deep test categories in the Department of Energy Laboratory Accreditation Program, respectively. The 95% level of confidence ranges were (0.98 to 1.19), (0.90 to 1.20), and (0.90 to 1.20) for the three groupings of test categories, respectively.

  3. A method of determining accuracy and precision for dosimeter systems using accreditation data.

    PubMed

    Cummings, Frederick; Flood, John R

    2010-12-01

    A study of the uncertainty of dosimeter results is required by the national accreditation programs for each dosimeter model for which accreditation is sought. Typically, the methods used to determine uncertainty have included the partial differentiation method described in the U.S. Guide to Uncertainty in Measurements or the use of Monte Carlo techniques and probability distribution functions to generate simulated dose results. Each of these techniques has particular strengths and should be employed when the areas of uncertainty are required to be understood in detail. However, the uncertainty of dosimeter results can also be determined using a Model II One-Way Analysis of Variance technique and accreditation testing data. The strengths of the technique include (1) the method is straightforward and the data are provided under accreditation testing and (2) the method provides additional data for the analysis of long-term uncertainty using Statistical Process Control (SPC) techniques. The use of SPC to compare variances and standard deviations over time is described well in other areas and is not discussed in detail in this paper. The application of Analysis of Variance to historic testing data indicated that the accuracy in a representative dosimetry system (Panasonic® Model UD-802) was 8.2%, 5.1%, and 4.8% and the expanded uncertainties at the 95% confidence level were 10.7%, 14.9%, and 15.2% for the Accident, Protection Level-Shallow, and Protection Level-Deep test categories in the Department of Energy Laboratory Accreditation Program, respectively. The 95% level of confidence ranges were (0.98 to 1.19), (0.90 to 1.20), and (0.90 to 1.20) for the three groupings of test categories, respectively. PMID:21068596

  4. Oligosaccharide Binding in Escherichia coli Glycogen Synthase

    SciTech Connect

    Sheng, Fang; Yep, Alejandra; Feng, Lei; Preiss, Jack; Geiger, James H.

    2010-11-17

    Glycogen/starch synthase elongates glucan chains and is the key enzyme in the synthesis of glycogen in bacteria and starch in plants. Cocrystallization of Escherichia coli wild-type glycogen synthase (GS) with substrate ADPGlc and the glucan acceptor mimic HEPPSO produced a closed form of GS and suggests that domain-domain closure accompanies glycogen synthesis. Cocrystallization of the inactive GS mutant E377A with substrate ADPGlc and oligosaccharide results in the first oligosaccharide-bound glycogen synthase structure. Four bound oligosaccharides are observed, one in the interdomain cleft (G6a) and three on the N-terminal domain surface (G6b, G6c, and G6d). Extending from the center of the enzyme to the interdomain cleft opening, G6a mostly interacts with the highly conserved N-terminal domain residues lining the cleft of GS. The surface-bound oligosaccharides G6c and G6d have less interaction with enzyme and exhibit a more curled, helixlike structural arrangement. The observation that oligosaccharides bind only to the N-terminal domain of GS suggests that glycogen in vivo probably binds to only one side of the enzyme to ensure unencumbered interdomain movement, which is required for efficient, continuous glucan-chain synthesis.

  5. Accurate and precise determination of critical properties from Gibbs ensemble Monte Carlo simulations

    SciTech Connect

    Dinpajooh, Mohammadhasan; Bai, Peng; Allan, Douglas A.; Siepmann, J. Ilja

    2015-09-21

    Since the seminal paper by Panagiotopoulos [Mol. Phys. 61, 813 (1997)], the Gibbs ensemble Monte Carlo (GEMC) method has been the most popular particle-based simulation approach for the computation of vapor–liquid phase equilibria. However, the validity of GEMC simulations in the near-critical region has been questioned because rigorous finite-size scaling approaches cannot be applied to simulations with fluctuating volume. Valleau [Mol. Simul. 29, 627 (2003)] has argued that GEMC simulations would lead to a spurious overestimation of the critical temperature. More recently, Patel et al. [J. Chem. Phys. 134, 024101 (2011)] opined that the use of analytical tail corrections would be problematic in the near-critical region. To address these issues, we perform extensive GEMC simulations for Lennard-Jones particles in the near-critical region varying the system size, the overall system density, and the cutoff distance. For a system with N = 5500 particles, potential truncation at 8σ and analytical tail corrections, an extrapolation of GEMC simulation data at temperatures in the range from 1.27 to 1.305 yields T{sub c} = 1.3128 ± 0.0016, ρ{sub c} = 0.316 ± 0.004, and p{sub c} = 0.1274 ± 0.0013 in excellent agreement with the thermodynamic limit determined by Potoff and Panagiotopoulos [J. Chem. Phys. 109, 10914 (1998)] using grand canonical Monte Carlo simulations and finite-size scaling. Critical properties estimated using GEMC simulations with different overall system densities (0.296 ≤ ρ{sub t} ≤ 0.336) agree to within the statistical uncertainties. For simulations with tail corrections, data obtained using r{sub cut} = 3.5σ yield T{sub c} and p{sub c} that are higher by 0.2% and 1.4% than simulations with r{sub cut} = 5 and 8σ but still with overlapping 95% confidence intervals. In contrast, GEMC simulations with a truncated and shifted potential show that r{sub cut} = 8σ is insufficient to obtain accurate results. Additional GEMC simulations for hard

  6. Accurate and precise determination of critical properties from Gibbs ensemble Monte Carlo simulations

    NASA Astrophysics Data System (ADS)

    Dinpajooh, Mohammadhasan; Bai, Peng; Allan, Douglas A.; Siepmann, J. Ilja

    2015-09-01

    Since the seminal paper by Panagiotopoulos [Mol. Phys. 61, 813 (1997)], the Gibbs ensemble Monte Carlo (GEMC) method has been the most popular particle-based simulation approach for the computation of vapor-liquid phase equilibria. However, the validity of GEMC simulations in the near-critical region has been questioned because rigorous finite-size scaling approaches cannot be applied to simulations with fluctuating volume. Valleau [Mol. Simul. 29, 627 (2003)] has argued that GEMC simulations would lead to a spurious overestimation of the critical temperature. More recently, Patel et al. [J. Chem. Phys. 134, 024101 (2011)] opined that the use of analytical tail corrections would be problematic in the near-critical region. To address these issues, we perform extensive GEMC simulations for Lennard-Jones particles in the near-critical region varying the system size, the overall system density, and the cutoff distance. For a system with N = 5500 particles, potential truncation at 8σ and analytical tail corrections, an extrapolation of GEMC simulation data at temperatures in the range from 1.27 to 1.305 yields Tc = 1.3128 ± 0.0016, ρc = 0.316 ± 0.004, and pc = 0.1274 ± 0.0013 in excellent agreement with the thermodynamic limit determined by Potoff and Panagiotopoulos [J. Chem. Phys. 109, 10914 (1998)] using grand canonical Monte Carlo simulations and finite-size scaling. Critical properties estimated using GEMC simulations with different overall system densities (0.296 ≤ ρt ≤ 0.336) agree to within the statistical uncertainties. For simulations with tail corrections, data obtained using rcut = 3.5σ yield Tc and pc that are higher by 0.2% and 1.4% than simulations with rcut = 5 and 8σ but still with overlapping 95% confidence intervals. In contrast, GEMC simulations with a truncated and shifted potential show that rcut = 8σ is insufficient to obtain accurate results. Additional GEMC simulations for hard-core square-well particles with various ranges of the

  7. Precise orbit determination of BeiDou constellation based on BETS and MGEX network

    NASA Astrophysics Data System (ADS)

    Lou, Yidong; Liu, Yang; Shi, Chuang; Yao, Xiuguang; Zheng, Fu

    2014-04-01

    Chinese BeiDou Navigation Satellite System is officially operational as a regional constellation with five Geostationary Earth Orbit (GEO) satellites, five Inclined Geosynchronous Satellite Orbit (IGSO) satellites and four Medium Earth Orbit (MEO) satellites. Observations from the BeiDou Experimental Tracking Stations (BETS) and the IGS Multi-GNSS Experiment (MGEX) network from 1 January to 31 March 2013 are processed for orbit determination of the BeiDou constellation. Various arc lengths and solar radiation pressure parameters are investigated. The reduced set of ECOM five-parameter model produces better performance than the full set of ECOM nine-parameter model for BeiDou IGSO and MEO. The orbit overlap for the middle days of 3-day arc solutions is better than 20 cm and 14 cm for IGSO and MEO in RMS, respectively. Satellite laser ranging residuals are better than 10 cm for both IGSO and MEO. For BeiDou GEO, the orbit overlap of several meters and satellite laser ranging residuals of several decimetres can be achieved.

  8. Precise orbit determination of BeiDou constellation based on BETS and MGEX network.

    PubMed

    Lou, Yidong; Liu, Yang; Shi, Chuang; Yao, Xiuguang; Zheng, Fu

    2014-04-15

    Chinese BeiDou Navigation Satellite System is officially operational as a regional constellation with five Geostationary Earth Orbit (GEO) satellites, five Inclined Geosynchronous Satellite Orbit (IGSO) satellites and four Medium Earth Orbit (MEO) satellites. Observations from the BeiDou Experimental Tracking Stations (BETS) and the IGS Multi-GNSS Experiment (MGEX) network from 1 January to 31 March 2013 are processed for orbit determination of the BeiDou constellation. Various arc lengths and solar radiation pressure parameters are investigated. The reduced set of ECOM five-parameter model produces better performance than the full set of ECOM nine-parameter model for BeiDou IGSO and MEO. The orbit overlap for the middle days of 3-day arc solutions is better than 20 cm and 14 cm for IGSO and MEO in RMS, respectively. Satellite laser ranging residuals are better than 10 cm for both IGSO and MEO. For BeiDou GEO, the orbit overlap of several meters and satellite laser ranging residuals of several decimetres can be achieved.

  9. Chemical characterization of oligosaccharides in the milk of six species of New and Old world monkeys

    PubMed Central

    Goto, Kohta; Fukuda, Kenji; Senda, Akitsugu; Saito, Tadao; Kimura, Kazumasa; Glander, Kenneth E.; Hinde, Katie; Dittus, Wolfgang; Milligan, Lauren A.; Power, Michael L.; Oftedal, Olav T.

    2010-01-01

    Human and great ape milks contain a diverse array of milk oligosaccharides, but little is known about the milk oligosaccharides of other primates, and how they differ among taxa. Neutral and acidic oligosaccharides were isolated from the milk of three species of Old World or catarrhine monkeys (Cercopithecidae: rhesus macaque (Macaca mulatta), toque macaque (Macaca sinica) and Hamadryas baboon (Papio hamadryas)) and three of New World or platyrrhine monkeys (Cebidae: tufted capuchin (Cebus apella) and Bolivian squirrel monkey (Saimiri boliviensis); Atelidae: mantled howler (Alouatta palliata)). The milks of these species contained 6–8% total sugar, most of which was lactose: the estimated ratio of oligosaccharides to lactose in Old World monkeys (1:4 to 1:6) was greater than in New World monkeys (1:12 to 1:23). The chemical structures of the oligosaccharides were determined mainly by 1H-NMR spectroscopy. Oligosaccharides containing the type II unit (Gal(β1-4)GlcNAc) were found in the milk of the rhesus macaque, toque macaque, Hamadryas baboon and tufted capuchin, but oligosaccharides containing the type I unit (Gal(β1-3)GlcNAc), which have been found in human and many great ape milks, were absent from the milk of all species studied. Oligosaccharides containing Lewis x (Gal(β1-4)[Fuc(α1-3)]GlcNAc) and 3-fucosyl lactose (3-FL, Gal(β1-4)[Fuc(α1-3)]Glc) were found in the milk of the three cercopithecid monkey species, while 2-fucosyl lactose (5'-FL, Fuc(α1-2)Gal(β1-4)Glc) was absent from all species studied. All of these milks contained acidic oligosaccharides that had N-acetylneuraminic acid as part of their structures, but did not contain oligosaccharides that had N-glycolylneuraminic acid, in contrast to the milk or colostrum of great apes which contain both types of acidic oligosaccharides. Two GalNAc-containing oligosaccharides, lactose 3′-O-sulfate and lacto-N-novopentaose I (Gal(β1-3)[Gal(β1-4)GlcNAc(β1-6)]Gal(β1-4)Glc) were found only in the

  10. Cell-associated oligosaccharides of Bradyrhizobium spp.

    PubMed Central

    Miller, K J; Gore, R S; Johnson, R; Benesi, A J; Reinhold, V N

    1990-01-01

    We report the initial characterization of the cell-associated oligosaccharides produced by four Bradyrhizobium strains: Bradyrhizobium japonicum USDA 110, USDA 94, and ATCC 10324 and Bradyrhizobium sp. strain 32H1. The cell-associated oligosaccharides of these strains were found to be composed solely of glucose and were predominantly smaller than the cyclic beta-1,2-glucans produced by Agrobacterium and Rhizobium species. Linkage studies and nuclear magnetic resonance analyses demonstrated that the bradyrhizobial glucans are linked primarily by beta-1,6 and beta-1,3 glycosidic bonds. Thus, the bradyrhizobia appear to synthesize cell-associated oligosaccharides of structural character substantially different from that of the cyclic beta-1,2-glucans produced by Agrobacterium and Rhizobium species. PMID:2294083

  11. Occurrence of glycine in the core oligosaccharides of Hafnia alvei lipopolysaccharides--identification of disubstituted glycoform.

    PubMed

    Gozdziewicz, Tomasz K; Man-Kupisinska, Aleksandra; Lugowski, Czesław; Lukasiewicz, Jolanta

    2015-05-18

    Endotoxins (lipopolysaccharides, LPS) are the main surface antigens and virulence factors of Gram-negative bacteria involved for example in the development of nosocomial infections and sepsis. They consist of three main regions: O-specific polysaccharide, core oligosaccharide, and lipid A. Bacteria modify LPS structure to escape the immune defence, but also to adapt to environmental conditions. LPS's structures are highly diversified in the O-specific polysaccharide region to evade bactericidal factors of immune system, but retain some common epitopes that are potential candidates for therapeutic strategies against bacterial infections. Common occurrence of glycine within the structure of LPS is a known phenomenon and was previously reported for variety of species. Since glycine residue substitutes mainly core oligosaccharide of LPS, especially inner core region, it was also considered as a part of common epitope for broad-reactive antimicrobial antibodies. Herein, we used multiple-stage electrospray ionisation mass spectrometry to identify glycine substitution in core oligosaccharide type characteristic for Hafnia alvei LPS, and isolated from five strains of different O-serotypes: 32, PCM 1190, PCM 1192, PCM 1200, and PCM 1209. The location of glycine in core oligosaccharide was determined in detail for LPS 1190 using ESI-MS(n). Three glycoforms were identified, including two mono-glycinylated and one diglycinylated core oligosaccharides.

  12. Occurrence of glycine in the core oligosaccharides of Hafnia alvei lipopolysaccharides--identification of disubstituted glycoform.

    PubMed

    Gozdziewicz, Tomasz K; Man-Kupisinska, Aleksandra; Lugowski, Czesław; Lukasiewicz, Jolanta

    2015-05-18

    Endotoxins (lipopolysaccharides, LPS) are the main surface antigens and virulence factors of Gram-negative bacteria involved for example in the development of nosocomial infections and sepsis. They consist of three main regions: O-specific polysaccharide, core oligosaccharide, and lipid A. Bacteria modify LPS structure to escape the immune defence, but also to adapt to environmental conditions. LPS's structures are highly diversified in the O-specific polysaccharide region to evade bactericidal factors of immune system, but retain some common epitopes that are potential candidates for therapeutic strategies against bacterial infections. Common occurrence of glycine within the structure of LPS is a known phenomenon and was previously reported for variety of species. Since glycine residue substitutes mainly core oligosaccharide of LPS, especially inner core region, it was also considered as a part of common epitope for broad-reactive antimicrobial antibodies. Herein, we used multiple-stage electrospray ionisation mass spectrometry to identify glycine substitution in core oligosaccharide type characteristic for Hafnia alvei LPS, and isolated from five strains of different O-serotypes: 32, PCM 1190, PCM 1192, PCM 1200, and PCM 1209. The location of glycine in core oligosaccharide was determined in detail for LPS 1190 using ESI-MS(n). Three glycoforms were identified, including two mono-glycinylated and one diglycinylated core oligosaccharides. PMID:25541016

  13. Precise Determination of the Direct-Indirect Band Gap Energy Crossover In AlxGa1-xAs

    NASA Astrophysics Data System (ADS)

    Fluegel, Brian; Beaton, Daniel; Alberi, Kirstin; Mascarenhas, Angelo

    2014-03-01

    AlxGa1-xAs is a technologically important semiconductor material system for optoelectronic applications due to its type I band alignment with GaAs under nearly lattice-matched conditions. Heterostructure design often relies on exactly controlling the relative positions of the Γ and X conduction band edges, yet despite over three decades of research on this alloy, the precise energy and composition of the direct-indirect band gap crossover is still not well resolved. We report the results of our most recent investigation of AlxGa1-xAs (0.28 < x<0.42) epitaxial films, in which the observation of concurrent photoluminescence (PL) emission peaks from the direct and indirect band gaps combined with time-resolved PL information yields a precise determination of the direct-indirect band gap crossover energy and composition. This work was supported by the DOE Office of Science, Basic Energy Sciences under contract DE-AC36-08GO28308. Acknowledgement: the samples were provided by John Reno from Sandia National Laboratory.

  14. Generation and structural validation of a library of diverse xyloglucan-derived oligosaccharides, including an update on xyloglucan nomenclature.

    PubMed

    Tuomivaara, Sami T; Yaoi, Katsuro; O'Neill, Malcolm A; York, William S

    2015-01-30

    Xyloglucans are structurally complex plant cell wall polysaccharides that are involved in cell growth and expansion, energy metabolism, and signaling. Determining the structure-function relationships of xyloglucans would benefit from the availability of a comprehensive and structurally diverse collection of rigorously characterized xyloglucan oligosaccharides. Here, we present a workflow for the semi-preparative scale generation and purification of neutral and acidic xyloglucan oligosaccharides using a combination of enzymatic and chemical treatments and size-exclusion chromatography. Twenty-six of these oligosaccharides were purified to near homogeneity and their structures validated using a combination of matrix-assisted laser desorption/ionization mass spectrometry, high-performance anion exchange chromatography, and 1H nuclear magnetic resonance spectroscopy. Mass spectrometry and analytical chromatography were compared as methods for xyloglucan oligosaccharide quantification. 1H chemical shifts were assigned using two-dimensional correlation spectroscopy. A comprehensive update of the nomenclature describing xyloglucan side-chain structures is provided for reference.

  15. Generation and structural validation of a library of diverse xyloglucan-derived oligosaccharides, including an update on xyloglucan nomenclature.

    PubMed

    Tuomivaara, Sami T; Yaoi, Katsuro; O'Neill, Malcolm A; York, William S

    2015-01-30

    Xyloglucans are structurally complex plant cell wall polysaccharides that are involved in cell growth and expansion, energy metabolism, and signaling. Determining the structure-function relationships of xyloglucans would benefit from the availability of a comprehensive and structurally diverse collection of rigorously characterized xyloglucan oligosaccharides. Here, we present a workflow for the semi-preparative scale generation and purification of neutral and acidic xyloglucan oligosaccharides using a combination of enzymatic and chemical treatments and size-exclusion chromatography. Twenty-six of these oligosaccharides were purified to near homogeneity and their structures validated using a combination of matrix-assisted laser desorption/ionization mass spectrometry, high-performance anion exchange chromatography, and 1H nuclear magnetic resonance spectroscopy. Mass spectrometry and analytical chromatography were compared as methods for xyloglucan oligosaccharide quantification. 1H chemical shifts were assigned using two-dimensional correlation spectroscopy. A comprehensive update of the nomenclature describing xyloglucan side-chain structures is provided for reference. PMID:25497333

  16. Optimization and application of ICPMS with dynamic reaction cell for precise determination of 44Ca/40Ca isotope ratios.

    PubMed

    Boulyga, Sergei F; Klötzli, Urs; Stingeder, Gerhard; Prohaska, Thomas

    2007-10-15

    An inductively coupled plasma mass spectrometer with dynamic reaction cell (ICP-DRC-MS) was optimized for determining (44)Ca/(40)Ca isotope ratios in aqueous solutions with respect to (i) repeatability, (ii) robustness, and (iii) stability. Ammonia as reaction gas allowed both the removal of (40)Ar+ interference on (40)Ca+ and collisional damping of ion density fluctuations of an ion beam extracted from an ICP. The effect of laboratory conditions as well as ICP-DRC-MS parameters such a nebulizer gas flow rate, rf power, lens potential, dwell time, or DRC parameters on precision and mass bias was studied. Precision (calculated using the "unbiased" or "n - 1" method) of a single isotope ratio measurement of a 60 ng g(-1) calcium solution (analysis time of 6 min) is routinely achievable in the range of 0.03-0.05%, which corresponded to the standard error of the mean value (n = 6) of 0.012-0.020%. These experimentally observed RSDs were close to theoretical precision values given by counting statistics. Accuracy of measured isotope ratios was assessed by comparative measurements of the same samples by ICP-DRC-MS and thermal ionization mass spectrometry (TIMS) by using isotope dilution with a (43)Ca-(48)Ca double spike. The analysis time in both cases was 1 h per analysis (10 blocks, each 6 min). The delta(44)Ca values measured by TIMS and ICP-DRC-MS with double-spike calibration in two samples (Ca ICP standard solution and digested NIST 1486 bone meal) coincided within the obtained precision. Although the applied isotope dilution with (43)Ca-(48)Ca double-spike compensates for time-dependent deviations of mass bias and allows achieving accurate results, this approach makes it necessary to measure an additional isotope pair, reducing the overall analysis time per isotope or increasing the total analysis time. Further development of external calibration by using a bracketing method would allow a wider use of ICP-DRC-MS for routine calcium isotopic measurements, but it

  17. Measurement of muon capture on the proton to 1% precision and determination of the pseudoscalar coupling gP.

    PubMed

    Andreev, V A; Banks, T I; Carey, R M; Case, T A; Clayton, S M; Crowe, K M; Deutsch, J; Egger, J; Freedman, S J; Ganzha, V A; Gorringe, T; Gray, F E; Hertzog, D W; Hildebrandt, M; Kammel, P; Kiburg, B; Knaack, S; Kravtsov, P A; Krivshich, A G; Lauss, B; Lynch, K R; Maev, E M; Maev, O E; Mulhauser, F; Petitjean, C; Petrov, G E; Prieels, R; Schapkin, G N; Semenchuk, G G; Soroka, M A; Tishchenko, V; Vasilyev, A A; Vorobyov, A A; Vznuzdaev, M E; Winter, P

    2013-01-01

    The MuCap experiment at the Paul Scherrer Institute has measured the rate Λ(S) of muon capture from the singlet state of the muonic hydrogen atom to a precision of 1%. A muon beam was stopped in a time projection chamber filled with 10-bar, ultrapure hydrogen gas. Cylindrical wire chambers and a segmented scintillator barrel detected electrons from muon decay. Λ(S) is determined from the difference between the μ(-) disappearance rate in hydrogen and the free muon decay rate. The result is based on the analysis of 1.2 × 10(10) μ(-) decays, from which we extract the capture rate Λ(S) = (714.9 ± 5.4(stat) ± 5.1(syst)) s(-1) and derive the proton's pseudoscalar coupling g(P)(q(0)(2) = -0.88 m(μ)(2)) = 8.06 ± 0.55.

  18. Novel electrochemical fingerprinting methods for the precise determination of Pt(shell) coverage on Ru(core) nanoparticles.

    PubMed

    El Sawy, Ehab N; El-Sayed, Hany A; Birss, Viola I

    2014-10-01

    The surface composition of nanoparticles is critical in defining their chemical and electrochemical properties. However, there are a limited number of tools that can rapidly and reliably establish these important characteristics at this small scale. In the present work, a series of Rucore@Ptshell nanoparticles (2 or 3 nm diameter Ru core, 0 to 2 monolayers of Pt in the shell layer) were synthesized and several novel electrochemical fingerprinting methods were developed to determine the Pt shell characteristics. These involved tracking the charge associated with the reduction of the oxide film formed on the exposed Rucore, as well as the potential and charge associated with COads stripping, giving the precise coverage of the first and second Pt monolayer, respectively.

  19. The extracellular polysaccharide of Porphyridium sp.: an NMR study of lithium-resistant oligosaccharidic fragments.

    PubMed

    Gloaguen, Vincent; Ruiz, Gaël; Morvan, Henri; Mouradi-Givernaud, Aziza; Maes, Emmanuel; Krausz, Pierre; Strecker, Gérard

    2004-01-01

    This study deals with the chemical characterization of an extracellular polysaccharide produced by the unicellular red alga Porphyridium sp. The sugar moiety of this polymer is composed of three neutral monosaccharides (Xyl, Glc, and Gal) and one uronic acid (GlcA). Proteins represent 5.5% of the dry weight of the polymer. Uronic degradation of this exopolysaccharide with lithium in ethylenediamine yielded two different oligosaccharides. The absolute configuration of the constitutive monosaccharides was chemically determined and revealed the presence of D-Xyl, D-Glc, D-, and L-Gal. The following oligosaccharide structures were established by NMR spectroscopy: [carbohydrate structure: see text].

  20. Detection and Quantitation of Afucosylated N-Linked Oligosaccharides in Recombinant Monoclonal Antibodies Using Enzymatic Digestion and LC-MS

    NASA Astrophysics Data System (ADS)

    Du, Yi; May, Kimberly; Xu, Wei; Liu, Hongcheng

    2012-07-01

    The presence of N-linked oligosaccharides in the CH2 domain has a significant impact on the structure, stability, and biological functions of recombinant monoclonal antibodies. The impact is also highly dependent on the specific oligosaccharide structures. The absence of core-fucose has been demonstrated to result in increased binding affinity to Fcγ receptors and, thus, enhanced antibody-dependent cellular cytotoxicity (ADCC). Therefore, a method that can specifically determine the level of oligosaccharides without the core-fucose (afucosylation) is highly desired. In the current study, recombinant monoclonal antibodies and tryptic peptides from the antibodies were digested using endoglycosidases F2 and H, which cleaves the glycosidic bond between the two primary GlcNAc residues. As a result, various oligosaccharides of either complex type or high mannose type that are commonly observed for recombinant monoclonal antibodies are converted to either GlcNAc residue only or GlcNAc with the core-fucose. The level of GlcNAc represents the sum of all afucosylated oligosaccharides, whereas the level of GlcNAc with the core-fucose represents the sum of all fucosylated oligosaccharides. LC-MS analysis of the enzymatically digested antibodies after reduction provided a quick estimate of the levels of afucosylation. An accurate determination of the level of afucosylation was obtained by LC-MS analysis of glycopeptides after trypsin digestion.

  1. Precise Determination of Hypocenters and Focal Mechanisms of Volcanic Earthquakes by the Volcano Observation Network of NIED

    NASA Astrophysics Data System (ADS)

    Ueda, H.; Kohno, Y.; Nagai, M.; Miyagi, Y.; Fujita, E.; Kozono, T.; Tanada, T.

    2012-12-01

    Volcanic earthquakes are usually observed by a seismometer network on a volcano before and during eruptions, caused by crustal stress changes due to underground magma movements or an accumulation into a magma chamber. Precise hypocentral locations and focal mechanisms of the earthquakes provide information on the magmatic process and allow us to assess and predict the volcanic activity. However, focal mechanisms of volcanic earthquakes are not monitored except for relatively large earthquakes because of small size of volcanic earthquakes (M<3) and heterogeneity of volcanic structures. The obstacles also prevent automatic determination of hypocentral locations which are needed for short term eruption prediction. National Institute for Earth Science and Disaster Prevention (NIED) has been developing the volcano observation networks near the major active volcanos in Japan since 2009. The observation networks are equipped with short period seismometers and pendulum type tiltmeters at the bottom of borehole 200 m deep, and broad band seismometers and GPS antennas on the ground. We developed a monitoring technique for precise determination of hypocenters and focal mechanisms of volcanic earthquakes by using similarity of seismic wave forms and the high quality short period seismometer data of the volcano observation networks. Firstly, we extract earthquake groups which have similar seismic wave forms including P and S waves with correlation coefficient of more than 0.9 on more than three stations. Secondly, we display the wave forms with the similar phases in a row and stack them to reduce noises, and then precisely pick again the phases and first motion polarities of P waves. Thirdly, we relocate the hypocenters by Double-Difference method (Waldhauser and Ellsworth, 2000, BSSA) and estimate focal mechanisms by using P wave first motion polarity and S/P amplitude ratios (Hardebeck and Shearer, 2003, BSSA). We applied the technique to earthquake catalogs of Mt. Fuji and

  2. Precise determination of the ratio h/m u: a way to link microscopic mass to the new kilogram

    NASA Astrophysics Data System (ADS)

    Cladé, Pierre; Biraben, François; Julien, Lucile; Nez, François; Guellati-Khelifa, Saída

    2016-10-01

    The ratio h/{{m}\\text{u}} between the Planck constant and the unified atomic mass constant should have a special status in the framework of the future international system of units. Currently (before the redefinition), this ratio allowed the comparison between determinations of h (watt balance) and determinations of {{m}\\text{u}} (the XRCD method). In the future SI, as the Planck constant h will be fixed, the ratio h/{{m}\\text{u}} will ensure the realization of the new kilogram (quantum kilogram) at the atomic scale. Furthermore as the Avogadro constant will be fixed, the carbon molar mass M(12C), which will no longer be equal to 12~\\text{g}\\centerdot \\text{mo}{{\\text{l}}-1} , will be determined from m u. This ratio is also key data for the realization of the kilogram at the macroscopic scale using the XRCD method. In this paper we present the state of the art on experiments that provide the most precise value of the ratio h/{{m}\\text{u}} . We focus on the one that is based on the measurement of the atomic recoil due to the photon momentum.

  3. The Precise Determination of Cd Isotope Ratio in Geological Samples by MC-ICP-MS with Ion Exchange Separation

    NASA Astrophysics Data System (ADS)

    Du, C.; Hu, S.; Wang, D.; Jin, L.; Guo, W.

    2014-12-01

    Cadmium (Cd) is a trace element which occurs at μg g-1 level abundances in the crust. Cd isotopes have great prospects in the study of the cosmogony, the trace of anthropogenic sources, the micronutrient cycling and the ocean productivity. This study develops an optimized technique for the precise and accurate determination of Cd isotopic compositions. Cd was separated from the matrix by elution with AG-MP-1 anionic exchange chromatographic resin. The matrix elements (K, Na, Ca, Al, Fe, and Mg etc.), polyatomic interfered elements (Ge, Ga, Zr, Nb, Ru, and Mo), and isobaric interfered elements (In, Pd and most of Sn) were eluted using HCl with gradient descent concentrations (2, 0.3, 0.06, 0.012 and 0.0012 mol L-1). The same elution procedure was repeated to eliminate the residuel Sn (Sn/Cd < 0.018). The collected Cd was analyzed using MC-ICP-MS, in which the instrumental mass fractionation was controlled by a "sample-standard bracketing" technique. The recovery of Cd larger than 96.85%, and the δ114/110Cd are in the range of -1.43~+0.20‰ for ten geological reference materials (GSD-3a, GSD-5a, GSD-7a, GSD-6, GSD-9, GSD-10, GSD-11, GSD-12, GSD-23, and GSS-1). The δ114/110Cd obtained for GSS-1 soil sample relative to the NIST SRM 3108 Cd solution was 0.20, which was coherent with the literature values (0.08±0.23). This method had a precision of 0.001~0.002% (RSD), an error range of 0.06~0.14 (δ114/110Cd, 2σ), and a long-term reproducibility of 0.12 (δ114/110Cd, 2σ).

  4. High-precision (p,t) reaction to determine {sup 25}Al(p,{gamma}){sup 26}Si reaction rates

    SciTech Connect

    Matic, A.; Berg, A. M. van den; Harakeh, M. N.; Woertche, H. J.; Berg, G. P. A.; Couder, M.; Goerres, J.; LeBlanc, P.; O'Brien, S.; Wiescher, M.; Fujita, K.; Hatanaka, K.; Sakemi, Y.; Shimizu, Y.; Tameshige, Y.; Tamii, A.; Yosoi, M.; Adachi, T.; Fujita, Y.; Shimbara, Y.

    2010-08-15

    Since the identification of ongoing {sup 26}Al production in the universe, the reaction sequence {sup 24}Mg(p,{gamma}){sup 25}Al({beta}{sup +{nu}}){sup 25}Mg(p,{gamma}){sup 26}Al has been studied intensively. At temperatures where the radiative capture on {sup 25}Al (t{sub 1/2}=7.2 s) becomes faster than the {beta}{sup +} decay, the production of {sup 26}Al can be reduced due to the depletion of {sup 25}Al. To determine the resonances relevant for the {sup 25}Al(p,{gamma}){sup 26}Si bypass reaction, we measured the {sup 28}Si(p,t){sup 26}Si reaction with high-energy precision using the Grand Raiden spectrometer at the Research Center for Nuclear Physics, Osaka. Several new energy levels were found above the p threshold and for known states excitation energies were determined with smaller uncertainties. The calculated stellar rates of the bypass reaction agree well with previous results, suggesting that these rates are well established.

  5. Precise Orbit Determination for GEOSAT Follow-On Using Satellite Laser Ranging Data and Intermission Altimeter Crossovers

    NASA Technical Reports Server (NTRS)

    Lemoine, Frank G.; Rowlands, David D.; Luthcke, Scott B.; Zelensky, Nikita P.; Chinn, Douglas S.; Pavlis, Despina E.; Marr, Gregory

    2001-01-01

    The US Navy's GEOSAT Follow-On Spacecraft was launched on February 10, 1998 with the primary objective of the mission to map the oceans using a radar altimeter. Following an extensive set of calibration campaigns in 1999 and 2000, the US Navy formally accepted delivery of the satellite on November 29, 2000. Satellite laser ranging (SLR) and Doppler (Tranet-style) beacons track the spacecraft. Although limited amounts of GPS data were obtained, the primary mode of tracking remains satellite laser ranging. The GFO altimeter measurements are highly precise, with orbit error the largest component in the error budget. We have tuned the non-conservative force model for GFO and the gravity model using SLR, Doppler and altimeter crossover data sampled over one year. Gravity covariance projections to 70x70 show the radial orbit error on GEOSAT was reduced from 2.6 cm in EGM96 to 1.3 cm with the addition of SLR, GFO/GFO and TOPEX/GFO crossover data. Evaluation of the gravity fields using SLR and crossover data support the covariance projections and also show a dramatic reduction in geographically-correlated error for the tuned fields. In this paper, we report on progress in orbit determination for GFO using GFO/GFO and TOPEX/GFO altimeter crossovers. We will discuss improvements in satellite force modeling and orbit determination strategy, which allows reduction in GFO radial orbit error from 10-15 cm to better than 5 cm.

  6. Characterization of the oligosaccharide units of the bovine erythrocyte membrane glycoprotein.

    PubMed

    Emerson, W A; Kornfeld, S

    1976-04-20

    The major glycoprotein of the bovine erythrocyte membrane was purified by extraction of the ghosts with lithium 3,5-diiodosalicylate followed by phenol-water extraction and acidification. The glycoprotein contains 20% protein and 80% carbohydrate by weight and gives a single band on sodium dodecyl sulfate-polyacrylamide gels with an estimated molecular weight of 230000 daltons. The carbohydrate composition of the glycoprotein was determined to be (in residues relative to sialic acid): sialic acid, 1.0; fucose, less than 0.01; mannose, 0.1; galactose, 3.3; N-acetylgalactosamine, 0.9; and N-acetylglucosamine, 2.4. Pronase digestion of the isolated glycoprotein followed by Sephadex G-75 gel filtration resulted in the separation of a small pool of glycopeptides (pool III), which included all of the mannose-containing glycopeptides, from the bulk of the glycopeptide material which was in the void fractions of the column (pool I). Alkaline borohydride treatment released over 95% of the oligosaccharide units in pool I and approximately 30% of the oligosaccharide units in pool III. These oligosaccharides were isolated by gel filtration and ion-exchange chromatography. The oligosaccharides released from pool I had molecular weights of 1100-1400 daltons and contained sialic acid, galactose, and N-acetylglucosamine in molar ratios of 0.5-1:3:2 as well as a partial residue of N-acetylgalactosaminitol. The oligosaccharides released from pool III by alkali had molecular weights of 1300-1600 daltons and contained sialic acid, galactose, N-acetylglucosamine, N-acetylgalactosamine and N-ACETYLgalactosaminitol in molar ratios of 1-2:2:1:1:1. These data indicate that the majority of the oligosaccharide units of the bovine erythrocyte glycoprotein are linked O-glycosidically to the peptide backbone of the molecule. PMID:1268191

  7. Synthesis of high-mannose oligosaccharide analogues through click chemistry: true functional mimics of their natural counterparts against lectins?

    PubMed

    François-Heude, Marc; Méndez-Ardoy, Alejandro; Cendret, Virginie; Lafite, Pierre; Daniellou, Richard; Ortiz Mellet, Carmen; García Fernández, José M; Moreau, Vincent; Djedaïni-Pilard, Florence

    2015-01-26

    Terminal "high-mannose oligosaccharides" are involved in a broad range of biological and pathological processes, from sperm-egg fusion to influenza and human immunodeficiency virus infections. In spite of many efforts, their synthesis continues to be very challenging and actually represents a major bottleneck in the field. Whereas multivalent presentation of mannopyranosyl motifs onto a variety of scaffolds has proven to be a successful way to interfere in recognition processes involving high-mannose oligosaccharides, such constructs fail at reproducing the subtle differences in affinity towards the variety of protein receptors (lectins) and antibodies susceptible to binding to the natural ligands. Here we report a family of functional high-mannose oligosaccharide mimics that reproduce not only the terminal mannopyranosyl display, but also the core structure and the branching pattern, by replacing some inner mannopyranosyl units with triazole rings. Such molecular design can be implemented by exploiting "click" ligation strategies, resulting in a substantial reduction of synthetic cost. The binding affinities of the new "click" high-mannose oligosaccharide mimics towards two mannose specific lectins, namely the plant lectin concanavalin A (ConA) and the human macrophage mannose receptor (rhMMR), have been studied by enzyme-linked lectin assays and found to follow identical trends to those observed for the natural oligosaccharide counterparts. Calorimetric determinations against ConA, and X-ray structural data support the conclusion that these compounds are not just another family of multivalent mannosides, but real "structural mimics" of the high-mannose oligosaccharides.

  8. LC-MS/MS analysis of permethylated free oligosaccharides and N-glycans derived from human, bovine, and goat milk samples.

    PubMed

    Dong, Xue; Zhou, Shiyue; Mechref, Yehia

    2016-06-01

    Oligosaccharides in milk not only provide nutrition to the infants but also have significant immune biofunctions such as inhibition of pathogen binding to the host cell. The main component in milk oligosaccharides is free oligosaccharides. Since the proteins in milk are highly glycosylated, N-glycans in milk also play an import role. In this study, we investigated the permethylated free oligosaccharides and N-glycans extracted from bovine, goat, and human milks using LC-MS/MS. Quantitation profiles of free oligosaccharides and N-glycans were reported. The number of free oligosaccharides observed in bovine, goat, and human milk samples (without isomeric consideration) were 11, 8, and 11, respectively. Human milk had more complex free oligosaccharides structures than the other two milk samples. Totally 58, 21, and 43 N-glycan structures (without isomeric consideration) were associated with whey proteins extracted from bovine, goat, and human milk samples, respectively. Bovine milk free oligosaccharides and N-glycans from whey proteins were highly sialylated and to a lesser extend fucosylated. Goat and human milk free oligosaccharides and N-glycans from whey proteins were both highly fucosylated. Also, the isomeric glycans in milk samples were determined by porous graphitic carbon LC at elevated temperatures. For example, separation of human milk free oligosaccharide Gal-GlcNAc-(Fuc)-Gal-Glc and Gal-GlcNAc-Gal-Glc-Fuc isomers was achieved using porous graphitic carbon column. Permethylation of the glycan structures facilitated the interpretation of MS/MS. For example, internal cleavage and glycosidic bond cleavage are readily distinguished in the tandem mass spectra of permethylated glycans. This feature resulted in the identification of several isomers. PMID:26959529

  9. LC-MS/MS analysis of permethylated free oligosaccharides and N-glycans derived from human, bovine, and goat milk samples.

    PubMed

    Dong, Xue; Zhou, Shiyue; Mechref, Yehia

    2016-06-01

    Oligosaccharides in milk not only provide nutrition to the infants but also have significant immune biofunctions such as inhibition of pathogen binding to the host cell. The main component in milk oligosaccharides is free oligosaccharides. Since the proteins in milk are highly glycosylated, N-glycans in milk also play an import role. In this study, we investigated the permethylated free oligosaccharides and N-glycans extracted from bovine, goat, and human milks using LC-MS/MS. Quantitation profiles of free oligosaccharides and N-glycans were reported. The number of free oligosaccharides observed in bovine, goat, and human milk samples (without isomeric consideration) were 11, 8, and 11, respectively. Human milk had more complex free oligosaccharides structures than the other two milk samples. Totally 58, 21, and 43 N-glycan structures (without isomeric consideration) were associated with whey proteins extracted from bovine, goat, and human milk samples, respectively. Bovine milk free oligosaccharides and N-glycans from whey proteins were highly sialylated and to a lesser extend fucosylated. Goat and human milk free oligosaccharides and N-glycans from whey proteins were both highly fucosylated. Also, the isomeric glycans in milk samples were determined by porous graphitic carbon LC at elevated temperatures. For example, separation of human milk free oligosaccharide Gal-GlcNAc-(Fuc)-Gal-Glc and Gal-GlcNAc-Gal-Glc-Fuc isomers was achieved using porous graphitic carbon column. Permethylation of the glycan structures facilitated the interpretation of MS/MS. For example, internal cleavage and glycosidic bond cleavage are readily distinguished in the tandem mass spectra of permethylated glycans. This feature resulted in the identification of several isomers.

  10. Comparison of TOPEX/Poseidon orbit determination solutions obtained by the Goddard Space Flight Center Flight Dynamics Division and Precision Orbit Determination Teams

    NASA Technical Reports Server (NTRS)

    Doll, C.; Mistretta, G.; Hart, R.; Oza, D.; Cox, C.; Nemesure, M.; Bolvin, D.; Samii, Mina V.

    1993-01-01

    Orbit determination results are obtained by the Goddard Space Flight Center (GSFC) Flight Dynamics Division (FDD) using the Goddard Trajectory Determination System (GTDS) and a real-time extended Kalman filter estimation system to process Tracking Data and Relay Satellite (TDRS) System (TDRSS) measurements in support of the Ocean Topography Experiment (TOPEX)/Poseidon spacecraft navigation and health and safety operations. GTDS is the operational orbit determination system used by the FDD, and the extended Kalman fliter was implemented in an analysis prototype system, the Real-Time Orbit Determination System/Enhanced (RTOD/E). The Precision Orbit Determination (POD) team within the GSFC Space Geodesy Branch generates an independent set of high-accuracy trajectories to support the TOPEX/Poseidon scientific data. These latter solutions use the Geodynamics (GEODYN) orbit determination system with laser ranging tracking data. The TOPEX/Poseidon trajectories were estimated for the October 22 - November 1, 1992, timeframe, for which the latest preliminary POD results were available. Independent assessments were made of the consistencies of solutions produced by the batch and sequential methods. The batch cases were assessed using overlap comparisons, while the sequential cases were assessed with covariances and the first measurement residuals. The batch least-squares and forward-filtered RTOD/E orbit solutions were compared with the definitive POD orbit solutions. The solution differences were generally less than 10 meters (m) for the batch least squares and less than 18 m for the sequential estimation solutions. The differences among the POD, GTDS, and RTOD/E solutions can be traced to differences in modeling and tracking data types, which are being analyzed in detail.

  11. Tracking developmentally regulated post-synthetic processing of homogalacturonan and chitin using reciprocal oligosaccharide probes.

    PubMed

    Mravec, Jozef; Kračun, Stjepan K; Rydahl, Maja G; Westereng, Bjørge; Miart, Fabien; Clausen, Mads H; Fangel, Jonatan U; Daugaard, Mathilde; Van Cutsem, Pierre; De Fine Licht, Henrik H; Höfte, Herman; Malinovsky, Frederikke G; Domozych, David S; Willats, William G T

    2014-12-01

    Polysaccharides are major components of extracellular matrices and are often extensively modified post-synthetically to suit local requirements and developmental programmes. However, our current understanding of the spatiotemporal dynamics and functional significance of these modifications is limited by a lack of suitable molecular tools. Here, we report the development of a novel non-immunological approach for producing highly selective reciprocal oligosaccharide-based probes for chitosan (the product of chitin deacetylation) and for demethylesterified homogalacturonan. Specific reciprocal binding is mediated by the unique stereochemical arrangement of oppositely charged amino and carboxy groups. Conjugation of oligosaccharides to fluorophores or gold nanoparticles enables direct and rapid imaging of homogalacturonan and chitosan with unprecedented precision in diverse plant, fungal and animal systems. We demonstrated their potential for providing new biological insights by using them to study homogalacturonan processing during Arabidopsis thaliana root cap development and by analyzing sites of chitosan deposition in fungal cell walls and arthropod exoskeletons. PMID:25395456

  12. Tracking developmentally regulated post-synthetic processing of homogalacturonan and chitin using reciprocal oligosaccharide probes.

    PubMed

    Mravec, Jozef; Kračun, Stjepan K; Rydahl, Maja G; Westereng, Bjørge; Miart, Fabien; Clausen, Mads H; Fangel, Jonatan U; Daugaard, Mathilde; Van Cutsem, Pierre; De Fine Licht, Henrik H; Höfte, Herman; Malinovsky, Frederikke G; Domozych, David S; Willats, William G T

    2014-12-01

    Polysaccharides are major components of extracellular matrices and are often extensively modified post-synthetically to suit local requirements and developmental programmes. However, our current understanding of the spatiotemporal dynamics and functional significance of these modifications is limited by a lack of suitable molecular tools. Here, we report the development of a novel non-immunological approach for producing highly selective reciprocal oligosaccharide-based probes for chitosan (the product of chitin deacetylation) and for demethylesterified homogalacturonan. Specific reciprocal binding is mediated by the unique stereochemical arrangement of oppositely charged amino and carboxy groups. Conjugation of oligosaccharides to fluorophores or gold nanoparticles enables direct and rapid imaging of homogalacturonan and chitosan with unprecedented precision in diverse plant, fungal and animal systems. We demonstrated their potential for providing new biological insights by using them to study homogalacturonan processing during Arabidopsis thaliana root cap development and by analyzing sites of chitosan deposition in fungal cell walls and arthropod exoskeletons.

  13. Determination of the precision and accuracy of morphological measurements using the Kinect™ sensor: comparison with standard stereophotogrammetry.

    PubMed

    Bonnechère, B; Jansen, B; Salvia, P; Bouzahouene, H; Sholukha, V; Cornelis, J; Rooze, M; Van Sint Jan, S

    2014-01-01

    The recent availability of the Kinect™ sensor, a low-cost Markerless Motion Capture (MMC) system, could give new and interesting insights into ergonomics (e.g. the creation of a morphological database). Extensive validation of this system is still missing. The aim of the study was to determine if the Kinect™ sensor can be used as an easy, cheap and fast tool to conduct morphology estimation. A total of 48 subjects were analysed using MMC. Results were compared with measurements obtained from a high-resolution stereophotogrammetric system, a marker-based system (MBS). Differences between MMC and MBS were found; however, these differences were systematically correlated and enabled regression equations to be obtained to correct MMC results. After correction, final results were in agreement with MBS data (p = 0.99). Results show that measurements were reproducible and precise after applying regression equations. Kinect™ sensors-based systems therefore seem to be suitable for use as fast and reliable tools to estimate morphology. Practitioner Summary: The Kinect™ sensor could eventually be used for fast morphology estimation as a body scanner. This paper presents an extensive validation of this device for anthropometric measurements in comparison to manual measurements and stereophotogrammetric devices. The accuracy is dependent on the segment studied but the reproducibility is excellent. PMID:24646374

  14. Precise Determination of the Zero-Gravity Surface Figure of a Mirror without Gravity-Sag Modeling

    NASA Technical Reports Server (NTRS)

    Bloemhof, Eric E.; Lam, Jonathan C.; Feria, V. Alfonso; Chang, Zensheu

    2007-01-01

    The zero-gravity surface figure of optics used in spaceborne astronomical instruments must be known to high accuracy, but earthbound metrology is typically corrupted by gravity sag. Generally, inference of the zero-gravity surface figure from a measurement made under normal gravity requires finite-element analysis (FEA), and for accurate results the mount forces must be well characterized. We describe how to infer the zero-gravity surface figure very precisely using the alternative classical technique of averaging pairs of measurements made with the direction of gravity reversed. We show that mount forces as well as gravity must be reversed between the two measurements and discuss how the St. Venant principle determines when a reversed mount force may be considered to be applied at the same place in the two orientations. Our approach requires no finite-element modeling and no detailed knowledge of mount forces other than the fact that they reverse and are applied at the same point in each orientation. If mount schemes are suitably chosen, zero-gravity optical surfaces may be inferred much more simply and more accurately than with FEA.

  15. Determination of volume and surface scattering from saline ice using ice sheets with precisely controlled roughness parameters

    SciTech Connect

    Bredow, J.W.; Porco, R.L.; Fung, A.K.; Tjuatja, S.; Jezek, K.C.; Gogineni, S.; Gow, A.J.

    1995-09-01

    Experiments were performed at the US Army Cold Regions Research and Engineering Laboratory (CRREL) in Hanover, NH, to precisely determine the relative contributions of surface and volume scattering from saline ice that has well-known surface roughness characteristics. The ice growth phase of the experiment made use of two 6-ft diameter tanks and a 6-ft diameter mold with known roughness statistical parameters of rms height = 0.25 cm and Gaussian correlation (correlation length = 2.0 cm). One tank was used for growing a moderately thick saline ice sheet with very smooth surface, and the other was used for growing a thin layer of freshwater ice over the surface mold. The latter resulted in a layer with one statistically known rough boundary and one smooth boundary. Wide-bandwidth, multiple incidence angle backscattering measurements were performed, first on the bare saline ice sheet and then on the same sheet after the thin freshwater ice sheet was placed on top of it. Results indicate that the surface scattering dominates over saline ice volume scattering at all frequencies for low incidence angles for both the very smooth and Gaussian rough surfaces. The significance of volume scattering depends strongly on angle of incidence, frequency, volume scattering albedo, surface roughness, and surface correlation function.

  16. Precise orbit and attitude determination using redundant low-cost single-frequency GNSS receivers on a CubeSat

    NASA Astrophysics Data System (ADS)

    Willi, Daniel; Fisler, Michael; Hollenstein, Christine; Männel, Benjamin; Meindl, Michael; Xu, Hui; Rothacher, Markus

    2016-07-01

    CubETH is a technology demonstration mission aimed at using low-cost commercial-off-the-shelf GNSS receivers for space applications. Precise orbit and attitude determination, on-board as well as in post-processing, are the main mission goals. The one unit cube-satellite is equipped with five GNSS antennas, each of them connected to two u-blox multi-GNSS receivers. The position estimation on the satellite is based on the receiver navigation solution. We show that (1) the proper correction of the ionospheric path delay and (2) the position propagation in the Kalman filter are of uppermost importance. Based on available data from the GRACE and GOCE missions, we show how an adapted Klobuchar model leads to a better estimation of the path delay in low Earth orbits. Based on recent signal-simulator tests, we illustrate how the linear propagation in the receiver Kalman filter leads to systematic errors and exhibit a method for improvement.

  17. A Precise Determination of the Mid-infrared Interstellar Extinction Law Based on the APOGEE Spectroscopic Survey

    NASA Astrophysics Data System (ADS)

    Xue, Mengyao; Jiang, B. W.; Gao, Jian; Liu, Jiaming; Wang, Shu; Li, Aigen

    2016-06-01

    A precise measure of the mid-infrared interstellar extinction law is crucial for investigating the properties of interstellar dust, especially larger-sized grains. Based on the stellar parameters derived from the SDSS-III/Apache Point Observatory Galaxy Evolution Experiment (APOGEE) spectroscopic survey, we select a large sample of G-type and K-type giants as the tracers of the Galactic mid-infrared extinction. We calculate the intrinsic stellar color excesses from the stellar effective temperatures and use them to determine the mid-infrared extinction for a given line of sight. For the entire sky of the Milky Way surveyed by APOGEE, we derive the extinctions (relative to {A}{{{K}}{{S}}}, the K S-band extinction at wavelength λ = 2.16 μm) for the four Wide-field Infrared Survey Explorer (WISE) bands at 3.4, 4.6, 12, and 22 μm, the four Spitzer/Infrared Array Camera bands at 3.6, 4.5, 5.8, and 8 μm, the Spitzer/MIPS24 band at 23.7 μm, and, for the first time, the AKARI/S9W band at 8.23 μm. Our results agree with previous works in that the extinction curve is flat in the ˜3-8 μm wavelength range and is generally consistent with the {R}V = 5.5 model curve, except our determination exceeds the model prediction in the WISE/W4 band. Although some previous works found that the mid-IR extinction law appears to vary with the extinction depth {A}{{{K}}{{S}}}, no noticeable variation has been found in this work. The uncertainties are analyzed in terms of the bootstrap resampling method and Monte-Carlo simulation and are found to be rather small.

  18. Determining storm sampling requirements for improving precision of annual load estimates of nutrients from a small forested watershed.

    PubMed

    Ide, Jun'ichiro; Chiwa, Masaaki; Higashi, Naoko; Maruno, Ryoko; Mori, Yasushi; Otsuki, Kyoichi

    2012-08-01

    This study sought to determine the lowest number of storm events required for adequate estimation of annual nutrient loads from a forested watershed using the regression equation between cumulative load (∑L) and cumulative stream discharge (∑Q). Hydrological surveys were conducted for 4 years, and stream water was sampled sequentially at 15-60-min intervals during 24 h in 20 events, as well as weekly in a small forested watershed. The bootstrap sampling technique was used to determine the regression (∑L-∑Q) equations of dissolved nitrogen (DN) and phosphorus (DP), particulate nitrogen (PN) and phosphorus (PP), dissolved inorganic nitrogen (DIN), and suspended solid (SS) for each dataset of ∑L and ∑Q. For dissolved nutrients (DN, DP, DIN), the coefficient of variance (CV) in 100 replicates of 4-year average annual load estimates was below 20% with datasets composed of five storm events. For particulate nutrients (PN, PP, SS), the CV exceeded 20%, even with datasets composed of more than ten storm events. The differences in the number of storm events required for precise load estimates between dissolved and particulate nutrients were attributed to the goodness of fit of the ∑L-∑Q equations. Bootstrap simulation based on flow-stratified sampling resulted in fewer storm events than the simulation based on random sampling and showed that only three storm events were required to give a CV below 20% for dissolved nutrients. These results indicate that a sampling design considering discharge levels reduces the frequency of laborious chemical analyses of water samples required throughout the year.

  19. Oligosaccharides in Urine, Blood, and Feces of Piglets Fed Milk Replacer Containing Galacto-oligosaccharides.

    PubMed

    Difilippo, Elisabetta; Bettonvil, Monique; Willems, Rianne H A M; Braber, Saskia; Fink-Gremmels, Johanna; Jeurink, Prescilla V; Schoterman, Margriet H C; Gruppen, Harry; Schols, Henk A

    2015-12-23

    Human milk oligosaccharides (HMOs) are absorbed into the blood (about 1% of the HMO intake) and subsequently excreted in urine, where they may protect the infant from pathogen infection. As dietary galacto-oligosaccharides (GOS) have partial structural similarities with HMOs, this study investigated the presence of GOS and oligosaccharides originating from milk replacer in blood serum, urine, and cecal and fecal samples of piglets, as a model for human infants. Using liquid chromatography-mass spectrometry and capillary electrophoresis with fluorescence detection, oligosaccharides originating from piglet diet including 3'-sialyllactose and specific GOS ranging from degree of polymerization 3 to 6 were detected in blood serum and in urine of piglets. In blood serum, GOS levels ranged from 16 to 23 μg/mL, representing about 0.1% of the GOS daily intake. In urine, approximately 0.85 g of GOS/g of creatinine was found. Cecum digesta and feces contained low amounts of oligosaccharides, suggesting an extensive GOS intestinal fermentation in piglets. PMID:26621571

  20. Oligosaccharide formation during commercial pear juice processing.

    PubMed

    Willems, Jamie L; Low, Nicholas H

    2016-08-01

    The effect of enzyme treatment and processing on the oligosaccharide profile of commercial pear juice samples was examined by high performance anion exchange chromatography with pulsed amperometric detection and capillary gas chromatography with flame ionization detection. Industrial samples representing the major stages of processing produced with various commercial enzyme preparations were studied. Through the use of commercially available standards and laboratory scale enzymatic hydrolysis of pectin, starch and xyloglucan; galacturonic acid oligomers, glucose oligomers (e.g., maltose and cellotriose) and isoprimeverose were identified as being formed during pear juice production. It was found that the majority of polysaccharide hydrolysis and oligosaccharide formation occurred during enzymatic treatment at the pear mashing stage and that the remaining processing steps had minimal impact on the carbohydrate-based chromatographic profile of pear juice. Also, all commercial enzyme preparations and conditions (time and temperature) studied produced similar carbohydrate-based chromatographic profiles. PMID:26988479

  1. Three Decades of Precision Orbit Determination Progress, Achievements, Future Challenges and its Vital Contribution to Oceanography and Climate Research

    NASA Technical Reports Server (NTRS)

    Luthcke, Scott; Rowlands, David; Lemoine, Frank; Zelensky, Nikita; Beckley, Brian; Klosko, Steve; Chinn, Doug

    2006-01-01

    Although satellite altimetry has been around for thirty years, the last fifteen beginning with the launch of TOPEX/Poseidon (TP) have yielded an abundance of significant results including: monitoring of ENS0 events, detection of internal tides, determination of accurate global tides, unambiguous delineation of Rossby waves and their propagation characteristics, accurate determination of geostrophic currents, and a multi-decadal time series of mean sea level trend and dynamic ocean topography variability. While the high level of accuracy being achieved is a result of both instrument maturity and the quality of models and correction algorithms applied to the data, improving the quality of the Climate Data Records produced from altimetry is highly dependent on concurrent progress being made in fields such as orbit determination. The precision orbits form the reference frame from which the radar altimeter observations are made. Therefore, the accuracy of the altimetric mapping is limited to a great extent by the accuracy to which a satellite orbit can be computed. The TP mission represents the first time that the radial component of an altimeter orbit was routinely computed with an accuracy of 2-cm. Recently it has been demonstrated that it is possible to compute the radial component of Jason orbits with an accuracy of better than 1-cm. Additionally, still further improvements in TP orbits are being achieved with new techniques and algorithms largely developed from combined Jason and TP data analysis. While these recent POD achievements are impressive, the new accuracies are now revealing subtle systematic orbit error that manifest as both intra and inter annual ocean topography errors. Additionally the construction of inter-decadal time series of climate data records requires the removal of systematic differences across multiple missions. Current and future efforts must focus on the understanding and reduction of these errors in order to generate a complete and

  2. Revision of the oligosaccharide structures of yeast carboxypeptidase Y

    SciTech Connect

    Ballou, L.; Hernandez, L.M.; Alvarado, E.; Ballou, C.E. )

    1990-05-01

    The N-linked oligosaccharides from baker's yeast carboxypeptidase Y were analyzed by {sup 1}H NMR and specific mannosidase digestion and found to be identical to those from the Saccharomyces cerevisiae mnn9 mutant bulk mannoprotein. The results support the view that the mnn mutants make oligosaccharides that are a true reflection of the normal biosynthetic pathway and confirm that a recently revised yeast oligosaccharide structure is applicable to wild-type mannoproteins.

  3. Revision of the oligosaccharide structures of yeast carboxypeptidase Y.

    PubMed Central

    Ballou, L; Hernandez, L M; Alvarado, E; Ballou, C E

    1990-01-01

    The N-linked oligosaccharides from baker's yeast carboxypeptidase Y were analyzed by 1H NMR and specific mannosidase digestion and found to be identical to those from the Saccharomyces cerevisiae mnn9 mutant bulk mannoprotein. The results support the view that the mnn mutants make oligosaccharides that are a true reflection of the normal biosynthetic pathway and confirm that a recently revised yeast oligosaccharide structure is applicable to wild-type mannoproteins. PMID:2185468

  4. Effect of fructo-oligosaccharide and isomalto-oligosaccharide addition on baking quality of frozen dough.

    PubMed

    Park, Eun Young; Jang, Sung-Bum; Lim, Seung-Taik

    2016-12-15

    The baking quality of frozen doughs containing different levels of fructo-oligosaccharides (FO) or isomalto-oligosaccharides (IMO) (3-9%, w/w flour), and stored for 0-8weeks at -18°C, was examined. The addition of FO or IMO increased the proof volume of the dough and the loaf volume of bread prepared from frozen dough. A 6% addition of FO or IMO was optimum, giving the highest proof volume and bread loaf volume, but a higher concentration than 6% induced low baking quality including lower proof volume and bread loaf volume. The bread crumb was moister and softer after the addition of FO or IMO before, and even after, frozen storage. Darker crumb colour was observed in the bread after the addition of FO or IMO. The oligosaccharides added to the frozen dough were effective in improving the quality of bread made from frozen dough, except for resulting in a darker bread crumb.

  5. Effect of fructo-oligosaccharide and isomalto-oligosaccharide addition on baking quality of frozen dough.

    PubMed

    Park, Eun Young; Jang, Sung-Bum; Lim, Seung-Taik

    2016-12-15

    The baking quality of frozen doughs containing different levels of fructo-oligosaccharides (FO) or isomalto-oligosaccharides (IMO) (3-9%, w/w flour), and stored for 0-8weeks at -18°C, was examined. The addition of FO or IMO increased the proof volume of the dough and the loaf volume of bread prepared from frozen dough. A 6% addition of FO or IMO was optimum, giving the highest proof volume and bread loaf volume, but a higher concentration than 6% induced low baking quality including lower proof volume and bread loaf volume. The bread crumb was moister and softer after the addition of FO or IMO before, and even after, frozen storage. Darker crumb colour was observed in the bread after the addition of FO or IMO. The oligosaccharides added to the frozen dough were effective in improving the quality of bread made from frozen dough, except for resulting in a darker bread crumb. PMID:27451167

  6. In Vitro Fermentation of Porcine Milk Oligosaccharides and Galacto-oligosaccharides Using Piglet Fecal Inoculum.

    PubMed

    Difilippo, Elisabetta; Pan, Feipeng; Logtenberg, Madelon; Willems, Rianne H A M; Braber, Saskia; Fink-Gremmels, Johanna; Schols, Henk A; Gruppen, Harry

    2016-03-16

    In this study, the in vitro fermentation by piglet fecal inoculum of galacto-oligosaccharides (GOS) and porcine milk oligosaccharides (PMOs) was investigated to identify possible preferences for individual oligosaccharide structures by piglet microbiota. First, acidic PMOs and GOS with degrees of polymerization 4-7 were depleted within 12 h of fermentation, whereas fucosylated and phosphorylated PMOs were partially resistant to fermentation. GOS structures containing β1-3 and β1-2 linkages were preferably fermented over GOS containing β1-4 and β1-6 linkages. Upon in vitro fermentation, acetate and butyrate were produced as the main organic acids. GOS fermentation by piglet inoculum showed a unique fermentation pattern with respect to preference of GOS size and organic acids production.

  7. Structure analysis and laxative effects of oligosaccharides isolated from bananas.

    PubMed

    Wang, Juan; Huang, Hui Hua; Cheng, Yan Feng; Yang, Gong Ming

    2012-10-01

    Banana oligosaccharides (BOS) were extracted with water, and then separated and purified using column chromatography. Gel penetration chromatography was used to determine the molecular weights. Thin layer chromatogram and capillary electrophoresis were employed to analyze the monosaccharide composition. The indican bond and structure of the BOS molecule were determined using Fourier transform infrared spectroscopy and nuclear magnetic resonance. Results showed that BOS were probably composed of eight β-D-pyran glucose units linked with 1→6 indican bonds. The laxative effects of BOS were investigated in mice using the method described in "Handbook of Technical Standards for Testing and Assessment of Health Food in China." The length of the small intestine over which a carbon suspension solution advanced in mice treated with low-, middle-, and high-dose BOS was significantly greater than that in the model group, suggesting that BOS are effective in accelerating the movement of the small intestine.

  8. Precise determination of the critical percolation threshold for the three-dimensional ``Swiss cheese'' model using a growth algorithm

    NASA Astrophysics Data System (ADS)

    Lorenz, Christian D.; Ziff, Robert M.

    2001-02-01

    Precise values for the critical threshold for the three-dimensional "Swiss cheese" continuum percolation model have been calculated using extensive Monte Carlo simulations. These simulations used a growth algorithm and memory blocking scheme similar to what we used previously in three-dimensional lattice percolation. The simulations yield a value for the critical number density nc=0.652 960±0.000 005, which confirms recent work but extends the precision by two significant figures.

  9. Oligosaccharides of milk and colostrum in non-human mammals.

    PubMed

    Urashima, T; Saito, T; Nakamura, T; Messer, M

    2001-05-01

    Mammalian milk or colostrum usually contains, in addition to lactose, a variety of neutral and acidic oligosaccharides. Although the oligosaccharides of human milk have been reviewed in several recent publications, those of non-human mammals have received much less attention. This paper reviews the chemical structures and the variety of milk oligosaccharides in species other than humans, including placental mammals (e.g. primates, domestic herbivores, bears and other carnivores, the rat and the elephant) as well as monotremes (platypus and echidna) and marsupials (e.g. wallaby). The gastrointestinal digestion and absorption and the possible biological functions of these oligosaccharides are also discussed. PMID:11925504

  10. Characterization of the oligosaccharides from lipid-linked oligosaccharides of mung bean seedlings.

    PubMed

    Hori, H; Elbein, A D

    1982-07-01

    Lipid-linked oligosaccharides were synthesized with the particulate enzyme preparation from mung bean (Phaseolus aureus) seedlings in the presence of GDP-[(14)C] mannose. The oligosaccharides were released from the lipids by mild acid hydrolysis and purified by several passages on Biogel P-4 columns. Five different oligosaccharides were purified in this way. Based on their relative elution constants (K(d)) compared to a variety of standard oligosaccharides, they were sized as (mannose-acetylglucosamine) Man(7)GlcNAc(2), Man(5)GlcNAc(2), Man(3)GlcNAc(2), Man(2)GlcNAc(2), and ManGlcNAc(2). These oligosaccharides were treated with endoglucosaminidase H and alpha- and beta-mannosidase, and the products were examined on Biogel P-4 columns. They also were subjected to a number of chemical treatments including analysis of the reducing sugar by NaB(3)H(4) reduction, methylation analysis, and in some cases acetolysis. From these data, the likely structures of these oligosaccharides are as follows: E, Manbeta-GlcNAc-GlcNAc; D, Manalpha1-->3Manbeta-GlcNAc-GlcNAc; C, Manalpha1-->2Manalpha1-->3Manbeta-GlcNAc-GlcNAc; B, Manalpha1-->2Manalpha1-->2Manalpha1--> 3(Manalpha1-->6)Manbeta-GlcNAc-GlcNAc; and A, Manalpha1-->2Manalpha1--> 2Manalpha1-->3(Manalpha1--> [Manalpha1-->6]Manalpha1-->6) Manbeta-GlcNAc-GlcNAc. The synthesis of the Man(7)GlcNAc(2) was greatly diminished when tunicamycin (10 mug/ml) was added to the incubation mixtures. PMID:16662430

  11. Characterization of the Oligosaccharides from Lipid-Linked Oligosaccharides of Mung Bean Seedlings 1

    PubMed Central

    Hori, Hidetaka; Elbein, Alan D.

    1982-01-01

    Lipid-linked oligosaccharides were synthesized with the particulate enzyme preparation from mung bean (Phaseolus aureus) seedlings in the presence of GDP-[14C] mannose. The oligosaccharides were released from the lipids by mild acid hydrolysis and purified by several passages on Biogel P-4 columns. Five different oligosaccharides were purified in this way. Based on their relative elution constants (Kd) compared to a variety of standard oligosaccharides, they were sized as (mannose-acetylglucosamine) Man7GlcNAc2, Man5GlcNAc2, Man3GlcNAc2, Man2GlcNAc2, and ManGlcNAc2. These oligosaccharides were treated with endoglucosaminidase H and α- and β-mannosidase, and the products were examined on Biogel P-4 columns. They also were subjected to a number of chemical treatments including analysis of the reducing sugar by NaB3H4 reduction, methylation analysis, and in some cases acetolysis. From these data, the likely structures of these oligosaccharides are as follows: E, Manβ-GlcNAc-GlcNAc; D, Manα1→3Manβ-GlcNAc-GlcNAc; C, Manα1→2Manα1→3Manβ-GlcNAc-GlcNAc; B, Manα1→2Manα1→2Manα1→ 3(Manα1→6)Manβ-GlcNAc-GlcNAc; and A, Manα1→2Manα1→ 2Manα1→3(Manα1→ [Manα1→6]Manα1→6) Manβ-GlcNAc-GlcNAc. The synthesis of the Man7GlcNAc2 was greatly diminished when tunicamycin (10 μg/ml) was added to the incubation mixtures. PMID:16662430

  12. Equilibrium-binding studies of pig laryngeal cartilage proteoglycans with hyaluronate oligosaccharide fractions.

    PubMed Central

    Nieduszynski, I A; Sheehan, J K; Phelps, C F; Hardingham, T E; Muir, H

    1980-01-01

    The binding of hyaluronate oligosaccharide fractions to proteoglycans from pig laryngeal cartilage has been studied by equilibrium dialysis in dilute solution. It has been shown that: (1) each proteoglycan monomer binds only one hyaluronate oligosaccharide molecule [containing about eighteen saccharide residues (HA approximately 18) and of number-average molecule weight (Mn) 37501]; (2) the dissociation constant, Kd, for interaction between proteoglycan monomer and oligosaccharide HA approximately 18 is 3 x 10(-8) M at 6 degrees C at I 0.15-0.5, pH 7.4; (3) the dissociation constant has little dependence on temperature, so that Kd at 54 degrees C is 3 x 10(-7) M under the same conditions; (4) the aggregatability is high at 6 degrees C, falls significantly at 54 degrees C, but much of it can be recovered on cooling to 6 degrees C again, demonstrating reversible denaturation; (5) a method for determining the proportion of the proteoglycan molecules capable of binding to hyaluronate by equilibrium dialysis was compared with gel-chromatographic and ultracentrifugal methods; (6) a hyaluronate oligosaccharide, HA approximately 56 (Mn 11 000), could bind more than one proteoglycan molecule; (7) consideration of ultracentrifugal data shows that when proteoglycans bind to a hyaluronate of larger size (mol..wt. 670 000), an average Kd of 12 x 10(7) M fits the data in 0.5 M-guanidine hydrochloride at 20 degrees C. PMID:7378043

  13. Sequence analysis of the pyruvylated galactan sulfate-derived oligosaccharides by negative-ion electrospray tandem mass spectrometry.

    PubMed

    Li, Na; Mao, Wenjun; Liu, Xue; Wang, Shuyao; Xia, Zheng; Cao, Sujian; Li, Lin; Zhang, Qi; Liu, Shan

    2016-10-01

    Five sulfated oligosaccharide fragments, F1-F5, were prepared from a pyruvylated galactan sulfate from the green alga Codium divaricatum, by partial depolymerization using mild acid hydrolysis and purification with gel-permeation chromatography. Negative-ion electrospray tandem mass spectrometry with collision-induced dissociation (ES-CID-MS/MS) is attempted for sequence determination of the sulfated oligosaccharides. The sequence of F1 with homogeneous disaccharide composition was first characterized to be Galp-(4SO4)-(1 → 3)-Galp by detailed nuclear magnetic resonance spectroscopic analyses. The fragmentation pattern of F1 in the product ion spectra was established on the basis of negative-ion ES-CID MS/MS, which was then applied to sequence analysis of other sulfated oligosaccharides. The sequences of F2 and F3 were deduced to be Galp-(4SO4)-(1 → 3)-Galp-(1 → 3)-Galp-(1 → 3)-Galp and 3,4-O-(1-carboxyethylidene)-Galp-(6SO4)-(1 → 3)-Galp, respectively. The sequences of major fragments in F4 and F5 were also deduced. The investigation demonstrated that negative-ion ES-CID-MS/MS was an efficient method for the sequence analysis of the pyruvylated galactan sulfate-derived oligosaccharides which revealed the patterns of substitution and glycosidic linkages. The pyruvylated galactan sulfate-derived oligosaccharides were novel sulfated oligosaccharides different from other algal polysaccharide-derived oligosaccharides. PMID:27471831

  14. Tissue-specific N-glycosylation, site-specific oligosaccharide patterns and lentil lectin recognition of rat Thy-1.

    PubMed Central

    Parekh, R B; Tse, A G; Dwek, R A; Williams, A F; Rademacher, T W

    1987-01-01

    To examine the extent to which protein structure and tissue-type influence glycosylation, we have determined the oligosaccharide structures at each of the three glycosylation sites (Asn-23, 74 and 98) of the cell surface glycoprotein Thy-1 isolated from rat brain and thymus. The results show that there is tissue-specificity of glycosylation and that superimposed on this is a significant degree of site-specificity. On the basis of the site distribution of oligosaccharides, we find that no Thy-1 molecules are in common between the two tissues despite the amino acid sequences being identical. We suggest, therefore, that by controlling N-glycosylation a tissue creates an unique set of glycoforms (same polypeptide but with oligosaccharides that differ either in sequence or disposition). The structures at each of the three sites were also determined for the thymocyte Thy-1 that binds to lentil lectin (Thy-1 L+) and for that which does not (Thy-1 L-). Segregation of intact thymus Thy-1 into two distinct sets of glycoforms by lentil lectin was found to be due to the structures at site 74. Analysis of oligosaccharide structures at the 'passenger' sites (23 and 98) suggests that either Thy-1 L+ and Thy-1 L- molecules are made in different cell-types or that the biosynthesis of oligosaccharides at one site is influenced by the glycosylation at other sites. PMID:2886334

  15. Determination of the Antiproton-to-Electron Mass Ratio by Precision Laser Spectroscopy of pHe{sup +}

    SciTech Connect

    Hori, M.; Dax, A.; Eades, J.; Gomikawa, K.; Hayano, R.S.; Ono, N.; Pirkl, W.; Widmann, E.; Torii, H.A.; Juhasz, B.; Barna, D.; Horvath, D.

    2006-06-23

    A femtosecond optical frequency comb and continuous-wave pulse-amplified laser were used to measure 12 transition frequencies of antiprotonic helium to fractional precisions of (9-16)x10{sup -9}. One of these is between two states having microsecond-scale lifetimes hitherto unaccessible to our precision laser spectroscopy method. Comparisons with three-body QED calculations yielded an antiproton-to-electron mass ratio of M{sub p}/m{sub e}=1836.152 674(5)

  16. Precise determination of full matrix of piezo-optic coefficients with a four-point bending technique: the example of lithium niobate crystals.

    PubMed

    Krupych, Oleg; Savaryn, Viktoriya; Vlokh, Rostyslav

    2014-04-01

    A recently proposed technique representing a combination of digital imaging laser interferometry with a classical four-point bending method is applied to a canonical nonlinear optical crystal, LiNbO₃, to precisely determine a full matrix of its piezo-optic coefficients (POCs). The contribution of a secondary piezo-optic effect to the POCs is investigated experimentally and analyzed theoretically. Based on the POCs thus obtained, a full matrix of strain-optic coefficients (SOCs) is calculated and the appropriate errors are estimated. A comparison of our experimental errors for the POCs and SOCs with the known reference data allows us to claim the present technique as the most precise.

  17. A general approach to desalting oligosaccharides released from glycoproteins.

    PubMed

    Packer, N H; Lawson, M A; Jardine, D R; Redmond, J W

    1998-08-01

    Desalting of sugar samples is essential for the success of many techniques of carbohydrate analysis such as mass spectrometry, capillary electrophoresis, anion exchange chromatography, enzyme degradation and chemical derivatization. All desalting methods which are currently used have limitations: for example, mixed-bed ion-exchange columns risk the loss of charged sugars, precipitation of salt by a non-aqueous solvent can result in co-precipitation of oligosaccharides, and gel chromatography uses highly crosslinked packings in which separation of small oligosaccharides is difficult to achieve. We demonstrate that graphitized carbon as a solid phase extraction cartridge can be used for the purification of oligosaccharides (or their derivatives) from solutions containing one or more of the following contaminants: salts (including salts of hydroxide, acetate, phosphate), monosaccharides, detergents (sodium dodecyl sulfate and Triton X-100), protein (including enzymes) and reagents for the release of oligosaccharides from glycoconjugates (such as hydrazine and sodium borohydride). There is complete recovery of the oligosaccharides from the adsorbent which can also be used to fractionate acidic and neutral glycans. Specific applications such as clean-up of N-linked oligosaccharides after removal by PNGase F and hydrazine, desalting of O-linked glycans after removal by alkali, on-line desalting of HPAEC-separated oligosaccharides and beta-eliminated alditols prior to electrospray mass spectrometry, and purification of oligosaccharides from urine are described.

  18. Nitric Oxide-Releasing Chitosan Oligosaccharides as Antibacterial Agents

    PubMed Central

    Lu, Yuan; Slomberg, Danielle L.; Schoenfisch, Mark H.

    2014-01-01

    Secondary amine-functionalized chitosan oligosaccharides of different molecular weights (i.e., ~2500, 5000, 10000) were synthesized by grafting 2-methyl aziridine from the primary amines on chitosan oligosaccharides, followed by reaction with nitric oxide (NO) gas under basic conditions to yield N-diazeniumdiolate NO donors. The total NO storage, maximum NO flux, and half-life of the resulting NO-releasing chitosan oligosaccharides were controlled by the molar ratio of 2-methyl aziridine to primary amines (e.g., 1:1, 2:1) and the functional group surrounding the N-diazeniumdiolates (e.g., polyethylene glycol (PEG) chains), respectively. The secondary amine-modified chitosan oligosaccharides greatly increased the NO payload over existing biodegradable macromolecular NO donors. In addition, the water-solubility of the chitosan oligosaccharides enabled their penetration across the extracellular polysaccharides matrix of Pseudomonas aeruginosa biofilms and association with embedded bacteria. The effectiveness of these chitosan oligosaccharides at biofilm eradication was shown to depend on both the molecular weight and ionic characteristics. Low molecular weight and cationic chitosan oligosaccharides exhibited rapid association with bacteria throughout the entire biofilm, leading to enhanced biofilm killing. At concentrations resulting in 5-log killing of bacteria in Pseudomonas aeruginosa biofilms, the NO-releasing and control chitosan oligosaccharides elicited no significant cytotoxicity to mouse fibroblast L929 cells in vitro. PMID:24268196

  19. Spatial distribution of precisely determined hypocenters and focal mechanisms in the Izu-Honshu collision zone, central Japan

    NASA Astrophysics Data System (ADS)

    Yukutake, Y.; Takeda, T.; Honda, R.; Yoshida, A.

    2010-12-01

    In the Tanzawa region, central Japan, where the Izu-Bonin arc collides into the Honshu crust, the Philippine Sea plate (PHS) subducts intricately and the seismicity is particularly high. The configuration of the PHS plate in the region has been estimated based on the hypocenter distribution, seismic velocity tomography, and seismic profile (e.g. Ishida, 1992; Matsubara et al., 2005; Sato et al., 2005). However, the relationship between the structure of the PHP and the seismicity in the collision zone is still not clearly understood. To elucidate the seismotectonics, it is essential to get precisely determined hypocenters and focal mechanisms. We used data from 107 permanent online stations operated by Hot Springs Research Institute of Kanagawa Prefecture, NIED Hi-net and JMA, which are located within 80-km from the epicenters. We relocated hypocenters of 4351 events that occurred in and around the Tanzawa region with the double-difference relocation algorithm (DD method) (Waldhauser and Ellsworth, 2000), using the differential arrival time obtained by both manual picking and waveform cross-correlation analysis. Then, we determined the focal mechanisms of 420 events using the absolute P- and SH-wave amplitudes by adding the P-wave polarities. We found that the earthquakes in the eastern Tanzawa region are distributed along the planar zone slightly dipping toward east. On the other hand, the earthquakes in the western region spread out in the volume of approximately 10 km × 10 km × 10 km. We examined similarity between the focal mechanisms of earthquakes and a reference of focal mechanism that is inferred from the configuration and relative motion of the PHP. We assumed the fault plane direction of the reference focal mechanism based on the fault model of the 1923 Kanto Earthquake (Matsu'ura et al., 1980). The slip direction is assumed so as to be consistent with the relative motion of the PHP with respect to the Eurasian plate in the Kanto region (Seno, 1993). The

  20. Automated assembly of oligosaccharides containing multiple cis-glycosidic linkages

    NASA Astrophysics Data System (ADS)

    Hahm, Heung Sik; Hurevich, Mattan; Seeberger, Peter H.

    2016-09-01

    Automated glycan assembly (AGA) has advanced from a concept to a commercial technology that rapidly provides access to diverse oligosaccharide chains as long as 30-mers. To date, AGA was mainly employed to incorporate trans-glycosidic linkages, where C2 participating protecting groups ensure stereoselective couplings. Stereocontrol during the installation of cis-glycosidic linkages cannot rely on C2-participation and anomeric mixtures are typically formed. Here, we demonstrate that oligosaccharides containing multiple cis-glycosidic linkages can be prepared efficiently by AGA using monosaccharide building blocks equipped with remote participating protecting groups. The concept is illustrated by the automated syntheses of biologically relevant oligosaccharides bearing various cis-galactosidic and cis-glucosidic linkages. This work provides further proof that AGA facilitates the synthesis of complex oligosaccharides with multiple cis-linkages and other biologically important oligosaccharides.

  1. Inhibitory effect of chondroitin sulfate oligosaccharides on bovine testicular hyaluronidase.

    PubMed

    Kakizaki, Ikuko; Koizumi, Hideyo; Chen, Fengchao; Endo, Masahiko

    2015-05-01

    Hyaluronan and chondroitin sulfates are prominent components of the extracellular matrices of animal tissues; however, their functions in relation to their oligosaccharide structures have not yet been fully elucidated. The oligosaccharides of hyaluronan and chondroitin sulfate were prepared and used to investigate their effects on the hydrolysis and transglycosylation reactions of bovine testicular hyaluronidase when hyaluronan was used as a substrate. Hydrolysis and transglycosylation activities were assessed in independent reaction systems by analyzing the products by HPLC. The hydrolysis and transglycosylation reactions of bovine testicular hyaluronidase were dose-dependently inhibited by chondroitin sulfate oligosaccharides, but not by hyaluronan or chondroitin oligosaccharides. A kinetic analysis of the hydrolysis reaction using hyaluronan octasaccharide revealed that the inhibition mode by chondroitin sulfate oligosaccharides was competitive.

  2. Automated assembly of oligosaccharides containing multiple cis-glycosidic linkages

    PubMed Central

    Hahm, Heung Sik; Hurevich, Mattan; Seeberger, Peter H

    2016-01-01

    Automated glycan assembly (AGA) has advanced from a concept to a commercial technology that rapidly provides access to diverse oligosaccharide chains as long as 30-mers. To date, AGA was mainly employed to incorporate trans-glycosidic linkages, where C2 participating protecting groups ensure stereoselective couplings. Stereocontrol during the installation of cis-glycosidic linkages cannot rely on C2-participation and anomeric mixtures are typically formed. Here, we demonstrate that oligosaccharides containing multiple cis-glycosidic linkages can be prepared efficiently by AGA using monosaccharide building blocks equipped with remote participating protecting groups. The concept is illustrated by the automated syntheses of biologically relevant oligosaccharides bearing various cis-galactosidic and cis-glucosidic linkages. This work provides further proof that AGA facilitates the synthesis of complex oligosaccharides with multiple cis-linkages and other biologically important oligosaccharides. PMID:27580973

  3. Analysis, structural characterization, and bioactivity of oligosaccharides derived from lactose.

    PubMed

    Moreno, F Javier; Montilla, Antonia; Villamiel, Mar; Corzo, Nieves; Olano, Agustín

    2014-06-01

    The increasing interest for prebiotic carbohydrates as functional food ingredients has promoted the synthesis of galactooligosaccharides and new lactose derivatives. This review provides a comprehensive overview on the chromatographic analysis, structural characterization, and bioactivity studies of lactose-derived oligosaccharides. The most common chromatographic techniques used for the separation and structural characterization of this type of oligosaccharides, including GC and HPLC in different operational modes, coupled to various detectors are discussed. Insights on oligosaccharide MS fragmentation patterns, using different ionization sources and mass analyzers, as well as data on structural analysis by NMR spectroscopy are also described. Finally, this article deals with the bioactive effects of galacto oligosaccharides and oligosaccharides derived from lactulose on the gastrointestinal and immune systems, which support their consumption to provide significant health benefits.

  4. Automated assembly of oligosaccharides containing multiple cis-glycosidic linkages.

    PubMed

    Hahm, Heung Sik; Hurevich, Mattan; Seeberger, Peter H

    2016-01-01

    Automated glycan assembly (AGA) has advanced from a concept to a commercial technology that rapidly provides access to diverse oligosaccharide chains as long as 30-mers. To date, AGA was mainly employed to incorporate trans-glycosidic linkages, where C2 participating protecting groups ensure stereoselective couplings. Stereocontrol during the installation of cis-glycosidic linkages cannot rely on C2-participation and anomeric mixtures are typically formed. Here, we demonstrate that oligosaccharides containing multiple cis-glycosidic linkages can be prepared efficiently by AGA using monosaccharide building blocks equipped with remote participating protecting groups. The concept is illustrated by the automated syntheses of biologically relevant oligosaccharides bearing various cis-galactosidic and cis-glucosidic linkages. This work provides further proof that AGA facilitates the synthesis of complex oligosaccharides with multiple cis-linkages and other biologically important oligosaccharides. PMID:27580973

  5. The Gaia-ESO Survey: Empirical determination of the precision of stellar radial velocities and projected rotation velocities

    NASA Astrophysics Data System (ADS)

    Jackson, R. J.; Jeffries, R. D.; Lewis, J.; Koposov, S. E.; Sacco, G. G.; Randich, S.; Gilmore, G.; Asplund, M.; Binney, J.; Bonifacio, P.; Drew, J. E.; Feltzing, S.; Ferguson, A. M. N.; Micela, G.; Neguerela, I.; Prusti, T.; Rix, H.-W.; Vallenari, A.; Alfaro, E. J.; Allende Prieto, C.; Babusiaux, C.; Bensby, T.; Blomme, R.; Bragaglia, A.; Flaccomio, E.; Francois, P.; Hambly, N.; Irwin, M.; Korn, A. J.; Lanzafame, A. C.; Pancino, E.; Recio-Blanco, A.; Smiljanic, R.; Van Eck, S.; Walton, N.; Bayo, A.; Bergemann, M.; Carraro, G.; Costado, M. T.; Damiani, F.; Edvardsson, B.; Franciosini, E.; Frasca, A.; Heiter, U.; Hill, V.; Hourihane, A.; Jofré, P.; Lardo, C.; de Laverny, P.; Lind, K.; Magrini, L.; Marconi, G.; Martayan, C.; Masseron, T.; Monaco, L.; Morbidelli, L.; Prisinzano, L.; Sbordone, L.; Sousa, S. G.; Worley, C. C.; Zaggia, S.

    2015-08-01

    Context. The Gaia-ESO Survey (GES) is a large public spectroscopic survey at the European Southern Observatory Very Large Telescope. Aims: A key aim is to provide precise radial velocities (RVs) and projected equatorial velocities (vsini) for representative samples of Galactic stars, which will complement information obtained by the Gaia astrometry satellite. Methods: We present an analysis to empirically quantify the size and distribution of uncertainties in RV and vsini using spectra from repeated exposures of the same stars. Results: We show that the uncertainties vary as simple scaling functions of signal-to-noise ratio (S/N) and vsini, that the uncertainties become larger with increasing photospheric temperature, but that the dependence on stellar gravity, metallicity and age is weak. The underlying uncertainty distributions have extended tails that are better represented by Student's t-distributions than by normal distributions. Conclusions: Parametrised results are provided, which enable estimates of the RV precision for almost all GES measurements, and estimates of the vsini precision for stars in young clusters, as a function of S/N, vsini and stellar temperature. The precision of individual high S/N GES RV measurements is 0.22-0.26 km s-1, dependent on instrumental configuration. Based on observations collected with the FLAMES spectrograph at VLT/UT2 telescope (Paranal Observatory, ESO, Chile), for the Gaia- ESO Large Public Survey (188.B-3002).Full Table 2 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/580/A75

  6. A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-type complex oligosaccharide

    PubMed Central

    Higuchi, Yujiro; Yoshinaga, Sho; Yoritsune, Ken-ichi; Tateno, Hiroaki; Hirabayashi, Jun; Nakakita, Shin-ichi; Kanekiyo, Miho; Kakuta, Yoshimitsu; Takegawa, Kaoru

    2016-01-01

    Pyruvylation onto the terminus of oligosaccharide, widely seen from prokaryote to eukaryote, confers negative charges on the cell surface and seems to be functionally similar to sialylation, which is found at the end of human-type complex oligosaccharide. However, detailed molecular mechanisms underlying pyruvylation have not been clarified well. Here, we first determined the crystal structure of fission yeast pyruvyltransferase Pvg1p at a resolution of 2.46 Å. Subsequently, by combining molecular modeling with mutational analysis of active site residues, we obtained a Pvg1p mutant (Pvg1pH168C) that efficiently transferred pyruvyl moiety onto a human-type complex glycopeptide. The resultant pyruvylated human-type complex glycopeptide recognized similar lectins on lectin arrays as the α2,6-sialyl glycopeptides. This newly-generated pyruvylation of human-type complex oligosaccharides would provide a novel method for glyco-bioengineering. PMID:27194449

  7. Characterization of acetylated and acetolyzed glycoprotein high-mannose core oligosaccharides by fast-atom-bombardment mass spectrometry.

    PubMed Central

    Tsai, P K; Dell, A; Ballou, C E

    1986-01-01

    Fast-atom-bombardment mass spectrometry has been applied to acetylated neutral and phosphorylated oligosaccharides from yeast glycoproteins and to their acetolysis products. Although acetylation increases the sample molecular weight and the complexity of the spectra, it also enhances the sensitivity of detection, is applicable to samples that contain salt, and is especially useful for analysis of phosphorylated derivatives. Acetylation by trifluoroacetic anhydride/glacial acetic acid is particularly convenient and can be done rapidly on a small amount of material. Acetolysis by acetic anhydride/glacial acetic acid/H2SO4 is done on the acetylated oligosaccharides, and the acetylated fragments are recovered by solvent extraction and immediately subjected to mass spectrometry. The methodology allows molecular weight determinations and sequence analysis by acetolysis to be carried out on a few micrograms of isolated oligosaccharide in a few hours. PMID:3459167

  8. C-Glycosyl Analogs of Oligosaccharides

    NASA Astrophysics Data System (ADS)

    Vauzeilles, Boris; Urban, Dominique; Doisneau, Gilles; Beau, Jean-Marie

    This chapter covers the synthesis of a large collection of "C-oligosaccharides ", synthetic analogs of naturally occurring oligosaccharides in which a carbon atom replaces the anomeric, interglycosidic oxygen atom. These non-natural constructs are stable to chemical and enzymatic degradation, and are primarily devised to probe carbohydrate-based biological processes. These mainly target carbohydrate-protein interactions such as the modulation of glycoenzyme (glycosylhydrolases and transferases) activities or the design of ligands for lectin Carbohydrate Recognition Domains. The discussion is based on the key carbon-carbon bond assembling steps on carbohydrate templates: ionic (anionic and cationic chemistries, sigmatropic rearrangements) or radical assemblage, and olefin metathesis. Synthetic schemes in which at least one of the monosaccharide units is constructed by total synthesis or by cyclization of acyclic chiral chains are presented separately in a "partial de novo synthesis" section. The review also provides comments, when they are known, on the conformational and binding properties of these synthetic analogs, as well as their biological behavior when tested.

  9. Multifunctional fructans and raffinose family oligosaccharides

    PubMed Central

    den Ende, Wim Van

    2013-01-01

    Fructans and raffinose family oligosaccharides (RFOs) are the two most important classes of water-soluble carbohydrates in plants. Recent progress is summarized on their metabolism (and regulation) and on their functions in plants and in food (prebiotics, antioxidants). Interest has shifted from the classic inulin-type fructans to more complex fructans. Similarly, alternative RFOs were discovered next to the classic RFOs. Considerable progress has been made in the understanding of structure–function relationships among different kinds of plant fructan metabolizing enzymes. This helps to understand their evolution from (invertase) ancestors, and the evolution and role of so-called “defective invertases.” Both fructans and RFOs can act as reserve carbohydrates, membrane stabilizers and stress tolerance mediators. Fructan metabolism can also play a role in osmoregulation (e.g., flower opening) and source–sink relationships. Here, two novel emerging roles are highlighted. First, fructans and RFOs may contribute to overall cellular reactive oxygen species (ROS) homeostasis by specific ROS scavenging processes in the vicinity of organellar membranes (e.g., vacuole, chloroplasts). Second, it is hypothesized that small fructans and RFOs act as phloem-mobile signaling compounds under stress. It is speculated that such underlying antioxidant and oligosaccharide signaling mechanisms contribute to disease prevention in plants as well as in animals and in humans. PMID:23882273

  10. Structural analysis of the asparagine-linked oligosaccharides of cholinesterases. N-linked carbohydrates of cholinesterases

    SciTech Connect

    Saxena, A.; Doctor, B.P.

    1995-12-31

    Cholinesterases are serine esterases that hydrolyse choline esters faster than other substrates. They are highly glycosylated proteins with up to 24% of their molecular weight constituted of carbohydrates. Here we report the results of our studies on the glycosylation of fetal bovine serum acetylcholinesterase (FBS AChE) and horse serum butyrylcholinesterase (Eq BChE). Analysis of the monosaccharide content of the two enzymes indicated that Eq BChE contained 520 nmoles of monosaccharide/mg protein, as compared to 1290 nmoles/mg protein for Eq BChE. Both enzymes contained mannose, galactose, N-acetylglucosamine and sialic acid. Fucose was present in Eq BChE only. The structures of the two major oligosaccharides from FBS AChE and one major oligosaccharide from Eq BChE were determined and found to be very similar except that one of the oligosaccharides from FBS AChE contained a galactose alphal-3 galactose betal-4-determinant which has been identified as a potentially immunogenic determinant.

  11. Typing of Blood-Group Antigens on Neutral Oligosaccharides by Negative-Ion Electrospray Ionization Tandem Mass Spectrometry

    PubMed Central

    Zhang, Hongtao; Zhang, Shuang; Tao, Guanjun; Zhang, Yibing; Mulloy, Barbara; Zhan, Xiaobei; Chai, Wengang

    2013-01-01

    Blood-group antigens, such as those containing fucose and bearing the ABO(H)- and Lewis-type determinants expressed on the carbohydrate chains of glycoproteins and glycolipids, and also on unconjugated free oligosaccharides in human milk and other secretions, are associated with various biological functions. We have previously shown the utility of negative-ion electrospay ionization tandem mass spectrometry with collision-induced dissociation (ESI-CID-MS/MS) for typing of Lewis (Le) determinants, e.g. Lea, Lex, Leb, and Ley on neutral and sialylated oligosaccharide chains. In the present report we extended the strategy to characterization of blood-group A-, B- and H-determinants on type 1 and type 2, and also on type 4 globoside chains to provide a high sensitivity method for typing of all the major blood-group antigens, including the A, B, H, Lea, Lex, Leb, and Ley determinants, present in oligosaccharides. Using the principles established we identified two minor unknown oligosaccharide components present in the products of enzymatic synthesis by bacterial fermentation. We also demonstrated that the unique fragmentations derived from the D- and 0,2A-type cleavages observed in ESI-CID-MS/MS, which are important for assigning blood-group and chain types, only occur under the negative-ion conditions for reducing sugars but not for reduced alditols or under positive-ion conditions. PMID:23692402

  12. Structural characterization of neutral oligosaccharides with blood-group A and H activity isolated from bovine submaxillary mucin.

    PubMed Central

    Savage, A V; D'Arcy, S M; Donoghue, C M

    1991-01-01

    In this study we investigated the structures of 11 neutral oligosaccharides released from bovine submaxillary mucin by alkaline borohydride treatment and isolated by h.p.l.c. One hexa-, one penta-, three tetra-, four tri- and two di-saccharides containing core types 1, 2, 3 or 4 were obtained. We report their structures, determined by a combination of one- and two-dimensional 1H n.m.r. spectroscopy at 270 MHz and methylation analysis involving g.l.c.-m.s., along with their approximate molar ratios. Only three of these oligosaccharides have previously been reported in this source. Of the new oligosaccharides, one contains the blood-group-A antigenic determinant, two contain the blood-group-H type 2 determinant, while another contains the blood-group-H type 3 determinant. The oligosaccharide GlcNAc beta (1----6)[GlcNAc beta (1----3)]GalNAcol, although previously found as a core structure, has been isolated here as a novel trisaccharide. PMID:1718265

  13. Current Geoid Studies in Turkey and the need for Local High-Precision Astrogeodetic Geoid Determination Using CCD/Zenith Cameras

    NASA Astrophysics Data System (ADS)

    Halicioglu, K.; Ozener, H.; Deniz, R.

    2008-12-01

    During the last few years, the development of CCD image sensors at a reasonable price made the instruments of astrogeodetic observation possible to use for local high-precision astrogeodetic geoid and gravity field determination. Generally, the geoids of most European countries are in centimeter level accuracy except in mountainous regions. Turkish geoid also has accuracy problems in mountainous regions especially in the eastern parts of Anatolia and around boundaries of Marmara Sea. Studies performed in Europe in last decade indicate that, to reach the centimeter level accuracy in mountainous areas, astrogeodetic vertical deflections are more effective than gravimetric and other geoid determination methods. Turkey had started the geoid determination studies in 1976 with 13 absolute gravity points. Turkish National Fundamental Gravity Network (TNFGRN), densificated with 1st and 2nd order 66245 gravity points in Potsdam Gravity datum. TG03 has a final internal precision of 1 cm at the observation points and the external accuracy is within decimeter level. High precision in astrogeodetic geoid determination techniques are scarcely published by some universities around Europe using CCD/Zenith cameras. There are various zenith camera systems developed as state-of- art instrumentations using both CCD sensors for imaging stellar objects and GPS receivers for ellipsoidal coordinates, in order to determine the direction of the plumb line. These systems are designed and tested where conventional techniques are not sufficient. In this study, increasing accuracy of Turkish geoid is subjected to using CCD/Zenith cameras in the province of Istanbul. The planning test area is going to use the data available on the GPS/Leveling geoid of Istanbul and produce astrogeodetic data on a profile starting from the north shore of Marmara region, passing through the Marmara Sea to the south. The astrogeodetic instruments will be designed for engineering studies that are needed to determine

  14. Transcriptional response of HT-29 intestinal epithelial cells to human and bovine milk oligosaccharides.

    PubMed

    Lane, Jonathan A; O'Callaghan, John; Carrington, Stephen D; Hickey, Rita M

    2013-12-01

    Human milk oligosaccharides (HMO) have been shown to interact directly with immune cells. However, large quantities of HMO are required for intervention or clinical studies, but these are unavailable in most cases. In this respect, bovine milk is potentially an excellent source of commercially viable analogues of these unique molecules. In the present study, we compared the transcriptional response of colonic epithelial cells (HT-29) to the entire pool of HMO and bovine colostrum oligosaccharides (BCO) to determine whether the oligosaccharides from bovine milk had effects on gene expression that were similar to those of their human counterparts. Gene set enrichment analysis of the transcriptional data revealed that there were a number of similar biological processes that may be influenced by both treatments including a response to stimulus, signalling, locomotion, and multicellular, developmental and immune system processes. For a more detailed insight into the effects of milk oligosaccharides, the effect on the expression of immune system-associated glycogenes was chosen as a case study when performing validation studies. Glycogenes in the current context are genes that are directly or indirectly regulated in the presence of glycans and/or glycoconjugates. RT-PCR analysis revealed that HMO and BCO influenced the expression of cytokines (IL-1β, IL-8, colony-stimulating factor 2 (granulocyte-macrophage) (GM-CSF2), IL-17C and platelet factor 4 (PF4)), chemokines (chemokine (C-X-C motif) ligand 1 (CXCL1), chemokine (C-X-C motif) ligand 3 (CXCL3), chemokine (C-C motif) ligand 20 (CCL20), chemokine (C-X-C motif) ligand 2 (CXCL2), chemokine (C-X-C motif) ligand 6 (CXCL6), chemokine (C-C motif) ligand 5 (CCL5), chemokine (C-X3-C motif) ligand 1 (CX3CL1) and CXCL2) and cell surface receptors (interferon γ receptor 1 (IFNGR1), intercellular adhesion molecule-1 (ICAM-1), intercellular adhesion molecule-2 (ICAM-2) and IL-10 receptor α (IL10RA)). The present study suggests

  15. Transcriptional response of HT-29 intestinal epithelial cells to human and bovine milk oligosaccharides.

    PubMed

    Lane, Jonathan A; O'Callaghan, John; Carrington, Stephen D; Hickey, Rita M

    2013-12-01

    Human milk oligosaccharides (HMO) have been shown to interact directly with immune cells. However, large quantities of HMO are required for intervention or clinical studies, but these are unavailable in most cases. In this respect, bovine milk is potentially an excellent source of commercially viable analogues of these unique molecules. In the present study, we compared the transcriptional response of colonic epithelial cells (HT-29) to the entire pool of HMO and bovine colostrum oligosaccharides (BCO) to determine whether the oligosaccharides from bovine milk had effects on gene expression that were similar to those of their human counterparts. Gene set enrichment analysis of the transcriptional data revealed that there were a number of similar biological processes that may be influenced by both treatments including a response to stimulus, signalling, locomotion, and multicellular, developmental and immune system processes. For a more detailed insight into the effects of milk oligosaccharides, the effect on the expression of immune system-associated glycogenes was chosen as a case study when performing validation studies. Glycogenes in the current context are genes that are directly or indirectly regulated in the presence of glycans and/or glycoconjugates. RT-PCR analysis revealed that HMO and BCO influenced the expression of cytokines (IL-1β, IL-8, colony-stimulating factor 2 (granulocyte-macrophage) (GM-CSF2), IL-17C and platelet factor 4 (PF4)), chemokines (chemokine (C-X-C motif) ligand 1 (CXCL1), chemokine (C-X-C motif) ligand 3 (CXCL3), chemokine (C-C motif) ligand 20 (CCL20), chemokine (C-X-C motif) ligand 2 (CXCL2), chemokine (C-X-C motif) ligand 6 (CXCL6), chemokine (C-C motif) ligand 5 (CCL5), chemokine (C-X3-C motif) ligand 1 (CX3CL1) and CXCL2) and cell surface receptors (interferon γ receptor 1 (IFNGR1), intercellular adhesion molecule-1 (ICAM-1), intercellular adhesion molecule-2 (ICAM-2) and IL-10 receptor α (IL10RA)). The present study suggests

  16. Chemical characterization of the oligosaccharides in beluga (Delphinapterus leucas) and Minke whale (Balaenoptera acutorostrata) milk.

    PubMed

    Urashima, Tadasu; Sato, Harumi; Munakata, Jiro; Nakamura, Tadashi; Arai, Ikichi; Saito, Tadao; Tetsuka, Masafumi; Fukui, Yutaka; Ishikawa, Hajime; Lydersen, Christian; Kovacs, Kit M

    2002-07-01

    Carbohydrates were extracted from the milk of a beluga, Delphinopterus leucas (family Odontoceti), and two Minke whales, Balaenoptera acutorostrata (Family Mysticeti), sampled late in their respective lactation periods. Free oligosaccharides were separated by gel filtration and then neutral oligosaccharides were purified by preparative thin layer chromatography and gel filtration, while acidic oligosaccharides were purified by ion-exchange chromatography, gel filtration and high performance liquid chromatography (HPLC). Their structures were determined by 1H-NMR. In one of the Minke whale milk samples, lactose was a dominant saccharide, with Fuc(alpha1-2)Gal(beta1-4)Glc(2'-fucosyllactose), Gal(beta1-4)GlcNAc(beta1-3)Gal(beta1-4)Glc(lacto-N-neotetraose), GalNAc(alpha1-3)[Fuc(alpha1-2)]Gal(beta1-4)Glc(A-tetrasaccharide), Gal(beta1-4)GlcNAc(beta1-3)Gal(beta1-4)GlcNAc(beta1-3)Gal(beta1-4)Glc (para lacto-N-neohexaose), Neu5Ac(alpha2-3)Gal(beta1-4)GlcNAc(beta1-3)Gal(beta1-4)Glc (sialyl lacto-N-neotetraose), Neu5Ac(alpha2-6)Gal(beta1-4)GlcNAc(beta1-3)Gal(beta1-4)Glc (LST c) and Neu5Ac(alpha2-3)Gal(beta1-4)GlcNAc(beta1-3)Gal(beta1-4)GlcNAc(beta1-3)Gal(beta1-4)Glc (sialyl para lacto-N-neohexaose) also being found in the milk. The second Minke whale sample contained similar amounts of lactose, 2'-fucosyllactose and A-tetrasaccharide, but no free sialyl oligosaccharides. Sialyl lacto-N-neotetraose and sialyl para lacto-N-neohexaose are novel oligosaccharides which have not been previously reported from any mammalian milk or colostrum. These and other oligosaccharides of Minke whale milk may have biological significance as anti-infection factors, protecting the suckling young against bacteria and viruses. The lactose of Minke whale milk could be a source of energy for them. The beluga whale milk contained trace amounts of Neu5Ac(alpha2-3)Gal(beta1-4)Glc(3'-N-acetylneuraminyllactose), but the question of whether it contained free lactose could not be clarified. Therefore

  17. SAR Interferometry and Precise Leveling for the Determination of Vertical Displacements in the Upper Rhine Graben Area, Southwest Germany

    NASA Astrophysics Data System (ADS)

    Fuhrmann, T.; Schenk, A.; Westerhaus, M.; Zippelt, K.; Heck, B.

    2013-12-01

    The PS-InSAR (Persistent Scatterer SAR Interferometry) method and precise levelings provide a unique database to detect recent displacements of the Earth's surface. Data of both measurement techniques are analyzed at Geodetic Institute, Karlsruhe Institute of Technology, in order to gain detailed insight into the velocity field of the Upper Rhine Graben (URG). As central and most prominent segment of the European Cenozoic rift system, the seismically and tectonically active Rhine Graben is of steady geo-scientific interest. In the last decades, the URG is characterized by small tectonic movements (< 1mm/a), but an extensive use of its geopotentials (mining, groundwater usage, oil extraction, geothermal energy) inducing larger surface displacements. To assess the geohazards in the URG area, we aim to provide a map of the current 3D surface displacements with high precision and high spatial resolution. The InSAR and leveling data, and the location of permanent GNSS sites primarily analyzed for the horizontal velocity field, are displayed in Fig. 1. Precise levelings have been carried out by the surveying authorities of Germany, France and Switzerland over the last 100 years building a network of leveling lines. A kinematic network adjustment is applied on the leveling data, providing an accurate solution for vertical displacement rates with accuracies of 0.2 to 0.4 mm/a. The biggest disadvantage of the leveling database is the sparse spatial distribution of the measurement points. Therefore, PS-InSAR is used to significantly increase the number of points within the leveling loops. To obtain a high accuracy for line of sight displacement rates, ERS-1/2 and Envisat data from ascending and descending orbits covering a period from 1992 to 2000 and 2002 to 2010, resp., are processed using StaMPS (Stanford Method for Persistent Scatterers). As the tectonic displacements cover a large area, the separation of atmospheric effects and orbit errors plays an important role in

  18. LC-MS n Analysis of Isomeric Chondroitin Sulfate Oligosaccharides Using a Chemical Derivatization Strategy

    NASA Astrophysics Data System (ADS)

    Huang, Rongrong; Pomin, Vitor H.; Sharp, Joshua S.

    2011-09-01

    Improved methods for structural analyses of glycosaminoglycans (GAGs) are required to understand their functional roles in various biological processes. Major challenges in structural characterization of complex GAG oligosaccharides using liquid chromatography-mass spectrometry (LC-MS) include the accurate determination of the patterns of sulfation due to gas-phase losses of the sulfate groups upon collisional activation and inefficient on-line separation of positional sulfation isomers prior to MS/MS analyses. Here, a sequential chemical derivatization procedure including permethylation, desulfation, and acetylation was demonstrated to enable both on-line LC separation of isomeric mixtures of chondroitin sulfate (CS) oligosaccharides and accurate determination of sites of sulfation by MS n . The derivatized oligosaccharides have sulfate groups replaced with acetyl groups, which are sufficiently stable to survive MS n fragmentation and reflect the original sulfation patterns. A standard reversed-phase LC-MS system with a capillary C18 column was used for separation, and MS n experiments using collision-induced dissociation (CID) were performed. Our results indicate that the combination of this derivatization strategy and MS n methodology enables accurate identification of the sulfation isomers of CS hexasaccharides with either saturated or unsaturated nonreducing ends. Moreover, derivatized CS hexasaccharide isomer mixtures become separable by LC-MS method due to different positions of acetyl modifications.

  19. Precision determination of the πN scattering lengths and the charged πNN coupling constant

    NASA Astrophysics Data System (ADS)

    Ericson, T. E. O.; Loiseau, B.; Thomas, A. W.

    2000-01-01

    We critically evaluate the isovector GMO sumrule for the charged πNN coupling constant using recent precision data from π-p and π-d atoms and with careful attention to systematic errors. From the π-d scattering length we deduce the pion-proton scattering lengths 1/2(aπ-p + aπ-n) = (-20 +/- 6(statistic)+/-10 (systematic) .10-4m-1πc and 1/2(aπ-p - aπ-n) = (903 +/- 14) . 10-4m-1πc. From this a direct evaluation gives g2c(GMO)/4π = 14.20 +/- 0.07 (statistic)+/-0.13(systematic) or f2c/4π = 0.0786 +/- 0.0008.

  20. Characterization of the oligosaccharides of plasma sex hormone binding globulin from noncirrhotic alcoholic patients.

    PubMed

    Valladares, L; Erices, A; Lioi, X; Iturriaga, H

    2000-05-01

    In previous reports we have demonstrated high plasma levels of sex hormone-binding globulin (SHBG) in asymptomatic alcoholic men. In the present work the physicochemical properties of SHBG from plasma of noncirrhotic alcoholic patients have been further compared with SHBG of control subjects. Steroid binding to SHBG was similar for the two groups: alcoholic men, K(d) of 0.62 +/- 0.07 nM and control individuals, K(d) of 0.70 +/- 0.10 nM. The structure of oligosaccharides attached to SHBG from controls and alcoholic men were determined by using serial chromatography. Our data indicated that 7% of SHBG of control individuals was not retarded by the Con-A column, whereas approximately 30% of SHBG of alcoholic men eluted in the void volume of Con A. Approximately 46% of SHBG of alcoholics applied to Con A, possessed biantennary complex oligosaccharides, as indicated by the fact that it could be eluted with methyl-alpha-D-glucopyranoside and by its retention on wheat germ agglutinin; in contrast, when SHBG from control men was analyzed, approximately 51% was eluted with methyl-alpha-D-glucopyranoside. Approximately 9% of the biantennary complex oligosaccharides on SHBG of control men and none of those on SHBG from alcoholic men were fucosylated on the chitobiose core, as determined by chromatography on Lenn culinaris lectin. Galactosylated oligosaccharides were also present on the SHBG fraction as indicated by its interaction with Ricinus communis-I. Approximately 24% of SHBG of alcoholic men and 39% of those on SHBG from control individuals applied to Con-A were retained and could be eluted with methyl-alpha-D-mannopyranoside. Evidence based on the binding on mannoside-eluted SHBG to Con-A, wheat germ agglutinin, and R. communis-I indicated that at least the SHBG in this fraction, from alcoholics or controls, contained two glycosylation sites and that the sites were differentially glycosylated.

  1. Precise Tracking of the Magellan and Pioneer Venus Orbiters by Same-Beam Interferometry. Part 2: Orbit Determination Analysis

    NASA Technical Reports Server (NTRS)

    Folkner, W. M.; Border, J. S.; Nandi, S.; Zukor, K. S.

    1993-01-01

    A new radio metric positioning technique has demonstrated improved orbit determination accuracy for the Magellan and Pioneer Venus Orbiter orbiters. The new technique, known as Same-Beam Interferometry (SBI), is applicable to the positioning of multiple planetary rovers, landers, and orbiters which may simultaneously be observed in the same beamwidth of Earth-based radio antennas. Measurements of carrier phase are differenced between spacecraft and between receiving stations to determine the plane-of-sky components of the separation vector(s) between the spacecraft. The SBI measurements complement the information contained in line-of-sight Doppler measurements, leading to improved orbit determination accuracy. Orbit determination solutions have been obtained for a number of 48-hour data arcs using combinations of Doppler, differenced-Doppler, and SBI data acquired in the spring of 1991. Orbit determination accuracy is assessed by comparing orbit solutions from adjacent data arcs. The orbit solution differences are shown to agree with expected orbit determination uncertainties. The results from this demonstration show that the orbit determination accuracy for Magellan obtained by using Doppler plus SBI data is better than the accuracy achieved using Doppler plus differenced-Doppler by a factor of four and better than the accuracy achieved using only Doppler by a factor of eighteen. The orbit determination accuracy for Pioneer Venus Orbiter using Doppler plus SBI data is better than the accuracy using only Doppler data by 30 percent.

  2. High mannose oligosaccharide of phytohemagglutinin is attached to asparagine 12 and the modified oligosaccharide to asparagine 60. [Phaseolus vulgaris

    SciTech Connect

    Sturm, A.; Chrispeels, M.J.

    1986-05-01

    Phytohemagglutinin, the lectin of the common bean Phaseolus vulgaris, has a high mannose and a modified (fucosylated) oligosaccharide on each polypeptide. Fractionation by high performance liquid chromatography of tryptic digests of (/sup 3/H)fucose or (/sup 3/H)glucosamine labeled phytohemagglutinin, followed by amino acid sequencing of the isolated glycopeptides, shows that the high mannose oligosaccharide is attached to Asn/sup 12/ and the modified oligosaccharide to Asn /sup 60/ of the protein. In animal glycoproteins, high mannose chains are rarely found at the N-terminal side of complex chains.

  3. The importance of precision radar tracking data for the determination of density and winds from the high-altitude inflatable sphere

    NASA Technical Reports Server (NTRS)

    Schmidlin, F. J.; Michel, W. R.

    1985-01-01

    Analysis of inflatable sphere measurements obtained during the Energy Budget and MAP/WINE campaigns led to questions concerning the precision of the MPS-36 radar used for tracking the spheres; the compatibility of the sphere program with the MPS-36 radar tracking data; and the oversmoothing of derived parameters at high altitudes. Simulations, with winds having sinusoidal vertical wavelengths, were done with the sphere program (HIROBIN) to determine the resolving capability of various filters. It is concluded that given a precision radar and a perfectly performing sphere, the HIROBIN filters can be adjusted to provide small-scale perturbation information to 70 km (i.e., sinusoidal wavelengths of 2 km). It is recommended that the HIROBIN program be modified to enable it to use a variable length filter, that adjusts to fall velocity and accelerations to provide wind data with small perturbations.

  4. Superarmed and Superdisarmed Building Blocks in Expeditious Oligosaccharide Synthesis

    PubMed Central

    Premathilake, Hemali D.

    2011-01-01

    Traditional strategies for oligosaccharide synthesis often require extensive protecting and/or leaving group manipulations between each glycosylation step, thereby increasing the total number of synthetic steps while decreasing both the efficiency and yield. In contrast, expeditious strategies allow for the rapid chemical synthesis of complex carbohydrates by minimizing extraneous chemical manipulations. The armed–disarmed approach for chemoselective oligosaccharide synthesis is one such strategy that addresses these challenges. Herein, the significant improvements that have recently emerged in the area of chemoselective activation are discussed. These advancements have expanded the scope of the armed–disarmed methodology so that it can now be applied to a wider range of oligosaccharide sequences, in comparison to the original concept. Surveyed in this chapter are representative examples wherein these excellent innovations have already been applied to the synthesis of various oligosaccharides and glycoconjugates. PMID:21120713

  5. Synbiotic matrices derived from plant oligosaccharides and polysaccharides

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A porous synbiotic matrix was prepared by lyophilization of alginate and pectin or fructan oligosaccharides and polysaccharides cross-linked with calcium. These synbiotic matrices were excellent physical structures to support the growth of Lactobacillus acidophilus (1426) and Lactobacillus reuteri (...

  6. Differential effects of oligosaccharides on the hydration of simple cations

    NASA Astrophysics Data System (ADS)

    Eriksson, Mats; Lindhorst, Thisbe K.; Hartke, Bernd

    2008-03-01

    Changed ion hydration properties near surfaces, proteins, and deoxyribose nucleic acid have been reported before in the literature. In the present work, we extend this work to carbohydrates: We have performed classical-mechanical molecular dynamics simulations to study solvation properties of simple cations of biological relevance (Na+,K+,Mg2+,Ca2+) in explicit water, near single and multiple oligosaccharides as glycocalyx models. We find that our oligosaccharides prefer direct contact with K+ over Na+, but that the Na+ contacts are longer lived. These interactions also lead to strong but short-lived changes in oligosaccharide conformations, with oligosaccharides wrapping around K+ with multiple contacts. These findings may have implications for current hypotheses on glycocalyx functions.

  7. Applications of Mass Spectrometry to Structural Analysis of Marine Oligosaccharides

    PubMed Central

    Lang, Yinzhi; Zhao, Xia; Liu, Lili; Yu, Guangli

    2014-01-01

    Marine oligosaccharides have attracted increasing attention recently in developing potential drugs and biomaterials for their particular physical and chemical properties. However, the composition and sequence analysis of marine oligosaccharides are very challenging for their structural complexity and heterogeneity. Mass spectrometry (MS) has become an important technique for carbohydrate analysis by providing more detailed structural information, including molecular mass, sugar constituent, sequence, inter-residue linkage position and substitution pattern. This paper provides an overview of the structural analysis based on MS approaches in marine oligosaccharides, which are derived from some biologically important marine polysaccharides, including agaran, carrageenan, alginate, sulfated fucan, chitosan, glycosaminoglycan (GAG) and GAG-like polysaccharides. Applications of electrospray ionization mass spectrometry (ESI-MS) are mainly presented and the general applications of matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) are also outlined. Some technical challenges in the structural analysis of marine oligosaccharides by MS have also been pointed out. PMID:24983643

  8. Three-Dimensional Orientation Determination of Stationary Anisotropic Nanoparticles with Sub-Degree Precision under Total Internal Reflection Scattering Microscopy

    SciTech Connect

    Marchuk, Kyle; Fang, Ning

    2013-11-13

    Single-particle and single-molecule orientation determination plays a vital role in deciphering nanoscale motion in complex environments. Previous attempts to determine the absolute three-dimensional orientation of anisotropic particles rely on subjective pattern matching and are inherently plagued by high degrees of uncertainty. Herein, we describe a method utilizing total internal reflection scattering microscopy to determine the 3D orientation of gold nanorods with subdegree uncertainty. The method is then applied to the biologically relevant system of microtubule cargo loading. Finally, we demonstrate the method holds potential for identifying single particles versus proximate neighbors within the diffraction limited area.

  9. Precisely determined the surface displacement by the ionospheric mitigation using the L-band SAR Interferometry over Mt.Baekdu

    NASA Astrophysics Data System (ADS)

    Lee, Won-Jin; Jung, Hyung-Sup; Park, Sun-Cheon; Lee, Duk Kee

    2016-04-01

    Mt. Baekdu (Changbaishan in Chinese) is located on the border between China and North Korea. It has recently attracted the attention of volcanic unrest during 2002-2005. Many researchers have applied geophysical approaches to detect magma system of beneath Mt.Baekdu such as leveling, Global Positioning System (GPS), gases analysis, seismic analysis, etc. Among them, deformation measuring instruments are important tool to evaluate for volcanism. In contrast to GPS or other deformation measuring instruments, Synthetic Aperture Radar Interferometry (InSAR) has provided high resolution of 2-D surface displacement from remote sensed data. However, Mt. Baekdu area has disturbed by decorrelation on interferogram because of wide vegetation coverage. To overcome this limitation, L-band system of long wavelength is more effective to detect surface deformation. In spite of this advantage, L-band can surfer from more severe ionospheric phase distortions than X- or C- band system because ionospheric phase distortions are inverse proportion to the radar frequency. Recently, Multiple Aperture Interferometry (MAI) based ionospheric phase distortions mitigation method have proposed and investigated. We have applied this technique to the Mt.Baekdu area to measure surface deformation precisely using L-band Advanced Land Observing Satellite-1(ALOS-1) Phased Array type L-band Synthetic Aperture Radar(PALSAR) data acquiring from 2006 to 2011.

  10. Precise determination of nonlinear function of ion mobility for explosives and drugs at high electric fields for microchip FAIMS.

    PubMed

    Guo, Dapeng; Wang, Yonghuan; Li, Lingfeng; Wang, Xiaozhi; Luo, Jikui

    2015-01-01

    High-field asymmetric waveform ion mobility spectrometry (FAIMS) separates ions by utilizing the characteristics of nonlinear ion mobility at high and low electric fields. Accurate ion discrimination depends on the precise solution of nonlinear relationships and is essential for accurate identification of ion species for applications. So far, all the nonlinear relationships of ion mobility obtained are based at low electric fields (E/N <65 Td). Microchip FAIMS (μ-FAIMS) with small dimensions has high electric field up to E/N = 250 Td, making the approximation methods and conclusions for nonlinear relationships inappropriate for these systems. In this paper, we deduced nonlinear functions based on the first principle and a general model. Furthermore we considered the hydrodynamics of gas flow through microchannels. We then calculated the specific alpha coefficients for cocaine, morphine, HMX, TNT and RDX, respectively, based on their FAIMS spectra measured by μ-FAIMS system at ultra-high fields up to 250 Td. The results show that there is no difference in nonlinear alpha functions obtained by the approximation and new method at low field (<120 Td), but the error induced by using approximation method increases monotonically with the increase in field, and could be as much as 30% at a field of 250 Td.

  11. Fluorographic detection of tritiated glycopeptides and oligosaccharides separated on polyacrylamide gels: analysis of glycans from Dictyostelium discoideum glycoproteins

    SciTech Connect

    Prem Das, O.; Henderson, E.J.

    1986-11-01

    Previous workers have shown that oligosaccharides and glycopeptides can be separated by electrophoresis in buffers containing borate ions. However, normal fluorography of tritium-labeled structures cannot be performed because the glycans are soluble and can diffuse during equilibration with scintillants. This problem has been circumvented by equilibration of the gel with 2,5-diphenyloxazole (PPO) prior to electrophoresis. The presence of PPO in the gel during electrophoresis does not alter mobility of the glycopeptides and oligosaccharides. After electrophoresis, the gel is simply dried and fluorography performed. This allows sensitive and precise comparisons of labeled samples in parallel lanes of a slab gel and, since mobilities are highly reproducible, between different gels. The procedure is preparative in that after fluorography the gel bands can be quantitatively eluted for further study, without any apparent modification by the procedure. In this report, the procedure is illustrated by fractionation of both neutral and anionic glycopeptides produced by the cellular slime mold Dictyostelium discoideum.

  12. Deproteinated palm kernel cake-derived oligosaccharides: A preliminary study

    NASA Astrophysics Data System (ADS)

    Fan, Suet Pin; Chia, Chin Hua; Fang, Zhen; Zakaria, Sarani; Chee, Kah Leong

    2014-09-01

    Preliminary study on microwave-assisted hydrolysis of deproteinated palm kernel cake (DPKC) to produce oligosaccharides using succinic acid was performed. Three important factors, i.e., temperature, acid concentration and reaction time, were selected to carry out the hydrolysis processes. Results showed that the highest yield of DPKC-derived oligosaccharides can be obtained at a parameter 170 °C, 0.2 N SA and 20 min of reaction time.

  13. Evolved beta-galactosidases from Geobacillus stearothermophilus with improved transgalactosylation yield for galacto-oligosaccharide production.

    PubMed

    Placier, Gaël; Watzlawick, Hildegard; Rabiller, Claude; Mattes, Ralf

    2009-10-01

    A mutagenesis approach was applied to the beta-galactosidase BgaB from Geobacillus stearothermophilus KVE39 in order to improve its enzymatic transglycosylation of lactose into oligosaccharides. A simple screening strategy, which was based on the reduction of the hydrolysis of a potential transglycosylation product (lactosucrose), provided mutant enzymes possessing improved synthetic properties for the autocondensation product from nitrophenyl-galactoside and galacto-oligosaccharides (GOS) from lactose. The effects of the mutations on enzyme activity and kinetics were determined. An change of one arginine to lysine (R109K) increased the oligosaccharide yield compared to that for the wild-type BgaB. Subsequently, saturation mutagenesis at this position demonstrated that valine and tryptophan further increased the transglycosylation performance of BgaB. During the transglycosylation reaction with lactose of the evolved beta-galactosidases, a major trisaccharide was formed. Its structure was characterized as beta-D-galactopyranosyl-(1-->3)-beta-D-galactopyranosyl-(1-->4)-D-glucopyranoside (3'-galactosyl-lactose). At the lactose concentration of 18% (wt/vol), this trisaccharide was obtained in yields of 11.5% (wt/wt) with GP21 (BgaB R109K), 21% with GP637.2 (BgaB R109V), and only 2% with the wild-type BgaB enzyme. GP643.3 (BgaB R109W) was shown to be the most efficient mutant, with a 3'-galactosyl-lactose production of 23%. PMID:19666723

  14. Degradation of raffinose oligosaccharides in soymilk by immobilized alpha-galactosidase of Aspergillus oryzae.

    PubMed

    Kotiguda, Girigowda; Kapnoor, Shankar S; Kulkarni, Dhananjay; Mulimani, Veerappa H

    2007-09-01

    Alpha-galactosidase was immobilized in a mixture of k-carrageenan and locust bean gum. The properties of the free and immobilized enzyme were then determined. The optimum pH for both the soluble and immobilized enzyme was 4.8. The optimum temperature for the soluble enzymes was 50 degrees C, whereas that for the immobilized enzyme was 55 degrees C. The immobilized enzyme was used in batch, repeated batch, and continuous modes to degrade the raffinose-family sugars present in soymilk. Two hours of incubation with the free and immobilized alpha-galactosidases resulted in an 80% and 68% reduction in the raffinose oligosaccharides in the soymilk, respectively. In the repeated batch, a 73% reduction was obtained in the fourth cycle. A fluidized bed reactor was also designed to treat soymilk continuously and the performance of the immobilized alpha-galactosidase tested at different flow rates, resulting in a 90% reduction of raffinose-family oligosaccharides in the soymilk at a flow rate 40 ml/h. Therefore, the present study demonstrated that immobilized alpha-galactosidase in a continuous mode is efficient for reducing the oligosaccharides present in soymilk, which may be of considerable interest for industrial application.

  15. The Predominance of Type I Oligosaccharides Is a Feature Specific to Human Breast Milk123

    PubMed Central

    Urashima, Tadasu; Asakuma, Sadaki; Leo, Fiame; Fukuda, Kenji; Messer, Michael; Oftedal, Olav T.

    2012-01-01

    Human milk and colostrum contain ∼12–13 g/L and ∼22–24 g/L of oligosaccharides, respectively. The chemical structures of >100 human milk oligosaccharides (HMO) have been characterized to date. We determined the concentrations of 10 neutral and 9 acidic colostrum HMO collected during the first 3 d of lactation by using reverse phase HPLC after derivatization with 2-aminopyridine or 1-methyl-3-phenyl-5-pyrazolon. The predominant oligosaccharides were Fuc(α1-2)Gal(β1-4Glc (2′-FL), Fuc(α1-2)Gal(β1-3)GlcNAc(β1-3)Gal(β1-4)Glc (LNFP I), Fuc(α1-2)Gal(β1-3)[Fuc(α1-4)]GlcNAc(β1-3)Gal(β1-4)Glc (LNDFH I), and Gal(β1-3)GlcNAc(β1-3)Gal(β1-4)Glc (LNT), the concentration of each of which was ∼1–3 g/L. Because these HMO, other than 2′-FL, all contain the Lacto-N-biose type I structure [Gal(β1-3)GlcNAc], we conclude that HMO containing the type I structure predominate over those containing the N-acetyllactosamine type II structure [Gal(β1-4)GlcNAc]. This appears to be a feature that is specific to humans, because the milk and colostrum of other species, including apes and monkeys, either contain only type II oligosaccharides or type II predominate over type I. It is possible that type I HMO may have importance as substrates for beneficial bifidobacteria in breast-fed infants. The biological importance of type I HMO predominance warrants further study, both in relation to human health and to human evolution. PMID:22585927

  16. Oligosaccharide structure and amino acid sequence of the major glycopeptides of mature human. beta. -hexosaminidase

    SciTech Connect

    O'Dowd, B.F.; Cumming, D.A.; Gravel, R.A.; Mahuran, D.

    1988-07-12

    Human ..beta..-hexosaminidase is a lysosomal enzyme that hydrolyzes terminal N-acetylhexosamines from GM/sub 2/ ganglioside, oligosaccharides, and other carbohydrate-containing macromolecules. There are two major forms of hexosaminidase: hexosaminidase A, with the structure ..cap alpha..(..beta../sub a/..beta../sub b/), and hexosaminidase B, 2(..beta../sub a/..beta../sub b/). Like other lysosomal proteins, hexosaminidase is targeted to its destination via glycosylation and processing in the rough endoplasmic reticulum and Golgi apparatus. Phosphorylation of specific mannose residues allows binding of the protein to the phosphomannosyl receptor and transfer to the lysosome. In order to define the structure and placement of the oligosaccharides in mature hexosaminidase and thus identify candidate mannose 6-phosphate recipient sites, the major tryptic/chymotryptic glycopeptides from each isozyme were purified by reverse-phase high-performance liquid chromatography. Two major concanavalin A binding glycopeptides, localized to the ..beta../sub b/f chain, and one non concanavalin A binding glycopeptide, localized to the ..beta../sub a/ chain, were found associated with the ..beta..-subunit in both hexosaminidase A and hexosaminidase B. The oligosaccharide structures were determined by nuclear magnetic resonance spectrometry. The unique glycopeptide associated with the ..beta../sub a/ chain contained a single GlcNAc residue. Thus all three mature polypeptides comprising the ..cap alpha.. and ..beta.. subunits of hexosaminidase contain carbohydrate, the structures of which have the appearance of being partially degraded in the lysosome. In the ..cap alpha.. chain they found only one possible site for in vivo phosphorylation. In the ..beta.. it is unclear if only one or all three of the sites could have contained phosphate. However, mature placental hexosaminidase A and B can be rephosphorylated in vitro. This requires the presence of an oligosaccharide containing an ..cap

  17. Castanospermine inhibits the processing of the oligosaccharide portion of the influenza viral hemagglutinin.

    PubMed

    Pan, Y T; Hori, H; Saul, R; Sanford, B A; Molyneux, R J; Elbein, A D

    1983-08-01

    Castanospermine (1,6,7,8-tetrahydroxyoctahydroindolizine) is a plant alkaloid that inhibits alpha- and beta-glucosidase in fibroblast extracts [Saul, R., Chambers, J. P., Molyneux, R. J., & Elbein, A. D. (1983) Arch. Biochem. Biophys. 221, 593-597]. In the present study, castanospermine also proved to be a potent inhibitor of glycoprotein processing by virtue of the fact that it inhibits glucosidase I. Thus, when influenza virus was raised in the presence of castanospermine, at 10 micrograms/mL or higher, 80-90% of the viral glycopeptides were susceptible to the action of endoglucosaminidase H, whereas in the normal virus 70% of the glycopeptides are resistant to this enzyme. The major oligosaccharide released by endoglucosaminidase H from castanospermine-grown virus migrated like a hexose10GlcNac on a calibrated Bio-Gel P-4 column. This oligosaccharide was characterized as a Glc 3 Man 7 GlcNAc on the basis of various enzymatic treatments, as well as by methylation analysis of the [2-3H]-mannose-labeled or [6-3H]galactose-labeled oligosaccharide. The presence of three glucose residues in the oligosaccharide was also confirmed by periodate oxidation studies of the [6-3H]galactose-labeled hexose10GlcNAc. Castanospermine did not inhibit the incorporation of [3H]leucine or [14C]alanine into protein in MDCK cells at levels as high as 50 micrograms/mL. In addition, influenza virus produced in the presence of this alkaloid were fully infective and apparently produced in similar amounts to that of control cells, as determined by plaque counts. Castanospermine did, however, cause considerable changes in cell surface properties, since MDCK cells grown in 10 micrograms/mL castanospermine were able to bind twice as much [3H]concanavalin A as were control cells. PMID:6615812

  18. Beneficial effects of human milk oligosaccharides on gut microbiota.

    PubMed

    Musilova, S; Rada, V; Vlkova, E; Bunesova, V

    2014-09-01

    Human milk is the gold standard for nourishment of early infants because it contains a number of bioactive components, such as human milk oligosaccharides (HMOs). The high concentration and structural diversity of HMOs are unique to humans. HMOs are a group of complex and diverse glycans that are resistant to gastrointestinal digestion and reach the infant colon as the first prebiotics. N-acetyl-glucosamine containing oligosaccharides were first identified 50 years ago as the 'bifidus factor', a selective growth substrate for intestinal bifidobacteria, thus providing a conceptual basis for HMO-specific bifidogenic activity. Bifidobacterial species are the main utilisers of HMOs in the gastrointestinal tract and represent the dominant microbiota of breast-fed infants, and they may play an important role in maintaining the general health of newborn children. Oligosaccharides are also known to directly interact with the surface of pathogenic bacteria, and various oligosaccharides in milk are believed to inhibit the binding of pathogens and toxins to host cell receptors. Furthermore, HMOs are thought to contribute to the development of infant intestine and brain. Oligosaccharides currently added to infant formula are structurally different from the oligosaccharides naturally occurring in human milk and, therefore, they are unlikely to mimic some of the structure-specific effects. In this review, we describe how HMOs can modulate gut microbiota. This article summarises information up to date about the relationship between the intestinal microbiota and HMOs, and other possible indirect effects of HMOs on intestinal environment.

  19. A Glycomics Platform for the Analysis of Permethylated Oligosaccharide Alditols

    PubMed Central

    Costello, Catherine E.; Contado-Miller, Joy May; Cipollo, John F.

    2007-01-01

    This communication reports the development of an LC/MS platform for the analysis of permethylated oligosaccharide alditols that, for the first time, demonstrates routine online oligosaccharide isomer separation of these compounds prior to introduction into the mass spectrometer. The method leverages a high resolution liquid chromatography system with the superior fragmentation pattern characteristics of permethylated oligosaccharide alditols that are dissociated under low-energy collision conditions using quadrupole orthogonal time-of-flight (QoTOF) instrumentation and up to pseudo MS3 mass spectrometry. Glycoforms, including isomers, are readily identified and their structures assigned. The isomer-specific spectra include highly informative cross-ring and elimination fragments, branch position specific signatures and glycosidic bond fragments, thus facilitating linkage, branch and sequence assignment. The method is sensitive and can be applied using as little as 40 fmol of derivatized oligosaccharide. Because permethylation renders oligosaccharides nearly chemically equivalent in the mass spectrometer, the method is semi-quantitative and, in this regard, is comparable to methods reported using high field NMR and capillary electrophoresis. In this post - genomic age, the importance of glycosylation in biological processes has become clear. The nature of many of the important questions in glycomics is such that sample material is often extremely limited, thus necessitating the development of highly sensitive methods for rigorous structural assignment of the oligosaccharides in complex mixtures. The glycomics platform presented here fulfills these criteria and should lead to more facile glycomics analyses. PMID:17719235

  20. Precise oxygen and hydrogen isotope determination in nanoliter quantities of speleothem inclusion water by cavity ring-down spectroscopic techniques

    NASA Astrophysics Data System (ADS)

    Uemura, Ryu; Nakamoto, Masashi; Asami, Ryuji; Mishima, Satoru; Gibo, Masakazu; Masaka, Kosuke; Jin-Ping, Chen; Wu, Chung-Che; Chang, Yu-Wei; Shen, Chuan-Chou

    2016-01-01

    Speleothem inclusion-water isotope compositions are a promising new climatic proxy, but their applicability is limited by their low content in water and by analytical challenges. We have developed a precise and accurate isotopic technique that is based on cavity ring-down spectroscopy (CRDS). This method features a newly developed crushing apparatus, a refined sample extraction line, careful evaluation of the water/carbonate adsorption effect. After crushing chipped speleothem in a newly-developed crushing device, released inclusion water is purified and mixed with a limited amount of nitrogen gas in the extraction line for CRDS measurement. We have measured 50-260 nL of inclusion water from 77 to 286 mg of stalagmite deposits sampled from Gyokusen Cave, Okinawa Island, Japan. The small sample size requirement demonstrates that our analytical technique can offer high-resolution inclusion water-based paleoclimate reconstructions. The 1σ reproducibility for different stalagmites ranges from ±0.05 to 0.61‰ for δ18O and ±0.0 to 2.9‰ for δD. The δD vs. δ18O plot for inclusion water from modern stalagmites is consistent with the local meteoric water line. The 1000 ln α values based on calcite and fluid inclusion measurements from decades-old stalagmites are in agreement with the data from present-day farmed calcite experiment. Combination of coeval carbonate and fluid inclusion data suggests that past temperatures at 9-10 thousand years ago (ka) and 26 ka were 3.4 ± 0.7 °C and 8.2 ± 2.4 °C colder than at present, respectively.

  1. Ozone column density determination from direct irradiance measurements in the ultraviolet performed by a four-channel precision filter radiometer.

    PubMed

    Ingold, T; Mätzler, C; Wehrli, C; Heimo, A; Kämpfer, N; Philipona, R

    2001-04-20

    Ultraviolet light was measured at four channels (305, 311, 318, and 332 nm) with a precision filter radiometer (UV-PFR) at Arosa, Switzerland (46.78 degrees , 9.68 degrees , 1850 m above sea level), within the instrument trial phase of a cooperative venture of the Swiss Meteorological Institute (MeteoSwiss) and the Physikalisch-Meteorologisches Observatorium Davos/World Radiation Center. We retrieved ozone-column density data from these direct relative irradiance measurements by adapting the Dobson standard method for all possible single-difference wavelength pairs and one double-difference pair (305/311 and 305/318) under conditions of cloud-free sky and of thin clouds (cloud optical depth <2.5 at 500 nm). All UV-PFR retrievals exhibited excellent agreement with those of collocated Dobson and Brewer spectrophotometers for data obtained during two months in 1999. Combining the results of the error analysis and the findings of the validation, we propose to retrieve ozone-column density by using the 305/311 single difference pair and the double-difference pair. Furthermore, combining both retrievals by building the ratio of ozone-column density yields information that is relevant to data quality control. Estimates of the 305/311 pair agree with measurements by the Dobson and Brewer instruments within 1% for both the mean and the standard deviation of the differences. For the double pair these values are in a range up to 1.6%. However, this pair is less sensitive to model errors. The retrieval performance is also consistent with satellite-based data from the Earth Probe Total Ozone Mapping Spectrometer (EP-TOMS) and the Global Ozone Monitoring Experiment instrument (GOME).

  2. Immersion transmission ellipsometry (ITE): a new method for the precise determination of the 3D indicatrix of thin films

    NASA Astrophysics Data System (ADS)

    Jung, C. C.; Stumpe, J.

    2005-02-01

    The new method of immersion transmission ellipsometry (ITE) [1] has been developed. It allows the highly accurate determination of the absolute three-dimensional (3D) refractive indices of anisotropic thin films. The method is combined with conventional ellipsometry in transmission and reflection, and the thickness determination of anisotropic films solely by optical methods also becomes more accurate. The method is applied to the determination of the 3D refractive indices of thin spin-coated films of an azobenzene-containing liquid-crystalline copolymer. The development of the anisotropy in these films by photo-orientation and subsequent annealing is demonstrated. Depending on the annealing temperature, oblate or prolate orders are generated.

  3. Verification on the use of the Inoue method for precisely determining glomerular filtration rate in Philippine pediatrics

    NASA Astrophysics Data System (ADS)

    Magcase, M. J. D. J.; Duyan, A. Q.; Carpio, J.; Carbonell, C. A.; Trono, J. D.

    2015-06-01

    The objective of this study is to validate the Inoue method so that it would be the preferential choice in determining glomerular filtration rate (GFR) in Philippine pediatrics. The study consisted of 36 patients ranging from ages 2 months to 19 years old. The subjects used were those who were previously subjected to in-vitro method. The scintigrams of the invitro method was obtained and processed for split percentage uptake and for parameters needed to obtain Inoue GFR. The result of this paper correlates the Inoue GFR and In-vitro method (r = 0.926). Thus, Inoue method is a viable, simple, and practical technique in determining GFR in pediatric patients.

  4. Automated gravimetric sample pretreatment using an industrial robot for the high-precision determination of plutonium by isotope dilution mass spectrometry.

    PubMed

    Surugaya, Naoki; Hiyama, Toshiaki; Watahiki, Masaru

    2008-06-01

    A robotized sample-preparation method for the determination of Pu, which is recovered by extraction reprocessing of spent nuclear fuel, by isotope dilution mass spectrometry (IDMS) is described. The automated system uses a six-axis industrial robot, whose motility is very fast, accurate, and flexible, installed in a glove box. The automation of the weighing and dilution steps enables operator-unattended sample pretreatment for the high-precision analysis of Pu in aqueous solutions. Using the developed system, the Pu concentration in a HNO(3) medium was successfully determined using a set of subsequent mass spectrometric measurements. The relative uncertainty in determining the Pu concentration by IDMS using this system was estimated to be less than 0.1% (k = 2), which is equal to that expected of a talented analyst. The operation time required was the same as that for a skilled operator.

  5. New Method for Determining Isotopic Values of Glutamic Acid and Phenylalanine for Estimation of Precise Trophic Position in Food Web Studies

    NASA Astrophysics Data System (ADS)

    Kamath, T.; Broek, T.; McCarthy, M.

    2012-12-01

    Compound Specific Isotope Analysis of Amino Acids (CSI-AA) has emerged as a highly precise new method of determining trophic levels of both aquatic and terrestrial organisms. Multiple studies have now shown that δ15N values for glutamic acid (Glu) and phenylalanine (Phe) can be coupled to provide extremely precise estimates of trophic position in diverse food web studies. The standard gas chromatography—isotope ratio mass spectrometer (GC-IRMS) approach is presently limited to a select number of labs since necessary equipment is both expensive and not widely accessible. Furthermore, typical GC-IRMS δ15N precision (±1‰) is significantly lower than usual bulk δ15N values (±0.1‰), thus presenting a considerable setback for precise trophic level calculations. In this study, we develop a new dual-column method to purify Glu and Phe using high performance liquid chromatography (HPLC). Phe is purified using an analytical scale reverse phase column embedded with anionic ion-pairing reagents and collected using automated fraction collection. Glu is separated from the non-polar amino acids using the same column and further purified using a hydrophilic interaction liquid chromatography (HILIC) cation and anion-exchange column and collected via automated fraction collection. Isotopic analysis of the purified AAs is then conducted on an elemental analyzer—isotope ratio mass spectrometer (EA-IRMS). As a test of this method, we present and compare the trophic position of five marine organisms—cyanobacteria, deep-sea bamboo coral, juvenile and adult white sea bass, and harbor seal, calculated using Glu and Phe δ15N values produced by both GC-IRMS and our HPLC-EA-IRMS approach. The preliminary results of this study suggest that the HPLC-EA-IRMS method is a viable alternative to GC-IRMS, which should allow accurate trophic position estimates to be made by more researchers using more readily available instrumentation.

  6. Determination of short-term error caused by the reference clock in precision time-interval measurement and generation

    NASA Astrophysics Data System (ADS)

    Kalisz, Jozef

    1988-06-01

    A simple analysis based on the randomized clock cycle T(o) yields a useful formula on its variance in terms of the Allan variance. The short-term uncertainty of the measured or generated time interval t is expressed by the standard deviation in an approximate form as a function of the Allen variance. The estimates obtained are useful for determining the measurement uncertainty of time intervals within the approximate range of 10 ms-100 s.

  7. Large-scale production of highly enriched 28Si for the precise determination of the Avogadro constant

    NASA Astrophysics Data System (ADS)

    Becker, P.; Schiel, D.; Pohl, H.-J.; Kaliteevski, A. K.; Godisov, O. N.; Churbanov, M. F.; Devyatykh, G. G.; Gusev, A. V.; Bulanov, A. D.; Adamchik, S. A.; Gavva, V. A.; Kovalev, I. D.; Abrosimov, N. V.; Hallmann-Seiffert, B.; Riemann, H.; Valkiers, S.; Taylor, P.; DeBièvre, P.; Dianov, E. M.

    2006-07-01

    An attempt is described to replace the present definition of the kilogram with the mass of a certain number of silicon atoms. A prerequisite for this is that the Avogadro constant, NA, is determined with a relative uncertainty of better than 2 × 10-8. For the determination, silicon crystals are used. However, the difficulty arising thereby is the measurement of the average molar mass of natural Si. Consequently, a worldwide collaboration has been launched to produce approximately a 5 kg 28Si single crystal with an enrichment factor greater than 99.985% and of sufficient chemical purity so that it can be used to determine NA with the targeted relative measurement uncertainty mentioned above. In the following, the first successful tests of all technological steps will be reported (enrichment of SiF4, distillation into silane and chemical purification, chemical vapour deposition of polycrystalline 28Si, floating zone growth of a dislocation-free single crystal) and new equipment for the production of high-purity 28Si with an enrichment of not less than 99.99% will be described. All steps are well defined by a Technical Road Map (TRM28) and all key results are measured by new mass spectrometric, IR spectroscopic and other chemical and physical methods, such as Hall effect, photoluminescence, laser scattering and x-ray topographic methods (TRM for Analytical Monitoring and Certification, TRM28-AMC). The initial enrichment of the gas is >0.999 95 and the depletion during the entire process is <0.000 05. The isotopic homogeneity is checked by natural Si crystal growth and does, in the enriched sphere, not exceed 5 × 10-10, relatively. The C content of the final material is less than 1015 atoms cm-3 and the specific resistance is 400-1000 Ω cm.

  8. In vitro fermentation of commercial α-gluco-oligosaccharide by faecal microbiota from lean and obese human subjects.

    PubMed

    Sarbini, Shahrul R; Kolida, Sofia; Gibson, Glenn R; Rastall, Robert A

    2013-06-01

    The fermentation selectivity of a commercial source of a-gluco-oligosaccharides (BioEcolians; Solabia) was investigated in vitro. Fermentation by faecal bacteria from four lean and four obese healthy adults was determined in anaerobic, pH-controlled faecal batch cultures. Inulin was used as a positive prebiotic control. Samples were obtained at 0, 10, 24 and 36 h for bacterial enumeration by fluorescent in situ hybridisation and SCFA analyses. Gas production during fermentation was investigated in non-pH-controlled batch cultures. a-Gluco-oligosaccharides significantly increased the Bifidobacterium sp. population compared with the control. Other bacterial groups enumerated were unaffected with the exception of an increase in the Bacteroides–Prevotella group and a decrease in Faecalibacterium prausnitzii on both a-gluco-oligosaccharides and inulin compared with baseline. An increase in acetate and propionate was seen on both substrates. The fermentation of a-gluco-oligosaccharides produced less total gas at a more gradual rate of production than inulin. Generally, substrates fermented with the obese microbiota produced similar results to the lean fermentation regarding bacteriology and metabolic activity. No significant difference at baseline (0 h) was detected between the lean and obese individuals in any of the faecal bacterial groups studied.

  9. Variable domain-linked oligosaccharides of a human monoclonal IgG: structure and influence on antigen binding.

    PubMed Central

    Leibiger, H; Wüstner, D; Stigler, R D; Marx, U

    1999-01-01

    The variable-domain-attached oligosaccharide side chains of a human IgG produced by a human-human-mouse heterohybridoma were analysed. In addition to the conserved N-glycosylation site at Asn-297, an N-glycosylation consensus sequence (Asn-Asn-Ser) is located at position 75 in the variable region of its heavy chain. The antibody was cleaved into its antigen-binding (Fab) and crystallizing fragments. The oligosaccharides of the Fab fragment were released by digestion with various endo- and exoglycosidases and analysed by anion-exchange chromatography and fluorophore-assisted carbohydrate electrophoresis. The predominant components were disialyl- bi-antennary and tetra-sialyl tetra-antennary complex carbohydrates. Of note is the presence in this human IgG of oligosaccharides containing N-glycolylneuraminic acid and N-acetylneuraminic acid in the ratio of 94:6. Furthermore, we determined N-acetylgalactosamine in the Fab fragment of this antibody, suggesting the presence of O-linked carbohydrates. A three-dimensional structure of the glycosylated variable (Fv) fragment was suggested using computer-assisted modelling. In addition, the influence of the Fv-associated oligosaccharides of the CBGA1 antibody on antigen binding was tested in several ELISA systems. Deglycosylation resulted in a decreased antigen-binding activity. PMID:10024532

  10. Specific asparagine-linked oligosaccharides are not required for certain neuron-neuron and neuron-Schwann cell interactions

    PubMed Central

    1986-01-01

    To determine whether specific asparagine-linked (N-linked) oligosaccharides present in cell surface glycoproteins are required for cell-cell interactions within the peripheral nervous system, we have used castanospermine to inhibit maturation of N-linked sugars in cell cultures of neurons or neurons plus Schwann cells. Maximally 10-15% of the N-linked oligosaccharides on neuronal proteins have normal structure when cells are cultured in the presence of 250 micrograms/ml castanospermine; the remaining oligosaccharides are present as immature carbohydrate chains not normally found in these glycoproteins. Although cultures were treated for 2 wk with castanospermine, cells always remained viable and appeared healthy. We have analyzed several biological responses of embryonic dorsal root ganglion neurons, with or without added purified populations of Schwann cells, in the presence of castanospermine. We have observed that a normal complement of mature, N- linked sugars are not required for neurite outgrowth, neuron-Schwann cell adhesion, neuron-induced Schwann cell proliferation, or ensheathment of neurites by Schwann cells. Treatment of neuronal cultures with castanospermine increases the propensity of neurites to fasciculate. Extracellular matrix deposition by Schwann cells and myelination of neurons by Schwann cells are greatly diminished in the presence of castanospermine as assayed by electron microscopy and immunocytochemistry, suggesting that specific N-linked oligosaccharides are required for the expression of these cellular functions. PMID:3522602

  11. Biomimetic oligosaccharide and peptide surfactant polymers designed for cardiovascular biomaterials

    NASA Astrophysics Data System (ADS)

    Ruegsegger, Mark Andrew

    A common problem associated with cardiovascular devices is surface induced thrombosis initiated by the rapid, non-specific adsorption of plasma proteins onto the biomaterial surface. Control of the initial protein adsorption is crucial to achieve the desired longevity of the implanted biomaterial. The cell membrane glycocalyx acts as a non-thrombogenic interface through passive (dense oligosaccharide structures) and active (ligand/receptor interactions) mechanisms. This thesis is designed to investigate biomimicry of the cell glycocalyx to minimize non-specific protein adsorption and promote specific ligand/receptor interactions. Biomimetic macromolecules were designed through the molecular-scale engineering of polymer surfactants, utilizing a poly(vinyl amine) (PVAm) backbone to which hydrophilic (dextran, maltose, peptide) and hydrophobic alkyl (hexanoyl or hexanal) chains are simultaneously attached. The structure was controlled through the molar feed ratio of hydrophobic-to-hydrophilic groups, which also provided control of the solution and surface-active properties. To mimic passive properties, a series of oligomaltose surfactants were synthesized with increasing saccharide length (n = 2, 7, 15 where n is number of glucose units) to investigate the effect of coating height on protein adsorption. The surfactants were characterized by infra red (IR) and nuclear magnetic resonance (NMR) spectroscopies for structural properties and atomic force microscopy (AFM) and contact angle goniometry for surface activity. Protein adsorption under dynamic flow (5 dyn/cm2) was reduced by 85%--95% over the bare hydrophobic substrate; platelet adhesion dropped by ˜80% compared to glass. Peptide ligands were incorporated into the oligosaccharide surfactant to promote functional activity of the passive coating. The surfactants were synthesized to contain 0%, 25%, 50%, 75%, and 100% peptide ligand density and were stable on hydrophobic surfaces. The peptide surface density was

  12. Application of scanning angle Raman spectroscopy for determining the location of buried polymer interfaces with tens of nanometer precision

    SciTech Connect

    Damin, Craig A.; Nguyen, Vy H. T.; Niyibizi, Auguste S.; Smith, Emily A.

    2015-02-11

    Near-infrared scanning angle (SA) Raman spectroscopy was utilized to determine the interface location in bilayer films (a stack of two polymer layers) of polystyrene (PS) and polycarbonate (PC). Finite-difference-time-domain (FDTD) calculations of the sum square electric field (SSEF) for films with total bilayer thicknesses of 1200–3600 nm were used to construct models for simultaneously measuring the film thickness and the location of the buried interface between the PS and PC layers. Samples with total thicknesses of 1320, 1890, 2300, and 2750 nm and varying PS/PC interface locations were analyzed using SA Raman spectroscopy. Comparing SA Raman spectroscopy and optical profilometry measurements, the average percent difference in the total bilayer thickness was 2.0% for films less than ~2300 nm thick. The average percent difference in the thickness of the PS layer, which reflects the interface location, was 2.5% when the PS layer was less than ~1800 nm. The SA Raman spectroscopy has been shown to be a viable, non-destructive method capable of determining the total bilayer thickness and buried interface location for bilayer samples consisting of thin polymer films with comparable indices of refraction.

  13. Application of scanning angle Raman spectroscopy for determining the location of buried polymer interfaces with tens of nanometer precision

    DOE PAGESBeta

    Damin, Craig A.; Nguyen, Vy H. T.; Niyibizi, Auguste S.; Smith, Emily A.

    2015-02-11

    Near-infrared scanning angle (SA) Raman spectroscopy was utilized to determine the interface location in bilayer films (a stack of two polymer layers) of polystyrene (PS) and polycarbonate (PC). Finite-difference-time-domain (FDTD) calculations of the sum square electric field (SSEF) for films with total bilayer thicknesses of 1200–3600 nm were used to construct models for simultaneously measuring the film thickness and the location of the buried interface between the PS and PC layers. Samples with total thicknesses of 1320, 1890, 2300, and 2750 nm and varying PS/PC interface locations were analyzed using SA Raman spectroscopy. Comparing SA Raman spectroscopy and optical profilometrymore » measurements, the average percent difference in the total bilayer thickness was 2.0% for films less than ~2300 nm thick. The average percent difference in the thickness of the PS layer, which reflects the interface location, was 2.5% when the PS layer was less than ~1800 nm. The SA Raman spectroscopy has been shown to be a viable, non-destructive method capable of determining the total bilayer thickness and buried interface location for bilayer samples consisting of thin polymer films with comparable indices of refraction.« less

  14. Precise leveling determination of surface uplift patterns at the New Hydraulic Fracturing Facility, Oak Ridge National Laboratory

    SciTech Connect

    Haase, C.S.; Stow, S.H.

    1988-05-01

    Surface uplift patterns were determined for five grout injections at the New Hydrofracture Facility (NHF) during the period July 1983 through January 1984. The uplift patterns are complex. In plan view, they are elliptical to almost circular and exhibit varying degrees of cross-sectional asymmetry with one side steeper than the other. The long axis of the ellipse is more or less parallel to geological strike. The uplift patterns vary in size, shape and asymmetry from injection to injection. The region of maximum uplift is typically offset with respect to the injection point, suggesting that most hydrofracture injections dip to the south-southeast. Approximately 40 to 60% of the uplift measured 5 days after an injection subsided within 30 to 45 days. In one case, all of the uplift subsided within 70 days of injection. Modeling of the uplift patterns by simple models, based on homogeneous, isotropic subsurface conditions, suggests that hydrofractures produced by the injections are either horizontal or have shallow dips to the south-southeast. Such orientations are consistent with the hydrofracture orientations determined by gamma-ray logging in observation wells surrounding the NHF site. 19 refs., 17 figs., 1 tab.

  15. Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire.

    PubMed

    Glanville, Jacob; Zhai, Wenwu; Berka, Jan; Telman, Dilduz; Huerta, Gabriella; Mehta, Gautam R; Ni, Irene; Mei, Li; Sundar, Purnima D; Day, Giles M R; Cox, David; Rajpal, Arvind; Pons, Jaume

    2009-12-01

    Antibody repertoire diversity, potentially as high as 10(11) unique molecules in a single individual, confounds characterization by conventional sequence analyses. In this study, we present a general method for assessing human antibody sequence diversity displayed on phage using massively parallel pyrosequencing, a novel application of Kabat column-labeled profile Hidden Markov Models, and translated complementarity determining region (CDR) capture-recapture analysis. Pyrosequencing of domain amplicon and RCA PCR products generated 1.5 x 10(6) reads, including more than 1.9 x 10(5) high quality, full-length sequences of antibody variable fragment (Fv) variable domains. Novel methods for germline and CDR classification and fine characterization of sequence diversity in the 6 CDRs are presented. Diverse germline contributions to the repertoire with random heavy and light chain pairing are observed. All germline families were found to be represented in 1.7 x 10(4) sequences obtained from repeated panning of the library. While the most variable CDR (CDR-H3) presents significant length and sequence variability, we find a substantial contribution to total diversity from somatically mutated germline encoded CDRs 1 and 2. Using a capture-recapture method, the total diversity of the antibody library obtained from a human donor Immunoglobulin M (IgM) pool was determined to be at least 3.5 x 10(10). The results provide insights into the role of IgM diversification, display library construction, and productive germline usages in antibody libraries and the humoral repertoire. PMID:19875695

  16. The precision of wet atmospheric deposition data from national atmospheric deposition program/national trends network sites determined with collocated samplers

    USGS Publications Warehouse

    Nilles, M.A.; Gordon, J.D.; Schroder, L.J.

    1994-01-01

    A collocated, wet-deposition sampler program has been operated since October 1988 by the U.S. Geological Survey to estimate the overall sampling precision of wet atmospheric deposition data collected at selected sites in the National Atmospheric Deposition Program and National Trends Network (NADP/NTN). A duplicate set of wet-deposition sampling instruments was installed adjacent to existing sampling instruments at four different NADP/NTN sites for each year of the study. Wet-deposition samples from collocated sites were collected and analysed using standard NADP/NTN procedures. Laboratory analyses included determinations of pH, specific conductance, and concentrations of major cations and anions. The estimates of precision included all variability in the data-collection system, from the point of sample collection through storage in the NADP/NTN database. Sampling precision was determined from the absolute value of differences in the analytical results for the paired samples in terms of median relative and absolute difference. The median relative difference for Mg2+, Na+, K+ and NH4+ concentration and deposition was quite variable between sites and exceeded 10% at most sites. Relative error for analytes whose concentrations typically approached laboratory method detection limits were greater than for analytes that did not typically approach detection limits. The median relative difference for SO42- and NO3- concentration, specific conductance, and sample volume at all sites was less than 7%. Precision for H+ concentration and deposition ranged from less than 10% at sites with typically high levels of H+ concentration to greater than 30% at sites with low H+ concentration. Median difference for analyte concentration and deposition was typically 1.5-2-times greater for samples collected during the winter than during other seasons at two northern sites. Likewise, the median relative difference in sample volume for winter samples was more than double the annual median

  17. Historical Aspects of Human Milk Oligosaccharides1234

    PubMed Central

    Kunz, Clemens

    2012-01-01

    This review focuses on important observations regarding infant health around 1900 when breastfeeding was not considered a matter of importance. The discovery of lactobacilli and bifidobacteria and their relevance for health and disease was an important milestone leading to a decrease in infant mortality in the first year of life. At the same time, pediatricians realized that the fecal composition of breast-fed and bottle-fed infants differed. Observations indicated that this difference is linked to milk composition, particularly due to the milk carbohydrate fraction. Circa 1930, a human milk carbohydrate fraction called gynolactose was identified. This was the starting point of research on human milk oligosaccharides (HMO). In the following years, the first HMO were identified and their functions investigated. Studies after 1950 focused on the identification of various HMO as the bifidus factor in human milk. In the following 30 years, a tremendous amount of research was done with regard to the characterization of individual HMO and HMO patterns in milk. In this short introduction to the history of HMO research, which ends circa 1980, some outstanding scientists in pediatrics and chemistry and their pioneering contributions to research in the field of HMO are presented. PMID:22585922

  18. Electron Transfer Dissociation of Milk Oligosaccharides

    NASA Astrophysics Data System (ADS)

    Han, Liang; Costello, Catherine E.

    2011-06-01

    For structural identification of glycans, the classic collision-induced dissociation (CID) spectra are dominated by product ions that derived from glycosidic cleavages, which provide only sequence information. The peaks from cross-ring fragmentation are often absent or have very low abundances in such spectra. Electron transfer dissociation (ETD) is being applied to structural identification of carbohydrates for the first time, and results in some new and detailed information for glycan structural studies. A series of linear milk sugars was analyzed by a variety of fragmentation techniques such as MS/MS by CID and ETD, and MS3 by sequential CID/CID, CID/ETD, and ETD/CID. In CID spectra, the detected peaks were mainly generated via glycosidic cleavages. By comparison, ETD generated various types of abundant cross-ring cleavage ions. These complementary cross-ring cleavages clarified the different linkage types and branching patterns of the representative milk sugar samples. The utilization of different MS3 techniques made it possible to verify initial assignments and to detect the presence of multiple components in isobaric peaks. Fragment ion structures and pathways could be proposed to facilitate the interpretation of carbohydrate ETD spectra, and the main mechanisms were investigated. ETD should contribute substantially to confident structural analysis of a wide variety of oligosaccharides.

  19. Oligosaccharide synthesis by dextransucrase: new unconventional acceptors.

    PubMed

    Demuth, Kristin; Jördening, Hans Joachim; Buchholz, Klaus

    2002-11-01

    The acceptor reactions of dextransucrase offer the potential for a targeted synthesis of a wide range of di-, tri- and higher oligosaccharides by the transfer of a glucosyl group from sucrose to the acceptor. We here report on results which show that the synthetic potential of this enzyme is not restricted to 'normal' saccharides. Additionally functionalized saccharides, such as alditols, aldosuloses, sugar acids, alkyl saccharides, and glycals, and rather unconventional saccharides, such as fructose dianhydride, may also act as acceptors. Some of these acceptors even turned out to be relatively efficient: alpha-D-glucopyranosyl-(1-->5)-D-arabinonic acid, alpha-D-glucopyranosyl-(1-->4)-D-glucitol, alpha-D-glucopyranosyl-(1-->6)-D-glucitol, alpha-D-glucopyranosyl-(1-->6)-D-mannitol, alpha-D-fructofuranosyl-beta-D-fructofuranosyl-(1,2':2,3')-dianhydride, 1,5-anhydro-2-deoxy-D-arabino-hex-1-enitol ('D-glucal'), and may therefore be of interest for future applications of the dextransucrase acceptor reaction.

  20. Determining neutrino mass hierarchy by precise measurements of two delta m**2 in electron-neutrino and muon-neutrino disappearance experiments

    SciTech Connect

    Minakata, H.; Nunokawa, H.; Parke, Stephen J.; Zukanovich Funchal, R.; /Sao Paulo U.

    2006-09-01

    In this talk, the authors discuss the possibility of determining the neutrino mass hierarchy by comparing the two effective atmospheric neutrino mass squared differences measured, respectively, in electron, and in muon neutrino disappearance oscillation experiments. if the former, is larger (smaller) than the latter, the mass hierarchy is of normal (inverted) type. They consider two very high precision (a few per mil) measurements of such mass squared differences by the phase II of the T2K (Tokai-to-Kamioka) experiment and by the novel Moessbauer enhanced resonant {bar {nu}}{sub e} absorption technique. Under optimistic assumptions for the systematic errors of both measurements, they determine the region of sensitivities where the mass hierarchy can be distinguished. Due to the tight space limitation, they present only the general idea and show a few most important plots.

  1. Fructo-oligosaccharides in table grapes and response to storage.

    PubMed

    Blanch, María; Sanchez-Ballesta, María T; Escribano, María I; Merodio, Carmen

    2011-12-01

    Fructo-oligosaccharides (FOS) have been recognized as health food ingredients with a protective effect against environmental stresses in plants. We have analyzed the profiles of individual FOS in Cardinal table grape pulp, until now undetected, and quantified their changes in response to low temperature and high CO2 levels. FOS separation and quantification was carried out using anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD), and the glucose, fructose and sucrose content of the grapes was also determined. Five FOS were identified and quantified: 1-kestose, neokestose, nystose, nystose b and kestopentaose. While in non-treated table grapes the endogenous FOS remained at steady state levels during storage at 0°C, exposure to 20% CO2 for 3days significant increases the levels of 1-kestose and kestopentaose, members of the inulin series. Considering the competitive advantage afforded by CO2-treated grapes, this transitory FOS accumulation could provide protection against damage caused by low temperature storage. PMID:25212291

  2. Precision translator

    DOEpatents

    Reedy, R.P.; Crawford, D.W.

    1982-03-09

    A precision translator for focusing a beam of light on the end of a glass fiber which includes two turning fork-like members rigidly connected to each other. These members have two prongs each with its separation adjusted by a screw, thereby adjusting the orthogonal positioning of a glass fiber attached to one of the members. This translator is made of simple parts with capability to keep adjustment even in condition of rough handling.

  3. Precision translator

    DOEpatents

    Reedy, Robert P.; Crawford, Daniel W.

    1984-01-01

    A precision translator for focusing a beam of light on the end of a glass fiber which includes two turning fork-like members rigidly connected to each other. These members have two prongs each with its separation adjusted by a screw, thereby adjusting the orthogonal positioning of a glass fiber attached to one of the members. This translator is made of simple parts with capability to keep adjustment even in condition of rough handling.

  4. Precise Orbit Determination for GEOSAT Follow-On Using Satellite Laser Ranging Data and Intermission Altimeter Crossovers

    NASA Technical Reports Server (NTRS)

    Lemoine, F. G.; Rowlands, D. D.; Luthcke, S. B.; Zelensky, N. P.; Chinn, D. S.; Pavlis, D. E.; Marr, G. C.

    2001-01-01

    The U.S. Navy's GEOSAT Follow-On Spacecraft was launched on February 10, 1998 and the primary objective of the mission was to map the oceans using a radar altimeter. Following an extensive set of calibration campaigns in 1999 and 2000, the US Navy formally accepted delivery of the satellite on November 29, 2000. The spacecraft is tracked by satellite laser ranging (SLR) and Doppler (Tranet-style) beacons. Although a limited amount of GPS data were obtained, the primary mode of tracking remains satellite laser ranging. In this paper, we report on progress in orbit determination for GFO using GFO/GFO and TOPEX/GFO altimeter crossovers. We have tuned the nonconservative force model for GFO and the gravity model using SLR, Doppler and altimeter crossover data spanning over one year. Preliminary results show that the predicted radial orbit error from the gravity field covariance to 70x70 on GEOSAT was reduced from 2.6 cm in EGM96 to 1.9 cm with the addition of only five months of the GFO SLR and GFO/GFO crossover data. Further progress is possible with the addition of more data, particularly the TOPEX/GFO crossovers. We will evaluate the tuned GFO gravity model (a derivative of EGM96) using altimeter data from the GEOSAT mission. In January 2000, a limited quantity of GPS data were obtained. We will use these GPS data in conjunction with the SLR and altimeter crossover data obtained over the same time span to compute quasi-reduced dynamic orbits which will also aid in the evaluation of the tuned GFO geopotential model.

  5. Precise Determination of the Intensity of 226Ra Alpha Decay to the 186 keV Excited State

    SciTech Connect

    S.P. LaMont; R.J. Gehrke; S.E. Glover; R.H. Filby

    2001-04-01

    There is a significant discrepancy in the reported values for the emission probability of the 186 keV gamma-ray resulting from the alpha decay of 226 Ra to 186 keV excited state of 222 Rn. Published values fall in the range of 3.28 to 3.59 gamma-rays per 100 alpha-decays. An interesting observation is that the lower value, 3.28, is based on measuring the 186 keV gamma-ray intensity relative to the 226 Ra alpha-branch to the 186 keV level. The higher values, which are close to 3.59, are based on measuring the gamma-ray intensity from mass standards of 226 Ra that are traceable to the mass standards prepared by HÓNIGSCHMID in the early 1930''s. This discrepancy was resolved in this work by carefully measuring the 226 Ra alpha-branch intensities, then applying the theoretical E2 multipolarity internal conversion coefficient of 0.692±0.007 to calculate the 186 keV gamma-ray emission probability. The measured value for the alpha branch to the 186 keV excited state was (6.16±0.03)%, which gives a 186 keV gamma-ray emission probability of (3.64±0.04)%. This value is in excellent agreement with the most recently reported 186 keV gamma-ray emission probabilities determined using 226 Ra mass standards.

  6. Enzymatic degradation of oligosaccharides in pinto bean flour.

    PubMed

    Song, Danfeng; Chang, Sam K C

    2006-02-22

    The use of dry edible beans is limited due to the presence of flatulence factors, the raffinose oligosaccharides. Our objective was to investigate the process for the removal of oligosaccharides from pinto bean using enzymatic treatment and to compare it to removal by soaking and cooking methods. Crude enzyme preparation was produced by six fungal species on wheat bran- and okara-based substrates with soy tofu whey. The loss of raffinose oligosaccharides after soaking pinto beans for 16 h at the room temperature was 10%, after cooking for 90 min was 52%, and after autoclaving for 30 min was 58%. On the other hand, the treatment using crude alpha-galactosidase (60 U mL(-1)) produced by Aspergillus awamori NRRL 4869 from wheat bran-based substrate with soy tofu whey on pinto bean flour for 2 h completely hydrolyzed raffinose oligosaccharides. These results supported that the enzymatic treatment was the most effective among various processing methods tested for removing the raffinose oligosaccharides, and hence, crude alpha-galactosidases from fungi have potential use in the food industry.

  7. Enzymatic degradation of oligosaccharides in pinto bean flour.

    PubMed

    Song, Danfeng; Chang, Sam K C

    2006-02-22

    The use of dry edible beans is limited due to the presence of flatulence factors, the raffinose oligosaccharides. Our objective was to investigate the process for the removal of oligosaccharides from pinto bean using enzymatic treatment and to compare it to removal by soaking and cooking methods. Crude enzyme preparation was produced by six fungal species on wheat bran- and okara-based substrates with soy tofu whey. The loss of raffinose oligosaccharides after soaking pinto beans for 16 h at the room temperature was 10%, after cooking for 90 min was 52%, and after autoclaving for 30 min was 58%. On the other hand, the treatment using crude alpha-galactosidase (60 U mL(-1)) produced by Aspergillus awamori NRRL 4869 from wheat bran-based substrate with soy tofu whey on pinto bean flour for 2 h completely hydrolyzed raffinose oligosaccharides. These results supported that the enzymatic treatment was the most effective among various processing methods tested for removing the raffinose oligosaccharides, and hence, crude alpha-galactosidases from fungi have potential use in the food industry. PMID:16478251

  8. High-precision determination of the isotopic composition of dissolved iron in iron depleted seawater by double spike multicollector-ICPMS.

    PubMed

    Lacan, Francois; Radic, Amandine; Labatut, Marie; Jeandel, Catherine; Poitrasson, Franck; Sarthou, Geraldine; Pradoux, Catherine; Chmeleff, Jerome; Freydier, Remi

    2010-09-01

    This work demonstrates the feasibility of the measurement of the isotopic composition of dissolved iron in seawater for an iron concentration range, 0.05-1 nmol L(-1), allowing measurements in most oceanic waters, including Fe depleted waters of high nutrient low chlorophyll areas. It presents a detailed description of our previously published protocol, with significant improvements on detection limit and blank contribution. Iron is preconcentrated using a nitriloacetic acid superflow resin and purified using an AG 1-x4 anion exchange resin. The isotopic ratios are measured with a multicollector-inductively coupled plasma mass spectrometer (MC-ICPMS) Neptune, coupled with a desolvator (Aridus II or Apex-Q), using a (57)Fe-(58)Fe double spike mass bias correction. A Monte Carlo test shows that optimum precision is obtained for a double spike composed of approximately 50% (57)Fe and 50% (58)Fe and a sample to double spike quantity ratio of approximately 1. Total procedural yield is 91 +/- 25% (2SD, n = 55) for sample sizes from 20 to 2 L. The procedural blank ranges from 1.4 to 1.1 ng, for sample sizes ranging from 20 to 2 L, respectively, which, converted into Fe concentrations, corresponds to blank contributions of 0.001 and 0.010 nmol L(-1), respectively. Measurement precision determined from replicate measurements of seawater samples and standard solutions is 0.08 per thousand (delta(56)Fe, 2SD). The precision is sufficient to clearly detect and quantify isotopic variations in the oceans, which so far have been observed to span 2.5 per thousand and thus opens new perspectives to elucidate the oceanic iron cycle.

  9. A new method for precise determination of iron, zinc and cadmium stable isotope ratios in seawater by double-spike mass spectrometry.

    PubMed

    Conway, Tim M; Rosenberg, Angela D; Adkins, Jess F; John, Seth G

    2013-09-01

    The study of Fe, Zn and Cd stable isotopes (δ(56)Fe, δ(66)Zn and δ(114)Cd) in seawater is a new field, which promises to elucidate the marine cycling of these bioactive trace metals. However, the analytical challenges posed by the low concentration of these metals in seawater has meant that previous studies have typically required large sample volumes, highly limiting data collection in the oceans. Here, we present the first simultaneous method for the determination of these three isotope systems in seawater, using Nobias PA-1 chelating resin to extract metals from seawater, purification by anion exchange chromatography, and analysis by double spike MC-ICPMS. This method is designed for use on only a single litre of seawater and has blanks of 0.3, 0.06 and <0.03 ng for Fe, Zn and Cd respectively, representing a 1-20 fold reduction in sample size and a 4-130 decrease in blank compared to previously reported methods. The procedure yields data with high precision for all three elements (typically 0.02-0.2‰; 1σ internal precision), allowing us to distinguish natural variability in the oceans, which spans 1-3‰ for all three isotope systems. Simultaneous extraction and purification of three metals makes this method ideal for high-resolution, large-scale endeavours such as the GEOTRACES program.

  10. Hydrolysis of low-molecular-weight oligosaccharides and oligosaccharide alditols by pig intestinal sucrase/isomaltase and glucosidase/maltase.

    PubMed

    Hertel, S; Heinz, F; Vogel, M

    2000-06-30

    The ability of purified pig intestinal sucrase/isomaltase (SI; EC 3.2.1.10/48) and glucosidase/maltase (GM; EC 3.2.1.20) to hydrolyze di- and oligosaccharides consisting of D-glucose and D-fructose residues and the corresponding alditols was studied. The products, after incubation, reflect different binding patterns at both catalytic sites of SI. The active site of the sucrase subunit cleaves alpha,beta-(1-->2) glycosidic bonds, and only two monomer units of the substrates bind with favorable affinity. Oligosaccharides and reduced oligosaccharides containing alpha-(1--6) and alpha-(1-->1) glycosidic bonds are hydrolyzed by isomaltase, and for the active site of this subunit more than two subsites were postulated. Moreover, different binding sites for various aglycons seem to exist for isomaltase. Oligosaccharide alcohols are cleaved at lower rates if the reduced sugar residue occupies the aglycon binding site. GM also hydrolyzes alpha-(1-->1) linkages, but at a lower rate. The enzyme has the ability to bind compounds containing residues other than D-glucose. There are indications for similarities between GM and the isomaltase subunit of SI in the binding mode of oligosaccharides.

  11. Novel arabinan and galactan oligosaccharides from dicotyledonous plants

    PubMed Central

    Wefers, Daniel; Tyl, Catrin E.; Bunzel, Mirko

    2014-01-01

    Arabinans and galactans are neutral pectic side chains and an important part of the cell walls of dicotyledonous plants. To get a detailed insight into their fine structure, various oligosaccharides were isolated from quinoa, potato galactan, and sugar beet pulp after enzymatic treatment. LC-MS2 and one- and two-dimensional NMR spectroscopy were used for unambiguous structural characterization. It was demonstrated that arabinans contain β-(1→3)-linked arabinobiose as a side chain in quinoa seeds, while potato galactan was comprised of β-(1→4)-linked galactopyranoses which are interspersed with α-(1→4)-linked arabinopyranoses. Additionally, an oligosaccharide with two adjacent arabinofuranose units O2-substituted with two ferulic acid monomers was characterized. The isolated oligosaccharides gave further insight into the structures of pectic side chains and may have an impact on plant physiology and dietary fiber fermentation. PMID:25426490

  12. Novel arabinan and galactan oligosaccharides from dicotyledonous plants.

    PubMed

    Wefers, Daniel; Tyl, Catrin E; Bunzel, Mirko

    2014-01-01

    Arabinans and galactans are neutral pectic side chains and an important part of the cell walls of dicotyledonous plants. To get a detailed insight into their fine structure, various oligosaccharides were isolated from quinoa, potato galactan, and sugar beet pulp after enzymatic treatment. LC-MS(2) and one- and two-dimensional NMR spectroscopy were used for unambiguous structural characterization. It was demonstrated that arabinans contain β-(1→3)-linked arabinobiose as a side chain in quinoa seeds, while potato galactan was comprised of β-(1→4)-linked galactopyranoses which are interspersed with α-(1→4)-linked arabinopyranoses. Additionally, an oligosaccharide with two adjacent arabinofuranose units O2-substituted with two ferulic acid monomers was characterized. The isolated oligosaccharides gave further insight into the structures of pectic side chains and may have an impact on plant physiology and dietary fiber fermentation. PMID:25426490

  13. Novel arabinan and galactan oligosaccharides from dicotyledonous plants

    NASA Astrophysics Data System (ADS)

    Wefers, Daniel; Tyl, Catrin; Bunzel, Mirko

    2014-11-01

    Arabinans and galactans are neutral pectic side chains and an important part of the cell walls of dicotyledonous plants. To get a detailed insight into their fine structure, various oligosaccharides were isolated from quinoa, potato galactan, and sugar beet pulp after enzymatic treatment. LC-MS2 and one- and two-dimensional NMR spectroscopy were used for unambiguous structural characterization. It was demonstrated that arabinans contain β-(1→3)-linked arabinobiose as a side chain in quinoa seeds, while potato galactan was comprised of β-(1→4)-linked galactopyranoses which are interspersed with α-(1→4)-linked arabinopyranoses. Additionally, an oligosaccharide with two adjacent arabinofuranose units O2-substituted with two ferulic acid monomers was characterized. The isolated oligosaccharides gave further insight into the structures of pectic side chains and may have an impact on plant physiology and dietary fiber fermentation.

  14. Effect of N-acetylchito-oligosaccharides on activation of phagocytes.

    PubMed

    Suzuki, K; Tokoro, A; Okawa, Y; Suzuki, S; Suzuki, M

    1986-01-01

    Four N-acetylchito-oligosaccharides, from tetra-N-acetylchitotetraose (NACOS-4) to hepta-N-acetylchitoheptaose (NACOS-7), were found to increase the number of peritoneal exudate cells (PEC) in male BALB/c mice after 3 hr intraperitoneal administration of 50 mg/kg of each oligosaccharide. The number of attracted cells, consisting largely of polymorphonuclear leukocytes (PMN), was proportional to the molecular weights of the administered oligosaccharides, except for NACOS-7 which displayed the same activity as NACOS-6. In an in vitro chemotaxis assay using normal mouse leukocytes, it was found that NACOS-6 displayed stronger effects than muramyl dipeptide. The PEC from NACOS-6 treated mice showed a higher active oxygen-generating activity. PMN from normal mouse peripheral blood were also shown to have enhanced active oxygen-generating activity in vitro. PEC from NACOS-6 treated mice were shown to possess strong candidacidal activity in vitro.

  15. Precise Determination of the Strong Coupling Constant at NNLO in QCD from the Three-Jet Rate in Electron-Positron Annihilation at LEP

    SciTech Connect

    Dissertori, G.; Gehrmann-DeRidder, A.; Gehrmann, T.; Glover, E. W. N.; Heinrich, G.; Stenzel, H.

    2010-02-19

    We present the first determination of the strong coupling constant from the three-jet rate in e{sup +}e{sup -} annihilation at LEP, based on a next-to-next-to-leading-order (NNLO) perturbative QCD prediction. More precisely, we extract {alpha}{sub s}(M{sub Z}) by fitting perturbative QCD predictions at O({alpha}{sub s}{sup 3}) to data from the ALEPH experiment at LEP. Over a large range of the jet-resolution parameter y{sub cut}, this observable is characterized by small nonperturbative corrections and an excellent stability under renormalization scale variation. We find {alpha}{sub s}(M{sub Z})=0.1175+-0.0020(expt)+-0.0015(theor), which is more accurate than the values of {alpha}{sub s}(M{sub Z}) from e{sup +}e{sup -} event-shape data currently used in the world average.

  16. High Precision Determination of the β Decay Q(EC) Value of (11)C and Implications on the Tests of the Standard Model.

    PubMed

    Gulyuz, K; Bollen, G; Brodeur, M; Bryce, R A; Cooper, K; Eibach, M; Izzo, C; Kwan, E; Manukyan, K; Morrissey, D J; Naviliat-Cuncic, O; Redshaw, M; Ringle, R; Sandler, R; Schwarz, S; Sumithrarachchi, C S; Valverde, A A; Villari, A C C

    2016-01-01

    We report the determination of the Q(EC) value of the mirror transition of (11)C by measuring the atomic masses of (11)C and (11)B using Penning trap mass spectrometry. More than an order of magnitude improvement in precision is achieved as compared to the 2012 Atomic Mass Evaluation (Ame2012) [Chin. Phys. C 36, 1603 (2012)]. This leads to a factor of 3 improvement in the calculated Ft value. Using the new value, Q(EC)=1981.690(61)  keV, the uncertainty on Ft is no longer dominated by the uncertainty on the Q(EC) value. Based on this measurement, we provide an updated estimate of the Gamow-Teller to Fermi mixing ratio and standard model values of the correlation coefficients. PMID:26799013

  17. Precise Determination of Brillouin Scattering Spectrum Using a Virtually Imaged Phase Array (VIPA) Spectrometer and Charge-Coupled Device (CCD) Camera.

    PubMed

    Meng, Zhaokai; Yakovlev, Vladislav V

    2016-08-01

    Brillouin spectroscopy is an emerging tool for microscopic optical imaging as it allows noninvasive assessment of viscoelastic properties of materials. The use of atomic-molecular absorption cells as ultra-narrow notch filters allows acquisition of Brillouin spectra from turbid samples despite their strong elastic scattering. However, such systems alter the shapes of the Brillouin lines, making the precise determination of the Brillouin shift difficult. In this report, we propose a simple method for analyzing the Brillouin spectrum using a customized least-square fitting algorithm. The absorption spectrum induced by the atomic-molecular cell was taken into consideration. The capability of the method is confirmed by processing experimental spectroscopic data from the pure water at different temperatures. The accuracy of the measurements of ±1 MHz spectral line shift is experimentally demonstrated. PMID:27296309

  18. High Precision Determination of the β Decay QEC Value of 11C and Implications on the Tests of the Standard Model

    NASA Astrophysics Data System (ADS)

    Gulyuz, K.; Bollen, G.; Brodeur, M.; Bryce, R. A.; Cooper, K.; Eibach, M.; Izzo, C.; Kwan, E.; Manukyan, K.; Morrissey, D. J.; Naviliat-Cuncic, O.; Redshaw, M.; Ringle, R.; Sandler, R.; Schwarz, S.; Sumithrarachchi, C. S.; Valverde, A. A.; Villari, A. C. C.

    2016-01-01

    We report the determination of the QEC value of the mirror transition of 11C by measuring the atomic masses of 11C and 11B using Penning trap mass spectrometry. More than an order of magnitude improvement in precision is achieved as compared to the 2012 Atomic Mass Evaluation (Ame2012) [Chin. Phys. C 36, 1603 (2012)]. This leads to a factor of 3 improvement in the calculated F t value. Using the new value, QEC=1981.690 (61 ) keV , the uncertainty on F t is no longer dominated by the uncertainty on the QEC value. Based on this measurement, we provide an updated estimate of the Gamow-Teller to Fermi mixing ratio and standard model values of the correlation coefficients.

  19. Synthetic oligosaccharides as heparin-mimetics displaying anticoagulant properties.

    PubMed

    Avci, Fikri Y; Karst, Nathalie A; Linhardt, Robert J

    2003-01-01

    Heparin and low molecular weight heparins are major clinical anticoagulants and the drugs of choice for the treatment of deep venous thrombosis. The discovery of an antithrombin binding domain in heparin focused interest on understanding the mechanism of heparin's antithrombotic/ anticoagulant activity. Various heparin-mimetic oligosaccharides have been prepared in an effort to replace polydisperse heparin and low molecular weight heparins with a structurally-defined anticoagulant. The goal of attaining a heparin-mimetic with no unwanted side-effects has also provided motivation for these efforts. This article reviews structure-activity relationship (SAR) of structurally-defined heparin-mimetic oligosaccharides. PMID:14529394

  20. Role of human milk oligosaccharides in Group B Streptococcus colonisation.

    PubMed

    Andreas, Nicholas J; Al-Khalidi, Asmaa; Jaiteh, Mustapha; Clarke, Edward; Hyde, Matthew J; Modi, Neena; Holmes, Elaine; Kampmann, Beate; Mehring Le Doare, Kirsty

    2016-08-01

    Group B Streptococcus (GBS) infection is a major cause of morbidity and mortality in infants. The major risk factor for GBS disease is maternal and subsequent infant colonisation. It is unknown whether human milk oligosaccharides (HMOs) protect against GBS colonisation. HMO production is genetically determined and linked to the Lewis antigen system. We aimed to investigate the association between HMOs and infant GBS colonisation between birth and postnatal day 90. Rectovaginal swabs were collected at delivery, as well as colostrum/breast milk, infant nasopharyngeal and rectal swabs at birth, 6 days and days 60-89 postpartum from 183 Gambian mother/infant pairs. GBS colonisation and serotypes were determined using culture and PCR. (1)H nuclear magnetic resonance spectroscopy was used to characterise the mother's Lewis status and HMO profile in breast milk. Mothers who were Lewis-positive were significantly less likely to be colonised by GBS (X (2)=12.50, P<0.001). Infants of Lewis-positive mothers were less likely GBS colonised at birth (X (2)=4.88 P=0.03) and more likely to clear colonisation between birth and days 60-89 than infants born to Lewis-negative women (P=0.05). There was no association between Secretor status and GBS colonisation. In vitro work revealed that lacto-N-difucohexaose I (LNDFHI) correlated with a reduction in the growth of GBS. Our results suggest that HMO such as LNDFHI may be a useful adjunct in reducing maternal and infant colonisation and hence invasive GBS disease. Secretor status offers utility as a stratification variable in GBS clinical trials. PMID:27588204

  1. Role of human milk oligosaccharides in Group B Streptococcus colonisation

    PubMed Central

    Andreas, Nicholas J; Al-Khalidi, Asmaa; Jaiteh, Mustapha; Clarke, Edward; Hyde, Matthew J; Modi, Neena; Holmes, Elaine; Kampmann, Beate; Mehring Le Doare, Kirsty

    2016-01-01

    Group B Streptococcus (GBS) infection is a major cause of morbidity and mortality in infants. The major risk factor for GBS disease is maternal and subsequent infant colonisation. It is unknown whether human milk oligosaccharides (HMOs) protect against GBS colonisation. HMO production is genetically determined and linked to the Lewis antigen system. We aimed to investigate the association between HMOs and infant GBS colonisation between birth and postnatal day 90. Rectovaginal swabs were collected at delivery, as well as colostrum/breast milk, infant nasopharyngeal and rectal swabs at birth, 6 days and days 60–89 postpartum from 183 Gambian mother/infant pairs. GBS colonisation and serotypes were determined using culture and PCR. 1H nuclear magnetic resonance spectroscopy was used to characterise the mother's Lewis status and HMO profile in breast milk. Mothers who were Lewis-positive were significantly less likely to be colonised by GBS (X2=12.50, P<0.001). Infants of Lewis-positive mothers were less likely GBS colonised at birth (X2=4.88 P=0.03) and more likely to clear colonisation between birth and days 60–89 than infants born to Lewis-negative women (P=0.05). There was no association between Secretor status and GBS colonisation. In vitro work revealed that lacto-N-difucohexaose I (LNDFHI) correlated with a reduction in the growth of GBS. Our results suggest that HMO such as LNDFHI may be a useful adjunct in reducing maternal and infant colonisation and hence invasive GBS disease. Secretor status offers utility as a stratification variable in GBS clinical trials. PMID:27588204

  2. How the Arming Participating Moieties can Broaden the Scope of Chemoselective Oligosaccharide Synthesis by Allowing the Inverse Armed-Disarmed Approach

    PubMed Central

    Smoot, James T.; Demchenko, Alexei V.

    2009-01-01

    A new method for stereocontrolled glycosylation and chemoselective oligosaccharide synthesis has been developed. It has been determined that complete 1,2-trans selectivity can be achieved with the use of a 2-O-picolyl moiety, a novel neighboring group that is capable of efficient participation via a six-membered intermediate. The application of the picolyl concept to glycosidations of thioimidoyl, thioglycosyl, and trichloroacetimidoyl glycosyl donors is demonstrated. The picolyl moiety also retains the glycosyl donor in the armed state, as opposed to conventional acyl participating moieties. We name this new approach - “inverse armed-disarmed” strategy, because it allows for the chemoselective introduction of a 1,2-trans glycosidic linkage prior to other linkages. In the context of the oligosaccharide synthesis, the strategy provides trans-trans and trans-cis patterned oligosaccharides as opposed to classic Fraser-Reid’s armed-disarmed approach leading to cis-trans and cis-cis linkages. PMID:18939875

  3. Precision Muonium Spectroscopy

    NASA Astrophysics Data System (ADS)

    Jungmann, Klaus P.

    2016-09-01

    The muonium atom is the purely leptonic bound state of a positive muon and an electron. It has a lifetime of 2.2 µs. The absence of any known internal structure provides for precision experiments to test fundamental physics theories and to determine accurate values of fundamental constants. In particular ground state hyperfine structure transitions can be measured by microwave spectroscopy to deliver the muon magnetic moment. The frequency of the 1s-2s transition in the hydrogen-like atom can be determined with laser spectroscopy to obtain the muon mass. With such measurements fundamental physical interactions, in particular quantum electrodynamics, can also be tested at highest precision. The results are important input parameters for experiments on the muon magnetic anomaly. The simplicity of the atom enables further precise experiments, such as a search for muonium-antimuonium conversion for testing charged lepton number conservation and searches for possible antigravity of muons and dark matter.

  4. Xylo- and cello-oligosaccharide oxidation by gluco-oligosaccharide oxidase from Sarocladium strictum and variants with reduced substrate inhibition

    PubMed Central

    2013-01-01

    Background The oxidation of carbohydrates from lignocellulose can facilitate the synthesis of new biopolymers and biochemicals, and also reduce sugar metabolism by lignocellulolytic microorganisms, reserving aldonates for fermentation to biofuels. Although oxidoreductases that oxidize cellulosic hydrolysates have been well characterized, none have been reported to oxidize substituted or branched xylo-oligosaccharides. Moreover, this is the first report that identifies amino acid substitutions leading to GOOX variants with reduced substrate inhibition. Results The recombinant wild type gluco-oligosaccharide oxidase (GOOX) from the fungus Sarocladium strictum, along with variants that were generated by site-directed mutagenesis, retained the FAD cofactor, and showed high activity on cello-oligosaccharide and xylo-oligosaccharides, including substituted and branched xylo-oligosaccharides. Mass spectrometric analyses confirmed that GOOX introduces one oxygen atom to oxidized products, and 1H NMR and tandem mass spectrometry analysis confirmed that oxidation was restricted to the anomeric carbon. The A38V mutation, which is close to a predicted divalent ion-binding site in the FAD-binding domain of GOOX but 30 Å away from the active site, significantly increased the kcat and catalytic efficiency of the enzyme on all oligosaccharides. Eight amino acid substitutions were separately introduced to the substrate-binding domain of GOOX-VN (at positions Y72, E247, W351, Q353 and Q384). In all cases, the Km of the enzyme variant was higher than that of GOOX, supporting the role of corresponding residues in substrate binding. Most notably, W351A increased Km values by up to two orders of magnitude while also increasing kcat up to 3-fold on cello- and xylo-oligosaccharides and showing no substrate inhibition. Conclusions This study provides further evidence that S. strictum GOOX has broader substrate specificity than the enzyme name implies, and that substrate inhibition can be

  5. Precise determination of the low-energy hadronic contribution to the muon g -2 from analyticity and unitarity: An improved analysis

    NASA Astrophysics Data System (ADS)

    Ananthanarayan, B.; Caprini, Irinel; Das, Diganta; Imsong, I. Sentitemsu

    2016-06-01

    The two-pion low-energy contribution to the anomalous magnetic moment of the muon, aμ≡(g -2 )μ/2 , expressed as an integral over the modulus squared of the pion electromagnetic form factor, brings a relatively large contribution to the theoretical error, since the low accuracy of experimental measurements in this region is amplified by the drastic increase of the integration kernel. We derive stringent constraints on the two-pion contribution by exploiting analyticity and unitarity of the pion electromagnetic form factor. To avoid the poor knowledge of the modulus of this function, we use instead its phase, known with high precision in the elastic region from Roy equations for pion-pion scattering via the Fermi-Watson theorem. Above the inelastic threshold we adopt a conservative integral condition on the modulus, determined from data and perturbative QCD. Additional high precision data on the modulus in the range 0.65-0.71 GeV, obtained from e+e- annihilation and τ -decay experiments, are used to improve the predictions on the modulus at lower energies by means of a parametrization-free analytic extrapolation. The results are optimal for a given input and do not depend on the unknown phase of the form factor above the inelastic threshold. The present work improves a previous analysis based on the same technique, including more experimental data and employing better statistical tools for their treatment. We obtain for the contribution to aμ from below 0.63 GeV the value (133.258 ±0.723 )×10-10 , which amounts to a reduction of the theoretical error by about 6 ×10-11 .

  6. High-precision (p,t) reaction measurement to determine {sup 18}Ne({alpha},p){sup 21}Na reaction rates

    SciTech Connect

    Matic, A.; Berg, A. M. van den; Harakeh, M. N.; Woertche, H. J.; Berg, G. P. A.; Couder, M.; Fisker, J. L.; Goerres, J.; LeBlanc, P.; O'Brien, S.; Wiescher, M.; Fujita, K.; Hatanaka, K.; Sakemi, Y.; Shimizu, Y.; Tameshige, Y.; Tamii, A.; Yosoi, M.; Adachi, T.; Fujita, Y.

    2009-11-15

    x-ray bursts are identified as thermonuclear explosions in the outer atmosphere of accreting neutron stars. The thermonuclear runaway is fueled by the {alpha}p process that describes a sequence of ({alpha},p) reactions triggered by the {sup 18}Ne({alpha},p){sup 21}Na breakout reaction from the hot CNO cycles. We studied the level structure of the compound nucleus {sup 22}Mg by measuring the {sup 24}Mg(p,t){sup 22}Mg reaction at the Grand Raiden spectrometer at Research Center for Nuclear Physics, Osaka. A large number of {alpha}-unbound states was identified and precise excitation energies were determined. Based on shell model and {alpha}-cluster model calculations we predict the level parameters for determining the stellar reaction rate of {sup 18}Ne({alpha},p){sup 21}Na for a wide temperature range. x-ray burst simulations have been performed to study the impact of the reaction on the x-ray burst luminosity.

  7. Determination of the Boltzmann constant by means of precision measurements of H2(18)O line shapes at 1.39  μm.

    PubMed

    Moretti, L; Castrillo, A; Fasci, E; De Vizia, M D; Casa, G; Galzerano, G; Merlone, A; Laporta, P; Gianfrani, L

    2013-08-01

    We report on a new implementation of Doppler broadening thermometry based on precision absorption spectroscopy by means of a pair of offset-frequency locked extended-cavity diode lasers at 1.39  μm. The method consists in the highly accurate observation of the shape of the 4(4,1)→4(4,0) line of the H2(18)O ν1+ν3 band, in a water vapor sample at thermodynamic equilibrium. A sophisticated and extremely refined spectral analysis procedure is adopted for the retrieval of the Doppler width as a function of the gas pressure, taking into account the Dicke narrowing effect, the speed dependence of relaxation rates, and the physical correlation between velocity-changing and dephasing collisions. A spectroscopic determination of the Boltzmann constant with a combined (type A and type B) uncertainty of 24 parts over 10(6) is reported. This is the best result obtained so far by means of an optical method. Our determination is in agreement with the recommended CODATA value. PMID:23971548

  8. Effect of oligosaccharides on the growth of Lactobacillus delbrueckii subsp. bulgaricus strains isolated from dairy products.

    PubMed

    Ignatova, Tseteslava; Iliev, Ilia; Kirilov, Nikolai; Vassileva, Tonka; Dalgalarrondo, Michèle; Haertlé, Thomas; Chobert, Jean-Marc; Ivanova, Iskra

    2009-10-28

    Eighteen lactic acid bacteria (LAB) strains isolated from dairy products, all identified as Lactobacillus delbrueckii subsp. bulgaricus, were tested for their ability to grow on three different oligosaccharides: fructo-oligosaccharides (FOS), gluco-oligosaccharides (GOS) and galacto-oligosaccharides (GalOS). The growth of LAB on different oligosaccharides was very different. Study of the antimicrobial activities of these LAB indicated that the system of uptake of unusual sugars influenced in a specific way the production of antimicrobial substances (bacteriocins) specific against gram-negative bacteria. The added oligosaccharides induced LAB to form end-products of a typical mixed acid fermentation. The utilization of different types of oligosaccharides may help to explain the ability of Lactobacillus strains to compete with other bacteria in the ecosystem of the human gastro-intestinal tract.

  9. Simultaneous analysis of heparosan oligosaccharides by isocratic liquid chromatography with charged aerosol detection/mass spectrometry.

    PubMed

    Ji, Xiaohu; Hu, Guixin; Zhang, Qiongyan; Wang, Fengshan; Liu, Chunhui

    2016-11-01

    Uncovering the biological roles of heparosan oligosaccharides requires a simple and robust method for their separation and identification. We reported on systematic investigations of the retention behaviors of synthetic heparosan oligosaccharides on porous graphitic carbon (PGC) column by HPLC with charged aerosol detection. Oligosaccharides were strongly retained by PGC material in water-acetonitrile mobile phase, and eluted by trifluoroacetic acid occurring as narrow peaks. Addition of small fraction of methanol led to better selectivity of PGC to oligosaccharides than acetonitrile modifier alone, presumably, resulting from displacement of methanol to give different chemical environment at the PGC surface. Van't-Hoff plots demonstrated that retention behaviors highly depended on the column temperature and oligosaccharide moieties. By implementing the optimal MeOH content and temperature, a novel isocratic elution method was successfully developed for baseline resolution and identification of seven heparosan oligosaccharides using PGC-HPLC-CAD/MS. This approach allows for rapid analysis of heparosan oligosaccharides from various sources. PMID:27516280

  10. Extracellular gluco-oligosaccharide degradation by Caulobacter crescentus.

    PubMed

    Presley, Gerald N; Payea, Matthew J; Hurst, Logan R; Egan, Annie E; Martin, Brandon S; Periyannan, Gopal R

    2014-03-01

    The oligotrophic bacterium Caulobacter crescentus has the ability to metabolize various organic molecules, including plant structural carbohydrates, as a carbon source. The nature of β-glucosidase (BGL)-mediated gluco-oligosaccharide degradation and nutrient transport across the outer membrane in C. crescentus was investigated. All gluco-oligosaccharides tested (up to celloheptose) supported growth in M2 minimal media but not cellulose or CM-cellulose. The periplasmic and outer membrane fractions showed highest BGL activity, but no significant BGL activity was observed in the cytosol or extracellular medium. Cells grown in cellobiose showed expression of specific BGLs and TonB-dependent receptors (TBDRs). Carbonyl cyanide 3-chlorophenylhydrazone lowered the rate of cell growth in cellobiose but not in glucose, indicating potential cellobiose transport into the cell by a proton motive force-dependent process, such as TBDR-dependent transport, and facilitated diffusion of glucose across the outer membrane via specific porins. These results suggest that C. crescentus acquires carbon from cellulose-derived gluco-oligosaccharides found in the environment by extracellular and periplasmic BGL activity and TBDR-mediated transport. This report on extracellular degradation of gluco-oligosaccharides and methods of nutrient acquisition by C. crescentus supports a broader suite of carbohydrate metabolic capabilities suggested by the C. crescentus genome sequence that until now have not been reported.

  11. Capillary electrophoresis of sialylated oligosaccharides in milk from different species.

    PubMed

    Monti, Lucia; Cattaneo, Tiziana Maria Piera; Orlandi, Mario; Curadi, Maria Claudia

    2015-08-28

    Oligosaccharides are relevant components of human milk, which have been quite well studied for their pre-biotic effect and their capacity in stimulating the immune system. Since oligosaccharides from milk of non-human mammals received so far less attention, the aim of this work was the application of capillary electrophoresis (CE) for the analysis of sialylated oligosaccharides in cow, goat and equine (mare and donkey) milk to possibly identify potential sources of oligosaccharides to use as health promoting ingredients in functional foods. Human milk was used as reference milk. A recent CE technique was applied to resolve and quantify 3-sialyllactose (3-SL), 6-sialyllactose (6-SL) and disialyl-lacto-N-tetraose (DSLNT). Analysis of non-human milk samples confirmed differences among species and individuals: DSLNT, which was the most abundant compound in human milk (455-805μg/mL) was missing in most of the samples. In most cases, 3-SL showed to be the most concentrated of the quantified analytes, with values ranging from 12 to 77μg/mL.

  12. Screening Substrate Properties of Microorganisms for Biosensor Detection of Oligosaccharides

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Oligosaccharides feature high biological activity ensuring their wide application in the biotechnology, food, and cosmetic industries. On the other hand they are considered environmental pollutants. The study outlines a biosensor approach to detect these substances which is important from above st...

  13. Selective chemical oxidation and depolymerization of switchgrass [corrected] (Panicum virgatum L.) xylan with [corrected] oligosaccharide product analysis by mass spectrometry.

    PubMed

    Bowman, Michael J; Dien, Bruce S; O'Bryan, Patricia J; Sarath, Gautam; Cotta, Michael A

    2011-04-15

    Xylan is a barrier to enzymatic hydrolysis of plant cell walls. It is well accepted that the xylan layer needs to be removed to efficiently hydrolyze cellulose; consequently, pretreatment conditions are (in part) optimized for maximal xylan depolymerization or displacement. Xylan consists of a long chain of β-1,4-linked xylose units substituted with arabinose (typically α-1,3-linked in grasses) and glucuronic acid (α-1,2-linked). Xylan has been proposed to have a structural function in plants and therefore may play a role in determining biomass reactivity to pretreatment. It has been proposed that substitutions along xylan chains are not random and, based upon studies of pericarp xylan, are organized in domains that have specific structural functions. Analysis of intact xylan is problematic because of its chain length (> degree of polymerization (d.p.) 100) and heterogeneous side groups. Traditionally, enzymatic end-point products have been characterized due to the limited products generated. Analysis of resultant arabino-xylo-oligosaccharides by mass spectrometry is complicated by the isobaric pentose sugars that primarily compose xylan. In this report, the variation in pentose ring structures was exploited for selective oxidation of the arabinofuranose primary alcohols followed by acid depolymerization to provide oligosaccharides with modified arabinose branches intact. Switchgrass samples were analyzed by hydrophilic interaction chromatography (HILIC)-liquid chromatography (LC)-mass spectrometry/mass spectrometry (MSMS) and off-line nanospray MS to demonstrate the utility of this chemistry for determination of primary hydroxyl groups on oligosaccharide structures, with potential applications for determining the sequence of arabino-xylo-oligosaccharides present in plant cell wall material.

  14. Purification and characterization of a xyloglucan oligosaccharide-specific xylosidase from pea seedlings

    SciTech Connect

    O'Neill, R.A.; Albersheim, P.; Darvill, A.G. )

    1989-12-05

    An {alpha}-xylosidase that acts on oligosaccharide fragments of xyloglucan, a plant cell wall polysaccharide, was purified from pea (Pisum sativum) epicotyls that had been treated with an auxin analog. The enzyme had an apparent molecular mass of 85,000 Da according to sodium dodecyl sulfate-polyacrylamide gel electrophoresis and 79,000 Da according to gel-permeation chromatography under nondenaturing conditions. The purified xylosidase consisted of a series of closely related, enzymatically active proteins with isoelectric points ranging from about pH 7.35 to 7.7; the xylosidases were separated by chromatofocusing. The pH optimum of the mixed xylosidase was 4.9-5.1. The substrate specificity of the xylosidase mixture was determined by purification and structural characterization of the products of treating xyloglucan-oligosaccharide substrates with the enzyme. Characterization of the substrates and products included elution volume from a gel-permeation column, glycosyl residue and glycosyl linkage composition analyses, fast atom bombardment-mass spectrometry, and {sup 1}H NMR spectroscopy. The enzyme specifically cleaved only one of the {alpha}-xylosidic linkages of xyloglucan-oligosaccharide substrates, the one attached to a 6-linked glucosyl residue, not those attached to the 4,6-linked glucosyl residues. The enzyme was unable to cleave the xylosidic linkage of p-nitrophenyl-{alpha}-D-xylopyranoside or the {alpha}-xylosidic linkage to C-6 of glucose in the disaccharide isoprimeverose. The enzyme was also unable to release measurable amounts of xylose from large xyloglucan polymers.

  15. Structural characterization of the N-linked oligosaccharides from tomato fruit.

    PubMed

    Zeleny, R; Altmann, F; Praznik, W

    1999-05-01

    The primary structures of the N-linked oligosaccharides from tomato fruit (Lycopersicon esculentum) have been elucidated. For the isolation of the protein fraction, two procedures were employed alternatively: a low temperature acetone powder method and ammonium sulfate precipitation of the tomato extract. After peptic digestion, the glycopeptides were purified by cation-exchange chromatography; the oligosaccharides were released by N-glycosidase A and fluorescently labelled with 2-aminopyridine. Structural characterization was accomplished by means of two-dimensional HPLC in combination with exoglycosidase digestions and MALDI-TOF mass spectrometry. Two varieties as well as two stages of ripening were investigated. In all the samples, the same sixteen N-glycosidic structures were detected; the two most abundant glycans showed identical properties to those of the major N-linked oligosaccharides of horseradish peroxidase and pineapple stem bromelain, respectively and accounted for about 65-78% of the total glycan amount; oligomannosidic glycans occurred only in small quantities (3-9%). The majority of the N-glycans were beta 1,2-xylosylated and carried an alpha 1,3-fucose residue linked to the terminal N-acetylglucosamine. This structural element contributes to cross-reactions among non-related glycoproteins and has been shown to be an IgE-reactive determinant (Tretter, Altmann, Kubelka, März, & Becker, 1993). The presented study gives a possible structural explanation for reported immunological cross-reactivities between tomato and grass pollen extracts due to carbohydrate IgE epitopes (Petersen, Vieths, Aulepp, Schlaak, & Becker, 1996), thereby demonstrating the importance of the structural characterization of plant N-glycans for a more reliable interpretation of immunological data. PMID:10365448

  16. Extraction of CO2 from air samples for isotopic analysis and limits to ultra high precision delta18O determination in CO2 gas.

    PubMed

    Werner, R A; Rothe, M; Brand, W A

    2001-01-01

    The determination of delta18O values in CO2 at a precision level of +/-0.02 per thousand (delta-notation) has always been a challenging, if not impossible, analytical task. Here, we demonstrate that beyond the usually assumed major cause of uncertainty - water contamination - there are other, hitherto underestimated sources of contamination and processes which can alter the oxygen isotope composition of CO2. Active surfaces in the preparation line with which CO2 comes into contact, as well as traces of air in the sample, can alter the apparent delta18O value both temporarily and permanently. We investigated the effects of different surface materials including electropolished stainless steel, Duran glass, gold and quartz, the latter both untreated and silanized. CO2 frozen with liquid nitrogen showed a transient alteration of the 18O/16O ratio on all surfaces tested. The time to recover from the alteration as well as the size of the alteration varied with surface type. Quartz that had been ultrasonically cleaned for several hours with high purity water (0.05 microS) exhibited the smallest effect on the measured oxygen isotopic composition of CO2 before and after freezing. However, quartz proved to be mechanically unstable with time when subjected to repeated large temperature changes during operation. After several days of operation the gas released from the freezing step contained progressively increasing trace amounts of O2 probably originating from inclusions within the quartz, which precludes the use of quartz for cryogenically trapping CO2. Stainless steel or gold proved to be suitable materials after proper pre-treatment. To ensure a high trapping efficiency of CO2 from a flow of gas, a cold trap design was chosen comprising a thin wall 1/4" outer tube and a 1/8" inner tube, made respectively from electropolished stainless steel and gold. Due to a considerable 18O specific isotope effect during the release of CO2 from the cold surface, the thawing time had to

  17. Linkage and Branch Analysis of High-Mannose Oligosaccharides Using Closed-Ring Labeling of 8-Aminopyrene-1,3,6-Trisulfonate and P-Aminobenzoic Ethyl Ester and Negative Ion Trap Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Chen, Shu-Ting; Her, Guor-Rong

    2012-08-01

    A strategy based on negative ion electrospray ionization tandem mass spectrometry and closed-ring labeling with both 8-aminopyrene-1,3,6-trisulfonate (APTS) and p-aminobenzoic acid ethyl ester (ABEE) was developed for linkage and branch determination of high-mannose oligosaccharides. X-type cross-ring fragment ions obtained from APTS-labeled oligosaccharides by charge remote fragmentation provided information on linkages near the non-reducing terminus. In contrast, A-type cross-ring fragment ions observed from ABEE-labeled oligosaccharides yielded information on linkages near the reducing terminus. This complementary information provided by APTS- and ABEE-labeled oligosaccharides was utilized to delineate the structures of the high-mannose oligosaccharides. As a demonstration of this approach, the linkages and branches of high-mannose oligosaccharides Man5GlcNAc2, Man6GlcNAc2, Man8GlcNAc2, and Man9GlcNAc2 cleaved from the ribonuclease B were assigned from MS2 spectra of ABEE- and APTS-labeled derivatives.

  18. Synthesis of the oligosaccharides related to branching sites of fucosylated chondroitin sulfates from sea cucumbers.

    PubMed

    Ustyuzhanina, Nadezhda E; Fomitskaya, Polina A; Gerbst, Alexey G; Dmitrenok, Andrey S; Nifantiev, Nikolay E

    2015-02-01

    Natural anionic polysaccharides fucosylated chondroitin sulfates (FCS) from sea cucumbers attract great attention nowadays due to their ability to influence various biological processes, such as blood coagulation, thrombosis, angiogenesis, inflammation, bacterial and viral adhesion. To determine pharmacophore fragments in FCS we have started systematic synthesis of oligosaccharides with well-defined structure related to various fragments of these polysaccharides. In this communication, the synthesis of non-sulfated and selectively O-sulfated di- and trisaccharides structurally related to branching sites of FCS is described. The target compounds are built up of propyl β-d-glucuronic acid residue bearing at O-3 α-l-fucosyl or α-l-fucosyl-(1→3)-α-l-fucosyl substituents. O-Sulfation pattern in the fucose units of the synthetic targets was selected according to the known to date holothurian FCS structures. Stereospecific α-glycoside bond formation was achieved using 2-O-benzyl-3,4-di-O-chloroacetyl-α-l-fucosyl trichloroacetimidate as a donor. Stereochemical outcome of the glycosylation was explained by the remote participation of the chloroacetyl groups with the formation of the stabilized glycosyl cations, which could be attacked by the glycosyl acceptor only from the α-side. The experimental results were in good agreement with the SCF/MP2 calculated energies of such participation. The synthesized oligosaccharides are regarded as model compounds for the determination of a structure-activity relationship in FCS.

  19. Synthesis of the Oligosaccharides Related to Branching Sites of Fucosylated Chondroitin Sulfates from Sea Cucumbers

    PubMed Central

    Ustyuzhanina, Nadezhda E.; Fomitskaya, Polina A.; Gerbst, Alexey G.; Dmitrenok, Andrey S.; Nifantiev, Nikolay E.

    2015-01-01

    Natural anionic polysaccharides fucosylated chondroitin sulfates (FCS) from sea cucumbers attract great attention nowadays due to their ability to influence various biological processes, such as blood coagulation, thrombosis, angiogenesis, inflammation, bacterial and viral adhesion. To determine pharmacophore fragments in FCS we have started systematic synthesis of oligosaccharides with well-defined structure related to various fragments of these polysaccharides. In this communication, the synthesis of non-sulfated and selectively O-sulfated di- and trisaccharides structurally related to branching sites of FCS is described. The target compounds are built up of propyl β-d-glucuronic acid residue bearing at O-3 α-l-fucosyl or α-l-fucosyl-(1→3)-α-l-fucosyl substituents. O-Sulfation pattern in the fucose units of the synthetic targets was selected according to the known to date holothurian FCS structures. Stereospecific α-glycoside bond formation was achieved using 2-O-benzyl-3,4-di-O-chloroacetyl-α-l-fucosyl trichloroacetimidate as a donor. Stereochemical outcome of the glycosylation was explained by the remote participation of the chloroacetyl groups with the formation of the stabilized glycosyl cations, which could be attacked by the glycosyl acceptor only from the α-side. The experimental results were in good agreement with the SCF/MP2 calculated energies of such participation. The synthesized oligosaccharides are regarded as model compounds for the determination of a structure-activity relationship in FCS. PMID:25648510

  20. Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin.

    PubMed

    Ziółkowska, Natasza E; Shenoy, Shilpa R; O'Keefe, Barry R; McMahon, James B; Palmer, Kenneth E; Dwek, Raymond A; Wormald, Mark R; Wlodawer, Alexander

    2007-05-15

    The mode of binding of oligosaccharides to griffithsin, an antiviral lectin from the red alga Griffithsia sp., was investigated by a combination of X-ray crystallography, isothermal titration calorimetry, and molecular modeling. The structures of complexes of griffithsin with 1-->6alpha-mannobiose and with maltose were solved and refined at the resolution of 2.0 and 1.5 A, respectively. The thermodynamic parameters of binding of 1-->6alpha-mannobiose, maltose, and mannose to griffithsin were determined. Binding profiles of 1-->6alpha-mannobiose and mannose were similar with Kd values of 83.3 microM and 102 microM, respectively. The binding of maltose to griffithsin was significantly weaker, with a fourfold lower affinity (Kd = 394 microM). In all cases the binding at 30 degrees C was entropically rather than enthalpically driven. On the basis of the experimental crystal structures, as well as on previously determined structures of complexes with monosaccharides, it was possible to create a model of a tridentate complex of griffithsin with Man9GlcNAc2, a high mannose oligosaccharide commonly found on the surface of viral glycoproteins. All shorter oligomannoses could be modeled only as bidentate or monodentate complexes with griffithsin. The ability to mediate tight multivalent and multisite interactions with high-mannose oligosaccharides helps to explain the potent antiviral activity of griffithsin.

  1. Characterization of α-galacto-oligosaccharides formed via heterologous expression of α-galactosidases from Lactobacillus reuteri in Lactococcus lactis.

    PubMed

    Wang, Yvonne; Black, Brenna A; Curtis, Jonathan M; Gänzle, Michael G

    2014-03-01

    α-Galacto-oligosaccharides (α-GOS) are produced by transgalactosylation reactions of α-galactosidase (α-Gal) or by conversion of raffinose family oligosaccharides by levansucrase. Similarly to β-GOS, α-GOS have the potential to mimic glycan receptors on eukaryotic cells and act as molecular decoys to prevent bacterial infection; however, data on transgalactosylation reactions of α-Gal remain scarce. The α-Gal gene sequence from Lactobacillus reuteri was cloned into an α-Gal negative strain of Lactococcus lactis. Transgalactosylation reactions were achieved using crude cell extracts with melibiose or raffinose as galactosyl donor and fucose, N-acetylglucosamine or lactose as galactosyl acceptor. The composition, sequence and most linkage types of α-GOS formed with acceptors saccharides were determined by liquid chromatography-tandem mass spectrometry. α-Gal of Lactobacillus reuteri formed (1 → 3)-, (1 → 4)- or (1 → 6)-linked α-GOS but exhibited a preference for formation of (1 → 6)-linkages. Fucose, N-acetylglucosamine and lactose were suitable galactosyl acceptors for α-Gal of L. reuteri, resulting in formation of (1 → 3)-, (1 → 4)- or (1 → 6)-linked hetero-oligosaccharides. By determining the structural specificity of α-Gal and increasing the variation of oligosaccharides produced by introducing alternative acceptor sugars, this work supports further studies to assess α-GOS pathogen adhesion prevention in mammalian hosts.

  2. Determination of (241)Pu by the method of disturbed radioactive equilibrium using 2πα-counting and precision gamma-spectrometry.

    PubMed

    Alekseev, I; Kuzmina, T

    2016-04-01

    A simple technique is proposed for the determination of the content of (241)Pu, which is based on disturbance of radioactive equilibrium in the genetically related (237)U←(241)Pu→(241)Am decay chain of radionuclides, with the subsequent use of 2πα-counting and precision gamma-spectroscopy for monitoring the process of restoration of that equilibrium. It has been shown that the data on dynamics of accumulation of the daughter (241)Am, which were obtained from the results of measurements of α- and γ-spectra of the samples, correspond to the estimates calculated for the chain of two genetically related radionuclides, the differences in the estimates of (241)Pu radioactivity not exceeding 2%. Combining the different methods of registration (2πα-counting, semiconductor alpha- and gamma-spectrometry) enables the proposed method to be efficiently applied both for calibration of (241)Pu-sources (from several hundreds of kBq and higher) and for radioisotopic analysis of plutonium mixtures. In doing so, there is a deep purification of (241)Pu from its daughter decay products required due to unavailability of commercial detectors that could make it possible, based only on analysis of alpha-spectra, to conduct quantitative analysis of the content of (238)Pu and (241)Am. PMID:26868275

  3. Determination of (241)Pu by the method of disturbed radioactive equilibrium using 2πα-counting and precision gamma-spectrometry.

    PubMed

    Alekseev, I; Kuzmina, T

    2016-04-01

    A simple technique is proposed for the determination of the content of (241)Pu, which is based on disturbance of radioactive equilibrium in the genetically related (237)U←(241)Pu→(241)Am decay chain of radionuclides, with the subsequent use of 2πα-counting and precision gamma-spectroscopy for monitoring the process of restoration of that equilibrium. It has been shown that the data on dynamics of accumulation of the daughter (241)Am, which were obtained from the results of measurements of α- and γ-spectra of the samples, correspond to the estimates calculated for the chain of two genetically related radionuclides, the differences in the estimates of (241)Pu radioactivity not exceeding 2%. Combining the different methods of registration (2πα-counting, semiconductor alpha- and gamma-spectrometry) enables the proposed method to be efficiently applied both for calibration of (241)Pu-sources (from several hundreds of kBq and higher) and for radioisotopic analysis of plutonium mixtures. In doing so, there is a deep purification of (241)Pu from its daughter decay products required due to unavailability of commercial detectors that could make it possible, based only on analysis of alpha-spectra, to conduct quantitative analysis of the content of (238)Pu and (241)Am.

  4. Oligosaccharide release from frozen and paraffin-wax-embedded archival tissues.

    PubMed

    Dwek, M V; Brooks, S A; Streets, A J; Harvey, D J; Leathem, A J

    1996-11-01

    Altered glycosylation is a feature of many solid tissue diseases such as ulcerative colitis, Crohn's disease, cancer, and connective tissue disorders. Conventionally, oligosaccharide changes have been studied by immunohistochemical techniques. We have adapted existing techniques, developed for purified protein preparations, to allow the release of intact oligosaccharides from archival tissues, so that the oligosaccharides may be structurally characterized. In our study, sections cut from paraffin-wax blocks were dewaxed and oligosaccharides were released using hydrazine and labeled with 2-aminobenzamide. Sialylated oligosaccharides were compared by passing through a GlycoSep C divinylbenzene anion exchange resin column and neutral oligosaccharides were compared by passing through a BioGel P4 column. The oligosaccharide profiles obtained from the same fresh frozen versus archival paraffin-wax-embedded, normal liver, and tumor tissues showed remarkable similarity in terms of their sialylated and neutral structures. Matrix-assisted laser desorption ionization mass spectrometry has shown that the oligosaccharides are not affected by fixation in formalin and storage in paraffin wax. The results indicate that while the proteins themselves may be denatured, oligosaccharides are not adversely affected by fixation in formalin and storage in paraffin wax. By applying these methods, oligosaccharides from archival tissues, where the natural history of the disease has been followed, may now be liberated and structurally characterized.

  5. Fermentation properties and potential prebiotic activity of Bimuno® galacto-oligosaccharide (65 % galacto-oligosaccharide content) on in vitro gut microbiota parameters.

    PubMed

    Grimaldi, Roberta; Swann, Jonathan R; Vulevic, Jelena; Gibson, Glenn R; Costabile, Adele

    2016-08-01

    Prebiotic oligosaccharides have the ability to generate important changes in the gut microbiota composition that may confer health benefits to the host. Reducing the impurities in prebiotic mixtures could expand their applications in food industries and improve their selectivity and prebiotic effect on the potential beneficial bacteria such as bifidobacteria and lactobacilli. This study aimed to determine the in vitro potential fermentation properties of a 65 % galacto-oligosaccharide (GOS) content Bimuno® GOS (B-GOS) on gut microbiota composition and their metabolites. Fermentation of 65 % B-GOS was compared with 52 % B-GOS in pH- and volume-controlled dose-response anaerobic batch culture experiments. In total, three different doses (1, 0·5 and 0·33 g equivalent to 0·1, 0·05 and 0·033 g/l) were tested. Changes in the gut microbiota during a time course were identified by fluorescence in situ hybridisation, whereas small molecular weight metabolomics profiles and SCFA were determined by 1H-NMR analysis and GC, respectively. The 65 % B-GOS showed positive modulation of the microbiota composition during the first 8 h of fermentation with all doses. Administration of the specific doses of B-GOS induced a significant increase in acetate as the major SCFA synthesised compared with propionate and butyrate concentrations, but there were no significant differences between substrates. The 65 % B-GOS in syrup format seems to have, in all the analysis, an efficient prebiotic effect. However, the applicability of such changes remains to be shown in an in vivo trial. PMID:27267934

  6. Legume receptors perceive the rhizobial lipochitin oligosaccharide signal molecules by direct binding

    PubMed Central

    Broghammer, Angelique; Krusell, Lene; Blaise, Mickaël; Sauer, Jørgen; Sullivan, John T.; Maolanon, Nicolai; Vinther, Maria; Lorentzen, Andrea; Madsen, Esben B.; Jensen, Knud J.; Roepstorff, Peter; Thirup, Søren; Ronson, Clive W.; Thygesen, Mikkel B.; Stougaard, Jens

    2012-01-01

    Lipochitin oligosaccharides called Nod factors function as primary rhizobial signal molecules triggering legumes to develop new plant organs: root nodules that host the bacteria as nitrogen-fixing bacteroids. Here, we show that the Lotus japonicus Nod factor receptor 5 (NFR5) and Nod factor receptor 1 (NFR1) bind Nod factor directly at high-affinity binding sites. Both receptor proteins were posttranslationally processed when expressed as fusion proteins and extracted from purified membrane fractions of Nicotiana benthamiana or Arabidopsis thaliana. The N-terminal signal peptides were cleaved, and NFR1 protein retained its in vitro kinase activity. Processing of NFR5 protein was characterized by determining the N-glycosylation patterns of the ectodomain. Two different glycan structures with identical composition, Man3XylFucGlcNAc4, were identified by mass spectrometry and located at amino acid positions N68 and N198. Receptor–ligand interaction was measured by using ligands that were labeled or immobilized by application of chemoselective chemistry at the anomeric center. High-affinity ligand binding was demonstrated with both solid-phase and free solution techniques. The Kd values obtained for Nod factor binding were in the nanomolar range and comparable to the concentration range sufficient for biological activity. Structure-dependent ligand specificity was shown by using chitin oligosaccharides. Taken together, our results suggest that ligand recognition through direct ligand binding is a key step in the receptor-mediated activation mechanism leading to root nodule development in legumes. PMID:22859506

  7. Human milk oligosaccharides and Lewis blood group: individual high-throughput sample profiling to enhance conclusions from functional studies.

    PubMed

    Blank, Dennis; Dotz, Viktoria; Geyer, Rudolf; Kunz, Clemens

    2012-05-01

    Human milk oligosaccharides (HMO) are discussed to play a crucial role in an infant's development. Lewis blood group epitopes, in particular, seem to remarkably contribute to the beneficial effects of HMO. In this regard, large-scale functional human studies could provide evidence of the variety of results from in vitro investigations, although increasing the amount and complexity of sample and data handling. Therefore, reliable screening approaches are needed. To predict the oligosaccharide pattern in milk, the routine serological Lewis blood group typing of blood samples can be applied due to the close relationship between the biosynthesis of HMO and the Lewis antigens on erythrocytes. However, the actual HMO profile of the individual samples does not necessarily correspond to the serological determinations. This review demonstrates the capabilities of merging the traditional serological Lewis blood group typing with the additional information provided by the comprehensive elucidation of individual HMO patterns by means of state-of-the-art analytics. Deduced from the association of the suggested HMO biosynthesis with the Lewis blood group, the matrix-assisted laser desorption/ionization time-of-flight mass spectrometry profiles of oligosaccharides in individual milk samples exemplify the advantages and the limitations of sample assignment to distinct groups.

  8. Isolation and Characterization of an Agaro-Oligosaccharide (AO)-Hydrolyzing Bacterium from the Gut Microflora of Chinese Individuals

    PubMed Central

    Li, Miaomiao; Li, Guangsheng; Zhu, Liying; Yin, Yeshi; Zhao, Xiaoliang; Xiang, Charlie; Yu, Guangli; Wang, Xin

    2014-01-01

    Agarose (AP) from red algae has a long history as food ingredients in East Asia. Agaro-oligosaccharides (AO) derived from AP have shown potential prebiotic effects. However, the human gut microbes responsible for the degradation of AO and AP have not yet been fully investigated. Here, we reported that AO and AP can be degraded and utilized at various rates by fecal microbiota obtained from different individuals. Bacteroides uniformis L8 isolated from human feces showed a pronounced ability to degrade AO and generate D-galactose as its final end product. PCR-DGGE analysis showed B. uniformis to be common in the fecal samples, but only B. uniformis L8 had the ability to degrade AO. A synergistic strain, here classified as Escherichia coli B2, was also identified because it could utilize the D-galactose as the growth substrate. The cross-feeding interaction between B. uniformis L8 and E. coli B2 led to exhaustion of the AO supply. Bifidobacterium infantis and Bifidobacterium adolescentis can utilize one of the intermediates of AO hydrolysis, agarotriose. Growth curves indicated that AO was the substrate that most favorably sustained the growth of B. uniformis L8. In contrast, κ-carrageenan oligosaccharides (KCO), guluronic acid oligosaccharides (GO), and mannuronic acid oligosaccharides (MO) were found to be unusable to B. uniformis L8. Current results indicate that B. uniformis L8 is a special degrader of AO in the gut microbiota. Because B. uniformis can mitigate high-fat-diet-induced metabolic disorders, further study is required to determine the potential applications of AO. PMID:24622338

  9. More Questions on Precision Teaching.

    ERIC Educational Resources Information Center

    Raybould, E. C.; Solity, J. E.

    1988-01-01

    Precision teaching can accelerate basic skills progress of special needs children. Issues discussed include using probes as performance tests, charting daily progress, using the charted data to modify teaching methods, determining appropriate age levels, assessing the number of students to be precision taught, and carefully allocating time. (JDD)

  10. High-precision determination of {sup 234}U/{sup 238}U activity ratios in natural waters and carbonates by ICPMS

    SciTech Connect

    Ketterer, M.E.; Khourey, C.J.

    1998-12-31

    A method has been developed for precise measurement of {sup 234}U/{sup 238}U activity ratios in natural waters and carbonates using quadrupole inductively coupled plasma mass spectrometry. A recovery of 80--85% of seawater U is achieved by Fe(III) coprecipitation followed by extraction chromatography with a supported dipentyl pentane phosphonate material; 90--95% of U is recovered from carbonates, which are dissolved in HNO{sub 3} and subjected to the same extraction chromatographic preparation. Isotopic measurements are made via recirculating pneumatic nebulization of small volumes of solutions containing 0.5--5 mg/L U. {sup 234}U/{sup 235}U is measured as a proxy for determination of {sup 234}U/{sup 238}U; iridium is added to sample solutions and the ion ratio {sup 191}Ir{sup 40}Ar{sup +}/{sup 193}Ir{sup 40}Ar{sup +} is measured for internal mass discrimination correction {sup 234}U/{sup 238}U activity ratios in the range 1.143--1.154 are observed for 13 seawater and contemporary corals, in agreement with the established marine {sup 234}U/{sup 238}U activity ratio. For samples sizes of 5--25 {micro}g U, ICPMS uncertainties of {+-} 0.2--0.5% relative, 2{theta} standard error, approach those obtained for < 0.1 {micro}g U by thermal ionization mass spectrometry. Measurements of {sup 234}U/{sup 238}U activity ratios in bottled waters, Lake Erie surface waters, mollusk fossils, and fertilizers are also demonstrated.

  11. A practical guide for the design and implementation of the double-spike technique for precise determination of molybdenum isotope compositions of environmental samples.

    PubMed

    Skierszkan, E K; Amini, M; Weis, D

    2015-03-01

    The isotopic double-spike method allows for the determination of stable isotope ratios by multi-collector inductively coupled plasma-mass spectrometry (MC-ICP-MS) with accuracy and precision in the range of ∼0.02 ‰ amu(-1), but its adoption has been hindered by the perceived difficulties in double-spike calibration and implementation. To facilitate the implementation of the double-spike approach, an explanation of the calibration and validation of a (97)Mo-(100)Mo double-spike protocol is given in more detail than has been presented elsewhere. The long-term external standard reproducibility is 0.05 ‰ on δ(98/95)Mo measurements of standards. δ(98/95)Mo values for seawater and U.S. Geological Survey (USGS) reference materials SDO-1 and BCR-2 measured in this study are 2.13 ± 0.04 ‰ (2 SD, n = 3), 0.79 ± 0.05 ‰ (2 SD, n = 11), and -0.04 ± 0.10 ‰ (2 SD, n = 3) relative to the NIST-SRM-3134. The double-spike method corrects for laboratory and instrumental fractionation which are not accounted for using other mass bias correction methods. Spike/sample molar ratios between 0.4 and 0.8 provide accurate isotope measurements; outside of this range, isotope measurements are inaccurate but corrections are possible when standards and samples are spiked at a similar ratio.

  12. Inulin, a flexible oligosaccharide. II: Review of its pharmaceutical applications.

    PubMed

    Mensink, Maarten A; Frijlink, Henderik W; van der Voort Maarschalk, Kees; Hinrichs, Wouter L J

    2015-12-10

    Inulin is a flexible oligosaccharide which has been used primarily in food for decades. Recently new applications in the pharmaceutical arena were described. In a previous review (Mensink et al. (2015). Carbohydrate Polymers, 130, 405) we described the physicochemical characteristics of inulin, characteristics which make inulin a highly versatile substance. Here, we review its pharmaceutical applications. Applications of inulin that are addressed are stabilization of proteins, modified drug delivery (dissolution rate enhancement and drug targeting), and lastly physiological and disease-modifying effects of inulin. Further uses of inulin include colon specific drug administration and stabilizing and adjuvating vaccine formulations. Overall, the uses of inulin in the pharmaceutical area are very diverse and research is still continuing, particularly with chemically modified inulins. It is therefore likely that even more applications will be found for this flexible oligosaccharide.

  13. Glucocerebrosidase, a lysosomal enzyme that does not undergo oligosaccharide phosphorylation.

    PubMed

    Aerts, J M; Schram, A W; Strijland, A; van Weely, S; Jonsson, L M; Tager, J M; Sorrell, S H; Ginns, E I; Barranger, J A; Murray, G J

    1988-03-17

    Labelling of cultured human skin fibroblasts from either control subjects or patients with mucolipidosis II (I-cell disease) with [32P]phosphate resulted in tight association of phosphate with immunoprecipitated glucocerebrosidase, a membrane-associated lysosomal enzyme. Endoglycosidase F digestion of the immunoprecipitated glucocerebrosidase did not release labelled phosphate, suggesting that the phosphate was not associated with the oligosaccharide moiety of this glycoprotein. Purification of the enzyme from cells labelled with [32P]phosphate and [35S]methionine by an immunoaffinity chromatography procedure, which included a washing step with detergent, resulted in complete separation of the phosphate label from the peak of glucocerebrosidase activity and methionine labelling. We conclude that oligosaccharide phosphorylation, which is essential for transport of soluble lysosomal enzymes to the lysosomes in fibroblasts, does not occur in glucocerebrosidase. PMID:3349099

  14. Preparation and antioxidant activities of oligosaccharides from Crassostrea gigas.

    PubMed

    Wu, Shengjun; Huang, Xiaolian

    2017-02-01

    Oligosaccharides were prepared from Crassostrea gigas by hydrolysis of polysaccharide in C. gigas with peroxide oxygen (H2O2). The hydrolysates were cleared of protein, filtered, ultrafiltered and precipitated with absolute ethanol to give C. gigas oligosaccharides (CGOs). Factors affecting CGO yields, i.e., reaction time, temperature, and H2O2 concentration, were optimised as follows: 2.96h reaction time, 84.71°C reaction temperature, and 2.46% H2O2 concentration. Under these conditions, the maximum yield of CGOs reached 10.61%. The CGOs were then partially characterised by Fourier transform infrared spectroscopy, UV spectroscopy, monosaccharide composition, and antioxidant activities. Results indicate that CGOs possessed strong hydroxyl radical activity, 2,2-diphenyl-β-picrylhydrazyl-radical-scavenging activity and reducing capacity at a concentration of 100μg/mL. PMID:27596415

  15. Fructo-oligosaccharides: Production, Purification and Potential Applications.

    PubMed

    Bali, Vandana; Panesar, Parmjit S; Bera, Manab B; Panesar, Reeba

    2015-01-01

    The nutritional and therapeutic benefits of prebiotics have attracted the keen interest of consumers and food processing industry for their use as food ingredients. Fructo-oligosaccharides (FOS), new alternative sweeteners, constitute 1-kestose, nystose, and 1-beta-fructofuranosyl nystose produced from sucrose by the action of fructosyltransferase from plants, bacteria, yeast, and fungi. FOS has low caloric values, non-cariogenic properties, and help gut absorption of ions, decrease levels of lipids and cholesterol and bifidus-stimulating functionality. The purified linear fructose oligomers are added to various food products like cookies, yoghurt, infant milk products, desserts, and beverages due to their potential health benefits. This review is focused on the various aspects of biotechnological production, purification and potential applications of fructo-oligosaccharides.

  16. Lactonization-mediated glycosylations and their application to oligosaccharide synthesis.

    PubMed

    Kim, Kwan Soo; Jeon, Heung Bae

    2008-01-01

    The concept of lactonization-mediated and related glycosylations led us to develop new methods of glycosylation such as the 2'-carboxybenzyl (CB) glycoside method, the glycosyl pentenoate/phenylselenyl trifluoromethanesulfonate (PhSeOTf) method, and the glycosyl aryl phthalate method. Highly stereoselective beta-mannopyranosylations were achieved by employing the CB glycoside and the glycosyl pentenoate/PhSeOTf methods. The CB glycoside method was also utilized for stereoselective 2-deoxyglycosylation, beta-arabinofuranosylation, and alpha-galactofuranosylation. In addition, these lactonization-mediated methods of glycosylation were employed for the synthesis of complex oligosaccharides. In particular, the CB glycoside method was successfully applied to the synthesis of repeating oligosaccharide subunits of the O-polysaccharide of the lipopolysaccharide from Danish Helicobacter pylori strains and Escherichia coli 077, the synthesis of oligoarabinofuranosides in mycobacterial cell walls, and the total synthesis of antineoplastic agelagalastatin. PMID:18302265

  17. Overexpression of a homogeneous oligosaccharide with 13C labeling by genetically engineered yeast strain.

    PubMed

    Kamiya, Yukiko; Yamamoto, Sayoko; Chiba, Yasunori; Jigami, Yoshifumi; Kato, Koichi

    2011-08-01

    This report describes a novel method for overexpression of (13)C-labeled oligosaccharides using genetically engineered Saccharomyces cerevisiae cells, in which a homogeneous high-mannose-type oligosaccharide accumulates because of deletions of genes encoding three enzymes involved in the processing pathway of asparagine-linked oligosaccharides in the Golgi complex. Using uniformly (13)C-labeled glucose as the sole carbon source in the culture medium of these engineered yeast cells, high yields of the isotopically labeled Man(8)GlcNAc(2) oligosaccharide could be successfully harvested from glycoprotein extracts of the cells. Furthermore, (13)C labeling at selected positions of the sugar residues in the oligosaccharide could be achieved using a site-specific (13)C-enriched glucose as the metabolic precursor, facilitating NMR spectral assignments. The (13)C-labeling method presented provides the technical basis for NMR analyses of structures, dynamics, and interactions of larger, branched oligosaccharides.

  18. Postcolumn HPLC Detection of Mono- and Oligosaccharides with a Chemosensor

    PubMed Central

    Kim, Kyu Kwang; Escobedo, Jorge O.; St. Luce, Nadia N.; Rusin, Oleksandr; Wong, Douglas; Strongin, Robert M.

    2012-01-01

    Novel chromophoric compound 1 promotes the HPLC postcolumn detection of mono- and oligosaccharides. The detection of chromatographic peaks in the visible region for glucose, fructose, maltodextrins, sialic acid, and a ganglioside can be accomplished with a standard UV–vis detector. The use of selective, reversible binding agents in automated HPLC assays should allow for improved monitoring of specific analytes as well as material recovery. PMID:14682751

  19. Human milk oligosaccharides are differentially metabolised in neonatal rats.

    PubMed

    Jantscher-Krenn, Evelyn; Marx, Carolin; Bode, Lars

    2013-08-01

    Human milk oligosaccharides (HMO) are complex glycans that are highly abundant in human milk, but not in infant formula. Accumulating data, mostly from in vitro and animal studies, indicate that HMO benefit the breast-fed infant in multiple ways and in different target organs. In vitro incubation studies suggest that HMO can resist the low pH in the infant's stomach and enzymatic degradation in the small intestine and reach the colon in the same composition as in the mother's milk. The oligosaccharide composition in faeces of breast-fed infants is, however, very different from that in the mother's milk, raising questions on when, where and how HMO are metabolised between ingestion and excretion. To answer some of these questions, we established a pulse-chase model in neonatal rats and analysed HMO profiles to track their composition over time in five consecutive equal-length intestinal segments as well as in serum and urine. The relative abundance of individual HMO changed significantly within the first 2 h after feeding and already in the segments of the small intestine prior to reaching the colon. Only 3'-sialyllactose, the major oligosaccharide in rat milk, and hardly any other HMO appeared in the serum and the urine of HMO-fed rats, indicating a selective absorption of rat milk-specific oligosaccharides. The present results challenge the paradigm that HMO reach the colon and other target organs in the same composition as originally secreted with the mother's milk. The present results also raise questions on whether rats and other animals represent suitable models to study the effects of HMO.

  20. Milk Oligosaccharides over Time of Lactation from Different Dog Breeds

    PubMed Central

    Macias Rostami, Shirin; Bénet, Thierry; Spears, Julie; Reynolds, Arleigh; Satyaraj, Ebenezer; Sprenger, Norbert; Austin, Sean

    2014-01-01

    The partnership of humans and dogs goes back to over 10'000 years, yet relatively little is known about a dog's first extra-uterine nutrition particularly when it comes to milk oligosaccharides. We set out to identify and quantify milk oligosaccharides over the course of lactation from different dog breeds (Labrador retriever, Schnauzer and 3 Alaskan husky crossbreeds). To this end, 2 different chromatographic methods with fluorescence and mass spectrometry detection were developed and one was validated for quantification. Besides lactose and lactose-sulphate, we identified 2 different trisaccharides composed of 3 hexose units, 3′sialyllactose (3′SL), 6′sialyllactose (6′SL), 2′fucosyllactose (2′FL), and a tetrasaccharide composed of 2 hexoses, an N-acetylhexosamine and a deoxyhexose. 3′SL was present at the highest levels in milk of all dog breeds starting at around 7.5 g/L and dropping to about 1.5 g/L in the first 10 days of lactation. 6′SL was about 10 times less abundant and 2′FL and the tetrasaccharide had rather varying levels in the milk of the different breeds with the tetrasaccharide only detectable in the Alaskan husky crossbreeds. The longitudinal and quantitative data of milk oligosaccharides from different dog breeds are an important basis to further our understanding on their specific biological roles and also on the specific nutritional requirements of lactating puppies. PMID:24924915

  1. Synthesis of heparin-like oligosaccharides on polymer supports.

    PubMed

    Ojeda, Rafael; Terentí, Olimpia; de Paz, José-Luis; Martín-Lomas, Manuel

    2004-01-01

    The biological functions of a variety of proteins are regulated by heparan sulfate glycosaminoglycans. In order to facilitate the elucidation of the molecular basis of glycosaminoglycan-protein interactions we have developed syntheses of heparin-like oligosaccharides on polymer supports. A completely stereoselective strategy previously developed by us for the synthesis of these oligosaccharides in solution has been extended to the solid phase using an acceptor-bound approach. Both a soluble polymer support and a polyethylene glycol-grafted polystyrene resin have been used and different strategies for the attachment of the acceptor to the support have been explored. The attachment of fully protected disaccharide building blocks to a soluble support through the carboxylic group of the uronic acid unit by a succinic ester linkage, the use of trichloroacetimidates as glycosylating agents and of a functionalized Merryfield type resin for the capping process allowed for the construction of hexasaccharide and octasaccharide fragments containing the structural motif of the regular region of heparin. This strategy may facilitate the synthesis of glycosaminoglycan oligosaccharides by using the required building blocks in the glycosylation sequence. PMID:15486451

  2. Cellulase-assisted extraction of oligosaccharides from defatted rice bran.

    PubMed

    Patindol, J; Wang, L; Wang, Y-J

    2007-11-01

    Defatted rice bran was subjected to cellulase treatment in order to increase its extractable oligosaccharides. Various combinations of enzyme concentration (0%, 0.5%, 1.0%, and 2.0%), temperature (room, 30, 40, and 50 degrees C), and time (1, 3, 5, and 16 h) were tested to identify the optimum extraction conditions. The saccharide content and composition of the extracts were analyzed by high-performance anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD). Digestibility was assayed in vitro with human salivary and porcine pancreatic alpha-amylases. Extraction yield ranged from 13.4% (without cellulase) to 39.9% (with 2% cellulase). Total carbohydrates, reducing sugars, and crude protein of the dried extracts ranged from 69.2% to 87.2%, 18.7% to 62.3%, and 7.1% to 22.3%, respectively. Mono- and disaccharides constituted more than 50% of the total carbohydrates in the extracts. Inherent oligosaccharides and those produced by cellulolysis made up less than 25%. The in vitro digestibility of the extracts by alpha-amylases was lower compared with that of the original rice bran sample and potato dextrin, which could be attributed to the increased concentrations of oligosaccharides and reducing sugars.

  3. Synthesis of heparin-like oligosaccharides on polymer supports.

    PubMed

    Ojeda, Rafael; Terentí, Olimpia; de Paz, José-Luis; Martín-Lomas, Manuel

    2004-01-01

    The biological functions of a variety of proteins are regulated by heparan sulfate glycosaminoglycans. In order to facilitate the elucidation of the molecular basis of glycosaminoglycan-protein interactions we have developed syntheses of heparin-like oligosaccharides on polymer supports. A completely stereoselective strategy previously developed by us for the synthesis of these oligosaccharides in solution has been extended to the solid phase using an acceptor-bound approach. Both a soluble polymer support and a polyethylene glycol-grafted polystyrene resin have been used and different strategies for the attachment of the acceptor to the support have been explored. The attachment of fully protected disaccharide building blocks to a soluble support through the carboxylic group of the uronic acid unit by a succinic ester linkage, the use of trichloroacetimidates as glycosylating agents and of a functionalized Merryfield type resin for the capping process allowed for the construction of hexasaccharide and octasaccharide fragments containing the structural motif of the regular region of heparin. This strategy may facilitate the synthesis of glycosaminoglycan oligosaccharides by using the required building blocks in the glycosylation sequence.

  4. Milk oligosaccharides over time of lactation from different dog breeds.

    PubMed

    Macias Rostami, Shirin; Bénet, Thierry; Spears, Julie; Reynolds, Arleigh; Satyaraj, Ebenezer; Sprenger, Norbert; Austin, Sean

    2014-01-01

    The partnership of humans and dogs goes back to over 10'000 years, yet relatively little is known about a dog's first extra-uterine nutrition particularly when it comes to milk oligosaccharides. We set out to identify and quantify milk oligosaccharides over the course of lactation from different dog breeds (Labrador retriever, Schnauzer and 3 Alaskan husky crossbreeds). To this end, 2 different chromatographic methods with fluorescence and mass spectrometry detection were developed and one was validated for quantification. Besides lactose and lactose-sulphate, we identified 2 different trisaccharides composed of 3 hexose units, 3'sialyllactose (3'SL), 6'sialyllactose (6'SL), 2'fucosyllactose (2'FL), and a tetrasaccharide composed of 2 hexoses, an N-acetylhexosamine and a deoxyhexose. 3'SL was present at the highest levels in milk of all dog breeds starting at around 7.5 g/L and dropping to about 1.5 g/L in the first 10 days of lactation. 6'SL was about 10 times less abundant and 2'FL and the tetrasaccharide had rather varying levels in the milk of the different breeds with the tetrasaccharide only detectable in the Alaskan husky crossbreeds. The longitudinal and quantitative data of milk oligosaccharides from different dog breeds are an important basis to further our understanding on their specific biological roles and also on the specific nutritional requirements of lactating puppies.

  5. Studies on the asparagine-linked oligosaccharides from cartilage-specific proteoglycan

    SciTech Connect

    Cioffi, L.C.

    1987-01-01

    Chondrocytes synthesize and secrete a cartilage-specific proteoglycan (PG-H) as one of their major products. This proteoglycan has attached to it several types of carbohydrate chains, including chondroitin sulfate, keratan sulfate, O-linked oligosaccharides, and asparagine-linked oligosaccharides. The asparagine-linked oligosaccharides found on PG-H were investigated in these studies. Methodology was developed for the isolation and separation of standard of standard complex and high mannose type oligosaccharides. This included digesting glycoproteins with N-glycanase and separation of the oligosaccharides according to type by concanavalin-A lectin chromatography. The different oligosaccharide types were then analyzed by high pressure liquid chromatography. This methodology was used in the subsequent studies on the PG-H asparagine-linked oligosaccharides. Initially, the asparagine-linked oligosaccharides recovered from the culture medium (CM) and cell-associated (Ma) fractions of PG-H from of tibial chondrocytes were labeled with (/sup 3/H)-mannose and the oligosaccharides were isolated and analyzed.

  6. High-performance liquid chromatography of monosaccharides and oligosaccharides in a complex biological matrix.

    PubMed

    Peelen, G O; de Jong, J G; Wevers, R A

    1991-11-01

    Analysis of oligosaccharides in complex biological matrices is hampered by the fact that oligosaccharides, closely related in structure, are difficult to separate from each other and that conventional detection procedures (refraction index and uv detection) are not specific enough for carbohydrates. Prepurification of samples by procedures like desalting or gel filtration is often used but can lead to the loss of specific oligosaccharides. We have used pellicular anion chromatography in combination with a postcolumn reaction for reducing carbohydrates based on 4-aminobenzoylhydrazide. This procedure not only detected normal mono- and oligosaccharides but N-acetylhexosamines and reducing N-acetylhexosamine containing oligosaccharides as well. A sensitivity of about 20-25 pmol for non-GlcNAc containing mono- or oligosaccharides and between 30-50 pmol for GlcNAc or oligosaccharides with GlcNAc at the reducing side was reached. The postcolumn detection was compared with pulsed amperometric detection and appeared to be more specific for mono- and oligosaccharides. Except for deproteination to protect the column, no further sample preparation was needed with this system for our application (urines). In this way pellicular anion chromatography in combination with this postcolumn reaction reaction to be a sensitive and specific HPLC procedure for analysis of monosaccharides and oligosaccharides in complex biological matrices. PMID:1799219

  7. Structural study of asparagine-linked oligosaccharide moiety of taste-modifying protein, miraculin.

    PubMed

    Takahashi, N; Hitotsuya, H; Hanzawa, H; Arata, Y; Kurihara, Y

    1990-05-15

    The structures of the N-linked oligosaccharides of miraculin, which is a taste modifying glycoprotein isolated from miracle fruits, berries of Richadella dulcifica, are reported. Asparagine-linked oligosaccharides were released from the protein by glycopeptidase (almond) digestion. The reducing ends of the oligosaccharide chains thus obtained were aminated with a fluorescent reagent, 2-aminopyridine, and the mixture of pyridylamino derivatives of the oligosaccharides was separated by high performance liquid chromatography (HPLC) on an ODS-silica column. More than five kinds of oligosaccharide fractions were separated by the one chromatographic run. The structure of each oligosaccharide thus isolated was analyzed by a combination of sequential exoglycosidase digestion and another kind of HPLC with an amidesilica column. Furthermore, high resolution proton nuclear magnetic resonance (1H NMR) measurements were carried out. It was found that 1) five oligosaccharides obtained are a series of compounds with xylose-containing common structural core, Xyl beta 1----2 (Man alpha 1----6) Man beta 1----4-GlcNAc beta 1----4 (Fuca1----3)GlcNAc, 2) a variety of oligosaccharide structures are significant for two glycosylation sites, Asn-42 and Asn-186, and 3) two new oligosaccharides, B and D, with unusual structures containing monoantennary complex-type were characterized. (formula; see text) PMID:2335505

  8. Interference with glycosylation of glycoproteins. Inhibition of formation of lipid-linked oligosaccharides in vivo.

    PubMed Central

    Datema, R; Schwarz, R T

    1979-01-01

    Influenza-virus-infected cells were labelled with radioactive sugars and extracted to give fractions containing lipid-linked oligosaccharides and glycoproteins. The oligosaccharides linked to lipid were of the 'high-mannose' type and contained glucose. In the glycoprotein fraction, radioactivity was associated with virus proteins and found to occur predominantly in the 'high-mannose' type of glycopeptides. In the presence of the inhibitors 2-deoxy-D-glucose, 2-deoxy-2-amino-D-glucose (glucosamine), 2-deoxy-2-fluoro-D-glucose and 2-deoxy-2-fluoro-D-mannose incorporation of radiolabelled sugars into lipid- and protein-linked oligosaccharides was decreased. Kinetic analysis showed that the inhibitors affected first the assembly of lipid-linked oligosaccharides and then protein glycosylation after a lag period. During inhibition by deoxyglucose and the fluoro sugars lipid-linked oligosaccharides were formed that contained oligosaccharides of decreased molecular weight. No such aberrant forms were found during inhibition by glucosamine. In the case of inhibition by deoxyglucose it was shown that the aberrant oligosaccharides were not transferred to protein. Inhibition of formation of lipid-linked oligosaccharides by deoxyglucose and fluoro sugars was antagonized by mannose, in which case oligosaccharides of normal molecular weight were formed. The inhibition by glucosamine was reversed by its removal from the medium. The reversible effects of these inhibitors exemplify their usefulness as tools in the study of glycosylation processes. PMID:534512

  9. An Update on Oligosaccharides and Their Esters from Traditional Chinese Medicines: Chemical Structures and Biological Activities

    PubMed Central

    Chen, Xiang-Yang; Wang, Ru-Feng; Liu, Bin

    2015-01-01

    A great number of naturally occurring oligosaccharides and oligosaccharide esters have been isolated from traditional Chinese medicinal plants, which are used widely in Asia and show prominent curative effects in the prevention and treatment of kinds of diseases. Numerous in vitro and in vivo experiments have revealed that oligosaccharides and their esters exhibited various activities, including antioxidant, antidepressant, cytotoxic, antineoplastic, anti-inflammatory, neuroprotective, cerebral protective, antidiabetic, plant growth-regulatory, and immunopotentiating activities. This review summarizes the investigations on the distribution, chemical structures, and bioactivities of natural oligosaccharides and their esters from traditional Chinese medicines between 2003 and 2013. PMID:25861364

  10. Structural analysis of underivatized neutral human milk oligosaccharides in the negative ion mode by nano-electrospray MS(n) (part 1: methodology).

    PubMed

    Pfenninger, Anja; Karas, Michael; Finke, Berndt; Stahl, Bernd

    2002-11-01

    Underivatized neutral oligosaccharides from human milk were analyzed by nano-electrospray ionization (ESI) using a quadrupole ion trap mass spectrometer (QIT-MS) in the negative-ion mode. Under these conditions neutral oligosaccharides are observed as deprotonated molecules [M-H]- with high intensity. CID-experiments of these species with the charge localized at the reducing end lead to C-type fragment ions forming a "new" reducing end. Fragmentations are accompanied by cross-ring cleavages that yield information about linkages of internal monosaccharides. Several isomeric compounds with distinct structural features, such as different glycosidic linkages, fucosylation and branching sites were investigated. The rules governing the fragmentation behavior of this class of oligosaccharides were elucidated and tested for a representative number of certain isomeric glycoforms using the MS/MS and MS(n) capabilities of the QIT. On the basis of the specific fragmentation behavior of deprotonated molecules, the position of fucoses and the linkage type (Gal beta-->3 GlcNAc or Gal beta1-->4 GlcNAc) could be determined and linear and branched could be differentiated. Rules could be established which can be applied in further investigations of these types of oligosaccharides even from heterogenous mixtures. PMID:12443024

  11. Transfer of two oligosaccharides to protein in a Chinese hamster ovary cell B211 which utilizes polyprenol for its N-linked glycosylation intermediates.

    PubMed

    Kaiden, A; Rosenwald, A G; Cacan, R; Verbert, A; Krag, S S

    1998-10-15

    B211, a glycosylation mutant isolated from Chinese hamster ovary cells, synthesizes 10- to 15-fold less Glc3Man9GlcNAc2-P-P-lipid, the substrate used by the oligosaccharide transferase in the synthesis of asparagine-linked glycoproteins. B211 cells are also 10- to 15-fold deficient in the glucosylation of oligosaccharide-lipid. Despite these properties, protein glycosylation in B211 cells proceeds at a level similar to (50% of) parental cells. We asked whether the near wild-type level of glycosylation was due to the transfer of alternative oligosaccharide structures to protein in B211 cells. The aberrant size of [35S]methionine-labeled VSV G protein and the increased percentage of endoglycosidase H-resistant tryptic peptides as compared to parental cells supported this hypothesis. B211 cells were labeled with [2-3H]mannose either for 1 min or for 1 h in the presence of glycoprotein-processing inhibitors so that the oligosaccharides initially transferred to protein could be analyzed. In addition to Glc3Man9GlcNAc2, a second, endoglycosidase H-resistant oligosaccharide was transferred whose structure was determined by alpha-mannosidase digestion, gel filtration chromatography, and HPLC to be Glc0,1Man5GlcNAc2. Finally, since the synthesis of reduced amounts of Glc3Man9GlcNAc2-P-P-lipid was also a phenotype seen in another glycosylation mutant, Lec9, we analyzed the long-chain prenol in B211 cells. B211 cells synthesized and utilized polyprenol rather than dolichol for all N-linked glycosylation intermediates as determined by HPLC analysis of [3H]mevalonate-labeled lipids. Cell fusions analyzed by similar techniques indicated that B211, originally isolated as a concanavalin A-resistant cell line, is in the Lec9 complementation group.

  12. Stool characteristics of infants receiving short-chain galacto-oligosaccharides and long-chain fructo-oligosaccharides: a review.

    PubMed

    Scholtens, Petra A M J; Goossens, Dominique A M; Staiano, Annamaria

    2014-10-01

    Human milk is considered to be the optimal source of infant nutrition. Some of the benefits of breastfeeding have been ascribed to human milk oligosaccharides (HMO). For instance, HMO can affect faecal characteristics such as stool consistency and stool frequency. Such effects on stool characteristics can be beneficial for young infants as hard stools and even constipation is common in that age group. Prebiotics in infant milk formulas have been introduced to exert similar functionalities. A specific mixture of prebiotics consists of a combination of short chain galacto-oligosaccharides and long-chain fructo-oligosaccharides (scGOS/lcFOS) in a ratio of 9:1. This specific mixture has been developed to closely resemble the molecular size composition of HMO. Many studies have been done with scGOS/lcFOS, and indicators for digestive comfort have often been included as secondary outcomes. This review summarizes the effects of scGOS/lcFOS (9:1) on stool consistency, stool frequency and transit time in healthy term and preterm infants. In several of the studies with scGOS/lcFOS in a ratio of 9:1 in infant milk formulas, positive effects of this mixture on stool characteristics such as stool consistency and stool frequency were observed. As stool consistency was shown to be correlated to whole gut transit time, scGOS/lcFOS can be hypothesised to have a role in reducing the risk of constipation.

  13. Chemical characterization of milk oligosaccharides of the koala (Phascolarctos cinereus).

    PubMed

    Urashima, Tadasu; Taufik, Epi; Fukuda, Rino; Nakamura, Tadashi; Fukuda, Kenji; Saito, Tadao; Messer, Michael

    2013-11-01

    Previous structural characterizations of marsupial milk oligosaccharides had been performed in only two macropod species, the tammar wallaby and the red kangaroo. To clarify the homology and heterogeneity of milk oligosaccharides among marsupial species, which could provide information on their evolution, the oligosaccharides of the koala milk carbohydrate fraction were characterized in this study. Neutral and acidic oligosaccharides were separated from the carbohydrate fraction of milk of the koala, a non-macropod marsupial, and characterized by (1)H-nuclear magnetic resonance spectroscopy. The structures of the neutral saccharides were found to be Gal(β1-4)Glc (lactose), Gal(β1-3)Gal(β1-4)Glc (3'-galactosyllactose), Gal(β1-3)Gal(β1-3)Gal(β1-4)Glc (3',3″-digalactosyllactose), Gal(β1-3)[Gal(β1-4)GlcNAc(β1-6)]Gal(β1-4)Glc (lacto-N-novopentaose I) and Gal(β1-3){Gal(β1-4)[Fuc(α1-3)]GlcNAc(β1-6)}Gal(β1-4)Glc (fucosyl lacto-N-novopentaose I), while those of the acidic saccharides were Neu5Ac(α2-3)Gal(β1-4)Glc (3'-SL), Neu5Ac(α2-3)Gal(β1-3)Gal(β1-4)Gal (sialyl 3'-galactosyllactose), Neu5Ac(α2-3)Gal(β1-3)[Gal(β1-4)GlcNAc(β1-6)]Gal(β1-4)Glc (sialyl lacto-N-novopentaose a), Gal(β1-3)[Neu5Ac(α2-6)Gal(β1-4)GlcNAc(β1-6)]Gal(β1-4)Glc (sialyl lacto-N-novopentaose b), Gal(β1-3)[Neu5Ac(α2-3)Gal(β1-4)GlcNAc(β1-6)]Gal(β1-4)Glc (sialyl lacto-N-novopentaose c), and Neu5Ac(α2-3)Gal(β1-3){Gal(β1-4)[Fuc(α1-3)]GlcNAc(β1-6)}Gal(β1-4)Glc (fucosyl sialyl lacto-N-novopentaose a). The neutral oligosaccharides, other than fucosyl lacto-N-novopentaose I, a novel hexasaccharide, had been found in milk of the tammar wallaby, a macropod marsupial, while the acidic oligosaccharides, other than fucosyl sialyl lacto-N-novopentaose a had been identified in milk carbohydrate of the red kangaroo. The presence of fucosyl oligosaccharides is a significant feature of koala milk, in which it differs from milk of the tammar wallaby and the red kangaroo.

  14. Novel, Precise, Accurate Ion-Pairing Method to Determine the Related Substances of the Fondaparinux Sodium Drug Substance: Low-Molecular-Weight Heparin

    PubMed Central

    Deshpande, Amol A.; Madhavan, P.; Deshpande, Girish R.; Chandel, Ravi Kumar; Yarbagi, Kaviraj M.; Joshi, Alok R.; Moses Babu, J.; Murali Krishna, R.; Rao, I. M.

    2016-01-01

    Fondaparinux sodium is a synthetic low-molecular-weight heparin (LMWH). This medication is an anticoagulant or a blood thinner, prescribed for the treatment of pulmonary embolism and prevention and treatment of deep vein thrombosis. Its determination in the presence of related impurities was studied and validated by a novel ion-pair HPLC method. The separation of the drug and its degradation products was achieved with the polymer-based PLRPs column (250 mm × 4.6 mm; 5 μm) in gradient elution mode. The mixture of 100 mM n-hexylamine and 100 mM acetic acid in water was used as buffer solution. Mobile phase A and mobile phase B were prepared by mixing the buffer and acetonitrile in the ratio of 90:10 (v/v) and 20:80 (v/v), respectively. Mobile phases were delivered in isocratic mode (2% B for 0–5 min) followed by gradient mode (2–85% B in 5–60 min). An Evaporative Light Scattering Detector (ELSD) was connected to the LC system to detect the responses of chromatographic separation. Further, the drug was subjected to stress studies for acidic, basic, oxidative, photolytic, and thermal degradations as per ICH guidelines and the drug was found to be labile in acid, base hydrolysis, and oxidation, while stable in neutral, thermal, and photolytic degradation conditions. The method provided linear responses over the concentration range of the LOQ to 0.30% for each impurity with respect to the analyte concentration of 12.5 mg/mL, and regression analysis showed a correlation coefficient value (r2) of more than 0.99 for all the impurities. The LOD and LOQ were found to be 1.4 µg/mL and 4.1 µg/mL, respectively, for fondaparinux. The developed ion-pair method was validated as per ICH guidelines with respect to accuracy, selectivity, precision, linearity, and robustness. PMID:27110496

  15. Novel, Precise, Accurate Ion-Pairing Method to Determine the Related Substances of the Fondaparinux Sodium Drug Substance: Low-Molecular-Weight Heparin.

    PubMed

    Deshpande, Amol A; Madhavan, P; Deshpande, Girish R; Chandel, Ravi Kumar; Yarbagi, Kaviraj M; Joshi, Alok R; Moses Babu, J; Murali Krishna, R; Rao, I M

    2016-01-01

    Fondaparinux sodium is a synthetic low-molecular-weight heparin (LMWH). This medication is an anticoagulant or a blood thinner, prescribed for the treatment of pulmonary embolism and prevention and treatment of deep vein thrombosis. Its determination in the presence of related impurities was studied and validated by a novel ion-pair HPLC method. The separation of the drug and its degradation products was achieved with the polymer-based PLRPs column (250 mm × 4.6 mm; 5 μm) in gradient elution mode. The mixture of 100 mM n-hexylamine and 100 mM acetic acid in water was used as buffer solution. Mobile phase A and mobile phase B were prepared by mixing the buffer and acetonitrile in the ratio of 90:10 (v/v) and 20:80 (v/v), respectively. Mobile phases were delivered in isocratic mode (2% B for 0-5 min) followed by gradient mode (2-85% B in 5-60 min). An Evaporative Light Scattering Detector (ELSD) was connected to the LC system to detect the responses of chromatographic separation. Further, the drug was subjected to stress studies for acidic, basic, oxidative, photolytic, and thermal degradations as per ICH guidelines and the drug was found to be labile in acid, base hydrolysis, and oxidation, while stable in neutral, thermal, and photolytic degradation conditions. The method provided linear responses over the concentration range of the LOQ to 0.30% for each impurity with respect to the analyte concentration of 12.5 mg/mL, and regression analysis showed a correlation coefficient value (r(2)) of more than 0.99 for all the impurities. The LOD and LOQ were found to be 1.4 µg/mL and 4.1 µg/mL, respectively, for fondaparinux. The developed ion-pair method was validated as per ICH guidelines with respect to accuracy, selectivity, precision, linearity, and robustness. PMID:27110496

  16. Towards precision medicine.

    PubMed

    Ashley, Euan A

    2016-08-16

    There is great potential for genome sequencing to enhance patient care through improved diagnostic sensitivity and more precise therapeutic targeting. To maximize this potential, genomics strategies that have been developed for genetic discovery - including DNA-sequencing technologies and analysis algorithms - need to be adapted to fit clinical needs. This will require the optimization of alignment algorithms, attention to quality-coverage metrics, tailored solutions for paralogous or low-complexity areas of the genome, and the adoption of consensus standards for variant calling and interpretation. Global sharing of this more accurate genotypic and phenotypic data will accelerate the determination of causality for novel genes or variants. Thus, a deeper understanding of disease will be realized that will allow its targeting with much greater therapeutic precision. PMID:27528417

  17. Cellular effects of deoxynojirimycin analogues: inhibition of N-linked oligosaccharide processing and generation of free glucosylated oligosaccharides

    PubMed Central

    2004-01-01

    In the accompanying paper [Mellor, Neville, Harvey, Platt, Dwek and Butters (2004) Biochem. J. 381, 861–866] we treated HL60 cells with N-alk(en)yl-deoxynojirimycin (DNJ) compounds to inhibit glucosphingolipid (GSL) biosynthesis and identified a number of non-GSL-derived, small, free oligosaccharides (FOS) most likely produced due to inhibition of the oligosaccharide-processing enzymes α-glucosidases I and II. When HL60 cells were treated with concentrations of N-alk(en)ylated DNJ analogues that inhibited GSL biosynthesis completely, N-butyl- and N-nonyl-DNJ inhibited endoplasmic reticulum (ER) glucosidases I and II, but octadecyl-DNJ did not, probably due to the lack of ER lumen access for this novel, long-chain derivative. Glucosidase inhibition resulted in the appearance of free Glc1–3Man structures, which is evidence of Golgi glycoprotein endomannosidase processing of oligosaccharides with retained glucose residues. Additional large FOS was also detected in cells following a 16 h treatment with N-butyl- and N-nonyl-DNJ. When these FOS structures (>30, including >20 species not present in control cells) were characterized by enzyme digests and MALDI-TOF (matrix-assisted laser-desorption ionization–time-of-flight) MS, all were found to be polymannose-type oligosaccharides, of which the majority were glucosylated and had only one reducing terminal GlcNAc (N-acetylglucosamine) residue (FOS-GlcNAc1), demonstrating a cytosolic location. These results support the proposal that the increase in glucosylated FOS results from enzyme-mediated cytosolic cleavage of oligosaccharides from glycoproteins exported from the ER because of misfolding or excessive retention. Importantly, the present study characterizes the cellular properties of DNJs further and demonstrates that side-chain modifications allow selective inhibition of protein and lipid glycosylation pathways. This represents the most detailed characterization of the FOS structures arising from ER

  18. Novel high-molecular weight fucosylated milk oligosaccharides identified in dairy streams.

    PubMed

    Mehra, Raj; Barile, Daniela; Marotta, Mariarosaria; Lebrilla, Carlito B; Chu, Caroline; German, J Bruce

    2014-01-01

    Oligosaccharides are the third largest component in human milk. This abundance is remarkable because oligosaccharides are not digestible by the newborn, and yet they have been conserved and amplified during evolution. In addition to encouraging the growth of a protective microbiota dominated by bifidobacteria, oligosaccharides have anti-infective activity, preventing pathogens from binding to intestinal cells. Although it would be advantageous adding these valuable molecules to infant milk formula, the technologies to reproduce the variety and complexity of human milk oligosaccharides by enzymatic/organic synthesis are not yet mature. Consequently, there is an enormous interest in alternative sources of these valuable oligosaccharides. Recent research has demonstrated that bovine milk and whey permeate also contain oligosaccharides. Thus, a thorough characterization of oligosaccharides in bovine dairy streams is an important step towards fully assessing their specific functionalities. In this study, bovine milk oligosaccharides (BMOs) were concentrated by membrane filtration from a readily available dairy stream called "mother liquor", and analyzed by high accuracy MALDI FT-ICR mass spectrometry. The combination of HPLC and accurate mass spectrometry allowed the identification of ideal processing conditions leading to the production of Kg amount of BMO enriched powders. Among the BMOs identified, 18 have high-molecular weight and corresponded in size to the most abundant oligosaccharides present in human milk. Notably 6 oligosaccharides contained fucose, a sugar monomer that is highly abundant in human milk, but is rarely observed in bovine milk. This work shows that dairy streams represent a potential source of complex milk oligosaccharides for commercial development of unique dairy ingredients in functional foods that reproduce the benefits of human milk.

  19. Novel High-Molecular Weight Fucosylated Milk Oligosaccharides Identified in Dairy Streams

    PubMed Central

    Mehra, Raj; Barile, Daniela; Marotta, Mariarosaria; Lebrilla, Carlito B.; Chu, Caroline; German, J. Bruce

    2014-01-01

    Oligosaccharides are the third largest component in human milk. This abundance is remarkable because oligosaccharides are not digestible by the newborn, and yet they have been conserved and amplified during evolution. In addition to encouraging the growth of a protective microbiota dominated by bifidobacteria, oligosaccharides have anti-infective activity, preventing pathogens from binding to intestinal cells. Although it would be advantageous adding these valuable molecules to infant milk formula, the technologies to reproduce the variety and complexity of human milk oligosaccharides by enzymatic/organic synthesis are not yet mature. Consequently, there is an enormous interest in alternative sources of these valuable oligosaccharides. Recent research has demonstrated that bovine milk and whey permeate also contain oligosaccharides. Thus, a thorough characterization of oligosaccharides in bovine dairy streams is an important step towards fully assessing their specific functionalities. In this study, bovine milk oligosaccharides (BMOs) were concentrated by membrane filtration from a readily available dairy stream called “mother liquor”, and analyzed by high accuracy MALDI FT-ICR mass spectrometry. The combination of HPLC and accurate mass spectrometry allowed the identification of ideal processing conditions leading to the production of Kg amount of BMO enriched powders. Among the BMOs identified, 18 have high-molecular weight and corresponded in size to the most abundant oligosaccharides present in human milk. Notably 6 oligosaccharides contained fucose, a sugar monomer that is highly abundant in human milk, but is rarely observed in bovine milk. This work shows that dairy streams represent a potential source of complex milk oligosaccharides for commercial development of unique dairy ingredients in functional foods that reproduce the benefits of human milk. PMID:24810963

  20. The Galectin CvGal1 from the Eastern Oyster (Crassostrea virginica) Binds to Blood Group A Oligosaccharides on the Hemocyte Surface*

    PubMed Central

    Feng, Chiguang; Ghosh, Anita; Amin, Mohammed N.; Giomarelli, Barbara; Shridhar, Surekha; Banerjee, Aditi; Fernández-Robledo, José A.; Bianchet, Mario A.; Wang, Lai-Xi; Wilson, Iain B. H.; Vasta, Gerardo R.

    2013-01-01

    The galectin CvGal1 from the eastern oyster (Crassostrea virginica), which possesses four tandemly arrayed carbohydrate recognition domains, was previously shown to display stronger binding to galactosamine and N-acetylgalactosamine relative to d-galactose. CvGal1 expressed by phagocytic cells is “hijacked” by the parasite Perkinsus marinus to enter the host, where it proliferates and causes systemic infection and death. In this study, a detailed glycan array analysis revealed that CvGal1 preferentially recognizes type 2 blood group A oligosaccharides. Homology modeling of the protein and its oligosaccharide ligands supported this preference over type 1 blood group A and B oligosaccharides. The CvGal ligand models were further validated by binding, inhibition, and competitive binding studies of CvGal1 and ABH-specific monoclonal antibodies with intact and deglycosylated glycoproteins, hemocyte extracts, and intact hemocytes and by surface plasmon resonance analysis. A parallel glycomic study carried out on oyster hemocytes (Kurz, S., Jin, C., Hykollari, A., Gregorich, D., Giomarelli, B., Vasta, G. R., Wilson, I. B. H., and Paschinger, K. (2013) J. Biol. Chem. 288,) determined the structures of oligosaccharides recognized by CvGal1. Proteomic analysis of the hemocyte glycoproteins identified β-integrin and dominin as CvGal1 “self”-ligands. Despite strong CvGal1 binding to P. marinus trophozoites, no binding of ABH blood group antibodies was observed. Thus, parasite glycans structurally distinct from the blood group A oligosaccharides on the hemocyte surface may function as potentially effective ligands for CvGal1. We hypothesize that carbohydrate-based mimicry resulting from the host/parasite co-evolution facilitates CvGal1-mediated cross-linking to β-integrin, located on the hemocyte surface, leading to cell activation, phagocytosis, and host infection. PMID:23824193

  1. Precision powder feeder

    DOEpatents

    Schlienger, M. Eric; Schmale, David T.; Oliver, Michael S.

    2001-07-10

    A new class of precision powder feeders is disclosed. These feeders provide a precision flow of a wide range of powdered materials, while remaining robust against jamming or damage. These feeders can be precisely controlled by feedback mechanisms.

  2. The immunologically active oligosaccharides isolated from wheatgrass modulate monocytes via Toll-like receptor-2 signaling.

    PubMed

    Tsai, Chia-Che; Lin, Chih-Ru; Tsai, Hsien-Yu; Chen, Chia-Jung; Li, Wen-Tai; Yu, Hui-Ming; Ke, Yi-Yu; Hsieh, Wei-Ying; Chang, Cheng-Yen; Wu, Ying-Ta; Wu, Chung-Yi; Chen, Shui-Tein; Wong, Chi-Huey

    2013-06-14

    Wheatgrass is one of the most widely used health foods, but its functional components and mechanisms remain unexplored. Herein, wheatgrass-derived oligosaccharides (WG-PS3) were isolated and found to induce CD69 and Th1 cytokine expression in human peripheral blood mononuclear cells. In particular, WG-PS3 directly activated the purified monocytes by inducing the expression of CD69, CD80, CD86, IL-12, and TNF-α but affected NK and T cells only in the presence of monocytes. After further purification and structural analysis, maltoheptaose was identified from WG-PS3 as an immunomodulator. Maltoheptaose activated monocytes via Toll-like receptor 2 (TLR-2) signaling, as discovered by pretreatment of blocking antibodies against Toll-like receptors (TLRs) and also determined by click chemistry. This study is the first to reveal the immunostimulatory component of wheatgrass with well defined molecular structures and mechanisms. PMID:23629653

  3. Precision spectroscopy of Helium

    SciTech Connect

    Cancio, P.; Giusfredi, G.; Mazzotti, D.; De Natale, P.; De Mauro, C.; Krachmalnicoff, V.; Inguscio, M.

    2005-05-05

    Accurate Quantum-Electrodynamics (QED) tests of the simplest bound three body atomic system are performed by precise laser spectroscopic measurements in atomic Helium. In this paper, we present a review of measurements between triplet states at 1083 nm (23S-23P) and at 389 nm (23S-33P). In 4He, such data have been used to measure the fine structure of the triplet P levels and, then, to determine the fine structure constant when compared with equally accurate theoretical calculations. Moreover, the absolute frequencies of the optical transitions have been used for Lamb-shift determinations of the levels involved with unprecedented accuracy. Finally, determination of the He isotopes nuclear structure and, in particular, a measurement of the nuclear charge radius, are performed by using hyperfine structure and isotope-shift measurements.

  4. The human milk oligosaccharide disialyllacto-N-tetraose prevents necrotising enterocolitis in neonatal rats

    PubMed Central

    Jantscher-Krenn, Evelyn; Zherebtsov, Monica; Nissan, Caroline; Goth, Kerstin; Guner, Yigit S; Naidu, Natasha; Choudhury, Biswa; Grishin, Anatoly V; Ford, Henri R; Bode, Lars

    2014-01-01

    Background Necrotising enterocolitis (NEC) is one of the most common and fatal intestinal disorders in preterm infants. Breast-fed infants are at lower risk for NEC than formula-fed infants, but the protective components in human milk have not been identified. In contrast to formula, human milk contains high amounts of complex glycans. Objective To test the hypothesis that human milk oligosaccharides (HMO) contribute to the protection from NEC. Methods Since human intervention studies are unfeasible due to limited availability of HMO, a neonatal rat NEC model was used. Pups were orally gavaged with formula without and with HMO and exposed to hypoxia episodes. Ileum sections were scored blindly for signs of NEC. Two-dimensional chromatography was used to determine the most effective HMO, and sequential exoglycosidase digestions and linkage analysis was used to determine its structure. Results Compared to formula alone, pooled HMO significantly improved 96-hour survival from 73.1% to 95.0% and reduced pathology scores from 1.98±1.11 to 0.44±0.30 (p<0.001). Within the pooled HMO, a specific isomer of disialyllacto-N-tetraose (DSLNT) was identified to be protective. Galacto-oligosaccharides, currently added to formula to mimic some of the effects of HMO, had no effect. Conclusion HMO reduce NEC in neonatal rats and the effects are highly structure specific. If these results translate to NEC in humans, DSLNT could be used to prevent or treat NEC in formula-fed infants, and its concentration in the mother’s milk could serve as a biomarker to identify breast-fed infants at risk of developing this disorder. PMID:22138535

  5. Predicted Configurations of Oligosaccharide Extensions in the Lipooligosaccharide of Nontypeable Haemophilus influenzae Isolates

    PubMed Central

    McCrea, Kirk W.; Xie, Jingping; Daniel, Deborah; Ulrich-Lewis, Justin Theophilus

    2014-01-01

    Lipooligosaccharide configurations were predicted in nontypeable Haemophilus influenzae isolates based on the presence of seven oligosaccharide extension-initiating genes (or alleles). Predicted configurations with 2 to 3 oligosaccharide extensions were more prevalent among middle ear than throat strains. In addition, strains with these configurations averaged higher levels of serum resistance than strains with other configurations. PMID:24789190

  6. Understanding the fundamental mechanism behind accumulation of oligosaccharides during high solids loading enzymatic hydrolysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    During enzymatic hydrolysis of biomass, polysaccharides are cleaved by glycosyl hydrolases to soluble oligosaccharides and further hydrolyzed by ß-glucosidase, ß-xylosidase and other enzymes to monomeric sugars. However, commercial enzyme mixtures do not hydrolyze all of these oligosaccharides and v...

  7. Helicopter flight investigation to determine the effects of a closed-circuit TV on performance of a precision sling-load handling task

    NASA Technical Reports Server (NTRS)

    Dicarlo, D. J.; Kelley, H. L.; Spivey, D. L.

    1974-01-01

    Helicopter sling-load operations have been limited during hover and low-speed flight by the degree of precision achieved by the pilot/helicopter/sling-load combination. Previous attempts to improve precision have included stabilization of the load and helicopter and the addition of a pilot station directly facing the load. In these tests, use of a closed-circuit TV as a display that would permit sling-load delivery and placement by the forward-facing pilot was evaluated using a CH-54B helicopter. In all, three test cases were documented, which included the following: (1) forward-facing pilot using the TV display, (2) forward-facing pilot using verbal commands from a load-facing observer, and (3) aft-facing pilot using direct visual cues. The results indicate that a comparable level of performance was achieved for each test case; however, an increase in pilot workload was noted when the TV system was used.

  8. International normalised ratio (INR) measured on the CoaguChek S and XS compared with the laboratory for determination of precision and accuracy.

    PubMed

    Christensen, Thomas D; Larsen, Torben B; Jensen, Claus; Maegaard, Marianne; Sørensen, Benny

    2009-03-01

    Oral anticoagulation therapy is monitored by the use of international normalised ratio (INR). Patients performing self-management estimate INR using a coagulometer, but studies have been partly flawed regarding the estimated precision and accuracy. The objective was to estimate the imprecision and accuracy for two different coagulometers (CoaguChek S and XS). Twenty-four patients treated with coumarin were prospectively followed for six weeks. INR's were analyzed weekly in duplicates on both coagulometers, and compared with results from the hospital laboratory. Statistical analysis included Bland-Altman plot, 95% limits of agreement, coefficient of variance (CV), and an analysis of variance using a mixed effect model. Comparing 141 duplicate measurements (a total of 564 measurements) of INR, we found that the CoaguChek S and CoaguChek XS had a precision (CV) of 3.4% and 2.3%, respectively. Regarding analytical accuracy, the INR measurements tended to be lower on the coagulometers, and regarding diagnostic accuracy the CoaguChek S and CoaguChek XS deviated more than 15% from the laboratory measurements in 40% and 43% of the measurements, respectively. In conclusion, the precision of the coagulometers was found to be good, but only the CoaguChek XS had a precision within the predefined limit of 3%. Regarding analytical accuracy, the INR measurements tended to be lower on the coagulometers, compared to the laboratory. A large proportion of measurement of the coagulometers deviated more than 15% from the laboratory measurements. Whether this will have a clinical impact awaits further studies.

  9. Detection of milk oligosaccharides in plasma of infants

    PubMed Central

    Ruhaak, L. Renee; Stroble, Carol; Underwood, Mark A.; Lebrilla, Carlito B.

    2014-01-01

    Human Milk Oligosaccharides (HMO) are one of the major components of human milk. HMO are non-digestible by the human gut, where they are known to play important functions as prebiotics and decoys for binding pathogens. Moreover, it has been proposed that HMO may provide sialic acids to the infant that are important in brain development, however this would require absorption of HMO into the bloodstream. HMO have consistently been found in the urine of humans and other mammals, suggesting systemic absorption. Here we present a procedure for the profiling of milk oligosaccharides (MO) in plasma samples obtained from 13 term infants hospitalized for surgery for congenital heart disease. The method comprises protein denaturation, oligosaccharide reduction and porous graphitized carbon solid phase extraction for purification followed by analysis using nHPLC-PGC-chip-TOF-MS. Approximately 15 free MO were typically observed in the plasma of human infants, including LNT, LDFP, LNFT, 3’SL, 6’SL, 3’SLN and 6’SLN, of which the presence was confirmed using fragmentation studies. A novel third isomer of SLN, not found in human or bovine milk was also consistently detected. Differences in the free MO profiles were observed between infants that were totally formula-fed and infants that received at least some part breast milk. Our results indicate that free MO similar in structure to those found in human milk and urine are present in the blood of infants. The method and results presented here will facilitate further research toward the possible roles of free MO in the development of the infant. PMID:25059723

  10. Detection of milk oligosaccharides in plasma of infants.

    PubMed

    Ruhaak, L Renee; Stroble, Carol; Underwood, Mark A; Lebrilla, Carlito B

    2014-09-01

    Human milk oligosaccharides (HMO) are one of the major components of human milk. HMO are non-digestible by the human gut, where they are known to play important functions as prebiotics and decoys for binding pathogens. Moreover, it has been proposed that HMO may provide sialic acids to the infant that are important in brain development, however this would require absorption of HMO into the bloodstream. HMO have consistently been found in the urine of humans and other mammals, suggesting systemic absorption. Here, we present a procedure for the profiling of milk oligosaccharides (MO) in plasma samples obtained from 13 term infants hospitalized for surgery for congenital heart disease. The method comprises protein denaturation, oligosaccharide reduction, and porous graphitized carbon solid phase extraction for purification followed by analysis using nHPLC-PGC-chip-TOF-MS. Approximately 15 free MO were typically observed in the plasma of human infants, including LNT, LDFP, LNFT, 3'SL, 6'SL, 3'SLN, and 6'SLN, of which the presence was confirmed using fragmentation studies. A novel third isomer of SLN, not found in human or bovine milk was also consistently detected. Differences in the free MO profiles were observed between infants that were totally formula-fed and infants that received at least some part breast milk. Our results indicate that free MO similar in structure to those found in human milk and urine are present in the blood of infants. The method and results presented here will facilitate further research toward the possible roles of free MO in the development of the infant.

  11. Processing of N-linked oligosaccharides in soybean cultured cells.

    PubMed

    Hori, H; Elbein, A D

    1983-02-01

    Evidence, based on both in vivo and in vitro studies with suspension-cultured soybean cells, is presented to demonstrate the processing of the oligosaccharide chain of plant N-linked glycoproteins. Following a 1-h incubation of soybean cells with [2-3H]mannose, the predominant glycopeptide obtained by pronase digestion of the membrane fraction was a Man7- or Man8GlcNAc2-Asn (GlcNAc, N-acetylglucosamine). However, the major oligosaccharide isolated from the lipid-linked oligosaccharides of these cells was a Glc2- or Glc3Man9GlcNAc2. Soybean cells were incubated with [2-3H]mannose and the incorporation of mannose into Pronase-released glycopeptides was followed during a 2-h chase. During the first 10 min of labeling, the radioactivity was mostly in a large-sized glycopeptide that appeared to be a Glc1Man9GlcNAc2-peptide. During the next 60 to 90 min of chase, this radioactivity was shifted to smaller and smaller-sized glycopeptides indicating that removal of sugars (i.e., processing) had occurred. Both glucosidase and mannosidase activity was detected in membrane preparations of soybean cells. Nine different glycopeptides were isolated from Pronase digests of soybean cell membrane fractions. These glycopeptides were purified by repeated gel filtration on columns of Bio-Gel P-4. Partial characterization of these glycopeptides by endoglucosaminidase H and alpha-mannosidase digestion, and by analysis of the products, suggested the following glycopeptides: Glc1Man9GlcNAc2-Asn, Man8GlcNAc2-Asn, Man7GlcNAc2-Asn, Man6GlcNAc2-Asn, and Man5GlcNAc2-Asn. PMID:6681697

  12. High-precision absolute (true) density measurements on hygroscopic powders by gas pycnometry: application to determining effects of formulation and process on free volume of lyophilized products.

    PubMed

    Kikuchi, Takayuki; Wang, Bingquan Stuart; Pikal, Michael J

    2011-07-01

    As density (free volume) of the amorphous solids should be related to mobility and stability, an attempt was made to develop a simple, sensitive, and reproducible method to evaluate free volume via high-precision gas pycnometry density measurements, and to apply this methodology to study the variation of free volume with formulation and thermal history (i.e., annealing). Annealed samples were prepared either by heating the product after freeze drying (postannealing) or drying at higher temperature in secondary drying than normal (in-process annealing). Density was measured using a gas pycnometer. We find that the key to high-precision density measurements is isolation of the instrument from atmospheric moisture; accordingly, all operations were carried out in a dry box. With suitable care, densities of amorphous freeze-dried products can be measured with a precision of better than 0.5% in a series of independent but nominally identical samples. Density decreased with increasing molecular weight of dextran, but density of proteins was independent of molecular weight. Small but significant increases in density upon annealing were observed for several formulations. Thus, we conclude that accurate density measurements may be made by carefully controlling residual moisture. Density may be a useful parameter to predict long-term stability.

  13. Hyaluronidase and Hyaluronan Oligosaccharides Promote Neurological Recovery after Intraventricular Hemorrhage

    PubMed Central

    Vinukonda, Govindaiah; Dohare, Preeti; Arshad, Arslan; Zia, Muhammad T.; Panda, Sanjeet; Korumilli, Ritesh; Kayton, Robert; Hascall, Vincent C.; Lauer, Mark E.

    2016-01-01

    Intraventricular hemorrhage (IVH) in premature infants results in inflammation, arrested oligodendrocyte progenitor cell (OPC) maturation, and reduced myelination of the white matter. Hyaluronan (HA) inhibits OPC maturation and complexes with the heavy chain (HC) of glycoprotein inter-α-inhibitor to form pathological HA (HC–HA complex), which exacerbates inflammation. Therefore, we hypothesized that IVH would result in accumulation of HA, and that either degradation of HA by hyaluronidase treatment or elimination of HCs from pathological HA by HA oligosaccharide administration would restore OPC maturation, myelination, and neurological function in survivors with IVH. To test these hypotheses, we used the preterm rabbit model of glycerol-induced IVH and analyzed autopsy samples from premature infants. We found that total HA levels were comparable in both preterm rabbit pups and human infants with and without IVH, but HA receptors—CD44, TLR2, TLR4—were elevated in the forebrain of both humans and rabbits with IVH. Hyaluronidase treatment of rabbits with IVH reduced CD44 and TLR4 expression, proinflammatory cytokine levels, and microglia infiltration. It also promoted OPC maturation, myelination, and neurological recovery. HC–HA and tumor necrosis factor-stimulated gene-6 were elevated in newborns with IVH; and depletion of HC–HA levels by HA oligosaccharide treatment reduced inflammation and enhanced myelination and neurological recovery in rabbits with IVH. Hence, hyaluronidase or HA oligosaccharide treatment represses inflammation, promotes OPC maturation, and restores myelination and neurological function in rabbits with IVH. These therapeutic strategies might improve the neurological outcome of premature infants with IVH. SIGNIFICANCE STATEMENT Approximately 12,000 premature infants develop IVH every year in the United States, and a large number of survivors with IVH develop cerebral palsy and cognitive deficits. The onset of IVH induces inflammation

  14. Preparation and characterization of 15N-enriched, size-defined heparan sulfate precursor oligosaccharides

    PubMed Central

    Sigulinsky, Crystal; Babu, Ponnusamy; Victor, Xylophone V.; Kuberan, Balagurunathan

    2009-01-01

    We report the preparation of size-defined [15N]N-acetylheparosan oligosaccharides from Escherichia coli-derived 15N-enriched N-acetylheparosan. Optimized growth conditions of E. coli in minimal media containing 15NH4Cl yielded [15N]N-acetylheparosan on a preparative scale. Depolymerization of [15N]N-acetylheparosan by heparitinase I yielded resolvable, even-numbered oligosaccharides ranging from disaccharide to icosaccharide. Anion-exchange chromatography-assisted fractionation afforded size-defined [15N]N-acetylheparosan oligosaccharides identifiable by ESI-TOFMS. These isotopically labeled oligosaccharides will prove to be valuable research tools for the chemoenzymatic synthesis of heparin and heparan sulfate oligosaccharides and for the study of their structural biology. PMID:19945695

  15. Assessment of the bifidogenic effect of substituted xylo-oligosaccharides obtained from corn straw.

    PubMed

    Moniz, Patrícia; Ho, Ai Ling; Duarte, Luís C; Kolida, Sofia; Rastall, Robert A; Pereira, Helena; Carvalheiro, Florbela

    2016-01-20

    This work evaluates the bifidogenic potential of substituted xylo-oligosaccharides (XOS) obtained from a lignocellulosic feedstock (corn straw). Autohydrolysis was used to selectively hydrolyse the xylan-rich hemicellulosic fraction and the soluble oligosaccharides were purified by gel filtration chromatography. Selected oligosaccharides fractions within the target ranges of polymerization degree (4-6 and 9-21, samples S1 and S2, respectively) were characterized and their bifidogenic potential was investigated by in vitro fermentations using human fecal inocula. Bacterial growth was assessed by fluorescent in situ hybridization (FISH). XOS consumption and short-chain fatty acids (SCFA) production were evaluated and compared with commercial oligosaccharides. Under the tested conditions, all the substrates were utilized by the microbiota, and fermentation resulted in increased bifidobacteria populations. Samples S1 and S2 increased bifidobacteria populations and the production profile of SCFA was similar for XOS samples and commercial oligosaccharides although XOS samples displayed the highest concentration of SCFA on longer fermentation times.

  16. Disruption and eradication of P. aeruginosa biofilms using nitric oxide-releasing chitosan oligosaccharides

    PubMed Central

    Reighard, Katelyn P.; Hill, David B.; Dixon, Graham A.; Worley, Brittany; Schoenfisch, Mark H.

    2015-01-01

    Biofilm disruption and eradication were investigated as a function of nitric oxide- (NO) releasing chitosan oligosaccharide dose with results compared to control (ie non-NO-releasing) chitosan oligosaccharides and tobramycin. Quantification of biofilm expansion/contraction and multiple-particle tracking microrheology were used to assess the structural integrity of the biofilm before and after antibacterial treatment. While tobramycin had no effect on the physical properties of the biofilm, NO-releasing chitosan oligosaccharides exhibited dose-dependent behavior with biofilm degradation. Control chitosan oligosaccharides increased biofilm elasticity, indicating that the scaffold may mitigate the biofilm disrupting power of nitric oxide somewhat. The results from this study indicate that nitric oxide-releasing chitosan oligosaccharides act as dual-action therapeutics capable of eradicating and physically disrupting P. aeruginosa biofilms. PMID:26610146

  17. The formation of lipid-linked oligosaccharides in Madin-Darby canine kidney cells. Changes in oligosaccharide profiles induced by glucosamine.

    PubMed

    Pan, Y T; Elbein, A D

    1982-03-25

    Glucosamine inhibits the incorporation of [2-3H]mannose into lipid-linked oligosaccharides and into glycoproteins in influenza virus-infected MDCK cells. Fifty per cent inhibition of these components requires about 2 mM glucosamine. The oligosaccharide portions of the lipid-linked oligosaccharides in cells inhibited with glucosamine were compared to that of normal cells by chromatography on Bio-Gel P-4 columns. In uninhibited cells, the major oligosaccharide formed from [2-3H]mannose was the Glc3Man9GlcNAc2 species as demonstrated by the products of endoglucosaminidase H and alpha-mannosidase digestion. At low concentrations of glucosamine (approximately 2 mM) or in short term incubations (1 to 2 h), the large oligosaccharide disappeared and was replaced by a Man7GlcNAc2 species. This was also characterized by various enzymatic treatments as well as its migration rate on Bio-Gel P-4 as compared to known oligosaccharides. At still higher glucosamine concentrations or longer incubation times, the Man7GlcNAc2 species also disappeared and was replaced by a Man3GlcNAc2 species. The effect of glucosamine was reversible such that when the cells were washed free of this inhibitor, they resumed the synthesis of the Glc3Man9GlcNAc2 species and the other two oligosaccharides disappeared. These smaller oligosaccharides were not observed when glucosamine was replaced by either 5 mM galactosamine or 5 mM N-acetylglucosamine. PMID:7061450

  18. Precision Measurements at the ILC

    SciTech Connect

    Nelson, T.K.; /SLAC

    2006-12-06

    With relatively low backgrounds and a well-determined initial state, the proposed International Linear Collider (ILC) would provide a precision complement to the LHC experiments at the energy frontier. Completely and precisely exploring the discoveries of the LHC with such a machine will be critical in understanding the nature of those discoveries and what, if any, new physics they represent. The unique ability to form a complete picture of the Higgs sector is a prime example of the probative power of the ILC and represents a new era in precision physics.

  19. Precision GPS ephemerides and baselines

    NASA Technical Reports Server (NTRS)

    1991-01-01

    Based on the research, the area of precise ephemerides for GPS satellites, the following observations can be made pertaining to the status and future work needed regarding orbit accuracy. There are several aspects which need to be addressed in discussing determination of precise orbits, such as force models, kinematic models, measurement models, data reduction/estimation methods, etc. Although each one of these aspects was studied at CSR in research efforts, only points pertaining to the force modeling aspect are addressed.

  20. The effect of castanospermine on the oligosaccharide structures of glycoproteins from lymphoma cell lines.

    PubMed Central

    Palamarczyk, G; Elbein, A D

    1985-01-01

    The effect of castanospermine on the processing of N-linked oligosaccharides was examined in the parent mouse lymphoma cell line and in a mutant cell line that lacks glucosidase II. When the parent cell line was grown in the presence of castanospermine at 100 micrograms/ml, glucose-containing high-mannose oligosaccharides were obtained that were not found in the absence of inhibitor. These oligosaccharides bound tightly to concanavalin A-Sepharose and were eluted in the same position as oligosaccharides from the mutant cells grown in the absence or presence of the alkaloid. The castanospermine-induced oligosaccharides were characterized by gel filtration on Bio-Gel P-4, by h.p.l.c. analysis, by enzymic digestions and by methylation analysis of [3H]mannose-labelled and [3H]galactose-labelled oligosaccharides. The major oligosaccharide released by endoglucosaminidase H in either parent or mutant cells grown in castanospermine was a Glc3Man7GlcNAc, with smaller amounts of Glc3Man8GlcNAc and Glc3Man9GlcNAc. On the other hand, in the absence of castanospermine the mutant produces mostly Glc2Man7GlcNAc. In addition to the above oligosaccharides, castanospermine stimulated the formation of an endoglucosaminidase H-resistant oligosaccharide in both cell lines. This oligosaccharide was characterized as a Glc2Man5GlcNAc2 (i.e., Glc(1,2)Glc(1,3)Man(1,2)Man(1,2)Man(1,3)[Man(1,6)]Man-GlcNAc-GlcNAc). Castanospermine was tested directly on glucosidase I and glucosidase II in lymphoma cell extracts by using [Glc-3H]Glc3Man9GlcNAc and [Glc-3H]Glc2Man9GlcNAc as substrates. Castanospermine was a potent inhibitor of both activities, but glucosidase I appeared to be more sensitive to inhibition. PMID:3924028

  1. The effect of castanospermine on the oligosaccharide structures of glycoproteins from lymphoma cell lines.

    PubMed

    Palamarczyk, G; Elbein, A D

    1985-05-01

    The effect of castanospermine on the processing of N-linked oligosaccharides was examined in the parent mouse lymphoma cell line and in a mutant cell line that lacks glucosidase II. When the parent cell line was grown in the presence of castanospermine at 100 micrograms/ml, glucose-containing high-mannose oligosaccharides were obtained that were not found in the absence of inhibitor. These oligosaccharides bound tightly to concanavalin A-Sepharose and were eluted in the same position as oligosaccharides from the mutant cells grown in the absence or presence of the alkaloid. The castanospermine-induced oligosaccharides were characterized by gel filtration on Bio-Gel P-4, by h.p.l.c. analysis, by enzymic digestions and by methylation analysis of [3H]mannose-labelled and [3H]galactose-labelled oligosaccharides. The major oligosaccharide released by endoglucosaminidase H in either parent or mutant cells grown in castanospermine was a Glc3Man7GlcNAc, with smaller amounts of Glc3Man8GlcNAc and Glc3Man9GlcNAc. On the other hand, in the absence of castanospermine the mutant produces mostly Glc2Man7GlcNAc. In addition to the above oligosaccharides, castanospermine stimulated the formation of an endoglucosaminidase H-resistant oligosaccharide in both cell lines. This oligosaccharide was characterized as a Glc2Man5GlcNAc2 (i.e., Glc(1,2)Glc(1,3)Man(1,2)Man(1,2)Man(1,3)[Man(1,6)]Man-GlcNAc-GlcNAc). Castanospermine was tested directly on glucosidase I and glucosidase II in lymphoma cell extracts by using [Glc-3H]Glc3Man9GlcNAc and [Glc-3H]Glc2Man9GlcNAc as substrates. Castanospermine was a potent inhibitor of both activities, but glucosidase I appeared to be more sensitive to inhibition. PMID:3924028

  2. Asparagine-linked oligosaccharides on lutropin, follitropin, and thyrotropin: structural elucidation of the sulfated and sialylated oligosaccharides on bovine, ovine, and human pituitary glycoprotein hormones

    SciTech Connect

    Green, E.D.; Baenziger, J.U.

    1988-01-05

    The authors have elucidated the structures of the anionic asparagine-linked oligosaccharides present on the glycoprotein hormones lutropin (luteinizing hormone), follitropin (follicle-stimulating hormone), and thyrotropin (thyroid-stimulating hormone). Purified hormones, isolated from bovine, ovine, and human pituitaries, were digested with N-glycanase, and the released oligosaccharides were reduced with NaB(/sup 3/H)/sub 4/. The /sup 3/H-labeled oligosaccharides from each hormone were then fractionated by anion-exchange high performance liquid chromatography (HPLC) into populations differing in the number of sulfate and/or sialic acid moieties. The sulfated, sialylated, and sulfated/sialylated structures, which together comprised 67-90% of the asparagine-linked oligosaccharides on the pituitary glycoprotein hormones, were highly heterogeneous and displayed hormone- as well as animal species-specific features. A previously uncharacterized dibranched oligosaccharide, bearing one residue each of sulfate and sialic acid, was found on all of the hormones except bovine lutropin. In this study, they describe the purification and detailed structural characterizations of the sulfated, sialylated, and sulfated/sialylated oligosaccharides found on lutropin, follitropin, and thyrotropin from several animal species.

  3. Assignment of the stereochemistry and anomeric configuration of sugars within oligosaccharides via overlapping disaccharide ladders using MS(n).

    PubMed

    Konda, Chiharu; Londry, Frank A; Bendiak, Brad; Xia, Yu

    2014-08-01

    A systematic approach is described that can pinpoint the stereo-structures (sugar identity, anomeric configuration, and location) of individual sugar units within linear oligosaccharides. Using a highly modified mass spectrometer, dissociation of linear oligosaccharides in the gas phase was optimized along multiple-stage tandem dissociation pathways (MS(n), n = 4 or 5). The instrument was a hybrid triple quadrupole/linear ion trap mass spectrometer capable of high-efficiency bidirectional ion transfer between quadrupole arrays. Different types of collision-induced dissociation (CID), either on-resonance ion trap or beam-type CID could be utilized at any given stage of dissociation, enabling either glycosidic bond cleavages or cross-ring cleavages to be maximized when wanted. The approach first involves optimizing the isolation of disaccharide units as an ordered set of overlapping substructures via glycosidic bond cleavages during early stages of MS(n), with explicit intent to minimize cross-ring cleavages. Subsequently, cross-ring cleavages were optimized for individual disaccharides to yield key diagnostic product ions (m/z 221). Finally, fingerprint patterns that establish stereochemistry and anomeric configuration were obtained from the diagnostic ions via CID. Model linear oligosaccharides were derivatized at the reducing end, allowing overlapping ladders of disaccharides to be isolated from MS(n). High confidence stereo-structural determination was achieved by matching MS(n) CID of the diagnostic ions to synthetic standards via a spectral matching algorithm. Using this MS(n) (n = 4 or 5) approach, the stereo-structures, anomeric configurations, and locations of three individual sugar units within two pentasaccharides were successfully determined.

  4. Assignment of the Stereochemistry and Anomeric Configuration of Sugars within Oligosaccharides Via Overlapping Disaccharide Ladders Using MSn

    NASA Astrophysics Data System (ADS)

    Konda, Chiharu; Londry, Frank A.; Bendiak, Brad; Xia, Yu

    2014-08-01

    A systematic approach is described that can pinpoint the stereo-structures (sugar identity, anomeric configuration, and location) of individual sugar units within linear oligosaccharides. Using a highly modified mass spectrometer, dissociation of linear oligosaccharides in the gas phase was optimized along multiple-stage tandem dissociation pathways (MSn, n = 4 or 5). The instrument was a hybrid triple quadrupole/linear ion trap mass spectrometer capable of high-efficiency bidirectional ion transfer between quadrupole arrays. Different types of collision-induced dissociation (CID), either on-resonance ion trap or beam-type CID could be utilized at any given stage of dissociation, enabling either glycosidic bond cleavages or cross-ring cleavages to be maximized when wanted. The approach first involves optimizing the isolation of disaccharide units as an ordered set of overlapping substructures via glycosidic bond cleavages during early stages of MSn, with explicit intent to minimize cross-ring cleavages. Subsequently, cross-ring cleavages were optimized for individual disaccharides to yield key diagnostic product ions ( m/ z 221). Finally, fingerprint patterns that establish stereochemistry and anomeric configuration were obtained from the diagnostic ions via CID. Model linear oligosaccharides were derivatized at the reducing end, allowing overlapping ladders of disaccharides to be isolated from MSn. High confidence stereo-structural determination was achieved by matching MSn CID of the diagnostic ions to synthetic standards via a spectral matching algorithm. Using this MSn ( n = 4 or 5) approach, the stereo-structures, anomeric configurations, and locations of three individual sugar units within two pentasaccharides were successfully determined.

  5. Precision measurements in supersymmetry

    SciTech Connect

    Feng, J.L.

    1995-05-01

    Supersymmetry is a promising framework in which to explore extensions of the standard model. If candidates for supersymmetric particles are found, precision measurements of their properties will then be of paramount importance. The prospects for such measurements and their implications are the subject of this thesis. If charginos are produced at the LEP II collider, they are likely to be one of the few available supersymmetric signals for many years. The author considers the possibility of determining fundamental supersymmetry parameters in such a scenario. The study is complicated by the dependence of observables on a large number of these parameters. He proposes a straightforward procedure for disentangling these dependences and demonstrate its effectiveness by presenting a number of case studies at representative points in parameter space. In addition to determining the properties of supersymmetric particles, precision measurements may also be used to establish that newly-discovered particles are, in fact, supersymmetric. Supersymmetry predicts quantitative relations among the couplings and masses of superparticles. The author discusses tests of such relations at a future e{sup +}e{sup {minus}} linear collider, using measurements that exploit the availability of polarizable beams. Stringent tests of supersymmetry from chargino production are demonstrated in two representative cases, and fermion and neutralino processes are also discussed.

  6. A precise radiographic method to determine the location of the inferior alveolar canal in the posterior edentulous mandible: implications for dental implants. Part 1: Technique.

    PubMed

    Stella, J P; Tharanon, W

    1990-01-01

    In severely atrophic or osteoporotic mandibles, the location of the inferior alveolar nerve may vary considerably, both superoinferiorly and mediolaterally. A clinician's ability to reliably locate this nerve within the mandible would permit the surgical planning of implant placement in the posterior edentulous mandible. Eight edentulous cadaver mandibles were studied. A technique that precisely locates the inferior alveolar nerve within the mandible is described. The technique will aid the surgeon in planning a surgical approach to the posterior mandible with reduced risk of injury to the inferior alveolar nerve. PMID:2391135

  7. Subcellular localization of glycosidases and glycosyltransferases involved in the processing of N-linked oligosaccharides

    SciTech Connect

    Sturm, A.; Johnson, K.D.; Szumilo, T.; Elbein, A.D.; Chrispeels, M.J.

    1987-11-01

    Using isopycnic sucrose gradients, we have ascertained the subcellular location of several enzymes involved in the processing of the N-linked oligosaccharides of glycoproteins in developing cotyledons of the common bean, Phaseolus vulgaris. All are localized in the endoplasmic reticulum (ER) or Golgi complex as determined by co-sedimentation with the ER marker, NADH-cytochrome c reductase, or the Golgi marker, glucan synthase I. Glucosidase activity, which removes glucose residues from Glc/sub 3/Man/sub 9/(GlcNAc)/sub 2/, was found exclusively in the ER. All other processing enzymes, which act subsequent to the glucose trimming steps, are associates with Golgi. These include mannosidase I (removes 1-2 mannose residues from Man/sub 6-9/(GlcNAc)/sub 2/), mannosidase II (removes mannose residues from GlcNAcMan/sub 5/(GlcNAc)/sub 2/), and fucosyltransferase (transfers a fucose residue to the Asn-linked GlcNAc of appropriate glycans). The authors have previously reported the localization of two other glycan modifying enzymes (GlcNAc-transferase and xylosyltranferase activities) in the Golgi complex. Attempts at subfractionation of the Golgi fraction on shallow sucrose gradients yielded similar patterns of distribution for all the Golgi processing enzymes. Subfractionation on Percoll gradients resulted in two peaks of the Golgi marker enzyme inosine diphosphatase, whereas the glycan processing enzymes were all enriched in the peak of lower density. These results do not lend support to the hypothesis that N-linked oligosaccharide processing enzymes are associated with Golgi cisternae of different densities.

  8. Galacto-oligosaccharides and Colorectal Cancer: Feeding our Intestinal Probiome

    PubMed Central

    Bruno-Barcena, Jose M.; Azcarate-Peril, M. Andrea

    2014-01-01

    Prebiotics are ingredients selectively fermented by the intestinal microbiota that promote changes in the microbial community structure and/or their metabolism, conferring health benefits to the host. Studies show that β (1–4) galacto-oligosaccharides [β (1–4) GOS], lactulose and fructo-oligosaccharides increase intestinal concentration of lactate and short chain fatty acids, and stool frequency and weight, and they decrease fecal concentration of secondary bile acids, fecal pH, and nitroreductase and β-glucuronidase activities suggesting a clear role in colorectal cancer (CRC) prevention. This review summarizes research on prebiotics bioassimilation, specifically β (1–4) GOS, and their potential role in CRC. We also evaluate research that show that the impact of prebiotics on host physiology can be direct or through modulation of the gut intestinal microbiome, specifically the probiome (autochtonous beneficial bacteria), we present studies on a potential role in CRC progression to finally describe the current state of β (1–4) GOS generation for industrial production. PMID:25584074

  9. Significance of galactinol and raffinose family oligosaccharide synthesis in plants

    PubMed Central

    Sengupta, Sonali; Mukherjee, Sritama; Basak, Papri; Majumder, Arun L.

    2015-01-01

    Abiotic stress induces differential expression of genes responsible for the synthesis of raffinose family of oligosaccharides (RFOs) in plants. RFOs are described as the most widespread D-galactose containing oligosaccharides in higher plants. Biosynthesis of RFOs begin with the activity of galactinol synthase (GolS; EC 2.4.1.123), a GT8 family glycosyltransferase that galactosylates myo-inositol to produce galactinol. Raffinose and the subsequent higher molecular weight RFOs (Stachyose, Verbascose, and Ajugose) are synthesized from sucrose by the subsequent addition of activated galactose moieties donated by Galactinol. Interestingly, GolS, the key enzyme of this pathway is functional only in the flowering plants. It is thus assumed that RFO synthesis is a specialized metabolic event in higher plants; although it is not known whether lower plant groups synthesize any galactinol or RFOs. In higher plants, several functional importance of RFOs have been reported, e.g., RFOs protect the embryo from maturation associated desiccation, are predominant transport carbohydrates in some plant families, act as signaling molecule following pathogen attack and wounding and accumulate in vegetative tissues in response to a range of abiotic stresses. However, the loss-of-function mutants reported so far fail to show any perturbation in those biological functions. The role of RFOs in biotic and abiotic stress is therefore still in debate and their specificity and related components remains to be demonstrated. The present review discusses the biology and stress-linked regulation of this less studied extension of inositol metabolic pathway. PMID:26379684

  10. Xylo-Oligosaccharide Process Development, Composition, and Techno-Economic Analysis. Cooperative Research and Development Final Report, CRADA Number CRD-12-483

    SciTech Connect

    Shekiro, Joe; Elander, Richard

    2015-12-01

    The purpose of this cooperative work agreement between General Mills Inc. (GMI) and NREL is to determine the feasibility of producing a valuable food ingredient (xylo-oligosaccharides or XOS), a highly soluble fiber material, from agricultural waste streams, at an advantaged cost level relative to similar existing ingredients. The scope of the project includes pilot-scale process development (Task 1), compositional analysis (Task 2), and techno-economic analysis (Task 3).

  11. Prebiotic oligosaccharides reduce proinflammatory cytokines in intestinal Caco-2 cells via activation of PPARγ and peptidoglycan recognition protein 3.

    PubMed

    Zenhom, Marwa; Hyder, Ayman; de Vrese, Michael; Heller, Knut J; Roeder, Thomas; Schrezenmeir, Jürgen

    2011-05-01

    Prebiotic oligosaccharides modulate the intestinal microbiota and beneficially affect the human body by reducing intestinal inflammation. This immunomodulatory effect was assumed to be bacterial in origin. However, some observations suggest that oligosaccharides may exert an antiinflammatory effect per se. We hypothesized that oligosaccharides affect the intestinal immunity via activation of peptidoglycan recognition protein 3 (PGlyRP3), which reduces the expression of proinflammatory cytokines. Caco-2 cells were treated with the oligosaccharides, α3-sialyllactose, or fructooligosaccharides (Raftilose p95), and the effects of these treatments on PGlyRP3 and PPARγ expression, the release and expression of some proinflammatory cytokines, and NF-κB translocation were tested. Both oligosaccharides had antiinflammatory activity; they significantly reduced IL-12 secretion in Caco-2 cells and gene expression of IL-12p35, IL-8, and TNFα. They also reduced the gene expression and nuclear translocation of NF-κB. Both oligosaccharides dose and time dependently induced the production of PGlyRP3, the silencing of which by transfection of Caco-2 cells with specific small interfering RNA targeting PGlyRP3 abolished the antiinflammatory role of both oligosaccharides. Incubation of Caco-2 cells with both oligosaccharides induced PPARγ. Antagonizing PPARγ by culturing the cells with GW9662 for 24 h inhibited the oligosaccharide-induced PGlyRP3 production and the antiinflammatory effect of the oligosaccharides. We conclude that oligosaccharides may exert an antiinflammatory effect by inducing the nuclear receptor PPARγ, which regulates the antiinflammatory PGlyRP3.

  12. Mass preparation of oligosaccharides by the hydrolysis of chondroitin sulfate polysaccharides with a subcritical water microreaction system.

    PubMed

    Yamada, Shuhei; Matsushima, Keiichiro; Ura, Haruo; Miyamoto, Nobuyuki; Sugahara, Kazuyuki

    2013-04-19

    The biological functions of chondroitin sulfate (CS) are executed by the interaction of specific oligosaccharide sequences in the polysaccharide chain with effective proteins. Thus, CS oligosaccharides are expected to have pharmacological applications. Furthermore, the demand for CS in health food supplements and medication is growing. However, the absorbency of CS polysaccharides in the digestive system is very low. Since the activity of orally administered CS is expected to increase by depolymerization, industrial production of CS oligosaccharides is required. In this study, hydrolysis with subcritical and super-critical water was applied to the depolymerization of CS for the first time, and hydrolytic conditions for oligosaccharide production were examined. CS oligosaccharides principally containing an N-acetyl-D-galactosamine residue at their reducing ends were successfully obtained. No significant desulfation was found in CS oligosaccharides prepared under optimized conditions. The production of CS oligosaccharides by this method will have a strong influence on the CS-related materials market.

  13. Mass preparation of oligosaccharides by the hydrolysis of chondroitin sulfate polysaccharides with a subcritical water microreaction system.

    PubMed

    Yamada, Shuhei; Matsushima, Keiichiro; Ura, Haruo; Miyamoto, Nobuyuki; Sugahara, Kazuyuki

    2013-04-19

    The biological functions of chondroitin sulfate (CS) are executed by the interaction of specific oligosaccharide sequences in the polysaccharide chain with effective proteins. Thus, CS oligosaccharides are expected to have pharmacological applications. Furthermore, the demand for CS in health food supplements and medication is growing. However, the absorbency of CS polysaccharides in the digestive system is very low. Since the activity of orally administered CS is expected to increase by depolymerization, industrial production of CS oligosaccharides is required. In this study, hydrolysis with subcritical and super-critical water was applied to the depolymerization of CS for the first time, and hydrolytic conditions for oligosaccharide production were examined. CS oligosaccharides principally containing an N-acetyl-D-galactosamine residue at their reducing ends were successfully obtained. No significant desulfation was found in CS oligosaccharides prepared under optimized conditions. The production of CS oligosaccharides by this method will have a strong influence on the CS-related materials market. PMID:23454651

  14. Preparation and characterisation of the oligosaccharides derived from Chinese water chestnut polysaccharides.

    PubMed

    Wu, Sheng-Jun; Yu, Lin

    2015-08-15

    Hydrogen peroxide (H2O2) is a strong oxidant that cleaves glycosidic bonds in polysaccharides. In this study, the oligosaccharides were prepared by removing the starch from Chinese water chestnuts through hydrolysis using α-amylase and then hydrolysing the remaining polysaccharides with H2O2, during which the oligosaccharide yield was monitored. The yield of oligosaccharide was affected by reaction time, temperature, and H2O2 concentration. Extended reaction times, high temperatures, and high H2O2 concentrations decreased oligosaccharide yield. Under optimum conditions (i.e., reaction time of 4h, reaction temperature of 80°C, and 2.5% H2O2 concentration), the maximum oligosaccharide yield was 3.91%. The oligosaccharides derived from Chinese water chestnuts polysaccharides exhibited strong hydroxyl and 2,2-diphenyl-β-picrylhydrazyl radical scavenging activity when applied at a concentration of 100 μg/mL. The results indicate that the oligosaccharides derived from Chinese water chestnuts polysaccharides possessed good antioxidant properties and can be developed as a new dietary supplement and functional food.

  15. Application of ultrasound for enhanced extraction of prebiotic oligosaccharides from selected fruits and vegetables.

    PubMed

    Jovanovic-Malinovska, Ruzica; Kuzmanova, Slobodanka; Winkelhausen, Eleonora

    2015-01-01

    Ultrasound assisted extraction (UAE) was used to extract oligosaccharides from selected fruits (blueberry, nectarine, raspberry, watermelon) and vegetables (garlic, Jerusalem artichoke, leek, scallion, spring garlic and white onion). The individual fractions of the oligosaccharides were analyzed: 1-kestose (GF2), nystose (GF3) and 1F-β-fructofuranosylnystose (GF4) from the fructo-oligosaccharides (FOS), and raffinose and stachyose from the raffinose family oligosaccharides (RFO). Extraction parameters including solvent concentration (35-85% v/v), extraction temperature (25-50°C) and sonication time (5-15min) were examined using response surface methodology (RSM). Ethanol concentration of 63% v/v, temperature of 40°C and extraction time of 10min gave maximal concentration of the extracted oligosaccharides. The experimental values under optimal conditions were consistent with the predicted values. UAE increased the concentration of extracted oligosaccharides in all fruits and vegetables from 2 to 4-fold compared to conventional extraction. The highest increase of total oligosaccharides extracted by UAE was detected in Jerusalem artichoke, 7.17±0.348g/100gFW, compared to 1.62±0.094g/100gFW with conventional method.

  16. MALDI Q-TOF CID MS for Diagnostic Ion Screening of Human Milk Oligosaccharide Samples

    PubMed Central

    Jovanović, Marko; Tyldesley-Worster, Richard; Pohlentz, Gottfried; Peter-Katalinić, Jasna

    2014-01-01

    Human milk oligosaccharides (HMO) represent the bioactive components of human milk, influencing the infant’s gastrointestinal microflora and immune system. Structurally, they represent a highly complex class of analyte, where the main core oligosaccharide structures are built from galactose and N-acetylglucosamine, linked by 1–3 or 1–4 glycosidic linkages and potentially modified with fucose and sialic acid residues. The core structures can be linear or branched. Additional structural complexity in samples can be induced by endogenous exoglycosidase activity or chemical procedures during the sample preparation. Here, we show that using matrix-assisted laser desorption/ionization (MALDI) quadrupole-time-of-flight (Q-TOF) collision-induced dissociation (CID) as a fast screening method, diagnostic structural information about single oligosaccharide components present in a complex mixture can be obtained. According to sequencing data on 14 out of 22 parent ions detected in a single high molecular weight oligosaccharide chromatographic fraction, 20 different oligosaccharide structure types, corresponding to over 30 isomeric oligosaccharide structures and over 100 possible HMO isomers when biosynthetic linkage variations were taken into account, were postulated. For MS/MS data analysis, we used the de novo sequencing approach using diagnostic ion analysis on reduced oligosaccharides by following known biosynthetic rules. Using this approach, de novo characterization has been achieved also for the structures, which could not have been predicted. PMID:24743894

  17. Automated sample preparation facilitated by PhyNexus MEA purification system for oligosaccharide mapping of glycoproteins.

    PubMed

    Prater, Bradley D; Anumula, Kalyan R; Hutchins, Jeff T

    2007-10-15

    A reproducible high-throughput sample cleanup method for fluorescent oligosaccharide mapping of glycoproteins is described. Oligosaccharides are released from glycoproteins using PNGase F and labeled with 2-aminobenzoic acid (anthranilic acid, AA). A PhyNexus MEA system was adapted for automated isolation of the fluorescently labeled oligosaccharides from the reaction mixture prior to mapping by HPLC. The oligosaccharide purification uses a normal-phase polyamide resin (DPA-6S) in custom-made pipette tips. The resin volume, wash, and elution steps involved were optimized to obtain high recovery of oligosaccharides with the least amount of contaminating free fluorescent dye in the shortest amount of time. The automated protocol for sample cleanup eliminated all manual manipulations with a recycle time of 23 min. We have reduced the amount of excess AA by 150-fold, allowing quantitative oligosaccharide mapping from as little as 500 ng digested recombinant immunoglobulin G (rIgG). This low sample requirement allows early selection of a cell line with desired characteristics (e.g., oligosaccharide profile and high specific productivity) for the production of glycoprotein drugs. In addition, the use of Tecan or another robotic platform in conjunction with this method should allow the cleanup of 96 samples in 23 min, a significant decrease in the amount of time currently required to process such a large number of samples.

  18. Mass spectrometric analysis of O-linked oligosaccharides from various recombinant expression systems.

    PubMed

    Kenny, Diarmuid T; Gaunitz, Stefan; Hayes, Catherine A; Gustafsson, Anki; Sjöblom, Magnus; Holgersson, Jan; Karlsson, Niclas G

    2013-01-01

    Analysis of O-linked glycosylation is one of the main challenges during structural validation of recombinant glycoproteins. With methods available for N-linked glycosylation in regard to oligosaccharide analysis as well as glycopeptide mapping, there are still challenges for O-linked glycan analysis. Here, we present mass spectrometric methodology for O-linked oligosaccharides released by reductive β-elimination. Using LC-MS and LC-MS(2) with graphitized carbon columns, oligosaccharides are analyzed without derivatization. This approach provides a high-throughput method for screening during clonal selection, as well as product structure verification, without impairing sequencing ability. The protocols are exemplified by analysis of glycoproteins from mammalian cell cultures (CHO cells) as well as insect cells and yeast. The data shows that the method can be successfully applied to both neutral and acidic O-linked oligosaccharides, where sialic acid, hexuronic acid, and sulfate are common substituents. Further characterization of O-glycans can be achieved using permethylation. Permethylation of O-linked oligosaccharides followed by direct infusion into the mass spectrometer provide information about oligosaccharide composition, and subsequent MS (n) experiments can be carried out to elucidate oligosaccharide structure including linkage information and sequence.

  19. Insulin-induced phospho-oligosaccharide stimulates amino acid transport in isolated rat hepatocytes.

    PubMed Central

    Varela, I; Avila, M; Mato, J M; Hue, L

    1990-01-01

    The ability of the insulin-induced phospho-oligosaccharide to stimulate amino acid transport was studied in isolated rat hepatocytes. At low alpha-aminoisobutyric acid concentrations (0.1 mM), both 100 nM-insulin and 10 microM-phospho-oligosaccharide doubled amino acid uptake after 2 h of incubation. This stimulation was prevented by 0.1 mM-cycloheximide or 5 micrograms of actinomycin D/ml, indicating that the phospho-oligosaccharide, like insulin, was acting via the synthesis of a high-affinity transport component. The effects of the phospho-oligosaccharide and of insulin were blocked by Ins2P (2.5 mM), but not by myo-inositol, inositol hexaphosphoric acid or several monosaccharides such as mannose, glucosamine and galactose. Both the temporal effect on amino acid entry and the extent of stimulation of this process by the phospho-oligosaccharide indicate that this molecule mimics, and may mediate, some of the long-term actions of insulin. However, the effects of phospho-oligosaccharide and insulin were not exactly the same, since the effect of insulin, but not of the phospho-oligosaccharide, was additive with that of glucagon. PMID:2185744

  20. Bovine milk as a source of functional oligosaccharides for improving human health.

    PubMed

    Zivkovic, Angela M; Barile, Daniela

    2011-05-01

    Human milk oligosaccharides are complex sugars that function as selective growth substrates for specific beneficial bacteria in the gastrointestinal system. Bovine milk is a potentially excellent source of commercially viable analogs of these unique molecules. However, bovine milk has a much lower concentration of these oligosaccharides than human milk, and the majority of the molecules are simpler in structure than those found in human milk. Specific structural characteristics of milk-derived oligosaccharides are crucial to their ability to selectively enrich beneficial bacteria while inhibiting or being less than ideal substrates for undesirable and pathogenic bacteria. Thus, if bovine milk products are to provide human milk-like benefits, it is important to identify specific dairy streams that can be processed commercially and cost-effectively and that can yield specific oligosaccharide compositions that will be beneficial as new food ingredients or supplements to improve human health. Whey streams have the potential to be commercially viable sources of complex oligosaccharides that have the structural resemblance and diversity of the bioactive oligosaccharides in human milk. With further refinements to dairy stream processing techniques and functional testing to identify streams that are particularly suitable for enriching beneficial intestinal bacteria, the future of oligosaccharides isolated from dairy streams as a food category with substantiated health claims is promising.

  1. Calcium-Activated SK Channels Influence Voltage-Gated Ion Channels to Determine the Precision of Firing in Globus Pallidus Neurons

    PubMed Central

    Deister, Christopher A.; Chan, C. Savio; Surmeier, D. James; Wilson, Charles J.

    2012-01-01

    Globus pallidus (GP) neurons fire rhythmically in the absence of synaptic input, suggesting that they may encode their inputs as changes in the phase of their rhythmic firing. Action potential afterhyperpolarization (AHP) enhances precision of firing by ensuring that the ion channels recover from inactivation by the same amount on each cycle. Voltage-clamp experiments in slices showed that the longest component of the GP neuron’s AHP is blocked by apamin, a selective antagonist of calcium-activated SK channels. Application of 100 nm apamin also disrupted the precision of firing in perforated-patch and cell-attached recordings. SK channel blockade caused a small depolarization in spike threshold and made it more variable, but there was no reduction in the maximal rate of rise during an action potential. Thus, the firing irregularity was not caused solely by a reduction in voltage-gated Na+ channel availability. Subthreshold voltage ramps triggered a large outward current that was sensitive to the initial holding potential and had properties similar to the A-type K+ current in GP neurons. In numerical simulations, the availability of both Na+ and A-type K+ channels during autonomous firing were reduced when SK channels were removed, and a nearly equal reduction in Na+ and K+ subthreshold-activated ion channel availability produced a large decrease in the neuron’s slope conductance near threshold. This change made the neuron more sensitive to intrinsically generated noise. In vivo, this change would also enhance the sensitivity of GP neurons to small synaptic inputs. PMID:19571136

  2. Precise determination of the deuteron spin structure at low to moderate Q2 with CLAS and extraction of the neutron contribution

    NASA Astrophysics Data System (ADS)

    Guler, N.; Fersch, R. G.; Kuhn, S. E.; Bosted, P.; Griffioen, K. A.; Keith, C.; Minehart, R.; Prok, Y.; Adhikari, K. P.; Adikaram, D.; Amaryan, M. J.; Anderson, M. D.; Anefalos Pereira, S.; Avakian, H.; Ball, J.; Battaglieri, M.; Batourine, V.; Bedlinskiy, I.; Biselli, A.; Briscoe, W. J.; Brooks, W. K.; Bültmann, S.; Burkert, V. D.; Carman, D. S.; Celentano, A.; Chandavar, S.; Charles, G.; Colaneri, L.; Cole, P. L.; Contalbrigo, M.; Crabb, D.; Crede, V.; D'Angelo, A.; Dashyan, N.; Deur, A.; Djalali, C.; Dodge, G. E.; Dupre, R.; Alaoui, A. El; El Fassi, L.; Elouadrhiri, L.; Eugenio, P.; Fedotov, G.; Fegan, S.; Filippi, A.; Fleming, J. A.; Forest, T. A.; Garillon, B.; Garçon, M.; Gevorgyan, N.; Gilfoyle, G. P.; Giovanetti, K. L.; Girod, F. X.; Goetz, J. T.; Golovatch, E.; Gothe, R. W.; Guidal, M.; Guo, L.; Hafidi, K.; Hakobyan, H.; Harrison, N.; Hattawy, M.; Hicks, K.; Ho, D.; Holtrop, M.; Hughes, S. M.; Hyde, C. E.; Ireland, D. G.; Ishkhanov, B. S.; Isupov, E. L.; Jo, H. S.; Joo, K.; Joosten, S.; Keller, D.; Khandaker, M.; Kim, A.; Kim, W.; Klein, A.; Klein, F. J.; Kubarovsky, V.; Kuleshov, S. V.; Livingston, K.; Lu, H. Y.; Mayer, M.; MacGregor, I. J. D.; McKinnon, B.; Mirazita, M.; Mokeev, V.; Montgomery, R. A.; Movsisyan, A.; Munoz Camacho, C.; Nadel-Turonski, P.; Net, L. A.; Niculescu, I.; Osipenko, M.; Ostrovidov, A. I.; Park, K.; Pasyuk, E.; Pisano, S.; Pogorelko, O.; Price, J. W.; Procureur, S.; Ripani, M.; Rizzo, A.; Rosner, G.; Rossi, P.; Roy, P.; Sabatié, F.; Salgado, C.; Schott, D.; Schumacher, R. A.; Seder, E.; Simonyan, A.; Skorodumina, Iu.; Sokhan, D.; Sparveris, N.; Strakovsky, I. I.; Strauch, S.; Sytnik, V.; Tian, Ye; Tkachenko, S.; Ungaro, M.; Voutier, E.; Walford, N. K.; Wei, X.; Weinstein, L. B.; Wood, M. H.; Zachariou, N.; Zana, L.; Zhang, J.; Zhao, Z. W.; Zonta, I.; CLAS Collaboration

    2015-11-01

    We present the final results for the deuteron spin structure functions obtained from the full data set collected in 2000-2001 with Jefferson Lab's continuous electron beam accelerator facility (CEBAF) using the CEBAF large acceptance spectrometer (CLAS). Polarized electrons with energies of 1.6, 2.5, 4.2, and 5.8 GeV were scattered from deuteron (15ND3 ) targets, dynamically polarized along the beam direction, and detected with CLAS. From the measured double-spin asymmetry, the virtual photon absorption asymmetry A1d and the polarized structure function g1d were extracted over a wide kinematic range (0.05 GeV2precision and dense kinematic coverage of these data can aid in future extractions of polarized parton distributions, tests of perturbative QCD predictions for the quark polarization at large x , a better understanding of quark-hadron duality, and more precise values for higher-twist matrix elements in the framework of the operator product expansion.

  3. Precise determination of the deuteron spin structure at low to moderate Q2 with CLAS and extraction of the neutron contribution

    DOE PAGESBeta

    Guler, N.; Fersch, R. G.; Kuhn, S. E.; Bosted, P.; Griffioen, K. A.; Keith, C.; Minehart, R.; Prok, Y.; Adhikari, K. P.; Adikaram, D.; et al

    2015-11-02

    In this study, we present the final results for the deuteron spin structure functions obtained from the full data set collected with Jefferson Lab's CLAS in 2000-2001. Polarized electrons with energies of 1.6, 2.5, 4.2 and 5.8 GeV were scattered from deuteron (15ND3) targets, dynamically polarized along the beam direction, and detected with CLAS. From the measured double spin asymmetry, the virtual photon absorption asymmetry Ad1 and the polarized structure function gd1 were extracted over a wide kinematic range (0.05 GeV2 < Q2 < 5 GeV2 and 0.9 GeV < W < 3 GeV). We use an unfolding procedure andmore » a parametrization of the corresponding proton results to extract from these data the polarized structure functions An1 and g1n of the (bound) neutron, which are so far unknown in the resonance region, W < 2 GeV. We compare our final results, including several moments of the deuteron and neutron spin structure functions, with various theoretical models and expectations as well as parametrizations of the world data. The unprecedented precision and dense kinematic coverage of these data can aid in future extractions of polarized parton distributions, tests of perturbative QCD predictions for the quark polarization at large x, a better understanding of quark-hadron duality, and more precise values for higher-twist matrix elements in the framework of the Operator Product Expansion.« less

  4. Comparative performance study of different sample introduction techniques for rapid and precise selenium isotope ratio determination using multi-collector inductively coupled plasma mass spectrometry (MC-ICP/MS).

    PubMed

    Elwaer, Nagmeddin; Hintelmann, Holger

    2007-11-01

    The analytical performance of five sample introduction systems, a cross flow nebulizer spray chamber, two different solvent desolvation systems, a multi-mode sample introduction system (MSIS), and a hydride generation (LI2) system were compared for the determination of Se isotope ratio measurements using multi-collector inductively coupled plasma mass spectrometry (MC-ICP/MS). The optimal operating parameters for obtaining the highest Se signal-to-noise (S/N) ratios and isotope ratio precision for each sample introduction were determined. The hydride generation (LI2) system was identified as the most suitable sample introduction method yielding maximum sensitivity and precision for Se isotope ratio measurement. It provided five times higher S/N ratios for all Se isotopes compared to the MSIS, 20 times the S/N ratios of both desolvation units, and 100 times the S/N ratios produced by the conventional spray chamber sample introduction method. The internal precision achieved for the (78)Se/(82)Se ratio at 100 ng mL(-1) Se with the spray chamber, two desolvation, MSIS, and the LI2 systems coupled to MC-ICP/MS was 150, 125, 114, 13, and 7 ppm, respectively. Instrument mass bias factors (K) were calculated using an exponential law correction function. Among the five studied sample introduction systems the LI2 showed the lowest mass bias of -0.0265 and the desolvation system showed the largest bias with -0.0321. PMID:17726602

  5. A comparative study of the size-heterogeneous high mannose oligosaccharides of some insect vitellins.

    PubMed

    Nordin, J H; Gochoco, C H; Wojchowski, D M; Kunkel, J G

    1984-01-01

    Comparative studies of the carbohydrate component from vitellins of the cockroaches Blattella germanica, Blaberus discoidalis, Periplaneta americana and Simploce capitata and the locust Locusta migratoria have been conducted. Chemical, enzymatic and chromatographic analyses show that each vitellin contains variably processed high mannose type oligosaccharides. While all have a common size range they occur as two distinct classes based on the proportion of individual saccharides present. Oligosaccharide size distribution is not a characteristic of an individual animal but of the species. Because oligosaccharide heterogeneity also occurs in B. germanica vitellogenin (the hemolymph precursor of vitellin), it does not result from structural changes during or after its uptake by the egg. PMID:6509925

  6. Precision laser cutting

    SciTech Connect

    Kautz, D.D.; Anglin, C.D.; Ramos, T.J.

    1990-01-19

    Many materials that are otherwise difficult to fabricate can be cut precisely with lasers. This presentation discusses the advantages and limitations of laser cutting for refractory metals, ceramics, and composites. Cutting in these materials was performed with a 400-W, pulsed Nd:YAG laser. Important cutting parameters such as beam power, pulse waveforms, cutting gases, travel speed, and laser coupling are outlined. The effects of process parameters on cut quality are evaluated. Three variables are used to determine the cut quality: kerf width, slag adherence, and metallurgical characteristics of recast layers and heat-affected zones around the cuts. Results indicate that ductile materials with good coupling characteristics (such as stainless steel alloys and tantalum) cut well. Materials lacking one or both of these properties (such as tungsten and ceramics) are difficult to cut without proper part design, stress relief, or coupling aids. 3 refs., 2 figs., 1 tab.

  7. Precision cleaning apparatus and method

    DOEpatents

    Schneider, T.W.; Frye, G.C.; Martin, S.J.

    1998-01-13

    A precision cleaning apparatus and method are disclosed. The precision cleaning apparatus includes a cleaning monitor further comprising an acoustic wave cleaning sensor such as a quartz crystal microbalance (QCM), a flexural plate wave (FPW) sensor, a shear horizontal acoustic plate mode (SH--APM) sensor, or a shear horizontal surface acoustic wave (SH--SAW) sensor; and measurement means connectable to the sensor for measuring in-situ one or more electrical response characteristics that vary in response to removal of one or more contaminants from the sensor and a workpiece located adjacent to the sensor during cleaning. Methods are disclosed for precision cleaning of one or more contaminants from a surface of the workpiece by means of the cleaning monitor that determines a state of cleanliness and any residual contamination that may be present after cleaning; and also for determining an effectiveness of a cleaning medium for removing one or more contaminants from a workpiece. 11 figs.

  8. Precision cleaning apparatus and method

    DOEpatents

    Schneider, Thomas W.; Frye, Gregory C.; Martin, Stephen J.

    1998-01-01

    A precision cleaning apparatus and method. The precision cleaning apparatus includes a cleaning monitor further comprising an acoustic wave cleaning sensor such as a quartz crystal microbalance (QCM), a flexural plate wave (FPW) sensor, a shear horizontal acoustic plate mode (SH--APM) sensor, or a shear horizontal surface acoustic wave (SH--SAW) sensor; and measurement means connectable to the sensor for measuring in-situ one or more electrical response characteristics that vary in response to removal of one or more contaminants from the sensor and a workpiece located adjacent to the sensor during cleaning. Methods are disclosed for precision cleaning of one or more contaminants from a surface of the workpiece by means of the cleaning monitor that determines a state of cleanliness and any residual contamination that may be present after cleaning; and also for determining an effectiveness of a cleaning medium for removing one or more contaminants from a workpiece.

  9. Study on the applicability of a precise, accurate method for rapid evaluation of engine and lubricant performance. [determination of wear metal in used lubricating oils

    NASA Technical Reports Server (NTRS)

    Kinard, J. T.

    1975-01-01

    The development of a procedure for obtaining data related to wear metal determinations in used lubricants is discussed. The procedure makes it possible to obtain rapid, simultaneous determinations of a number of wear metals at levels of parts per thousand to low parts per billion using a small amount of sample. The electrode assembly and instrumentation used in the process are described. Samples of data obtained from tests conducted under controlled conditions are tabulated.

  10. A gravimetric analysis of protein-oligosaccharide interactions.

    PubMed

    Rudd, T; Gallagher, J T; Ron, D; Nichols, R J; Fernig, D G

    2003-04-01

    Interactions between an immobilized, heparin-derived octasaccharide and growth factors have been observed using a quartz crystal microbalance-dissipation (QCM-D). This device can measure the amount of growth factors binding to the octasaccharide surface and also the change of dissipation of the surface. Dissipation is a measure of how the adhered material 'damps' the surface vibrations. The octasaccharides were anchored through their reducing ends by the intermediary of the alkanethiol molecule, which covalently binds to the crystal surface through the thiol group. As expected, heparin sulphate binding growth factors bound to the octasaccharide, but the change in mass of growth factor bound per unit change in dissipation is different for the different growth factors. Suggesting that the structures of the various growth factor-octasaccharide complexes are different, therefore, indicates that the change in dissipation can give insights into the structure, orientation and packing of the oligosaccharide-growth factor complexes.

  11. Inhibition of raffinose oligosaccharide breakdown delays germination of pea seeds.

    PubMed

    Blöchl, Andreas; Peterbauer, Thomas; Richter, Andreas

    2007-08-01

    Raffinose family oligosaccharides (RFOs) are almost ubiquitous in seeds and have been hypothesized to constitute an important energy source during germination. To test this hypothesis we applied a specific alpha-galactosidase inhibitor (1-deoxygalactonojirimycin, DGJ) to germinating pea seeds, resulting in a complete blocking of RFO breakdown. The germination rates of DGJ-treated seeds dropped drastically to about 25% of controls two days after imbibition. Similarly, the activities of the key enzymes in the galactose salvage pathway galactokinase, UDP-galactose pyrophosphorylase and UDP-galactose 4'-epimerase, were also significantly lower in seeds treated with the inhibitor. The inhibitory effect on germination could be relieved by galactose but only partially by sucrose, indicating that galactose, in addition to providing easily available energy for growth, may also be an important component of the sugar signaling pathway during germination. Taken together our study, for the first time, provides clear evidence that RFOs play an important role for early germination.

  12. Characterization of oligosaccharides from an antigenic mannan of Saccharomyces cerevisiae.

    PubMed

    Young, M; Davies, M J; Bailey, D; Gradwell, M J; Smestad-Paulsen, B; Wold, J K; Barnes, R M; Hounsell, E F

    1998-08-01

    Mannans of the yeast Saccharomyces cerevisiae have been implicated as containing the allergens to which bakers and brewers are sensitive and also the antigen recognized by patients with Crohn's disease. A fraction of S. cerevisiae mannan, Sc500, having high affinity for antibodies in Crohn's patients has been characterized by NMR spectroscopy followed by fragmentation using alkaline elimination, partial acid hydrolysis and acetolysis. The released oligosaccharides were separated by gel filtration on a Biogel P4 column and analyzed by fluorescence labeling, HPLC and methylation analysis. The relationship between structure and antigen activity was measured by competitive ELISA. The antigenic activity of the original high molecular weight mannan could be ascribed to terminal Manalpha1-->3Manalpha1-->2 sequences which are rarely found in human glycoproteins but were over-represented in Sc500 compared to other yeast mannans.

  13. Breast Milk Oligosaccharides: Structure-Function Relationships in the Neonate

    PubMed Central

    Smilowitz, Jennifer T.; Lebrilla, Carlito B.; Mills, David A.; German, J. Bruce; Freeman, Samara L.

    2015-01-01

    In addition to providing complete postnatal nutrition, breast milk is a complex biofluid that delivers bioactive components for the growth and development of the intestinal and immune systems. Lactation is a unique opportunity to understand the role of diet in shaping the intestinal environment including the infant microbiome. Of considerable interest is the diversity and abundance of milk glycans that are energetically costly for the mammary gland to produce yet indigestible by infants. Milk glycans comprise free oligosaccharides, glycoproteins, glycopeptides, and glycolipids. Emerging technological advances are enabling more comprehensive, sensitive, and rapid analyses of these different classes of milk glycans. Understanding the impact of inter- and intraindividual glycan diversity on function is an important step toward interventions aimed at improving health and preventing disease. This review discusses the state of technology for glycan analysis and how specific structure-function knowledge is enhancing our understanding of early nutrition in the neonate. PMID:24850388

  14. Primary structure determination of five sialylated oligosaccharides derived from bronchial mucus glycoproteins of patients suffering from cystic fibrosis. The occurrence of the NeuAc alpha(2----3)Gal beta(1----4)[Fuc alpha(1----3)] GlcNAc beta(1----.) structural element revealed by 500-MHz 1H NMR spectroscopy.

    PubMed

    Lamblin, G; Boersma, A; Klein, A; Roussel, P; van Halbeek, H; Vliegenthart, J F

    1984-07-25

    The structure of sialylated carbohydrate units of bronchial mucins obtained from cystic fibrosis patients was investigated by 500-MHz 1H NMR spectroscopy in conjunction with sugar analysis. After subjecting the mucins to alkaline borohydride degradation, sialylated oligosaccharide-alditols were isolated by anion-exchange chromatography and fractionated by high performance liquid chromatography. Five compounds could be obtained in a rather pure state; their structures were established as the following: A-1, NeuAc alpha(2----3)Gal beta(1----4) [Fuc alpha(1----3)]GlcNAc beta(1----3)Gal-NAc-ol; A-2, NeuAc alpha(2----3)Gal beta(1----4)GlcNAc beta(1----6)-[GlcNAc beta (1----3)]GalNAc-o1; A-3, NeuAc alpha(2----3)Gal beta-(1----4)[Fuc alpha(1----3)]GlcNAc beta(1----3)Gal beta(1----3) GalNAc-o1; A-4, NeuAc alpha(2----3)Gal beta(1----4)[Fuc alpha(1----3)]Glc-NAc NAc beta(1----6)[GlcNAc beta(1----3)]GalNAc-o1; A-6,NeuAc alpha-(2----3) Gal beta(1----4)[Fuc alpha(1----3)]GlcNAc beta(1----6)[Gal beta-(1----4) GlcNAc beta(1----3)]GalNAc-o1. The simultaneous presence of sialic acid in alpha(2----3)-linkage to Gal and fucose in alpha(1----3)-linkage to GlcNAc of the same N-acetyllactosamine unit could be adequately proved by high resolution 1H NMR spectroscopy. This sequence constitutes a novel structural element for mucins. PMID:6746638

  15. Primary structure determination of five sialylated oligosaccharides derived from bronchial mucus glycoproteins of patients suffering from cystic fibrosis. The occurrence of the NeuAc alpha(2----3)Gal beta(1----4)[Fuc alpha(1----3)] GlcNAc beta(1----.) structural element revealed by 500-MHz 1H NMR spectroscopy.

    PubMed

    Lamblin, G; Boersma, A; Klein, A; Roussel, P; van Halbeek, H; Vliegenthart, J F

    1984-07-25

    The structure of sialylated carbohydrate units of bronchial mucins obtained from cystic fibrosis patients was investigated by 500-MHz 1H NMR spectroscopy in conjunction with sugar analysis. After subjecting the mucins to alkaline borohydride degradation, sialylated oligosaccharide-alditols were isolated by anion-exchange chromatography and fractionated by high performance liquid chromatography. Five compounds could be obtained in a rather pure state; their structures were established as the following: A-1, NeuAc alpha(2----3)Gal beta(1----4) [Fuc alpha(1----3)]GlcNAc beta(1----3)Gal-NAc-ol; A-2, NeuAc alpha(2----3)Gal beta(1----4)GlcNAc beta(1----6)-[GlcNAc beta (1----3)]GalNAc-o1; A-3, NeuAc alpha(2----3)Gal beta-(1----4)[Fuc alpha(1----3)]GlcNAc beta(1----3)Gal beta(1----3) GalNAc-o1; A-4, NeuAc alpha(2----3)Gal beta(1----4)[Fuc alpha(1----3)]Glc-NAc NAc beta(1----6)[GlcNAc beta(1----3)]GalNAc-o1; A-6,NeuAc alpha-(2----3) Gal beta(1----4)[Fuc alpha(1----3)]GlcNAc beta(1----6)[Gal beta-(1----4) GlcNAc beta(1----3)]GalNAc-o1. The simultaneous presence of sialic acid in alpha(2----3)-linkage to Gal and fucose in alpha(1----3)-linkage to GlcNAc of the same N-acetyllactosamine unit could be adequately proved by high resolution 1H NMR spectroscopy. This sequence constitutes a novel structural element for mucins.

  16. Human milk oligosaccharides: Every baby needs a sugar mama

    PubMed Central

    Bode, Lars

    2012-01-01

    Human milk oligosaccharides (HMOs) are a family of structurally diverse unconjugated glycans that are highly abundant in and unique to human milk. Originally, HMOs were discovered as a prebiotic “bifidus factor” that serves as a metabolic substrate for desired bacteria and shapes an intestinal microbiota composition with health benefits for the breast-fed neonate. Today, HMOs are known to be more than just “food for bugs”. An accumulating body of evidence suggests that HMOs are antiadhesive antimicrobials that serve as soluble decoy receptors, prevent pathogen attachment to infant mucosal surfaces and lower the risk for viral, bacterial and protozoan parasite infections. In addition, HMOs may modulate epithelial and immune cell responses, reduce excessive mucosal leukocyte infiltration and activation, lower the risk for necrotizing enterocolitis and provide the infant with sialic acid as a potentially essential nutrient for brain development and cognition. Most data, however, stem from in vitro, ex vivo or animal studies and occasionally from association studies in mother–infant cohorts. Powered, randomized and controlled intervention studies will be needed to confirm relevance for human neonates. The first part of this review introduces the pioneers in HMO research, outlines HMO structural diversity and describes what is known about HMO biosynthesis in the mother's mammary gland and their m