Science.gov

Sample records for dimensionless numbers expressed

  1. Dimensionless Numbers Expressed in Terms of Common CVD Process Parameters

    NASA Technical Reports Server (NTRS)

    Kuczmarski, Maria A.

    1999-01-01

    A variety of dimensionless numbers related to momentum and heat transfer are useful in Chemical Vapor Deposition (CVD) analysis. These numbers are not traditionally calculated by directly using reactor operating parameters, such as temperature and pressure. In this paper, these numbers have been expressed in a form that explicitly shows their dependence upon the carrier gas, reactor geometry, and reactor operation conditions. These expressions were derived for both monatomic and diatomic gases using estimation techniques for viscosity, thermal conductivity, and heat capacity. Values calculated from these expressions compared well to previously published values. These expressions provide a relatively quick method for predicting changes in the flow patterns resulting from changes in the reactor operating conditions.

  2. Dimensionless numbers in additive manufacturing

    NASA Astrophysics Data System (ADS)

    Mukherjee, T.; Manvatkar, V.; De, A.; DebRoy, T.

    2017-02-01

    The effects of many process variables and alloy properties on the structure and properties of additively manufactured parts are examined using four dimensionless numbers. The structure and properties of components made from 316 Stainless steel, Ti-6Al-4V, and Inconel 718 powders for various dimensionless heat inputs, Peclet numbers, Marangoni numbers, and Fourier numbers are studied. Temperature fields, cooling rates, solidification parameters, lack of fusion defects, and thermal strains are examined using a well-tested three-dimensional transient heat transfer and fluid flow model. The results show that lack of fusion defects in the fabricated parts can be minimized by strengthening interlayer bonding using high values of dimensionless heat input. The formation of harmful intermetallics such as laves phases in Inconel 718 can be suppressed using low heat input that results in a small molten pool, a steep temperature gradient, and a fast cooling rate. Improved interlayer bonding can be achieved at high Marangoni numbers, which results in vigorous circulation of liquid metal, larger pool dimensions, and greater depth of penetration. A high Fourier number ensures rapid cooling, low thermal distortion, and a high ratio of temperature gradient to the solidification growth rate with a greater tendency of plane front solidification.

  3. Dirac cosmology. [large dimensionless numbers relation to universe age

    NASA Technical Reports Server (NTRS)

    Canuto, V.; Lodenquai, J.

    1977-01-01

    The large numbers hypothesis (LNH) linking the magnitude of large dimensionless ratios in physics (on the order of 10 to the 40th power) to cosmic time is examined. The LNH is checked against evidence on 3K background radiation of the universe and the (log N, log S)-relation for radio galaxies. Earlier criticisms of LNH by Gamow and Teller are examined, and alternative hypotheses put forth by Dicke and Carter (1974) are discussed. The discussion covers: continuous (additive or multiplicative) creation of matter, the Einstein metric and the atomic metric, and general cosmological and local astronomical implications of LNH. LNH is also viewed in relation to solar evolution and pulsar physics.

  4. Reynolds-number dependence of the dimensionless dissipation rate in homogeneous magnetohydrodynamic turbulence

    NASA Astrophysics Data System (ADS)

    Linkmann, Moritz; Berera, Arjun; Goldstraw, Erin E.

    2017-01-01

    This paper examines the behavior of the dimensionless dissipation rate Cɛ for stationary and nonstationary magnetohydrodynamic (MHD) turbulence in the presence of external forces. By combining with previous studies for freely decaying MHD turbulence, we obtain here both the most general model equation for Cɛ applicable to homogeneous MHD turbulence and a comprehensive numerical study of the Reynolds number dependence of the dimensionless total energy dissipation rate at unity magnetic Prandtl number. We carry out a series of medium to high resolution direct numerical simulations of mechanically forced stationary MHD turbulence in order to verify the predictions of the model equation for the stationary case. Furthermore, questions of nonuniversality are discussed in terms of the effect of external forces as well as the level of cross- and magnetic helicity. The measured values of the asymptote Cɛ ,∞ lie between 0.193 ≤Cɛ ,∞≤0.268 for free decay, where the value depends on the initial level of cross- and magnetic helicities. In the stationary case we measure Cɛ ,∞=0.223 .

  5. Reynolds-number dependence of the dimensionless dissipation rate in homogeneous magnetohydrodynamic turbulence.

    PubMed

    Linkmann, Moritz; Berera, Arjun; Goldstraw, Erin E

    2017-01-01

    This paper examines the behavior of the dimensionless dissipation rate C_{ɛ} for stationary and nonstationary magnetohydrodynamic (MHD) turbulence in the presence of external forces. By combining with previous studies for freely decaying MHD turbulence, we obtain here both the most general model equation for C_{ɛ} applicable to homogeneous MHD turbulence and a comprehensive numerical study of the Reynolds number dependence of the dimensionless total energy dissipation rate at unity magnetic Prandtl number. We carry out a series of medium to high resolution direct numerical simulations of mechanically forced stationary MHD turbulence in order to verify the predictions of the model equation for the stationary case. Furthermore, questions of nonuniversality are discussed in terms of the effect of external forces as well as the level of cross- and magnetic helicity. The measured values of the asymptote C_{ɛ,∞} lie between 0.193≤C_{ɛ,∞}≤0.268 for free decay, where the value depends on the initial level of cross- and magnetic helicities. In the stationary case we measure C_{ɛ,∞}=0.223.

  6. Asymmetry during a horizontal annular flow in a micro-channel: optical measurements and effect of dimensionless numbers

    NASA Astrophysics Data System (ADS)

    Capo, C.; Layssac, T.; Lips, S.; Mauro, A. W.; Revellin, R.

    2017-01-01

    New applications of HFC refrigerants in organic Rankine cycles at high saturation temperatures and the wider use of CO2 for air-conditioning have pushed research to the characterization of two-phase heat transfer at medium/high reduced pressures and have pointed out the effect of these operating conditions on asymmetric distribution of refrigerant around tube perimeter and its indirect effect on heat transfer. Currently there is a lack of data about asymmetric distribution of liquid film at the wall, especially for refrigerants and micro-channels. In order to have a physical evidence of this asymmetry also for micro-channels and approach to a relationship between this phenomenon and dimensionless parameters, new data are here presented. The asymmetric annular flow of the refrigerant R245fa inside a horizontal, round 2.95 mm inner diameter channel is studied with pictures captured by a high speed video camera. The experimental results here presented were obtained at saturation temperatures equal to 20 °C and 40 °C at low mass velocities (50, 100 and 200 kg m-2s-1) to asymmetric distribution, enriching the database presented in previous studies. The new dimensionless parameter, eccentricity, has been related to the dimensionless groups: Froude and Bond numbers, and Martinelli parameter, showing the mutual correlation among them.

  7. Dimensionless cosmology

    NASA Astrophysics Data System (ADS)

    Narimani, Ali; Moss, Adam; Scott, Douglas

    2012-10-01

    Although it is well known that any consideration of the variations of fundamental constants should be restricted to their dimensionless combinations, the literature on variations of the gravitational constant G is entirely dimensionfull. To illustrate applications of this to cosmology, we explicitly give a dimensionless version of the parameters of the standard cosmological model, and describe the physics of both Big Bang Nucleosynthesis and recombination in a dimensionless manner. Rigorously determining how to talk about the model in a way which avoids physical dimensions is a requirement for proceeding with a calculation to constrain time-varying fundamental constants. The issue that appears to have been missed in many studies is that in cosmology the strength of gravity is bound up in the cosmological equations, and the epoch at which we live is a crucial part of the model. We argue that it is useful to consider the hypothetical situation of communicating with another civilization (with entirely different units), comparing only dimensionless constants, in order to decide if we live in a Universe governed by precisely the same physical laws. In this thought experiment, we would also have to compare epochs, which can be defined by giving the value of any one of the evolving cosmological parameters. By setting things up carefully in this way one can avoid inconsistent results when considering variable constants, caused by effectively fixing more than one parameter today. We show examples of this effect by considering microwave background anisotropies, being careful to maintain dimensionlessness throughout. We present Fisher matrix calculations to estimate how well the fine structure constants for electromagnetism and gravity can be determined with future microwave background experiments. We highlight how one can be misled by simply adding G to the usual cosmological parameter set.

  8. Scaling up adsorption media reactors for copper removal with the aid of dimensionless numbers.

    PubMed

    Chang, Ni-Bin; Houmann, Cameron; Wanielista, Martin

    2016-02-01

    Adsorption media may be used to sorb copper in an aquatic environment for pollution control. Effective design of adsorption media reactors is highly dependent on selection of the hydraulic residence time when scaling up a pilot-scale reactor to a field-scale reactor. This paper seeks to improve scaling-up technique of the reactor design process through the use of the Damköhler and Péclet numbers via a dimensional analysis. A new scaling-up theory is developed in this study through a joint consideration of the Damköhler and Péclet numbers for a constant media particle size such that a balance between transport control and reaction control can be harmonized. A series of column breakthrough tests at varying hydraulic residence times revealed a clear peak adsorption capacity at a Damköhler number of 2.74. The Péclet numbers for the column breakthrough tests indicated that mechanical dispersion is an important effect that requires further consideration in the scaling-up process. However, perfect similitude of the Damköhler number cannot be maintained for a constant media particle size, and relaxation of hydrodynamic similitude through variation of the Péclet number must occur.

  9. Advanced control of liquid water region in diffusion media of polymer electrolyte fuel cells through a dimensionless number

    SciTech Connect

    Wang, Yun; Chen, Ken S.

    2016-03-21

    In the present study, a three-dimension (3-D) model of polymer electrolyte fuel cells (PEFCs) is employed to investigate the complex, non-isothermal, two-phase flow in the gas diffusion layer (GDL). Phase change in gas flow channels is explained, and a simplified approach accounting for phase change is incorporated into the fuel cell model. It is found that the liquid water contours in the GDL are similar along flow channels when the channels are subject to two-phase flow. Here, analysis is performed on a dimensionless parameter Da0 introduced in our previous paper and the parameter is further evaluated in a realistic fuel cell. We found that the GDL's liquid water (or liquid-free) region is determined by the Da0 number which lumps several parameters, including the thermal conductivity and operating temperature. By adjusting these factors, a liquid-free GDL zone can be created even though the channel stream is two-phase flow. Such a liquid-free zone is adjacent to the two-phase region, benefiting local water management, namely avoiding both severe flooding and dryness.

  10. Advanced control of liquid water region in diffusion media of polymer electrolyte fuel cells through a dimensionless number

    NASA Astrophysics Data System (ADS)

    Wang, Yun; Chen, Ken S.

    2016-05-01

    In the present work, a three-dimension (3-D) model of polymer electrolyte fuel cells (PEFCs) is employed to investigate the complex, non-isothermal, two-phase flow in the gas diffusion layer (GDL). Phase change in gas flow channels is explained, and a simplified approach accounting for phase change is incorporated into the fuel cell model. It is found that the liquid water contours in the GDL are similar along flow channels when the channels are subject to two-phase flow. Analysis is performed on a dimensionless parameter Da0 introduced in our previous paper [Y. Wang and K. S. Chen, Chemical Engineering Science 66 (2011) 3557-3567] and the parameter is further evaluated in a realistic fuel cell. We found that the GDL's liquid water (or liquid-free) region is determined by the Da0 number which lumps several parameters, including the thermal conductivity and operating temperature. By adjusting these factors, a liquid-free GDL zone can be created even though the channel stream is two-phase flow. Such a liquid-free zone is adjacent to the two-phase region, benefiting local water management, namely avoiding both severe flooding and dryness.

  11. Advanced control of liquid water region in diffusion media of polymer electrolyte fuel cells through a dimensionless number

    DOE PAGES

    Wang, Yun; Chen, Ken S.

    2016-03-21

    In the present study, a three-dimension (3-D) model of polymer electrolyte fuel cells (PEFCs) is employed to investigate the complex, non-isothermal, two-phase flow in the gas diffusion layer (GDL). Phase change in gas flow channels is explained, and a simplified approach accounting for phase change is incorporated into the fuel cell model. It is found that the liquid water contours in the GDL are similar along flow channels when the channels are subject to two-phase flow. Here, analysis is performed on a dimensionless parameter Da0 introduced in our previous paper and the parameter is further evaluated in a realistic fuelmore » cell. We found that the GDL's liquid water (or liquid-free) region is determined by the Da0 number which lumps several parameters, including the thermal conductivity and operating temperature. By adjusting these factors, a liquid-free GDL zone can be created even though the channel stream is two-phase flow. Such a liquid-free zone is adjacent to the two-phase region, benefiting local water management, namely avoiding both severe flooding and dryness.« less

  12. Dimensionless numbers and correlating equations for the analysis of the membrane-gas diffusion electrode assembly in polymer electrolyte fuel cells

    NASA Astrophysics Data System (ADS)

    Gyenge, E. L.

    The Quraishi-Fahidy method [Can. J. Chem. Eng. 59 (1981) 563] was employed to derive characteristic dimensionless numbers for the membrane-electrolyte, cathode catalyst layer and gas diffuser, respectively, based on the model presented by Bernardi and Verbrugge for polymer electrolyte fuel cells [AIChE J. 37 (1991) 1151]. Monomial correlations among dimensionless numbers were developed and tested against experimental and mathematical modeling results. Dimensionless numbers comparing the bulk and surface-convective ionic conductivities, the electric and viscous forces and the current density and the fixed surface charges, were employed to describe the membrane ohmic drop and its non-linear dependence on current density due to membrane dehydration. The analysis of the catalyst layer yielded electrode kinetic equivalents of the second Damköhler number and Thiele modulus, influencing the penetration depth of the oxygen reduction front based on the pseudohomogeneous film model. The correlating equations for the catalyst layer could describe in a general analytical form, all the possible electrode polarization scenarios such as electrode kinetic control coupled or not with ionic and/or oxygen mass transport limitation. For the gas diffusion-backing layer correlations are presented in terms of the Nusselt number for mass transfer in electrochemical systems. The dimensionless number-based correlating equations for the membrane electrode assembly (MEA) could provide a practical approach to quantify single-cell polarization results obtained under a variety of experimental conditions and to implement them in models of the fuel cell stack.

  13. An empirical/theoretical model with dimensionless numbers to predict the performance of electrodialysis systems on the basis of operating conditions.

    PubMed

    Karimi, Leila; Ghassemi, Abbas

    2016-07-01

    Among the different technologies developed for desalination, the electrodialysis/electrodialysis reversal (ED/EDR) process is one of the most promising for treating brackish water with low salinity when there is high risk of scaling. Multiple researchers have investigated ED/EDR to optimize the process, determine the effects of operating parameters, and develop theoretical/empirical models. Previously published empirical/theoretical models have evaluated the effect of the hydraulic conditions of the ED/EDR on the limiting current density using dimensionless numbers. The reason for previous studies' emphasis on limiting current density is twofold: 1) to maximize ion removal, most ED/EDR systems are operated close to limiting current conditions if there is not a scaling potential in the concentrate chamber due to a high concentration of less-soluble salts; and 2) for modeling the ED/EDR system with dimensionless numbers, it is more accurate and convenient to use limiting current density, where the boundary layer's characteristics are known at constant electrical conditions. To improve knowledge of ED/EDR systems, ED/EDR models should be also developed for the Ohmic region, where operation reduces energy consumption, facilitates targeted ion removal, and prolongs membrane life compared to limiting current conditions. In this paper, theoretical/empirical models were developed for ED/EDR performance in a wide range of operating conditions. The presented ion removal and selectivity models were developed for the removal of monovalent ions and divalent ions utilizing the dominant dimensionless numbers obtained from laboratory scale electrodialysis experiments. At any system scale, these models can predict ED/EDR performance in terms of monovalent and divalent ion removal.

  14. General expression for laminar forced and natural convection heat transfer from isothermal flat plates for all Prandtl numbers

    NASA Astrophysics Data System (ADS)

    Yovanovich, M. M.

    1993-07-01

    It is presently shown that the correlation equations for forced and natural convection-involving bloundary-layer flows, over isothermal flat plates, collapse into a simple expression directly relating the dimensionless wall-temperature excess to a novel Prandtl number function. This function is demonstrated to be applicable for the full, zero-to-infinity Prandtl number range. This formulation allows forced and natural convection heat-transfer results to appear on the same graph, as dimensionless temperature excess vs Prandtl number functions.

  15. Dimensionless thermodynamics: a new paradigm for liquid state properties.

    PubMed

    Sanchez, Isaac C

    2014-08-07

    Equations of state in the van der Waals genre suggest that saturated liquids should adhere to the following corresponding states principle (CSP): saturated liquids at the same reduced density (ρR = ρ/ρc) have comparable dimensionless thermodynamic properties. This CSP is shown to be applicable to a variety of thermodynamic properties that include entropy of vaporization, cohesive energy density, thermal expansion coefficient, isothermal compressibility, thermal pressure coefficient, compressibility factor, temperature coefficient of the vapor pressure, heat capacity difference, and surface tension. For two classes of liquids, all properties rendered dimensionless by the proper choice of scaling variables superpose to form "master curves" that illustrate the CSP. Using scaled particle theory, an improved van der Waals model is developed whose results are compared with existing experimental thermodynamic data in dimensionless form. Properly expressing thermodynamic properties in dimensionless form acts to consolidate and harmonize liquid state properties.

  16. Revealing a quantum feature of dimensionless uncertainty in linear and quadratic potentials by changing potential intervals

    NASA Astrophysics Data System (ADS)

    Kheiri, R.

    2016-09-01

    As an undergraduate exercise, in an article (2012 Am. J. Phys. 80 780-14), quantum and classical uncertainties for dimensionless variables of position and momentum were evaluated in three potentials: infinite well, bouncing ball, and harmonic oscillator. While original quantum uncertainty products depend on {{\\hslash }} and the number of states (n), a dimensionless approach makes the comparison between quantum uncertainty and classical dispersion possible by excluding {{\\hslash }}. But the question is whether the uncertainty still remains dependent on quantum number n. In the above-mentioned article, there lies this contrast; on the one hand, the dimensionless quantum uncertainty of the potential box approaches classical dispersion only in the limit of large quantum numbers (n\\to ∞ )—consistent with the correspondence principle. On the other hand, similar evaluations for bouncing ball and harmonic oscillator potentials are equal to their classical counterparts independent of n. This equality may hide the quantum feature of low energy levels. In the current study, we change the potential intervals in order to make them symmetric for the linear potential and non-symmetric for the quadratic potential. As a result, it is shown in this paper that the dimensionless quantum uncertainty of these potentials in the new potential intervals is expressed in terms of quantum number n. In other words, the uncertainty requires the correspondence principle in order to approach the classical limit. Therefore, it can be concluded that the dimensionless analysis, as a useful pedagogical method, does not take away the quantum feature of the n-dependence of quantum uncertainty in general. Moreover, our numerical calculations include the higher powers of the position for the potentials.

  17. The excitation and propagation of dimensionless magnetostatic waves and oscillations in rectangular YIG rods

    NASA Astrophysics Data System (ADS)

    Zhurilenko, B. E.

    1983-04-01

    The spectrum of bulk magnetostatic waves (BMW) and oscillations (BMO) is studied in a rectangular YIG rod during excitation by different antenna systems. Theoretical and experimental results show that, besides the modes whose wave numbers depend on the specimen size, it is possible to excite BMW and BMO modes with various wave field structures. Dependencies and expressions are obtained for these dimensionless modes and oscillations which describe the structure of the wave field both inside and outside the specimen.

  18. Dimensionless Equation of State to Predict Microemulsion Phase Behavior.

    PubMed

    Ghosh, Soumyadeep; Johns, Russell T

    2016-09-06

    Prediction of microemulsion phase behavior for changing state variables is critical to formulation design of surfactant-oil-brine (SOB) systems. SOB systems find applications in various chemical and petroleum processes, including enhanced oil recovery. A dimensional equation-of-state (EoS) was recently presented by Ghosh and Johns1 that relied on estimation of the surfactant tail length and surface area. We give an algorithm for flash calculations for estimation of three-phase Winsor regions that is more robust, simpler, and noniterative by making the equations dimensionless so that estimates of tail length and surface area are no longer needed. We predict phase behavior as a function temperature, pressure, volume, salinity, oil type, oil-water ratio, and surfactant/alcohol concentration. The dimensionless EoS is based on coupling the HLD-NAC (Hydrophilic Lipophilic Difference-Net Average Curvature) equations with new relationships between optimum salinity and solubility. An updated HLD expression that includes pressure is also used to complete the state description. A significant advantage of the dimensionless form of the EoS over the dimensional version is that salinity scans are tuned based only on one parameter, the interfacial volume ratio. Further, stability conditions are developed in a simplified way to predict whether an overall compositions lies within the single, two-, or three-phase regions. Important new microemulsion relationships are also found, the most important of which is that optimum solubilization ratio is equal to the harmonic mean of the oil and water solubilization ratios in the type III region. Thus, only one experimental measurement is needed in the three-phase zone to estimate the optimum solubilization ratio, a result which can aid experimental design and improve estimates of optimum from noisy data. Predictions with changing state variables are illustrated by comparison to experimental data using standard diagrams including a new type

  19. Comment on ‘Dimensionless units in the SI’

    NASA Astrophysics Data System (ADS)

    Leonard, B. P.

    2015-08-01

    In their paper, Mohr and Phillips demonstrate that the SI’s representation of ‘plane angle’ as dimensionless rather than as an independent dimensional quantity continues to create confusion. The authors also address perceived problems in terminology regarding numbers of items, such as discrete events or particles. However, their general philosophy of equating the dimensionlessnumber of items’ to ‘(number of items)  ×  (item name)’ leads to false conclusions, such as that the hertz is equal to 2π radians per second, and therefore not a coherent SI unit. In attempting to specify kinds of entities, the authors introduce descriptive labels into their supposed ‘units,’ resulting in confusion between number of entities and amount of substance. And, in discussing the mole and related fundamental constants, they incorrectly portray the Avogadro constant as a conversion factor, identically equal to 1, thereby corrupting the relationships between the Boltzmann constant and the universal gas constant, and between the elementary charge and the Faraday constant. In my comment, I explain and correct these and related errors.

  20. Dimensionless Parameter Scaling of Diesel Engine Combustion

    NASA Astrophysics Data System (ADS)

    Dowling, David R.; Filipi, Zoran

    1996-11-01

    Combustion in a modern heavy-duty Diesel engine with direct radial fuel injection typically takes place in a short nearly-cylindrical volume at a rate determined by turbulent mixing. Simple dimensionless-parameter scaling laws for turbulent gas-phase mixing and heat transfer have been shown to be effective for a variety of (oxidizer) flow and (fuel) injection conditions within a cylindrical geometry (Edwards et al., AIChE J., Vol. 31, 516 [1985].) (Breidenthal et al., JFM, Vol. 219, 531 [1990].) (Dowling et al., AIAA J. Thermophys. & HT, Vol. 4, 504 [1990].). These studies were driven by chemical laser applications emphasizing long cylinders and sidewall injection. The current investigation seeks to determine the applicability of dimensionless parameter scaling to the instantaneous in-cylinder fuel burning rate in a multi-cylinder Diesel engine typical of Class VIII trucks. Comparisons are made between scaled and unscaled fuel burning rate, as inferred from time-resolved in-cylinder pressure measurements, across the test engine's normal operating range. This research is supported by the US Army Tank-Automotive Research, Development, and Engineering Center.

  1. Stagnation region gas film cooling: Effects of dimensionless coolant temperature

    NASA Technical Reports Server (NTRS)

    Bonnice, M. A.; Lecuyer, M. R.

    1983-01-01

    An experimental investigation was conducted to mode the film cooling performance for a turbine vane leading edge using the stagnation region of a cylinder in cross flow. Experiments were conducted with a single row of spanwise angled (25 deg) coolant holes for a range of the coolant blowing ratio and dimensionless coolant temperature with free stream-to-wall temperature ratio approximately 1.7 and Re sub D = 90000. the cylindrical test surface was instrumented with miniature heat flux gages and wall thermocouples to determine the percentage reduction in the Stanton number as a function of the distance downstream from injection (x/d sub 0) and the location between adjacent holes (z/S). Data from local heat flux measurements are presented for injection from a single row located at 5 deg, 22.9 deg, 40.8 deg, from stagnation using a hole spacing ratio of S/d = 5. The film coolant was injected with T sub c T sub w with a dimensionless coolant temperature in the range 1.18 or equal to theta sub c or equal to 1.56. The data for local Stanton Number Reduction (SNR) showed a significant increase in SNR as theta sub c was increased above 1.0.

  2. Similarity Theory and Dimensionless Numbers in Heat Transfer

    ERIC Educational Resources Information Center

    Marin, E.; Calderon, A.; Delgado-Vasallo, O.

    2009-01-01

    We present basic concepts underlying the so-called similarity theory that in our opinion should be explained in basic undergraduate general physics courses when dealing with heat transport problems, in particular with those involving natural or free convection. A simple example is described that can be useful in showing a criterion for neglecting…

  3. Dimensionless parameters for lidar performance characterization

    NASA Astrophysics Data System (ADS)

    Comerón, Adolfo; Agishev, Ravil R.

    2014-10-01

    A set of three dimensionless parameters is proposed to characterize lidar systems. Two of them are based on an asymptotic approximation of the output signal-to-noise ratio as a function of the input optical power reaching the photoreceiver when there is no background radiation. Of these, one is defined as the ratio between the input signal power level coming from a reference range in a reference atmosphere (reference power level) and the input power level that would produce a reference output signal-to-noise ratio if the photoreceiver operated always in signal-shot noise limited regime. The other is defined as the ratio between the reference power level and the input power level for which the signal-induced shot noise power equals the receiver noise power. A third parameter, defined as the ratio between the background optical power at the photoreceiver input and the reference power level, quantifies the effect of background radiation. With these three parameters a good approximation to the output signal-to-noise ratio of the lidar can be calculated as a function of the power reduction with respect to the power reaching the photodetector in the reference situation. These parameters can also be used to compare and rank the performance of different systems.

  4. Dimensionless erosion laws for cohesive sediment

    USGS Publications Warehouse

    Walder, Joseph S.

    2016-01-01

    A method of achieving a dimensionless collapse of erosion-rate data for cohesive sediments is proposed and shown to work well for data collected in flume-erosion tests on mixtures of sand and mud (silt plus clay sized particles) for a wide range of mud fraction. The data collapse corresponds to a dimensional erosion law of the form E∼(τ−τc)m">E∼(τ−τc)mE∼(τ−τc)m, where E">EE is erosion rate, τ">ττ is shear stress, τc">τcτc is the threshold shear stress for erosion to occur, and m≈7/4">m≈7/4m≈7/4. This result contrasts with the commonly assumed linear erosion law E=kd(τ−τc)">E=kd(τ−τc)E=kd(τ−τc), where kd">kdkd is a measure of how easily sediment is eroded. The data collapse prompts a re-examination of the way that results of the hole-erosion test (HET) and jet-erosion test (JET) are customarily analyzed, and also calls into question the meaningfulness not only of proposed empirical relationships between kd">kdkd and τc">τcτc, but also of the erodibility parameter kd">kdkd itself. Fuller comparison of flume-erosion data with hole-erosion and jet-erosion data will require revised analyses of the HET and JET that drop the assumption m=1">m=1m=1 and, in the case of the JET, certain simplifying assumptions about the mechanics of jet scour.

  5. Determination of Dimensionless Attenuation Coefficient in Shaped Resonators

    NASA Technical Reports Server (NTRS)

    Daniels, C.; Steinetz, B.; Finkbeiner, J.; Raman, G.; Li, X.

    2003-01-01

    The value of dimensionless attenuation coefficient is an important factor when numerically predicting high-amplitude acoustic waves in shaped resonators. Both the magnitude of the pressure waveform and the quality factor rely heavily on this dimensionless parameter. Previous authors have stated the values used, but have not completely explained their methods. This work fully describes the methodology used to determine this important parameter. Over a range of frequencies encompassing the fundamental resonance, the pressure waves were experimentally measured at each end of the shaped resonators. At the corresponding dimensionless acceleration, the numerical code modeled the acoustic waveforms generated in the resonator using various dimensionless attenuation coefficients. The dimensionless attenuation coefficient that most closely matched the pressure amplitudes and quality factors of the experimental and numerical results was determined to be the value to be used in subsequent studies.

  6. A dimensionless parameter model for arc welding processes

    SciTech Connect

    Fuerschbach, P.W.

    1994-12-31

    A dimensionless parameter model previously developed for C0{sub 2} laser beam welding has been shown to be applicable to GTAW and PAW autogenous arc welding processes. The model facilitates estimates of weld size, power, and speed based on knowledge of the material`s thermal properties. The dimensionless parameters can also be used to estimate the melting efficiency, which eases development of weld schedules with lower heat input to the weldment. The mathematical relationship between the dimensionless parameters in the model has been shown to be dependent on the heat flow geometry in the weldment.

  7. Dimensionless parameters to summarize the influence of microbial growth and inhibition on the bioremediation of groundwater contaminants.

    PubMed

    Mohamed, M; Hatfield, K

    2011-09-01

    Monod expressions are preferred over zero- and first-order decay expressions in modeling contaminants biotransformation in groundwater because they better represent complex conditions. However, the wide-range of values reported for Monod parameters suggests each case-study is unique. Such uniqueness restricts the usefulness of modeling, complicates an interpretation of natural attenuation and limits the utility of a bioattenuation assessment to a small number of similar cases. In this paper, four Monod-based dimensionless parameters are developed that summarize the effects of microbial growth and inhibition on groundwater contaminants. The four parameters represent the normalized effective microbial growth rate (η), the normalized critical contaminant/substrate concentration (S*), the critical contaminant/substrate inhibition factor (N), and the bioremediation efficacy (η*). These parameters enable contaminated site managers to assess natural attenuation or augmented bioremediation at multiple sites and then draw comparisons between disparate remediation activities, sites and target contaminants. Simulations results are presented that reveal the sensitivity of these dimensionless parameters to Monod parameters and varying electron donor/acceptor loads. These simulations also show the efficacy of attenuation (η*) varying over space and time. Results suggest electron donor/acceptor amendments maintained at relative concentrations S* between 0.5 and 1.5 produce the highest remediation efficiencies. Implementation of the developed parameters in a case study proves their usefulness.

  8. A dimensionless parameter for classifying hemodynamics in intracranial

    NASA Astrophysics Data System (ADS)

    Asgharzadeh, Hafez; Borazjani, Iman

    2015-11-01

    Rupture of an intracranial aneurysm (IA) is a disease with high rates of mortality. Given the risk associated with the aneurysm surgery, quantifying the likelihood of aneurysm rupture is essential. There are many risk factors that could be implicated in the rupture of an aneurysm. However, the most important factors correlated to the IA rupture are hemodynamic factors such as wall shear stress (WSS) and oscillatory shear index (OSI) which are affected by the IA flows. Here, we carry out three-dimensional high resolution simulations on representative IA models with simple geometries to test a dimensionless number (first proposed by Le et al., ASME J Biomech Eng, 2010), denoted as An number, to classify the flow mode. An number is defined as the ratio of the time takes the parent artery flow transports across the IA neck to the time required for vortex ring formation. Based on the definition, the flow mode is vortex if An>1 and it is cavity if An<1. We show that the specific definition of Le et al. works for sidewall but needs to be modified for bifurcation aneurysms. In addition, we show that this classification works on three-dimensional geometries reconstructed from three-dimensional rotational angiography of human subjects. Furthermore, we verify the correlation of IA flow mode and WSS/OSI on the human subject IA. This work was supported partly by the NIH grant R03EB014860, and the computational resources were partly provided by CCR at UB. We thank Prof. Hui Meng and Dr. Jianping Xiang for providing us the database of aneurysms and helpful discussions.

  9. Exact expressions for ensemble functionals from particle number dependence.

    PubMed

    Joubert, Daniel P

    2012-05-07

    Some properties of exact ensemble density functionals can be determined by examining the particle number dependence of ground state ensemble density matrices for systems where the integer ground state energies satisfy a convexity condition. The results include the observation that the integral of the product of the functional derivative and Fukui function of functionals that can be expressed as the trace of an operator is particle number independent for particle numbers between successive integers and the integral itself is equal to the difference between functionals evaluated at successive integer particle numbers. Expressions that must be satisfied by 2nd and higher order functional derivatives are formulated and equations that must be satisfied point by point in space are derived. Using the analytic Hooke's atom model, it is shown that commonly used correlation functional approximations do not bear any resemblance to a spatially dependent expression derived from the exact second order functional derivative of the correlation functional. It is also shown that two expressions for the mutual Coulomb energy are not equal when approximate exchange and correlation functionals are used.

  10. A dimensionless model of impact piezoelectric energy harvesting with dissipation

    NASA Astrophysics Data System (ADS)

    Fu, Xinlei; Liao, Wei-Hsin

    2016-04-01

    Impact excitation is common in the environment. Impact piezoelectric energy harvesting could realize frequency up-conversion. However, the dissipation mechanism in impact piezoelectric energy harvesting has not been investigated so far. There is no comprehensive model to be able to analyze the impact piezoelectric energy harvesting thoroughly. This paper is aimed to develop a generalized model that considers dissipation mechanism of impact piezoelectric energy harvesting. In this electromechanical model, Hertzian contact theory and impact dissipation mechanism are identified as constitutive mechanisms. The impact force is compared and the energy distribution is analyzed so that input energy corresponds to impact dissipated energy, structural damping dissipated energy and harvested electrical energy. We then nondimensionalize the developed model and define five dimensionless parameters with attributed physical meanings, including dimensionless parameters of impact dissipation, mass ratio, structural damping, electromechanical coupling, and electrical load. We conclude it is more accurate to consider impact dissipation mechanism to predict impact force and harvested energy. The guideline for improving harvested energy based on parametric studies of dimensionless model is to increase mass ratio, to minimize structural damping, to maximize electromechanical coupling, to use optimal load resistance for impedance matching, and to choose proper impact velocity .

  11. Potential problem with mean dimensionless hydrographs at ungaged sites

    USGS Publications Warehouse

    Wahl, Kenneth L.; Rankl, James G.

    1993-01-01

    A flood hydrograph for an ungaged stream site can be estimated from a mean dimensionless hydrograph and estimates of instantaneous peak discharge (Q) and total storm runoff volume (V). However, the time base of the resulting flood hydrograph can be inversely related to the magnitude of the peak discharge if estimates of runoff volume were defined using ordinary least-squares regression relations of the form V=f(Q). Such an inverse relation is not hydrologically consistent. The problem can be solved in several ways. Redefining the relation between V and Q using an alternative model that preserves the variance in V generally will produce exponents for Q that are near 1. The resulting estimated flood-hydrograph volumes will nearly match the original volumes near the mean of the logarithms of V and Q, but will differ as volumes and peak discharges depart from the mean values. The difference will depend on how much the original exponent of Q differed from 1. Another solution is to simply hold T???, the multiplier needed to expand the time base of a mean dimensionless hydrograph into the time base of an estimated flood hydrograph, constant. That solution is a questionable approach if basins vary either in size, shape, or slope. A third solution is to define T??? as a function of time to peak, Tp. Flood volume then depends only on Q, Tp, and the dimensionless hydrograph, thereby removing the need to define a relation for estimating volume.

  12. How the Number of Alleles Influences Gene Expression

    NASA Astrophysics Data System (ADS)

    Hat, Beata; Paszek, Pawel; Kimmel, Marek; Piechor, Kazimierz; Lipniacki, Tomasz

    2007-07-01

    The higher organisms, eukaryotes, are diploid and most of their genes have two homological copies (alleles). However, the number of alleles in a cell is not constant. In the S phase of the cell cycle all the genome is duplicated and then in the G2 phase and mitosis, which together last for several hours, most of the genes have four copies instead of two. Cancer development is, in many cases, associated with a change in allele number. Several genetic diseases are caused by haploinsufficiency: Lack of one of the alleles or its improper functioning. In the paper we consider the stochastic expression of a gene having a variable number of copies. We applied our previously developed method in which the reaction channels are split into slow (connected with change of gene state) and fast (connected with mRNA/protein synthesis/decay), the later being approximated by deterministic reaction rate equations. As a result we represent gene expression as a piecewise deterministic time-continuous Markov process, which is further related with a system of partial differential hyperbolic equations for probability density functions (pdfs) of protein distribution. The stationary pdfs are calculated analytically for haploidal gene or numerically for diploidal and tetraploidal ones. We distinguished nine classes of simultaneous activation of haploid, diploid and tetraploid genes. This allows for analysis of potential consequences of gene duplication or allele loss. We show that when gene activity is autoregulated by a positive feedback, the change in number of gene alleles may have dramatic consequences for its regulation and may not be compensated by the change of efficiency of mRNA synthesis per allele.

  13. Estimating Mass of Inflatable Aerodynamic Decelerators Using Dimensionless Parameters

    NASA Technical Reports Server (NTRS)

    Samareh, Jamshid A.

    2011-01-01

    This paper describes a technique for estimating mass for inflatable aerodynamic decelerators. The technique uses dimensional analysis to identify a set of dimensionless parameters for inflation pressure, mass of inflation gas, and mass of flexible material. The dimensionless parameters enable scaling of an inflatable concept with geometry parameters (e.g., diameter), environmental conditions (e.g., dynamic pressure), inflation gas properties (e.g., molecular mass), and mass growth allowance. This technique is applicable for attached (e.g., tension cone, hypercone, and stacked toroid) and trailing inflatable aerodynamic decelerators. The technique uses simple engineering approximations that were developed by NASA in the 1960s and 1970s, as well as some recent important developments. The NASA Mars Entry and Descent Landing System Analysis (EDL-SA) project used this technique to estimate the masses of the inflatable concepts that were used in the analysis. The EDL-SA results compared well with two independent sets of high-fidelity finite element analyses.

  14. Dimensionless parameters, scaling laws, and the implications for ETG

    SciTech Connect

    Castle, G.G.

    1995-04-20

    ETG will be useful in resolving several physical issues relevant to Spherical Tokamak Reactor concepts. First, it will provide a test of whether transport is Bohm or gyro-Bohm in nature. The second point is that ETG will operate in a completely different range of {rho}* space from other high performance machines, opening up a previously inaccessible region of parameter space. ETG is also a (very) high-{beta} machine. It would be the only device that would have all of its parameters except {rho}* similar to those of a Spherical tokamak Reactor. If it turns out that the transport scales definitively as either Bohm or gyro-Bohm, then extrapolation to reactor conditions with significantly lower values of {rho}* would become more credible. It is also shown that in general one cannot obtain a power law relation in the dimensionless variables for the confinement tim from a power law fit to the engineering variables. It is shown, however, that if T{sub i}/T{sub e} and n{sub i}/n{sub e} are constant or if a modified definition of certain dimensionless variables is adopted, then such a power law conversion is possible.

  15. Methodology of dimensionless multiplicative decomposition for atmospheric lidar evaluation

    NASA Astrophysics Data System (ADS)

    Agishev, Ravil; Gross, Barry; Comeron, Adolfo

    2006-09-01

    In the present paper, we show application examples of united generalized methodology for atmospheric lidar assessment, which uses the dimensionless-parameterization as a core component. It is based on a series of our previous works where the problem of universal parameterization over many lidar technologies were described and analyzed from different points of view. A methodology of spatial-angular filtering efficiency was used for comparison of different receiving system designs on the criterion of stability against background radiation. The dimensionless parameterization concept applied to photodetectors of remote sensing instruments allowed predicting the lidar receiver performance in presence of sky background. The approach can be widely used to evaluate a broad range of lidar system capabilities for a variety of lidar remote sensing applications, as well as to serve as a basis for selection of appropriate lidar system parameters for a specific application. Such a methodology provides generalized, uniform and objective approach for the evaluation of a broad range of lidar types and systems (aerosol, Raman, DIAL), operating on different targets (backscatter or topographic) and under intense sky background conditions, and can be used within the lidar community to compare different lidar instruments.

  16. Bacterial expression system with tightly regulated gene expression and plasmid copy number.

    PubMed

    Bowers, Lisa M; Lapoint, Kathleen; Anthony, Larry; Pluciennik, Anna; Filutowicz, Marcin

    2004-09-29

    A new Escherichia coli host/vector system has been engineered to allow tight and uniform modulation of gene expression and gamma origin (ori) plasmid copy number. Regulation of gamma ori plasmid copy number is achieved through arabinose-inducible expression of the necessary Rep protein, pi, whose gene was integrated into the chromosome of the host strain under control of the P(BAD) promoter. gamma ori replication can be uniformly modulated over 100-fold by changing the concentration of l-arabinose in the growth medium. This strain avoids the problem of all-or-nothing induction of P(BAD) because it is deficient in both arabinose uptake and degradation genes. Arabinose enters the cell by a mutant LacY transporter, LacYA177C, which is expressed from the host chromosome. Although this strain could be compatible with any gamma ori plasmid, we describe the utility of a gamma ori expression vector that allows especially tight regulation of gene expression. With this host/vector system, it is possible to independently modulate gene expression and gene dosage, facilitating the cloning and overproduction of toxic gene products. We describe the successful use of this system for cloning a highly potent toxin, Colicin E3, in the absence of its cognate immunity protein. This system could be useful for cloning genes encoding other potent toxins, screening libraries for potential toxins, and maintaining any gamma ori vector at precise copy levels in a cell.

  17. Dimensionless ratios: Characteristics of quantum liquids and their phase transitions

    NASA Astrophysics Data System (ADS)

    Yu, Yi-Cong; Chen, Yang-Yang; Lin, Hai-Qing; Römer, Rudolf A.; Guan, Xi-Wen

    2016-11-01

    Dimensionless ratios of physical properties can characterize low-temperature phases in a wide variety of materials. As such, the Wilson ratio (WR), the Kadowaki-Woods ratio, and the Wiedemann-Franz law capture essential features of Fermi liquids in metals, heavy fermions, etc. Here we prove that the phases of many-body interacting multicomponent quantum liquids in one dimension (1D) can be described by WRs based on the compressibility, susceptibility, and specific heat associated with each component. These WRs arise due to additivity rules within subsystems reminiscent of the rules for multiresistor networks in series and parallel—a novel and useful characteristic of multicomponent Tomonaga-Luttinger liquids (TLL) independent of microscopic details of the systems. Using experimentally realized multispecies cold atomic gases as examples, we prove that the Wilson ratios uniquely identify phases of TLL, while providing universal scaling relations at the boundaries between phases. Their values within a phase are solely determined by the stiffnesses and sound velocities of subsystems and identify the internal degrees of freedom of said phase such as its spin degeneracy. This finding can be directly applied to a wide range of 1D many-body systems and reveals deep physical insights into recent experimental measurements of the universal thermodynamics in ultracold atoms and spins.

  18. Application of symbolic regression to the derivation of scaling laws for tokamak energy confinement time in terms of dimensionless quantities

    NASA Astrophysics Data System (ADS)

    Murari, A.; Peluso, E.; Lungaroni, M.; Gelfusa, M.; Gaudio, P.

    2016-02-01

    In many scientific applications, it is important to investigate how certain properties scale with the parameters of the systems. The experimental studies of scalings have traditionally been addressed with log regression, which limits the results to power laws and to theoretical and not data-driven dimensionless quantities. This has also been the case in nuclear fusion, in which the scaling of the energy confinement time is a crucial aspect in understanding the physics of transport and in the design of future devices. Traditionally two main assumptions are at the basis of the most widely accepted empirical scaling laws for the confinement time: (a) the dimensionless variables used are the ones derived from the symmetries of the Vlasov equation; (b) the final scalings have the mathematical form of power laws. In this paper, it is shown how symbolic regression (SR), implemented with genetic programming (GP) techniques, can be used to test these hypotheses. Neither assumption is confirmed by the available data of the multi-machine International Tokamak Physics Activity (ITPA) of validated tokamak discharges. The statistically soundest expressions are not power laws and cannot be formulated in terms of the traditional dimensionless quantities. The consequences of the data-driven scaling laws obtained are both practical and theoretical: the confinement time for the ITER can be significantly shorter than foreseen by power laws and different dimensionless variables should be considered for theoretical investigations. On the other hand, higher quality databases should be built to reduce the uncertainties in the extrapolations. It is also worth emphasising that the proposed methodology is fully general and therefore can be applied to any field of science.

  19. A hemodynamic-based dimensionless parameter for predicting rupture of intracranial aneurysms

    NASA Astrophysics Data System (ADS)

    Asgharzadeh, Hafez; Varble, Nicole; Meng, Hui; Borazjani, Iman

    2016-11-01

    Rupture of an intracranial aneurysm (IA) is a disease with high rates of mortality. Given the risk associated with the aneurysm surgery, quantifying the likelihood of aneurysm rupture is essential. There are many risk factors that could be implicated in the rupture of an aneurysm. However, the hemodynamic factors are believed to be the most influential ones. Here, we carry out three-dimensional high resolution simulations on human subjects IAs to test a dimensionless number, denoted as An number, to classify the flow mode. An number is defined as the ratio of the time takes the parent artery flow transports through the expansion region to the time required for vortex formation. Furthermore, we investigate the correlation of IA flow mode and WSS/OSI on the human subject IAs. Finally, we test if An number can distinguish ruptured from unruptured IAs on a database containing 204 human subjects IAs. This work was supported by National Institute Of Health (NIH) Grant R03EB014860 and the Center of Computational Research (CCR) of University at Buffalo.

  20. Linear (in oscillation dimensionless amplitude) interaction between the modes of a nonspherical charged drop in an external electrostatic field

    NASA Astrophysics Data System (ADS)

    Shiryaeva, S. O.; Petrushov, N. A.; Grigor'ev, A. I.

    2016-01-01

    The stability of a heavily charged drop in a weak uniform electrostatic field (in which the equilibrium shape of the drop can be represented by a prolate spheroid) is calculated in the fourth order of smallness in the eccentricity of the spheroidal drop and in the first order of smallness in the drop oscillation dimensionless amplitude. It is found that as the order of approximation in eccentricity grows, so does the number of modes interacting with the initially excited mode. In the given order of smallness, the preferred (initially excited) mode is shown to interact with the nearest eight modes. The drop becomes unstable if such is the second mode.

  1. Identification of candidate growth promoting genes in ovarian cancer through integrated copy number and expression analysis.

    PubMed

    Ramakrishna, Manasa; Williams, Louise H; Boyle, Samantha E; Bearfoot, Jennifer L; Sridhar, Anita; Speed, Terence P; Gorringe, Kylie L; Campbell, Ian G

    2010-04-08

    Ovarian cancer is a disease characterised by complex genomic rearrangements but the majority of the genes that are the target of these alterations remain unidentified. Cataloguing these target genes will provide useful insights into the disease etiology and may provide an opportunity to develop novel diagnostic and therapeutic interventions. High resolution genome wide copy number and matching expression data from 68 primary epithelial ovarian carcinomas of various histotypes was integrated to identify genes in regions of most frequent amplification with the strongest correlation with expression and copy number. Regions on chromosomes 3, 7, 8, and 20 were most frequently increased in copy number (> 40% of samples). Within these regions, 703/1370 (51%) unique gene expression probesets were differentially expressed when samples with gain were compared to samples without gain. 30% of these differentially expressed probesets also showed a strong positive correlation (r > or =0.6) between expression and copy number. We also identified 21 regions of high amplitude copy number gain, in which 32 known protein coding genes showed a strong positive correlation between expression and copy number. Overall, our data validates previously known ovarian cancer genes, such as ERBB2, and also identified novel potential drivers such as MYNN, PUF60 and TPX2.

  2. Identification of Candidate Growth Promoting Genes in Ovarian Cancer through Integrated Copy Number and Expression Analysis

    PubMed Central

    Ramakrishna, Manasa; Williams, Louise H.; Boyle, Samantha E.; Bearfoot, Jennifer L.; Sridhar, Anita; Speed, Terence P.; Gorringe, Kylie L.; Campbell, Ian G.

    2010-01-01

    Ovarian cancer is a disease characterised by complex genomic rearrangements but the majority of the genes that are the target of these alterations remain unidentified. Cataloguing these target genes will provide useful insights into the disease etiology and may provide an opportunity to develop novel diagnostic and therapeutic interventions. High resolution genome wide copy number and matching expression data from 68 primary epithelial ovarian carcinomas of various histotypes was integrated to identify genes in regions of most frequent amplification with the strongest correlation with expression and copy number. Regions on chromosomes 3, 7, 8, and 20 were most frequently increased in copy number (>40% of samples). Within these regions, 703/1370 (51%) unique gene expression probesets were differentially expressed when samples with gain were compared to samples without gain. 30% of these differentially expressed probesets also showed a strong positive correlation (r≥0.6) between expression and copy number. We also identified 21 regions of high amplitude copy number gain, in which 32 known protein coding genes showed a strong positive correlation between expression and copy number. Overall, our data validates previously known ovarian cancer genes, such as ERBB2, and also identified novel potential drivers such as MYNN, PUF60 and TPX2. PMID:20386695

  3. Gene Expression Correlates with the Number of Herpes Viral Genomes Initiating Infection in Single Cells

    PubMed Central

    Cohen, Efrat M.

    2016-01-01

    Viral gene expression varies significantly among genetically identical cells. The sources of these variations are not well understood and have been suggested to involve both deterministic host differences and stochastic viral host interactions. For herpesviruses, only a limited number of incoming viral genomes initiate expression and replication in each infected cell. To elucidate the effect of this limited number of productively infecting genomes on viral gene expression in single cells, we constructed a set of fluorescence-expressing genetically tagged herpes recombinants. The number of different barcodes originating from a single cell is a good representative of the number of incoming viral genomes replicating (NOIVGR) in that cell. We identified a positive correlation between the NOIVGR and viral gene expression, as measured by the fluorescent protein expressed from the viral genome. This correlation was identified in three distinct cell-types, although the average NOIVGR per cell differed among these cell-types. Among clonal single cells, high housekeeping gene expression levels are not supportive of high viral gene expression, suggesting specific host determinants effecting viral infection. We developed a model to predict NOIVGR from cellular parameters, which supports the notion that viral gene expression is tightly linked to the NOIVGR in single-cells. Our results support the hypothesis that the stochastic nature of viral infection and host cell determinants contribute together to the variability observed among infected cells. PMID:27923068

  4. Simple approach to predict APD/PMT lidar detector performance under sky background using dimensionless parametrization

    NASA Astrophysics Data System (ADS)

    Agishev, Ravil; Gross, Barry; Moshary, Fred; Gilerson, Alexander; Ahmed, Samir

    2006-08-01

    In this paper, we developed a simple approach to predict the APD/PMT (avalanche photodiode/photomultiplier) lidar detector performance in the presence of residual skylight background. By normalizing all relevant photodetector noise sources to the quantum noise, we obtain quantitative expressions for the degradation of the signal-to-noise ratio (SNR), the increasing threshold sensitivity of and decreasing lidar operation range. To apply the formalism to any lidar photodetectors operating in the ultra violet, visible and near-infrared spectral regions and to perform a comparative analysis of PMT and APD capabilities as the best photodetectors for ultra-violet (UV), visible (Vis) and near infra-red (NIR) lidar, we utilize a set of spectral characteristics that are built from an envelope of individual PMT and APD component responses. On this basis, the general analysis of system performance under intense background conditions is developed, and practical recommendations on detector use for each spectral region are given. The dimensionless formalism and the generalized detector spectral models used allows our analysis to be applied to nearly any lidar receiver operating over very different signal/background situations.

  5. A new dimensionless index for evaluating cell stiffness-based deformability in microchannel.

    PubMed

    Tsai, Chia-Hung Dylan; Sakuma, Shinya; Arai, Fumihito; Kaneko, Makoto

    2014-04-01

    This paper proposes a new index for evaluating the stiffness-based deformability of a cell using a microchannel. In conventional approaches, the transit time of a cell through a microchannel is often utilized for the evaluation of cell deformability. However, such time includes both the information of cell stiffness and viscosity. In this paper, we eliminate the effect from cell viscosity, and focus on the cell stiffness only. We find that the velocity of a cell varies when it enters a channel, and eventually reaches to equilibrium where the velocity becomes constant. The constant velocity is defined as the equilibrium velocity of the cell, and it is utilized to define the observability of stiffness-based deformability. The necessary and sufficient numbers of sensing points for evaluating stiffness-based deformability are discussed. Through the dimensional analysis on the microchannel system, three dimensionless parameters determining stiffness-based deformability are derived, and a new index is introduced based on these parameters. The experimental study is conducted on the red blood cells from a healthy subject and a diabetes patient. With the proposed index, we showed that the experimental data can be nicely arranged.

  6. On the Role of Dimensionless Elastic Fracture Mechanics.

    DTIC Science & Technology

    1985-07-03

    INDIVIDUAL 22b. TELEPHONE NUMBER 122c. OFFICE SYMS L David A. Glasgow, MAJOR, ’"F ’NA, I DD FORM 1473,83 APR EDTION OF 1 𔃻IB OBSOLETE. unclassified I 5 11...fracture are available in the literature and address various aspects of its consequences, e.g. Goodier in Fracture, Vol. I. The aspect of concern here...various aspects of its consequences, e.g. Goodier in Fracture, Vol. II. The aspect of concern here is the size de- pendence implied by the approach

  7. qPCR for quantification of transgene expression and determination of transgene copy number.

    PubMed

    Fletcher, Stephen J

    2014-01-01

    Quantitative real-time PCR (qPCR) is a mature technology that can be used to accurately quantify the number of copies of a target nucleic acid in a sample. Here, we describe a method for using this technology to determine the copy number of a transgene stably integrated into a plant's genome and to ascertain the level of transgene expression.

  8. Somatic Copy Number Alterations at Oncogenic Loci Show Diverse Correlations with Gene Expression

    NASA Astrophysics Data System (ADS)

    Roszik, Jason; Wu, Chang-Jiun; Siroy, Alan E.; Lazar, Alexander J.; Davies, Michael A.; Woodman, Scott E.; Kwong, Lawrence N.

    2016-01-01

    Somatic copy number alterations (SCNAs) affecting oncogenic drivers have a firmly established role in promoting cancer. However, no agreed-upon standard exists for calling locus-specific amplifications and deletions in each patient sample. Here, we report the correlative analysis of copy number amplitude and length with gene expression across 6,109 samples from The Cancer Genome Atlas (TCGA) dataset across 16 cancer types. Using specificity, sensitivity, and precision-based scores, we assigned optimized amplitude and length cutoffs for nine recurrent SCNAs affecting known oncogenic drivers, using mRNA expression as a functional readout. These cutoffs captured the majority of SCNA-driven, highly-expression-altered samples. The majority of oncogenes required only amplitude cutoffs, as high amplitude samples were almost invariably focal; however, CDKN2A and PTEN uniquely required both amplitude and length cutoffs as primary predictors. For PTEN, these extended to downstream AKT activation. In contrast, SCNA genes located peri-telomerically or in fragile sites showed poor expression-copy number correlations. Overall, our analyses identify optimized amplitude and length cutoffs as efficient predictors of gene expression changes for specific oncogenic SCNAs, yet warn against one-size-fits-all interpretations across all loci. Our results have implications for cancer data analyses and the clinic, where copy number and mutation data are increasingly used to personalize cancer therapy.

  9. Somatic Copy Number Alterations at Oncogenic Loci Show Diverse Correlations with Gene Expression

    PubMed Central

    Roszik, Jason; Wu, Chang-Jiun; Siroy, Alan E.; Lazar, Alexander J.; Davies, Michael A; Woodman, Scott E; Kwong, Lawrence N

    2016-01-01

    Somatic copy number alterations (SCNAs) affecting oncogenic drivers have a firmly established role in promoting cancer. However, no agreed-upon standard exists for calling locus-specific amplifications and deletions in each patient sample. Here, we report the correlative analysis of copy number amplitude and length with gene expression across 6,109 samples from The Cancer Genome Atlas (TCGA) dataset across 16 cancer types. Using specificity, sensitivity, and precision-based scores, we assigned optimized amplitude and length cutoffs for nine recurrent SCNAs affecting known oncogenic drivers, using mRNA expression as a functional readout. These cutoffs captured the majority of SCNA-driven, highly-expression-altered samples. The majority of oncogenes required only amplitude cutoffs, as high amplitude samples were almost invariably focal; however, CDKN2A and PTEN uniquely required both amplitude and length cutoffs as primary predictors. For PTEN, these extended to downstream AKT activation. In contrast, SCNA genes located peri-telomerically or in fragile sites showed poor expression-copy number correlations. Overall, our analyses identify optimized amplitude and length cutoffs as efficient predictors of gene expression changes for specific oncogenic SCNAs, yet warn against one-size-fits-all interpretations across all loci. Our results have implications for cancer data analyses and the clinic, where copy number and mutation data are increasingly used to personalize cancer therapy. PMID:26787600

  10. A HIERARCHICAL BAYESIAN MODEL FOR INFERENCE OF COPY NUMBER VARIANTS AND THEIR ASSOCIATION TO GENE EXPRESSION

    PubMed Central

    Cassese, Alberto; Guindani, Michele; Tadesse, Mahlet G.; Falciani, Francesco; Vannucci, Marina

    2014-01-01

    A number of statistical models have been successfully developed for the analysis of high-throughput data from a single source, but few methods are available for integrating data from different sources. Here we focus on integrating gene expression levels with comparative genomic hybridization (CGH) array measurements collected on the same subjects. We specify a measurement error model that relates the gene expression levels to latent copy number states which, in turn, are related to the observed surrogate CGH measurements via a hidden Markov model. We employ selection priors that exploit the dependencies across adjacent copy number states and investigate MCMC stochastic search techniques for posterior inference. Our approach results in a unified modeling framework for simultaneously inferring copy number variants (CNV) and identifying their significant associations with mRNA transcripts abundance. We show performance on simulated data and illustrate an application to data from a genomic study on human cancer cell lines. PMID:24834139

  11. Three distinct cell populations express extracellular matrix proteins and increase in number during skeletal muscle fibrosis.

    PubMed

    Chapman, Mark A; Mukund, Kavitha; Subramaniam, Shankar; Brenner, David; Lieber, Richard L

    2017-02-01

    Tissue extracellular matrix (ECM) provides structural support and creates unique environments for resident cells (Bateman JF, Boot-Handford RP, Lamandé SR. Nat Rev Genet 10: 173-183, 2009; Kjaer M. Physiol Rev 84: 649-98, 2004). However, the identities of cells responsible for creating specific ECM components have not been determined. In striated muscle, the identity of these cells becomes important in disease when ECM changes result in fibrosis and subsequent increased tissue stiffness and dysfunction. Here we describe a novel approach to isolate and identify cells that maintain the ECM in both healthy and fibrotic muscle. Using a collagen I reporter mouse, we show that there are three distinct cell populations that express collagen I in both healthy and fibrotic skeletal muscle. Interestingly, the number of collagen I-expressing cells in all three cell populations increases proportionally in fibrotic muscle, indicating that all cell types participate in the fibrosis process. Furthermore, while some profibrotic ECM and ECM-associated genes are significantly upregulated in fibrotic muscle, the fibrillar collagen gene expression profile is not qualitatively altered. This suggests that muscle fibrosis in this model results from an increased number of collagen I-expressing cells and not the initiation of a specific fibrotic collagen gene expression program. Finally, in fibrotic muscle, we show that these collagen I-expressing cell populations differentially express distinct ECM proteins-fibroblasts express the fibrillar components of ECM, fibro/adipogenic progenitors cells differentially express basal laminar proteins, and skeletal muscle progenitor cells differentially express genes important for the satellite cell.

  12. High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors

    PubMed Central

    Haverty, Peter M; Hon, Lawrence S; Kaminker, Joshua S; Chant, John; Zhang, Zemin

    2009-01-01

    Background DNA copy number alterations are frequently observed in ovarian cancer, but it remains a challenge to identify the most relevant alterations and the specific causal genes in those regions. Methods We obtained high-resolution 500K SNP array data for 52 ovarian tumors and identified the most statistically significant minimal genomic regions with the most prevalent and highest-level copy number alterations (recurrent CNAs). Within a region of recurrent CNA, comparison of expression levels in tumors with a given CNA to tumors lacking that CNA and to whole normal ovary samples was used to select genes with CNA-specific expression patterns. A public expression array data set of laser capture micro-dissected (LCM) non-malignant fallopian tube epithelia and LCM ovarian serous adenocarcinoma was used to evaluate the effect of cell-type mixture biases. Results Fourteen recurrent deletions were detected on chromosomes 4, 6, 9, 12, 13, 15, 16, 17, 18, 22 and most prevalently on X and 8. Copy number and expression data suggest several apoptosis mediators as candidate drivers of the 8p deletions. Sixteen recurrent gains were identified on chromosomes 1, 2, 3, 5, 8, 10, 12, 15, 17, 19, and 20, with the most prevalent gains localized to 8q and 3q. Within the 8q amplicon, PVT1, but not MYC, was strongly over-expressed relative to tumors lacking this CNA and showed over-expression relative to normal ovary. Likewise, the cell polarity regulators PRKCI and ECT2 were identified as putative drivers of two distinct amplicons on 3q. Co-occurrence analyses suggested potential synergistic or antagonistic relationships between recurrent CNAs. Genes within regions of recurrent CNA showed an enrichment of Cancer Census genes, particularly when filtered for CNA-specific expression. Conclusion These analyses provide detailed views of ovarian cancer genomic changes and highlight the benefits of using multiple reference sample types for the evaluation of CNA-specific expression changes

  13. DNA copy-number alterations underlie gene expression differences between microsatellite stable and unstable colorectal cancers

    PubMed Central

    Jorissen, Robert N.; Lipton, Lara; Gibbs, Peter; Chapman, Matthew; Desai, Jayesh; Jones, Ian T.; Yeatman, Timothy J.; East, Philip; Tomlinson, Ian P.M.; Verspaget, Hein W.; Aaltonen, Lauri A.; Kruhøffer, Mogens; Ørntoft, Torben F.; Andersen, Claus Lindbjerg; Sieber, Oliver M.

    2008-01-01

    Purpose About 15% of colorectal cancers (CRCs) harbor microsatellite instability (MSI). MSI-associated gene expression changes have been identified in CRCs, but little overlap exists between signatures hindering an assessment of overall consistency. Little is known about the causes and downstream effects of differential gene expression. Experimental Design DNA microarray data on 89 MSI and 140 MSS CRCs from this study, and 58 MSI and 77 MSS cases from three published reports were randomly divided into test and training sets. MSI-associated gene expression changes were assessed for cross-study consistency using training samples, and validated as MSI classifier using test samples. Differences in biological pathways were identified by functional category analysis. Causation of differential gene expression was investigated by comparison to DNA copy-number data. Results MSI-associated gene expression changes in CRCs were found to be highly consistent across multiple studies of primary tumors and cancer cell lines from patients of different ethnicities (P<0.001). Clustering based on consistent changes separated additional test cases by MSI status, and classification of individual samples predicted MSI status with a sensitivity of 96% and specificity of 85%. Genes associated with immune response were up-regulated in MSI cancers, whereas genes associated with cell-cell adhesion, ion-binding and regulation of metabolism were down-regulated. Differential gene expression was shown to reflect systematic differences in DNA copy-number aberrations between MSI and MSS tumors (P<0.001). Conclusions Our results demonstrate cross-study consistency of MSI-associated gene expression changes in CRCs. DNA copy-number alterations partly cause the differences in gene expression between MSI and MSS cancers. PMID:19088021

  14. Common Spatial Organization of Number and Emotional Expression: A Mental Magnitude Line

    ERIC Educational Resources Information Center

    Holmes, Kevin J.; Lourenco, Stella F.

    2011-01-01

    Converging behavioral and neural evidence suggests that numerical representations are mentally organized in left-to-right orientation. Here we show that this format of spatial organization extends to emotional expression. In Experiment 1, right-side responses became increasingly faster as number (represented by Arabic numerals) or happiness…

  15. Prediction of Shrinkage Pore Volume Fraction Using a Dimensionless Niyama Criterion

    NASA Astrophysics Data System (ADS)

    Carlson, Kent D.; Beckermann, Christoph

    2009-01-01

    A method is presented to use a dimensionless form of the well-known Niyama criterion to directly predict the amount of shrinkage porosity that forms during solidification of metal alloy castings. The main advancement offered by this method is that it avoids the need to know the threshold Niyama value below which shrinkage porosity forms; such threshold values are generally unknown and alloy dependent. The dimensionless criterion accounts for both the local thermal conditions (as in the original Niyama criterion) and the properties and solidification characteristics of the alloy. Once a dimensionless Niyama criterion value is obtained from casting simulation results, the corresponding shrinkage pore volume fraction can be determined knowing only the solid fraction-temperature curve and the total solidification shrinkage of the alloy. Curves providing the shrinkage pore volume percentage as a function of the dimensionless Niyama criterion are given for WCB steel, aluminum alloy A356, and magnesium alloy AZ91D. The present method is used in a general-purpose casting simulation software package to predict shrinkage porosity in three-dimensional (3-D) castings. Comparisons between simulated and experimental shrinkage porosity results for a WCB steel plate casting demonstrate that this method can reasonably predict shrinkage. Additional simulations for magnesium alloy AZ91D illustrate that this method is applicable to a wide variety of alloys and casting conditions.

  16. Effect of passage number on cellular response DNA-damaging agents: cell survival and gene expression

    SciTech Connect

    Chang-Liu, Chin-Mei; Wolschak, G.E.

    1996-03-01

    The effect of different passage numbers on plating efficiency, doubling time, cell growth, and radiation sensitivity was assessed in Syrian hamster embryo (SHE) cells. Changes in gene expression after UV or {gamma}-ray irradiation at different passage numbers were also examined. The SHE cells were maintained in culture medium for up to 64 passages. Cells were exposed to {sup 60}Co {gamma} rays or 254-m UV radiation. Differential display of cDNAs and Northern blots were used for the study of gene expression. With increasing passage number, SHE cells demonstrated decreased doubling time, increased plating efficiency, and a decreased yield in the number of cells per plate. Between passages 41 and 48 a ``crisis`` period was evident during which time cell growth in high serum (20%) was no longer optimal, and serum concentrations were reduced (to 10%) to maintain cell growth. Sensitivity to ionizing radiation was no different between early- and intermediate-passage cells. However, after UV exposure at low passages (passage 3), confluent cells were more sensitive to the killing effects of UV than were log-phase cells. At intermediate passages (passages 43, 48), confluent cells were slightly more radioresistant- than were log-phase cells. By passage 64, however, both confluent and log-phase cells showed similar patterns of UV sensitivity. Expression of {gamma}-actin, PCNA, and p53 transcripts did not change following UV exposure. p53 mRNA was induced following {gamma}-ray exposure of the intermediate (passage 45) epithelial cells. Differential display, however, revealed changes in expression of several transcripts following exposure to ionizing and ultraviolet radiations. The observed differences in radiation sensitivity associated with increasing passage number may be influenced by radiation-induced gene expression. We are conducting experiments to identify these genes.

  17. Integration of DNA Copy Number Alterations and Transcriptional Expression Analysis in Human Gastric Cancer

    PubMed Central

    Coral, Ho; Yuen, Siu Tsan; Chu, Kent Man; Law, Simon; Zhang, Lianhai; Ji, Jiafu; Leung, Suet Yi; Chen, Xin

    2012-01-01

    Background Genomic instability with frequent DNA copy number alterations is one of the key hallmarks of carcinogenesis. The chromosomal regions with frequent DNA copy number gain and loss in human gastric cancer are still poorly defined. It remains unknown how the DNA copy number variations contributes to the changes of gene expression profiles, especially on the global level. Principal Findings We analyzed DNA copy number alterations in 64 human gastric cancer samples and 8 gastric cancer cell lines using bacterial artificial chromosome (BAC) arrays based comparative genomic hybridization (aCGH). Statistical analysis was applied to correlate previously published gene expression data obtained from cDNA microarrays with corresponding DNA copy number variation data to identify candidate oncogenes and tumor suppressor genes. We found that gastric cancer samples showed recurrent DNA copy number variations, including gains at 5p, 8q, 20p, 20q, and losses at 4q, 9p, 18q, 21q. The most frequent regions of amplification were 20q12 (7/72), 20q12–20q13.1 (12/72), 20q13.1–20q13.2 (11/72) and 20q13.2–20q13.3 (6/72). The most frequent deleted region was 9p21 (8/72). Correlating gene expression array data with aCGH identified 321 candidate oncogenes, which were overexpressed and showed frequent DNA copy number gains; and 12 candidate tumor suppressor genes which were down-regulated and showed frequent DNA copy number losses in human gastric cancers. Three networks of significantly expressed genes in gastric cancer samples were identified by ingenuity pathway analysis. Conclusions This study provides insight into DNA copy number variations and their contribution to altered gene expression profiles during human gastric cancer development. It provides novel candidate driver oncogenes or tumor suppressor genes for human gastric cancer, useful pathway maps for the future understanding of the molecular pathogenesis of this malignancy, and the construction of new therapeutic

  18. Copy number variations of 11 macronuclear chromosomes and their gene expression in Oxytricha trifallax.

    PubMed

    Xu, Ke; Doak, Thomas G; Lipps, Hans J; Wang, Jingmei; Swart, Estienne C; Chang, Wei-Jen

    2012-08-15

    Ciliated protozoa are peculiar for their nuclear dimorphism, wherein two types of nuclei divide nuclear functions: a germline micronucleus (MIC) is transcriptionally inert during vegetative growth, but serves as the genetic blueprint for the somatic macronucleus (MAC), which is responsible for all transcripts supporting cell growth and reproduction. While all the advantages/disadvantages associated with nuclear dimorphism are not clear, an essential advantage seems to be the ability to produce a highly polyploid MAC, which then allows for the maintenance of extremely large single cells - many ciliate cells are larger than small metazoa. In some ciliate classes, chromosomes in the MAC are extensively fragmented to create extremely short chromosomes that often carry single genes, and these chromosomes may be present in different copy numbers, resulting in different ploidies. While using gene copy number to regulate gene expression is limited in most eukaryotic systems, the extensive fragmentation in some ciliate classes provides this opportunity to every MAC gene. However, it is still unclear if this mechanism is in fact used extensively in these ciliates. To address this, we have quantified copy numbers of 11 MAC chromosomes and their gene expression in Oxytricha trifallax (CI: Spirotrichea). We compared copy numbers between two subpopulations of O. trifallax, and copy numbers of 7 orthologous genes between O. trifallax and the closely related Stylonychia lemnae. We show that copy numbers of MAC chromosomes are variable, dynamic, and positively correlated to gene expression. These features might be conserved in all spirotrichs, and might exist in other classes of ciliates with heavily fragmented MAC chromosomes.

  19. Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome

    PubMed Central

    2010-01-01

    Background Macrosatellites are some of the largest variable number tandem repeats in the human genome, but what role these unusual sequences perform is unknown. Their importance to human health is clearly demonstrated by the 4q35 macrosatellite D4Z4 that is associated with the onset of the muscle degenerative disease facioscapulohumeral muscular dystrophy. Nevertheless, many other macrosatellite arrays in the human genome remain poorly characterized. Results Here we describe the organization, tandem repeat copy number variation, transmission stability and expression of four macrosatellite arrays in the human genome: the TAF11-Like array located on chromosomes 5p15.1, the SST1 arrays on 4q28.3 and 19q13.12, the PRR20 array located on chromosome 13q21.1, and the ZAV array at 9q32. All are polymorphic macrosatellite arrays that at least for TAF11-Like and SST1 show evidence of meiotic instability. With the exception of the SST1 array that is ubiquitously expressed, all are expressed at high levels in the testis and to a lesser extent in the brain. Conclusions Our results extend the number of characterized macrosatellite arrays in the human genome and provide the foundation for formulation of hypotheses to begin assessing their functional role in the human genome. PMID:21078170

  20. On dimensionless parameters for generalization pressure head and flow rate characteristics of centrifugal disk pumps

    NASA Astrophysics Data System (ADS)

    Naumov, I. E.; Prikhodko, Yu. M.; Chekhov, V. P.; Fomichev, V. P.

    2012-03-01

    Experimental study was performed for operation of a centrifugal disk pump at atmospheric air pressure. The dimensionless parameters were developed for generalization of experimental data on flow rate and head of the pump. The method for calculation of a pumping curve and throttling characteristic was offered through use of semiemperical generalization formulas. The method ensures a good accuracy in calculations, which is proved by comparison of calculation and experimental data for the pump tested.

  1. An optimised direct lysis method for gene expression studies on low cell numbers.

    PubMed

    Le, Anh Viet-Phuong; Huang, Dexing; Blick, Tony; Thompson, Erik W; Dobrovic, Alexander

    2015-08-05

    There is increasing interest in gene expression analysis of either single cells or limited numbers of cells. One such application is the analysis of harvested circulating tumour cells (CTCs), which are often present in very low numbers. A highly efficient protocol for RNA extraction, which involves a minimal number of steps to avoid RNA loss, is essential for low input cell numbers. We compared several lysis solutions that enable reverse transcription (RT) to be performed directly on the cell lysate, offering a simple rapid approach to minimise RNA loss for RT. The lysis solutions were assessed by reverse transcription quantitative polymerase chain reaction (RT-qPCR) in low cell numbers isolated from four breast cancer cell lines. We found that a lysis solution containing both the non-ionic detergent (IGEPAL CA-630, chemically equivalent to Nonidet P-40 or NP-40) and bovine serum albumin (BSA) gave the best RT-qPCR yield. This direct lysis to reverse transcription protocol outperformed a column-based extraction method using a commercial kit. This study demonstrates a simple, reliable, time- and cost-effective method that can be widely used in any situation where RNA needs to be prepared from low to very low cell numbers.

  2. From DNA Copy Number to Gene Expression: Local aberrations, Trisomies and Monosomies

    NASA Astrophysics Data System (ADS)

    Shay, Tal

    The goal of my PhD research was to study the effect of DNA copy number changes on gene expression. DNA copy number aberrations may be local, encompassing several genes, or on the level of an entire chromosome, such as trisomy and monosomy. The main dataset I studied was of Glioblastoma, obtained in the framework of a collaboration, but I worked also with public datasets of cancer and Down's Syndrome. The molecular basis of expression changes in Glioblastoma. Glioblastoma is the most common and aggressive type of primary brain tumors in adults. In collaboration with Prof. Hegi (CHUV, Switzerland), we analyzed a rich Glioblastoma dataset including clinical information, DNA copy number (array CGH) and expression profiles. We explored the correlation between DNA copy number and gene expression at the level of chromosomal arms and local genomic aberrations. We detected known amplification and over expression of oncogenes, as well as deletion and down-regulation of tumor suppressor genes. We exploited that information to map alterations of pathways that are known to be disrupted in Glioblastoma, and tried to characterize samples that have no known alteration in any of the studied pathways. Identifying local DNA aberrations of biological significance. Many types of tumors exhibit chromosomal losses or gains and local amplifications and deletions. A region that is aberrant in many tumors, or whose copy number change is stronger, is more likely to be clinically relevant, and not just a by-product of genetic instability. We developed a novel method that defines and prioritizes aberrations by formalizing these intuitions. The method scores each aberration by the fraction of patients harboring it, its length and its amplitude, and assesses the significance of the score by comparing it to a null distribution obtained by permutations. This approach detects genetic locations that are significantly aberrant, generating a 'genomic aberration profile' for each sample. The 'genomic

  3. ALK Gene Copy Number Gain and Immunohistochemical Expression Status Using Three Antibodies in Neuroblastoma.

    PubMed

    Kim, Eun Kyung; Kim, Sewha

    2017-01-01

    Anaplastic lymphoma kinase ( ALK) gene aberrations-such as mutations, amplifications, and copy number gains-represent a major genetic predisposition to neuroblastoma (NB). This study aimed to evaluate the correlation between ALK gene copy number status, ALK protein expression, and clinicopathological parameters. We retrospectively retrieved 30 cases of poorly differentiated NB and constructed tissue microarrays (TMAs). ALK copy number changes were assessed by fluorescence in situ hybridization (FISH) assays, and ALK immunohistochemistry (IHC) testing was performed using three different antibodies (ALK1, D5F3, and 5A4 clones). ALK amplification and copy number gain were observed in 10% (3/30) and 53.3% (16/30) of the cohort, respectively. There were positive correlations between ALK copy number and IHC-positive rate in ALK1 and 5A4 antibodies ( P < 0.001 and P = 0.019, respectively). ALK1, D5F3, and 5A4 antibodies equally showed 100% sensitivity in detecting ALK amplification. However, the sensitivity for detecting copy number gain differed among the three antibodies, with 75% sensitivity in D5F3 and 0% sensitivity in ALK1. ALK-amplified NBs were correlated with synchronous MYCN amplification and chromosome 1p deletion. ALK IHC positivity was frequently observed in INSS stage IV and high-risk group patients. In conclusion, this study identified that an increase in the ALK copy number is a frequent genetic alteration in poorly differentiated NB. ALK-amplified NBs showed consistent ALK IHC positivity with all kinds of antibodies. In contrast, the detection performance of ALK copy number gain was antibody dependent, with the D5F3 antibody showing the best sensitivity.

  4. Generation of Large Numbers of Antigen-Expressing Human Dendritic Cells Using CD14-ML Technology.

    PubMed

    Imamura, Yuya; Haruta, Miwa; Tomita, Yusuke; Matsumura, Keiko; Ikeda, Tokunori; Yuno, Akira; Hirayama, Masatoshi; Nakayama, Hideki; Mizuta, Hiroshi; Nishimura, Yasuharu; Senju, Satoru

    2016-01-01

    We previously reported a method to expand human monocytes through lentivirus-mediated introduction of cMYC and BMI1, and we named the monocyte-derived proliferating cells, CD14-ML. CD14-ML differentiated into functional DC (CD14-ML-DC) upon addition of IL-4, resulting in the generation of a large number of DC. One drawback of this method was the extensive donor-dependent variation in proliferation efficiency. In the current study, we found that introduction of BCL2 or LYL1 along with cMYC and BMI1 was beneficial. Using the improved method, we obtained CD14-ML from all samples, regardless of whether the donors were healthy individuals or cancer patients. In vitro stimulation of peripheral blood T cells with CD14-ML-DC that were loaded with cancer antigen-derived peptides led to the establishment of CD4+ and CD8+ T cell lines that recognized the peptides. Since CD14-ML was propagated for more than 1 month, we could readily conduct genetic modification experiments. To generate CD14-ML-DC that expressed antigenic proteins, we introduced lentiviral antigen-expression vectors and subjected the cells to 2 weeks of culture for drug-selection and expansion. The resulting antigen-expressing CD14-ML-DC successfully induced CD8+ T cell lines that were reactive to CMVpp65 or MART1/MelanA, suggesting an application in vaccination therapy. Thus, this improved method enables the generation of a sufficient number of DC for vaccination therapy from a small amount of peripheral blood from cancer patients. Information on T cell epitopes is not necessary in vaccination with cancer antigen-expressing CD14-ML-DC; therefore, all patients, irrespective of HLA type, will benefit from anti-cancer therapy based on this technology.

  5. Generation of Large Numbers of Antigen-Expressing Human Dendritic Cells Using CD14-ML Technology

    PubMed Central

    Imamura, Yuya; Haruta, Miwa; Tomita, Yusuke; Matsumura, Keiko; Ikeda, Tokunori; Yuno, Akira; Hirayama, Masatoshi; Nakayama, Hideki; Mizuta, Hiroshi; Nishimura, Yasuharu; Senju, Satoru

    2016-01-01

    We previously reported a method to expand human monocytes through lentivirus-mediated introduction of cMYC and BMI1, and we named the monocyte-derived proliferating cells, CD14-ML. CD14-ML differentiated into functional DC (CD14-ML-DC) upon addition of IL-4, resulting in the generation of a large number of DC. One drawback of this method was the extensive donor-dependent variation in proliferation efficiency. In the current study, we found that introduction of BCL2 or LYL1 along with cMYC and BMI1 was beneficial. Using the improved method, we obtained CD14-ML from all samples, regardless of whether the donors were healthy individuals or cancer patients. In vitro stimulation of peripheral blood T cells with CD14-ML-DC that were loaded with cancer antigen-derived peptides led to the establishment of CD4+ and CD8+ T cell lines that recognized the peptides. Since CD14-ML was propagated for more than 1 month, we could readily conduct genetic modification experiments. To generate CD14-ML-DC that expressed antigenic proteins, we introduced lentiviral antigen-expression vectors and subjected the cells to 2 weeks of culture for drug-selection and expansion. The resulting antigen-expressing CD14-ML-DC successfully induced CD8+ T cell lines that were reactive to CMVpp65 or MART1/MelanA, suggesting an application in vaccination therapy. Thus, this improved method enables the generation of a sufficient number of DC for vaccination therapy from a small amount of peripheral blood from cancer patients. Information on T cell epitopes is not necessary in vaccination with cancer antigen-expressing CD14-ML-DC; therefore, all patients, irrespective of HLA type, will benefit from anti-cancer therapy based on this technology. PMID:27050553

  6. Entropy-based cluster validation and estimation of the number of clusters in gene expression data.

    PubMed

    Novoselova, Natalia; Tom, Igor

    2012-10-01

    Many external and internal validity measures have been proposed in order to estimate the number of clusters in gene expression data but as a rule they do not consider the analysis of the stability of the groupings produced by a clustering algorithm. Based on the approach assessing the predictive power or stability of a partitioning, we propose the new measure of cluster validation and the selection procedure to determine the suitable number of clusters. The validity measure is based on the estimation of the "clearness" of the consensus matrix, which is the result of a resampling clustering scheme or consensus clustering. According to the proposed selection procedure the stable clustering result is determined with the reference to the validity measure for the null hypothesis encoding for the absence of clusters. The final number of clusters is selected by analyzing the distance between the validity plots for initial and permutated data sets. We applied the selection procedure to estimate the clustering results on several datasets. As a result the proposed procedure produced an accurate and robust estimate of the number of clusters, which are in agreement with the biological knowledge and gold standards of cluster quality.

  7. Development of small high-copy-number plasmid vectors for gene expression in Caulobacter crescentus.

    PubMed

    Umelo-Njaka, E; Nomellini, J F; Yim, H; Smit, J

    2001-07-01

    Caulobacter crescentus is a bacterium with a distinctive life cycle and so it is studied as a cell development model. In addition, we have adapted this bacterium for recombinant protein production and display based on the crystalline surface protein (S)-layer and its C-terminal secretion signal. We report here the development of small, high-copy-number plasmid vectors and methods for producing an obligate expression host. The vectors are based on a narrow-host-range colE1-replicon-based plasmid commonly used in Escherichia coli, to which was added the replication origin of the IncQ plasmid RSF1010. C. crescentus strains were modified to enable plasmid replication by introduction of the RSF1010 repBAC genes at the recA locus. The small (4.0-4.5 kb) plasmids were in high copy numbers in both C. crescentus and E. coli and amenable to rapid methods for plasmid isolation and DNA sequencing. The method for introducing repBAC is suitable for other C. crescentus strains or any bacterium with an adequately homologous recA gene. Application of the vector for protein expression, based on the type I secretion system of the S-layer protein, when compared to constructs in broad-host-range plasmids, resulted in reduced time and steps required from clone construction to recombinant protein recovery and increased protein yield.

  8. Integrated analysis of copy number variation and genome-wide expression profiling in colorectal cancer tissues.

    PubMed

    Ali Hassan, Nur Zarina; Mokhtar, Norfilza Mohd; Kok Sin, Teow; Mohamed Rose, Isa; Sagap, Ismail; Harun, Roslan; Jamal, Rahman

    2014-01-01

    Integrative analyses of multiple genomic datasets for selected samples can provide better insight into the overall data and can enhance our knowledge of cancer. The objective of this study was to elucidate the association between copy number variation (CNV) and gene expression in colorectal cancer (CRC) samples and their corresponding non-cancerous tissues. Sixty-four paired CRC samples from the same patients were subjected to CNV profiling using the Illumina HumanOmni1-Quad assay, and validation was performed using multiplex ligation probe amplification method. Genome-wide expression profiling was performed on 15 paired samples from the same group of patients using the Affymetrix Human Gene 1.0 ST array. Significant genes obtained from both array results were then overlapped. To identify molecular pathways, the data were mapped to the KEGG database. Whole genome CNV analysis that compared primary tumor and non-cancerous epithelium revealed gains in 1638 genes and losses in 36 genes. Significant gains were mostly found in chromosome 20 at position 20q12 with a frequency of 45.31% in tumor samples. Examples of genes that were associated at this cytoband were PTPRT, EMILIN3 and CHD6. The highest number of losses was detected at chromosome 8, position 8p23.2 with 17.19% occurrence in all tumor samples. Among the genes found at this cytoband were CSMD1 and DLC1. Genome-wide expression profiling showed 709 genes to be up-regulated and 699 genes to be down-regulated in CRC compared to non-cancerous samples. Integration of these two datasets identified 56 overlapping genes, which were located in chromosomes 8, 20 and 22. MLPA confirmed that the CRC samples had the highest gains in chromosome 20 compared to the reference samples. Interpretation of the CNV data in the context of the transcriptome via integrative analyses may provide more in-depth knowledge of the genomic landscape of CRC.

  9. Assessment of contractility in intact ventricular cardiomyocytes using the dimensionless 'Frank-Starling Gain' index.

    PubMed

    Bollensdorff, Christian; Lookin, Oleg; Kohl, Peter

    2011-07-01

    This paper briefly recapitulates the Frank-Starling law of the heart, reviews approaches to establishing diastolic and systolic force-length behaviour in intact isolated cardiomyocytes, and introduces a dimensionless index called 'Frank-Starling Gain', calculated as the ratio of slopes of end-systolic and end-diastolic force-length relations. The benefits and limitations of this index are illustrated on the example of regional differences in Guinea pig intact ventricular cardiomyocyte mechanics. Potential applicability of the Frank-Starling Gain for the comparison of cell contractility changes upon stretch will be discussed in the context of intra- and inter-individual variability of cardiomyocyte properties.

  10. MYC, FBXW7 and TP53 copy number variation and expression in Gastric Cancer

    PubMed Central

    2013-01-01

    Background MYC deregulation is a common event in gastric carcinogenesis, usually as a consequence of gene amplification, chromosomal translocations, or posttranslational mechanisms. FBXW7 is a p53-controlled tumor-suppressor that plays a role in the regulation of cell cycle exit and reentry via MYC degradation. Methods We evaluated MYC, FBXW7, and TP53 copy number, mRNA levels, and protein expression in gastric cancer and paired non-neoplastic specimens from 33 patients and also in gastric adenocarcinoma cell lines. We also determined the invasion potential of the gastric cancer cell lines. Results MYC amplification was observed in 51.5% of gastric tumor samples. Deletion of one copy of FBXW7 and TP53 was observed in 45.5% and 21.2% of gastric tumors, respectively. MYC mRNA expression was significantly higher in tumors than in non-neoplastic samples. FBXW7 and TP53 mRNA expression was markedly lower in tumors than in paired non-neoplastic specimens. Moreover, deregulated MYC and FBXW7 mRNA expression was associated with the presence of lymph node metastasis and tumor stage III-IV. Additionally, MYC immunostaining was more frequently observed in intestinal-type than diffuse-type gastric cancers and was associated with MYC mRNA expression. In vitro studies showed that increased MYC and reduced FBXW7 expression is associated with a more invasive phenotype in gastric cancer cell lines. This result encouraged us to investigate the activity of the gelatinases MMP-2 and MMP-9 in both cell lines. Both gelatinases are synthesized predominantly by stromal cells rather than cancer cells, and it has been proposed that both contribute to cancer progression. We observed a significant increase in MMP-9 activity in ACP02 compared with ACP03 cells. These results confirmed that ACP02 cells have greater invasion capability than ACP03 cells. Conclusion In conclusion, FBXW7 and MYC mRNA may play a role in aggressive biologic behavior of gastric cancer cells and may be a useful

  11. The absence of numbers to express the amount may affect delay discounting with humans.

    PubMed

    Reyes-Huerta, Hugo E; Dos Santos, Cristiano V

    2016-09-01

    Human delay discounting is usually studied with experimental protocols that use symbols to express delay and amount. In order to further understand discounting, we evaluated whether the absence of numbers to represent reward amounts affects discount rate in general, and whether the magnitude effect is generalized to nonsymbolic situations in particular. In Experiment 1, human participants were exposed to a delay-discounting task in which rewards were presented using dots to represent monetary rewards (nonsymbolic); under this condition the magnitude effect did not occur. Nevertheless, the magnitude effect was observed when equivalent reward amounts were presented using numbers (symbolic). Moreover, in estimation tasks, magnitude increments produced underestimation of large amounts. In Experiment 2, participants were exposed only to the nonsymbolic discounting task and were required to estimate reward amounts in each trial. Consistent with Experiment 1, the absence of numbers representing reward amounts produced similar discount rates of small and large rewards. These results suggest that value of nonsymbolic rewards is a nonlinear function of amount and that value attribution depends on perceived difference between the immediate and the delayed nonsymbolic rewards.

  12. Dimensionless analysis of valveless pumping in a thick-wall elastic tube: Application to the tubular embryonic heart.

    PubMed

    Kozlovsky, Pavel; Rosenfeld, Moshe; Jaffa, Ariel J; Elad, David

    2015-06-25

    The physical mechanism that drives blood flow in the valveless tubular embryonic heart is still debatable whether it is peristaltic flow or valveless dynamic suction. Previous studies of valveless pumping were concerned with either the role of the excitation parameters or the mechanisms that generate the unidirectional outflow. In this study, a dimensionless one-dimensional (1D) analysis of the valveless pumping due to local excitation at an asymmetric longitudinal location was performed for non-uniform thick-wall elastic tubes, including tubes with local bulging and tapering. A general tube law that accounts for wall thicknesses was implemented for describing the physically realistic dynamics of the tube and the two-step MacCormack algorithm was utilized for the numerical analysis. A comprehensive analysis was conducted to explore the affecting roles of the system (e.g., tube geometry) and the working (e.g., Strouhal number and flow friction parameter) parameters on the net outflow of the pump. The maximal positive net outflow in all the tested cases always occurred when the natural Strouhal number was about π. Flow reversals were observed only for relatively low friction parameters. A local bulging at the site of excitation and thick walls contributed to larger outflows, while tube tapering reduced the net outflow.

  13. A Numerical Investigation to Identify Dimensionless Parameters for Dual-Rotor Horizontal Axis Wind Turbines

    NASA Astrophysics Data System (ADS)

    Slew, K. Lee; Miller, M.; Matida, E.

    2016-09-01

    A numerical study was carried out to identify non-dimensional parameters for dual-rotor horizontal axis wind turbines (DRWTs). Based on some important DRWT parameters such as the rotor speeds, rotor diameters and the distance between the rotors, three dimensionless parameters were derived from the Buckingham Pi theorem. Hypothetical DRWT models were created using geometrically-scaled National Renewable Energy Laboratory (NREL) Phase VI rotor geometry and operating conditions in order to confirm the validity of these parameters. The performance of each turbine was simulated using DR_HAWT, an inhouse prediction tool for single and dual-rotor wind turbines created by the current authors. The variation in normalized output power as a function of the dimensionless parameters suggests that an improved performance of DRWTs can be obtained at lower diameter and gap ratios. The NREL Phase VI rotor equipped with a 5 m geometrically-scaled upwind rotor can generate about 88% of the combined power output of two equivalent single-rotors. In addition, the effect of having an auxiliary upwind rotor reduces the angle of attack along the inboard section of the downwind blade.

  14. Dimensionless factors for an alternating-current non-thermal arc plasma

    NASA Astrophysics Data System (ADS)

    Zhang, Si-Yuan; Li, Xiao-Song; Liu, Jin-Bao; Liu, Jing-Lin; Li, He-Ping; Zhu, Ai-Min

    2016-12-01

    A gliding arc discharge, as a source of warm plasma combining advantages of both thermal and cold plasmas, would have promising application prospects in the fields of fuel conversion, combustion enhancement, material synthesis, surface modifications, pollution control, etc. In order to gain insight into the features of an alternating-current gliding arc discharge plasma, three dimensionless factors, i.e., the extinction span (ψ), current lag (δ), and heating lag (χ) factors are proposed in this letter based on the measured waveforms of the discharge voltage and current in an AC gliding arc discharge plasma. The influences of the driving frequency of the power supply (f) on these three dimensionless parameters are investigated experimentally with the explanations on the physical meanings of these factors. The experimental results show that a higher value of f would lead to the lower values of ψ and δ, as well as a higher value of χ. These experimental phenomena indicate a lower threshold ignition voltage of the discharges, a lower current-growth inertia of the gliding arcs and a larger relative thermal inertia of the plasmas with increase the driving frequency of the power supply in the operating parameter range studied in this letter.

  15. Dimensionless, Scale Invariant, Edge Weight Metric for the Study of Complex Structural Networks

    PubMed Central

    Colon-Perez, Luis M.; Spindler, Caitlin; Goicochea, Shelby; Triplett, William; Parekh, Mansi; Montie, Eric; Carney, Paul R.; Price, Catherine; Mareci, Thomas H.

    2015-01-01

    High spatial and angular resolution diffusion weighted imaging (DWI) with network analysis provides a unique framework for the study of brain structure in vivo. DWI-derived brain connectivity patterns are best characterized with graph theory using an edge weight to quantify the strength of white matter connections between gray matter nodes. Here a dimensionless, scale-invariant edge weight is introduced to measure node connectivity. This edge weight metric provides reasonable and consistent values over any size scale (e.g. rodents to humans) used to quantify the strength of connection. Firstly, simulations were used to assess the effects of tractography seed point density and random errors in the estimated fiber orientations; with sufficient signal-to-noise ratio (SNR), edge weight estimates improve as the seed density increases. Secondly to evaluate the application of the edge weight in the human brain, ten repeated measures of DWI in the same healthy human subject were analyzed. Mean edge weight values within the cingulum and corpus callosum were consistent and showed low variability. Thirdly, using excised rat brains to study the effects of spatial resolution, the weight of edges connecting major structures in the temporal lobe were used to characterize connectivity in this local network. The results indicate that with adequate resolution and SNR, connections between network nodes are characterized well by this edge weight metric. Therefore this new dimensionless, scale-invariant edge weight metric provides a robust measure of network connectivity that can be applied in any size regime. PMID:26173147

  16. Multi-objective optimization and design for free piston Stirling engines based on the dimensionless power

    NASA Astrophysics Data System (ADS)

    Mou, Jian; Hong, Guotong

    2017-02-01

    In this paper, the dimensionless power is used to optimize the free piston Stirling engines (FPSE). The dimensionless power is defined as a ratio of the heat power loss and the output work. The heat power losses include the losses of expansion space, heater, regenerator, cooler and the compression space and every kind of the heat loss calculated by empirical formula. The output work is calculated by the adiabatic model. The results show that 82.66% of the losses come from the expansion space and 54.59% heat losses of expansion space come from the shuttle loss. At different pressure the optimum bore-stroke ratio, heat source temperature, phase angle and the frequency have different values, the optimum phase angles increase with the increase of pressure, but optimum frequencies drop with the increase of pressure. However, no matter what the heat source temperature, initial pressure and frequency are, the optimum ratios of piston stroke and displacer stroke all about 0.8. The three-dimensional diagram is used to analyse Stirling engine. From the three-dimensional diagram the optimum phase angle, frequency and heat source temperature can be acquired at the same time. This study offers some guides for the design and optimization of FPSEs.

  17. Comparative analysis of animal growth: a primate continuum revealed by a new dimensionless growth rate coefficient.

    PubMed

    Vinicius, Lucio; Mumby, Hannah S

    2013-05-01

    The comparative analysis of animal growth still awaits full integration into life-history studies, partially due to the difficulty of defining a comparable measure of growth rate across species. Using growth data from 50 primate species, we introduce a modified "general growth model" and a dimensionless growth rate coefficient β that controls for size scaling and phylogenetic effects in the distribution of growth rates. Our results contradict the prevailing idea that slow growth characterizes primates as a group: the observed range of β values shows that not all primates grow slowly, with galago species exhibiting growth rates similar or above the mammalian average, while other strepsirrhines and most New World monkeys show limited reduction in growth rates. Low growth rate characterizes apes and some papionines. Phylogenetic regressions reveal associations between β and life-history variables, providing tests for theories of primate growth evolution. We also show that primate slow growth is an exclusively postnatal phenomenon. Our study exemplifies how the dimensionless approach promotes the integration of growth rate data into comparative life-history analysis, and demonstrates its potential applicability to other cases of adaptive diversification of animal growth patterns.

  18. Host Genetic Variants and Gene Expression Patterns Associated with Epstein-Barr Virus Copy Number in Lymphoblastoid Cell Lines

    PubMed Central

    Houldcroft, Charlotte J.; Petrova, Velislava; Liu, Jimmy Z.; Frampton, Dan; Anderson, Carl A.; Gall, Astrid; Kellam, Paul

    2014-01-01

    Lymphoblastoid cell lines (LCLs) are commonly used in molecular genetics, supplying DNA for the HapMap and 1000 Genomes Projects, used to test chemotherapeutic agents, and informing the basis of a number of population genetics studies of gene expression. The process of transforming human B cells into LCLs requires the presence of Epstein-Barr virus (EBV), a double-stranded DNA virus which through B-cell immortalisation maintains an episomal virus genome in every cell of an LCL at variable copy numbers. Previous studies have reported that EBV alters host-gene expression and EBV copy number may be under host genetic control. We performed a genome-wide association study of EBV genome copy number in LCLs and found the phenotype to be highly heritable, although no individual SNPs achieved a significant association with EBV copy number. The expression of two host genes (CXCL16 and AGL) was positively correlated and expression of ADARB2 was negatively correlated with EBV copy number in a genotype-independent manner. This study shows an association between EBV copy number and the gene expression profile of LCLs, and suggests that EBV copy number should be considered as a covariate in future studies of host gene expression in LCLs. PMID:25290448

  19. Number of X-chromosome genes influences social behavior and vasopressin gene expression in mice.

    PubMed

    Cox, Kimberly H; Quinnies, Kayla M; Eschendroeder, Alex; Didrick, Paula M; Eugster, Erica A; Rissman, Emilie F

    2015-01-01

    Sex differences in behavior are widespread and often caused by hormonal differences between the sexes. In addition to hormones, the composition and numbers of the sex chromosomes also affect a variety of sex differences. In humans, X-chromosome genes are implicated in neurobehavioral disorders (i.e. fragile-X, autism). To investigate the role of X-chromosome genes in social behavior, we used a mouse model that has atypical sex chromosome configurations resembling Turner (45, XO) and Klinefelter syndromes (47, XXY). We examined a number of behaviors in juvenile mice. Mice with only one copy of most X-chromosome genes, regardless of gonadal sex, were less social in dyadic interaction and social preference tasks. In the elevated plus maze, mice with one X-chromosome spent less time in the distal ends of the open arms as compared to mice with two copies of X-chromosome genes. Using qRTPCR, we noted that amygdala from female mice with one X-chromosome had higher expression levels of vasopressin (Avp) as compared to mice in the other groups. Finally, in plasma from girls with Turner syndrome we detected reduced vasopressin (AVP) concentrations as compared to control patients. These novel findings link sex chromosome genes with social behavior via concentrations of AVP in brain, adding to our understanding of sex differences in neurobehavioral disorders.

  20. Mode tuning of a simplified string instrument using time-dimensionless state-derivative control

    NASA Astrophysics Data System (ADS)

    Benacchio, Simon; Chomette, Baptiste; Mamou-Mani, Adrien; Finel, Victor

    2015-01-01

    In recent years, there has been a growing interest in smart structures, particularly in the field of musical acoustics. Control methods, initially developed to reduce vibration and damage, can be a good way to shift modal parameters of a structure in order to modify its dynamic response. This study focuses on smart musical instruments and aims to modify their radiated sound. This is achieved by controlling the modal parameters of the soundboard of a simplified string instrument. A method combining a pole placement algorithm and a time-dimensionless state-derivative control is used and quickly compared to a usual state control method. Then the effect of the mode tuning on the coupling between the string and the soundboard is experimentally studied. Controlling two vibration modes of the soundboard, its acoustic response and the damping of the third partial of the sound are modified. Finally these effects are listened in the radiated sound.

  1. Genes and small RNA transcripts exhibit dosage-dependent expression pattern in maize copy-number alterations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Copy-number alterations are widespread in animal and plant genomes, but their immediate impact on gene expression is still unclear. In animals, copy-number alterations usually exhibit dosage effects, except for sex chromosomes that tend to be dosage compensated. In plants, genes within small duplica...

  2. Histone Deacetylase Inhibitors Reduce the Number of Herpes Simplex Virus-1 Genomes Initiating Expression in Individual Cells

    PubMed Central

    Shapira, Lev; Ralph, Maya; Tomer, Enosh; Cohen, Shai; Kobiler, Oren

    2016-01-01

    Although many viral particles can enter a single cell, the number of viral genomes per cell that establish infection is limited. However, mechanisms underlying this restriction were not explored in depth. For herpesviruses, one of the possible mechanisms suggested is chromatinization and silencing of the incoming genomes. To test this hypothesis, we followed infection with three herpes simplex virus 1 (HSV-1) fluorescence expressing recombinants in the presence or absence of histone deacetylases inhibitors (HDACi’s). Unexpectedly, a lower number of viral genomes initiated expression in the presence of these inhibitors. This phenomenon was observed using several HDACi: Trichostatin A (TSA), Suberohydroxamic Acid, Valporic Acid, and Suberoylanilide Hydroxamic Acid. We found that HDACi presence did not change the progeny outcome from the infected cells but did alter the kinetic of the gene expression from the viral genomes. Different cell types (HFF, Vero, and U2OS), which vary in their capability to activate intrinsic and innate immunity, show a cell specific basal average number of viral genomes establishing infection. Importantly, in all cell types, treatment with TSA reduced the number of viral genomes. ND10 nuclear bodies are known to interact with the incoming herpes genomes and repress viral replication. The viral immediate early protein, ICP0, is known to disassemble the ND10 bodies and to induce degradation of some of the host proteins in these domains. HDACi treated cells expressed higher levels of some of the host ND10 proteins (promyelocytic leukemia and ATRX), which may explain the lower number of viral genomes initiating expression per cell. Corroborating this hypothesis, infection with three HSV-1 recombinants carrying a deletion in the gene coding for ICP0, show a reduction in the number of genomes being expressed in U2OS cells. We suggest that alterations in the levels of host proteins involved in intrinsic antiviral defense may result in

  3. Effects of copy number variable regions on local gene expression in white blood cells of Mexican Americans

    PubMed Central

    Blackburn, August; Almeida, Marcio; Dean, Angela; Curran, Joanne E; Johnson, Matthew P; Moses, Eric K; Abraham, Lawrence J; Carless, Melanie A; Dyer, Thomas D; Kumar, Satish; Almasy, Laura; Mahaney, Michael C; Comuzzie, Anthony; Williams-Blangero, Sarah; Blangero, John; Lehman, Donna M; Göring, Harald H H

    2015-01-01

    Only few systematic studies on the contribution of copy number variation to gene expression variation have been published to date. Here we identify effects of copy number variable regions (CNVRs) on nearby gene expression by investigating 909 CNVRs and expression levels of 12059 nearby genes in white blood cells from Mexican-American participants of the San Antonio Family Heart Study. We empirically evaluate our ability to detect the contribution of CNVs to proximal gene expression (presumably in cis) at various window sizes (up to a 10 Mb distance) between the gene and CNV. We found a ~1-Mb window size to be optimal for capturing cis effects of CNVs. Up to 10% of the CNVs in this study were found to be significantly associated with the expression of at least one gene within their vicinity. As expected, we find that CNVs that directly overlap gene sequences have the largest effects on gene expression (compared with non-overlapping CNVRs located nearby), with positive correlation (except for a few exceptions) between estimated genomic dosage and expression level. We find that genes whose expression level is significantly influenced by nearby CNVRs are enriched for immunity and autoimmunity related genes. These findings add to the currently limited catalog of CNVRs that are recognized as expression quantitative trait loci, and have implications for future study designs as well as for prioritizing candidate causal variants in genomic regions associated with disease. PMID:25585699

  4. On hydrologic similarity: A dimensionless flood frequency model using a generalized geomorphologic unit hydrograph and partial area runoff generation

    NASA Technical Reports Server (NTRS)

    Sivapalan, Murugesu; Wood, Eric F.; Beven, Keith J.

    1993-01-01

    One of the shortcomings of the original theory of the geomorphologic unit hydrograph (GUH) is that it assumes that runoff is generated uniformly from the entire catchment area. It is now recognized that in many catchments much of the runoff during storm events is produced on partial areas which usually form on narrow bands along the stream network. A storm response model that includes runoff generation on partial areas by both Hortonian and Dunne mechanisms was recently developed by the authors. In this paper a methodology for integrating this partial area runoff generation model with the GUH-based runoff routing model is presented; this leads to a generalized GUH. The generalized GUH and the storm response model are then used to estimate physically based flood frequency distributions. In most previous work the initial moisture state of the catchment had been assumed to be constant for all the storms. In this paper we relax this assumption and allow the initial moisture conditions to vary between storms. The resulting flood frequency distributions are cast in a scaled dimensionless framework where issues such as catchment scale and similarity can be conveniently addressed. A number of experiments are performed to study the sensitivity of the flood frequency response to some of the 'similarity' parameters identified in this formulation. The results indicate that one of the most important components of the derived flood frequency model relates to the specification of processes within the runoff generation model; specifically the inclusion of both saturation excess and Horton infiltration excess runoff production mechanisms. The dominance of these mechanisms over different return periods of the flood frequency distribution can significantly affect the distributional shape and confidence limits about the distribution. Comparisons with observed flood distributions seem to indicate that such mixed runoff production mechanisms influence flood distribution shape. The

  5. Influence of starch steeping period on dimensionless disintegration values of a paracetamol tablet formulation.

    PubMed

    Alebiowu, Gbenga; Adeyemi, Ayoade O

    2009-01-01

    In this study, tapioca starches obtained after different steeping periods, i.e. TS 24, TS 48 and TS 72, were used as disintegrants with corn starch BP as the standard disintegrant in a paracetamol tablet formulation. Two dimensionless disintegration quantities, T(N) and T(C) were used in the determination of the influence that steeping period of starch disintegrant would have on the crushing strength friability-disintegration time ratio (CSFR/DT). These quantities were used to assess the influence of steeping period, relative density and disintegrant concentration on CSFR/DT as well as to compare disintegrant efficiency. The results suggest that the CSFR/DT is more dependent on the disintegrant concentration than on steeping period and relative density. The study further showed that TS 72 is a more reliable disintegrant because its activity would not be influenced by changes in relative density of tablets. This work concludes that the T(N) would be more useful for quantitative assessment while T(C) is more relevant for qualitative assessment.

  6. A dimensionless analysis of a 2DOF piezoelectric vibration energy harvester

    NASA Astrophysics Data System (ADS)

    Xiao, Han; Wang, Xu; John, Sabu

    2015-06-01

    In this study, a dimensionless analysis method is proposed to predict the output voltage and harvested power for a 2DOF vibration energy harvesting system. This method allows us to compare the harvesting power and efficiency of the 2DOF vibration energy harvesting system and to evaluate the harvesting system performance regardless the sizes or scales. The analysis method is a hybrid of time domain simulation and frequency response analysis approaches, which would be a useful tool for parametric study, design and optimisation of a 2DOF piezoelectric vibration energy harvester. In a case study, a quarter car suspension model with a piezoelectric material insert is chosen to be studied. The 2DOF vibration energy harvesting system could potentially be applied in a vehicle to convert waste or harmful ambient vibration energy into electrical energy for charging the battery. Especially for its application in a hybrid vehicle or an electrical vehicle, the 2DOF vibration energy harvesting system could improve charge mileage, comfort and reliability.

  7. Optimization of Dimensionless Figure of Merit in Oxide Thin Film Thermoelectrics

    NASA Astrophysics Data System (ADS)

    Osborne, Daniel; Huxtable, Scott; Tiwari, Ashutosh; Abiade, Jeremiah

    2010-03-01

    The ability of uniquely functional thermoelectric materials to convert waste heat directly into electricity is critical considering the global energy economy. Profitable, energy-efficient thermoelectrics possess thermoelectric figures of merit ZT >= 1. We examined the effect of metal nanoparticle -- oxide film interfaces on the thermal conductivity κ and Seebeck coefficient S in bilayer and multilayer thin film oxide thermoelectrics in an effort to improve the dimensionless figure of merit ZT. Since a thermoelectric's figure of merit ZT is directly proportional to S/κ, reducing κ and increasing S are key strategies to optimize ZT. We reduced κ by phonon scattering due to the inclusion of metal nanoparticles in the bulk of the thermoelectric thin film, and increased S due to energy-dependent electron scattering at the metal - oxide interfaces. Doped strontium titanate (STO) thin film/Au nanoparticle composites were synthesized by alternate ablation of Au and Nb-doped STO targets during pulsed laser deposition. Characterization of the thermoelectric films involve XRD, XPS, and TEM analyses, Seebeck coefficient measurements, and also measurements of the thermal conductivity via time-domain thermoreflectance. The measured thermal conductivities and Seebeck coefficients of the thin films shows a strong dependence on the nanoscale interfaces of the films.

  8. Dimensionless Model of a Thermoelectric Cooling Device Operating at Real Heat Transfer Conditions: Maximum Cooling Capacity Mode

    NASA Astrophysics Data System (ADS)

    Melnikov, A. A.; Kostishin, V. G.; Alenkov, V. V.

    2016-09-01

    Real operating conditions of a thermoelectric cooling device are in the presence of thermal resistances between thermoelectric material and a heat medium or cooling object. They limit performance of a device and should be considered when modeling. Here we propose a dimensionless mathematical steady state model, which takes them into account. Analytical equations for dimensionless cooling capacity, voltage, and coefficient of performance (COP) depending on dimensionless current are given. For improved accuracy a device can be modeled with use of numerical or combined analytical-numerical methods. The results of modeling are in acceptable accordance with experimental results. The case of zero temperature difference between hot and cold heat mediums at which the maximum cooling capacity mode appears is considered in detail. Optimal device parameters for maximal cooling capacity, such as fraction of thermal conductance on the cold side y, fraction of current relative to maximal j' are estimated in range of 0.38-0.44 and 0.48-0.95, respectively, for dimensionless conductance K' = 5-100. Also, a method for determination of thermal resistances of a thermoelectric cooling system is proposed.

  9. Integration of mRNA expression profile, copy number alterations, and microRNA expression levels in breast cancer to improve grade definition.

    PubMed

    Cava, Claudia; Bertoli, Gloria; Ripamonti, Marilena; Mauri, Giancarlo; Zoppis, Italo; Della Rosa, Pasquale Anthony; Gilardi, Maria Carla; Castiglioni, Isabella

    2014-01-01

    Defining the aggressiveness and growth rate of a malignant cell population is a key step in the clinical approach to treating tumor disease. The correct grading of breast cancer (BC) is a fundamental part in determining the appropriate treatment. Biological variables can make it difficult to elucidate the mechanisms underlying BC development. To identify potential markers that can be used for BC classification, we analyzed mRNAs expression profiles, gene copy numbers, microRNAs expression and their association with tumor grade in BC microarray-derived datasets. From mRNA expression results, we found that grade 2 BC is most likely a mixture of grade 1 and grade 3 that have been misclassified, being described by the gene signature of either grade 1 or grade 3. We assessed the potential of the new approach of integrating mRNA expression profile, copy number alterations, and microRNA expression levels to select a limited number of genomic BC biomarkers. The combination of mRNA profile analysis and copy number data with microRNA expression levels led to the identification of two gene signatures of 42 and 4 altered genes (FOXM1, KPNA4, H2AFV and DDX19A) respectively, the latter obtained through a meta-analytical procedure. The 42-based gene signature identifies 4 classes of up- or down-regulated microRNAs (17 microRNAs) and of their 17 target mRNA, and the 4-based genes signature identified 4 microRNAs (Hsa-miR-320d, Hsa-miR-139-5p, Hsa-miR-567 and Hsa-let-7c). These results are discussed from a biological point of view with respect to pathological features of BC. Our identified mRNAs and microRNAs were validated as prognostic factors of BC disease progression, and could potentially facilitate the implementation of assays for laboratory validation, due to their reduced number.

  10. Integrative analysis of copy number and transcriptional expression profiles in esophageal cancer to identify a novel driver gene for therapy

    PubMed Central

    Dong, Gaochao; Mao, Qixing; Yu, Decai; Zhang, Yi; Qiu, Mantang; Dong, Gaoyue; Chen, Qiang; Xia, Wenjie; Wang, Jie; Xu, Lin; Jiang, Feng

    2017-01-01

    An increasing amount of evidence has highlighted the critical roles that copy number variants play in cancer progression. Here, we systematically analyzed the copy number alterations and differentially transcribed genes. Integrative analysis of the association between copy number variants and differential gene expression suggested that copy number variants will lead to aberrant expression of the corresponding genes. We performed a KEGG pathway and GO analysis, which revealed that cell cycle may have an effective role in the progression of esophageal cancer. FAM60A was then screened out as a potential prognostic factor through survival analysis and correlation analysis with clinical-pathological parameters. We subsequently showed that silencing of FAM60A could inhibit esophageal carcinoma tumor cell growth, migration and invasion in vitro. Through the bioinformatic analysis, we predict that FAM60A may act as a transcriptional factor to regulate genes that are correlated with each cell cycle. In summary, we comprehensively analyzed copy number segments and transcriptional expression profiles, which provided a novel approach to identify clinical biomarkers and therapeutic targets of esophageal carcinoma. PMID:28169357

  11. Photosphere Emission from a Hybrid Relativistic Outflow with Arbitrary Dimensionless Entropy and Magnetization in GRBs

    NASA Astrophysics Data System (ADS)

    Gao, He; Zhang, Bing

    2015-03-01

    In view of the recent Fermi observations of gamma-ray burst (GRB) prompt emission spectra, we develop a theory of photosphere emission of a hybrid relativistic outflow with a hot fireball component (defined by dimensionless entropy η) and a cold Poynting-flux component (defined by magnetization σ0 at the central engine). We consider the scenarios both without and with sub-photospheric magnetic dissipations. Based on a simplified toy model of jet dynamics, we develop two approaches: a "bottom-up" approach to predict the temperature (for a non-dissipative photosphere) and luminosity of the photosphere emission and its relative brightness for a given pair of (η, σ0) and a "top-down" approach to diagnose central engine parameters (η and σ0) based on the observed quasi-thermal photosphere emission properties. We show that a variety of observed GRB prompt emission spectra with different degrees of photosphere thermal emission can be reproduced by varying η and σ0 within the non-dissipative photosphere scenario. In order to reproduce the observed spectra, the outflows of most GRBs need to have a significant σ, both at the central engine and at the photosphere. The σ value at 1015 cm from the central engine (a possible non-thermal emission site) is usually also greater than unity, so that internal-collision-induced magnetic reconnection and turbulence (ICMART) may be the mechanism to power the non-thermal emission. We apply our top-down approach to GRB 110721A and find that the temporal evolution behavior of its blackbody component can be well interpreted with a time-varying (η, σ0) at the central engine, instead of invoking a varying engine base size r 0 as proposed by previous authors.

  12. A parametric study of wind chill equivalent temperatures by a dimensionless steady-state analysis

    NASA Astrophysics Data System (ADS)

    Shitzer, Avraham

    2006-03-01

    A first order analytical approximation of steady-state heat conduction in a hollow cylinder exchanging heat at its external surface by convection with a cold and windy environment is presented. The model depicts the thermal behavior of certain body elements, e.g., head/face, when exposed to such environments. The results are presented by dimensionless parameters and facilitate the estimation of wind chill equivalent temperatures (WCETs). The effects of several variables on determining WCETs were studied using specific examples, leading to the following generalizations: (1) the conditions assumed for "calm" wind speed appear to be a dominant factor in determining WCET; (2) the effects, on both (skin) surface temperature and on WCET, of a 1°C change in environmental temperature appear to be more pronounced than those of a 1 m/s change in wind speed; (3) similarly, predicted WCETs are more sensitive to the geometrical dimensions assumed for the modeled entity than they are to wind speeds; and (4) tissue thermal conductivity, the angle at which the convective heat transfer coefficient is measured relative to wind direction, and the factor used to establish "effective" wind speeds in the domain occupied by humans relative to reported values, all seem to have relatively small effects on the determination of WCET. These conclusions strongly suggest, among other things, that for any given combination of environmental conditions, wind chill indices may best be presented as ranges rather than as single values. This seems to apply even when worst-case scenarios are considered. Also emphasized is the need for careful and realistic selection of all the parameter values used in the determination of WCETs.

  13. PHOTOSPHERE EMISSION FROM A HYBRID RELATIVISTIC OUTFLOW WITH ARBITRARY DIMENSIONLESS ENTROPY AND MAGNETIZATION IN GRBs

    SciTech Connect

    Gao, He; Zhang, Bing E-mail: zhang@physics.unlv.edu

    2015-03-10

    In view of the recent Fermi observations of gamma-ray burst (GRB) prompt emission spectra, we develop a theory of photosphere emission of a hybrid relativistic outflow with a hot fireball component (defined by dimensionless entropy η) and a cold Poynting-flux component (defined by magnetization σ{sub 0} at the central engine). We consider the scenarios both without and with sub-photospheric magnetic dissipations. Based on a simplified toy model of jet dynamics, we develop two approaches: a 'bottom-up' approach to predict the temperature (for a non-dissipative photosphere) and luminosity of the photosphere emission and its relative brightness for a given pair of (η, σ{sub 0}); and a 'top-down' approach to diagnose central engine parameters (η and σ{sub 0}) based on the observed quasi-thermal photosphere emission properties. We show that a variety of observed GRB prompt emission spectra with different degrees of photosphere thermal emission can be reproduced by varying η and σ{sub 0} within the non-dissipative photosphere scenario. In order to reproduce the observed spectra, the outflows of most GRBs need to have a significant σ, both at the central engine and at the photosphere. The σ value at 10{sup 15} cm from the central engine (a possible non-thermal emission site) is usually also greater than unity, so that internal-collision-induced magnetic reconnection and turbulence (ICMART) may be the mechanism to power the non-thermal emission. We apply our top-down approach to GRB 110721A and find that the temporal evolution behavior of its blackbody component can be well interpreted with a time-varying (η, σ{sub 0}) at the central engine, instead of invoking a varying engine base size r {sub 0} as proposed by previous authors.

  14. The Beta-Binomial Distribution for Estimating the Number of False Rejections in Microarray Gene Expression Studies.

    PubMed

    Hunt, Daniel L; Cheng, Cheng; Pounds, Stanley

    2009-03-15

    In differential expression analysis of microarray data, it is common to assume independence among null hypotheses (and thus gene expression levels). The independence assumption implies that the number of false rejections V follows a binomial distribution and leads to an estimator of the empirical false discovery rate (eFDR). The number of false rejections V is modeled with the beta-binomial distribution. An estimator of the beta-binomial false discovery rate (bbFDR) is then derived. This approach accounts for how the correlation among non-differentially expressed genes influences the distribution of V. Permutations are used to generate the observed values for V under the null hypotheses and a beta-binomial distribution is fit to the values of V. The bbFDR estimator is compared to the eFDR estimator in simulation studies of correlated non-differentially expressed genes and is found to outperform the eFDR for certain scenarios. As an example, this method is also used to perform an analysis that compares the gene expression of soft tissue sarcoma samples to normal tissue samples.

  15. Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics

    NASA Astrophysics Data System (ADS)

    Ronen, Michal; Rosenberg, Revital; Shraiman, Boris I.; Alon, Uri

    2002-08-01

    A basic challenge in systems biology is to understand the dynamical behavior of gene regulation networks. Current approaches aim at determining the network structure based on genomic-scale data. However, the network connectivity alone is not sufficient to define its dynamics; one needs to also specify the kinetic parameters for the regulation reactions. Here, we ask whether effective kinetic parameters can be assigned to a transcriptional network based on expression data. We present a combined experimental and theoretical approach based on accurate high temporal-resolution measurement of promoter activities from living cells by using green fluorescent protein (GFP) reporter plasmids. We present algorithms that use these data to assign effective kinetic parameters within a mathematical model of the network. To demonstrate this, we employ a well defined network, the SOS DNA repair system of Escherichia coli. We find a strikingly detailed temporal program of expression that correlates with the functional role of the SOS genes and is driven by a hierarchy of effective kinetic parameter strengths for the various promoters. The calculated parameters can be used to determine the kinetics of all SOS genes given the expression profile of just one representative, allowing a significant reduction in complexity. The concentration profile of the master SOS transcriptional repressor can be calculated, demonstrating that relative protein levels may be determined from purely transcriptional data. This finding opens the possibility of assigning kinetic parameters to transcriptional networks on a genomic scale.

  16. Effect of passage number on cellular response to DNA-damaging agents: Cell survival and gene expression

    SciTech Connect

    Chang-Liu, C.M.; Woloschak, G.E.

    1997-08-01

    The effect of different passage numbers on plating efficiency, doubling time, cell growth, and radiation sensitivity was assessed in Syrian hamster embryo (SHE) cells. Changes in gene expression after UV or {gamma}-ray irradiation at different passage numbers were also examined. The SHE cells were maintained in culture medium for up to 64 passages. Cells were exposed to {sup 60}Co {gamma} rays or 254-nm UV radiation. Differential display of cDNAs and northern blots were used for the study of gene expression. With increasing passage number, SHE cells demonstrated decreased doubling time, increased plating efficiency, and a decreased yield in the number of cells per plate. Between passages 41 and 48 a crisis period was evident during which time cell growth in high serum was no longer optimal, and serum concentrations were reduced to maintain cell growth. Sensitivity to ionizing radiation was no different between early- and intermediate-passage cells. However, after UV exposure at low passages (passage 3), confluent cells were more sensitive to the killing effects of UV than were log-phase cells. At intermediate passages (passages 43, 48), confluent cells were slightly more radioresistant than were log-phase cells. By passage 64, however, both confluent and log-phase cells showed similar patterns of UV sensitivity. Expression of {gamma}-actin, PCNA, and p53 transcripts did not change following UV exposure. p53 mRNA was induced following {gamma}-ray exposure of the intermediate (passage 45) epithelial cells. The observed differences in radiation sensitivity associated with increasing passage number may be influenced by radiation-induced gene expression. The authors are conducted experiments to identify these genes.

  17. The number of preproghrelin mRNA expressing cells is increased in mice with activity-based anorexia.

    PubMed

    François, Marie; Barde, Swapnali; Achamrah, Najate; Breton, Jonathan; do Rego, Jean-Claude; Coëffier, Moïse; Hökfelt, Tomas; Déchelotte, Pierre; Fetissov, Sergueï O

    2015-06-01

    Plasma levels of ghrelin, an orexigenic peptide, are increased during conditions of chronic starvation, such as in patients with anorexia nervosa. However, it is not known whether such increase can be related to the number of preproghrelin mRNA-expressing cells in the stomach, and if chronic starvation may activate a tentative central ghrelin production. In this work, in situ hybridization technique was used to analyze the presence and number of preproghrelin mRNA-expressing cells in the stomach and the hypothalamus of mice with activity-based anorexia (ABA) induced by the combination of running wheel activity with progressive, during 10 days, feeding-time restriction (FTR) and compared with sedentary FTR, ABA pair-fed (PF) and ad libitum-fed control mice. All food-restricted mice lost more than 20% of body weight. Body weight loss was similar in ABA and PF mice, but it was more pronounced than in FTR mice. Food intake was also lower in ABA than in FTR mice. Preproghrelin mRNA-expressing cells in the stomach were increased proportionally to the body weight loss in all food-restricted groups with the highest number in ABA mice. No preproghrelin mRNA-producing cells were detectable in the hypothalamus of either control or food-restricted mice. Thus, the increased number of gastric preproghrelin mRNA-producing cells during chronic starvation proportionally to the body weight loss and reduced food intake may underlie increased plasma ghrelin. Hyperactivity-induced anorexia appears to further increase the number of preproghrelin mRNA-producing cells in the stomach. No evidence was found for ghrelin expression in the hypothalamus, not even in any of the present experimental models.

  18. Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level.

    PubMed

    Park, Heewon; Niida, Atsushi; Imoto, Seiya; Miyano, Satoru

    2017-02-01

    Driver gene selection is crucial to understand the heterogeneous system of cancer. To identity cancer driver genes, various statistical strategies have been proposed, especially the L1-type regularization methods have drawn a large amount of attention. However, the statistical approaches have been developed purely from algorithmic and statistical point, and the existing studies have applied the statistical approaches to genomic data analysis without consideration of biological knowledge. We consider a statistical strategy incorporating biological knowledge to identify cancer driver gene. The alterations of copy number have been considered to driver cancer pathogenesis processes, and the region of strong interaction of copy number alterations and expression levels was known as a tumor-related symptom. We incorporate the influence of copy number alterations on expression levels to cancer driver gene-selection processes. To quantify the dependence of copy number alterations on expression levels, we consider [Formula: see text] and [Formula: see text] effects of copy number alterations on expression levels of genes, and incorporate the symptom of tumor pathogenesis to gene-selection procedures. We then proposed an interaction-based feature-selection strategy based on the adaptive L1-type regularization and random lasso procedures. The proposed method imposes a large amount of penalty on genes corresponding to a low dependency of the two features, thus the coefficients of the genes are estimated to be small or exactly 0. It implies that the proposed method can provide biologically relevant results in cancer driver gene selection. Monte Carlo simulations and analysis of the Cancer Genome Atlas (TCGA) data show that the proposed strategy is effective for high-dimensional genomic data analysis. Furthermore, the proposed method provides reliable and biologically relevant results for cancer driver gene selection in TCGA data analysis.

  19. Connected Representations of Knowledge: Do Undergraduate Students Relate Algebraic Rational Expressions to Rational Numbers?

    ERIC Educational Resources Information Center

    Yantz. Jennifer

    2013-01-01

    The attainment and retention of later algebra skills in high school has been identified as a factor significantly impacting students' postsecondary success as STEM majors. Researchers maintain that learners develop meaning for algebraic procedures by forming connections to the basic number system properties. In the present study, the connections…

  20. Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapse

    PubMed Central

    Krzeminski, Patryk; Corchete, Luis A.; García, Juan L.; López-Corral, Lucía; Fermiñán, Encarna; García, Eva M.; Martín, Ana A.; Hernández-Rivas, Jesús M.; García-Sanz, Ramón; Miguel, Jesús F. San; Gutiérrez, Norma C.

    2016-01-01

    Multiple myeloma (MM) remains incurable despite the introduction of novel agents, and a relapsing course is observed in most patients. Although the development of genomic technologies has greatly improved our understanding of MM pathogenesis, the mechanisms underlying relapse have been less thoroughly investigated. In this study, an integrative analysis of DNA copy number, DNA methylation and gene expression was conducted in matched diagnosis and relapse samples from MM patients. Overall, the acquisition of abnormalities at relapse was much more frequent than the loss of lesions present at diagnosis, and DNA losses were significantly more frequent in relapse than in diagnosis samples. Interestingly, copy number abnormalities involving more than 100 Mb of DNA at relapse significantly affect the gene expression of these samples, provoking a particular deregulation of the IL-8 pathway. On the other hand, no significant modifications of gene expression were observed in those samples with less than 100 Mb affected by chromosomal changes. Although several statistical approaches were used to identify genes whose abnormal expression at relapse was regulated by methylation, only two genes that were significantly deregulated in relapse samples (SORL1 and GLT1D1) showed a negative correlation between methylation and expression. Further analysis revealed that DNA methylation was involved in regulating SORL1 expression in MM. Finally, relevant changes in gene expression observed in relapse samples, such us downregulation of CD27 and P2RY8, were most likely not preceded by alterations in the corresponding DNA. Taken together, these results suggest that the genomic heterogeneity described at diagnosis remains at relapse. PMID:27811368

  1. Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapse.

    PubMed

    Krzeminski, Patryk; Corchete, Luis A; García, Juan L; López-Corral, Lucía; Fermiñán, Encarna; García, Eva M; Martín, Ana A; Hernández-Rivas, Jesús M; García-Sanz, Ramón; San Miguel, Jesús F; Gutiérrez, Norma C

    2016-12-06

    Multiple myeloma (MM) remains incurable despite the introduction of novel agents, and a relapsing course is observed in most patients. Although the development of genomic technologies has greatly improved our understanding of MM pathogenesis, the mechanisms underlying relapse have been less thoroughly investigated. In this study, an integrative analysis of DNA copy number, DNA methylation and gene expression was conducted in matched diagnosis and relapse samples from MM patients. Overall, the acquisition of abnormalities at relapse was much more frequent than the loss of lesions present at diagnosis, and DNA losses were significantly more frequent in relapse than in diagnosis samples. Interestingly, copy number abnormalities involving more than 100 Mb of DNA at relapse significantly affect the gene expression of these samples, provoking a particular deregulation of the IL-8 pathway. On the other hand, no significant modifications of gene expression were observed in those samples with less than 100 Mb affected by chromosomal changes. Although several statistical approaches were used to identify genes whose abnormal expression at relapse was regulated by methylation, only two genes that were significantly deregulated in relapse samples (SORL1 and GLT1D1) showed a negative correlation between methylation and expression. Further analysis revealed that DNA methylation was involved in regulating SORL1 expression in MM. Finally, relevant changes in gene expression observed in relapse samples, such us downregulation of CD27 and P2RY8, were most likely not preceded by alterations in the corresponding DNA. Taken together, these results suggest that the genomic heterogeneity described at diagnosis remains at relapse.

  2. MET expression and copy number status in clear-cell renal cell carcinoma: prognostic value and potential predictive marker

    PubMed Central

    Macher-Goeppinger, Stephan; Keith, Martina; Endris, Volker; Penzel, Roland; Tagscherer, Katrin E.; Pahernik, Sascha; Hohenfellner, Markus; Gardner, Humphrey; Grüllich, Carsten; Schirmacher, Peter; Roth, Wilfried

    2017-01-01

    Multiple targeted therapy for advanced clear-cell renal cell carcinoma (RCC) has substantially improved patient outcome, but complete remission is uncommon and many tumors eventually develop resistance. Mechanistic, preclinical, and early clinical data highlight c-Met / hepatocyte growth factor receptor as a promising target for RCC therapeutic agents. We have examined MET expression, frequency of MET gene copy gains and MET gene mutation in a large, hospital-based series of renal cell carcinomas with long-term follow-up information. Out of a total of 572 clear-cell RCC, only 17% were negative for MET expression whereas 32% showed high protein levels. High MET expression and MET copy number gains were associated with an aggressive phenotype and an unfavorable patient outcome. Elevated protein levels in absence of gene amplification were not attributed to mutations, based on results of targeted next-generation sequencing. Our data reveal that clear-cell RCC with MET upregulation show an aggressive behavior and MET copy number increase is evident in a substantial percentage of patients with high-grade carcinomas and metastatic disease. Diagnostic assessment of MET expression and amplification may be of predictive value to guide targeted therapy against MET signaling in patients with clear-cell RCC. PMID:27894094

  3. Expression of epithelial-mesenchymal transition-related genes increases with copy number in multiple cancer types

    PubMed Central

    Qu, Hong

    2016-01-01

    Epithelial-mesenchymal transition (EMT) is a cellular process through which epithelial cells transform into mesenchymal cells. EMT-implicated genes initiate and promote cancer metastasis because mesenchymal cells have greater invasive and migration capacities than epithelial cells. In this pan-cancer analysis, we explored the relationship between gene expression changes and copy number variations (CNVs) for EMT-implicated genes. Based on curated 377 EMT-implicated genes from the literature, we identified 212 EMT-implicated genes associated with more frequent copy number gains (CNGs) than copy number losses (CNLs) using data from The Cancer Genome Atlas (TCGA). Then by correlating these CNV data with TCGA gene expression data, we identified 71 EMT-implicated genes with concordant CNGs and gene up-regulation in 20 or more tumor samples. Of those, 14 exhibited such concordance in over 110 tumor samples. These 14 genes were predominantly apoptosis regulators, which may implies that apoptosis is critical during EMT. Moreover, the 71 genes with concordant CNG and up-regulation were largely involved in cellular functions such as phosphorylation cascade signaling. This is the first observation of concordance between CNG and up-regulation of specific genes in hundreds of samples, which may indicate that somatic CNGs activate gene expression by increasing the gene dosage. PMID:27029057

  4. Assessment of the number and expression of P-type H(+)-ATPase genes in tomato.

    PubMed

    Ewing, N N; Bennett, A B

    1994-10-01

    Seven genomic fragments encoding isoforms of tomato (Lycopersicon esculentum) plasma membrane H(+)-ATPase were cloned and characterized. Genomic DNA gel-blot analysis indicated that probes corresponding to LHA1 through LHA7 hybridized to a common set of seven to nine restriction fragments at moderate stringency and to single, distinct fragments at high stringency. RNA gel-blot and polymerase chain reaction (PCR)-based RNA analyses indicated that LHA1, LHA2, and LHA4 transcripts were present in all organs examined (roots, hypocotyls, stems, immature leaves, mature leaves, green fruit, and red ripe fruit). LHA1 mRNA was present at similar abundance in all organs, LHA2 mRNA was most abundant in hypocotyls and leaves, and LHA4 mRNA was most abundant in roots and hypocotyls. RNA gel-blot and RNA-based PCR assays indicated that LHA3, LHA5, LHA6, and LHA7 mRNA was present at very low or nondetectable levels in all organs, suggesting that these genes are either expressed at very low levels or in organs not examined or that they are regulated by hormonal or environmental cues that were not tested. Indoleacetic acid (IAA) treatment of tomato hypocotyl segments resulted in modest changes in abundance of LHA1, LHA2, and LHA4 transcripts, but these changes were not correlated with the time course of IAA-induced growth. In addition, constitutively silent LHA genes were not activated by IAA. These results indicate that at least seven genomic sequences are present in tomato that may encode plasma membrane H(+)-ATPases, at least three of which are expressed relatively abundantly at the mRNA level.

  5. Column Number Density Expressions Through M = 0 and M = 1 Point Source Plumes Along Any Straight Path

    NASA Technical Reports Server (NTRS)

    Woronowicz, Michael

    2016-01-01

    Analytical expressions for column number density (CND) are developed for optical line of sight paths through a variety of steady free molecule point source models including directionally-constrained effusion (Mach number M = 0) and flow from a sonic orifice (M = 1). Sonic orifice solutions are approximate, developed using a fair simulacrum fitted to the free molecule solution. Expressions are also developed for a spherically-symmetric thermal expansion (M = 0). CND solutions are found for the most general paths relative to these sources and briefly explored. It is determined that the maximum CND from a distant location through directed effusion and sonic orifice cases occurs along the path parallel to the source plane that intersects the plume axis. For the effusive case this value is exactly twice the CND found along the ray originating from that point of intersection and extending to infinity along the plume's axis. For sonic plumes this ratio is reduced to about 4/3. For high Mach number cases the maximum CND will be found along the axial centerline path. Keywords: column number density, plume flows, outgassing, free molecule flow.

  6. Chromosome 15q11-13 duplication syndrome brain reveals epigenetic alterations in gene expression not predicted from copy number

    PubMed Central

    Hogart, Amber; Leung, Karen N.; Wang, Nicholas J.; Wu, David J.; Driscoll, Jennette; Vallero, Roxanne O.; Schanen, N. Carolyn

    2008-01-01

    Background Chromosome 15q11-13 contains a cluster of imprinted genes essential for normal mammalian neurodevelopment. Deficiencies in paternal or maternal 15q11-13 alleles result in Prader-Willi or Angelman syndromes, respectively, and maternal duplications lead to a distinct condition that often includes autism. Overexpression of maternally expressed imprinted genes is predicted to cause 15q11-13-associated autism, but a link between gene dosage and expression has not been experimentally determined in brain. Methods Post-mortem brain tissue was obtained from a male with 15q11-13 hexasomy and a female with 15q11-13 tetrasomy. Quantitative RT-PCR was used to measure ten 15q11-13 transcripts in maternal 15q11-13 duplication, Prader-Willi syndrome, and control brain samples. Southern blot, bisulfite sequencing and fluorescence in situ hybridization were used to investigate epigenetic mechanisms of gene regulation. Results Gene expression and DNA methylation correlated with parental gene dosage in the male 15q11-13 duplication sample with severe cognitive impairment and seizures. Strikingly, the female with autism and milder Prader-Willi-like characteristics demonstrated unexpected deficiencies in the paternally expressed transcripts SNRPN, NDN, HBII85, and HBII52 and unchanged levels of maternally expressed UBE3A compared to controls. Paternal expression abnormalities in the female duplication sample were consistent with elevated DNA methylation of the 15q11-13 imprinting control region (ICR). Expression of nonimprinted 15q11-13 GABA receptor subunit genes was significantly reduced specifically in the female 15q11-13 duplication brain without detectable GABRB3 methylation differences. Conclusion Our findings suggest that genetic copy number changes combined with additional genetic or environmental influences on epigenetic mechanisms impact outcome and clinical heterogeneity of 15q11-13 duplication syndromes. PMID:18835857

  7. Copy Number Variation and Differential Expression of a Protective Endogenous Retrovirus in Sheep

    PubMed Central

    Viginier, Barbara; Dolmazon, Christine; Lantier, Isabelle; Lantier, Frédéric; Archer, Fabienne; Leroux, Caroline; Terzian, Christophe

    2012-01-01

    The Jaagsiekte sheep retrovirus exJSRV and its endogenous counterpart enJSRV co-exist in sheep. exJSRV, a betaretrovirus, is the etiological agent of ovine pulmonary adenocarcinoma, and it has been demonstrated in vitro that an enJSRV Gag variant bearing the R-to-W amino acid change at position 21 was able to block exJSRV budding from the cells, providing a potential protective role for the host. In this work, we developed a fast mutation detection assay based on the oligo ligation assay (OLA) that permits the quantification of the relative proportions of the R21 and W21 Gag variants present in individual genomes and in cDNA obtained from normal and exJSRV-induced lung tumors. We have shown that the W21/R21 ratio is variable within and between breeds. We also describe for the first time that putative protecting enJSRV variants were expressed in alveolar type II cells (AECII), the major target of exJSRV. PMID:22911867

  8. Flower-enhanced expression of a nuclear-encoded mitochondrial respiratory protein is associated with changes in mitochondrion number.

    PubMed Central

    Huang, J; Struck, F; Matzinger, D F; Levings, C S

    1994-01-01

    The mitochondrial Rieske iron-sulfur protein is an obligatory component of the respiratory electron transport chain that is encoded by a single-copy gene in mammals and fungi. In contrast, this protein is encoded by a small gene family in dicotyledonous tobacco and monocotyledonous maize. We cloned four cDNAs from tobacco that encode the mitochondrial Rieske iron-sulfur protein. These clones, along with a previously isolated cDNA, represent five independent members of the gene family that can be divided into three subfamilies. All of these genes were derived from the two progenitor species and were expressed in amphidiploid tobacco. The proteins encoded by these five genes are probably functional because they all contain the universally conserved hexyl peptides necessary for the 2Fe-2S cluster formation. The expression of the Rieske protein gene family is differentially regulated; a 6- to 11-fold higher level of steady state transcripts was found in flowers than in leaves, stems, and roots. Members of at least two subfamilies were preferentially expressed in flowers, indicating that they share a common cis-regulatory element(s), which can respond to a flower-specific signal(s). Although approximately 10 times more transcripts occurred in flowers than in leaves, flower and leaf mitochondria contained a similar amount of the Rieske protein. Flowers, however, contained seven times more Rieske proteins than leaves. These results indicated an increase in mitochondrion number in flowers. High-energy demands during anther development might bring about an increase in mitochondrion numbers in flowers and the flower-enhanced expression of the Rieske protein gene family. Our results suggested that nuclear genes encoding mitochondrial respiratory proteins could sense and respond to changes in energy metabolism and/or changes in mitochondrion numbers. PMID:8180500

  9. Integrated Analysis of Genome-Wide Copy Number Alterations and Gene Expression Profiling of Lung Cancer in Xuanwei, China

    PubMed Central

    Zhang, Yanliang; Xue, Qiuyue; Pan, Guoqing; Meng, Qing H.; Tuo, Xiaoyu; Cai, Xuemei; Chen, Zhenghui; Li, Ya; Huang, Tao; Duan, Xincen; Duan, Yong

    2017-01-01

    Objectives Lung cancer in Xuanwei (LCXW), China, is known throughout the world for its distinctive characteristics, but little is known about its pathogenesis. The purpose of this study was to screen potential novel “driver genes” in LCXW. Methods Genome-wide DNA copy number alterations (CNAs) were detected by array-based comparative genomic hybridization and differentially expressed genes (DEGs) by gene expression microarrays in 8 paired LCXW and non-cancerous lung tissues. Candidate driver genes were screened by integrated analysis of CNAs and DEGs. The candidate genes were further validated by real-time quantitative polymerase chain reaction. Results Large numbers of CNAs and DEGs were detected, respectively. Some of the most frequently occurring CNAs included gains at 5p15.33-p15.32, 5p15.1-p14.3, and 5p14.3-p14.2 and losses at 11q24.3, 21q21.1, 21q22.12-q22.13, and 21q22.2. Integrated analysis of CNAs and DEGs identified 24 candidate genes with frequent copy number gains and concordant upregulation, which were considered potential oncogenes, including CREB3L4, TRIP13, and CCNE2. In addition, the analysis identified 19 candidate genes with a negative association between copy number change and expression change, considered potential tumor suppressor genes, including AHRR, NKD2, and KLF10. One of the most studied oncogenes, MYC, may not play a carcinogenic role in LCXW. Conclusions This integrated analysis of CNAs and DEGs identified several potential novel LCXW-related genes, laying an important foundation for further research on the pathogenesis of LCXW and identification of novel biomarkers or therapeutic targets. PMID:28056099

  10. Alterations in gene expression of proprotein convertases in human lung cancer have a limited number of scenarios.

    PubMed

    Demidyuk, Ilya V; Shubin, Andrey V; Gasanov, Eugene V; Kurinov, Alexander M; Demkin, Vladimir V; Vinogradova, Tatyana V; Zinovyeva, Marina V; Sass, Alexander V; Zborovskaya, Irina B; Kostrov, Sergey V

    2013-01-01

    Proprotein convertases (PCs) is a protein family which includes nine highly specific subtilisin-like serine endopeptidases in mammals. The system of PCs is involved in carcinogenesis and levels of PC mRNAs alter in cancer, which suggests expression status of PCs as a possible marker for cancer typing and prognosis. The goal of this work was to assess the information value of expression profiling of PC genes. Quantitative polymerase chain reaction was used for the first time to analyze mRNA levels of all PC genes as well as matrix metalloproteinase genes MMP2 and MMP14, which are substrates of PCs, in 30 matched pairs of samples of human lung cancer tumor and adjacent tissues without pathology. Significant changes in the expression of PCs have been revealed in tumor tissues: increased FURIN mRNA level (p<0.00005) and decreased mRNA levels of PCSK2 (p<0.007), PCSK5 (p<0.0002), PCSK7 (p<0.002), PCSK9 (p<0.00008), and MBTPS1 (p<0.00004) as well as a tendency to increase in the level of PCSK1 mRNA. Four distinct groups of samples have been identified by cluster analysis of the expression patterns of PC genes in tumor vs. normal tissue. Three of these groups covering 80% of samples feature a strong elevation in the expression of a single gene in cancer: FURIN, PCSK1, or PCSK6. Thus, the changes in the expression of PC genes have a limited number of scenarios, which may reflect different pathways of tumor development and cryptic features of tumors. This finding allows to consider the mRNAs of PC genes as potentially important tumor markers.

  11. Column Number Density Expressions Through M = 0 and M = 1 Point Source Plumes Along Any Straight Path

    NASA Technical Reports Server (NTRS)

    Woronowicz, Michael S.

    2016-01-01

    Analytical expressions for column number density (CND) are developed for optical line of sight paths through a variety of steady free molecule point source models including directionally-constrained effusion (Mach number M = 0) and flow from a sonic orifice (M 1). Sonic orifice solutions are approximate, developed using a fair simulacrum fitted to the free molecule solution. Expressions are also developed for a spherically-symmetric thermal expansion (M = 0). CND solutions are found for the most general paths relative to these sources and briefly explored. It is determined that the maximum CND from a distant location through directed effusion and sonic orifice cases occurs along the path parallel to the source plane that intersects the plume axis. For the effusive case this value is exactly twice the CND found along the ray originating from that point of intersection and extending to infinity along the plumes axis. For sonic plumes this ratio is reduced to about 43. For high Mach number cases the maximum CND will be found along the axial centerline path.

  12. Column number density expressions through M = 0 and M = 1 point source plumes along any straight path

    NASA Astrophysics Data System (ADS)

    Woronowicz, Michael

    2016-11-01

    Analytical expressions for column number density (CND) are developed for optical line of sight paths through a variety of steady free molecule point source models including directionally-constrained effusion (Mach number M = 0) and flow from a sonic orifice (M = 1). Sonic orifice solutions are approximate, developed using a fair simulacrum fitted to the free molecule solution. Expressions are also developed for a spherically-symmetric thermal expansion (M = 0). CND solutions are found for the most general paths relative to these sources and briefly explored. It is determined that the maximum CND from a distant location through directed effusion and sonic orifice cases occurs along the path parallel to the source plane that intersects the plume axis. For the effusive case this value is exactly twice the CND found along the ray originating from that point of intersection and extending to infinity along the plume's axis. For sonic plumes this ratio is reduced to about 4/3. For high Mach number cases the maximum CND will be found along the axial centerline path.

  13. Summary of dimensionless Texas hyetographs and distribution of storm depth developed for Texas Department of Transportation research project 0–4194

    USGS Publications Warehouse

    Asquith, William H.; Roussel, Meghan C.; Thompson, David B.; Cleveland, Theodore G.; Fang, Xing

    2005-01-01

    Hyetographs and storm depth distributions are important elements of hydraulic design by Texas Department of Transportation engineers. Design hyetographs are used in conjunction with unit hydrographs to obtain peak discharge and hydrograph shape for hydraulic design. Storm-depth distributions can be used to assess the probability of a total rainfall depth for a storm. A research project from 2000–2004 has been conducted to (1) determine if existing Natural Resources Conservation Service (NRCS) dimensionless hyetographs are representative of storms in Texas, (2) provide new procedures for dimensionless hyetograph estimation if the NRCS hyetographs are not representative, and (3) provide a procedure to estimate the distribution of storm depth for Texas. This report summarizes the research activities and results of the research project. The report documents several functional models of dimensionless hyetographs and provides curves and tabulated ordinates of empirical (nonfunctional) dimensionless hyetographs for a database of runoff-producing storms in Texas. The dimensionless hyetographs are compared to the NRCS dimensionless hyetographs. The distribution of storm depth is documented for seven values of minimum interevent time through dimensionless frequency curves and tables of mean storm depth for each county in Texas. Conclusions regarding application of the research results are included in the report.

  14. Multiplex titration RT-PCR: rapid determination of gene expression patterns for a large number of genes

    NASA Technical Reports Server (NTRS)

    Nebenfuhr, A.; Lomax, T. L.

    1998-01-01

    We have developed an improved method for determination of gene expression levels with RT-PCR. The procedure is rapid and does not require extensive optimization or densitometric analysis. Since the detection of individual transcripts is PCR-based, small amounts of tissue samples are sufficient for the analysis of expression patterns in large gene families. Using this method, we were able to rapidly screen nine members of the Aux/IAA family of auxin-responsive genes and identify those genes which vary in message abundance in a tissue- and light-specific manner. While not offering the accuracy of conventional semi-quantitative or competitive RT-PCR, our method allows quick screening of large numbers of genes in a wide range of RNA samples with just a thermal cycler and standard gel analysis equipment.

  15. Parvalbumin and neuropeptide Y expressing hippocampal GABA-ergic inhibitory interneuron numbers decline in a model of Gulf War illness

    PubMed Central

    Megahed, Tarick; Hattiangady, Bharathi; Shuai, Bing; Shetty, Ashok K.

    2015-01-01

    Cognitive dysfunction is amongst the most conspicuous symptoms in Gulf War illness (GWI). Combined exposure to the nerve gas antidote pyridostigmine bromide (PB), pesticides and stress during the Persian Gulf War-1 (PGW-1) are presumed to be among the major causes of GWI. Indeed, our recent studies in rat models have shown that exposure to GWI-related (GWIR) chemicals and mild stress for 4 weeks engenders cognitive impairments accompanied with several detrimental changes in the hippocampus. In this study, we tested whether reduced numbers of hippocampal gamma-amino butyric acid (GABA)-ergic interneurons are among the pathological changes induced by GWIR-chemicals and stress. Animals were exposed to low doses of GWIR-chemicals and mild stress for 4 weeks. Three months after this exposure, subpopulations of GABA-ergic interneurons expressing the calcium binding protein parvalbumin (PV), the neuropeptide Y (NPY) and somatostatin (SS) in the hippocampus were stereologically quantified. Animals exposed to GWIR-chemicals and stress for 4 weeks displayed reduced numbers of PV-expressing GABA-ergic interneurons in the dentate gyrus and NPY-expressing interneurons in the CA1 and CA3 subfields. However, no changes in SS+ interneuron population were observed in the hippocampus. Furthermore, GABA-ergic interneuron deficiency in these animals was associated with greatly diminished hippocampus neurogenesis. Because PV+ and NPY+ interneurons play roles in maintaining normal cognitive function and neurogenesis, and controlling the activity of excitatory neurons in the hippocampus, reduced numbers of these interneurons may be one of the major causes of cognitive dysfunction and reduced neurogenesis observed in GWI. Hence, strategies that improve inhibitory neurotransmission in the hippocampus may prove beneficial for reversing cognitive dysfunction in GWI. PMID:25620912

  16. Parvalbumin and neuropeptide Y expressing hippocampal GABA-ergic inhibitory interneuron numbers decline in a model of Gulf War illness.

    PubMed

    Megahed, Tarick; Hattiangady, Bharathi; Shuai, Bing; Shetty, Ashok K

    2014-01-01

    Cognitive dysfunction is amongst the most conspicuous symptoms in Gulf War illness (GWI). Combined exposure to the nerve gas antidote pyridostigmine bromide (PB), pesticides and stress during the Persian Gulf War-1 (PGW-1) are presumed to be among the major causes of GWI. Indeed, our recent studies in rat models have shown that exposure to GWI-related (GWIR) chemicals and mild stress for 4 weeks engenders cognitive impairments accompanied with several detrimental changes in the hippocampus. In this study, we tested whether reduced numbers of hippocampal gamma-amino butyric acid (GABA)-ergic interneurons are among the pathological changes induced by GWIR-chemicals and stress. Animals were exposed to low doses of GWIR-chemicals and mild stress for 4 weeks. Three months after this exposure, subpopulations of GABA-ergic interneurons expressing the calcium binding protein parvalbumin (PV), the neuropeptide Y (NPY) and somatostatin (SS) in the hippocampus were stereologically quantified. Animals exposed to GWIR-chemicals and stress for 4 weeks displayed reduced numbers of PV-expressing GABA-ergic interneurons in the dentate gyrus and NPY-expressing interneurons in the CA1 and CA3 subfields. However, no changes in SS+ interneuron population were observed in the hippocampus. Furthermore, GABA-ergic interneuron deficiency in these animals was associated with greatly diminished hippocampus neurogenesis. Because PV+ and NPY+ interneurons play roles in maintaining normal cognitive function and neurogenesis, and controlling the activity of excitatory neurons in the hippocampus, reduced numbers of these interneurons may be one of the major causes of cognitive dysfunction and reduced neurogenesis observed in GWI. Hence, strategies that improve inhibitory neurotransmission in the hippocampus may prove beneficial for reversing cognitive dysfunction in GWI.

  17. The effect of visitor number and spice provisioning in pacing expression by jaguars evaluated through a case study.

    PubMed

    Vidal, L S; Guilherme, F R; Silva, V F; Faccio, M C S R; Martins, M M; Briani, D C

    2016-06-01

    Captive animals exhibit stereotypic pacing in response to multiple causes, including the inability to escape from human contact. Environmental enrichment techniques can minimize pacing expression. By using an individual-based approach, we addressed whether the amount of time two males and a female jaguar (Panthera onca) devote to pacing varied with the number of visitors and tested the effectiveness of cinnamon and black pepper in reducing pacing. The amount of time that all jaguars engaged in pacing increased significantly with the number of visitors. Despite the difference between the males regarding age and housing conditions, both devoted significantly less time to pacing following the addition of both spices, which indicates their suitability as enrichment techniques. Mean time devoted to pacing among the treatments did not differ for the female. Our findings pointed out to the validity of individual-based approaches, as they can reveal how suitable olfactory stimuli are to minimizing stereotypies irrespective of particular traits.

  18. Number and regional distribution of GAD65 mRNA-expressing interneurons in the rat hippocampal formation.

    PubMed

    Czéh, B; Abrahám, Hajnalka; Tahtakran, Siroun; Houser, Carolyn R; Seress, L

    2013-12-01

    In rodent models for neuropsychiatric disorders reduced number of hippocampal interneurons have been reported, but the total number of GABAergic neurons in the normal rat hippocampus is yet unknown. We used in situ hybridization method to label the 65 isoform of glutamic acid decarboxylase (GAD65) and counted the number of GAD65 mRNA-expressing neurons along the entire septo-temporal axis of the hippocampus. We found that 2/3 of the interneurons were in Ammon's horn (61,590) and 1/3 in the dentate gyrus (28,000). We observed the following numbers in Ammon's horn: CA3 area 33,400, CA2 area 4,190, CA1 area 24,000 and in the dentate gyrus: 6,000 in the molecular and 9,000 in the granule cell layers and 13,000 in the hilus. GAD65 mRNA-expressing neurons were significantly more numerous in dorsal than in ventral hippocampus. The ratio between interneurons and principal cells was lowest in the granule cell layer (0.9%) and highest in hilus (21%). In Ammon's horn this ratio was constant being 13% in CA3 and 8% in CA1-2 areas. In the entire hippocampal formation, the interneuron/principal cell ratio was 6%, with a significant difference between Ammon's horn (9.5%) and the dentate gyrus (2.8%) including the hilus. Such low ratios could suggest that even a limited loss of GABAergic neurons in the hippocampus may have a considerable functional impact.

  19. Diversification of spatiotemporal expression and copy number variation of the echinoid hbox12/pmar1/micro1 multigene family

    PubMed Central

    Geraci, Fabiana; Spinelli, Giovanni

    2017-01-01

    Changes occurring during evolution in the cis-regulatory landscapes of individual members of multigene families might impart diversification in their spatiotemporal expression and function. The archetypal member of the echinoid hbox12/pmar1/micro1 family is hbox12-a, a homeobox-containing gene expressed exclusively by dorsal blastomeres, where it governs the dorsal/ventral gene regulatory network during embryogenesis of the sea urchin Paracentrotus lividus. Here we describe the inventory of the hbox12/pmar1/micro1 genes in P. lividus, highlighting that gene copy number variation occurs across individual sea urchins of the same species. We show that the various hbox12/pmar1/micro1 genes group into three subfamilies according to their spatiotemporal expression, which ranges from broad transcription throughout development to transient expression in either the animal hemisphere or micromeres of the early embryo. Interestingly, the promoter regions of those genes showing comparable expression patterns are highly similar, while differing from those of the other subfamilies. Strikingly, phylogenetic analysis suggests that the hbox12/pmar1/micro1 genes are species-specific, exhibiting extensive divergence in their noncoding, but not in their coding, sequences across three distinct sea urchin species. In spite of this, two micromere-specific genes of P. lividus possess a TCF/LEF-binding motif in a similar position, and their transcription relies on Wnt/β-catenin signaling, similar to the pmar1 and micro1 genes, which in other sea urchin species are involved in micromere specification. Altogether, our findings suggest that the hbox12/pmar1/micro1 gene family evolved rather rapidly, generating paralogs whose cis-regulatory sequences diverged following multiple rounds of duplication from a common ancestor. PMID:28350855

  20. Dimensionless scalings of confinement, heat transport and pedestal stability in JET-ILW and comparison with JET-C

    NASA Astrophysics Data System (ADS)

    Frassinetti, L.; Saarelma, S.; Lomas, P.; Nunes, I.; Rimini, F.; Beurskens, M. N. A.; Bilkova, P.; Boom, J. E.; de la Luna, E.; Delabie, E.; Drewelow, P.; Flanagan, J.; Garzotti, L.; Giroud, C.; Hawks, N.; Joffrin, E.; Kempenaars, M.; Kim, Hyun-Tae; Kruezi, U.; Loarte, A.; Lomanowski, B.; Lupelli, I.; Meneses, L.; Maggi, C. F.; Menmuir, S.; Peterka, M.; Rachlew, E.; Romanelli, M.; Stefanikova, E.; Contributors, JET

    2017-01-01

    Three dimensionless scans in the normalized Larmor radius ρ *, normalized collisionality ν * and normalized plasma pressure β have been performed in JET with the ITER-like wall (JET-ILW). The normalized energy confinement and the thermal diffusivity exhibit a scaling with ρ * consistent with the earlier results obtained in the carbon wall JET (JET-C) and with a gyro-Bohm scaling. In the pedestal, experimental results show that the stability is not dependent on ρ *, qualitatively in agreement with the peeling-ballooning (P-B) model. The ν * dimensionless scaling shows that JET-ILW normalized confinement has a stronger dependence on collisionality than JET-C. This leads to a reduction of the difference in the confinement between JET-ILW and JET-C to  ≈10% at low ν *. The pedestal stability shows an improvement with decreasing ν *. This is ascribed to the increase of the bootstrap current, to the reduction of the pedestal width and to the reduction of the relative shift between pedestal density and temperature position. The β dimensionless scan shows that, at low collisionality, JET-ILW normalized confinement has no clear dependence with β, in agreement with part of the earlier scalings. At high collisionality, a reduction of the normalized confinement with increasing β is observed. This behaviour is driven mainly by the pedestal where the stability is reduced with increasing β. The P-B analysis shows that the stability reduction with increasing β at high ν * is due to the destabilizing effect of the increased relative shift.

  1. Deciphering the associations between gene expression and copy number alteration using a sparse double Laplacian shrinkage approach

    PubMed Central

    Shi, Xingjie; Zhao, Qing; Huang, Jian; Xie, Yang; Ma, Shuangge

    2015-01-01

    Motivation: Both gene expression levels (GEs) and copy number alterations (CNAs) have important biological implications. GEs are partly regulated by CNAs, and much effort has been devoted to understanding their relations. The regulation analysis is challenging with one gene expression possibly regulated by multiple CNAs and one CNA potentially regulating the expressions of multiple genes. The correlations among GEs and among CNAs make the analysis even more complicated. The existing methods have limitations and cannot comprehensively describe the regulation. Results: A sparse double Laplacian shrinkage method is developed. It jointly models the effects of multiple CNAs on multiple GEs. Penalization is adopted to achieve sparsity and identify the regulation relationships. Network adjacency is computed to describe the interconnections among GEs and among CNAs. Two Laplacian shrinkage penalties are imposed to accommodate the network adjacency measures. Simulation shows that the proposed method outperforms the competing alternatives with more accurate marker identification. The Cancer Genome Atlas data are analysed to further demonstrate advantages of the proposed method. Availability and implementation: R code is available at http://works.bepress.com/shuangge/49/ Contact: shuangge.ma@yale.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26342102

  2. Loss of p16 expression and copy number changes of CDKN2A in a spectrum of spitzoid melanocytic lesions.

    PubMed

    Harms, Paul W; Hocker, Thomas L; Zhao, Lili; Chan, May P; Andea, Aleodor A; Wang, Min; Harms, Kelly L; Wang, Michael L; Carskadon, Shannon; Palanisamy, Nallasivam; Fullen, Douglas R

    2016-12-01

    Spitzoid melanocytic lesions, including Spitz nevi (benign), spitzoid melanoma (malignant), and borderline atypical Spitz tumors (ASTs), frequently present challenges for accurate diagnosis and prognosis. Evaluation for loss of the tumor suppressor p16, encoded by CDKN2A gene on chromosome 9p21.3, has been proposed to be useful for evaluation of spitzoid melanocytic lesions. However, reports on the utility of p16 immunohistochemistry for spitzoid lesions have been conflicting, and few studies have directly compared p16 immunohistochemistry with fluorescence in situ hybridization (FISH) for CDKN2A genomic status. We analyzed a spectrum of benign (n=24), borderline (n=27), and malignant (n=19) spitzoid lesions for p16 protein expression by immunohistochemistry and CDKN2A copy number by FISH. Immunohistochemistry was evaluated by 2 scoring methods: H score and 2-tiered score (positive or negative for p16 loss). By immunohistochemistry, loss of p16 expression was not observed in Spitz nevi (0/24) but was seen in ASTs (7/27; 26%) and spitzoid melanomas (3/19; 16%). By H score, p16 expression was significantly higher in Spitz nevi relative to ASTs or spitzoid melanomas. Similarly, copy number aberrations of CDKN2A by FISH were absent in Spitz nevi but were found in 2 (9.5%) of 21 ASTs and 4 (33%) of 12 spitzoid melanomas. Our findings from this large cohort suggest that p16 aberrations are highly specific for borderline and malignant spitzoid neoplasms relative to Spitz nevi. Similar to ASTs, p16 loss in spitzoid melanomas may occur in the presence or absence of genomic CDKN2A loss.

  3. Comparative analyses of gene copy number and mRNA expression in GBM tumors and GBM xenografts

    SciTech Connect

    Hodgson, J. Graeme; Yeh, Ru-Fang; Ray, Amrita; Wang, Nicholas J.; Smirnov, Ivan; Yu, Mamie; Hariono, Sujatmi; Silber, Joachim; Feiler, Heidi S.; Gray, Joe W.; Spellman, Paul T.; Vandenberg, Scott R.; Berger, Mitchel S.; James, C. David

    2009-04-03

    Development of model systems that recapitulate the molecular heterogeneity observed among glioblastoma multiforme (GBM) tumors will expedite the testing of targeted molecular therapeutic strategies for GBM treatment. In this study, we profiled DNA copy number and mRNA expression in 21 independent GBM tumor lines maintained as subcutaneous xenografts (GBMX), and compared GBMX molecular signatures to those observed in GBM clinical specimens derived from the Cancer Genome Atlas (TCGA). The predominant copy number signature in both tumor groups was defined by chromosome-7 gain/chromosome-10 loss, a poor-prognosis genetic signature. We also observed, at frequencies similar to that detected in TCGA GBM tumors, genomic amplification and overexpression of known GBM oncogenes, such as EGFR, MDM2, CDK6, and MYCN, and novel genes, including NUP107, SLC35E3, MMP1, MMP13, and DDX1. The transcriptional signature of GBMX tumors, which was stable over multiple subcutaneous passages, was defined by overexpression of genes involved in M phase, DNA replication, and chromosome organization (MRC) and was highly similar to the poor-prognosis mitosis and cell-cycle module (MCM) in GBM. Assessment of gene expression in TCGA-derived GBMs revealed overexpression of MRC cancer genes AURKB, BIRC5, CCNB1, CCNB2, CDC2, CDK2, and FOXM1, which form a transcriptional network important for G2/M progression and/or checkpoint activation. Our study supports propagation of GBM tumors as subcutaneous xenografts as a useful approach for sustaining key molecular characteristics of patient tumors, and highlights therapeutic opportunities conferred by this GBMX tumor panel for testing targeted therapeutic strategies for GBM treatment.

  4. Differential viral levels and immune gene expression in three stocks of Apis mellifera induced by different numbers of Varroa destructor.

    PubMed

    Khongphinitbunjong, Kitiphong; de Guzman, Lilia I; Tarver, Matthew R; Rinderer, Thomas E; Chen, Yanping; Chantawannakul, Panuwan

    2015-01-01

    The viral levels and immune responses of Italian honey bees (IHB), Russian honey bees (RHB) and an outcross of Varroa Sensitive Hygienic bees (POL) deliberately infested with one or two foundress Varroa were compared. We found that the Deformed wing virus (DWV) level in IHB inoculated with one or two foundress Varroa increased to about 10(3) or 10(5) fold the levels of their uninfested brood. In contrast, POL (10(2) or 10(4) fold) and RHB (10(2) or l0(4) fold) supported a lower increase in DWV levels. The feeding of different stages of Varroa nymphs did not increase DWV levels of their pupal hosts. Analyses of their corresponding Varroa mites showed the same trends: two foundress Varroa yielded higher DWV levels than one foundress, and the addition of nymphs did not increase viral levels. Using the same pupae examined for the presence of viruses, 16 out of 24 genes evaluated showed significant differential mRNA expression levels among the three honey bee stocks. However, only four genes (Defensin, Dscam, PPOact and spaetzle), which were expressed at similar levels in uninfested pupae, were altered by the number of feeding foundress Varroa and levels of DWV regardless of stocks. This research provides the first evidence that immune response profiles of different honey bee stocks are induced by Varroa parasitism.

  5. Breast cancer cell cyclooxygenase-2 expression alters extracellular matrix structure and function and numbers of cancer associated fibroblasts.

    PubMed

    Krishnamachary, Balaji; Stasinopoulos, Ioannis; Kakkad, Samata; Penet, Marie-France; Jacob, Desmond; Wildes, Flonne; Mironchik, Yelena; Pathak, Arvind P; Solaiyappan, Meiyappan; Bhujwalla, Zaver M

    2017-01-31

    Cyclooxygenase-2 (COX-2) is a critically important mediator of inflammation that significantly influences tumor angiogenesis, invasion, and metastasis. We investigated the role of COX-2 expressed by triple negative breast cancer cells in altering the structure and function of the extracellular matrix (ECM). COX-2 downregulation effects on ECM structure and function were investigated using magnetic resonance imaging (MRI) and second harmonic generation (SHG) microscopy of tumors derived from triple negative MDA-MB-231 breast cancer cells, and a derived clone stably expressing a short hairpin (shRNA) molecule downregulating COX-2. MRI of albumin-GdDTPA was used to characterize macromolecular fluid transport in vivo and SHG microscopy was used to quantify collagen 1 (Col1) fiber morphology. COX-2 downregulation decreased Col1 fiber density and altered macromolecular fluid transport. Immunohistochemistry identified significantly fewer activated cancer associated fibroblasts (CAFs) in low COX-2 expressing tumors. Metastatic lung nodules established by COX-2 downregulated cells were infrequent, smaller, and contained fewer Col1 fibers.COX-2 overexpression studies were performed with tumors derived from triple negative SUM-149 breast cancer cells lentivirally transduced to overexpress COX-2. SHG microscopy identified significantly higher Col1 fiber density in COX-2 overexpressing tumors with an increase of CAFs. These data expand upon the roles of COX-2 in shaping the structure and function of the ECM in primary and metastatic tumors, and identify the potential role of COX-2 in modifying the number of CAFs in tumors that may have contributed to the altered ECM.

  6. The dose dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates.

    PubMed Central

    Ko, M S; Nakauchi, H; Takahashi, N

    1990-01-01

    Glucocorticoid hormones induce the transcription of genes having glucocorticoid response elements in a dose dependent manner. To determine whether this dose dependence represents a response of individual templates or of the mass of templates, we introduced a bacterial beta-galactosidase gene linked to the glucocorticoid-inducible enhancer/promoter of the mouse mammary tumor virus (MTV) into Ltk- cells and obtained stable transformants containing a single or a few templates per cell. Visual inspection and flow cytometry analysis by enzyme histochemistry assay for beta-galactosidase revealed that individual cells showed very heterogeneous beta-galactosidase activity after 48 h induction with dexamethasone. When the glucocorticoid concentration was increased, an increasing cell population producing beta-galactosidase was observed. These phenomena were probably not due to heterogeneity of template copy number or to a predetermined cellular state among individual cells, since cells forming a single small colony gave similar results. This was also supported by data showing that recloned cells retained both their responsiveness to the glucocorticoid hormone and their digestion pattern in Southern blotting analyses. These results indicate that the dose dependent increase of glucocorticoid-inducible gene expression is caused by an increase in the number of transcriptionally active templates. Images Fig. 1. Fig. 3. Fig. 4. Fig. 5. Fig. 8. PMID:2167833

  7. Development of Dimensionless Surge Response Functions for Hazard Assessment at Panama City, Florida

    NASA Astrophysics Data System (ADS)

    Taylor, N. R.; Irish, J. L.; Hagen, S. C.; Kaihatu, J. M.; McLaughlin, P. W.

    2013-12-01

    Reliable and robust methods of extreme value analysis in hurricane surge forecasting are of high importance in the coastal engineering profession. The Joint Probability Method (JPM) has become the preferred statistical method over the Historical Surge Population (HSP) method, due to its ability to give more accurate surge predictions, as demonstrated by Irish et. al in 2011 (J. Geophys. Res.). One disadvantage to this method is its high computational cost; a single location can require hundreds of simulated storms, each needing one thousand computational hours or more to complete. One way of overcoming this issue is to use an interpolating function, called a surge response function, to reduce the required number of simulations to a manageable number. These sampling methods, which use physical scaling laws, have been shown to significantly reduce the number of simulated storms needed for application of the JPM method. In 2008, Irish et. al. (J. Phys. Oceanogr.) demonstrated that hurricane surge scales primarily as a function of storm size and intensity. Additionally, Song et. al. in 2012 (Nat. Hazards) has shown that surge response functions incorporating bathymetric variations yield highly accurate surge estimates along the Texas coastline. This study applies the Song. et. al. model to 73 stations along the open coast, and 273 stations within the bays, in Panama City, Florida. The model performs well for the open coast and bay areas; surge levels at most stations along the open coast were predicted with RMS errors below 0.40 meters, and R2 values at or above 0.80. The R2 values for surge response functions within bays were consistently at or above 0.75. Surge levels at most stations within the North Bay and East Bay were predicted with RMS errors below 0.40 meters; within the West Bay, surge was predicted with RMS errors below 0.52 meters. Accurately interpolating surge values along the Panama City coast and bays enables efficient use of the JPM model in order to

  8. Nusselt numbers of laminar, oscillating flows in stacks and regenerators with pores of arbitrary cross-sectional geometry.

    PubMed

    Brady, John F

    2013-04-01

    Though widely used in steady-flow heat transfer applications, the Nusselt number-a dimensionless heat transfer coefficient-has not been studied as thoroughly in oscillating flows and is therefore not generally used in thermoacoustic applications. This paper presents expressions for the Nusselt numbers of laminar oscillating flows within the pores of stacks and regenerators, derived from thermoacoustic theory developed by Rott and Swift. These expressions are based on bulk (velocity-weighted, cross-sectionally averaged) temperature, rather than the cross-sectionally averaged temperature. Results are shown for parallel plates, circular pores, rectangular pores, and within the boundary layer limit. It is shown that bulk temperature does not become infinite during an acoustic cycle and that the Nusselt number is a complex constant at all times. In addition, steady-flow Nusselt numbers are recovered when velocity and temperature profiles are like those in steady flows.

  9. A dimensionless relative trajectory estimation algorithm for autonomous imaging of a small astronomical body in a close distance flyby

    NASA Astrophysics Data System (ADS)

    Ariu, Kaito; Inamori, Takaya; Funase, Ryu; Nakasuka, Shinichi

    2016-08-01

    The world's first micro-spacecraft, ;Proximate Object Close flYby with Optical Navigation; (PROCYON) has the advanced mission to approach an asteroid in dozen km (a one-order closer imaging distance compared with previous probes). In such a close distance encounter, the estimation of the relative trajectory of the target is necessary to perform autonomous imaging. However, the estimation is difficult owing to rapid changes of the line-of-sight direction of the target body. To overcome this problem, a novel dimensionless or direction only relative trajectory estimation algorithm, which uses a least square method, is proposed. The evaluation function for the least square method coincides with the error property of picture information to enable all of its calculations to be recursive and linear. It is suited for the implementation on the limited on-board computer. Numerical simulation results indicate that the proposed algorithm should enable the one-order closer flyby observation.

  10. bla(KPC) RNA expression correlates with two transcriptional start sites but not always with gene copy number in four genera of Gram-negative pathogens.

    PubMed

    Roth, Amanda L; Kurpiel, Philip M; Lister, Philip D; Hanson, Nancy D

    2011-08-01

    Klebsiella pneumoniae carbapenemase (KPC)-producing organisms are therapeutically and diagnostically challenging. It is possible that bla(KPC) gene expression plays a role in the variability observed in clinical susceptibility testing. bla(KPC) transformants together with 10 clinical isolates representing four genera were evaluated for bla(KPC) copy number and gene expression and correlated with β-lactam MIC data. The data suggest that mechanisms other than gene copy number and expression of bla(KPC) contribute to variability in susceptibility when testing KPC-producing isolates.

  11. Empirical, dimensionless, cumulative-rainfall hyetographs developed from 1959-86 storm data for selected small watersheds in Texas

    USGS Publications Warehouse

    Williams-Sether, Tara; Asquith, William H.; Thompson, David B.; Cleveland, Theodore G.; Fang, Xing

    2004-01-01

    A database of incremental cumulative-rainfall values for storms that occurred in small urban and rural watersheds in north and south central Texas during the period from 1959 to 1986 was used to develop empirical, dimensionless, cumulative-rainfall hyetographs. Storm-quartile classifications were determined from the cumulative-rainfall values, which were divided into data groups on the basis of storm-quartile classification (first, second, third, fourth, and first through fourth combined), storm duration (0 to 6, 6 to 12, 12 to 24, 24 to 72, and 0 to 72 hours), and rainfall amount (1 inch or more). Removal of long leading tails, in effect, shortened the storm duration and, in some cases, affected the storm-quartile classification. Therefore, two storm groups, untrimmed and trimmed, were used for analysis. The trimmed storms generally are preferred for interpretation. For a 12-hour or less trimmed storm duration, approximately 49 percent of the storms are first quartile. For trimmed storm durations of 12 to 24 and 24 to 72 hours, 47 and 38 percent, respectively, of the storms are first quartile. For a trimmed storm duration of 0 to 72 hours, the first-, second-, third-, and fourth-quartile storms accounted for 46, 21, 20, and 13 percent of all storms, respectively. The 90th-percentile curve for first-quartile storms indicated about 90 percent of the cumulative rainfall occurs during the first 20 percent of the storm duration. The 10th-percentile curve for first-quartile storms indicated about 30 percent of the cumulative rainfall occurs during the first 20 percent of the storm duration. The 90th-percentile curve for fourth-quartile storms indicated about 33 percent of the cumulative rainfall occurs during the first 20 percent of the storm duration. The 10th-percentile curve for fourth-quartile storms indicated less than 5 percent of the cumulative rainfall occurs during the first 20 percent of the storm duration. Statistics for the empirical, dimensionless

  12. Characterization of gear faults in variable rotating speed using Hilbert-Huang Transform and instantaneous dimensionless frequency normalization

    NASA Astrophysics Data System (ADS)

    Wu, T. Y.; Chen, J. C.; Wang, C. C.

    2012-07-01

    The objective of this research is to investigate the feasibility of utilizing the instantaneous dimensionless frequency (DLF) normalization and Hilbert-Huang Transform (HHT) to characterize the different gear faults in case of variable rotating speed. The normalized DLF of the vibration signals are calculated based on the rotating speed of shaft and the instantaneous frequencies of Intrinsic Mode Functions (IMFs) which are decomposed by Empirical Mode Decomposition (EMD) process. The faulty gear features on DLF-energy distribution of vibration signal can be extracted without the presence of shaft rotating speed, so that the proposed approach can be applied for characterizing the malfunctions of gearbox system under variable shaft rotating speed. A test rig of gear transmission system is performed to illustrate the gear faults, including worn tooth, broken tooth and gear unbalance. Different methods to determine the instantaneous frequency are employed to verify the consistence of characterization results. The DLF-energy distributions of vibration signals are investigated in different faulty gear conditions. The analysis results demonstrate the capability and effectiveness of the proposed approach for characterizing the gear malfunctions at the DLFs corresponding to the meshing frequency as well as the shaft rotating frequency. The support vector machine (SVM) is then employed to classify the vibration patterns of gear transmission system at different malfunctions. Using the energy distribution at the characteristic DLFs as the features, the different fault types of gear can be identified by SVM with high accuracy.

  13. Bioinformatic identification of prognostic signature defined by copy number alteration and expression of CCNE1 in non-muscle invasive bladder cancer

    PubMed Central

    Song, Bic-Na; Kim, Seon-Kyu; Chu, In-Sun

    2017-01-01

    Non-muscle invasive bladder cancer (NMIBC) patients frequently fail to respond to treatment and experience disease progression because of their clinical and biological diversity. In this study, we identify a prognostic molecular signature for predicting the heterogeneity of NMIBC by using an integrative analysis of copy number and gene expression data. We analyzed the copy number and gene expression profiles of 404 patients with bladder cancer obtained from The Cancer Genome Atlas (TCGA) consortium. Of the 14 molecules with significant copy number alterations that were previously reported, 13 were significantly correlated with copy number and expression changes. Prognostic gene sets based on the 13 genes were developed, and their prognostic values were verified in three independent patient cohorts (n=501). Among them, a signature of CCNE1 and its coexpressed genes was significantly associated with disease progression and validated in the independent cohorts. The CCNE1 signature was an independent risk factor based on the result of a multivariate analysis (hazard ratio=6.849, 95% confidence interval=1.613–29.092, P=0.009). Finally, gene network and upstream regulator analyses revealed that NMIBC progression is potentially mediated by CCND1-CCNE1-SP1 pathways. The prognostic molecular signature defined by copy number and expression changes of CCNE1 suggests a novel diagnostic tool for predicting the likelihood of NMIBC progression. PMID:28082741

  14. Number Guessing

    ERIC Educational Resources Information Center

    Sezin, Fatin

    2009-01-01

    It is instructive and interesting to find hidden numbers by using different positional numeration systems. Most of the present guessing techniques use the binary system expressed as less-than, greater-than or present-absent type information. This article describes how, by employing four cards having integers 1-64 written in different colours, one…

  15. Approximate expressions that describe the profiles of sessile and pendent drops for the cases of small Bond numbers and strong wetting

    NASA Astrophysics Data System (ADS)

    Galaktionov, E. V.; Galaktionova, N. E.; Tropp, E. A.

    2016-12-01

    Variational formulations of the problems of sessile and pendent drops are given taking into account the force of gravity in the axially symmetric case. Approximate expressions that describe the surface profiles of these drops by the asymptotic method for small Bond numbers have been obtained by the linearization method in the case of strong wetting.

  16. Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat.

    PubMed

    Mochida, Keiichi; Kawaura, Kanako; Shimosaka, Etsuo; Kawakami, Naoto; Shin-I, Tadasu; Kohara, Yuji; Yamazaki, Yukiko; Ogihara, Yasunari

    2006-09-01

    In order to assess global changes in gene expression patterns in stress-induced tissues, we conducted large-scale analysis of expressed sequence tags (ESTs) in common wheat. Twenty-one cDNA libraries derived from stress-induced tissues, such as callus, as well as liquid cultures and abiotic stress conditions (temperature treatment, desiccation, photoperiod, moisture and ABA) were constructed. Several thousand colonies were randomly selected from each of these 21 cDNA libraries and sequenced from both the 5' and 3' ends. By computing abundantly expressed ESTs, correlated expression patterns of genes across the tissues were monitored. Furthermore, the relationships between gene expression profiles among the stress-induced tissues were inferred from the gene expression patterns. Multi-dimensional analysis of EST data is analogous to microarray experiments. As an example, genes specifically induced and/or suppressed by cold acclimation and heat-shock treatments were selected in silico. Four hundred and ninety genes showing fivefold induction or 218 genes for suppression in comparison to the control expression level were selected. These selected genes were annotated with the BLAST search. Furthermore, gene ontology was conducted for these genes with the InterPro search. Because genes regulated in response to temperature treatment were successfully selected, this method can be applied to other stress-treated tissues. Then, the method was applied to screen genes in response to abiotic stresses such as drought and ABA treatments. In silico selection of screened genes from virtual display should provide a powerful tool for functional plant genomics.

  17. Novel copy number variation of the TGFβ3 gene is associated with TGFβ3 gene expression and duration of fertility traits in hens

    PubMed Central

    Gu, Lantao; Sun, Chenghao; Gong, Yangzhang; Yu, Mei; Li, Shijun

    2017-01-01

    Improvements in the duration of fertility (DF) could increase the interval between successive artificial inseminations, thereby decreasing the cost associated with production of hatching eggs. The molecular mechanisms involved in DF in hens remains under-explored. In this study, expression levels of the transforming growth factor-β genes (TGFβs: TGFβ1, TGFβ2, TGFβ3) were investigated in utero-vaginal junctions (UVJs) of hens with long DF (Group L, n = 10) and short DF (Group S, n = 10). TGFβ1 and 2 tended to exhibit higher expression levels in UVJs from Group L hens. The expression levels of TGFβ3 mRNA and protein were significantly increased in UVJs of hens from Group L compared to hens in Group S. Consistently, six TGFβs downstream genes (DAXX, MEKK1, T-BET, GATA-3, TAK1, and FOXP3) associated with the immune response were found to be significantly differentially expressed in UVJs of Group L than Group S hens. In addition, four SNPs were identified in intron 1 of TGFβ3, and these SNPs were significantly associated with DF traits (P < 0.05). Furthermore, we identified multi-copy and copy number variants (CNVs) in chicken TGFβ3 and later determined significant associations between TGFβ3 CNVs and DF traits in hens. Specifically, TGFβ3 copy number exhibited a significant positive correlation with its expression (P < 0.05). Collectively, our results suggest that chicken DF traits may be regulated by the expression of TGFβ3 in UVJ. Meanwhile, the copy number variation in the TGFβ3 gene identified in this study seems to be one marker for DF traits. PMID:28301526

  18. Adenovirus-mediated ectopic expression of Msx2 in even-numbered rhombomeres induces apoptotic elimination of cranial neural crest cells in ovo.

    PubMed

    Takahashi, K; Nuckolls, G H; Tanaka, O; Semba, I; Takahashi, I; Dashner, R; Shum, L; Slavkin, H C

    1998-05-01

    Distinct cranial neural crest-derived cell types (a number of neuronal as well as non-neuronal cell lineages) are generated at characteristic times and positions in the rhombomeres of the hindbrain in developing vertebrate embryos. To examine this developmental process, we developed a novel strategy designed to test the efficacy of gain-of-function Msx2 expression within rhombomeres in ovo prior to the emigration of cranial neural crest cells (CNCC). Previous studies indicate that CNCC from odd-numbered rhombomeres (r3 and r5) undergo apoptosis in response to exogenous BMP4. We provide evidence that targeted infection in ovo using adenovirus containing Msx2 and a reporter molecule indicative of translation can induce apoptosis in either even- or odd-numbered rhombomeres. Furthermore, infected lacZ-control explants indicated that CNCC emigrated, and that 20% of these cells were double positive for crest cell markers HNK-1 and beta-gal. In contrast, there were no HNK-1 and Msx2 double positive cells emigrating from Msx2 infected explants. These results support the hypothesis that apoptotic elimination of CNCC can be induced by 'gain-of-function' Msx2 expression in even-numbered rhombomeres. These inductive interactions involve qualitative, quantitative, positional and temporal differences in TGF-beta-related signals, Msx2 expression and other transcriptional control.

  19. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

    PubMed Central

    Ravasi, Timothy; Suzuki, Harukazu; Pang, Ken C.; Katayama, Shintaro; Furuno, Masaaki; Okunishi, Rie; Fukuda, Shiro; Ru, Kelin; Frith, Martin C.; Gongora, M. Milena; Grimmond, Sean M.; Hume, David A.; Hayashizaki, Yoshihide; Mattick, John S.

    2006-01-01

    Recent large-scale analyses of mainly full-length cDNA libraries generated from a variety of mouse tissues indicated that almost half of all representative cloned sequences did not contain an apparent protein-coding sequence, and were putatively derived from non-protein-coding RNA (ncRNA) genes. However, many of these clones were singletons and the majority were unspliced, raising the possibility that they may be derived from genomic DNA or unprocessed pre-mRNA contamination during library construction, or alternatively represent nonspecific “transcriptional noise.” Here we show, using reverse transcriptase-dependent PCR, microarray, and Northern blot analyses, that many of these clones were derived from genuine transcripts of unknown function whose expression appears to be regulated. The ncRNA transcripts have larger exons and fewer introns than protein-coding transcripts. Analysis of the genomic landscape around these sequences indicates that some cDNA clones were produced not from terminal poly(A) tracts but internal priming sites within longer transcripts, only a minority of which is encompassed by known genes. A significant proportion of these transcripts exhibit tissue-specific expression patterns, as well as dynamic changes in their expression in macrophages following lipopolysaccharide stimulation. Taken together, the data provide strong support for the conclusion that ncRNAs are an important, regulated component of the mammalian transcriptome. PMID:16344565

  20. Integrated Genome-wide DNA Copy Number and Expression Analysis Identifies Distinct Mechanisms of Primary Chemo-resistance in Ovarian Carcinomas

    PubMed Central

    Etemadmoghadam, Dariush; deFazio, Anna; Beroukhim, Rameen; Mermel, Craig; George, Joshy; Getz, Gaddy; Tothill, Richard; Okamoto, Aikou; Raeder, Maria B; Harnett, Paul; Lade, Stephen; Akslen, Lars A; Tinker, Anna; Locandro, Bianca; Alsop, Kathryn; Chiew, Yoke-Eng; Traficante, Nadia; Fereday, Sian; Johnson, Daryl; Fox, Stephen; Sellers, William; Urashima, Mitsuyoshi; Salvesen, Helga B; Meyerson, Matthew; Bowtell, David

    2009-01-01

    Purpose A significant number of women with serous ovarian cancer are intrinsically refractory to platinum-taxol based treatment. We analyzed somatic DNA copy number variation (CNV) and gene expression data to identify key mechanisms associated with primary resistance in advanced-stage serous cancers. Experimental Design Genome-wide CNV was measured in 118 ovarian tumors using high-resolution oligonucleotide microarrays. A well-defined subset of 85 advanced-stage serous tumors was then used to relate CNV to primary resistance to treatment. The discovery-based approach was complemented by quantitative-PCR copy number analysis of twelve candidate genes as independent validation of previously reported associations with clinical outcome. Likely CNV targets and tumor molecular subtypes were further characterized by gene expression profiling. Results Amplification of 19q12, containing Cyclin E (CCNE1) and 20q11.22-q13.12, mapping immediately adjacent to the steroid receptor co-activator NCOA3, were significantly associated with poor response to primary treatment. Other genes previously associated with CNV and clinical outcome in ovarian cancer were not associated with primary treatment resistance. Chemoresistant tumors with high CCNE1 copy number and protein expression were associated with increased cellular proliferation but so too were a subset of treatment responsive patients, suggesting a cell-cycle independent role for CCNE1 in modulating chemoresponse. Patients with a poor clinical outcome without CCNE1 amplification over expressed genes involved in extracellular matrix deposition. Conclusions We have identified two distinct mechanisms of primary treatment failure in serous ovarian cancer, involving CCNE1 amplification and enhanced extracellular matrix deposition. CCNE1 copy number is validated as a dominant marker of patient outcome in ovarian cancer. PMID:19193619

  1. The number of cells expressing the myelin-supporting oligodendrocyte marker PLP-exon 3b remains unchanged in Wallerian degeneration.

    PubMed

    Li, G; Blakemore, W F

    2004-08-01

    Following spinal cord trauma there is controversy as to whether myelin-supporting oligodendrocytes at a distance from areas of spinal cord damage undergo apoptosis. To examine the response of oligodendrocytes to axon degeneration, we counted the number of oligodendrocytes and oligodendrocyte precursors in the dorsal funiculi during the course of Wallerian degeneration. Axons were disrupted at T13 and the number of labelled cells in the dorsal funiculi counted at T12, 4 days and 2, 4, and 8 weeks after injury using riboprobes to exon-3b of the PLP gene whose expression is considered to restricted to myelin-supporting oligodendrocytes, PDGFRalpha which is regarded as a marker of oligodendrocyte precursors, and MOG a marker previously used to identify myelin-supporting oligodendrocytes. We found that the number of PLP-exon-3b labelled cells remained constant during the course of Wallerian degeneration while the number of cells labelled with the riboprobes to PDGFRalpha and MOG increased. Significantly the number of MOG-positive cells was increased at times when the number of PDGFRalpha labelled cells was highest. The number of PDGFRalpha labelled cells decreased with time while the number PLP-exon-3b labelled cells remained constant. It is therefore possible that the apoptotic oligodendrocytes identified in previous studies could represent degenerating oligodendrocyte precursors or their progeny rather than degenerating myelin-supporting oligodendrocytes.

  2. Increased levels of prolactin receptor expression correlate with the early onset of lupus symptoms and increased numbers of transitional-1 B cells after prolactin treatment

    PubMed Central

    2012-01-01

    Background Prolactin is secreted from the pituitary gland and other organs, as well as by cells such as lymphocytes. Prolactin has an immunostimulatory effect and is associated with autoimmune diseases that are characterised by abnormal B cell activation, such as systemic lupus erythematosus (SLE). Our aim was to determine if different splenic B cell subsets express the prolactin receptor and if the presence of prolactin influences these B cell subsets and correlates with development of lupus. Results Using real-time PCR and flow cytometry, we found that different subsets of immature (transitional) and mature (follicular, marginal zone) B cells express different levels of the prolactin receptor and are differentially affected by hyperprolactinaemia. We found that transitional B cells express the prolactin receptor at higher levels compared to mature B cells in C57BL/6 mice and the lupus-prone MRL/lpr and MRL mouse strains. Transitional-1 (T1) B cells showed a higher level of prolactin receptor expression in both MRL/lpr and MRL mice compared to C57BL/6 mice. Hyperprolactinaemia was induced using metoclopramide, which resulted in the development of early symptoms of SLE. We found that T1 B cells are the main targets of prolactin and that prolactin augments the absolute number of T1 B cells, which reflects the finding that this B cell subpopulation expresses the highest level of the prolactin receptor. Conclusions We found that all B cell subsets express the prolactin receptor but that transitional B cells showed the highest prolactin receptor expression levels. Hyperprolactinaemia in mice susceptible to lupus accelerated the disease and increased the absolute numbers of T1 and T3 B cells but not of mature B cells, suggesting a primary effect of prolactin on the early stages of B cell maturation in the spleen and a role of prolactin in B cell differentiation, contributing to SLE onset. PMID:22404893

  3. Influence of the number of vehicles in the emergence of sound events on the annoyance expressed - experimental study

    NASA Technical Reports Server (NTRS)

    Vallet, M.

    1982-01-01

    The acoustical index leg was studied to determine its accuracy in predicting annoyance from traffic noise. Annoyance was tested in experimental situations where the frequency of the number of heavy vehicles varied from 3 to 30 HV/30 min for different classes of the Leg level at 50, 55, 60 dB(A) of traffic noise. The results showed that: (1) for a constant Leg level the annoyance increases as a function of the number of HV up to a certain threshold at which the annoyance is stabilized; (2) for a constant frequency of passage of HV, the annoyance increases with the Leg level; (3) composite indexes of the type Leg + Log NHV, L1 + EMER or L1 + L10 give a predictive value greater than that of the Leg pr Log nHV taken alone.

  4. A series of medium and high copy number arabinose-inducible Escherichia coli expression vectors compatible with pBR322 and pACYC184.

    PubMed

    Chakravartty, Vandana; Cronan, John E

    2015-09-01

    The original pBAD24 plasmid and the derived lower copy number (the pBAD322 series) expression vectors have been widely used in Escherichia coli, Salmonella enterica, and related bacteria. However, a flexible pBAD expression system has been available only in pMB1 (ColE1) vectors. We report a series of pBAD vectors that replicate using the origin of plasmid RSF1030 that are compatible with pMB1 (ColE1) and p15A (pACYC) vectors. Both high (≥pBAD24) and medium (~pBAD322) copy number plasmids encoding resistance to ampicillin, chloramphenicol, kanamycin, tetracycline, spectinomycin/streptomycin, gentamycin, or trimethoprim are available.

  5. Expression of platelet-bound stromal-cell derived factor-1 (SDF-1) and number of CD34(+) progenitor cells in patients with congestive heart failure.

    PubMed

    Jorbenadze, Rezo; Schleicher, Erwin; Bigalke, Boris; Stellos, Konstantinos; Gawaz, Meinrad

    2014-01-01

    Platelet-bound stromal cell-derived factor-1 (SDF-1) plays a crucial role in attachment of circulating CD34(+) progenitor cells to the vascular wall, facilitating tissue healing after injury. However there is no evidence about expression of platelet-bound SDF-1 in patients with congestive heart failure (CHF). The aim of our study was to evaluate expression of platelet-bound SDF-1 and number of CD34(+) progenitor cells in patients with CHF. Forty-eight patients with idiopathic dilated cardiomyopathy (DCM) and 61 patients with ischaemic cardiomyopathy (ICM) were consecutively enrolled into the study. Blood taken from 109 consecutive patients was studied for surface expression of platelet-bound SDF-1 and number of CD34(+) progenitor cells by flow cytometry. The highest expression of platelet-bound SDF-1 was observed in patients with severe impairment of left ventricular systolic function compared with patients with mild or moderate impairment of left ventricular systolic function (mild vs. moderate vs. severe impairment of left ventricular systolic function: MFI ± SD: 35.6 ± 34 vs. 101.45 ± 73 vs. 124.86 ± 86.7, Kruskal-Wallis p < 0.001). Similar to platelet-bound SDF-1 number of CD34(+) progenitor cells was the highest in severe impairment of left ventricular systolic function (mild vs. moderate vs. severe impairment of left ventricular systolic function: mean ± SD: 260.4 ± 177.5 vs. 580.7 ± 340.5 vs. 640.82 ± 370.6, Kruskal-Wallis p < 0.001). Platelet-bound SDF-1 expression was associated with number of circulating CD34(+) progenitor cells (r = 0.454, p < 0.001) in patients with CHF. Expression of platelet-bound SDF-1 and number of CD34(+) cells were higher in patients with DCM compared with patients with ICM (p < 0.001 for both) and inversely correlated with age and aspirin therapy. Platelet-bound SDF-1 and CD34(+) progenitor cells are especially increased in patients with severe impairment of left

  6. Increased Uterine NK cell numbers and perforin expression during the implantation phase in IVF Cycles with GnRH Antagonist Protocol

    PubMed Central

    Xu, Bufang; Wang, Jingwen; Xia, Lan; Zhang, Dan; Wu, Xian; Zhang, Aijun

    2017-01-01

    GnRH antagonist negatively affects endometrial receptivity in in vitro fertilization (IVF) cycles, however, its underlying mechanism remains unclear. To explore its target molecules, we studied endometria in the window phase of fixed GnRH antagonist, low-dose flexible GnRH antagonist, GnRH agonist long protocol, and untreated control groups. There were 384 differentially expressed genes (DEGs) in the fixed antagonist group with greater than twofold expression change compared with the control group and 197 DEGs between the fixed antagonist and agonist groups, the majority of which were associated with the natural killer (NK) cell-mediated cytotoxicity pathway. We then analysed the PRF1 and FASLG protein levels. The perforin level were significantly higher in both the antagonist groups than in other two groups, and was higher in the fixed antagonist group. Similarly, the uNK cell numbers were higher in the antagonist groups, and the highest uNK cell number occurred in the fixed group (p < 0.05). No significant differences existed in the Fas ligand levels and apoptosis rates among the three treatment groups, but were higher in the treatment groups than the control group. Together, these data indicate that GnRH antagonist may increase the uNK cell numbers and perforin expression, and this effect may be dose-dependent. PMID:28045093

  7. ON THE ELECTRON-TO-NEUTRAL NUMBER DENSITY RATIO IN THE COMA OF COMET 67P/CHURYUMOV–GERASIMENKO: GUIDING EXPRESSION AND SOURCES FOR DEVIATIONS

    SciTech Connect

    Vigren, E.; Eriksson, A. I.; Edberg, N. J. T.; Odelstad, E.; Galand, M.; Schwartz, S. J.

    2015-10-10

    We compute partial photoionization frequencies of H{sub 2}O, CO{sub 2}, and CO, the major molecules in the coma of comet 67P/Churyumov–Gerasimenko, the target comet of the ongoing ESA Rosetta mission. Values are computed from Thermosphere Ionosphere Mesosphere Energy and Dynamics/Solar EUV Experiment solar EUV spectra for 2014 August 1, 2015 March 1, and for perihelion (2015 August, as based on prediction). From the varying total photoionization frequency of H{sub 2}O, as computed from 2014 August 1 to 2015 May 20, we derive a simple analytical expression for the electron-to-neutral number density ratio as a function of cometocentric and heliocentric distance. The underlying model assumes radial movement of the coma constituents and does not account for chemical loss or the presence of electric fields. We discuss various effects/processes that can cause deviations between values from the analytical expression and actual electron-to-neutral number density ratios. The analytical expression is thus not strictly meant as predicting the actual electron-to-neutral number density ratio, but is useful in comparisons with observations as an indicator of processes at play in the cometary coma.

  8. Extended Closed-form Expressions for the Robust Symmetrical Number System Dynamic Range and an Efficient Algorithm for its Computation

    DTIC Science & Technology

    2014-01-01

    Computer Engineering, Naval Postgraduate School, Monterey, CA; Email: twtedess@nps.edu. Copyright ( c ) 2013 IEEE. Personal use of this material is permitted...Report (SAR) 18. NUMBER OF PAGES 11 19a. NAME OF RESPONSIBLE PERSON a. REPORT unclassified b. ABSTRACT unclassified c . THIS PAGE...equivalent and mean that |f(x)| < c |g(x)| holds with some constant c , for x sufficiently large. Also, f = o(g) if limx→∞ f(x) g(x) = 0. For a positive

  9. Increased expression and copy number amplification of LINE-1 and SINE B1 retrotransposable elements in murine mammary carcinoma progression

    PubMed Central

    Gualtieri, Alberto; Andreola, Federica; Sciamanna, Ilaria; Sinibaldi-Vallebona, Paola; Serafino, Annalucia; Spadafora, Corrado

    2013-01-01

    In higher eukaryotic genomes, Long Interspersed Nuclear Element 1 (LINE-1) retrotransposons and endogenous retroviruses represent large families of repeated elements encoding reverse transcriptase (RT) proteins. Short Interspersed Nuclear Element B1 (SINE B1) retrotrasposons do not encode RT, but use LINE-1-derived RT for their retrotransposition. We previously showed that many cancer types have an abundant endogenous RT activity. Inhibition of that activity, by either RNA interference-dependent silencing of active LINE-1 elements or by RT inhibitory drugs, reduced proliferation and promoted differentiation in cancer cells, indicating that LINE-1-encoded RT is required for tumor progression. Using MMTV-PyVT transgenic mice as a well-defined model of breast cancer progression, we now report that both LINE-1 and SINE B1 retrotransposons are up-regulated at a very early stage of tumorigenesis; LINE-1-encoded RT product and enzymatic activity were detected in tumor tissues as early as stage 1, preceding the widespread appearance of histological alterations and specific cancer markers, and further increased in later progression stages, while neither was present in non-pathological breast tissues. Importantly, both LINE-1 and SINE B1 retrotransposon families undergo copy number amplification during tumor progression. These findings therefore indicate that RT activity is distinctive of breast cancer cells and that, furthermore, LINE-1 and SINE B1 undergo copy number amplification during cancer progression. PMID:24231191

  10. Increased expression and copy number amplification of LINE-1 and SINE B1 retrotransposable elements in murine mammary carcinoma progression.

    PubMed

    Gualtieri, Alberto; Andreola, Federica; Sciamanna, Ilaria; Sinibaldi-Vallebona, Paola; Serafino, Annalucia; Spadafora, Corrado

    2013-11-01

    In higher eukaryotic genomes, Long Interspersed Nuclear Element 1 (LINE-1) retrotransposons and endogenous retroviruses represent large families of repeated elements encoding reverse transcriptase (RT) proteins. Short Interspersed Nuclear Element B1 (SINE B1) retrotrasposons do not encode RT, but use LINE-1-derived RT for their retrotransposition. We previously showed that many cancer types have an abundant endogenous RT activity. Inhibition of that activity, by either RNA interference-dependent silencing of active LINE-1 elements or by RT inhibitory drugs, reduced proliferation and promoted differentiation in cancer cells, indicating that LINE-1-encoded RT is required for tumor progression. Using MMTV-PyVT transgenic mice as a well-defined model of breast cancer progression, we now report that both LINE-1 and SINE B1 retrotransposons are up-regulated at a very early stage of tumorigenesis; LINE-1-encoded RT product and enzymatic activity were detected in tumor tissues as early as stage 1, preceding the widespread appearance of histological alterations and specific cancer markers, and further increased in later progression stages, while neither was present in non-pathological breast tissues. Importantly, both LINE-1 and SINE B1 retrotransposon families undergo copy number amplification during tumor progression. These findings therefore indicate that RT activity is distinctive of breast cancer cells and that, furthermore, LINE-1 and SINE B1 undergo copy number amplification during cancer progression.

  11. Correlations of the cycle-averaged Nusselt number in a periodically reversing pipe flow

    SciTech Connect

    Xiaoguo Tang; Cheng, P. )

    1993-03-01

    An experiment has been initiated to study oscillatory heat transfer in a periodically reversing pipe flow. A multivariate statistical analysis was employed to obtain a correlation equation for the cycle-averaged Nusselt number in terms of the three similarity parameters: the Reynolds number, the dynamic Reynolds number, and the dimensionless fluid displacement.

  12. Age-dependent brain gene expression and copy number anomalies in autism suggest distinct pathological processes at young versus mature ages.

    PubMed

    Chow, Maggie L; Pramparo, Tiziano; Winn, Mary E; Barnes, Cynthia Carter; Li, Hai-Ri; Weiss, Lauren; Fan, Jian-Bing; Murray, Sarah; April, Craig; Belinson, Haim; Fu, Xiang-Dong; Wynshaw-Boris, Anthony; Schork, Nicholas J; Courchesne, Eric

    2012-01-01

    Autism is a highly heritable neurodevelopmental disorder, yet the genetic underpinnings of the disorder are largely unknown. Aberrant brain overgrowth is a well-replicated observation in the autism literature; but association, linkage, and expression studies have not identified genetic factors that explain this trajectory. Few studies have had sufficient statistical power to investigate whole-genome gene expression and genotypic variation in the autistic brain, especially in regions that display the greatest growth abnormality. Previous functional genomic studies have identified possible alterations in transcript levels of genes related to neurodevelopment and immune function. Thus, there is a need for genetic studies involving key brain regions to replicate these findings and solidify the role of particular functional pathways in autism pathogenesis. We therefore sought to identify abnormal brain gene expression patterns via whole-genome analysis of mRNA levels and copy number variations (CNVs) in autistic and control postmortem brain samples. We focused on prefrontal cortex tissue where excess neuron numbers and cortical overgrowth are pronounced in the majority of autism cases. We found evidence for dysregulation in pathways governing cell number, cortical patterning, and differentiation in young autistic prefrontal cortex. In contrast, adult autistic prefrontal cortex showed dysregulation of signaling and repair pathways. Genes regulating cell cycle also exhibited autism-specific CNVs in DNA derived from prefrontal cortex, and these genes were significantly associated with autism in genome-wide association study datasets. Our results suggest that CNVs and age-dependent gene expression changes in autism may reflect distinct pathological processes in the developing versus the mature autistic prefrontal cortex. Our results raise the hypothesis that genetic dysregulation in the developing brain leads to abnormal regional patterning, excess prefrontal neurons

  13. Age-Dependent Brain Gene Expression and Copy Number Anomalies in Autism Suggest Distinct Pathological Processes at Young Versus Mature Ages

    PubMed Central

    Winn, Mary E.; Barnes, Cynthia Carter; Li, Hai-Ri; Weiss, Lauren; Fan, Jian-Bing; Murray, Sarah; April, Craig; Belinson, Haim; Fu, Xiang-Dong; Wynshaw-Boris, Anthony; Schork, Nicholas J.; Courchesne, Eric

    2012-01-01

    Autism is a highly heritable neurodevelopmental disorder, yet the genetic underpinnings of the disorder are largely unknown. Aberrant brain overgrowth is a well-replicated observation in the autism literature; but association, linkage, and expression studies have not identified genetic factors that explain this trajectory. Few studies have had sufficient statistical power to investigate whole-genome gene expression and genotypic variation in the autistic brain, especially in regions that display the greatest growth abnormality. Previous functional genomic studies have identified possible alterations in transcript levels of genes related to neurodevelopment and immune function. Thus, there is a need for genetic studies involving key brain regions to replicate these findings and solidify the role of particular functional pathways in autism pathogenesis. We therefore sought to identify abnormal brain gene expression patterns via whole-genome analysis of mRNA levels and copy number variations (CNVs) in autistic and control postmortem brain samples. We focused on prefrontal cortex tissue where excess neuron numbers and cortical overgrowth are pronounced in the majority of autism cases. We found evidence for dysregulation in pathways governing cell number, cortical patterning, and differentiation in young autistic prefrontal cortex. In contrast, adult autistic prefrontal cortex showed dysregulation of signaling and repair pathways. Genes regulating cell cycle also exhibited autism-specific CNVs in DNA derived from prefrontal cortex, and these genes were significantly associated with autism in genome-wide association study datasets. Our results suggest that CNVs and age-dependent gene expression changes in autism may reflect distinct pathological processes in the developing versus the mature autistic prefrontal cortex. Our results raise the hypothesis that genetic dysregulation in the developing brain leads to abnormal regional patterning, excess prefrontal neurons

  14. Association of high HLA-E expression during acute cellular rejection and numbers of HLA class I leader peptide mismatches with reduced renal allograft survival.

    PubMed

    Guberina, Hana; Rebmann, Vera; Wagner, Bettina; da Silva Nardi, Fabiola; Dziallas, Phillip; Dolff, Sebastian; Bienholz, Anja; Wohlschlaeger, Jeremias; Bankfalvi, Agnes; Heinemann, Falko M; Witzke, Oliver; Zoet, Yvonne M; Claas, Frans H J; Horn, Peter A; Kribben, Andreas; Doxiadis, Ilias I N

    2017-03-01

    Non-classical Human Leukocyte Antigen (HLA)-E preferentially presents leader peptides derived from classical HLA-class I molecules. HLA-E can trigger opposed immune responses by interacting with inhibitory NKG2A or by activating NKG2C receptors on NK and T-cells. We studied the impact of HLA-E on renal allograft survival during acute cellular rejection. HLA-E expression was up-regulated in acute cellular rejection (ACR) biopsies (n=12) compared to biopsies from 13 renal allografts with no rejection-signs. HLA-E up-regulation was correlated with numbers of HLA-class I leader peptide mismatches (p=0.04). CD8+ and CD56+ infiltrating cells correlated with HLA-E expression (p<0.0001 and p=0.0009, respectively). Activating NKG2C receptor dominated on effector cells in biopsies and peripheral blood during ACR potentially allowing HLA-E-mediated immune activation. Moreover, HLA-E expression correlated with deterioration in renal allograft function (p<0.008) and reduced allograft survival (p=0.002). Our findings provide evidence that during renal allograft rejection HLA-E along with high numbers of mismatched HLA-class I leader peptides might represent additional targets for immune-activating responses.

  15. Mesodermal Gene Expression in the Acoel Isodiametra pulchra Indicates a Low Number of Mesodermal Cell Types and the Endomesodermal Origin of the Gonads

    PubMed Central

    Chiodin, Marta; Børve, Aina; Berezikov, Eugene; Ladurner, Peter; Martinez, Pedro; Hejnol, Andreas

    2013-01-01

    Acoelomorphs are bilaterally symmetric small marine worms that lack a coelom and possess a digestive system with a single opening. Two alternative phylogenetic positions of this group within the animal tree are currently debated. In one view, Acoelomorpha is the sister group to all remaining Bilateria and as such, is a morphologically simple stepping stone in bilaterian evolution. In the other, the group is a lineage within the Deuterostomia, and therefore, has derived a simple morphology from a more complex ancestor. Acoels and the closely related Nemertodermatida and Xenoturbellida, which together form the Acoelomorpha, possess a very limited number of cell types. To further investigate the diversity and origin of mesodermal cell types we describe the expression pattern of 12 orthologs of bilaterian mesodermal markers including Six1/2, Twist, FoxC, GATA4/5/6, in the acoel Isodiametra pulchra. All the genes are expressed in stem cells (neoblasts), gonads, and at least subsets of the acoel musculature. Most are expressed in endomesodermal compartments of I. pulchra developing embryos similar to what has been described in cnidarians. Our molecular evidence indicates a very limited number of mesodermal cell types and suggests an endomesodermal origin of the gonads and the stem cell system. We discuss our results in light of the two prevailing phylogenetic positions of Acoelomorpha. PMID:23405161

  16. An assessment of the malignant potential of actinic keratoses and Bowen's disease: p53 and PCNA expression pattern correlate with the number of desmosomes.

    PubMed

    Ramzi, Saeef Taher; Maruno, Motoyoshi; Khaskhely, Noor Mohammad; Khan, Mohammed Abul Kasem; Takamiyagi, Atsushi; Uezato, Hiroshi; Nonaka, Shigeo

    2002-09-01

    Actinic keratoses (AK) and Bowen's disease (BD), both intraepidermal skin tumors, have a potential progression to squamous cell carcinoma (SCC). To evaluate the malignant potential of AK and BD, the expression pattern of p53 protein and proliferating cell nuclear antigen (PCNA) were examined in five types of AK and BD by immunohistochemistry. The ultrastructural difference of epidermal cells between AK and BD lesions was investigated. In the study of p53 and PCNA expression, the atrophic and acantholytic types of AK showed lower positive rates compared to others. These two types did not demonstrate all layers expression pattern. The number of desmosomes of the epidermal cells was significantly reduced in BD, and in the bowenoid and hypertrophic types of AK compared with other types of AK The number of hemi-desmosomes showed greatest reduction in BD and the bowenoid type of AK On the basis of our findings, it is hypothesized that atrophic and acantholytic types of AK may have the lowest, and the bowenoid type of AK and BD may have the highest, malignant potential.

  17. Inhibitory transmission in locus coeruleus neurons expressing GABAA receptor epsilon subunit has a number of unique properties.

    PubMed

    Belujon, P; Baufreton, J; Grandoso, L; Boué-Grabot, E; Batten, T F C; Ugedo, L; Garret, M; Taupignon, A I

    2009-10-01

    Fast inhibitory synaptic transmission in the brain relies on ionotropic GABA(A) receptors (GABA(A)R). Eighteen genes code for GABA(A)R subunits, but little is known about the epsilon subunit. Our aim was to identify the synaptic transmission properties displayed by native receptors incorporating epsilon. Immunogold localization detected epsilon at synaptic sites on locus coeruleus (LC) neurons. In situ hybridization revealed prominent signals from epsilon, and mRNAs, some low beta1 and beta3 signals, and no gamma signal. Using in vivo extracellular and in vitro patch-clamp recordings in LC, we established that neuron firing rates, GABA-activated currents, and mIPSC charge were insensitive to the benzodiazepine flunitrazepam (FLU), in agreement with the characteristics of recombinant receptors including an epsilon subunit. Surprisingly, LC provided binding sites for benzodiazepines, and GABA-induced currents were potentiated by diazepam (DZP) in the micromolar range. A number of GABA(A)R ligands significantly potentiated GABA-induced currents, and zinc ions were only active at concentrations above 1 muM, further indicating that receptors were not composed of only alpha and beta subunits, but included an epsilon subunit. In contrast to recombinant receptors including an epsilon subunit, GABA(A)R in LC showed no agonist-independent opening. Finally, we determined that mIPSCs, as well as ensemble currents induced by ultra-fast GABA application, exhibited surprisingly slow rise times. Our work thus defines the signature of native GABA(A)R with a subunit composition including epsilon: differential sensitivity to FLU and DZP and slow rise time of currents. We further propose that alpha(3,) beta(1/3,) and epsilon subunits compose GABA(A)R in LC.

  18. A significant effect of the TSPY1 copy number on spermatogenesis efficiency and the phenotypic expression of the gr/gr deletion.

    PubMed

    Shen, Ying; Yan, Yuanlong; Liu, Yunqiang; Zhang, Sizhong; Yang, Dong; Zhang, Peng; Li, Lei; Wang, Yan; Ma, Yongxin; Tao, Dachang; Yang, Yuan

    2013-04-15

    AZFc deletions cause a significant phenotypic heterogeneity with respect to spermatogenesis; however, the reason for this is poorly understood. Recently, testis-specific protein Y-encoded 1 (TSPY1) copy number variation (CNV) was determined to be a potential genetic modifier of spermatogenesis. We performed a large-scale cohort study to investigate the effect of TSPY1 CNV on spermatogenesis and to elucidate the possible contribution of TSPY1 genetic variation to the phenotypic expression of AZFc deletions. Haplogrouping of the Y-chromosome and quantification of the TSPY1 copy number were performed in 2272 Han Chinese males with different spermatogenic statuses (704 males with the b2/b4 or gr/gr deletion and 1568 non-AZFc-deleted males). Our data revealed that the TSPY1 copy number distributions were significantly different among non-AZFc-deleted males with different spermatogenic phenotypes. Lower sperm production and an elevated risk of spermatogenic failure were observed in males with fewer than 21 TSPY1 copies and in those with more than 55 copies relative to men with 21-35 copies. Similar results were observed in males with the gr/gr deletion. These findings indicate that TSPY1 CNV affects an individual's susceptibility to spermatogenic failure by modulating the efficiency of spermatogenesis and strongly suggest that there is a significant quantity effect of the TSPY1 copy number on the phenotypic expression of the gr/gr deletion. To our knowledge, this CNV is the first independent genetic factor that has been clearly observed to influence the spermatogenic status of gr/gr deletion carriers. A combined genetic analysis of the TSPY1 copy number and the gr/gr deletion could inform the clinical counselling of infertile couples.

  19. Estimating the number of plasmids taken up by a eukaryotic cell during transfection and evidence that antisense RNA abolishes gene expression in Physarum polycephalum.

    PubMed

    Materna, Stefan C; Marwan, Wolfgang

    2005-02-01

    We have estimated the statistical distribution of the number of plasmids taken up by individual Jurkat lymphoma cells during electroporation in the presence of two plasmids, one encoding for yellow (EYFP) the other for cyan (ECFP) fluorescent protein. The plasmid concentration at which most of the cells take up only one plasmid or several molecules was determined by statistical analysis. We found that cells behaved slightly heterogeneous in plasmid uptake and describe how the homogeneity of a cell population can be quantified by Poisson statistics in order to identify experimental conditions that yield homogeneously transfection-competent cell populations. The experimental procedure worked out with Jurkat cells was applied to assay the effectiveness of antisense RNA in knocking down gene expression in Physarum polycephalum. Double transfection of flagellates with vectors encoding EYFP and antisense-EYFP revealed for the first time that gene expression can be suppressed by co-expression of antisense RNA in Physarum. Quantitative analysis revealed that one copy of antisense expressing gene per EYFP gene was sufficient to completely suppress formation of the EYFP protein in Physarum.

  20. Probiotic Treatment Decreases the Number of CD14-Expressing Cells in Porcine Milk Which Correlates with Several Intestinal Immune Parameters in the Piglets

    PubMed Central

    Scharek-Tedin, Lydia; Kreuzer-Redmer, Susanne; Twardziok, Sven Olaf; Siepert, Bianca; Klopfleisch, Robert; Tedin, Karsten; Zentek, Jürgen; Pieper, Robert

    2015-01-01

    Modulating the mucosal immune system of neonates by probiotic treatment of their mothers is a promising approach which can only be investigated through the use of animal models. Here, we used sows and their piglets to investigate the impact of a bacterial treatment on the sow’s milk and on the neonate piglet intestinal immune system. In previous experiments, feed supplementation of sows with the probiotic Enterococcus faecium NCIMB 10415 during pregnancy and lactation had been shown to affect intestinal microbiota and cytokine expression of the offspring during the suckling and weaning periods. We therefore investigated the composition of the milk from treated sows in comparison to samples from a control group. In treated sows, the amount of lactose increased, and the somatic cell numbers were reduced. In all milk samples, the percentage of cells expressing membranous CD14 (mCD14) was greater than the fractions of immune cells, indicating expression of mCD14 on mammary epithelial cells. However, in the milk of E. faecium-treated sows, mCD14+ cells were reduced. Furthermore, the number of CD14+ milk cells was positively correlated with the percentages of B cells and activated T cells in the ileal MLN of the piglets. This study provides evidence for the expression of mCD14 by the porcine mammary epithelium, and suggests an immunological effect of mCD14+ milk cells on the piglets’ intestinal immune system. Our study further suggests that mCD14+ mammary epithelial cell populations can be modulated by probiotic feed supplementation of the sow. PMID:25806034

  1. Decreased number of CD4{sup +} and CD8{sup +} T cells that express the interleukin-7 receptor in blood and tissues of SIV-infected macaques

    SciTech Connect

    Moniuszko, Marcin; Edghill-Smith, Yvette; Stevceva, Liljana; Tsai, Wen-Po . E-mail: franchig@mail.nih.gov

    2006-12-20

    Acute HIV/SIV (human/simian immunodeficiency virus) infection results in severe CD4{sup +} T cell depletion in lymphoid compartments. During the chronic phase of infection, CD4{sup +} T cell numbers rebound in blood but remain low in the gut-associated lymphoid tissue (GALT), even when viral replication is suppressed by antiretroviral therapy (ART). Thus, strategies to repopulate lymphoid compartments may ameliorate the clinical outcome of HIV/SIV infection. Interleukin (IL)-7 is a key cytokine for the maintenance of homeostatic proliferation of T cells. In HIV/SIV infection, IL-7 expression is increased, likely to compensate for T cell loss, suggesting that supraphysiological administration of IL-7 could provide additional benefit. However, the ability of T cells to respond to IL-7 is dependent on the level of expression of the IL-7 receptor (IL-7R) in T cells in various body compartments. In here, we investigated the proportion of IL-7R{sup +} T cells in blood, spleen, gut, and genitourinary tract of healthy and SIV-infected macaques with various degrees of CD4{sup +} T cell depletion. We found that the percentage of T cells expressing IL-7R was significantly lower in both CD4{sup +} and CD8{sup +} T cell subsets in SIV-infected macaques than in healthy animals and this decrease directly correlated with the CD4{sup +} T cell number. Importantly, the proportion of CD4{sup +} and CD8{sup +} T cells expressing IL-7R in blood paralleled that found in tissues. IL-7R{sup +} T cells within the SIV-specific CD8{sup +} T cells varied and were lowest in most tissues of viremic macaques, likely reflecting continuous antigen stimulation of effector cells.

  2. Potentialities of laser systems for remote sensing of the atmosphere at a wide variability of optical and physical characteristics: dimensionless-parametric modelling

    NASA Astrophysics Data System (ADS)

    Agishev, R. R.

    2017-02-01

    Within the framework of generalisation of different approaches to the modelling of atmospheric lidars, the methodology capabilities for dimensionless-parametric analysis are expanded. The developed approach simplifies the analysis of the signal-to-noise ratio and potential capabilities of existing and newly developed monitoring systems with a wide variability of atmospheric and optical conditions and a great variety of modern lidars. Its applicability to the problems of remote atmospheric sensing, environmental monitoring and lidar navigation in providing the eye safety, noise immunity and reliability is discussed.

  3. Role of Nine Repeating Sequences of the Mini-F Genome for Expression of F-Specific Incompatibility Phenotype and Copy Number Control

    PubMed Central

    Tsutsui, Hiroshi; Fujiyama, Asao; Murotsu, Tomoaki; Matsubara, Kenichi

    1983-01-01

    An autonomously replicating 2,248-base-pair DNA segment of the mini-F plasmid carries nine 19-base-pair repeating sequences. Five of the repeats are arranged in one direction and form the right cluster, whereas the remaining four repeats are arranged in the opposite direction and form the left cluster (Murotsu et al., Gene 15:257-271, 1981). Each cluster, cloned separately into the multicopy plasmid vector pBR322, exhibited a strong F-specific incompatibility phenotype (FIP). These clusters were thought to be responsible for the expression of IncB and IncC phenotypes, causing a switchoff function on mini-F replication. Mini-F DNA fragments containing two, three, or more than four repeats were inserted into pBR322. Cells carrying these recombinant plasmids exhibited, respectively, no, intermediate, and strong FIP intensity. Cloning of five repeats into pSC101, whose copy number is about 6 in contrast to 20 for pBR322, resulted in an FIP of intermediate intensity. Thus, the intensity of FIP reflects the dosage of repeats in a cell. The five repeats in the right cluster were eliminated from the mini-F derivative without impairing its autonomous-replicating ability (Bergquist et al., J. Bacteriol. 147:888-889, 1981; Kline and Palchavdhuri, Plasmid 4:281-289). Such deletion, however, caused a sixfold elevation of the copy number. When the eliminated cluster of repeats was reinserted in the derivative, the copy number was lowered to the original value, viz., 1 to 2. The position and orientation of this insertion was not important in the copy number control. Thus, the repeats are also related to copy number control. A model to account for the role of the repeating sequences in the control of copy number and FIP is discussed. PMID:6305917

  4. Porcine MAP3K5 analysis: molecular cloning, characterization, tissue expression pattern, and copy number variations associated with residual feed intake.

    PubMed

    Pu, L; Zhang, L C; Zhang, J S; Song, X; Wang, L G; Liang, J; Zhang, Y B; Liu, X; Yan, H; Zhang, T; Yue, J W; Li, N; Wu, Q Q; Wang, L X

    2016-08-12

    Mitogen-activated protein kinase kinase kinase 5 (MAP3K5) is essential for apoptosis, proliferation, differentiation, and immune responses, and is a candidate marker for residual feed intake (RFI) in pig. We cloned the full-length cDNA sequence of porcine MAP3K5 by rapid-amplification of cDNA ends. The 5451-bp gene contains a 5'-untranslated region (UTR) (718 bp), a coding region (3738 bp), and a 3'-UTR (995 bp), and encodes a peptide of 1245 amino acids, which shares 97, 99, 97, 93, 91, and 84% sequence identity with cattle, sheep, human, mouse, chicken, and zebrafish MAP3K5, respectively. The deduced MAP3K5 protein sequence contains two conserved domains: a DUF4071 domain and a protein kinase domain. Phylogenetic analysis showed that porcine MAP3K5 forms a separate branch to vicugna and camel MAP3K5. Tissue expression analysis using real-time quantitative polymerase chain reaction (qRT-PCR) revealed that MAP3K5 was expressed in the heart, liver, spleen, lung, kidney, muscle, fat, pancrea, ileum, and stomach tissues. Copy number variation was detected for porcine MAP3K5 and validated by qRT-PCR. Furthermore, a significant increase in average copy number was detected in the low RFI group when compared to the high RFI group in a Duroc pig population. These results provide useful information regarding the influence of MAP3K5 on RFI in pigs.

  5. Analyses of chromosome copy number and expression level of four genes in the ciliate Chilodonella uncinata reveal a complex pattern that suggests epigenetic regulation.

    PubMed

    Bellec, Laure; Katz, Laura A

    2012-08-10

    Chilodonella uncinata, like all ciliates, contains two distinct nuclei in every cell: a germline micronucleus and a somatic macronucleus. The macronucleus develops from the zygotic nucleus through a series of chromosomal rearrangements. Macronuclear development in C. uncinata yields a nucleus with highly amplified gene-sized chromosomes. The macronucleus is transcriptionally active during vegetative growth while there is no expression in the micronucleus except during a brief period following conjugation. Gene family evolution in ciliates occurs through complex processes including gene duplication and an alternative processing of scrambled genes. Here we use quantitative PCR to compare relative expression levels of eight genes (SSU-rDNA, actin, α-tubulin and five β-tubulin sequences) to their abundance as macronuclear chromosomes. We show that three strains of the morphospecies C. uncinata share similar patterns across all loci. For example, we find an inverse correlation among five β-tubulin genes whereby the more abundant macronuclear chromosomes have lower levels of expression compared to less abundant chromosomes. We discuss the implication of our findings, which suggest that epigenetic mechanisms maintain chromosome copy number in C. uncinata.

  6. Dimensionless parameterization of lidar for laser remote sensing of the atmosphere and its application to systems with SiPM and PMT detectors.

    PubMed

    Agishev, Ravil; Comerón, Adolfo; Rodriguez, Alejandro; Sicard, Michaël

    2014-05-20

    In this paper, we show a renewed approach to the generalized methodology for atmospheric lidar assessment, which uses the dimensionless parameterization as a core component. It is based on a series of our previous works where the problem of universal parameterization over many lidar technologies were described and analyzed from different points of view. The modernized dimensionless parameterization concept applied to relatively new silicon photomultiplier detectors (SiPMs) and traditional photomultiplier (PMT) detectors for remote-sensing instruments allowed predicting the lidar receiver performance with sky background available. The renewed approach can be widely used to evaluate a broad range of lidar system capabilities for a variety of lidar remote-sensing applications as well as to serve as a basis for selection of appropriate lidar system parameters for a specific application. Such a modernized methodology provides a generalized, uniform, and objective approach for evaluation of a broad range of lidar types and systems (aerosol, Raman, DIAL) operating on different targets (backscatter or topographic) and under intense sky background conditions. It can be used within the lidar community to compare different lidar instruments.

  7. Relativistic theory of tidal Love numbers

    SciTech Connect

    Binnington, Taylor; Poisson, Eric

    2009-10-15

    In Newtonian gravitational theory, a tidal Love number relates the mass multipole moment created by tidal forces on a spherical body to the applied tidal field. The Love number is dimensionless, and it encodes information about the body's internal structure. We present a relativistic theory of Love numbers, which applies to compact bodies with strong internal gravities; the theory extends and completes a recent work by Flanagan and Hinderer, which revealed that the tidal Love number of a neutron star can be measured by Earth-based gravitational-wave detectors. We consider a spherical body deformed by an external tidal field, and provide precise and meaningful definitions for electric-type and magnetic-type Love numbers; and these are computed for polytropic equations of state. The theory applies to black holes as well, and we find that the relativistic Love numbers of a nonrotating black hole are all zero.

  8. Coordinate regulation of glucose transporter function, number, and gene expression by insulin and sulfonylureas in L6 rat skeletal muscle cells.

    PubMed Central

    Wang, P H; Moller, D; Flier, J S; Nayak, R C; Smith, R J

    1989-01-01

    The extrapancreatic actions of sulfonylureas on the glucose transport system were studied in the L6 line of cultured rat skeletal muscle cells. Insulin (10(-7) M) increased 2-deoxyglucose uptake in differentiated L6 myotubes by 30-40% after 8 h of incubation. The sulfonylurea tolazamide (0.6 mg/ml, 22 h) had no effect on glucose uptake in the absence of insulin, but increased insulin-stimulated 2-deoxyglucose uptake twofold. The total cellular content of glucose transporters was assessed with a monoclonal anti-transporter antibody by a solid-phase ELISA method. Insulin (8 h) increased the quantity of glucose transporters, with a maximal twofold increase at 10(-7) M and a dose-response curve similar to that for insulin stimulation of glucose uptake. In spite of its lack of effect on glucose uptake, tolazamide alone (0.6 mg/ml) increased the cellular content of transporters by 70%. The effects of insulin and tolazamide on transporter gene expression were studied with probes derived from Hep G2 glucose transporter cDNA. Insulin increased the transporter mRNA level 1.7-fold, tolazamide increased it 1.5-fold, and the combination of insulin and tolazamide increased transporter mRNA 3-fold. It is concluded that sulfonylureas, together with insulin, enhance glucose uptake in L6 skeletal muscle cells by increasing the number of functioning glucose transport molecules. The long-term regulation of the glucose transport system in skeletal muscle by insulin and sulfonylureas in vivo may involve similar changes in transporter function, number, and gene expression. Images PMID:2661591

  9. Development of a fed-batch fermentation process to overproduce phosphoenolpyruvate carboxykinase using an expression vector with promoter and plasmid copy number controllable by heat.

    PubMed

    Chao, Yun-Peng; Chern, Jong-Tzer; Lin, Wei Shing; Wang, Zei Wen

    2003-11-20

    To effectively achieve tight regulation and high-level expression of cloned genes, a novel expression plasmid has been developed to contain the promoter and allow the plasmid copy number to be controlled by heat. The feasibility of the plasmid was tested by overproducing the pck gene product (Pck), a protein responsible for cell growth on gluconeogenic carbons and with potential toxicity. By fusing the pck gene with the promoter on the plasmid, the Escherichia coli strain harboring the composite vector was shown to produce various amounts of Pck in response to different degrees of heat shock. With the use of a 30 degrees -->41 degrees C stepwise upshift, the shake-flask culture of recombinant cells enabled production of maximal Pck in soluble form accounting for 20% of total cell protein. In sharp contrast, Pck production was undetectable in the uninduced cell, and this was further confirmed by the failed growth of strain JCL1305, defective in the essential genes for gluconeogenesis, carrying the composite vector on succinate at 30 degrees C. By exploiting the fed-batch fermentation approach, the recombinant cell batch initially kept at 30 degrees C in a lab-scale fermentor was exposed to 41 degrees C for 2 h at the batch fermentation stage, followed by a reduction in temperature to 37 degrees C throughout the remainder of the culturing process. Consequently, this resulted in Pck production equivalent to 15% of total cell protein. The total Pck yield thus calculated was amplified 1880-fold over that obtained at the shake-flask scale. Overall, there is great promise for this expression system due to its tight control, high production, simple thermomodulation, and feasible scale-up of recombinant proteins.

  10. Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer.

    PubMed

    Bergamaschi, Anna; Kim, Young H; Wang, Pei; Sørlie, Therese; Hernandez-Boussard, Tina; Lonning, Per E; Tibshirani, Robert; Børresen-Dale, Anne-Lise; Pollack, Jonathan R

    2006-11-01

    Breast cancer is a leading cause of cancer-death among women, where the clinicopathological features of tumors are used to prognosticate and guide therapy. DNA copy number alterations (CNAs), which occur frequently in breast cancer and define key pathogenetic events, are also potentially useful prognostic or predictive factors. Here, we report a genome-wide array-based comparative genomic hybridization (array CGH) survey of CNAs in 89 breast tumors from a patient cohort with locally advanced disease. Statistical analysis links distinct cytoband loci harboring CNAs to specific clinicopathological parameters, including tumor grade, estrogen receptor status, presence of TP53 mutation, and overall survival. Notably, distinct spectra of CNAs also underlie the different subtypes of breast cancer recently defined by expression-profiling, implying these subtypes develop along distinct genetic pathways. In addition, higher numbers of gains/losses are associated with the "basal-like" tumor subtype, while high-level DNA amplification is more frequent in "luminal-B" subtype tumors, suggesting also that distinct mechanisms of genomic instability might underlie their pathogenesis. The identified CNAs may provide a basis for improved patient prognostication, as well as a starting point to define important genes to further our understanding of the pathobiology of breast cancer. This article contains Supplementary Material available at http://www.interscience.wiley.com/jpages/1045-2257/suppmat

  11. Express

    Integrated Risk Information System (IRIS)

    Express ; CASRN 101200 - 48 - 0 Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard Assessments for Noncarcinogenic Effect

  12. Series of Reciprocal Triangular Numbers

    ERIC Educational Resources Information Center

    Bruckman, Paul; Dence, Joseph B.; Dence, Thomas P.; Young, Justin

    2013-01-01

    Reciprocal triangular numbers have appeared in series since the very first infinite series were summed. Here we attack a number of subseries of the reciprocal triangular numbers by methodically expressing them as integrals.

  13. Convoluted Convolved Fibonacci Numbers

    NASA Astrophysics Data System (ADS)

    Moree, Pieter

    2004-04-01

    The convolved Fibonacci numbers F_j^(r) are defined by (1-x-x^2)^{-r}=sum_{j>= 0}F_{j+1}^(r)x^j. In this note we consider some related numbers that can be expressed in terms of convolved Fibonacci numbers. These numbers appear in the numerical evaluation of a constant arising in the study of the average density of elements in a finite field having order congruent to a (mod d). We derive a formula expressing these numbers in terms of ordinary Fibonacci and Lucas numbers. The non-negativity of these numbers can be inferred from Witt's dimension formula for free Lie algebras. This note is a case study of the transform 1/n sum_{d|}n mu(d)f(z^d)^{n/d} (with f any formal series), which was introduced and studied in a companion paper by Moree.

  14. Optimal Strouhal number for swimming animals

    NASA Astrophysics Data System (ADS)

    Eloy, Christophe

    2012-04-01

    To evaluate the swimming performances of aquatic animals, an important dimensionless quantity is the Strouhal number, St=fA/U, with f the tail-beat frequency, A the peak-to-peak tail amplitude, and U the swimming velocity. Experiments with flapping foils have exhibited maximum propulsive efficiency in the interval 0.25number increases from 0.15 to 0.8 for animals spanning from the largest cetaceans to the smallest tadpoles. To assess the validity of this model, the swimming kinematics of 53 different species of aquatic animals have been compiled from the literature and it shows that their Strouhal numbers are consistently near the predicted optimum.

  15. Number relativity

    NASA Astrophysics Data System (ADS)

    Shin, Philip

    Number relativity 1.Every equation of the relativity is just the way to understand through to solve one question of the math problem. We just add the hypothesis into the number. 2. Sequence of number is the machine physics for software(computer) as the number order is program equation as calculator. 3. When zero is denominator, it is not existing as it is doing something by nothing. So nothing means time as we put zero denominator into time. My personal physics imagine.

  16. Evaluation of gene expression and DNA copy number profiles of adipose tissue-derived stromal cells and consecutive neurosphere-like cells generated from dogs with naturally occurring spinal cord injury.

    PubMed

    Lim, Ji-Hey; Koh, Sehwon; Thomas, Rachael; Breen, Matthew; Olby, Natasha J

    2017-03-01

    OBJECTIVE To evaluate gene expression and DNA copy number in adipose tissue-derived stromal cells (ADSCs) and in ADSC-derived neurosphere-like cell clusters (ADSC-NSCs) generated from tissues of chronically paraplegic dogs. ANIMALS 14 client-owned paraplegic dogs. PROCEDURES Dorsal subcutaneous adipose tissue (< 1 cm(3)) was collected under general anesthesia; ADSCs were isolated and cultured. Third-passage ADSCs were cultured in neural cell induction medium to generate ADSC-NSCs. Relative gene expression of mesenchymal cell surface marker CD90 and neural progenitor marker nestin was assessed in ADSCs and ADSC-NSCs from 3 dogs by quantitative real-time PCR assay; expression of these and various neural lineage genes was evaluated for the same dogs by reverse transcription PCR assay. Percentages of cells expressing CD90, nestin, glial fibrillary acidic protein (GFAP), and tubulin β 3 class III (TUJ1) proteins were determined by flow cytometry for all dogs. The DNA copy number stability (in samples from 6 dogs) and neural cell differentiation (14 dogs) were assessed with array-comparative genomic hybridization analysis and immunocytochemical evaluation, respectively. RESULTS ADSCs and ADSC-NSCs expressed neural cell progenitor and differentiation markers; GFAP and microtubule-associated protein 2 were expressed by ADSC-NSCs but not ADSCs. Relative gene expression of CD90 and nestin was subjectively higher in ADSC-NSCs than in ADSCs. Percentages of ADSC-NSCs expressing nestin, GFAP, and TUJ1 proteins were substantially higher than those of ADSCs. Cells expressing neuronal and glial markers were generated from ADSC-NSCs and had no DNA copy number instability detectable by the methods used. CONCLUSIONS AND CLINICAL RELEVANCE Results suggested ADSCs can potentially be a safe and clinically relevant autologous source for canine neural progenitor cells. Further research is needed to verify these findings.

  17. Global and pedestal confinement and pedestal structure in dimensionless collisionality scans of low-triangularity H-mode plasmas in JET-ILW

    NASA Astrophysics Data System (ADS)

    Frassinetti, L.; Beurskens, M. N. A.; Saarelma, S.; Boom, J. E.; Delabie, E.; Flanagan, J.; Kempenaars, M.; Giroud, C.; Lomas, P.; Meneses, L.; Maggi, C. S.; Menmuir, S.; Nunes, I.; Rimini, F.; Stefanikova, E.; Urano, H.; Verdoolaege, G.; Contributors, JET

    2017-01-01

    A dimensionless collisionality scan in low-triangularity plasmas in the Joint European Torus with the ITER-like wall (JET-ILW) has been performed. The increase of the normalized energy confinement (defined as the ratio between thermal energy confinement and Bohm confinement time) with decreasing collisionality is observed. Moreover, at low collisionality, a confinement factor H98, comparable to JET-C, is achieved. At high collisionality, the low normalized confinement is related to a degraded pedestal stability and a reduction in the density-profile peaking. The increase of normalized energy confinement is due to both an increase in the pedestal and in the core regions. The improvement in the pedestal is related to the increase of the stability. The improvement in the core is driven by (i) the core temperature increase via the temperature-profile stiffness and by (ii) the density-peaking increase driven by the low collisionality. Pedestal stability analysis performed with the ELITE (edge-localized instabilities in tokamak equilibria) code has a reasonable qualitative agreement with the experimental results. An improvement of the pedestal stability with decreasing collisionality is observed. The improvement is ascribed to the reduction of the pedestal width, the increase of the bootstrap current and the reduction of the relative shift between the positions of the pedestal density and pedestal temperature. The EPED1 model predictions for the pedestal pressure height are qualitatively well correlated with the experimental results. Quantitatively, EPED1 overestimates the experimental pressure by 15-35%. In terms of the pedestal width, a correct agreement (within 10-15%) between the EPED1 and the experimental width is found at low collisionality. The experimental pedestal width increases with collisionality. Nonetheless, an extrapolation to low-collisionality values suggests that the width predictions from the KBM constraint are reasonable for ITER.

  18. Number Time

    ERIC Educational Resources Information Center

    Herrera, Terese A.

    2004-01-01

    This article features Number Time, a site developed by the British Broadcasting Corporation (BBC) for young mathematics learners, located at www.bbc.co.uk/schools/numbertime. The site uses interactive animation to help children in pre-K through grade 2 understand and practice number basics. Users will find online games, videos that tell number…

  19. RhoE deficiency alters postnatal subventricular zone development and the number of calbindin-expressing neurons in the olfactory bulb of mouse.

    PubMed

    Ballester-Lurbe, Begoña; González-Granero, Susana; Mocholí, Enric; Poch, Enric; García-Manzanares, María; Dierssen, Mara; Pérez-Roger, Ignacio; García-Verdugo, José M; Guasch, Rosa M; Terrado, José

    2015-11-01

    The subventricular zone represents an important reservoir of progenitor cells in the adult brain. Cells from the subventricular zone migrate along the rostral migratory stream and reach the olfactory bulb, where they originate different types of interneurons. In this work, we have analyzed the role of the small GTPase RhoE/Rnd3 in subventricular zone cell development using mice-lacking RhoE expression. Our results show that RhoE null mice display a remarkable postnatal broadening of the subventricular zone and caudal rostral migratory stream. This broadening was caused by an increase in progenitor proliferation, observed in the second postnatal week but not before, and by an altered migration of the cells, which appeared in disorganized cell arrangements that impaired the appropriate contact between cells in the rostral migratory stream. In addition, the thickness of the granule cell layer in the olfactory bulb was reduced, although the density of granule cells did not differ between wild-type and RhoE null mice. Finally, the lack of RhoE expression affected the olfactory glomeruli inducing a severe reduction of calbindin-expressing interneurons in the periglomerular layer. This was already evident in the newborns and even more pronounced 15 days later when RhoE null mice displayed 89% less cells than control mice. Our results indicate that RhoE has pleiotropic functions on subventricular cells because of its role in proliferation and tangential migration, affecting mainly the development of calbindin-expressing cells in the olfactory bulb.

  20. Application of dimensionless sediment rating curves to predict suspended-sediment concentrations, bedload, and annual sediment loads for rivers in Minnesota

    USGS Publications Warehouse

    Ellison, Christopher A.; Groten, Joel T.; Lorenz, David L.; Koller, Karl S.

    2016-10-27

    Consistent and reliable sediment data are needed by Federal, State, and local government agencies responsible for monitoring water quality, planning river restoration, quantifying sediment budgets, and evaluating the effectiveness of sediment reduction strategies. Heightened concerns about excessive sediment in rivers and the challenge to reduce costs and eliminate data gaps has guided Federal and State interests in pursuing alternative methods for measuring suspended and bedload sediment. Simple and dependable data collection and estimation techniques are needed to generate hydraulic and water-quality information for areas where data are unavailable or difficult to collect.The U.S. Geological Survey, in cooperation with the Minnesota Pollution Control Agency and the Minnesota Department of Natural Resources, completed a study to evaluate the use of dimensionless sediment rating curves (DSRCs) to accurately predict suspended-sediment concentrations (SSCs), bedload, and annual sediment loads for selected rivers and streams in Minnesota based on data collected during 2007 through 2013. This study included the application of DSRC models developed for a small group of streams located in the San Juan River Basin near Pagosa Springs in southwestern Colorado to rivers in Minnesota. Regionally based DSRC models for Minnesota also were developed and compared to DSRC models from Pagosa Springs, Colorado, to evaluate which model provided more accurate predictions of SSCs and bedload in Minnesota.Multiple measures of goodness-of-fit were developed to assess the effectiveness of DSRC models in predicting SSC and bedload for rivers in Minnesota. More than 600 dimensionless ratio values of SSC, bedload, and streamflow were evaluated and delineated according to Pfankuch stream stability categories of “good/fair” and “poor” to develop four Minnesota-based DSRC models. The basis for Pagosa Springs and Minnesota DSRC model effectiveness was founded on measures of goodness

  1. Numbers, Please!

    ERIC Educational Resources Information Center

    Thelin, John R.

    2013-01-01

    What topic would you choose if you had the luxury of writing forever? In this article, John Thelin provides his response: He would opt to write about the history of higher education in a way that relies on quantitative data. "Numbers, please!" is his research request in taking on a longitudinal study of colleges and universities over…

  2. Numbers Sense

    ERIC Educational Resources Information Center

    Kathotia, Vinay

    2009-01-01

    This article reports on work undertaken by schools as part of Qualifications and Curriculum Authority's (QCA's) "Engaging mathematics for all learners" project. The goal was to use in the classroom, materials and approaches from a Royal Institution (Ri) Year 10 master-class, "Number Sense", which was inspired by examples from…

  3. Negative Numbers

    ERIC Educational Resources Information Center

    Galbraith, Mary J.

    1974-01-01

    Examination of models for representing integers demonstrates that formal operational thought is required for establishing the operations on integers. Advocated is the use of many models for introducing negative numbers but, apart from addition, it is recommended that operations on integers be delayed until the formal operations stage. (JP)

  4. Tandem Repeats, High Copy Number and Remarkable Diel Expression Rhythm of Form II RuBisCO in Prorocentrum donghaiense (Dinophyceae)

    PubMed Central

    Shi, Xinguo; Zhang, Huan; Lin, Senjie

    2013-01-01

    Gene structure and expression regulation of form II RuBisCO (rbcII) in dinoflagellates are still poorly understood. Here we isolated this gene (Pdrbc) and investigated its diel expression pattern in a harmful algal bloom forming dinoflagellate Prorocentrum donghaiense. We obtained cDNA sequences with triple tandem repeats of the coding unit (CU); the 5′ region has the sequence of a typical dinoflagellate plastid gene, encoding an N-terminus with two transmembrane regions separated by a plastid transit peptide. The CUs (1,455 bp except 1464 bp in last CU) are connected through a 63 bp spacer. Phylogenetic analysis showed that rbcII CUs within species formed monophyletic clusters, indicative of intraspecific gene duplication or purifying evolution. Using quantitative PCR (qPCR) we estimated 117±40 CUs of Pdrbc in the P. donghaiense genome. Although it is commonly believed that most dinoflagellate genes lack transcriptional regulation, our RT-qPCR analysis on synchronized cultures revealed remarkable diel rhythm of Pdrbc expression, showing significant correlations of transcript abundance with the timing of the dark-to-light transition and cell cycle G2M-phase. When the cultures were shifted to continuous light, Pdrbc expression remained significantly correlated with the G2M-phase. Under continuous darkness the cell cycle was arrested at the G1 phase, and the rhythm of Pdrbc transcription disappeared. Our results suggest that dinoflagellate rbcII 1) undergoes duplication or sequence purification within species, 2) is organized in tandem arrays in most species probably to facilitate efficient translation and import of the encoded enzyme, and 3) is regulated transcriptionally in a cell cycle-dependent fashion at least in some dinoflagellates. PMID:23976999

  5. Enhanced expression of trim14 gene suppressed Sindbis virus reproduction and modulated the transcription of a large number of genes of innate immunity.

    PubMed

    Nenasheva, V V; Kovaleva, G V; Uryvaev, L V; Ionova, K S; Dedova, A V; Vorkunova, G K; Chernyshenko, S V; Khaidarova, N V; Tarantul, V Z

    2015-07-01

    In the present research, we have studied an influence of enhanced expression TRIM14 on alphavirus Sindbis (SINV, Togaviridae family) infection. In the HEK293 cells transfected with human trim14 gene (HEK-trim14), SINV yield after infection was decreased 1000-10,000 times (3-4 lg of TCD50/ml) at 24 h p.i. and considerably less (1-2 lg of TCD50/ml) at 48 h p.i. Analysis of the expression of 43 genes directly or indirectly involved in innate immune machine in HEK-trim14 non-infected cells comparing with the control (non-transfected) HEK293 cells revealed that stable trim14 transfection in HEK293 cells caused increased transcription of 18 genes (ifna, il6 (ifnβ2), isg15, raf-1, NF-kB (nf-kb1, rela, nf-kb2, relb), grb2, grb3-3, traf3ip2, junB, c-myb, pu.1, akt1, tyk2, erk2, mek2) and lowered transcription of 3 genes (ifnγ, gata1, il-17a). The similar patterns of genes expression observe in SINV-infected non-transfected HEK293 cells. However, SINV infection of HEK-trim14 cells caused inhibition of the most interferon cascade genes as well as subunits of transcription factor NF-κB. Thus, stable enhanced expression of trim14 gene in cells activates the transcription of many immunity genes and suppresses the SINV reproduction, but SINV infection of HEK-trim14 cells promotes inhibition of some genes involved in innate immune system.

  6. Developing Meaning for Algebraic Procedures: An Exploration of the Connections Undergraduate Students Make between Algebraic Rational Expressions and Basic Number Properties

    ERIC Educational Resources Information Center

    Yantz, Jennifer

    2013-01-01

    The attainment and retention of later algebra skills in high school has been identified as a factor significantly impacting the postsecondary success of students majoring in STEM fields. Researchers maintain that learners develop meaning for algebraic procedures by forming connections to the basic number system properties. The present study…

  7. Systematic Review of Micro-RNA Expression in Pre-Eclampsia Identifies a Number of Common Pathways Associated with the Disease

    PubMed Central

    Sheikh, Adam M.; Currie, Gemma; Delles, Christian

    2016-01-01

    Background Pre-eclampsia (PE) is a complex, multi-systemic condition of pregnancy which greatly impacts maternal and perinatal morbidity and mortality. MicroRNAs (miRs) are differentially expressed in PE and may be important in helping to understand the condition and its pathogenesis. Methods Case-control studies investigating expression of miRs in PE were collected through a systematic literature search. Data was extracted and compared from 58 studies to identify the most promising miRs associated with PE pathogenesis and identify areas of methodology which could account for often conflicting results. Results Some of the most frequently differentially expressed miRs in PE include miR-210, miR-223 and miR-126/126* which associate strongly with the etiological domains of hypoxia, immunology and angiogenesis. Members of the miR-515 family belonging to the imprinted chromosome 19 miR cluster with putative roles in trophoblast invasion were also found to be differentially expressed. Certain miRs appear to associate with more severe forms of PE such as miR-210 and the immune-related miR-181a and miR-15 families. Patterns of miR expression may help pinpoint key pathways (e.g. IL-6/miR-223/STAT3) and aid in untangling the heterogeneous nature of PE. The detectable presence of many PE-associated miRs in antenatal circulatory samples suggests their usefulness as predictive biomarkers. Further progress in ascertaining the clinical value of miRs and in understanding how they might contribute to pathogenesis is predicated upon resolving current methodological challenges in studies. These include differences in diagnostic criteria, cohort characteristics, sampling technique, RNA isolation and platform-dependent variation in miR profiling. Conclusion Reviewing studies of PE-associated miRs has revealed their potential as informants of underlying target genes and pathways relating to PE pathogenesis. However, the incongruity in results across current studies hampers their

  8. Generalized Knudsen Number for Unsteady Fluid Flow

    NASA Astrophysics Data System (ADS)

    Kara, V.; Yakhot, V.; Ekinci, K. L.

    2017-02-01

    We explore the scaling behavior of an unsteady flow that is generated by an oscillating body of finite size in a gas. If the gas is gradually rarefied, the Navier-Stokes equations begin to fail and a kinetic description of the flow becomes more appropriate. The failure of the Navier-Stokes equations can be thought to take place via two different physical mechanisms: either the continuum hypothesis breaks down as a result of a finite size effect or local equilibrium is violated due to the high rate of strain. By independently tuning the relevant linear dimension and the frequency of the oscillating body, we can experimentally observe these two different physical mechanisms. All the experimental data, however, can be collapsed using a single dimensionless scaling parameter that combines the relevant linear dimension and the frequency of the body. This proposed Knudsen number for an unsteady flow is rooted in a fundamental symmetry principle, namely, Galilean invariance.

  9. Magellan: a web based system for the integrated analysis of heterogeneous biological data and annotations; application to DNA copy number and expression data in ovarian cancer.

    PubMed

    Kingsley, Chris B; Kuo, Wen-Lin; Polikoff, Daniel; Berchuck, Andy; Gray, Joe W; Jain, Ajay N

    2007-02-05

    Recent advances in high throughput biological methods allow researchers to generate enormous amounts of data from a single experiment. In order to extract meaningful conclusions from this tidal wave of data, it will be necessary to develop analytical methods of sufficient power and utility. It is particularly important that biologists themselves be able to perform many of these analyses, such that their background knowledge of the experimental system under study can be used to interpret results and direct further inquiries. We have developed a web-based system, Magellan, which allows the upload, storage, and analysis of multivariate data and textual or numerical annotations. Data and annotations are treated as abstract entities, to maximize the different types of information the system can store and analyze. Annotations can be used in analyses/visualizations, as a means of subsetting data to reduce dimensionality, or as a means of projecting variables from one data type or data set to another. Analytical methods are deployed within Magellan such that new functionalities can be added in a straightforward fashion. Using Magellan, we performed an integrated analysis of genome-wide comparative genomic hybridization (CGH), mRNA expression, and clinical data from ovarian tumors. Analyses included the use of permutation-based methods to identify genes whose mRNA expression levels correlated with patient survival, a nearest neighbor classifier to predict patient survival from CGH data, and curated annotations such as genomic position and derived annotations such as statistical computations to explore the quantitative relationship between CGH and mRNA expression data.

  10. Selective populations of hippocampal interneurons express ErbB4 and their number and distribution is altered in ErbB4 knockout mice

    PubMed Central

    Neddens, Jörg; Buonanno, Andrés

    2010-01-01

    Neuregulins (NRGs) are ligands of ErbB receptor tyrosine kinases. The NRG1-ErbB4 pathway has been shown to modulate hippocampal synaptic plasticity and network oscillations in the adult rodent brain. In order to identify cells that mediate these effects here we determine the expression pattern of ErbB4 in four functionally distinct classes of interneurons that represent the majority of all inhibitory neurons in the hippocampus. Based on data from 15 mice and 25,000 cells, we show that ErbB4 is expressed in cells that are positive for cholecystokinin (CCK, 54%), parvalbumin (PV, 42%), or neuronal nitric oxide synthase (nNOS, 39%) in a layer-specific and region-specific manner, whereas cells expressing somatostatin (SOM) are rarely immunoreactive for ErbB4 (1%). We next compared the numerical density (cells/mm3) and the distribution of interneurons between ErbB4−/− mice and wildtype controls. Based on data from 25 mice and 56,000 cells, we detected reductions of PV-positive and nNOS-positive cells in knockouts (−24% and −27%, respectively) but only a minor reduction of CCK-positive cells; no changes in SOM-positive cells were observed. The overall reduction of interneurons was verified by quantification of GAD67-immunoreactive cells (−24% in ErbB4−/− mice). The reduction of interneurons along the dorsoventral axis was more severe in intermediate and ventral portions than in the dorsal hippocampus, and regional reductions occurred in the CA1-3 regions and subiculum, whereas we found no significant changes in the dentate gyrus. The expression by different populations of interneurons suggests that ErbB4 can modulate several microcircuits within the hippocampus and mediate the previously reported effects of NRG1 on network oscillations and synaptic plasticity. The selective reduction of GABAergic cells in ErbB4−/− mice is consistent with the role of NRG-ErbB4 signaling in the generation and migration of interneurons during development, and with neuronal

  11. Testosterone and trenbolone enanthate increase mature myostatin protein expression despite increasing skeletal muscle hypertrophy and satellite cell number in rodent muscle.

    PubMed

    Dalbo, V J; Roberts, M D; Mobley, C B; Ballmann, C; Kephart, W C; Fox, C D; Santucci, V A; Conover, C F; Beggs, L A; Balaez, A; Hoerr, F J; Yarrow, J F; Borst, S E; Beck, D T

    2017-04-01

    The androgen-induced alterations in adult rodent skeletal muscle fibre cross-sectional area (fCSA), satellite cell content and myostatin (Mstn) were examined in 10-month-old Fisher 344 rats (n = 41) assigned to Sham surgery, orchiectomy (ORX), ORX + testosterone (TEST; 7.0 mg week(-1) ) or ORX + trenbolone (TREN; 1.0 mg week(-1) ). After 29 days, animals were euthanised and the levator ani/bulbocavernosus (LABC) muscle complex was harvested for analyses. LABC muscle fCSA was 102% and 94% higher in ORX + TEST and ORX + TREN compared to ORX (p < .001). ORX + TEST and ORX + TREN increased satellite cell numbers by 181% and 178% compared to ORX, respectively (p < .01), with no differences between conditions for myonuclear number per muscle fibre (p = .948). Mstn protein was increased 159% and 169% in the ORX + TEST and ORX + TREN compared to ORX (p < .01). pan-SMAD2/3 protein was ~30-50% greater in ORX compared to SHAM (p = .006), ORX + TEST (p = .037) and ORX + TREN (p = .043), although there were no between-treatment effects regarding phosphorylated SMAD2/3. Mstn, ActrIIb and Mighty mRNAs were lower in ORX, ORX + TEST and ORX + TREN compared to SHAM (p < .05). Testosterone and trenbolone administration increased muscle fCSA and satellite cell number without increasing myonuclei number, and increased Mstn protein levels. Several genes and signalling proteins related to myostatin signalling were differentially regulated by ORX or androgen therapy.

  12. Study of Nonlinear MHD Tribological Squeeze Film at Generalized Magnetic Reynolds Numbers Using DTM.

    PubMed

    Rashidi, Mohammad Mehdi; Freidoonimehr, Navid; Momoniat, Ebrahim; Rostami, Behnam

    2015-01-01

    In the current article, a combination of the differential transform method (DTM) and Padé approximation method are implemented to solve a system of nonlinear differential equations modelling the flow of a Newtonian magnetic lubricant squeeze film with magnetic induction effects incorporated. Solutions for the transformed radial and tangential momentum as well as solutions for the radial and tangential induced magnetic field conservation equations are determined. The DTM-Padé combined method is observed to demonstrate excellent convergence, stability and versatility in simulating the magnetic squeeze film problem. The effects of involved parameters, i.e. squeeze Reynolds number (N1), dimensionless axial magnetic force strength parameter (N2), dimensionless tangential magnetic force strength parameter (N3), and magnetic Reynolds number (Rem) are illustrated graphically and discussed in detail. Applications of the study include automotive magneto-rheological shock absorbers, novel aircraft landing gear systems and biological prosthetics.

  13. Study of Nonlinear MHD Tribological Squeeze Film at Generalized Magnetic Reynolds Numbers Using DTM

    PubMed Central

    Rashidi, Mohammad Mehdi; Freidoonimehr, Navid; Momoniat, Ebrahim; Rostami, Behnam

    2015-01-01

    In the current article, a combination of the differential transform method (DTM) and Padé approximation method are implemented to solve a system of nonlinear differential equations modelling the flow of a Newtonian magnetic lubricant squeeze film with magnetic induction effects incorporated. Solutions for the transformed radial and tangential momentum as well as solutions for the radial and tangential induced magnetic field conservation equations are determined. The DTM-Padé combined method is observed to demonstrate excellent convergence, stability and versatility in simulating the magnetic squeeze film problem. The effects of involved parameters, i.e. squeeze Reynolds number (N1), dimensionless axial magnetic force strength parameter (N2), dimensionless tangential magnetic force strength parameter (N3), and magnetic Reynolds number (Rem) are illustrated graphically and discussed in detail. Applications of the study include automotive magneto-rheological shock absorbers, novel aircraft landing gear systems and biological prosthetics. PMID:26267247

  14. Grasping numbers.

    PubMed

    Moretto, Giovanna; di Pellegrino, Giuseppe

    2008-07-01

    Both theoretical and empirical studies suggest that numerical processing is intimately linked to representations of goal-directed hand actions. Further evidence for this possibility is provided here by the results of two experiments, both of which revealed a powerful influence of numerical magnitude on the selection of hand grasping movements. Human participants performed either power or precision grip responses based on the semantic properties (e.g., parity) of visual Arabic numerals, in Experiment 1, or depending on their surface characteristics (e.g., colour), in Experiment 2. In both the experiments, it was found that small numerical values facilitated precision grip (commonly used to grasp small objects), while large numerical value potentiated power grip (commonly used to grasp large objects). These findings reveal that perceiving numbers can automatically prime grasping gestures, in a similar manner to viewing physical objects. This result is coherent with the view that processing of symbolic (numerical) and physical quantitative information converges onto a shared magnitude system representing the coordinates of action.

  15. Effects of Zidovudine Treatment on Heart mRNA Expression and Mitochondrial DNA Copy Number Associated with Alterations in Deoxynucleoside Triphosphate Composition in a Neonatal Rat Model.

    PubMed

    Snowdin, Jacob W; Hsiung, Chia-Heng; Kesterson, Daniel G; Kamath, Vasudeva G; McKee, Edward E

    2015-10-01

    The prevention of mother-to-child transmission (MTCT) of HIV is a crucial component in HIV therapy. Nucleoside reverse transcriptase inhibitors (NRTIs), primarily 3'-azido-3'-thymidine (AZT [zidovudine]), have been used to treat both mothers and neonates. While AZT is being replaced with less toxic drugs in treating mothers in MTCT prevention, it is still commonly used to treat neonates. Problems related to mitochondrial toxicity and potential mutagenesis associated with AZT treatment have been reported in treated cohorts. Yet little is known concerning the metabolism and potential toxicity of AZT on embryonic and neonatal tissues, especially considering that the enzymes of nucleoside metabolism change dramatically as many tissues convert from hyperplastic to hypertrophic growth during this period. AZT is known to inhibit thymidine phosphorylation and potentially alter deoxynucleoside triphosphate (dNTP) pools in adults. This study examines the effects of AZT on dNTP pools, mRNA expression of deoxynucleoside/deoxynucleotide metabolic enzymes, and mitochondrial DNA levels in a neonatal rat model. Results show that AZT treatment dramatically altered dNTP pools in the first 7 days of life after birth, which normalized to age-matched controls in the second and third weeks. Additionally, AZT treatment dramatically increased the mRNA levels of many enzymes involved in deoxynucleotide synthesis and mitochondrial biogenesis during the first week of life, which normalized to age-matched controls by the third week. These results were correlated with depletion of mitochondrial DNA noted in the second week. Taken together, results demonstrated that AZT treatment has a powerful effect on the deoxynucleotide synthesis pathways that may be associated with toxicity and mutagenesis.

  16. Evolutionary Changes in Gene Expression, Coding Sequence and Copy-Number at the Cyp6g1 Locus Contribute to Resistance to Multiple Insecticides in Drosophila

    PubMed Central

    Harrop, Thomas W. R.; Sztal, Tamar; Lumb, Christopher; Good, Robert T.; Daborn, Phillip J.; Batterham, Philip; Chung, Henry

    2014-01-01

    Widespread use of insecticides has led to insecticide resistance in many populations of insects. In some populations, resistance has evolved to multiple pesticides. In Drosophila melanogaster, resistance to multiple classes of insecticide is due to the overexpression of a single cytochrome P450 gene, Cyp6g1. Overexpression of Cyp6g1 appears to have evolved in parallel in Drosophila simulans, a sibling species of D. melanogaster, where it is also associated with insecticide resistance. However, it is not known whether the ability of the CYP6G1 enzyme to provide resistance to multiple insecticides evolved recently in D. melanogaster or if this function is present in all Drosophila species. Here we show that duplication of the Cyp6g1 gene occurred at least four times during the evolution of different Drosophila species, and the ability of CYP6G1 to confer resistance to multiple insecticides exists in D. melanogaster and D. simulans but not in Drosophila willistoni or Drosophila virilis. In D. virilis, which has multiple copies of Cyp6g1, one copy confers resistance to DDT and another to nitenpyram, suggesting that the divergence of protein sequence between copies subsequent to the duplication affected the activity of the enzyme. All orthologs tested conferred resistance to one or more insecticides, suggesting that CYP6G1 had the capacity to provide resistance to anthropogenic chemicals before they existed. Finally, we show that expression of Cyp6g1 in the Malpighian tubules, which contributes to DDT resistance in D. melanogaster, is specific to the D. melanogaster–D. simulans lineage. Our results suggest that a combination of gene duplication, regulatory changes and protein coding changes has taken place at the Cyp6g1 locus during evolution and this locus may play a role in providing resistance to different environmental toxins in different Drosophila species. PMID:24416303

  17. Decreased expression of brain-derived neurotrophic factor in BDNF(+/-) mice is associated with enhanced recovery of motor performance and increased neuroblast number following experimental stroke.

    PubMed

    Nygren, Josefine; Kokaia, Merab; Wieloch, Tadeusz

    2006-08-15

    Brain-derived neurotrophic factor (BDNF) is involved in brain plasticity and neuronal survival. Generally, BDNF enhances synaptic activity and neurite growth, although the effect of BDNF on neuronal survival and brain plasticity following injury is equivocal. Housing rats in an enriched environment after experimental stroke enhances recovery of sensory-motor function, which is associated with a decrease in the BDNF mRNA and protein levels. We used BDNF(+/-) mice and wild-type littermate mice to investigate whether the decrease in the brain levels of BDNF affected motor function or infarct volume following transient occlusion of the middle cerebral artery (tMCAO) for 40 min. We found that the BDNF(+/-) mice had a significantly improved motor function on the rotating pole test 2 weeks after tMCAO compared with wild-type mice. When intermittently exposed to an enriched environment following tMCAO, the wild-type mice improved motor function to the same degree as BDNF(+/-) mice. There was no effect of BDNF reduction on infarct volume. Neurogenesis is induced following experimental stroke, and in the striatum of BDNF(+/-) mice significantly increased numbers of neuroblasts compared with wild-type mice were seen, both in standard and in enriched conditions. We conclude that decreasing brain levels of BDNF enhances the recovery of function following experimental stroke.

  18. Rayleigh- and Prandtl-number dependence of the large-scale flow-structure in weakly-rotating turbulent thermal convection

    NASA Astrophysics Data System (ADS)

    Weiss, Stephan; Wei, Ping; Ahlers, Guenter

    2015-11-01

    Turbulent thermal convection under rotation shows a remarkable variety of different flow states. The Nusselt number (Nu) at slow rotation rates (expressed as the dimensionless inverse Rossby number 1/Ro), for example, is not a monotonic function of 1/Ro. Different 1/Ro-ranges can be observed with different slopes ∂Nu / ∂ (1 / Ro) . Some of these ranges are connected by sharp transitions where ∂Nu / ∂ (1 / Ro) changes discontinuously. We investigate different regimes in cylindrical samples of aspect ratio Γ = 1 by measuring temperatures at the sidewall of the sample for various Prandtl numbers in the range 3 < Pr < 35 and Rayleigh numbers in the range of 108 < Ra < 4 ×1011 . From these measurements we deduce changes of the flow structure. We learn about the stability and dynamics of the large-scale circulation (LSC), as well as about its breakdown and the onset of vortex formation close to the top and bottom plate. We shall examine correlations between these measurements and changes in the heat transport. This work was supported by NSF grant DRM11-58514. SW acknowledges support by the Deutsche Forschungsgemeinschaft.

  19. Effect of Temperature, pH, and Initial Cell Number on luxCDABE and nah Gene Expression during Naphthalene and Salicylate Catabolism in the Bioreporter Organism Pseudomonas putida RB1353

    PubMed Central

    Dorn, Jonathan G.; Frye, Robert J.; Maier, Raina M.

    2003-01-01

    One limitation of employing lux bioreporters to monitor in situ microbial gene expression in dynamic, laboratory-scale systems is the confounding variability in the luminescent responses. For example, despite careful control of oxygen tension, growth stage, and cell number, luminescence from Pseudomonas putida RB1353, a naphthalene-degrading lux bioreporter, varied by more than sevenfold during saturated flow column experiments in our laboratory. Therefore, this study was conducted to determine what additional factors influence the luminescent response. Specifically, this study investigated the impact of temperature, pH, and initial cell number (variations within an order of magnitude) on the peak luminescence of P. putida RB1353 and the maximum degradation rate (Vmax) during salicylate and naphthalene catabolism. Statistical analyses based on general linear models indicated that under constant oxygen tension, temperature and pH accounted for 98.1% of the variability in luminescence during salicylate catabolism and 94.2 and 49.5% of the variability in Vmax during salicylate and naphthalene catabolism, respectively. Temperature, pH, and initial substrate concentration accounted for 99.9% of the variability in luminescence during naphthalene catabolism. Initial cell number, within an order of magnitude, did not have a significant influence on either peak luminescence or Vmax during salicylate and naphthalene catabolism. Over the ranges of temperature and pH evaluated, peak luminescence varied by more than 4 orders of magnitude. The minimum parameter deviation required to alter lux gene expression during salicylate and naphthalene catabolism was a change in temperature of 1°C, a change in pH of 0.2, or a change in initial cell number of 1 order of magnitude. Results from this study indicate that there is a need for careful characterization of the impact of environmental conditions on both the expression of the reporter and catabolic genes and the activities of the

  20. Collision limited reaction rates for arbitrarily shaped particles across the entire diffusive Knudsen number range.

    PubMed

    Gopalakrishnan, Ranganathan; Thajudeen, Thaseem; Hogan, Christopher J

    2011-08-07

    Aerosol particle reactions with vapor molecules and molecular clusters are often collision rate limited, hence determination of particle-vapor molecule and particle-molecular cluster collision rates are of fundamental importance. These collisions typically occur in the mass transfer transition regime, wherein the collision kernel (collision rate coefficient) is dependent upon the diffusive Knudsen number, Kn(D). While this alone prohibits analytical determination of the collision kernel, aerosol particle- vapor molecule collisions are further complicated when particles are non-spherical, as is often the case for particles formed in high temperature processes (combustion). Recently, through a combination of mean first passage time simulations and dimensional analysis, it was shown that the collision kernel for spherical particles and vapor molecules could be expressed as a dimensionless number, H, which is solely a function of Kn(D). In this work, it is shown through similar mean first passage times and redefinitions of H and Kn(D) that the H(Kn(D)) relationship found for spherical particles applies for particles of arbitrary shape, including commonly encountered agglomerate particles. Specifically, it is shown that to appropriately define H and Kn(D), two geometric descriptors for a particle are necessary: its Smoluchowski radius, which defines the collision kernel in the continuum regime (Kn(D)→0) and its orientationally averaged projected area, which defines the collision kernel in the free molecular regime (Kn(D)→∞). With these two parameters, as well as the properties of the colliding vapor molecule (mass and diffusion coefficient), the particle-vapor molecule collision kernel in the continuum, transition, and free molecular regimes can be simply calculated using the H(Kn(D)) relationship.

  1. The RNA-Binding Chaperone Hfq Is an Important Global Regulator of Gene Expression in Pasteurella multocida and Plays a Crucial Role in Production of a Number of Virulence Factors, Including Hyaluronic Acid Capsule

    PubMed Central

    Mégroz, Marianne; Kleifeld, Oded; Wright, Amy; Powell, David; Harrison, Paul; Adler, Ben; Harper, Marina

    2016-01-01

    The Gram-negative bacterium Pasteurella multocida is the causative agent of a number of economically important animal diseases, including avian fowl cholera. Numerous P. multocida virulence factors have been identified, including capsule, lipopolysaccharide (LPS), and filamentous hemagglutinin, but little is known about how the expression of these virulence factors is regulated. Hfq is an RNA-binding protein that facilitates riboregulation via interaction with small noncoding RNA (sRNA) molecules and their mRNA targets. Here, we show that a P. multocida hfq mutant produces significantly less hyaluronic acid capsule during all growth phases and displays reduced in vivo fitness. Transcriptional and proteomic analyses of the hfq mutant during mid-exponential-phase growth revealed altered transcript levels for 128 genes and altered protein levels for 78 proteins. Further proteomic analyses of the hfq mutant during the early exponential growth phase identified 106 proteins that were produced at altered levels. Both the transcript and protein levels for genes/proteins involved in capsule biosynthesis were reduced in the hfq mutant, as were the levels of the filamentous hemagglutinin protein PfhB2 and its secretion partner LspB2. In contrast, there were increased expression levels of three LPS biosynthesis genes, encoding proteins involved in phosphocholine and phosphoethanolamine addition to LPS, suggesting that these genes are negatively regulated by Hfq-dependent mechanisms. Taken together, these data provide the first evidence that Hfq plays a crucial role in regulating the global expression of P. multocida genes, including the regulation of key P. multocida virulence factors, capsule, LPS, and filamentous hemagglutinin. PMID:26883595

  2. Simple expressions for the maximum omnidirectional bandgap of bilayer photonic crystals.

    PubMed

    Hsueh, W J; Wun, S J

    2011-05-01

    We propose three dimensionless approximate expressions to predict the thickness filling factor, gap center, and gap width of the maximum omnidirectional gap (MODG) for various refractive indices in one-dimensional photonic crystals. These expressions are simple and do not include trigonometric or inverse trigonometric functions. It is easy to obtain the MODG from given refractive indices but also to estimate the refractive indices from the MODG based on the results.

  3. Filament actuation by an active colloid at low Reynolds number

    NASA Astrophysics Data System (ADS)

    Laskar, Abhrajit; Adhikari, R.

    2017-03-01

    Active colloids and externally actuated semi-flexible filaments provide basic building blocks for designing autonomously motile micro-machines. Here, we show that a passive semi-flexible filament can be actuated and transported by attaching an active colloid to its terminus. We study the dynamics of this assembly when it is free, tethered, or clamped using overdamped equations of motion that explicitly account for active fluid flow and the forces it mediates. Linear states are destabilised by buckling instabilities to produce stable states of non-zero curvature and writhe. We demarcate boundaries of these states in the two-dimensional parameter space representing dimensionless measures of polar and apolar activity. Our proposed assembly can be used as a novel component in the design of micro-machines at low Reynolds number and to study elastic instabilities driven by ‘follower’ forces.

  4. Number Concepts with "Number Worlds": Thickening Understandings

    ERIC Educational Resources Information Center

    Liljedahl, Peter; Sinclair, Nathalie; Zazkis, Rina

    2006-01-01

    This study focuses on the nature of preservice elementary school teachers' understandings of several concepts in elementary number theory that are evoked by a computer-based microworld called "Number Worlds". In particular, the focus is on the concepts of factor, multiple and prime number. The notion of "thickness" is examined with respect to…

  5. On Multiplying Negative Numbers.

    ERIC Educational Resources Information Center

    Crowley, Mary L.; Dunn, Kenneth A.

    1985-01-01

    Comments on the history of negative numbers, some methods that can be used to introduce the multiplication of negative numbers to students, and an explanation of why the product of two negative numbers is a positive number are included. (MNS)

  6. Novel methods for evaluation of the Reynolds number of synthetic jets

    NASA Astrophysics Data System (ADS)

    Kordík, J.; Broučková, Z.; Vít, T.; Pavelka, M.; Trávníček, Z.

    2014-06-01

    The paper proposes four novel methods of evaluation of synthetic jet velocity amplitude (Reynolds number in dimensionless form). The methods are based on the measurement of synthetic jet actuator electrical input (alternating current and voltage) and are applicable for loudspeaker-based actuators with air as the working fluid. Experimental validations are performed by means of hot-wire anemometry and laser Doppler vibrometry. Uncertainty and limitation of the methods are discussed, including a proposal of an adequate incompressibility criterion. Ranges of applicability are specified. Additionally, the results are compared with available literature, namely with another method based on cavity pressure measurements, a good consistency is found.

  7. All Square Chiliagonal Numbers

    ERIC Educational Resources Information Center

    A?iru, Muniru A.

    2016-01-01

    A square chiliagonal number is a number which is simultaneously a chiliagonal number and a perfect square (just as the well-known square triangular number is both triangular and square). In this work, we determine which of the chiliagonal numbers are perfect squares and provide the indices of the corresponding chiliagonal numbers and square…

  8. Promote Number Sense

    ERIC Educational Resources Information Center

    Gurganus, Susan

    2004-01-01

    "Number sense" is "an intuition about numbers that is drawn from all varied meanings of number" (NCTM, 1989, p. 39). Students with number sense understand that numbers are representative of objects, magnitudes, relationships, and other attributes; that numbers can be operated on, compared, and used for communication. It is fundamental knowledge…

  9. Numbers Defy the Law of Large Numbers

    ERIC Educational Resources Information Center

    Falk, Ruma; Lann, Avital Lavie

    2015-01-01

    As the number of independent tosses of a fair coin grows, the rates of heads and tails tend to equality. This is misinterpreted by many students as being true also for the absolute numbers of the two outcomes, which, conversely, depart unboundedly from each other in the process. Eradicating that misconception, as by coin-tossing experiments,…

  10. IMPACT OF CAPILLARY AND BOND NUMBERS ON RELATIVE PERMEABILITY

    SciTech Connect

    Kishore K. Mohanty

    2002-09-30

    Recovery and recovery rate of oil, gas and condensates depend crucially on their relative permeability. Relative permeability in turn depends on the pore structure, wettability and flooding conditions, which can be represented by a set of dimensionless groups including capillary and bond numbers. The effect of flooding conditions on drainage relative permeabilities is not well understood and is the overall goal of this project. This project has three specific objectives: to improve the centrifuge relative permeability method, to measure capillary and bond number effects experimentally, and to develop a pore network model for multiphase flows. A centrifuge has been built that can accommodate high pressure core holders and x-ray saturation monitoring. The centrifuge core holders can operate at a pore pressure of 6.9 MPa (1000 psi) and an overburden pressure of 17 MPa (2500 psi). The effect of capillary number on residual saturation and relative permeability in drainage flow has been measured. A pore network model has been developed to study the effect of capillary numbers and viscosity ratio on drainage relative permeability. Capillary and Reynolds number dependence of gas-condensate flow has been studied during well testing. A method has been developed to estimate relative permeability parameters from gas-condensate well test data.

  11. Stationary shapes of deformable particles moving at low Reynolds numbers

    NASA Astrophysics Data System (ADS)

    Boltz, Horst-Holger; Kierfeld, Jan

    2016-11-01

    We introduce an iterative solution scheme in order to calculate stationary shapes of deformable elastic capsules which are steadily moving through a viscous fluid at low Reynolds numbers. The iterative solution scheme couples hydrodynamic boundary integral methods and elastic shape equations to find the stationary axisymmetric shape and the velocity of an elastic capsule moving in a viscous fluid governed by the Stokes equation. We use this approach to systematically study dynamical shape transitions of capsules with Hookean stretching and bending energies and spherical resting shape sedimenting under the influence of gravity or centrifugal forces. We find three types of possible axisymmetric stationary shapes for sedimenting capsules with fixed volume: a pseudospherical state, a pear-shaped state, and buckled shapes. Capsule shapes are controlled by two dimensionless parameters, the Föppl-von-Kármán number characterizing the elastic properties and a Bond number characterizing the driving force. For increasing gravitational force the spherical shape transforms into a pear shape. For very large bending rigidity (very small Föppl-von-Kármán number) this transition is discontinuous with shape hysteresis. The corresponding transition line terminates, however, in a critical point, such that the discontinuous transition is not present at typical Föppl-von-Kármán numbers of synthetic capsules. In an additional bifurcation, buckled shapes occur upon increasing the gravitational force.

  12. Hall Effect Thruster Interactions Data From the Russian Express-A2 and Express-A3 Satellites. Part 2; Acquire TM Date for Type B Sensors for "Express-A" Number 2 Satellite for the Period of March 12, 2000 to and Including June 15, 2000, Task 25

    NASA Technical Reports Server (NTRS)

    Dunning, John (Technical Monitor); Sitnikova, N.; Volkov, D.; Maximov, I.; Petrusevich, V.; Allen, D.

    2003-01-01

    This 12-part report documents the data obtained from various sensor measurements taken aboard the Russian Express-A2 and Express-A3 spacecraft in Geosynchronous Earth Orbit (GEO). These GEO communications satellites, which were designed and built by NPO Prikladnoy Mekhaniki (NPO PM) of Zheleznogorsk, Russia, utilize Hall thruster propulsion systems for north-south and east-west stationkeeping and as of June 2002, were still operating at 80 E. and 11 W., respectively. Express-A2 was launched on March 12, 2000, while Express-A3 was launched on June 24, 2000. The diagnostic equipment from which these data were taken includes electric field strength sensors, ion current and energy sensors, and pressure sensors. The diagnostics and the Hall thruster propulsion systems are described in detail along with lists of tabular data from those diagnostics and propulsion system and other satellite systems. Space Power, Inc., now part of Pratt & Whitney's Chemical Systems Division, under contract NAS3 99151 to the NASA Glenn Research Center, obtained these data over several periods from March 12, 2000, through September 30, 2001. Each of the 12 individual reports describe, in detail, the propulsion systems as well as the diagnostic sensors utilized. Finally, parts 11 and 12 include the requirements to which NPO PM prepared and delivered these data.

  13. Hall Effect Thruster Interactions Data from the Russian Express-A2 and Express-A3 Satellites. Part 4; Acquire TM-Data for Type A and Type B Sensors for "Express-A" Number 3 Satellite, Task 27A

    NASA Technical Reports Server (NTRS)

    Sitnikova, N.; Volkov, D.; Maximov, I.; Petrusevich, V.; Allen, D.

    2003-01-01

    This 12-part report documents the data obtained from various sensor measurements taken aboard the Russian Express-A2 and Express-A3 spacecraft in Geosynchronous Earth Orbit (GEO). These GEO communications satellites, which were designed and built by NPO Prikladnoy Mekhaniki (NPO PM) of Zheleznogorsk, Russia, utilize Hall thruster propulsion systems for north-south and east-west stationkeeping and as of June 2002, were still operating at 80deg E., and 11deg W., respectively. Express-A2 was launched on March 12, 2000, while Express-A3 was launched on June 24, 2000. The diagnostic equipment from which these data were taken includes electric field strength sensors, ion current and energy sensors, and pressure sensors. The diagnostics and the Hall thruster propulsion systems are described in detail along with lists of tabular data from those diagnostics and propulsion system and other satellite systems. Space Power, Inc., now part of Pratt & Whitney's Chemical Systems Division, under contract NAS3-99151 to the NASA Glenn Research Center, obtained these data over several periods from March 12, 2000, through September 30, 2001. Each of the 12 individual reports describe, in detail, the propulsion systems as well as the diagnostic sensors utilized. Finally, parts 11 and 12 include the requirements to which NPO PM prepared and delivered these data.

  14. Hall Effect Thruster Interactions Data from the Russian Express-A2 and Express-A3 Satellites. Part 8; Acquire TM-Data for Type A and Type B Sensors for "Express A" Number 3 Satellite for the Period of January 1, 2001 to and Including March 31, 2001, Task 27C

    NASA Technical Reports Server (NTRS)

    Dunning, John (Technical Monitor); Sitnikova, N.; Volkov, D.; Maximov, I.; Petrusevich, V.; Allen, D.

    2003-01-01

    This 12-part report documents the data obtained from various sensor measurements taken aboard the Russian Express-A2 and Express-A3 spacecraft in Geosynchronous Earth Orbit (GEO). These GEO communications satellites, which were designed and built by NPO Prikladnoy Mekhaniki (NPO PM) of Zheleznogorsk, Russia, utilize Hall thruster propulsion systems for north-south and east-west stationkeeping and as of June 2002, were still operating at 80deg E. and 11deg W., respectively. Express-A2 was launched on March 12, 2000, while Express-A3 was launched on June 24, 2000. The diagnostic equipment from which these data were taken includes electric field strength sensors, ion current and energy sensors, and pressure sensors. The diagnostics and the Hall thruster propulsion systems are described in detail along with lists of tabular data from those diagnostics and propulsion system and other satellite systems. Space Power, Inc., now part of Pratt & Whitney's Chemical Systems Division, under contract NAS3 99151 to the NASA Glenn Research Center, obtained these data over several periods from March 12, 2000, through September 30, 2001. Each of the 12 individual reports describe, in detail, the propulsion systems as well as the diagnostic sensors utilized. Finally, parts 11 and 12 include the requirements to which NPO PM prepared and delivered these data.

  15. Hall Effect Thruster Interactions Data From the Russian Express-A2 and Express-A3 Satellites. Part 10; Acquire TM-Data for Type A and Type B Sensors for "Express-A" Number 3 Satellite for the Period of July 1, 2001 to and Including September 30, 2001, Task 27D

    NASA Technical Reports Server (NTRS)

    Dunning, John (Technical Monitor); Sitnikova, N.; Volkov, D.; Maximov, I.; Petrusevich, V.; Allen, D.

    2003-01-01

    This 12-part report documents the data obtained from various sensor measurements taken aboard the Russian Express-A2 and Express-A3 spacecraft in Geosynchronous Earth Orbit (GEO). These GEO communications satellites, which were designed and built by NPO Prikladnoy Mekhaniki (NPO PM) of Zheleznogorsk, Russia, utilize Hall thruster propulsion systems for north-south and east-west stationkeeping and as of June 2002, were still operating at 80 E. and 11 W., respectively. Express-A2 was launched on March 12, 2000, while Express-A3 was launched on June 24, 2000. The diagnostic equipment from which these data were taken includes electric field strength sensors, ion current and energy sensors, and pressure sensors. The diagnostics and the Hall thruster propulsion systems are described in detail along with lists of tabular data from those diagnostics and propulsion system and other satellite systems. Space Power, Inc., now part of Pratt & Whitney's Chemical Systems Division, under contract NAS3 99151 to the NASA Glenn Research Center, obtained these data over several periods from March 12, 2000, through September 30, 2001. Each of the 12 individual reports describe, in detail, the propulsion systems as well as the diagnostic sensors utilized. Finally, parts 11 and 12 include the requirements to which NPO PM prepared and delivered these data.

  16. 32 CFR 1602.19 - Numbers.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 32 National Defense 6 2012-07-01 2012-07-01 false Numbers. 1602.19 Section 1602.19 National Defense Other Regulations Relating to National Defense SELECTIVE SERVICE SYSTEM DEFINITIONS § 1602.19 Numbers. Cardinal numbers may be expressed by Arabic or Roman symbols....

  17. 32 CFR 1602.19 - Numbers.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 32 National Defense 6 2014-07-01 2014-07-01 false Numbers. 1602.19 Section 1602.19 National Defense Other Regulations Relating to National Defense SELECTIVE SERVICE SYSTEM DEFINITIONS § 1602.19 Numbers. Cardinal numbers may be expressed by Arabic or Roman symbols....

  18. 32 CFR 1602.19 - Numbers.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 32 National Defense 6 2010-07-01 2010-07-01 false Numbers. 1602.19 Section 1602.19 National Defense Other Regulations Relating to National Defense SELECTIVE SERVICE SYSTEM DEFINITIONS § 1602.19 Numbers. Cardinal numbers may be expressed by Arabic or Roman symbols....

  19. 32 CFR 1602.19 - Numbers.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 6 2011-07-01 2011-07-01 false Numbers. 1602.19 Section 1602.19 National Defense Other Regulations Relating to National Defense SELECTIVE SERVICE SYSTEM DEFINITIONS § 1602.19 Numbers. Cardinal numbers may be expressed by Arabic or Roman symbols....

  20. 32 CFR 1602.19 - Numbers.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 32 National Defense 6 2013-07-01 2013-07-01 false Numbers. 1602.19 Section 1602.19 National Defense Other Regulations Relating to National Defense SELECTIVE SERVICE SYSTEM DEFINITIONS § 1602.19 Numbers. Cardinal numbers may be expressed by Arabic or Roman symbols....

  1. Similarity states of homogeneous stably-stratified turbulence at infinite Froude number

    NASA Technical Reports Server (NTRS)

    Chasnov, Jeffrey R.

    1993-01-01

    We present evidence of similarity states which may develop inhomogeneous stably-stratified flows if a dimensionless group in addition to the Reynolds number, the so-called Froude number, is sufficiently large. Here, we define the Froude number as the ratio of the internal wave time-scale to the turbulence time-scale. We examine three different similarity states which may develop depending on the initial conditions of the velocity and density fields. Theoretical arguments and results of large-eddy simulations will be presented. We will conclude this report with some speculative thoughts on similarity states which may develop in stably-stratified turbulence at arbitrary Froude number as well as our future research plans in this area.

  2. Are Numbers Gendered?

    ERIC Educational Resources Information Center

    Wilkie, James E. B.; Bodenhausen, Galen V.

    2012-01-01

    We examined the possibility that nonsocial, highly generic concepts are gendered. Specifically, we investigated the gender connotations of Arabic numerals. Across several experiments, we show that the number 1 and other odd numbers are associated with masculinity, whereas the number 2 and other even numbers are associated with femininity, in ways…

  3. Building Numbers from Primes

    ERIC Educational Resources Information Center

    Burkhart, Jerry

    2009-01-01

    Prime numbers are often described as the "building blocks" of natural numbers. This article shows how the author and his students took this idea literally by using prime factorizations to build numbers with blocks. In this activity, students explore many concepts of number theory, including the relationship between greatest common factors and…

  4. Sierpinski and Carmichael Numbers

    DTIC Science & Technology

    2013-01-16

    prove that almost all odd natural numbers k have the property that 2nk + 1 is not a Carmichael number for any n 2 N; this implies the existence of a...Sierpiński and Riesel numbers. First, we prove that almost all odd natural numbers k have the property that 2nk + 1 is not a Carmichael number for any n...Sierpiński [25] showed that there are infinitely many odd natural numbers k with the property that 2nk + 1 is composite for every natural number n; such an

  5. PET: [number sign]1 is number one

    SciTech Connect

    Miller, C.

    1994-09-01

    Subsidized in the beginning by bottle deposits, now spurred by the ability of curbside recycling to collect more than soda bottles, polyethylene terephthalate (PET) recycling has made great strides in the last 10 years. Its growth rate and increased market demand are the envy of many other materials. Appropriate, if not deliberately, this number-one resin is listed under the Society for the Plastics Industry's resin identification code as [number sign]1. Unlike most recyclables, the market demand for recycled PET is greater than the supply. As a result, demand not supply, is fueling the increase in PET recycling.

  6. Flying and swimming animals cruise at a Strouhal number tuned for high power efficiency.

    PubMed

    Taylor, Graham K; Nudds, Robert L; Thomas, Adrian L R

    2003-10-16

    Dimensionless numbers are important in biomechanics because their constancy can imply dynamic similarity between systems, despite possible differences in medium or scale. A dimensionless parameter that describes the tail or wing kinematics of swimming and flying animals is the Strouhal number, St = fA/U, which divides stroke frequency (f) and amplitude (A) by forward speed (U). St is known to govern a well-defined series of vortex growth and shedding regimes for airfoils undergoing pitching and heaving motions. Propulsive efficiency is high over a narrow range of St and usually peaks within the interval 0.2 < St < 0.4 (refs 3-8). Because natural selection is likely to tune animals for high propulsive efficiency, we expect it to constrain the range of St that animals use. This seems to be true for dolphins, sharks and bony fish, which swim at 0.2 < St < 0.4. Here we show that birds, bats and insects also converge on the same narrow range of St, but only when cruising. Tuning cruise kinematics to optimize St therefore seems to be a general principle of oscillatory lift-based propulsion.

  7. Flying and swimming animals cruise at a Strouhal number tuned for high power efficiency

    NASA Astrophysics Data System (ADS)

    Taylor, Graham K.; Nudds, Robert L.; Thomas, Adrian L. R.

    2003-10-01

    Dimensionless numbers are important in biomechanics because their constancy can imply dynamic similarity between systems, despite possible differences in medium or scale. A dimensionless parameter that describes the tail or wing kinematics of swimming and flying animals is the Strouhal number, St = fA/U, which divides stroke frequency (f) and amplitude (A) by forward speed (U). St is known to govern a well-defined series of vortex growth and shedding regimes for airfoils undergoing pitching and heaving motions. Propulsive efficiency is high over a narrow range of St and usually peaks within the interval 0.2 < St < 0.4 (refs 3-8). Because natural selection is likely to tune animals for high propulsive efficiency, we expect it to constrain the range of St that animals use. This seems to be true for dolphins, sharks and bony fish, which swim at 0.2 < St < 0.4. Here we show that birds, bats and insects also converge on the same narrow range of St, but only when cruising. Tuning cruise kinematics to optimize St therefore seems to be a general principle of oscillatory lift-based propulsion.

  8. Possible number systems.

    PubMed

    Rips, Lance J; Thompson, Samantha

    2014-03-01

    Number systems-such as the natural numbers, integers, rationals, reals, or complex numbers-play a foundational role in mathematics, but these systems can present difficulties for students. In the studies reported here, we probed the boundaries of people's concept of a number system by asking them whether "number lines" of varying shapes qualify as possible number systems. In Experiment 1, participants rated each of a set of number lines as a possible number system, where the number lines differed in their structures (a single straight line, a step-shaped line, a double line, or two branching structures) and in their boundedness (unbounded, bounded below, bounded above, bounded above and below, or circular). Participants also rated each of a group of mathematical properties (e.g., associativity) for its importance to number systems. Relational properties, such as associativity, predicted whether participants believed that particular forms were number systems, as did the forms' ability to support arithmetic operations, such as addition. In Experiment 2, we asked participants to produce properties that were important for number systems. Relational, operation, and use-based properties from this set again predicted ratings of whether the number lines were possible number systems. In Experiment 3, we found similar results when the number lines indicated the positions of the individual numbers. The results suggest that people believe that number systems should be well-behaved with respect to basic arithmetic operations, and that they reject systems for which these operations produce ambiguous answers. People care much less about whether the systems have particular numbers (e.g., 0) or sets of numbers (e.g., the positives).

  9. Number Sense Made Simple Using Number Patterns

    ERIC Educational Resources Information Center

    Su, Hui Fang Huang; Marinas, Carol; Furner, Joseph

    2011-01-01

    This article highlights investigating intriguing number patterns utilising an emerging technology called the Square Tool. Mathematics teachers of grades K-12 will find the Square Tool useful in making connections and bridging the gap from the concrete to the abstract. Pattern recognition helps students discover various mathematical concepts. With…

  10. Generalized Fibonacci Numbers and Dimer Statistics

    NASA Astrophysics Data System (ADS)

    Lu, W. T.; Wu, F. Y.

    2003-04-01

    We establish new product identities involving the q-analogue of the Fibonacci numbers. We show that the identities lead to alternate expressions of generating functions for close-packed dimers on non-orientable surfaces.

  11. Generalized Fibonacci Numbers and Dimer Statistics

    NASA Astrophysics Data System (ADS)

    Lu, W. T.; Wu, F. Y.

    We establish new product identities involving the q-analogue of the Fibonacci numbers. We show that the identities lead to alternate expressions of generating functions for close-packed dimers on non-orientable surfaces.

  12. Gas absorption in pulmonary airways at low Peclet number

    SciTech Connect

    Grotberg, J.B. )

    1990-05-01

    A mathematical model is presented that investigates the mass transport of a diffusible and soluble gas contaminant through a liquid-lined tube when the Peclet number is small. The transport is determined by four dimensionless parameters: lambda, the tube aspect ratio; d, the relative difference in end concentrations; gamma, the radial transport coefficient; and Pe, the Peclet number. The problem is formulated for arbitrary gamma, but in the case of ozone and nitrous oxides the value of gamma is small. An asymptotic analysis for Pe much less than 1 and gamma much less than 1 is presented which yields the concentration field and transport characteristics we seek. It also provides a low Peclet number analysis for the conjugate problem of mass and heat transfer that is not currently available in the literature. The application to transport in the small airways of the lung is discussed, particularly the radial absorption differences in inspiratory and expiratory flow. Depending on the relative sizes of gamma and Pe, fractional uptake decreases with increasing Pe during inspiration but can increase during expiration.

  13. The Remarkable Number "1"

    ERIC Educational Resources Information Center

    Allen, G. Donald

    2014-01-01

    In human history, the origin of the numbers came from definite practical needs. Indeed, there is strong evidence that numbers were created before writing. The number "1", dating back at least 20,000 years, was found as a counting symbol on a bone. The famous statement by the German mathematician Leopold Kronecker (1823-1891), "God…

  14. Estimating Large Numbers

    ERIC Educational Resources Information Center

    Landy, David; Silbert, Noah; Goldin, Aleah

    2013-01-01

    Despite their importance in public discourse, numbers in the range of 1 million to 1 trillion are notoriously difficult to understand. We examine magnitude estimation by adult Americans when placing large numbers on a number line and when qualitatively evaluating descriptions of imaginary geopolitical scenarios. Prior theoretical conceptions…

  15. Discovery: Prime Numbers

    ERIC Educational Resources Information Center

    de Mestre, Neville

    2008-01-01

    Prime numbers are important as the building blocks for the set of all natural numbers, because prime factorisation is an important and useful property of all natural numbers. Students can discover them by using the method known as the Sieve of Eratosthenes, named after the Greek geographer and astronomer who lived from c. 276-194 BC. Eratosthenes…

  16. The Numbered Forest.

    ERIC Educational Resources Information Center

    Kissner, Emily

    2000-01-01

    Describes the activity of numbering trees in which students number trees or find the numbered trees and observe other features according to class time. This activity aims to increase student tracking, mapping, and writing skills and integrate them with math skills. Suggests follow up activities that focus on reading, writing, and language skills.…

  17. Sum-Difference Numbers

    ERIC Educational Resources Information Center

    Shi, Yixun

    2010-01-01

    Starting with an interesting number game sometimes used by school teachers to demonstrate the factorization of integers, "sum-difference numbers" are defined. A positive integer n is a "sum-difference number" if there exist positive integers "x, y, w, z" such that n = xy = wz and x ? y = w + z. This paper characterizes all sum-difference numbers…

  18. The Soybean Rhg1 Locus for Resistance to the Soybean Cyst Nematode Heterodera glycines Regulates the Expression of a Large Number of Stress- and Defense-Related Genes in Degenerating Feeding Cells1[C][W][OA

    PubMed Central

    Kandoth, Pramod Kaitheri; Ithal, Nagabhushana; Recknor, Justin; Maier, Tom; Nettleton, Dan; Baum, Thomas J.; Mitchum, Melissa G.

    2011-01-01

    To gain new insights into the mechanism of soybean (Glycine max) resistance to the soybean cyst nematode (Heterodera glycines), we compared gene expression profiles of developing syncytia in soybean near-isogenic lines differing at Rhg1 (for resistance to Heterodera glycines), a major quantitative trait locus for resistance, by coupling laser capture microdissection with microarray analysis. Gene expression profiling revealed that 1,447 genes were differentially expressed between the two lines. Of these, 241 (16.8%) were stress- and defense-related genes. Several stress-related genes were up-regulated in the resistant line, including those encoding homologs of enzymes that lead to increased levels of reactive oxygen species and proteins associated with the unfolded protein response. These results indicate that syncytia induced in the resistant line are undergoing severe oxidative stress and imbalanced endoplasmic reticulum homeostasis, both of which likely contribute to the resistance reaction. Defense-related genes up-regulated within syncytia of the resistant line included those predominantly involved in apoptotic cell death, the plant hypersensitive response, and salicylic acid-mediated defense signaling; many of these genes were either partially suppressed or not induced to the same level by a virulent soybean cyst nematode population for successful nematode reproduction and development on the resistant line. Our study demonstrates that a network of molecular events take place during Rhg1-mediated resistance, leading to a highly complex defense response against a root pathogen. PMID:21335526

  19. The Soybean Rhg1 locus for resistance to the soybean cyst nematode Heterodera glycines regulates the expression of a large number of stress- and defense-related genes in degenerating feeding cells.

    PubMed

    Kandoth, Pramod Kaitheri; Ithal, Nagabhushana; Recknor, Justin; Maier, Tom; Nettleton, Dan; Baum, Thomas J; Mitchum, Melissa G

    2011-04-01

    To gain new insights into the mechanism of soybean (Glycine max) resistance to the soybean cyst nematode (Heterodera glycines), we compared gene expression profiles of developing syncytia in soybean near-isogenic lines differing at Rhg1 (for resistance to Heterodera glycines), a major quantitative trait locus for resistance, by coupling laser capture microdissection with microarray analysis. Gene expression profiling revealed that 1,447 genes were differentially expressed between the two lines. Of these, 241 (16.8%) were stress- and defense-related genes. Several stress-related genes were up-regulated in the resistant line, including those encoding homologs of enzymes that lead to increased levels of reactive oxygen species and proteins associated with the unfolded protein response. These results indicate that syncytia induced in the resistant line are undergoing severe oxidative stress and imbalanced endoplasmic reticulum homeostasis, both of which likely contribute to the resistance reaction. Defense-related genes up-regulated within syncytia of the resistant line included those predominantly involved in apoptotic cell death, the plant hypersensitive response, and salicylic acid-mediated defense signaling; many of these genes were either partially suppressed or not induced to the same level by a virulent soybean cyst nematode population for successful nematode reproduction and development on the resistant line. Our study demonstrates that a network of molecular events take place during Rhg1-mediated resistance, leading to a highly complex defense response against a root pathogen.

  20. Genome Wide Copy Number Analysis of Paediatric Burkitt Lymphoma Using Formalin-Fixed Tissues Reveals a Subset with Gain of Chromosome 13q and Corresponding miRNA Over Expression

    PubMed Central

    Schiffman, Joshua D.; Lorimer, Patrick D.; Rodic, Vladimir; Jahromi, Mona S.; Downie, Jonathan M.; Bayerl, Michael G.; Sanmann, Jennifer N.; Althof, Pamela A.; Sanger, Warren G.; Barnette, Phillip; Perkins, Sherrie L.; Miles, Rodney R.

    2011-01-01

    SUMMARY The majority of paediatric Burkitt lymphoma (pBL) patients that relapse will die of disease, but markers for this high-risk subset are unknown. MYC translocations characterize pBL, but additional genetic changes may relate to prognosis and serve as potential biomarkers. We utilized a molecular inversion probe single nucleotide polymorphism assay to perform high resolution, genome-wide copy number analysis on archival formalin-fixed, paraffin-embedded pBL and germline tissues. We identified copy number abnormalities (CNAs) in 18/28 patients (64%) with a total of 62 CNAs that included 32 gains and 30 copy number losses. We identified 7 recurrent CNAs including 1q gain (7/28, 25%), 13q gain (3/28, 11%), and 17p loss (4/28, 14%). The minimum common amplified region on 13q was at 13q31 and included the MIR17HG (MIR17-92) locus. Samples with this gain had higher levels of MIR17 RNA and showed a tendency for early relapse. Tumour-specific uniparental disomy was identified in 32% of cases and usually was recurrent. These results demonstrate that high-resolution copy number analysis can be performed on archival lymphoma tissue specimens, which has significance for the study of rare diseases. PMID:21981616

  1. Versatile page numbering analysis

    NASA Astrophysics Data System (ADS)

    Déjean, Hervé; Meunier, Jean-Luc

    2008-01-01

    In this paper, we revisit the problem of detecting the page numbers of a document. This work is motivated by a need for a generic method which applies on a large variety of documents, as well as the need for analyzing the document page numbering scheme rather than spotting one number per page. We propose here a novel method, based on the notion of sequence, which goes beyond any previous described work, and we report on an extensive evaluation of its performance.

  2. Curvature and Tachibana numbers

    SciTech Connect

    Stepanov, Sergey E

    2011-07-31

    The aim of this paper is to define the rth Tachibana number t{sub r} of an n-dimensional compact oriented Riemannian manifold as the dimension of the space of conformally Killing r-forms, for r=1,2,...,n-1. We also describe properties of these numbers, by analogy with properties of the Betti numbers b{sub r} of a compact oriented Riemannian manifold. Bibliography: 25 titles.

  3. High Reynolds Number Research

    NASA Technical Reports Server (NTRS)

    Baals, D. D. (Editor)

    1977-01-01

    Fundamental aerodynamic questions for which high Reynolds number experimental capability is required are discussed. The operational characteristics and design features of the National Transonic Facility are reviewed.

  4. Universal Number Library

    SciTech Connect

    Lloyd, G. Scott

    2016-09-17

    This floating-point arithmetic library contains a software implementation of Universal Numbers (unums) as described by John Gustafson [1]. The unum format is a superset of IEEE 754 floating point with several advantages. Computing with unums provides more accurate answers without rounding errors, underflow or overflow. In contrast to fixed-sized IEEE numbers, a variable number of bits can be used to encode unums. This all allows number with only a few significant digits or with a small dynamic range to be represented more compactly.

  5. High-Reynolds Number Taylor-Couette Turbulence

    NASA Astrophysics Data System (ADS)

    Grossmann, Siegfried; Lohse, Detlef; Sun, Chao

    2016-01-01

    Taylor-Couette flow, the flow between two coaxial co- or counter-rotating cylinders, is one of the paradigmatic systems in the physics of fluids. The (dimensionless) control parameters are the Reynolds numbers of the inner and outer cylinders, the ratio of the cylinder radii, and the aspect ratio. One key response of the system is the torque required to retain constant angular velocities, which can be connected to the angular velocity transport through the gap. Whereas the low-Reynolds number regime was well explored in the 1980s and 1990s of the past century, in the fully turbulent regime major research activity developed only in the past decade. In this article, we review this recent progress in our understanding of fully developed Taylor-Couette turbulence from the experimental, numerical, and theoretical points of view. We focus on the parameter dependence of the global torque and on the local flow organization, including velocity profiles and boundary layers. Next, we discuss transitions between different (turbulent) flow states. We also elaborate on the relevance of this system for astrophysical disks (quasi-Keplerian flows). The review ends with a list of challenges for future research on turbulent Taylor-Couette flow.

  6. The Fibonacci Numbers.

    ERIC Educational Resources Information Center

    Onstad, Torgeir

    1991-01-01

    After a brief historical account of Leonardo Pisano Fibonacci, some basic results concerning the Fibonacci numbers are developed and proved, and entertaining examples are described. Connections are made between the Fibonacci numbers and the Golden Ratio, biological nature, and other combinatorics examples. (MDH)

  7. Templates, Numbers & Watercolors.

    ERIC Educational Resources Information Center

    Clemesha, David J.

    1990-01-01

    Describes how a second-grade class used large templates to draw and paint five-digit numbers. The lesson integrated artistic knowledge and vocabulary with their mathematics lesson in place value. Students learned how draftspeople use templates, and they studied number paintings by Charles Demuth and Jasper Johns. (KM)

  8. Avogadro's Number Ferromagnetically

    ERIC Educational Resources Information Center

    Houari, Ahmed

    2010-01-01

    Avogadro's number, usually denoted by N[subscript A], plays a fundamental role in both physics and chemistry. It defines the extremely useful concept of the mole, which is the base unit of the amount of matter in the international system of units. The fundamental character of this number can also be illustrated by its appearance in the definitions…

  9. Education by the Numbers

    ERIC Educational Resources Information Center

    Leadership, 2007

    2007-01-01

    Education, it seems, is increasingly driven by the numbers. Whether it is measuring student performance or a school district's ability to balance the books, one will find data out there about it. So much data, in fact, that it is difficult to sort through all the numbers to get the needed information. This article describes California's Ed-Data…

  10. Numbers Are Not Everything

    ERIC Educational Resources Information Center

    Cole, Milton W.

    2009-01-01

    Numbers--of publications, grant money, PhD students, and invited talks, for example--play too large a role in assessments of faculty. The author's thirty-five years of experience in higher education have convinced him that overreliance on such numbers is a big problem, especially, but not exclusively, in the sciences. Every scientist recognizes…

  11. Details of Exact Low Prandtl Number Boundary-Layer Solutions for Forced and For Free Convection

    NASA Technical Reports Server (NTRS)

    Sparrow, E. M.; Gregg, J. L.

    1959-01-01

    A detailed report is given of exact (numerical) solutions of the laminar-boundary-layer equations for the Prandtl number range appropriate to liquid metals (0.003 to 0.03). Consideration is given to the following situations: (1) forced convection over a flat plate for the conditions of uniform wall temperature and uniform wall heat flux, and (2) free convection over an isothermal vertical plate. Tabulations of the new solutions are given in detail. Results are presented for the heat-transfer and shear-stress characteristics; temperature and velocity distributions are also shown. The heat-transfer results are correlated in terms of dimensionless parameters that vary only slightly over the entire liquid-metal range. Previous analytical and experimental work on low Prandtl number boundary layers is surveyed and compared with the new exact solutions.

  12. DNA vaccines expressing the duck hepatitis B virus surface proteins lead to reduced numbers of infected hepatocytes and protect ducks against the development of chronic infection in a virus dose-dependent manner.

    PubMed

    Miller, Darren S; Kotlarski, Ieva; Jilbert, Allison R

    2006-07-20

    We tested the efficacy of DNA vaccines expressing the duck hepatitis B virus (DHBV) pre-surface (pre-S/S) and surface (S) proteins in modifying the outcome of infection in 14-day-old ducks. In two experiments, Pekin Aylesbury ducks were vaccinated on days 4 and 14 of age with plasmid DNA vaccines expressing either the DHBV pre-S/S or S proteins, or the control plasmid vector, pcDNA1.1Amp. All ducks were then challenged intravenously on day 14 of age with 5 x 10(7) or 5 x 10(8) DHBV genomes. Levels of initial DHBV infection were assessed using liver biopsy tissue collected at day 4 post-challenge (p.c.) followed and immunostained for DHBV surface antigen to determine the percentage of infected hepatocytes. All vector vaccinated ducks challenged with 5 x 10(7) and 5 x 10(8) DHBV genomes had an average of 3.21% and 20.1% of DHBV-positive hepatocytes respectively at day 4 p.c. and 16 out of 16 ducks developed chronic DHBV infection. In contrast, pre-S/S and S vaccinated ducks challenged with 5 x 10(7) DHBV genomes had reduced levels of initial infection with an average of 1.38% and 1.93% of DHBV-positive hepatocytes at day 4 p.c. respectively and 10 of 18 ducks were protected against chronic infection. The pre-S/S and the S DNA vaccinated ducks challenged with 5 x 10(8) DHBV genomes had an average of 31.5% and 9.2% of DHBV-positive hepatocytes on day 4 p.c. respectively and only 4 of the 18 vaccinated ducks were protected against chronic infection. There was no statistically significant difference in the efficacy of the DHBV pre-S/S or S DNA vaccines. In conclusion, vaccination of young ducks with DNA vaccines expressing the DHBV pre-S/S and S proteins induced rapid immune responses that reduced the extent of initial DHBV infection in the liver and prevented the development of chronic infection in a virus dose-dependent manner.

  13. Numbers in Action

    PubMed Central

    Rugani, Rosa; Sartori, Luisa

    2016-01-01

    Humans show a remarkable tendency to describe and think of numbers as being placed on a mental number line (MNL), with smaller numbers located on the left and larger ones on the right. Faster responses to small numbers are indeed performed on the left side of space, while responses to large numbers are facilitated on the right side of space (spatial-numerical association of response codes, SNARC effect). This phenomenon is considered the experimental demonstration of the MNL and has been extensively replicated throughout a variety of paradigms. Nevertheless, the majority of previous literature has mainly investigated this effect by means of response times and accuracy, whereas studies considering more subtle and automatic measures such as kinematic parameters are rare (e.g., in a reaching-to-grasp movement, the grip aperture is enlarged in responding to larger numbers than in responding to small numbers). In this brief review we suggest that numerical magnitude can also affect the what and how of action execution (i.e., temporal and spatial components of movement). This evidence could have large implications in the strongly debated issue concerning the effect of experience and culture on the orientation of MNL. PMID:27524965

  14. Numbers in Action.

    PubMed

    Rugani, Rosa; Sartori, Luisa

    2016-01-01

    Humans show a remarkable tendency to describe and think of numbers as being placed on a mental number line (MNL), with smaller numbers located on the left and larger ones on the right. Faster responses to small numbers are indeed performed on the left side of space, while responses to large numbers are facilitated on the right side of space (spatial-numerical association of response codes, SNARC effect). This phenomenon is considered the experimental demonstration of the MNL and has been extensively replicated throughout a variety of paradigms. Nevertheless, the majority of previous literature has mainly investigated this effect by means of response times and accuracy, whereas studies considering more subtle and automatic measures such as kinematic parameters are rare (e.g., in a reaching-to-grasp movement, the grip aperture is enlarged in responding to larger numbers than in responding to small numbers). In this brief review we suggest that numerical magnitude can also affect the what and how of action execution (i.e., temporal and spatial components of movement). This evidence could have large implications in the strongly debated issue concerning the effect of experience and culture on the orientation of MNL.

  15. Quantum random number generators

    NASA Astrophysics Data System (ADS)

    Herrero-Collantes, Miguel; Garcia-Escartin, Juan Carlos

    2017-01-01

    Random numbers are a fundamental resource in science and engineering with important applications in simulation and cryptography. The inherent randomness at the core of quantum mechanics makes quantum systems a perfect source of entropy. Quantum random number generation is one of the most mature quantum technologies with many alternative generation methods. This review discusses the different technologies in quantum random number generation from the early devices based on radioactive decay to the multiple ways to use the quantum states of light to gather entropy from a quantum origin. Randomness extraction and amplification and the notable possibility of generating trusted random numbers even with untrusted hardware using device-independent generation protocols are also discussed.

  16. Shear rotation numbers

    NASA Astrophysics Data System (ADS)

    Doeff, E.; Misiurewicz, M.

    1997-11-01

    This paper presents results on rotation numbers for orientation-preserving torus homeomorphisms homotopic to a Dehn twist. Rotation numbers and the rotation set for such homeomorphisms have been defined and initially investigated by the first author in a previous paper. Here we prove that each rotation number 0951-7715/10/6/017/img5 in the interior of the rotation set is realized by some compact invariant set, and that there is an ergodic measure on that set with mean rotation number 0951-7715/10/6/017/img5. It is also proved that the function which assigns its rotation set to such a homeomorphism is continuous. Finally, a counterexample is presented that shows that rational extremal points of the shear rotation set do not necessarily correspond to any periodic orbits.

  17. Quantum random number generator

    DOEpatents

    Pooser, Raphael C.

    2016-05-10

    A quantum random number generator (QRNG) and a photon generator for a QRNG are provided. The photon generator may be operated in a spontaneous mode below a lasing threshold to emit photons. Photons emitted from the photon generator may have at least one random characteristic, which may be monitored by the QRNG to generate a random number. In one embodiment, the photon generator may include a photon emitter and an amplifier coupled to the photon emitter. The amplifier may enable the photon generator to be used in the QRNG without introducing significant bias in the random number and may enable multiplexing of multiple random numbers. The amplifier may also desensitize the photon generator to fluctuations in power supplied thereto while operating in the spontaneous mode. In one embodiment, the photon emitter and amplifier may be a tapered diode amplifier.

  18. Discovering Avogadro's Number.

    ERIC Educational Resources Information Center

    Rieck, William A.

    1997-01-01

    Illustrates the use of an inductive approach that leads students to the discovery of Avogadro's number while integrating thinking, mathematical, and calculator skills in the process. An understanding of scientific notation and a calculator are required. (DDR)

  19. Genetics by the Numbers

    MedlinePlus

    ... View All Articles | Inside Life Science Home Page Genetics by the Numbers By Chelsea Toledo and Kirstie ... June 11, 2012 Scholars have been studying modern genetics since the mid-19th century, but even today ...

  20. Logo and Negative Numbers.

    ERIC Educational Resources Information Center

    Strawn, Candace A.

    1998-01-01

    Describes LOGO's turtle graphics capabilities based on a sixth-grade classroom's activities with negative numbers and Logo programming. A sidebar explains LOGO and offers suggestions to teachers for using LOGO effectively. (LRW)

  1. High Reynolds number and turbulence effects on aerodynamics and heat transfer in a turbine cascade

    NASA Technical Reports Server (NTRS)

    Yeh, Frederick C.; Hippensteele, Steven A.; Vanfossen, G. James; Poinsatte, Philip E.; Ameri, Ali

    1993-01-01

    Experimental data on pressure distribution and heat transfer on a turbine airfoil were obtained over a range of Reynolds numbers from 0.75 to 7.5 x 10 exp 6 and a range of turbulence intensities from 1.8 to about 15 percent. The purpose of this study was to obtain fundamental heat transfer and pressure distribution data over a wide range of high Reynolds numbers and to extend the heat transfer data base to include the range of Reynolds numbers encountered in the Space Shuttle main engine (SSME) turbopump turbines. Specifically, the study aimed to determine (1) the effect of Reynolds number on heat transfer, (2) the effect of upstream turbulence on heat transfer and pressure distribution, and (3) the relationship between heat transfer at high Reynolds numbers and the current data base. The results of this study indicated that Reynolds number and turbulence intensity have a large effect on both the transition from laminar to turbulent flow and the resulting heat transfer. For a given turbulence intensity, heat transfer for all Reynolds numbers at the leading edge can be correlated with the Frossling number developed for lower Reynolds numbers. For a given turbulence intensity, heat transfer for the airfoil surfaces downstream of the leading edge can be approximately correlated with a dimensionless parameter. Comparison of the experimental results were also made with a numerical solution from a two-dimensional Navier-Stokes code.

  2. Fibonacci's Forgotten Number

    ERIC Educational Resources Information Center

    Brown, Ezra; Brunson, Cornelius

    2008-01-01

    Fibonacci's forgotten number is the sexagesimal number 1;22,7,42,33,4,40, which he described in 1225 as an approximation to the real root of x[superscript 3] + 2x[superscript 2] + 10x - 20. In decimal notation, this is 1.36880810785...and it is correct to nine decimal digits. Fibonacci did not reveal his method. How did he do it? There is also a…

  3. Report number codes

    SciTech Connect

    Nelson, R.N.

    1985-05-01

    This publication lists all report number codes processed by the Office of Scientific and Technical Information. The report codes are substantially based on the American National Standards Institute, Standard Technical Report Number (STRN)-Format and Creation Z39.23-1983. The Standard Technical Report Number (STRN) provides one of the primary methods of identifying a specific technical report. The STRN consists of two parts: The report code and the sequential number. The report code identifies the issuing organization, a specific program, or a type of document. The sequential number, which is assigned in sequence by each report issuing entity, is not included in this publication. Part I of this compilation is alphabetized by report codes followed by issuing installations. Part II lists the issuing organization followed by the assigned report code(s). In both Parts I and II, the names of issuing organizations appear for the most part in the form used at the time the reports were issued. However, for some of the more prolific installations which have had name changes, all entries have been merged under the current name.

  4. Safety in glomerular numbers.

    PubMed

    Schreuder, Michiel F

    2012-10-01

    A low nephron number is, according to Brenner's hyperfiltration hypothesis, associated with hypertension, glomerular damage and proteinuria, and starts a vicious cycle that ends in renal failure over the long term. Nephron endowment is set during foetal life, and there is no formation of nephrons after 34-36 weeks of gestation, indicating that many factors before that time-point may have an impact on kidney development and reduce nephron numbers. Such factors include maternal malnutrition, stress, diseases, such as diabetes, uteroplacental insufficiency, maternal and neonatal drugs and premature birth. However, other congenital anomalies, such as renal hypoplasia, unilateral renal agenesis or multicystic dysplastic kidney, may also lead to a reduced nephron endowment, with an increased risk for hypertension, renal dysfunction and the need for renal replacement therapy. This review focuses on the causes and consequences of a low nephron endowment and will illustrate why there is safety in glomerular numbers.

  5. Beyond the Number Domain

    PubMed Central

    Cantlon, Jessica F.; Platt, Michael L.; Brannon, Elizabeth M.

    2009-01-01

    In a world without numbers, we would be unable to build a skyscraper, hold a national election, plan a wedding, or pay for a chicken at the market. The numerical symbols used in all these behaviors build on the approximate number system (ANS) which represents the number of discrete objects or events as a continuous mental magnitude. In this review, we first discuss evidence that the ANS bears a set of behavioral and brain signatures that are universally displayed across animal species, human cultures, and development. We then turn to the question of whether the ANS constitutes a specialized cognitive and neural domain--a question central to understanding how this system works, the nature of its evolutionary and developmental trajectory, and its physical instantiation in the brain. PMID:19131268

  6. Quantum random number generation

    SciTech Connect

    Ma, Xiongfeng; Yuan, Xiao; Cao, Zhu; Zhang, Zhen; Qi, Bing

    2016-06-28

    Quantum physics can be exploited to generate true random numbers, which play important roles in many applications, especially in cryptography. Genuine randomness from the measurement of a quantum system reveals the inherent nature of quantumness -- coherence, an important feature that differentiates quantum mechanics from classical physics. The generation of genuine randomness is generally considered impossible with only classical means. Based on the degree of trustworthiness on devices, quantum random number generators (QRNGs) can be grouped into three categories. The first category, practical QRNG, is built on fully trusted and calibrated devices and typically can generate randomness at a high speed by properly modeling the devices. The second category is self-testing QRNG, where verifiable randomness can be generated without trusting the actual implementation. The third category, semi-self-testing QRNG, is an intermediate category which provides a tradeoff between the trustworthiness on the device and the random number generation speed.

  7. Quantum random number generation

    DOE PAGES

    Ma, Xiongfeng; Yuan, Xiao; Cao, Zhu; ...

    2016-06-28

    Quantum physics can be exploited to generate true random numbers, which play important roles in many applications, especially in cryptography. Genuine randomness from the measurement of a quantum system reveals the inherent nature of quantumness -- coherence, an important feature that differentiates quantum mechanics from classical physics. The generation of genuine randomness is generally considered impossible with only classical means. Based on the degree of trustworthiness on devices, quantum random number generators (QRNGs) can be grouped into three categories. The first category, practical QRNG, is built on fully trusted and calibrated devices and typically can generate randomness at a highmore » speed by properly modeling the devices. The second category is self-testing QRNG, where verifiable randomness can be generated without trusting the actual implementation. The third category, semi-self-testing QRNG, is an intermediate category which provides a tradeoff between the trustworthiness on the device and the random number generation speed.« less

  8. Quantum random number generation

    NASA Astrophysics Data System (ADS)

    Ma, Xiongfeng; Yuan, Xiao; Cao, Zhu; Qi, Bing; Zhang, Zhen

    2016-06-01

    Quantum physics can be exploited to generate true random numbers, which have important roles in many applications, especially in cryptography. Genuine randomness from the measurement of a quantum system reveals the inherent nature of quantumness—coherence, an important feature that differentiates quantum mechanics from classical physics. The generation of genuine randomness is generally considered impossible with only classical means. On the basis of the degree of trustworthiness on devices, quantum random number generators (QRNGs) can be grouped into three categories. The first category, practical QRNG, is built on fully trusted and calibrated devices and typically can generate randomness at a high speed by properly modelling the devices. The second category is self-testing QRNG, in which verifiable randomness can be generated without trusting the actual implementation. The third category, semi-self-testing QRNG, is an intermediate category that provides a tradeoff between the trustworthiness on the device and the random number generation speed.

  9. Minimal Niven Numbers

    DTIC Science & Technology

    2007-12-26

    265–275. [7] H. G. Grundman, ‘ Sequences of consecutive Niven numbers’, Fibonacci Quart. 32 (1994), 174–175. [8] D. R. Heath-Brown and S. Konyagin...paper, we define a natural sequence in relation to q-Niven numbers. For a fixed but arbitrary k ∈ N and a base q ≥ 2, one may ask whether or not there...other words, ak is the smallest Niven number whose sum of the digits is a given positive integer k. We denote by ck the companion sequence ck = ak/k

  10. Viscous range of turbulent scalar of large Prandtl number

    NASA Astrophysics Data System (ADS)

    Qian, J.

    1995-02-01

    The analytical theory of a turbulent scalar, developed in previous papers is extended to the case of large Prandtl number. The fluctuation character of the least principal rate of strain gamma has an important effect upon the scalar spectrum. The scalar variance spectrum in the viscous range is F(k) = 4.472 (nu/epsilon)(exp 1/2) chi k(exp -1) H(x), X is identical to (k/k(sub b))(exp 2), H(x) is a dimensionless universal function and is determined by solving numerically the closed spectral dynamical equations. A simple fitting formula of the numerical result is H(x) = 0.7687 exp(- 3.79x) + 0.2313 exp(-11.13 x), which corresponds a two-values fluctuation model of gamma. Here upsilon is the kinematic viscosity, k(sub b) is identical to (epsilon/upsilon mu(exp 2))(exp 1/4) is the Batchelor wavenumber, mu is the scalar diffusivity, and epsilon and eni are respectively the energy and variance dissipation rates.

  11. Introducing Complex Numbers

    ERIC Educational Resources Information Center

    Trudgian, Timothy

    2009-01-01

    One of the difficulties in any teaching of mathematics is to bridge the divide between the abstract and the intuitive. Throughout school one encounters increasingly abstract notions, which are more and more difficult to relate to everyday experiences. This article examines a familiar approach to thinking about negative numbers, that is an…

  12. The Net by Numbers.

    ERIC Educational Resources Information Center

    McMurdo, George

    1996-01-01

    The expansion of the commercial Internet has encouraged the interpretation of the Internet and its uses as a potential marketing medium. Examines statistical and demographic information about the Internet including number of Internet hosts and World Wide Web servers, and estimates of Internet users; and raises questions about definitions and…

  13. ALARA notes, Number 8

    SciTech Connect

    Khan, T.A.; Baum, J.W.; Beckman, M.C.

    1993-10-01

    This document contains information dealing with the lessons learned from the experience of nuclear plants. In this issue the authors tried to avoid the `tyranny` of numbers and concentrated on the main lessons learned. Topics include: filtration devices for air pollution abatement, crack repair and inspection, and remote handling equipment.

  14. Paint by Numbers Revived!

    ERIC Educational Resources Information Center

    Hahn, Nic

    2012-01-01

    Remember paint by numbers? This revived trend was a perfect solution to teaching geometric shapes to the author's first-grade students. Geometric shapes are identified and used in early elementary art classrooms, but this lesson gives students a deeper understanding of shape, encourages problem-solving, and makes a strong correlation between math…

  15. "Better than Their Numbers"

    ERIC Educational Resources Information Center

    Cech, Scott J.

    2008-01-01

    This article discusses College Summit, a nonprofit effort centered around the premise that there is a sizable number of students who are more capable of college academics than their test scores and grade point averages suggest. Its four-day summer sessions are focused not on ramping up students' academic performance but in mining students'…

  16. Number in Classifier Languages

    ERIC Educational Resources Information Center

    Nomoto, Hiroki

    2013-01-01

    Classifier languages are often described as lacking genuine number morphology and treating all common nouns, including those conceptually count, as an unindividuated mass. This study argues that neither of these popular assumptions is true, and presents new generalizations and analyses gained by abandoning them. I claim that no difference exists…

  17. Analogies for Avogadro's Number.

    ERIC Educational Resources Information Center

    Poskozim, Paul S.; And Others

    1986-01-01

    Reviews analogies used to try to capture the concept of the magnitude of Avogadro's number, including analogies related to small/tiny objects, counting, people, water, and money. Also presents several new ones which are based on modern computers and printers. (JN)

  18. Playing the Numbers

    ERIC Educational Resources Information Center

    Doyle, William R.

    2010-01-01

    Some say that the educators now have a gender-stratified system of higher education, with nearly 60 percent of all undergraduates being women and fewer men attending each year. The battle for gender equity for women in higher education has been a long and contentious one. In the decades since, increasing numbers of women have gone to college, to…

  19. Chippy's Computer Numbers.

    ERIC Educational Resources Information Center

    Girard, Suzanne; Willing, Kathlene R.

    Intended for young children just becoming familiar with computers, this counting book introduces and reinforces new computer vocabulary and concepts. The numbers, from one to twelve, are presented along with words and illustrations from the world of computers, allowing for different activities in which children can count or match and name the…

  20. Vortex shedding from a hydrofoil at high Reynolds number

    NASA Astrophysics Data System (ADS)

    Bourgoyne, Dwayne A.; Ceccio, Steven L.; Dowling, David R.

    2005-05-01

    High Reynolds number (Re) wall-bounded turbulent flows occur in many hydro- and aerodynamic applications. However, the limited amount of high-Re experimental data has hampered the development and validation of scaling laws and modelling techniques applicable to such flows. This paper presents measurements of the turbulent flow near the trailing edge of a two-dimensional lifting surface at chord-based Reynolds numbers, Re_{C}, typical of heavy-lift aircraft wings and full-scale ship propellers. The experiments were conducted in the William B. Morgan Large Cavitation Channel at flow speeds from 0.50 to 18.3ms(-1) with a cambered hydrofoil having a 3.05m span and a 2.13m chord that generated 60 metric tons of lift at the highest flow speed, Re_{C}{≈}50{×}10(6) . Flow-field measurements concentrated on the foil's near wake and include results from trailing edges having terminating bevel angles of 44(°) and 56(°) . Although generic turbulent boundary layer and wake characteristics were found at any fixed Re_{C} in the trailing-edge region, the variable strength of near-wake vortex shedding caused the flow-field fluctuations to be Reynolds-number and trailing-edge-geometry dependent. In the current experiments, vortex-shedding strength peaked at Re_{C}{=}4{×}10(6) with the 56(°) bevel-angle trailing edge. A dimensionless scaling for this phenomenon constructed from the free-stream speed, the wake thickness, and an average suction-side shear-layer vorticity at the trailing edge collapses the vortex-shedding strength measurements for 1.4{×}10(6}{≤) Re_{C}{≤}50{×}10(6) from both trailing edges and from prior measurements on two-dimensional struts at Re_{C}{˜}2{×}10(6) with asymmetrical trailing edges.

  1. The Remarkable Number "1"

    NASA Astrophysics Data System (ADS)

    Allen, G. Donald

    2014-09-01

    In human history, the origin of the numbers came from definite practical needs. Indeed, there is strong evidence that numbers were created before writing. The number "1", dating back at least 20,000 years, was found as a counting symbol on a bone. The famous statement by the German mathematician Leopold Kronecker (1823-1891), "God made the integers; all else is the work of man," has spawned a lively modern philosophical discussion, and this discussion begins by trying to get a philosophical handle on "1." This approach remains under heavy discussion, and is more-or-less unresolved (Frege in Die Grundlagen der Arithmetik (English: The foundations of arithmetic). Polhman, 1884). In this note, we consider the many facets of "one" in it many guises and applications. Nonetheless, "one" has multiple meanings, from the very practical to the abstract, from mathematics to science to basically everything. We examine here a mere slice of mathematical history with a focus on the most basic and applicable concept therein. It troubles many, particularly students, even today.

  2. High Reynolds Number Effects on Multi-Hole Probes and Hot Wire Anemometers

    NASA Technical Reports Server (NTRS)

    Ramachandran, N.; Smith, A.; Gerry, G.; Kauffman, W.

    1995-01-01

    The paper reports on the results from an experimental investigation of the response of multi-hole and hot wire probes at high flow Reynolds numbers (Re approx. 10(exp 6)). The limited results available in literature for 5-hole probes are restricted to Re approx. 10(exp 4). The experiment aims to investigate the probe response (in terms of dimensionless pressure ratios, characterizing pitch, and yaw angles and the total and static pressures) at high Re values and to gauge their effect on the calculated velocity vector. Hot wire calibrations were also undertaken with a parametric variation of the flow pressure, velocity and temperature. Different correction and calibration schemes are sought to be tested against the acquired data set. The data is in the analysis stage at the present time. The test provided good benchmark quality data that can be used to test future calibration and testing methods.

  3. High Reynolds Number Turbulence

    DTIC Science & Technology

    2007-03-27

    wall relation of McKeon et al. (2005), and the results for the smallest sandgrain roughness used by Nikuradse (1933). 3 57xI03 "eI : uhp - 2 8 1 6 8 x l 0...Reynolds Number Turbulent Pipe Flow," ASME International Mechanical Engineering Conference and Exposition, Washington, D.C., November 16-21, 2003... Engineering Sciences, Vol. 365 (1852) pp. 699-714, 2007. 14 ’Pipe flow roughness Allen, J.J., Shockling, M.A. and Smits, A.J. "Effects of a machined rough

  4. Is Baryon Number Conserved?

    NASA Astrophysics Data System (ADS)

    Pati, Jogesh C.; Salam, Abdus

    We suggest that baryon-number conservation may not be absolute and that an integrally charged quark may disintegrate into two leptons and an antilepton with a coupling strength G Bmp2≲ 10-9. On the other hand, if quarks are much heavier than low-lying hadrons, the decay of a three-quark system like the proton is highly forbidden (proton lifetime ≳ 1028 y). Motivation for these ideas appears to arise within a unified theory of hadrons and leptons and their gauge interactions. We emphasize the consequences of such a possibility for real quark searches.

  5. Rare Copy Number Variants

    PubMed Central

    Grozeva, Detelina; Kirov, George; Ivanov, Dobril; Jones, Ian R.; Jones, Lisa; Green, Elaine K.; St Clair, David M.; Young, Allan H.; Ferrier, Nicol; Farmer, Anne E.; McGuffin, Peter; Holmans, Peter A.; Owen, Michael J.; O’Donovan, Michael C.; Craddock, Nick

    2015-01-01

    Context Recent studies suggest that copy number variation in the human genome is extensive and may play an important role in susceptibility to disease, including neuropsychiatric disorders such as schizophrenia and autism. The possible involvement of copy number variants (CNVs) in bipolar disorder has received little attention to date. Objectives To determine whether large (>100 000 base pairs) and rare (found in <1% of the population) CNVs are associated with susceptibility to bipolar disorder and to compare with findings in schizophrenia. Design A genome-wide survey of large, rare CNVs in a case-control sample using a high-density microarray. Setting The Wellcome Trust Case Control Consortium. Participants There were 1697 cases of bipolar disorder and 2806 nonpsychiatric controls. All participants were white UK residents. Main Outcome Measures Overall load of CNVs and presence of rare CNVs. Results The burden of CNVs in bipolar disorder was not increased compared with controls and was significantly less than in schizophrenia cases. The CNVs previously implicated in the etiology of schizophrenia were not more common in cases with bipolar disorder. Conclusions Schizophrenia and bipolar disorder differ with respect to CNV burden in general and association with specific CNVs in particular. Our data are consistent with the possibility that possession of large, rare deletions may modify the phenotype in those at risk of psychosis: those possessing such events are more likely to be diagnosed as having schizophrenia, and those without them are more likely to be diagnosed as having bipolar disorder. PMID:20368508

  6. Importance of wave-number dependence of Biot numbers in one-sided models of evaporative Marangoni instability: Horizontal layer and spherical droplet

    NASA Astrophysics Data System (ADS)

    Machrafi, H.; Rednikov, A.; Colinet, P.; Dauby, P. C.

    2015-05-01

    A one-sided model of the thermal Marangoni instability owing to evaporation into an inert gas is developed. Two configurations are studied in parallel: a horizontal liquid layer and a spherical droplet. With the dynamic gas properties being admittedly negligible, one-sided approaches typically hinge upon quantifying heat and mass transfer through the gas phase by means of transfer coefficients (like in the Newton's cooling law), which in dimensionless terms eventually corresponds to using Biot numbers. Quite a typical arrangement encountered in the literature is a constant Biot number, the same for perturbations of different wavelengths and maybe even the same as for the reference state. In the present work, we underscore the relevance of accounting for its wave-number dependence, which is especially the case in the evaporative context with relatively large values of the resulting effective Biot number. We illustrate the effect in the framework of the Marangoni instability thresholds. As a concrete example, we consider HFE-7100 (a standard refrigerant) for the liquid and air for the inert gas.

  7. Importance of wave-number dependence of Biot numbers in one-sided models of evaporative Marangoni instability: Horizontal layer and spherical droplet.

    PubMed

    Machrafi, H; Rednikov, A; Colinet, P; Dauby, P C

    2015-05-01

    A one-sided model of the thermal Marangoni instability owing to evaporation into an inert gas is developed. Two configurations are studied in parallel: a horizontal liquid layer and a spherical droplet. With the dynamic gas properties being admittedly negligible, one-sided approaches typically hinge upon quantifying heat and mass transfer through the gas phase by means of transfer coefficients (like in the Newton's cooling law), which in dimensionless terms eventually corresponds to using Biot numbers. Quite a typical arrangement encountered in the literature is a constant Biot number, the same for perturbations of different wavelengths and maybe even the same as for the reference state. In the present work, we underscore the relevance of accounting for its wave-number dependence, which is especially the case in the evaporative context with relatively large values of the resulting effective Biot number. We illustrate the effect in the framework of the Marangoni instability thresholds. As a concrete example, we consider HFE-7100 (a standard refrigerant) for the liquid and air for the inert gas.

  8. Experimental investigation of free-convection heat transfer in vertical tube at large Grashof numbers / E. R. G. Eckert, A. J. Diaguila

    NASA Technical Reports Server (NTRS)

    Eckert, E R G; Diaguila, A J

    1952-01-01

    Local free-convection heat-transfer coefficients and temperature fields in the turbulent flow range were obtained within a vertical, stationary tube closed at the boom, heated along its walls, and having a length-to-diameter ratio of 5. Convective heat-transfer coefficients were correlated by the general relations for free-convection heat transfer. These coefficients, converted to dimensionless Nusselt numbers were 35 percent below known relations for vertical flat plates. Air temperature measurements within the tube indicated a thin boundary layer along the heated wall surface and unstable conditions in the air flow.

  9. An introduction to hyperharmonic numbers

    NASA Astrophysics Data System (ADS)

    Cereceda, José Luis

    2015-04-01

    In this note, we deal with a generalization of the harmonic numbers proposed by Conway and Guy in their Book of Numbers, namely, the so-called hyperharmonic numbers. Our main aim is to prove, by mathematical induction, the formula defining the hyperharmonic numbers in terms of ordinary harmonic numbers. Moreover, we calculate the hyperharmonic numbers as the derivative of a certain binomial coefficient.

  10. Low Reynolds number multiple-time-scale turbulence model and calculations of steady and pulsating shear layers

    NASA Technical Reports Server (NTRS)

    Kim, Sang-Wook

    1992-01-01

    A low Reynolds number multiple-time-scale turbulence model (LMS) and its application to fully developed turbulent channel flows and pulsating pipe flows are presented. The LMS can describe the inequilibrium turbulence phenomena down to the viscous sublayer. The calculated fluid flow and turbulence fields for the channel flows are in better agreement with the direct numerical simulation (DNS) results than those obtained using a Reynolds stress turbulence model, and the calculated near-wall dissipation rates are in qualitatively correct agreement with the DNS results. The LMS also successfully predicts the rapidly varying phase-lead of the wall shearing stress that occurs in a narrow range of the dimensionless frequency omega (+) = (omega x nu)/(upsilon x tau(exp2)) for the pulsating pipe flows while various other turbulence models fail to predict this phenomenon, and the LMS yields significantly improved numerical results for a wide range of the dimensionless frequency compared with those obtained using a rapid distortion theory (RDT).

  11. CRC octane number requirement survey 1992

    SciTech Connect

    Not Available

    1993-08-01

    An annual statistical survey of octane number requirements of current model vehicles is conducted by the Coordinating Research Council, Inc. Test data have been obtained by ten companies on 184 1992 vehicles including passenger cars and light-duty trucks and vans, of which 88 were equipped with knock sensors. Octane number requirements were determined by testing at maximum-throttle conditions, as well as at part-throttle, with four unleaded fuel series of varying sensitivities, one containing 15 percent methyl tertiary butyl ether. Requirements are expressed as the (R+M)/2 octane number, Research octane number, and Motor octane number of the reference fuel producing knock which was recurrent and repeatable at the lowest audible level. Estimated octane number requirements for the total vehicles are weighted in proportion to the 1992 vehicle model production and/or sales figures. The octane number requirements of 1992 models with average sensitivity unleaded fuels were 85.1 (R+M)/2 octane numbers at the 50 percent satisfaction level, and 92.0 (R+M)/2 octane numbers at the 90 percent satisfaction level. In order to make a more powerful test of statistical significance of the FBRUM fuel series, the 1991 ONRS was pooled with the 1992 ONRS and compared with the pooled data for the FBRU fuel series. There was no significant difference between the two fuel series up to about 90 percent satisfaction. Beyond 90 percent satisfaction, the variability in the data is high.

  12. CRC octane-number-requirement survey, 1990

    SciTech Connect

    Not Available

    1991-07-01

    An annual statistical survey of octane number requirements of current model vehicles is conducted by the Coordinating Research Council, Inc. Test data have been obtained by seventeen companies on 356 1990 vehicles including passenger cars and light-duty trucks and vans, of which 169 were equipped with knock sensors. Octane number requirements were determined by testing at maximum-throttle conditions, as well as at part-throttle, with three unleaded fuel series of varying sensitivities. Requirements are expressed as the (R+M)/2 octane number, Research octane number, and Motor octane number of the reference fuel producing knock which was recurrent and repeatable at the lowest audible level. Estimated octane number requirements for the total vehicles are weighted in proportion to the 1990 vehicle model production and/or sales figures. The octane number requirements of 1990 models with average sensitivity unleaded fuels were 85.4 (R+M)/2 octane numbers at the 50 percent satisfaction level, and 89.2 (R+M)/2 octane numbers at the 90 percent satisfaction level.

  13. CRC octane number requirement survey for 1989

    SciTech Connect

    Not Available

    1990-08-01

    An annual statistical survey of octane number requirements of current model vehicles is conducted by the Coordinating Research Council, Inc. Test data have been obtained by eighteen companies on 391 1989 vehicles including passenger cars and light-duty trucks and vans, of which 179 were equipped with knock sensors. Maximum octane number requirements were determined by testing at maximum-throttle conditions, as well as at part-throttle, with three unleaded fuel series of varying sensitivities. Requirements are expressed as the (R+M)/2 octane number, Research octane number, and Motor octane number of the reference fuel producing knock which was recurrent and repeatable at the lowest audible level. Estimated octane number requirements for the total vehicles are weighted in proportion to the 1989 vehicle model production and/or sales figures. The maximum octane number requirements of 1989 models with average sensitivity unleaded fuels were 85.1 (R+M)/2 octane numbers at the 50 percent satisfaction level, and 89.2 (R+M)/2 octane numbers at the 90 percent satisfaction level. Comparison with previous Surveys are made in this report.

  14. Beyond natural numbers: negative number representation in parietal cortex.

    PubMed

    Blair, Kristen P; Rosenberg-Lee, Miriam; Tsang, Jessica M; Schwartz, Daniel L; Menon, Vinod

    2012-01-01

    Unlike natural numbers, negative numbers do not have natural physical referents. How does the brain represent such abstract mathematical concepts? Two competing hypotheses regarding representational systems for negative numbers are a rule-based model, in which symbolic rules are applied to negative numbers to translate them into positive numbers when assessing magnitudes, and an expanded magnitude model, in which negative numbers have a distinct magnitude representation. Using an event-related functional magnetic resonance imaging design, we examined brain responses in 22 adults while they performed magnitude comparisons of negative and positive numbers that were quantitatively near (difference <4) or far apart (difference >6). Reaction times (RTs) for negative numbers were slower than positive numbers, and both showed a distance effect whereby near pairs took longer to compare. A network of parietal, frontal, and occipital regions were differentially engaged by negative numbers. Specifically, compared to positive numbers, negative number processing resulted in greater activation bilaterally in intraparietal sulcus (IPS), middle frontal gyrus, and inferior lateral occipital cortex. Representational similarity analysis revealed that neural responses in the IPS were more differentiated among positive numbers than among negative numbers, and greater differentiation among negative numbers was associated with faster RTs. Our findings indicate that despite negative numbers engaging the IPS more strongly, the underlying neural representation are less distinct than that of positive numbers. We discuss our findings in the context of the two theoretical models of negative number processing and demonstrate how multivariate approaches can provide novel insights into abstract number representation.

  15. Stochastic variation in Cardamine hirsuta petal number

    PubMed Central

    Monniaux, Marie; Pieper, Bjorn; Hay, Angela

    2016-01-01

    Background and Aims Floral development is remarkably robust in terms of the identity and number of floral organs in each whorl, whereas vegetative development can be quite plastic. This canalization of flower development prevents the phenotypic expression of cryptic genetic variation, even in fluctuating environments. A cruciform perianth with four petals is a hallmark of the Brassicaceae family, typified in the model species Arabidopsis thaliana. However, variable petal loss is found in Cardamine hirsuta, a genetically tractable relative of A. thaliana. Cardamine hirsuta petal number varies in response to stochastic, genetic and environmental perturbations, which makes it an interesting model to study mechanisms of decanalization and the expression of cryptic variation. Methods Multitrait quantitative trait locus (QTL) analysis in recombinant inbred lines (RILs) was used to identify whether the stochastic variation found in C. hirsuta petal number had a genetic basis. Key Results Stochastic variation (standard error of the average petal number) was found to be a heritable phenotype, and four QTL that influenced this trait were identified. The sensitivity to detect these QTL effects was increased by accounting for the effect of ageing on petal number variation. All QTL had significant effects on both average petal number and its standard error, indicating that these two traits share a common genetic basis. However, for some QTL, a degree of independence was found between the age of the flowers where allelic effects were significant for each trait. Conclusions Stochastic variation in C. hirsuta petal number has a genetic basis, and common QTL influence both average petal number and its standard error. Allelic variation at these QTL can, therefore, modify petal number in an age-specific manner via effects on the phenotypic mean and stochastic variation. These results are discussed in the context of trait evolution via a loss of robustness. PMID:26346720

  16. Percents Are Not Natural Numbers

    ERIC Educational Resources Information Center

    Jacobs, Jennifer A.

    2013-01-01

    Adults are prone to treating percents, one representational format of rational numbers, as novel cases of natural number. This suggests that percent values are not differentiated from natural numbers; a conceptual shift from the natural numbers to the rational numbers has not yet occurred. This is most surprising, considering people are inundated…

  17. Number Sense in the Transition from Natural to Rational Numbers

    ERIC Educational Resources Information Center

    Van Hoof, Jo; Verschaffel, Lieven; Van Dooren, Wim

    2017-01-01

    Background: Rational numbers are of critical importance both in mathematics and in other fields of science. However, they form a stumbling block for learners. One widely known source of the difficulty learners have with rational numbers is the natural number bias, that is the tendency to (inappropriately) apply natural number properties in…

  18. Gene copy number and malaria biology

    PubMed Central

    Anderson, Tim J.C.; Patel, Jigar; Ferdig, Michael T.

    2010-01-01

    Alteration in gene copy number provides a simple way to change expression levels and alter phenotype. This was fully appreciated by bacteriologists more than 25 years ago, but the extent and implications of copy number polymorphism (CNP) have only recently become apparent in other organisms. New methods demonstrate the ubiquity of CNPs in eukaryotes and their medical importance in humans. CNP is also widespread in the Plasmodium falciparum genome and has an important and underappreciated role in determining phenotype. In this review, we summarize the distribution of CNP, its evolutionary dynamics within populations, its functional importance and its mode of evolution. PMID:19559648

  19. Parametric number covariance in quantum chaotic spectra.

    PubMed

    Vinayak; Kumar, Sandeep; Pandey, Akhilesh

    2016-03-01

    We study spectral parametric correlations in quantum chaotic systems and introduce the number covariance as a measure of such correlations. We derive analytic results for the classical random matrix ensembles using the binary correlation method and obtain compact expressions for the covariance. We illustrate the universality of this measure by presenting the spectral analysis of the quantum kicked rotors for the time-reversal invariant and time-reversal noninvariant cases. A local version of the parametric number variance introduced earlier is also investigated.

  20. Number theory meets high energy physics

    NASA Astrophysics Data System (ADS)

    Todorov, Ivan

    2017-03-01

    Feynman amplitudes in perturbative quantum field theory are being expressed in terms of an algebra of functions, extending the familiar logarithms, and associated numbers— periods. The study of these functions (including hyperlogarithms) and numbers (like the multiple zeta values), that dates back to Leibniz and Euler, has attracted anew the interest of algebraic geometers and number theorists during the last decades. The two originally independent developments are recently coming together in an unlikely collaboration between particle physics and what were regarded as the most abstruse branches of mathematics.

  1. Representing Numbers: Prime and Irrational

    ERIC Educational Resources Information Center

    Zazkis, Rina

    2005-01-01

    This article draws an analogy between prime and irrational numbers with respect to how these numbers are defined and how they are perceived by learners. Excerpts are presented from two research studies: a study on understanding prime numbers by pre-service elementary school teachers and a study on understanding irrational numbers by pre-service…

  2. Lattice animals on a staircase and Fibonacci numbers

    NASA Astrophysics Data System (ADS)

    Turban, L.

    2000-04-01

    We study the statistics of column-convex lattice animals resulting from the stacking of squares on a single or double staircase. We obtain exact expressions for the number of animals with a given length and area, their mean length and their mean height. These objects are closely related to Fibonacci numbers. On a single staircase, the total number of animals with area k is given by the Fibonacci number Fk .

  3. New expressions to describe solution nonideal osmotic pressure, freezing point depression, and vapor pressure.

    PubMed

    Fullerton, G D; Zimmerman, R J; Cantu, C; Cameron, I L

    1992-12-01

    New empirical expressions for osmotic pressure, freezing point depression, and vapor pressure are proposed based on the concepts of volume occupancy and (or) hydration force. These expressions are in general inverse relationships in comparison to the standard ideal expressions for the same properties. The slopes of the new equations are determined by the molecular weight of the solute and known constants. The accuracy and precision of the molecular weights calculated from the slope are identical and approximately 1% for the experiments reported here. The nonideality of all three colligative expressions is described by a dimensionless constant called the solute-solvent interaction parameter I. The results on sucrose have the same I = 0.26 for all three solution properties. The nonideality parameter I increased from 0.26 on sucrose to 1.7 on hemoglobin to successfully describe the well-known nonideal response of macromolecules.

  4. 15. Stress Sheet, Truss number 2, span number 6, Superior ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    15. Stress Sheet, Truss number 2, span number 6, Superior Avenue viaduct. Drawing courtesy Engineering Dept., City of Cleveland. - Superior Avenue Viaduct, Cleveland East & West side, Cuyahoga Valley Vicinity, Cleveland, Cuyahoga County, OH

  5. Toddlers' Spontaneous Attention to Number and Verbal Number Quantification

    ERIC Educational Resources Information Center

    Li, Xia

    2009-01-01

    "S"pontaneous "a"ttention to "n"umber (SAN) is the tendency to notice the relatively abstract attribute of number despite the presence of other attributes. According to nativists, an innate concept of one to three directs young children's attention to these "intuitive numbers" in everyday situations--even before they acquire language. According to…

  6. Natural Number Bias in Operations with Missing Numbers

    ERIC Educational Resources Information Center

    Christou, Konstantinos P.

    2015-01-01

    This study investigates the hypothesis that there is a natural number bias that influences how students understand the effects of arithmetical operations involving both Arabic numerals and numbers that are represented by symbols for missing numbers. It also investigates whether this bias correlates with other aspects of students' understanding of…

  7. Introducing Number and Arithmetic Concepts with Number Sticks.

    ERIC Educational Resources Information Center

    Baroody, Arthur J.

    1993-01-01

    This article compares the relative merits of using Cuisenaire rods (unsegmented, unnumbered, and representing continuous quantities) and number sticks (segmented, numbered, and representing discrete quantities) to introduce number and arithmetic concepts to beginning students or students with learning difficulties or mental disabilities. (DB)

  8. Reynolds and froude number effect on the flow past an interface-piercing circular cylinder

    NASA Astrophysics Data System (ADS)

    Koo, Bonguk; Yang, Jianming; Yeon, Seong Mo; Stern, Frederick

    2014-09-01

    The two-phase turbulent flow past an interface-piercing circular cylinder is studied using a high-fidelity orthogonal curvilinear grid solver with a Lagrangian dynamic subgrid-scale model for large-eddy simulation and a coupled level set and volume of fluid method for air-water interface tracking. The simulations cover the sub-critical and critical and post critical regimes of the Reynolds and sub and super-critical Froude numbers in order to investigate the effect of both dimensionless parameters on the flow. Significant changes in flow features near the air-water interface were observed as the Reynolds number was increased from the sub-critical to the critical regime. The interface makes the separation point near the interface much delayed for all Reynolds numbers. The separation region at intermediate depths is remarkably reduced for the critical Reynolds number regime. The deep flow resembles the single-phase turbulent flow past a circular cylinder, but includes the effect of the free-surface and the limited span length for sub-critical Reynolds numbers. At different Froude numbers, the air-water interface exhibits significantly changed structures, including breaking bow waves with splashes and bubbles at high Froude numbers. Instantaneous and mean flow features such as interface structures, vortex shedding, Reynolds stresses, and vorticity transport are also analyzed. The results are compared with reference experimental data available in the literature. The deep flow is also compared with the single-phase turbulent flow past a circular cylinder in the similar ranges of Reynolds numbers. Discussion is provided concerning the limitations of the current simulations and available experimental data along with future research

  9. Number Tracks, Number Lines, Number Strips Are They All the Same?

    ERIC Educational Resources Information Center

    Iannone, Paola

    2006-01-01

    In this article, the author argues that there is a big conceptual difference between number lines and number strips and that number lines should be consistently used as early as Y1. Her interest in the use of the number line as a powerful image of the real numbers, and how this is introduced in the early years, comes from her own experience as a…

  10. Relating Mason number to Bingham number in magnetorheological fluids

    NASA Astrophysics Data System (ADS)

    Sherman, Stephen G.; Becnel, Andrew C.; Wereley, Norman M.

    2015-04-01

    Magnetorheological (MR) fluids are described using two nondimensional numbers, the Bingham and Mason numbers. The Mason number is the ratio of particle magnetic forces to viscous forces and describes the behavior of MR fluids at the microscopic, particle level scale. At the macroscopic, continuum scale, Bingham number is the ratio of yield stress to viscous stress, and describes the bulk motion of the fluid. If these two nondimensional numbers can be related, then microscopic models can be directly compared to macroscopic results. We show that if microscopic and macroscopic forces are linearly related, then Bingham and Mason number are inversely related, or, alternatively, that the product of the Bingham number and the Mason number is a constant. This relationship is experimentally validated based on measurements of apparent viscosity on a high shear rate, γ ˙ ≈ 10 000s-1, Searle cell rheometer. This relationship between Mason number and Bingham number is then used to analyze a Mason number based result, and is also used to inform the MR fluid device design process.

  11. Stability of the shape of a translating viscoelastic drop at low Reynolds number

    NASA Astrophysics Data System (ADS)

    Wu, H.; Haj-Hariri, H.; Borhan, A.

    2012-11-01

    We examine the stability of the shape of a viscoelastic drop translating in an immiscible, otherwise quiescent Newtonian fluid at low Reynolds number. Non-Newtonian stresses in the drop phase are characterized by the finitely extensible nonlinear elastic-Chilcott-Rallison model. A boundary integral method is used to numerically examine the time-evolution of initially perturbed drop shapes over a range of dimensionless parameters. For sufficiently small capillary numbers, the drop achieves an oblate spheroidal steady shape. For large initial deformations or capillary numbers, however, the drop deforms continuously and eventually breaks up through either the formation of an elongated tail or the development of a re-entrant cavity at its trailing end. These mechanisms of drop breakup are qualitatively similar to those reported earlier for Newtonian drops [C. J. Koh and L. G. Leal, Phys. Fluids A 1, 1309 (1989), 10.1063/1.857359; C. Pozrikidis, J. Fluid Mech. 210, 1 (1990), 10.1017/S0022112090001203; H. A. Stone, Annu. Rev. Fluid Mech. 26, 65 (1994), 10.1146/annurev.fl.26.010194.000433]. Compared to the case of a Newtonian drop, drop phase elasticity is found to have a stabilizing (destabilizing) effect for initially oblate (prolate) shape perturbations, due to the development of polymeric stresses caused by deformation of polymer chains in alignment with streamlines of the flow. Polymer viscosity has a strong influence on the stability of the shape of drops, whereas polymer relaxation time and extensibility have relatively weak influences.

  12. Number games, magnitude representation, and basic number skills in preschoolers.

    PubMed

    Whyte, Jemma Catherine; Bull, Rebecca

    2008-03-01

    The effect of 3 intervention board games (linear number, linear color, and nonlinear number) on young children's (mean age = 3.8 years) counting abilities, number naming, magnitude comprehension, accuracy in number-to-position estimation tasks, and best-fit numerical magnitude representations was examined. Pre- and posttest performance was compared following four 25-min intervention sessions. The linear number board game significantly improved children's performance in all posttest measures and facilitated a shift from a logarithmic to a linear representation of numerical magnitude, emphasizing the importance of spatial cues in estimation. Exposure to the number card games involving nonsymbolic magnitude judgments and association of symbolic and nonsymbolic quantities, but without any linear spatial cues, improved some aspects of children's basic number skills but not numerical estimation precision.

  13. Identifying Fractions on Number Lines.

    ERIC Educational Resources Information Center

    Bright, George W.; And Others

    1988-01-01

    This study investigated the ways students represented fractions on number lines and the effects of instruction on those representations. The instruction primarily concerned representing fractions and ordering fractions on number lines. (Author/PK)

  14. The Mental Number Line in Dyscalculia: Impaired Number Sense or Access From Symbolic Numbers?

    PubMed

    Lafay, Anne; St-Pierre, Marie-Catherine; Macoir, Joël

    2016-03-25

    Numbers may be manipulated and represented mentally over a compressible number line oriented from left to right. According to numerous studies, one of the primary reasons for dyscalculia is related to improper understanding of the mental number line. Children with dyscalculia usually show difficulty when they have to place Arabic numbers on a physical number line. However, it remains unclear whether they have a deficit with the mental number line per se or a deficit with accessing it from nonsymbolic and/or symbolic numbers. Quebec French-speaking 8- to 9-year-old children with (24) and without (37) dyscalculia were assessed with transcoding tasks (number-to-positionandposition-to-number) designed to assess the acuity of the mental number line with Arabic and spoken numbers as well as with analogic numerosities. Results showed that children with dyscalculia produced a larger percentage absolute error than children without mathematics difficulties in every task except the number-to-position transcoding task with analogic numerosities. Hence, these results suggested that children with dyscalculia do not have a general deficit of the mental number line but rather a deficit with accessing it from symbolic numbers.

  15. Three Cubes in One Number

    ERIC Educational Resources Information Center

    Jue, Brian

    2010-01-01

    Separate a three-digit number into its component digits. After raising each digit to the third power and computing the sum of the cubes, determine how often the original number reappears. Modular arithmetic is used to reduce the number of potential solutions to a more manageable quantity. (Contains 4 tables.)

  16. Random Numbers and Quantum Computers

    ERIC Educational Resources Information Center

    McCartney, Mark; Glass, David

    2002-01-01

    The topic of random numbers is investigated in such a way as to illustrate links between mathematics, physics and computer science. First, the generation of random numbers by a classical computer using the linear congruential generator and logistic map is considered. It is noted that these procedures yield only pseudo-random numbers since…

  17. A Lesson in Number Pattern

    ERIC Educational Resources Information Center

    Fletcher, Rodney

    2008-01-01

    This article presents a guided investigation into the spacial relationships between the centres of the squares in a Fibonacci tiling. It is essentially a lesson in number pattern, but includes work with surds, coordinate geometry, and some elementary use of complex numbers. The investigation could be presented to students in a number of ways…

  18. Linear or Exponential Number Lines

    ERIC Educational Resources Information Center

    Stafford, Pat

    2011-01-01

    Having decided to spend some time looking at one's understanding of numbers, the author was inspired by "Alex's Adventures in Numberland," by Alex Bellos to look at one's innate appreciation of number. Bellos quotes research studies suggesting that an individual's natural appreciation of numbers is more likely to be exponential rather…

  19. Numbers and Math. Beginnings Workshop.

    ERIC Educational Resources Information Center

    Gross, Fred E.; Elkind, CavidEpstein, Ann S.; Copley, Juanita V.; Haugen, Ginny; Haugen, Kirsten

    2003-01-01

    Presents five articles addressing numbers and math instruction for young children: "Math Talk with Young Children: One Parent's Experience" (Fred E. Gross); "How Children Build Their Understanding of Numbers" (David Elkind); "Early Math: It's More than Numbers" (Ann S. Epstein); "Assessing Mathematical Learning: Observing and Listening to…

  20. What Exactly Do Numbers Mean?

    ERIC Educational Resources Information Center

    Huang, Yi Ting; Spelke, Elizabeth; Snedeker, Jesse

    2013-01-01

    Number words are generally used to refer to the exact cardinal value of a set, but cognitive scientists disagree about their meanings. Although most psychological analyses presuppose that numbers have exact semantics ("two" means exactly two), many linguistic accounts propose that numbers have lower-bounded semantics (at least two), and…

  1. Cognitive representation of negative numbers.

    PubMed

    Fischer, Martin H

    2003-05-01

    To understand negative numbers, must we refer to positive number representations (the phylogenetic hypothesis), or do we acquire a negative mental number line (the ontogenetic hypothesis)? In the experiment reported here, participants made lateralized button responses to indicate the larger of two digits from the range -9 to 9. Digit pairs were displayed spatially congruent or incongruent with either a phylogenetic or an ontogenetic mental number line. The pattern of decision latencies suggests that negative numbers become associated with left space, thus supporting the ontogenetic view.

  2. A Laboratory Experiment on How to Create Dimensionless Correlations

    ERIC Educational Resources Information Center

    Edwards, Robert V.

    2010-01-01

    An experiment is described that illustrates how chemical engineering correlations are created. Balls of different diameters and different specific gravities (all less than one) are dropped from several heights into a pool of water, and the maximum depth reached by the ball is measured. This data is used to estimate the coefficients for a…

  3. Dimensionless form for Goodwin's equation of business cycle

    NASA Astrophysics Data System (ADS)

    Antonova, A. O.; Reznik, S. N.; Todorov, M. D.

    2012-10-01

    We have conducted numerically a comparative analysis of two models of the business cycle proposed by R. Goodwin, Econometrica, 19, 1-17 (1951): in form of the neutral differential equation with fixed delay and in form of the second order nonlinear ordinary differential equation. Both models demonstrate the possibility of oscillations of income (so-called Goodwin's oscillations). We have shown that for these models the excitation conditions for Goodwin's oscillations and the some its properties may be very different.

  4. Generalized Bernoulli-Hurwitz numbers and the universal Bernoulli numbers

    NASA Astrophysics Data System (ADS)

    Ônishi, Yoshihiro

    2011-10-01

    The three fundamental properties of the Bernoulli numbers, namely, the von Staudt-Clausen theorem, von Staudt's second theorem, and Kummer's original congruence, are generalized to new numbers that we call generalized Bernoulli-Hurwitz numbers. These are coefficients in the power series expansion of a higher-genus algebraic function with respect to a suitable variable. Our generalization differs strongly from previous works. Indeed, the order of the power of the modulus prime in our Kummer-type congruences is exactly the same as in the trigonometric function case (namely, Kummer's own congruence for the original Bernoulli numbers), and as in the elliptic function case (namely, H. Lang's extension for the Hurwitz numbers). However, in other past results on higher-genus algebraic functions, the modulus was at most half of its value in these classical cases. This contrast is clarified by investigating the analogue of the three properties above for the universal Bernoulli numbers. Bibliography: 34 titles.

  5. Quantum random number generator using photon-number path entanglement

    NASA Astrophysics Data System (ADS)

    Kwon, Osung; Cho, Young-Wook; Kim, Yoon-Ho

    2010-08-01

    We report an experimental implementation of quantum random number generator based on the photon-number-path entangled state. The photon-number-path entangled state is prepared by means of two-photon Hong-Ou-Mandel quantum interference at a beam splitter. The randomness in our scheme is of truly quantum mechanical origin as it comes from the projection measurement of the entangled two-photon state. The generated bit sequences satisfy the standard randomness test.

  6. Schizophrenia copy number variants and associative learning.

    PubMed

    Clifton, N E; Pocklington, A J; Scholz, B; Rees, E; Walters, J T R; Kirov, G; O'Donovan, M C; Owen, M J; Wilkinson, L S; Thomas, K L; Hall, J

    2017-02-01

    Large-scale genomic studies have made major progress in identifying genetic risk variants for schizophrenia. A key finding from these studies is that there is an increased burden of genomic copy number variants (CNVs) in schizophrenia cases compared with controls. The mechanism through which these CNVs confer risk for the symptoms of schizophrenia, however, remains unclear. One possibility is that schizophrenia risk CNVs impact basic associative learning processes, abnormalities of which have long been associated with the disorder. To investigate whether genes in schizophrenia CNVs impact on specific phases of associative learning we combined human genetics with experimental gene expression studies in animals. In a sample of 11 917 schizophrenia cases and 16 416 controls, we investigated whether CNVs from patients with schizophrenia are enriched for genes expressed during the consolidation, retrieval or extinction of associative memories. We show that CNVs from cases are enriched for genes expressed during fear extinction in the hippocampus, but not genes expressed following consolidation or retrieval. These results suggest that CNVs act to impair inhibitory learning in schizophrenia, potentially contributing to the development of core symptoms of the disorder.

  7. Schizophrenia copy number variants and associative learning

    PubMed Central

    Clifton, N E; Pocklington, A J; Scholz, B; Rees, E; Walters, J T R; Kirov, G; O'Donovan, M C; Owen, M J; Wilkinson, L S; Thomas, K L; Hall, J

    2017-01-01

    Large-scale genomic studies have made major progress in identifying genetic risk variants for schizophrenia. A key finding from these studies is that there is an increased burden of genomic copy number variants (CNVs) in schizophrenia cases compared with controls. The mechanism through which these CNVs confer risk for the symptoms of schizophrenia, however, remains unclear. One possibility is that schizophrenia risk CNVs impact basic associative learning processes, abnormalities of which have long been associated with the disorder. To investigate whether genes in schizophrenia CNVs impact on specific phases of associative learning we combined human genetics with experimental gene expression studies in animals. In a sample of 11 917 schizophrenia cases and 16 416 controls, we investigated whether CNVs from patients with schizophrenia are enriched for genes expressed during the consolidation, retrieval or extinction of associative memories. We show that CNVs from cases are enriched for genes expressed during fear extinction in the hippocampus, but not genes expressed following consolidation or retrieval. These results suggest that CNVs act to impair inhibitory learning in schizophrenia, potentially contributing to the development of core symptoms of the disorder. PMID:27956746

  8. Catalan Numbers, the Hankel Transform, and Fibonacci Numbers

    NASA Astrophysics Data System (ADS)

    Cvetkovic, Aleksandar; Rajkovic, Predrag; Ivkovic, Milos

    2002-05-01

    We prove that the Hankel transformation of a sequence whose elements are the sums of two adjacent Catalan numbers is a subsequence of the Fibonacci numbers. This is done by finding the explicit form for the coefficients in the three-term recurrence relation that the corresponding orthogonal polynomials satisfy.

  9. On Fibonacci Numbers Which Are Elliptic Korselt Numbers

    DTIC Science & Technology

    2014-11-17

    On Fibonacci numbers which are elliptic Korselt numbers Florian Luca School of Mathematics University of the Witwatersrand P. O. Box Wits 2050, South... Witwatersrand . This author thanks this institution for hospitality. 6 References [1] W. R. Alford, A. Granville and C. Pomerance, “There are infinitely

  10. What exactly do numbers mean?

    PubMed Central

    Huang, Yi Ting; Spelke, Elizabeth; Snedeker, Jesse

    2014-01-01

    Number words are generally used to refer to the exact cardinal value of a set, but cognitive scientists disagree about their meanings. Although most psychological analyses presuppose that numbers have exact semantics (two means EXACTLY TWO), many linguistic accounts propose that numbers have lower-bounded semantics (AT LEAST TWO), and that speakers restrict their reference through a pragmatic inference (scalar implicature). We address this debate through studies of children who are in the process of acquiring the meanings of numbers. Adults and 2- and 3-year-olds were tested in a novel paradigm that teases apart semantic and pragmatic aspects of interpretation (the covered box task). Our findings establish that when scalar implicatures are cancelled in the critical trials of this task, both adults and children consistently give exact interpretations for number words. These results, in concert with recent work on real-time processing, provide the first unambiguous evidence that number words have exact semantics. PMID:25285053

  11. Dynamic Virtual Credit Card Numbers

    NASA Astrophysics Data System (ADS)

    Molloy, Ian; Li, Jiangtao; Li, Ninghui

    Theft of stored credit card information is an increasing threat to e-commerce. We propose a dynamic virtual credit card number scheme that reduces the damage caused by stolen credit card numbers. A user can use an existing credit card account to generate multiple virtual credit card numbers that are either usable for a single transaction or are tied with a particular merchant. We call the scheme dynamic because the virtual credit card numbers can be generated without online contact with the credit card issuers. These numbers can be processed without changing any of the infrastructure currently in place; the only changes will be at the end points, namely, the card users and the card issuers. We analyze the security requirements for dynamic virtual credit card numbers, discuss the design space, propose a scheme using HMAC, and prove its security under the assumption the underlying function is a PRF.

  12. Refactorable Numbers - A Machine Invention

    NASA Astrophysics Data System (ADS)

    Colton, Simon

    1999-02-01

    The HR (or Hardy-Ramanujan) program invents and analyses definitions in areas of pure mathematics, including finite algebras, graph theory and number theory. While working in number theory, HR recently invented a new integer sequence, the refactorable numbers, which are defined and developed here. A discussion of how HR works, along with details of well known sequences reinvented by HR and other new sequences invented by HR is also given.

  13. Compendium of Experimental Cetane Numbers

    SciTech Connect

    Yanowitz, J.; Ratcliff, M. A.; McCormick, R. L.; Taylor, J. D.; Murphy, M. J.

    2014-08-01

    This report is an updated version of the 2004 Compendium of Experimental Cetane Number Data and presents a compilation of measured cetane numbers for pure chemical compounds. It includes all available single compound cetane number data found in the scientific literature up until March 2014 as well as a number of unpublished values, most measured over the past decade at the National Renewable Energy Laboratory. This Compendium contains cetane values for 389 pure compounds, including 189 hydrocarbons and 201 oxygenates. More than 250 individual measurements are new to this version of the Compendium. For many compounds, numerous measurements are included, often collected by different researchers using different methods. Cetane number is a relative ranking of a fuel's autoignition characteristics for use in compression ignition engines; it is based on the amount of time between fuel injection and ignition, also known as ignition delay. The cetane number is typically measured either in a single-cylinder engine or a constant volume combustion chamber. Values in the previous Compendium derived from octane numbers have been removed, and replaced with a brief analysis of the correlation between cetane numbers and octane numbers. The discussion on the accuracy and precision of the most commonly used methods for measuring cetane has been expanded and the data has been annotated extensively to provide additional information that will help the reader judge the relative reliability of individual results.

  14. BKP and projective Hurwitz numbers

    NASA Astrophysics Data System (ADS)

    Natanzon, Sergey M.; Orlov, Aleksandr Yu.

    2017-02-01

    We consider d-fold branched coverings of the projective plane RP^2 and show that the hypergeometric tau function of the BKP hierarchy of Kac and van de Leur is the generating function for weighted sums of the related Hurwitz numbers. In particular, we get the RP^2 analogues of the CP^1 generating functions proposed by Okounkov and by Goulden and Jackson. Other examples are Hurwitz numbers weighted by the Hall-Littlewood and by the Macdonald polynomials. We also consider integrals of tau functions which generate Hurwitz numbers related to base surfaces with arbitrary Euler characteristics e, in particular projective Hurwitz numbers e=1.

  15. Brain representations of negative numbers.

    PubMed

    Parnes, Michael; Berger, Andrea; Tzelgov, Joseph

    2012-12-01

    Participants performed a physical comparison task of pairs of positive and pairs of negative one-digit numbers while their electrophysiological brain activity was measured. The numerical value of the presented digits was either congruent or incongruent with the physical size of the digits. Analysis has shown that the earliest event-related potential (ERP) difference between positive and negative numbers was found in the P300 ERP component peak, where there was an inverse effect of congruity in the negative pairs, compared with the positive ones. This pattern of results supports the idea that natural numbers serve as primitives of the human cognitive system, whereas negative numbers are apparently generated if needed.

  16. On the drag of model dendrite fragments at low Reynolds number

    NASA Technical Reports Server (NTRS)

    Zakhem, R.; Weidman, P. D.; De Groh, H. C., III

    1992-01-01

    An experimental study of low Reynolds number drag on laboratory models of dendrite fragments has been conducted. The terminal velocities of the dendrites undergoing free fall along their axis of symmetry were measured in a large Stokes flow facility. Corrections for wall interference give nearly linear drag vs Reynolds number curves. Corrections for both wall interference and inertia effects show that the dendrite Stokes settling velocities are always less than that of a sphere of equal mass and volume. In the Stokes limit, the settling speed ratio is found to correlate well with the primary dendrite arm aspect ratio and a second dimensionless shape parameter which serves as a measure of the fractal-like nature of the dendrite models. These results can be used to estimate equiaxed grain velocities and distance of travel in metal castings. The drag measurements may be used in numerical codes to calculate the movement of grains in a convecting melt in an effort to determine macrosegregation patterns caused by the sink/float mechanism.

  17. On the drag of model dendrite fragments at low Reynolds number

    NASA Technical Reports Server (NTRS)

    Zakhem, R.; Weidman, P. D.; Degroh, H. C., III

    1993-01-01

    An experimental study of low Reynolds number drag on laboratory models of dendrite fragments has been conducted. The terminal velocities of the dendrites undergoing free fall along their axis of symmetry were measured in a large Stokes flow facility. Corrections for wall interference give nearly linear drag vs Reynolds number curves. Corrections for both wall interference and inertia effects show that the dendrite Stokes settling velocities are always less than that of a sphere of equal mass and volume. In the Stokes limit, the settling speed ratio is found to correlate well with primary dendrite arm aspect ratio and a second dimensionless shape paremeter which serves as a measure of the fractal-like nature of the dendrite models. These results can be used to estimate equiaxed grain velocities and distance of travel in metal castings. The drag measurements may be used in numerical codes to calculate the movement of grains in a convecting melt in an effort to determine macrosegregation patterns caused by the sink/float mechanism.

  18. Measuring Distance of Fuzzy Numbers by Trapezoidal Fuzzy Numbers

    NASA Astrophysics Data System (ADS)

    Hajjari, Tayebeh

    2010-11-01

    Fuzzy numbers and more generally linguistic values are approximate assessments, given by experts and accepted by decision-makers when obtaining value that is more accurate is impossible or unnecessary. Distance between two fuzzy numbers plays an important role in linguistic decision-making. It is reasonable to define a fuzzy distance between fuzzy objects. To achieve this aim, the researcher presents a new distance measure for fuzzy numbers by means of improved centroid distance method. The metric properties are also studied. The advantage is the calculation of the proposed method is far simple than previous approaches.

  19. Building Buildings with Triangular Numbers

    ERIC Educational Resources Information Center

    Pagni, David L.

    2006-01-01

    Triangular numbers are used to unravel a new sequence of natural numbers here-to-fore not appearing on the Encyclopedia of Integer Sequences website. Insight is provided on the construction of the sequence using "buildings" as a viewable model of the sequence entries. A step-by-step analysis of the sequence pattern reveals a method for generating…

  20. The Search for Prime Numbers.

    ERIC Educational Resources Information Center

    Pomerance, Carl

    1982-01-01

    Until recently the testing of a 100-digit number to determine whether it is prime or composite could have taken a century. However, in the past two years a method has been developed enabling a computer to determine the primality of an arbitrary number in about 40 seconds of running time. (Author/JN)

  1. Regular Numbers and Mathematical Worlds

    ERIC Educational Resources Information Center

    Whitacre, Ian; Bouhjar, Khalid; Bishop, Jessica Pierson; Philipp, Randolph; Schappelle, Bonnie P.

    2016-01-01

    Rather than describing the challenges of integer learning in terms of a transition from positive to negative numbers, we have arrived at a different perspective: We view students as inhabiting distinct mathematical worlds consisting of particular types of numbers (as construed by the students). These worlds distinguish and illuminate students'…

  2. Identifying Fractions on Number Lines.

    ERIC Educational Resources Information Center

    Behr, Merlyn J.; Bright, George W.

    A two-year study was conducted with fourth-grade children in the context of extensive teaching experiments concerned with the learning of rational number concepts. Representational difficulties in using the number line model were investigated. While instruction in the second year attempted to resolve observed learning difficulties, the results of…

  3. Counting copy number and calories.

    PubMed

    White, Stefan

    2015-08-01

    Copy number variation (CNV) at several genomic loci has been associated with different human traits and diseases, but in many cases the findings could not be replicated. A new study provides insights into the degree of variation present at the amylase locus and calls into question a previous association between amylase copy number and body mass index.

  4. Number Talks Build Numerical Reasoning

    ERIC Educational Resources Information Center

    Parrish, Sherry D.

    2011-01-01

    "Classroom number talks," five- to fifteen-minute conversations around purposefully crafted computation problems, are a productive tool that can be incorporated into classroom instruction to combine the essential processes and habits of mind of doing math. During number talks, students are asked to communicate their thinking when presenting and…

  5. Investigating the Randomness of Numbers

    ERIC Educational Resources Information Center

    Pendleton, Kenn L.

    2009-01-01

    The use of random numbers is pervasive in today's world. Random numbers have practical applications in such far-flung arenas as computer simulations, cryptography, gambling, the legal system, statistical sampling, and even the war on terrorism. Evaluating the randomness of extremely large samples is a complex, intricate process. However, the…

  6. Toddlers' Spontaneous Attention to Number

    ERIC Educational Resources Information Center

    Baroody, Arthur J.; Li, Xia; Lai, Meng-lung

    2008-01-01

    Hannula and Lehtinen (2001, 2005) defined spontaneous focusing on numerosity (SFON) as the tendency to notice the relatively abstract attribute of number despite the presence of other attributes. According to nativists, an innate concept of one to three directs young children's attention to these "intuitive numbers" in everyday situations--even…

  7. Spontaneous Number Representation in Mosquitofish

    ERIC Educational Resources Information Center

    Dadda, Marco; Piffer, Laura; Agrillo, Christian; Bisazza, Angelo

    2009-01-01

    While there is convincing evidence that preverbal human infants and non-human primates can spontaneously represent number, considerable debate surrounds the possibility that such capacity is also present in other animals. Fish show a remarkable ability to discriminate between different numbers of social companions. Previous work has demonstrated…

  8. The Algebra of Complex Numbers.

    ERIC Educational Resources Information Center

    LePage, Wilbur R.

    This programed text is an introduction to the algebra of complex numbers for engineering students, particularly because of its relevance to important problems of applications in electrical engineering. It is designed for a person who is well experienced with the algebra of real numbers and calculus, but who has no experience with complex number…

  9. Some Ideas About Number Theory.

    ERIC Educational Resources Information Center

    Barnett, I. A.

    The material in this booklet is designed for non-professional mathematicians who have an interest in the theory of numbers. The author presents some elementary results of number theory without involving detailed proofs. Much of the material has direct application for secondary school mathematics teachers. A brief account of the nature of number…

  10. Old and New Magic Numbers

    SciTech Connect

    Talmi, Igal

    2008-11-11

    The discovery of magic numbers led to the shell model. They indicated closure of major shells and are robust: proton magic numbers are rather independent of the occupation of neutron orbits and vice versa. Recently the magic property became less stringent and we hear a lot about the discovery of new magic numbers. These, however, indicate sub-shell closures and strongly depend on occupation numbers and hence, may be called quasi-magic numbers. Some of these have been known for many years and the mechanism for their appearance as well as disappearance, was well understood within the simple shell model. The situation will be illustrated by a few examples which demonstrate the simple features of the shell model. Will this simplicity emerge from the complex computations of nuclear many-body theory?.

  11. SOME CHROMOSOME NUMBERS OF DRAPARNALDIA.

    PubMed

    Carroll, J W; Deason, T R

    1969-03-01

    The variability exhibited by Draparnaldia both in nature and in the laboratory makes it difficult to identify the species. The natural variability of Draparnaldia was amplified by the environmental conditions and the media used in this study. With the hope that chromosome studies would aid in taxonomic characterization by providing additional differentiating criteria, special attention was devoted to adapting techniques which could be used to determine chromosome numbers of Draparnaldia isolates. The chromosome numbers reported herein are as follows: (1) Draparnaldia glomerata, Isolate #1, isolated from Davis Falls, Montevallo, Alabama, was found to have a chromosome number of 13. (2) Draparnaldia Isolate #2, an unidentified species obtained from Anniston, Alabama, was found to have a chromosome number of 13. (3) Draparnaldia acuta, Isolate #3 from Northwood Lake, Northport, Alabama, exhibited 26 chromosomes. (4) Draparnaldia plumosa strain 423 (Indiana Culture Collection), 418/a (Cambridge) was observed to have a chromosome number of 13.

  12. Reynolds number influences in aeronautics

    NASA Technical Reports Server (NTRS)

    Bushnell, Dennis M.; Yip, Long P.; Yao, Chung-Sheng; Lin, John C.; Lawing, Pierce L.; Batina, John T.; Hardin, Jay C.; Horvath, Thomas J.; Fenbert, James W.; Domack, Christopher S.

    1993-01-01

    Reynolds number, a measure of the ratio of inertia to viscous forces, is a fundamental similarity parameter for fluid flows and therefore, would be expected to have a major influence in aerodynamics and aeronautics. Reynolds number influences are generally large, but monatomic, for attached laminar (continuum) flow; however, laminar flows are easily separated, inducing even stronger, non-monatomic, Reynolds number sensitivities. Probably the strongest Reynolds number influences occur in connection with transitional flow behavior. Transition can take place over a tremendous Reynolds number range, from the order of 20 x 10(exp 3) for 2-D free shear layers up to the order of 100 x 10(exp 6) for hypersonic boundary layers. This variability in transition behavior is especially important for complex configurations where various vehicle and flow field elements can undergo transition at various Reynolds numbers, causing often surprising changes in aerodynamics characteristics over wide ranges in Reynolds number. This is further compounded by the vast parameterization associated with transition, in that any parameter which influences mean viscous flow development (e.g., pressure gradient, flow curvature, wall temperature, Mach number, sweep, roughness, flow chemistry, shock interactions, etc.), and incident disturbance fields (acoustics, vorticity, particulates, temperature spottiness, even electro static discharges) can alter transition locations to first order. The usual method of dealing with the transition problem is to trip the flow in the generally lower Reynolds number wind tunnel to simulate the flight turbulent behavior. However, this is not wholly satisfactory as it results in incorrectly scaled viscous region thicknesses and cannot be utilized at all for applications such as turbine blades and helicopter rotors, nacelles, leading edge and nose regions, and High Altitude Long Endurance and hypersonic airbreathers where the transitional flow is an innately critical

  13. Who's Expressing in "Expressive Writing"?

    ERIC Educational Resources Information Center

    Reed, Janine

    In an attempt to understand what expressive writing means to themselves and to their students, teachers should explore and reflect on various questions regarding expressive writing theories and practices. For many, self-expression is the basis of all serious writing and an important stage in any act of learning, so it is essential to uncover the…

  14. Poison control center - emergency number

    MedlinePlus

    For a POISON EMERGENCY call: 1-800-222-1222 ANYWHERE IN THE UNITED STATES This national hotline number will let you ... is a free and confidential service. All local poison control centers in the United States use this ...

  15. Atomic Structure - A Numbers Game

    ERIC Educational Resources Information Center

    George, W. O.; Vincent, A.

    1975-01-01

    Emphasizes the simplicity and elegance of early discoveries related to the hydrogen spectrum and provides an elementary experimental basis of quantum theory based on a "numbers game" which can be played by students. (Author/GS)

  16. Integral Presentations of Catalan Numbers

    ERIC Educational Resources Information Center

    Dana-Picard, Thierry

    2010-01-01

    We compute in three different ways the same definite parametric integral. By-products are the derivation of a combinatorial identity and two integral presentations of Catalan numbers. One of them leads to a presentation using the [gamma] function.

  17. Avogadro's Number and Avogadro's Constant

    ERIC Educational Resources Information Center

    Davies, R. O.

    1973-01-01

    Discusses three possible methods of thinking about the implications of the definitions of the Avogadro constant and number. Indicates that there is only one way to arrive at a simple and standard conclusion. (CC)

  18. Fibonacci Numbers and the Spreadsheet.

    ERIC Educational Resources Information Center

    Verderber, Nadine L.

    1991-01-01

    Described is a classroom activity incorporating a computer spreadsheet to study number patterns generated by the Fibonacci sequence. Included are examples and suggestions for the use of the spreadsheet in other recursive relationships. (JJK)

  19. Graspable Objects Shape Number Processing

    PubMed Central

    Ranzini, Mariagrazia; Lugli, Luisa; Anelli, Filomena; Carbone, Rossella; Nicoletti, Roberto; Borghi, Anna M.

    2011-01-01

    The field of numerical cognition represents an interesting case for action-based theories of cognition, since number is a special kind of abstract concept. Several studies have shown that within the parietal lobes adjacent neural regions code numerical magnitude and grasping-related information. This anatomical proximity between brain areas involved in number and sensorimotor processes may account for interactions between numerical magnitude and action. In particular, recent studies have demonstrated a causal role of action perception on numerical magnitude processing. If objects are represented in terms of actions (affordances), the causal role of action on number processing should extend to the case of objects affordances. This study investigates the relationship between numbers and objects affordances in two experiments, without (Experiment 1) or with (Experiment 2) the requirement of an action (i.e., participants were asked to hold an object in their hands during the task). The task consisted in repeating aloud the odd or even digit within a pair depending on the type of the preceding or following object. Order of presentation (object–number vs. number–object), Object type (graspable vs. ungraspable), Object size (small vs. large), and Numerical magnitude (small vs. large) were manipulated for each experiment. Experiment 1 showed a facilitation – in terms of quicker responses – for graspable over ungraspable objects preceded by numbers, and an effect of numerical magnitude after the presentation of graspable objects. Experiment 2 demonstrated that the action execution enhanced overall the sensitivity to numerical magnitude, and that at the same time it interfered with the effects of objects affordances on number processing. Overall, these findings demonstrate that numbers and graspable objects are strongly interrelated, supporting the view that abstract concepts may be grounded in the motor experience. PMID:22164141

  20. Entropy estimation and Fibonacci numbers

    NASA Astrophysics Data System (ADS)

    Timofeev, Evgeniy A.; Kaltchenko, Alexei

    2013-05-01

    We introduce a new metric on a space of right-sided infinite sequences drawn from a finite alphabet. Emerging from a problem of entropy estimation of a discrete stationary ergodic process, the metric is important on its own part and exhibits some interesting properties. Notably, the number of distinct metric values for a set of sequences of length m is equal to Fm+3 - 1, where Fm is a Fibonacci number.

  1. Random numbers from vacuum fluctuations

    NASA Astrophysics Data System (ADS)

    Shi, Yicheng; Chng, Brenda; Kurtsiefer, Christian

    2016-07-01

    We implement a quantum random number generator based on a balanced homodyne measurement of vacuum fluctuations of the electromagnetic field. The digitized signal is directly processed with a fast randomness extraction scheme based on a linear feedback shift register. The random bit stream is continuously read in a computer at a rate of about 480 Mbit/s and passes an extended test suite for random numbers.

  2. Number matters: control of mammalian mitochondrial DNA copy number.

    PubMed

    Clay Montier, Laura L; Deng, Janice J; Bai, Yidong

    2009-03-01

    Regulation of mitochondrial biogenesis is essential for proper cellular functioning. Mitochondrial DNA (mtDNA) depletion and the resulting mitochondrial malfunction have been implicated in cancer, neurodegeneration, diabetes, aging, and many other human diseases. Although it is known that the dynamics of the mammalian mitochondrial genome are not linked with that of the nuclear genome, very little is known about the mechanism of mtDNA propagation. Nevertheless, our understanding of the mode of mtDNA replication has advanced in recent years, though not without some controversies. This review summarizes our current knowledge of mtDNA copy number control in mammalian cells, while focusing on both mtDNA replication and turnover. Although mtDNA copy number is seemingly in excess, we reason that mtDNA copy number control is an important aspect of mitochondrial genetics and biogenesis and is essential for normal cellular function.

  3. CRC (Coordinating Research Council) octane number requirement survey, 1986

    SciTech Connect

    Not Available

    1987-08-01

    In the fortieth annual statistical survey of current model vehicles conducted by the Coordinating Research Council, Inc., test data were obtained on 377 1986 model vehicles, including 314 US vehicles and 63 imported vehicles. Sixteen laboratories participated in this survey. Maximum octane number requirements were determined by testing at maximum-throttle conditions, as well as a part-throttle. Requirements are expressed as the (R+M)/2 octane number, Research octane number, and motor octane number of the reference fuel producing knock which was recurrent and repeatable at the lowest audible level. The primary analyses used in this report are based upon (R+M)/2 octane number requirements, rather than upon Research octane number requirements as in the survey reports prior to 1985. Estimated octane-number requirements for the US vehicles are weighted in proportion to the 1986 vehicle model production figures and, for the imported models, in proportion to import sales volume in the United States.

  4. 1987 CRC (Coordinating Research Council) octane number requirement survey

    SciTech Connect

    Not Available

    1988-08-01

    In the forty-first annual statistical survey of current model vehicles conducted by the Coordinating Research Council, Inc., test data were obtained on 389 1987 model vehicles, including 300 passenger cars and 89 light-duty trucks and vans. Eighteen laboratories participated in this Survey. Maximum octane number requirements were determined by testing at maximum-throttle conditions, as well as at part-throttle. Requirements are expressed as the (R+M)/2 octane number, Research octane number, and Motor octane number of the reference-fuel producing knock which was recurrent and repeatable at the lowest audible level. The primary analyses used in this report are based upon (R+M)/2 octane number requirements, rather than upon Research octane number requirements as in Survey reports prior to 1985. Estimated octane number requirements for the total vehicles are weighted in proportion to the 1987 vehicle model production and/or sales figures.

  5. Symbiotic Expressions

    NASA Astrophysics Data System (ADS)

    Bernecky, Robert; Herhut, Stephan; Scholz, Sven-Bodo

    We introduce symbiotic expressions, a method for algebraic simplification within a compiler, in lieu of an SMT solver, such as Yices or the Omega Calculator. Symbiotic expressions are compiler-generated expressions, temporarily injected into a program's abstract syntax tree (AST). The compiler's normal optimizations interpret and simplify those expressions, making their results available for the compiler to use as a basis for decisions about further optimization of the source program. The expressions are symbiotic, in the sense that both parties benefit: an optimization benefits, by using the compiler itself to simplify expressions that have been attached, lamprey-like, to the AST by the optimization; the program being compiled benefits, from improved run-time in both serial and parallel environments.

  6. Number Meaning and Number Grammar in English and Spanish

    ERIC Educational Resources Information Center

    Bock, Kathryn; Carreiras, Manuel; Meseguer, Enrique

    2012-01-01

    Grammatical agreement makes different demands on speakers of different languages. Being widespread in the languages of the world, the features of agreement systems offer valuable tests of how language affects deep-seated domains of human cognition and categorization. Number agreement is one such domain, with intriguing evidence that typological…

  7. The MIXMAX random number generator

    NASA Astrophysics Data System (ADS)

    Savvidy, Konstantin G.

    2015-11-01

    In this paper, we study the randomness properties of unimodular matrix random number generators. Under well-known conditions, these discrete-time dynamical systems have the highly desirable K-mixing properties which guarantee high quality random numbers. It is found that some widely used random number generators have poor Kolmogorov entropy and consequently fail in empirical tests of randomness. These tests show that the lowest acceptable value of the Kolmogorov entropy is around 50. Next, we provide a solution to the problem of determining the maximal period of unimodular matrix generators of pseudo-random numbers. We formulate the necessary and sufficient condition to attain the maximum period and present a family of specific generators in the MIXMAX family with superior performance and excellent statistical properties. Finally, we construct three efficient algorithms for operations with the MIXMAX matrix which is a multi-dimensional generalization of the famous cat-map. First, allowing to compute the multiplication by the MIXMAX matrix with O(N) operations. Second, to recursively compute its characteristic polynomial with O(N2) operations, and third, to apply skips of large number of steps S to the sequence in O(N2 log(S)) operations.

  8. Frequency-dependence of the Love Numbers due to the Earth's Quasi-Rheology, Mantle Anelasticity and Ocean Tides

    NASA Astrophysics Data System (ADS)

    Chen, W.; Shen, W.; Huang, C.

    2012-12-01

    Love numbers are defined as dimensionless coefficients to characterize the deformations caused by an applied volume potential. For the complex Earth system, Love numbers are not constants but vary with frequency due to the following three factors: 1. the resonance behavior of the wobble motions near its eigen-frequencies, such as the well-known free core nutation resonance in the diurnal tides; 2. the mantle anelasticity of which the role becomes more significant as the frequency gets lower; and 3. the quasi-fluid rheology describing the Earth's fluid-like deformations at geological time scales. In this study, we present a power law for mantle anelasticity constrained by Chandler wobble parameters (the period TC and the quality factor QC) and an empirical quasi-fluid rheology model with a linear dependence on frequency for a period as long as 18.6 years. The models of mantle anelasticity and quasi-fluid rheology can provide good estimates of oceanless Love numbers at arbitrary frequencies with periods ranging from ~1 day to ~18.6 years, when comparing to the observed values for some frequencies. To account for the effects of dynamic oceans on the Love numbers, the diurnal ocean tides from the IERS Conventions (2010), the long-period ocean model of Dickman & Gross (2010) and the equilibrium ocean pole tide model of Desai (2002) are adopted to calculate the oceanic corrections to the Love numbers. We find due to the mantle anelasticity, the equilibrium ocean pole tides will cause imaginary parts to the Love numbers and have notable influence on the geophysical estimate of the QC value, which was disregarded before. In addition, we show that the Chandler wobble parameters derived from our Love number model are consistent with the observations. Thus, we conclude that our model of frequency-dependent Love numbers should be reliable. This study is supported partly by the National Natural Science Foundation China (Grant Numbers 41174011, 41128003, 41021061 and 40974015).

  9. Negative Numbers and Antimatter Particles

    NASA Astrophysics Data System (ADS)

    Tsan, Ung Chan

    Dirac's equation states that an electron implies the existence of an antielectron with the same mass (more generally same arithmetic properties) and opposite charge (more generally opposite algebraic properties). Subsequent observation of antielectron validated this concept. This statement can be extended to all matter particles; observation of antiproton, antineutron, antideuton … is in complete agreement with this view. Recently antihypertriton was observed and 38 atoms of antihydrogen were trapped. This opens the path for use in precise testing of nature's fundamental symmetries. The symmetric properties of a matter particle and its mirror antimatter particle seem to be well established. Interactions operate on matter particles and antimatter particles as well. Conservation of matter parallels addition operating on positive and negative numbers. Without antimatter particles, interactions of the Standard Model (electromagnetism, strong interaction and weak interaction) cannot have the structure of group. Antimatter particles are characterized by negative baryonic number A or/and negative leptonic number L. Materialization and annihilation obey conservation of A and L (associated to all known interactions), explaining why from pure energy (A = 0, L = 0) one can only obtain a pair of matter particle antimatter particle — electron antielectron, proton and antiproton — via materialization where the mass of a pair of particle antiparticle gives back to pure energy with annihilation. These two mechanisms cannot change the difference in the number of matter particles and antimatter particles. Thus from pure energy only a perfectly symmetric (in number) universe could be generated as proposed by Dirac but observation showed that our universe is not symmetric, it is a matter universe which is nevertheless neutral. Fall of reflection symmetries shattered the prejudice that there is no way to define in an absolute way right and left or matter and antimatter

  10. On the three primordial numbers

    SciTech Connect

    Gobbetti, Roberto; Pajer, Enrico; Roest, Diederik E-mail: enrico.pajer@gmail.com

    2015-09-01

    Cosmological observations have provided us with the measurement of just three numbers that characterize the very early universe:  1−n{sub s} , N and ln Δ{sub R}{sup 2}. Although each of the three numbers individually carries limited information about the physics of inflation, one may hope to extract non-trivial information from relations among them. Invoking minimality, namely the absence of ad hoc large numbers, we find two viable and mutually exclusive inflationary scenarios. The first is the well-known inverse relation between 1− n{sub s}  and N. The second implies a new relation between  1−n{sub s}  and ln  Δ{sub R}{sup 2}, which might provide us with a handle on the beginning of inflation and predicts the intriguing lower bound on the tensor-to-scalar ratio r > 0.006 (95% CL)

  11. Negative numbers in simple arithmetic.

    PubMed

    Das, Runa; LeFevre, Jo-Anne; Penner-Wilger, Marcie

    2010-10-01

    Are negative numbers processed differently from positive numbers in arithmetic problems? In two experiments, adults (N = 66) solved standard addition and subtraction problems such as 3 + 4 and 7 - 4 and recasted versions that included explicit negative signs-that is, 3 - (-4), 7 + (-4), and (-4) + 7. Solution times on the recasted problems were slower than those on standard problems, but the effect was much larger for addition than subtraction. The negative sign may prime subtraction in both kinds of recasted problem. Problem size effects were the same or smaller in recasted than in standard problems, suggesting that the recasted formats did not interfere with mental calculation. These results suggest that the underlying conceptual structure of the problem (i.e., addition vs. subtraction) is more important for solution processes than the presence of negative numbers.

  12. Experimental Determination of Ramsey Numbers

    NASA Astrophysics Data System (ADS)

    Bian, Zhengbing; Chudak, Fabian; Macready, William G.; Clark, Lane; Gaitan, Frank

    2013-09-01

    Ramsey theory is a highly active research area in mathematics that studies the emergence of order in large disordered structures. Ramsey numbers mark the threshold at which order first appears and are extremely difficult to calculate due to their explosive rate of growth. Recently, an algorithm that can be implemented using adiabatic quantum evolution has been proposed that calculates the two-color Ramsey numbers R(m,n). Here we present results of an experimental implementation of this algorithm and show that it correctly determines the Ramsey numbers R(3,3) and R(m,2) for 4≤m≤8. The R(8,2) computation used 84 qubits of which 28 were computational qubits. This computation is the largest experimental implementation of a scientifically meaningful adiabatic evolution algorithm that has been done to date.

  13. Experimental determination of Ramsey numbers.

    PubMed

    Bian, Zhengbing; Chudak, Fabian; Macready, William G; Clark, Lane; Gaitan, Frank

    2013-09-27

    Ramsey theory is a highly active research area in mathematics that studies the emergence of order in large disordered structures. Ramsey numbers mark the threshold at which order first appears and are extremely difficult to calculate due to their explosive rate of growth. Recently, an algorithm that can be implemented using adiabatic quantum evolution has been proposed that calculates the two-color Ramsey numbers R(m,n). Here we present results of an experimental implementation of this algorithm and show that it correctly determines the Ramsey numbers R(3,3) and R(m,2) for 4≤m≤8. The R(8,2) computation used 84 qubits of which 28 were computational qubits. This computation is the largest experimental implementation of a scientifically meaningful adiabatic evolution algorithm that has been done to date.

  14. Newborn infants perceive abstract numbers.

    PubMed

    Izard, Véronique; Sann, Coralie; Spelke, Elizabeth S; Streri, Arlette

    2009-06-23

    Although infants and animals respond to the approximate number of elements in visual, auditory, and tactile arrays, only human children and adults have been shown to possess abstract numerical representations that apply to entities of all kinds (e.g., 7 samurai, seas, or sins). Do abstract numerical concepts depend on language or culture, or do they form a part of humans' innate, core knowledge? Here we show that newborn infants spontaneously associate stationary, visual-spatial arrays of 4-18 objects with auditory sequences of events on the basis of number. Their performance provides evidence for abstract numerical representations at the start of postnatal experience.

  15. Biotechnology at low Reynolds numbers.

    PubMed Central

    Brody, J P; Yager, P; Goldstein, R E; Austin, R H

    1996-01-01

    The shrinking of liquid handling systems to the micron and submicron size range entails moving into the area of small Reynolds numbers. The fluid dynamics in this regime are very different from the macroscale. We present an intuitive explanation of how the different physics of small Reynolds numbers flow, along with microscopic sizes, can influence device design, and give examples from our own work using fluid flow in microfabricated devices designed for biological processing. Images FIGURE 1 FIGURE 9 FIGURE 10 FIGURE 11 FIGURE 12 FIGURE 13 PMID:8968612

  16. Stagnation Region Heat Transfer: The Influence of Turbulence Parameters, Reynolds Number and Body Shape

    NASA Technical Reports Server (NTRS)

    Vanfossen, G. James; Simoneau, Robert J.

    1994-01-01

    The effect of velocity gradient on stagnation region heat transfer augmentation by free stream turbulence was investigated. Heat transfer was measured in the stagnation region of four models with elliptical leading edges with ratios of major to minor axes of 1:1, 1.5:1, 2.25:1, and 3:1. Four geometrically similar, square bar, square mesh, biplane grids were used to generate free stream turbulence with different intensities and length. Heat transfer measurements were made for the following ranges of parameters: Reynolds number, based on leading edge diameter, 37,000 to 228,000; dimensionless leading edge velocity gradient, 1.20 to 1.80; turbulence intensity, 1.1 to 15.9%; and length scale to leading edge diameter ratio, 0.05 to 0.30. Stagnation point heat transfer augmentation by free stream turbulence can be predicted using a modified version of a previously developed correlation for a circular leading edge. Heat transfer augmentation was independent of body shape at the stagnation point. The heat transfer distribution down-stream from the stagnation point can be predicted using the normalized laminar heat transfer distribution.

  17. Modelling low-Reynolds-number effects in the turbulent air flow over water waves

    NASA Astrophysics Data System (ADS)

    Meirink, Jan F.; Makin, Vladimir K.

    2000-07-01

    In studies of the turbulent air flow over water waves it is usually assumed that the effect of viscosity near the water surface is negligible, i.e. the Reynolds number, Re = u[low asterisk][lambda]/v, is considered to be high. However, for short waves or low wind speeds this assumption is not valid. Therefore, a second-order turbulence closure that takes into account viscous effects is used to simulate the air flow. The model shows reasonable agreement with laboratory measurements of wave-induced velocity profiles. Next, the dependence of the dimensionless energy flux from wind to waves, or growth rate, on Re is investigated. The growth rate of waves that are slow compared to the wind is found to increase strongly when Re decreases below 104, with a maximum around Re = 800. The numerical model predictions are in good agreement with analytical theories and laboratory observations. Results of the study are useful in field conditions for the short waves in the spectrum, which are particularly important for remote sensing applications.

  18. Nanofluid slip flow over a stretching cylinder with Schmidt and Péclet number effects

    NASA Astrophysics Data System (ADS)

    Md Basir, Md Faisal; Uddin, M. J.; Md. Ismail, A. I.; Bég, O. Anwar

    2016-05-01

    A mathematical model is presented for three-dimensional unsteady boundary layer slip flow of Newtonian nanofluids containing gyrotactic microorganisms over a stretching cylinder. Both hydrodynamic and thermal slips are included. By applying suitable similarity transformations, the governing equations are transformed into a set of nonlinear ordinary differential equations with appropriate boundary conditions. The transformed nonlinear ordinary differential boundary value problem is then solved using the Runge-Kutta-Fehlberg fourth-fifth order numerical method in Maple 18 symbolic software. The effects of the controlling parameters on the dimensionless velocity, temperature, nanoparticle volume fractions and microorganism motile density functions have been illustrated graphically. Comparisons of the present paper with the existing published results indicate good agreement and supports the validity and the accuracy of our numerical computations. Increasing bioconvection Schmidt number is observed to depress motile micro-organism density function. Increasing thermal slip parameter leads to a decrease in temperature. Thermal slip also exerts a strong influence on nano-particle concentration. The flow is accelerated with positive unsteadiness parameter (accelerating cylinder) and temperature and micro-organism density function are also increased. However nano-particle concentration is reduced with positive unsteadiness parameter. Increasing hydrodynamic slip is observed to boost temperatures and micro-organism density whereas it decelerates the flow and reduces nano-particle concentrations. The study is relevant to nano-biopolymer manufacturing processes.

  19. Lake Number, a quantitative indicator of mixing used to estimate changes in dissolved oxygen

    USGS Publications Warehouse

    Robertson, Dale M.; Imberger, Jorg

    1994-01-01

    Lake Number, LN, values are shown to be quantitative indicators of deep mixing in lakes and reservoirs that can be used to estimate changes in deep water dissolved oxygen (DO) concentrations. LN is a dimensionless parameter defined as the ratio of the moments about the center of volume of the water body, of the stabilizing force of gravity associated with density stratification to the destabilizing forces supplied by wind, cooling, inflow, outflow, and other artificial mixing devices. To demonstrate the universality of this parameter, LN values are used to describe the extent of deep mixing and are compared with changes in DO concentrations in three reservoirs in Australia and four lakes in the U.S.A., which vary in productivity and mixing regimes. A simple model is developed which relates changes in LN values, i.e., the extent of mixing, to changes in near bottom DO concentrations. After calibrating the model for a specific system, it is possible to use real-time LN values, calculated using water temperature profiles and surface wind velocities, to estimate changes in DO concentrations (assuming unchanged trophic conditions).

  20. Granular-flow rheology: Role of shear-rate number in transition regime

    USGS Publications Warehouse

    Chen, C.-L.; Ling, C.-H.

    1996-01-01

    This paper examines the rationale behind the semiempirical formulation of a generalized viscoplastic fluid (GVF) model in the light of the Reiner-Rivlin constitutive theory and the viscoplastic theory, thereby identifying the parameters that control the rheology of granular flow. The shear-rate number (N) proves to be among the most significant parameters identified from the GVF model. As N ??? 0 and N ??? ???, the GVF model can reduce asymptotically to the theoretical stress versus shear-rate relations in the macroviscous and graininertia regimes, respectively, where the grain concentration (C) also plays a major role in the rheology of granular flow. Using available data obtained from the rotating-cylinder experiments of neutrally buoyant solid spheres dispersing in an interstitial fluid, the shear stress for granular flow in transition between the two regimes proves dependent on N and C in addition to some material constants, such as the coefficient of restitution. The insufficiency of data on rotating-cylinder experiments cannot presently allow the GVF model to predict how a granular flow may behave in the entire range of N; however, the analyzed data provide an insight on the interrelation among the relevant dimensionless parameters.

  1. Theory of cylindrical and spherical Langmuir probes in the limit of vanishing Debye number

    SciTech Connect

    Parrot, M.J.M.; Storey, L.R.O.; Parker, L.W.; Laframboise, J.G.

    1982-12-01

    A theory has been developed for cylindrical and spherical probes and other collectors in collisionless plasmas, in the limit where the ratio of Debye length to probe radius (the Debye number lambda/sub D/) vanishes. Results are presented for the case of equal electron and ion temperatures. On the scale of the probe radius, the distributions of potential and density in the presheath appear to have infinite slope at the probe surface. The dimensionless current--voltage characteristic is the same for the cylinder as for the sphere, within the limits of error of the numerical results, although no physical reason for this is evident. As the magnitude of probe potential (relative to space) increases, the current does not saturate abruptly but only asymptotically; its limiting value is about 45% larger than at space potential. Probe currents for small nonzero lambda/sub D/ approach those for zero lambda/sub D/ only very slowly, showing power-law behavior as function of lambda/sub D/ in the limit as lambda/sub D/ ..-->.. 0, with power-law exponents less than unity, resulting in infinite limiting derivatives with respect to lambda/sub D/.

  2. Adjuncts Build Strength in Numbers

    ERIC Educational Resources Information Center

    June, Audrey Williams

    2012-01-01

    When professors in positions that offer no chance of earning tenure begin to stack the faculty, campus dynamics start to change. Growing numbers of adjuncts make themselves more visible. They push for roles in governance, better pay and working conditions, and recognition for work well done. And they do so at institutions where tenured faculty,…

  3. Materiales. Numbers 21-23.

    ERIC Educational Resources Information Center

    Materiales, 1997

    1997-01-01

    These three journals of contemporary cultural, historical, and social interest contain activities designed to enhance the awareness of students of Spanish as a foreign language regarding the entire panorama of daily life in Spain. Number 21 focuses on the role of modern Spanish women; their career status; female authors; and the changing place of…

  4. Residual number processing in dyscalculia.

    PubMed

    Cappelletti, Marinella; Price, Cathy J

    2014-01-01

    Developmental dyscalculia - a congenital learning disability in understanding numerical concepts - is typically associated with parietal lobe abnormality. However, people with dyscalculia often retain some residual numerical abilities, reported in studies that otherwise focused on abnormalities in the dyscalculic brain. Here we took a different perspective by focusing on brain regions that support residual number processing in dyscalculia. All participants accurately performed semantic and categorical colour-decision tasks with numerical and non-numerical stimuli, with adults with dyscalculia performing slower than controls in the number semantic tasks only. Structural imaging showed less grey-matter volume in the right parietal cortex in people with dyscalculia relative to controls. Functional MRI showed that accurate number semantic judgements were maintained by parietal and inferior frontal activations that were common to adults with dyscalculia and controls, with higher activation for participants with dyscalculia than controls in the right superior frontal cortex and the left inferior frontal sulcus. Enhanced activation in these frontal areas was driven by people with dyscalculia who made faster rather than slower numerical decisions; however, activation could not be accounted for by response times per se, because it was greater for fast relative to slow dyscalculics but not greater for fast controls relative to slow dyscalculics. In conclusion, our results reveal two frontal brain regions that support efficient number processing in dyscalculia.

  5. A generalized sense of number

    PubMed Central

    Arrighi, Roberto; Togoli, Irene; Burr, David C.

    2014-01-01

    Much evidence has accumulated to suggest that many animals, including young human infants, possess an abstract sense of approximate quantity, a number sense. Most research has concentrated on apparent numerosity of spatial arrays of dots or other objects, but a truly abstract sense of number should be capable of encoding the numerosity of any set of discrete elements, however displayed and in whatever sensory modality. Here, we use the psychophysical technique of adaptation to study the sense of number for serially presented items. We show that numerosity of both auditory and visual sequences is greatly affected by prior adaptation to slow or rapid sequences of events. The adaptation to visual stimuli was spatially selective (in external, not retinal coordinates), pointing to a sensory rather than cognitive process. However, adaptation generalized across modalities, from auditory to visual and vice versa. Adaptation also generalized across formats: adapting to sequential streams of flashes affected the perceived numerosity of spatial arrays. All these results point to a perceptual system that transcends vision and audition to encode an abstract sense of number in space and in time. PMID:25377454

  6. Strouhal number for free swimming

    NASA Astrophysics Data System (ADS)

    Saadat, Mehdi; van Buren, Tyler; Floryan, Daniel; Smits, Alexander; Haj-Hariri, Hossein

    2015-11-01

    In this work, we present experimental results to explore the implications of free swimming for Strouhal number (as an outcome) in the context of a simple model for a fish that consists of a 2D virtual body (source of drag) and a 2D pitching foil (source of thrust) representing cruising with thunniform locomotion. The results validate the findings of Saadat and Haj-Hariri (2012): for pitching foils thrust coefficient is a function of Strouhal number for all gaits having amplitude less than a certain critical value. Equivalently, given the balance of thrust and drag forces at cruise, Strouhal number is only a function of the shape, i.e. drag coefficient and area, and essentially a constant for high enough swimming speeds for which the mild dependence of drag coefficient on the speed vanishes. Furthermore, a dimensional analysis generalizes the findings. A scaling analysis shows that the variation of Strouhal number with cruising speed is functionally related to the variation of body drag coefficient with speed. Supported by ONR MURI Grant N00014-14-1-0533.

  7. Winding number constrained contour detection.

    PubMed

    Ming, Yansheng; Li, Hongdong; He, Xuming

    2015-01-01

    Salient contour detection can benefit from the integration of both contour cues and region cues. However, this task is difficult due to different nature of region representations and contour representations. To solve this problem, this paper proposes an energy minimization framework based on winding number constraints. In this framework, both region cues, such as color/texture homogeneity, and contour cues, such as local contrast and continuity, are represented in a joint objective function, which has both region and contour labels. The key problem is how to design constraints that ensure the topological consistency of the two kinds of labels. Our technique is based on the topological concept of winding number. Using a fast method for winding number computation, a small number of linear constraints are derived to ensure label consistency. Our method is instantiated by ratio-based energy functions. By successfully integrating both region and contour cues, our method shows advantages over competitive methods. Our method is extended to incorporate user interaction, which leads to further improvements.

  8. Time to Make the Numbers

    ERIC Educational Resources Information Center

    Surrena, Michelle

    2011-01-01

    In order to inspire her students to work in mixed media, the author chose to highlight the art of Jasper Johns and Robert Indiana, both of whom used numbers and letters as a main focus in their art. In this article, the author describes a mixed-media printmaking project. (Contains 2 online resources.)

  9. Number Crunching: A Sheep's Tale

    ERIC Educational Resources Information Center

    Sam, Chris Lam

    2005-01-01

    In this article, the author talks about an allegorical tale which he has written as a message for teachers of mathematics. The story is about Gordon, who led a flock of small sheep. Gordon was a mathematics genius; however, his flock criticized his teaching of numbers and his boring lectures. His furry-god-farmer advised him to share his…

  10. Whole Number Subtraction -- An Analysis.

    ERIC Educational Resources Information Center

    Gilpin, John B.

    This document is intended as a resource for persons using, designing, or evaluating instructional materials in whole number subtraction. Its purpose is to provide conceptual machinery: (1) for describing/specifying subtraction tests and exercises and (2) for formulating related questions and conjectures. It is mainly a logical analysis subject to…

  11. Not Just a Number Anymore

    ERIC Educational Resources Information Center

    Henderson, Nancy

    2008-01-01

    In the Essex, Cincinnati retirement center where they both worked as nurses, Holly Doherty and Michele Schavoir often heard aides complain about one longtime resident in particular. The patient kicks and screams and nurses can not stand to be around her. After a year of playing detective, Doherty found a number of the patient's relatives in…

  12. An Estimate of Avogadro's Number.

    ERIC Educational Resources Information Center

    Stauffer, Frederic R.

    1991-01-01

    Calculates an approximation to Avagadro's number for one mole of water by assuming the mole to be in cubical form and then halving the cube three times, thereby doubling the surface area of the original cube. The calculations are derived from the work necessary to perform these divisions. Presents calculated values for several liquids. (MDH)

  13. High Reynolds number research - 1980

    NASA Technical Reports Server (NTRS)

    Mckinney, L. W. (Editor); Baals, D. D. (Editor)

    1981-01-01

    The fundamental aerodynamic questions for which high Reynolds number experimental capability is required were examined. Potential experiments which maximize the research returns from the use of the National Transonic Facility (NTF) were outlined. Calibration plans were reviewed and the following topics were discussed: fluid dynamics; high lit; configuration aerodynamics; aeroelasticity and unsteady aerodynamics; wind tunnel/flight correlation; space vehicles; and theoretical aerodynamics

  14. Materiales. Numbers 17-20.

    ERIC Educational Resources Information Center

    Materiales, 1995

    1995-01-01

    Four booklets present articles on Spanish language and culture aimed at teachers of Spanish in the United States for student use in their classes. Number 17, "Los Jovenes Espanoles" (Spanish Youth), includes articles on Spanish youth sports, music, gangs, thoughts, and t-shirt slogans: (1) "Young Spanish Athletes"; (2)…

  15. Solar System Number-Crunching.

    ERIC Educational Resources Information Center

    Albrecht, Bob; Firedrake, George

    1997-01-01

    Defines terrestrial and Jovian planets and provides directions to obtain planetary data from the National Space Science Data Center Web sites. Provides "number-crunching" activities for the terrestrial planets using Texas Instruments TI-83 graphing calculators: computing volumetric mean radius and volume, density, ellipticity, speed,…

  16. Questioning Zero and Negative Numbers

    ERIC Educational Resources Information Center

    Wilcox, Virginia B.

    2008-01-01

    After experiencing a Developing Mathematical Ideas (DMI) class on the construction of algebraic concepts surrounding zero and negative numbers, the author conducted an interview with a first grader to determine the youngster's existing level of understanding about these topics. Uncovering young students' existing understanding can provide focus…

  17. A generalized sense of number.

    PubMed

    Arrighi, Roberto; Togoli, Irene; Burr, David C

    2014-12-22

    Much evidence has accumulated to suggest that many animals, including young human infants, possess an abstract sense of approximate quantity, a number sense. Most research has concentrated on apparent numerosity of spatial arrays of dots or other objects, but a truly abstract sense of number should be capable of encoding the numerosity of any set of discrete elements, however displayed and in whatever sensory modality. Here, we use the psychophysical technique of adaptation to study the sense of number for serially presented items. We show that numerosity of both auditory and visual sequences is greatly affected by prior adaptation to slow or rapid sequences of events. The adaptation to visual stimuli was spatially selective (in external, not retinal coordinates), pointing to a sensory rather than cognitive process. However, adaptation generalized across modalities, from auditory to visual and vice versa. Adaptation also generalized across formats: adapting to sequential streams of flashes affected the perceived numerosity of spatial arrays. All these results point to a perceptual system that transcends vision and audition to encode an abstract sense of number in space and in time.

  18. Oxidation Numbers and Their Limitations.

    ERIC Educational Resources Information Center

    Woolf, A. A.

    1988-01-01

    Reviews a method for determining oxidation numbers in covalent compounds and balancing mixed organic-inorganic or purely organic systems. Points out ambiguities presented when adjacent atoms have small or zero electronegativity differences. Presents other limitations that arise when using electronegativity values. (CW)

  19. Upper bounds on Nusselt number at finite Prandtl number

    NASA Astrophysics Data System (ADS)

    Choffrut, Antoine; Nobili, Camilla; Otto, Felix

    2016-02-01

    We study Rayleigh-Bénard convection based on the Boussinesq approximation. We are interested in upper bounds on the Nusselt number Nu, the upwards heat transport, in terms of the Rayleigh number Ra, that characterizes the relative strength of the driving mechanism and the Prandtl number Pr, that characterizes the strength of the inertial effects. We show that, up to logarithmic corrections, the upper bound Nu ≲Ra1/3 from [1] persists as long as Pr ≳Ra1/3 and then crosses over to Nu ≲Pr-1/2Ra1/2. This result improves the one of Wang [2] by going beyond the perturbative regime Pr ≫ Ra . The proof uses a new way to estimate the transport nonlinearity in the Navier-Stokes equations capitalizing on the no-slip boundary condition. It relies on a new Calderón-Zygmund estimate for the non-stationary Stokes equations in L1 with a borderline Muckenhoupt weight.

  20. Statistical error in particle simulations of low mach number flows

    SciTech Connect

    Hadjiconstantinou, N G; Garcia, A L

    2000-11-13

    We present predictions for the statistical error due to finite sampling in the presence of thermal fluctuations in molecular simulation algorithms. The expressions are derived using equilibrium statistical mechanics. The results show that the number of samples needed to adequately resolve the flowfield scales as the inverse square of the Mach number. Agreement of the theory with direct Monte Carlo simulations shows that the use of equilibrium theory is justified.

  1. The bispectrum of relativistic galaxy number counts

    SciTech Connect

    Dio, Enea Di; Durrer, Ruth; Marozzi, Giovanni; Montanari, Francesco E-mail: Ruth.Durrer@unige.ch E-mail: Francesco.Montanari@helsinki.fi

    2016-01-01

    We discuss the dominant terms of the relativistic galaxy number counts to second order in cosmological perturbation theory on sub-Hubble scales and on intermediate to large redshifts. In particular, we determine their contribution to the bispectrum. In addition to the terms already known from Newtonian second order perturbation theory, we find that there are a series of additional 'lensing-like' terms which contribute to the bispectrum. We derive analytical expressions for the full leading order bispectrum and we evaluate it numerically for different configurations, indicating how they can be measured with upcoming surveys. In particular, the new 'lensing-like' terms are not negligible for wide redshift bins and even dominate the bispectrum at well separated redshifts. This offers us the possibility to measure them in future surveys.

  2. Quantum Hurwitz numbers and Macdonald polynomials

    NASA Astrophysics Data System (ADS)

    Harnad, J.

    2016-11-01

    Parametric families in the center Z(C[Sn]) of the group algebra of the symmetric group are obtained by identifying the indeterminates in the generating function for Macdonald polynomials as commuting Jucys-Murphy elements. Their eigenvalues provide coefficients in the double Schur function expansion of 2D Toda τ-functions of hypergeometric type. Expressing these in the basis of products of power sum symmetric functions, the coefficients may be interpreted geometrically as parametric families of quantum Hurwitz numbers, enumerating weighted branched coverings of the Riemann sphere. Combinatorially, they give quantum weighted sums over paths in the Cayley graph of Sn generated by transpositions. Dual pairs of bases for the algebra of symmetric functions with respect to the scalar product in which the Macdonald polynomials are orthogonal provide both the geometrical and combinatorial significance of these quantum weighted enumerative invariants.

  3. 'Magic numbers' in the melting of a cluster of point charges on a sphere

    SciTech Connect

    Livshits, A. M. Lozovik, Yu. E.

    2010-11-15

    The thermodynamic properties of a cluster of point Coulomb charges on a sphere have been analyzed using the Monte Carlo method for the number of charges 20 {<=} N {<=} 90. The ground state of the system of charges is described in the model of a closed quasi-two-dimensional triangular lattice with topological defects. We have determined the dependence of the Lindeman parameter {delta}{sub L} of this system on N and on the dimensionless parameter, which is proportional to the temperature T and to the radius R of the cluster, where element is the dielectric constant of the medium and the charge of a particle. The 'magic numbers,' i.e., the N values, for which the melting point of the closed triangular lattice of charges is much higher than those for neighboring N values, have been found. The evolution of the lattice-melting mechanisms with an increase in the number of charges N in a mesoscopic cluster has been analyzed. For N {<=} 32, the melting of the lattice does not involve dislocations (nontopological melting); this behavior of the mesoscopic system of charges on the sphere differs from the behavior of the extended planar two-dimensional system. At N {>=} 50, melting is accompanied by the formation of dislocations. The mechanism of dislocation-free non-topological melting of a closed lattice, which occurs at small N values and is associated with the cooperative rotational motion of 'rings' of particles, has been analyzed. The model has various implementations in the mesoscopic region; in particular, it describes the system of electrons over the liquid-helium cluster, the liquid-helium cluster with incorporated charged particles, a multielectron bubble in liquid helium, a charged quantum dot, etc.

  4. Strouhal number dependency of the aero-acoustic response of wall perforations under combined grazing-bias flow

    NASA Astrophysics Data System (ADS)

    Moers, E. M. T.; Tonon, D.; Hirschberg, A.

    2017-02-01

    The influence of low Mach number grazing-bias flow on the linear acoustic response of slit shaped wall perforations is determined in terms of a dimensionless acoustical impedance for Strouhal numbers based on the perforation width of order unity. The influence of edge geometries is studied by experiments. In particular, slanted slits under an angle of 30° with respect to the grazing flow direction are considered. Sound production, i.e. whistling potentiality corresponding to a negative real part of the impedance, is observed for various geometries and flow conditions. Sound production restricts the largest perforation size which can be used in practice for acoustical liners. Whistling in the limit cases of purely bias and purely grazing flows can be explained qualitatively in terms of Vortex Sound Theory. For combined bias/grazing flow, most of the oscillations in the impedance as a function of the Strouhal number are related to these limit behaviours. A configuration with thin sharp edges both upstream and downstream corresponds to commonly used theoretical models assuming an infinite thin wall. This configuration displays a behaviour drastically different from a more realistic perforation geometry with sharp square edges.

  5. Energy: Selected Facts and Numbers

    DTIC Science & Technology

    2008-08-08

    air quality by reducing emissions led utilities to convert a number of coal-fired powerplants to burn oil, and many new plants were designed to burn...years were recently submitted, but no new plants are currently under construction or on order. Construction of major hydroelectric projects has also...5.1 and 5.13a-d. Percentages calculated by CRS. Industrial consumption of petroleum, which includes such large consumers as refineries and

  6. Prism. Volume 3, Number 1

    DTIC Science & Technology

    2011-12-01

    person shall be subject to a penalty for failing to comply with a collection of information if it does not display a currently valid OMB control number...points, and other population- control measures imposed as part of the counterinsurgency cam- paign. While these may seem repressive, specific case...structures and forces that share one’s agenda, either in part or in full, does not represent an abdication of control or loss of ini- tiative; it is in

  7. Complex numbers in quantum theory

    NASA Astrophysics Data System (ADS)

    Maynard, Glenn

    In 1927, Nobel prize winning physicist, E. Schrodinger, in correspondence with Ehrenfest, wrote the following about the new theory: "What is unpleasant here, and indeed directly to be objected to, is the use of complex numbers. Psi is surely fundamentally a real function." This seemingly simple issue remains unexplained almost ninety years later. In this dissertation I elucidate the physical and theoretical origins of the complex requirement. (Abstract shortened by ProQuest.).

  8. Approximate number sense, symbolic number processing, or number-space mappings: what underlies mathematics achievement?

    PubMed

    Sasanguie, Delphine; Göbel, Silke M; Moll, Kristina; Smets, Karolien; Reynvoet, Bert

    2013-03-01

    In this study, the performance of typically developing 6- to 8-year-old children on an approximate number discrimination task, a symbolic comparison task, and a symbolic and nonsymbolic number line estimation task was examined. For the first time, children's performances on these basic cognitive number processing tasks were explicitly contrasted to investigate which of them is the best predictor of their future mathematical abilities. Math achievement was measured with a timed arithmetic test and with a general curriculum-based math test to address the additional question of whether the predictive association between the basic numerical abilities and mathematics achievement is dependent on which math test is used. Results revealed that performance on both mathematics achievement tests was best predicted by how well childrencompared digits. In addition, an association between performance on the symbolic number line estimation task and math achievement scores for the general curriculum-based math test measuring a broader spectrum of skills was found. Together, these results emphasize the importance of learning experiences with symbols for later math abilities.

  9. Quasiperpendicular High Mach Number Shocks

    NASA Astrophysics Data System (ADS)

    Sulaiman, A. H.; Masters, A.; Dougherty, M. K.; Burgess, D.; Fujimoto, M.; Hospodarsky, G. B.

    2015-09-01

    Shock waves exist throughout the Universe and are fundamental to understanding the nature of collisionless plasmas. Reformation is a process, driven by microphysics, which typically occurs at high Mach number supercritical shocks. While ongoing studies have investigated this process extensively both theoretically and via simulations, their observations remain few and far between. In this Letter we present a study of very high Mach number shocks in a parameter space that has been poorly explored and we identify reformation using in situ magnetic field observations from the Cassini spacecraft at 10 AU. This has given us an insight into quasiperpendicular shocks across 2 orders of magnitude in Alfvén Mach number (MA ) which could potentially bridge the gap between modest terrestrial shocks and more exotic astrophysical shocks. For the first time, we show evidence for cyclic reformation controlled by specular ion reflection occurring at the predicted time scale of ˜0.3 τc , where τc is the ion gyroperiod. In addition, we experimentally reveal the relationship between reformation and MA and focus on the magnetic structure of such shocks to further show that for the same MA , a reforming shock exhibits stronger magnetic field amplification than a shock that is not reforming.

  10. Simple low Reynolds number microswimmers

    NASA Astrophysics Data System (ADS)

    Cheang, U. Kei; Kim, Min Jun

    2016-11-01

    An extremely simple low Reynolds number microswimmer had been observed to swim in bulk fluid. The development of microscopic swimmers had been hindered by technical limitations in micro- and nanofabrication. To address this practical problem, the minimal geometrical requirements for swimming in low Reynolds number has been investigated. Micro- and nanofabrication of complex shapes with specialized materials, such as helices or flexible bodies, on a massive scale requires sophisticated state of the art technologies which have size limitations. In contrast, simple shaped structures, such as spherical particles, can be synthesized massively using chemical methods with relative ease at low costs. In this work, simple microswimmers were fabricated by conjugating two microbeads with debris attached to their surface. The debris allow the 2-bead structures to have two or more planes of symmetry, thus, allowing them to swim in bulk fluid at low Reynolds number. The microswimmers are magnetically actuated and controlled via a rotating magnetic field generated by an electromagnetic coil system. The microswimmers' velocity profiles had been characterized with respect to increasing rotating frequency. Furthermore, the motion of the microswimmers were analyzed using image processing. Finally, their swimming capability had been shown through experiments by steering the microswimmers in any desired direction.

  11. A Pseudo-Random Number Generator Based on Normal Numbers

    SciTech Connect

    Bailey, David H.

    2004-12-31

    In a recent paper, Richard Crandall and the present author established that each of a certain class of explicitly given real constants, uncountably infinite in number, is b-normal, for an integer that appears in the formula defining the constant. A b-normal constant is one where every string of m digits appears in the base-b expansion of the constant with limiting frequency b{sup -m}. This paper shows how this result can be used to fashion an efficient and effective pseudo-random number generator, which generates successive strings of binary digits from one of the constants in this class. The resulting generator, which tests slightly faster than a conventional linear congruential generator, avoids difficulties with large power-of-two data access strides that may occur when using conventional generators. It is also well suited for parallel processing--each processor can quickly and independently compute its starting value, with the collective sequence generated by all processors being the same as that generated by a single processor.

  12. An experimental analysis of bed load transport in gravel-bed braided rivers with high grain Reynolds numbers

    NASA Astrophysics Data System (ADS)

    De Vincenzo, Annamaria; Brancati, Francesco; Pannone, Marilena

    2016-08-01

    Laboratory experiments were performed with nearly uniform fluvial gravel (D50=9 mm, D10=5 mm and D90=13 mm) to analyse the relationship between stream power and bed load transport rate in gravel-bed braided rivers at high grain Reynolds numbers. The values of the unit-width dimensionless bed-load rate qb* and unit-width dimensionless stream power ω* were evaluated in equilibrium conditions based on ten different experimental runs. Then, they were plotted along with values obtained during particularly representative field studies documented in the literature, and a regression law was derived. For comparison, a regression analysis was performed using the data obtained from laboratory experiments characterized by smaller grain sizes and, therefore, referring to relatively low grain Reynolds numbers. A numerical integration of Exner's equation was performed to reconstruct the local and time-dependent functional dependence of qb* and ω*. The results led to the following conclusions: 1) At equilibrium, the reach-averaged bed load transport rate is related to the reach-averaged stream power by different regression laws at high and low grain Reynolds numbers. Additionally, the transition from bed to suspended load transport is accelerated by low Re*, with the corresponding bed load discharge increasing with stream power at a lower, linear rate. 2) When tested against the gravel laboratory measurements, the high Re* power law derived in the present study performs considerably better than do previous formulas. 3) The longitudinal variability of the section-averaged equilibrium stream power is much more pronounced than that characterizing the bed load rate, at least for high Re*. Thus, the stream power and its local-scale heterogeneity seem to be directly responsible for transverse sediment re-distribution and, ultimately, for the determination of the spatial and temporal scales that characterize the gravel bedforms. 4) Finally, the stochastic interpretation of the wetted

  13. The conceptual representation of number.

    PubMed

    Patson, Nikole D; George, Gerret; Warren, Tessa

    2014-01-01

    The experiments reported here investigated the format of plural conceptual representations using a picture-matching paradigm. In Experiment 1, participants read sentences that ended with a singular noun phrase (NP), a two-quantified plural NP, or a plural definite description [The parents handed the child the (two) crayon/s] and then saw a picture of one or multiple referents for the NP. Judgement times to confirm that there was overlap between the pictured object(s) and a noun in the sentence showed an interaction between the NP's number and NP-picture match. For singular NPs and two-quantified NPs, participants were reliably faster to respond "yes" to a picture that had the exact number of objects specified by the NP, but for plural definite descriptions, the effect of the number of pictured items was not reliable. Experiment 2 extended this finding to conceptual plurals. Participants read sentences biased toward either a collective (Together the men carried a box-box is interpreted as singular) or distributed (Each of the men carried a box-box is likely interpreted as plural) reading. Experiment 2 showed the same interaction between NP conceptual plurality and NP-picture match as that in Experiment 1. These results suggest that: (a) our default conceptual representations for plural definite descriptions are no more similar to images of small sets of multiple items than to images of singular items; and (b) the difference between singular and plural conceptual representations is unlikely to be simply the presence or absence of a plural feature. The results are consistent with theories in which plurality is unmarked, such that some plural NPs can refer to singular referents [e.g., Sauerland, U., Anderssen, J., & Yatsushiro, J. (2005). The plural is semantically unmarked. In S. Kepser & M. Reis (Eds.), Linguistic evidence (pp. 413-434). Berlin: de Gruyter].

  14. Dynamic Modeling for Development and Education: From Concepts to Numbers

    ERIC Educational Resources Information Center

    Van Geert, Paul

    2014-01-01

    The general aim of the article is to teach the reader how to transform conceptual models of change, development, and learning into mathematical expressions and how to use these equations to build dynamic models by means of the widely used spreadsheet program Excel. The explanation is supported by a number of Excel files, which the reader can…

  15. Valence, Covalence, Hypervalence, Oxidation State, and Coordination Number

    ERIC Educational Resources Information Center

    Smith, Derek W.

    2005-01-01

    Valence as a numerical measure of an atom's combining power, expressed by the number of bonds it forms in a molecular formulation of the compound in question, was unable to cope with coordination compounds. The covalence of an atom is the nearest model equivalent, but is subject to ambiguity since it often depends on which bonding model is being…

  16. Formation number for vortex dipoles

    NASA Astrophysics Data System (ADS)

    Sadri, Vahid; Krueger, Paul S.

    2016-11-01

    This investigation considers the axisymmetric formation of two opposite sign concentric vortex rings from jet ejection between concentric cylinders. This arrangement is similar to planar flow in that the vortex rings will travel together when the gap between the cylinders is small, similar to a vortex dipole, but it has the advantage that the vortex motion is less constrained than the planar case (vortex stretching and vortex line curvature is allowed). The flow was simulated numerically at a jet Reynolds number of 1,000 (based on ΔR and the jet velocity), jet pulse length-to-gap ratio (L / ΔR) in the range 10-20, and gap-to-outer radius ratio (ΔR /Ro) in the range 0.01-0.1. Small gap ratios were chosen for comparison with 2D results. In contrast with 2D results, the closely paired vortices in this study exhibited pinch-off from the generating flow and finite formation numbers. The more complex flow evolution afforded by the axisymmetric model and its influence on the pinch-off process will be discussed. This material is based on work supported by the National Science Foundation under Grant No. 1133876 and SMU. This supports are gratefully acknowledged.

  17. Modeling the number of car theft using Poisson regression

    NASA Astrophysics Data System (ADS)

    Zulkifli, Malina; Ling, Agnes Beh Yen; Kasim, Maznah Mat; Ismail, Noriszura

    2016-10-01

    Regression analysis is the most popular statistical methods used to express the relationship between the variables of response with the covariates. The aim of this paper is to evaluate the factors that influence the number of car theft using Poisson regression model. This paper will focus on the number of car thefts that occurred in districts in Peninsular Malaysia. There are two groups of factor that have been considered, namely district descriptive factors and socio and demographic factors. The result of the study showed that Bumiputera composition, Chinese composition, Other ethnic composition, foreign migration, number of residence with the age between 25 to 64, number of employed person and number of unemployed person are the most influence factors that affect the car theft cases. These information are very useful for the law enforcement department, insurance company and car owners in order to reduce and limiting the car theft cases in Peninsular Malaysia.

  18. Excitons in conjugated polymers: wavefunctions, symmetries, and quantum numbers.

    PubMed

    Barford, William; Paiboonvorachat, Nattapong

    2008-10-28

    We introduce a mapping from configuration interaction singles wavefunctions, expressed as linear combinations of particle-hole excitations between Hartree-Fock molecular orbitals, to real-space exciton wavefunctions, expressed as linear combinations of particle-hole excitations between localized Wannier functions. The exciton wavefunction is a two-dimensional amplitude for the exciton center-of-mass coordinate, R, and the electron-hole separation (or relative coordinate), r, having an exact analogy to one-dimensional hydrogenlike wavefunctions. We describe the excitons by their appropriate quantum numbers, namely, the principle quantum number, n, associated with r and the center-of-mass pseudomomentum quantum number, j, associated with R. In addition, for models with particle-hole symmetry, such as the Pariser-Parr-Pople model, we emphasize the connection between particle-hole symmetry and particle-hole parity. The method is applied to the study of excitons in trans-polyacetylene and poly(para-phenylene).

  19. Indexing the approximate number system.

    PubMed

    Inglis, Matthew; Gilmore, Camilla

    2014-01-01

    Much recent research attention has focused on understanding individual differences in the approximate number system, a cognitive system believed to underlie human mathematical competence. To date researchers have used four main indices of ANS acuity, and have typically assumed that they measure similar properties. Here we report a study which questions this assumption. We demonstrate that the numerical ratio effect has poor test-retest reliability and that it does not relate to either Weber fractions or accuracy on nonsymbolic comparison tasks. Furthermore, we show that Weber fractions follow a strongly skewed distribution and that they have lower test-retest reliability than a simple accuracy measure. We conclude by arguing that in the future researchers interested in indexing individual differences in ANS acuity should use accuracy figures, not Weber fractions or numerical ratio effects.

  20. Getting DNA copy numbers without control samples

    PubMed Central

    2012-01-01

    Background The selection of the reference to scale the data in a copy number analysis has paramount importance to achieve accurate estimates. Usually this reference is generated using control samples included in the study. However, these control samples are not always available and in these cases, an artificial reference must be created. A proper generation of this signal is crucial in terms of both noise and bias. We propose NSA (Normality Search Algorithm), a scaling method that works with and without control samples. It is based on the assumption that genomic regions enriched in SNPs with identical copy numbers in both alleles are likely to be normal. These normal regions are predicted for each sample individually and used to calculate the final reference signal. NSA can be applied to any CN data regardless the microarray technology and preprocessing method. It also finds an optimal weighting of the samples minimizing possible batch effects. Results Five human datasets (a subset of HapMap samples, Glioblastoma Multiforme (GBM), Ovarian, Prostate and Lung Cancer experiments) have been analyzed. It is shown that using only tumoral samples, NSA is able to remove the bias in the copy number estimation, to reduce the noise and therefore, to increase the ability to detect copy number aberrations (CNAs). These improvements allow NSA to also detect recurrent aberrations more accurately than other state of the art methods. Conclusions NSA provides a robust and accurate reference for scaling probe signals data to CN values without the need of control samples. It minimizes the problems of bias, noise and batch effects in the estimation of CNs. Therefore, NSA scaling approach helps to better detect recurrent CNAs than current methods. The automatic selection of references makes it useful to perform bulk analysis of many GEO or ArrayExpress experiments without the need of developing a parser to find the normal samples or possible batches within the data. The method is

  1. CRC (Coordinating Research Council) octane number requirement survey, 1988

    SciTech Connect

    Not Available

    1989-08-01

    An annual statistical survey of octane number requirements of late-model vehicles is conducted by the Coordinating Research Council, Inc. Test data were obtained by nineteen companies on 391 1988 vehicles including passenger cars and light-duty trucks and vans, of which 155 were equipped with knock sensors. Maximum octane-number requirements were determined by testing at maximum-throttle conditions, as well as at part-throttle, with three unleaded fuel series of varying sensitivities. Requirements are expressed as the (R+M)/2 octane number, Research octane number, and Motor octane number of the reference fuel producing knock which was recurrent and repeatable at the lowest audible level. Estimated octane number requirements for the total vehicles are weighted in proportion to the 1988-vehicle-model production and/or sales figures. The maximum octane number requirements of 1988 models with average sensitivity unleaded fuels were 84.7 (R+M)/2 octane numbers at the 50% satisfaction level, and 89.3 (R+M)/2 octane numbers at the 90% satisfaction level. Comparison with previous Surveys are made in this report.

  2. Near-wall effects for momentum, heat and mass transport in gas-particle suspensions at moderate Reynolds numbers

    NASA Astrophysics Data System (ADS)

    Radl, Stefan; Municchi, Federico; Goniva, Christoph

    2016-11-01

    Understanding transport phenomena in fluid-particle systems is of primary importance for the design of large-scale equipment, e.g., in the chemical industry. Typically, the analysis of such systems is performed by numerically solving a set of partial differential equations modeling the particle phase and the fluid phase as interpenetrating continua. Such models require a number of closure models that are often constructed via spatial filtering of data obtained from particle-resolved direct numerical simulations (PR-DNS). In the present work we make use of PR-DNS to evaluate corrections to existing closure models. Specifically, we aim on accounting for wall effects on the fluid-particle drag force and the particle-individual Nusselt number. We then propose an improved closure model to be used in particle-unresolved Euler-Lagrange (PU-EL) simulations. We demonstrate that such an advanced closure should account for a dimensionless filter size, as well as a normalized distance from the wall. In addition, we make an attempt to model the filtered fluid velocity profile in wall-bounded suspension flows. The authors acknowledge funding from the European Commission through FP7 Grant Agreement No. 604656, as well as VSC-3 and dcluster.tugraz.at.

  3. Numerical investigations of lift suppression by feedback rotary oscillation of circular cylinder at low Reynolds number

    NASA Astrophysics Data System (ADS)

    Lu, Lin; Qin, Jian-Min; Teng, Bin; Li, Yu-Cheng

    2011-03-01

    This article describes a strategy of active flow control for lift force reduction of circular cylinder subjected to uniform flow at low Reynolds numbers. The flow control is realized by rotationally oscillating the circular cylinder about its axis with ω(t )=-λCL(t), where ω(t ) is the dimensionless angular speed of rotation cylinder, λ is the control parameter and CL(t) is the feedback signal of lift coefficient. The study focuses on seeking optimum λ for the low Reynolds numbers of 60, 80, 100, 150, and 200. The effectiveness of the proposed flow control in suppressing lift force is examined comprehensively by a numerical model based on the finite element solution of two-dimensional Navier-Stokes equations. The dependence of lift reduction on the control parameter λ is investigated. The threshold of λ, denoted by λc, is identified for the Reynolds numbers considered in this work. The numerical results show that the present active rotary oscillation of circular cylinder is able to reduce the amplitude of lift force significantly as long as λ ≤λc, at least 50% for the laminar flow regime. Meanwhile, the present active flow control does not result in the undesirable increase in the drag force. The Strouhal number is observed to decrease slightly with the increase of λ. As for a specific Reynolds number, the larger λ gives rise to the larger amount of lift reduction. The lift reduction reaches the maximum at λ =λc. The mechanism behind the present lift reduction method is revealed by comparing the flow patterns and pressure distributions near the active rotationally oscillating circular cylinder and the stationary circular cylinder. It is found that the critical value λc generally increases with Reynolds number. Two types of lift shift are observed in the numerical results for the cases with λ >λc. The first is characterized by the regular fluctuation of lift coefficient but with nonzero mean value, while the second is associated with the

  4. Redundant Multiple-Valued Number Systems

    DTIC Science & Technology

    1997-07-01

    Fibonacci ou de nombres de Lucas ,” Bull. Soc. Royale Sci. Liege 41, 1972, pp. 179-182. 14-1 ABSTRACT We survey number systems in which the...Figure 5. The 4-Bit One’s Complement Number System. E. FIBONACCI NUMBER SYSTEM The Fibonacci number system is the second example of a redundant number ...instead of powers of 2 or -2, Fibonacci numbers are used as the base. In such a number system, there are many redundant representatives. Fig.

  5. Random Number Generation for High Performance Computing

    DTIC Science & Technology

    2015-01-01

    REPORT TYPE 17. LIMITATION OF ABSTRACT 15. NUMBER OF PAGES 5d. PROJECT NUMBER 5e. TASK NUMBER 5f. WORK UNIT NUMBER 5c. PROGRAM ELEMENT NUMBER...of Distinct Pseudorandom Number Streams Based on Program Context," and "A Statistical Test Method to Quantify Inter-Streams Based on Program Context...regarding the development and implementation of the context aware pseudorandom number generator test program . Provide subject matter expertise (testing

  6. Verification Challenges at Low Numbers

    SciTech Connect

    Benz, Jacob M.; Booker, Paul M.; McDonald, Benjamin S.

    2013-07-16

    This paper will explore the difficulties of deep reductions by examining the technical verification challenges. At each step on the road to low numbers, the verification required to ensure compliance of all parties will increase significantly. Looking post New START, the next step will likely include warhead limits in the neighborhood of 1000 (Pifer 2010). Further reductions will include stepping stones at 100’s of warheads, and then 10’s of warheads before final elimination could be considered of the last few remaining warheads and weapons. This paper will focus on these three threshold reduction levels, 1000, 100’s, 10’s. For each, the issues and challenges will be discussed, potential solutions will be identified, and the verification technologies and chain of custody measures that address these solutions will be surveyed. It is important to note that many of the issues that need to be addressed have no current solution. In these cases, the paper will explore new or novel technologies that could be applied. These technologies will draw from the research and development that is ongoing throughout the national lab complex, and will look at technologies utilized in other areas of industry for their application to arms control verification.

  7. Verification Challenges at Low Numbers

    SciTech Connect

    Benz, Jacob M.; Booker, Paul M.; McDonald, Benjamin S.

    2013-06-01

    Many papers have dealt with the political difficulties and ramifications of deep nuclear arms reductions, and the issues of “Going to Zero”. Political issues include extended deterrence, conventional weapons, ballistic missile defense, and regional and geo-political security issues. At each step on the road to low numbers, the verification required to ensure compliance of all parties will increase significantly. Looking post New START, the next step will likely include warhead limits in the neighborhood of 1000 . Further reductions will include stepping stones at1000 warheads, 100’s of warheads, and then 10’s of warheads before final elimination could be considered of the last few remaining warheads and weapons. This paper will focus on these three threshold reduction levels, 1000, 100’s, 10’s. For each, the issues and challenges will be discussed, potential solutions will be identified, and the verification technologies and chain of custody measures that address these solutions will be surveyed. It is important to note that many of the issues that need to be addressed have no current solution. In these cases, the paper will explore new or novel technologies that could be applied. These technologies will draw from the research and development that is ongoing throughout the national laboratory complex, and will look at technologies utilized in other areas of industry for their application to arms control verification.

  8. Copy Number Profiling of Brazilian Astrocytomas

    PubMed Central

    Bidinotto, Lucas Tadeu; Torrieri, Raul; Mackay, Alan; Almeida, Gisele Caravina; Viana-Pereira, Marta; Cruvinel-Carloni, Adriana; Spina, Maria Luisa; Campanella, Nathalia Cristina; Pereira de Menezes, Weder; Clara, Carlos Afonso; Becker, Aline Paixão; Jones, Chris; Reis, Rui Manuel

    2016-01-01

    Copy number alterations (CNA) are one of the driving mechanisms of glioma tumorigenesis, and are currently used as important biomarkers in the routine setting. Therefore, we performed CNA profiling of 65 astrocytomas of distinct malignant grades (WHO grade I–IV) of Brazilian origin, using array-CGH and microsatellite instability analysis (MSI), and investigated their correlation with TERT and IDH1 mutational status and clinico-pathological features. Furthermore, in silico analysis using the Oncomine database was performed to validate our findings and extend the findings to gene expression level. We found that the number of genomic alterations increases in accordance with glioma grade. In glioblastomas (GBM), the most common alterations were gene amplifications (PDGFRA, KIT, KDR, EGFR, and MET) and deletions (CDKN2A and PTEN). Log-rank analysis correlated EGFR amplification and/or chr7 gain with better survival of the patients. MSI was observed in 11% of GBMs. A total of 69% of GBMs presented TERT mutation, whereas IDH1 mutation was most frequent in diffuse (85.7%) and anaplastic (100%) astrocytomas. The combination of 1p19q deletion and TERT and IDH1 mutational status separated tumor groups that showed distinct age of diagnosis and outcome. In silico validation pointed to less explored genes that may be worthy of future investigation, such as CDK2, DMRTA1, and MTAP. Herein, using an extensive integrated analysis, we indicated potentially important genes, not extensively studied in gliomas, that could be further explored to assess their biological and clinical impact in astrocytomas. PMID:27172220

  9. Access to emergency number services.

    PubMed

    Harkins, Judith E; Strauss, Karen Peltz

    2008-01-01

    Access to emergency services is mandated by Title II of the Americans with Disabilities Act (ADA). The Department of Justice oversees the accessibility of public safety answering points (PSAPs), popularly called 9-1-1 centers. The Federal Communications Commission (FCC) has at least two roles in emergency number access: (1) as regulator of the ADA's Title IV on telecommunications access, and (2) as regulator of communications companies with regard to support of and interconnection with PSAPs. The rules of both agencies contributed significantly to the improvement during the 1990s of access to 9-1-1 for people who are deaf, hard of hearing, or speech disabled. However, as new technologies for text wireless communications and relay services have moved quickly to Internet protocol (IP)-based technologies over the past 5-8 years, the use of traditional wireline telephones and text telephones among deaf, hard of hearing, and speech-disabled people has declined. PSAPs cannot be contacted via the newer forms of telecommunications, such as e-mail, instant messaging, and IP-based forms of relay services, including video relay services. The gap between the technology supported by policy and the technologies currently being used by deaf and hard of hearing people has become a serious problem that is difficult to solve because of the separate jurisdictions of the two agencies, the need for coordination within the FCC, technological challenges, and funding issues. In this article, the key policy and technology challenges will be analyzed and recommendations made for short-and long-term solutions to this dilemma.

  10. Numbers, Counting, and Infinity in Middle Schools.

    ERIC Educational Resources Information Center

    Meconi, L. J.

    1992-01-01

    Discusses the use of middle-school students' natural understanding of large numbers to introduce the concept of infinity. Presents activities that investigate infinite sets by demonstrating a one-to-one correspondence between the counting numbers and the given set. Examples include prime numbers, Fibonacci numbers, fractions, even and odd numbers,…

  11. Low Reynolds number kappa-epsilon and empirical transition models for oscillatory pipe flow and heat transfer

    NASA Astrophysics Data System (ADS)

    Bauer, Christopher

    1993-11-01

    Stirling engine heat exchangers are shell-and-tube type with oscillatory flow (zero-mean velocity) for the inner fluid. This heat transfer process involves laminar-transition turbulent flow motions under oscillatory flow conditions. A low Reynolds number kappa-epsilon model, (Lam-Bremhorst form), was utilized in the present study to simulate fluid flow and heat transfer in a circular tube. An empirical transition model was used to activate the low Reynolds number k-e model at the appropriate time within the cycle for a given axial location within the tube. The computational results were compared with experimental flow and heat transfer data for: (1) velocity profiles, (2) kinetic energy of turbulence, (3) skin friction factor, (4) temperature profiles, and (5) wall heat flux. The experimental data were obtained for flow in a tube (38 mm diameter and 60 diameter long), with the maximum Reynolds number based on velocity being Re(sub max) = 11840, a dimensionless frequency (Valensi number) of Va = 80.2, at three axial locations X/D = 16, 30 and 44. The agreement between the computations and the experiment is excellent in the laminar portion of the cycle and good in the turbulent portion. Moreover, the location of transition was predicted accurately. The Low Reynolds Number kappa-epsilon model, together with an empirical transition model, is proposed herein to generate the wall heat flux values at different operating parameters than the experimental conditions. Those computational data can be used for testing the much simpler and less accurate one dimensional models utilized in 1-D Stirling Engine design codes.

  12. A simple derivation of the generalized Beale number

    NASA Astrophysics Data System (ADS)

    Senft, J. R.

    A derivation of the temperature dependence of the Beale number for Stirling engines is presented. The Beale number, a function of the engine power, mean cycle pressure, frequency, and the piston swept volume has been shown to be constant for a wide range of Stirling engines. The number is obtained by considering cycles bounded in the pressure-volume plane by a noncrossing pair of integrable pressure curves between constant volumes. The ideal Stirling cycle is formulated, and an expression is defined for the indicated power output of the ideal Stirling engine, for which the Beale number is demonstrated to be 2. Adjustment to account for losses due to mechanical efficiency, flow, dead space, sinusoidal motion, etc., are discussed.

  13. Discovering modulators of gene expression

    PubMed Central

    Babur, Özgün; Demir, Emek; Gönen, Mithat; Sander, Chris; Dogrusoz, Ugur

    2010-01-01

    Proteins that modulate the activity of transcription factors, often called modulators, play a critical role in creating tissue- and context-specific gene expression responses to the signals cells receive. GEM (Gene Expression Modulation) is a probabilistic framework that predicts modulators, their affected targets and mode of action by combining gene expression profiles, protein–protein interactions and transcription factor–target relationships. Using GEM, we correctly predicted a significant number of androgen receptor modulators and observed that most modulators can both act as co-activators and co-repressors for different target genes. PMID:20466809

  14. Expression studies of catalytic antibodies

    SciTech Connect

    Ulrich, H.D.; Patten, P.A.; Yang, P.L.

    1995-12-05

    We have examined the positive influence of human constant regions on the folding and bacterial expression of active soluble mouse immunoglobulin variable domains derived form a number of catalytic antibodies. Expression yields of eight hybridoma-and myeloma-derived chimeric Fab fragments are compared in both shake flasks and high-density fermentation. In addition the usefulness of this system for the generation of in vivo expression libraries is examined by constructing and expressing combinations of heavy and light chain variable regions that were not selected as a pair during an immune response. A mutagenesis study of one of the recombinant catalytic Fab fragments reveals that single amino acid substitutions can have dramatic effects on the expression yield. This system should be generally applicable to the production of Fab fragments of catalytic and other hybridoma-derived antibodies for crystallographic and structure-function studies. 41 refs., 4 figs., 1 tab.

  15. Improved Flux Formulations for Unsteady Low Mach Number Flows

    DTIC Science & Technology

    2012-07-01

    modeling multi-species flows (as, for example, the combusted exhaust plume from an aircraft engine). One effective way for expressing a general...physical-Mach number and the ratio of specific heats : 2 1 1p p p M M ρ γ ρ γ γ ′  ′ − = +     (5) where 2 2 2 2 minmin max( , , ),1p...the CRUNCH CFD ® code, developed at CRAFT Tech [12]-[15]. The candidate flux formulations for unsteady low Mach number flows will be tested out

  16. Improved Flux Formulations for Unsteady Low Mach Number Flows

    DTIC Science & Technology

    2012-06-01

    flows (as, for example, the combusted exhaust plume from an aircraft engine). One effective way for expressing a general iterative method is through a...pseudo-Mach number to physical-Mach number and the ratio of specific heats : 2 1 1p p p M M (5) where 2 2 2 2 minmin max( , , ),1p i uM M M M (6...performed with the CRUNCH CFD ® code, developed at CRAFT Tech12-15. The candidate flux formulations for unsteady low Mach 8 American Institute of

  17. Number of spin I states of identical particles

    SciTech Connect

    Zhao, Y.M.; Arima, A.

    2005-04-01

    In this article we study the enumeration of number (denoted as D{sub I}) of spin I states for fermions in a single-j shell and bosons with spin l. We show that D{sub I} can be enumerated by the reduction from SU(n+1) to SO(3). New regularities of D{sub I} are discerned. As an example of our new algorithm, we obtained analytical expressions of D{sub I} for four particles.

  18. 14 CFR 47.15 - Registration number.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 14 Aeronautics and Space 1 2013-01-01 2013-01-01 false Registration number. 47.15 Section 47.15... REGISTRATION General § 47.15 Registration number. (a) Number required. An applicant for aircraft registration must place a U.S. registration number (registration mark) on the Aircraft Registration Application,...

  19. 14 CFR 47.15 - Registration number.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 14 Aeronautics and Space 1 2012-01-01 2012-01-01 false Registration number. 47.15 Section 47.15... REGISTRATION General § 47.15 Registration number. (a) Number required. An applicant for aircraft registration must place a U.S. registration number (registration mark) on the Aircraft Registration Application,...

  20. 14 CFR 47.15 - Registration number.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 14 Aeronautics and Space 1 2011-01-01 2011-01-01 false Registration number. 47.15 Section 47.15... REGISTRATION General § 47.15 Registration number. (a) Number required. An applicant for aircraft registration must place a U.S. registration number (registration mark) on the Aircraft Registration Application,...

  1. Orbital elements of numbered minor planets.

    NASA Astrophysics Data System (ADS)

    Williams, G. V.; Marsden, B. G.; Asher, D. J.; Nakano, S.

    2000-06-01

    This list is a continuation of Abstr. 098.023. The numbered minor planets are listed according to their definitive number. Newly numbered objects are indicated by an asterisk. The names of the orbit computers are given behind the respective M.P.C. (or MPO) numbers:

  2. Contextual Effects on Number-Time Interaction

    ERIC Educational Resources Information Center

    Lu, Aitao; Hodges, Bert; Zhang, Jijia; Zhang, John X.

    2009-01-01

    Time perception has long been known to be affected by numerical representations. Recent studies further demonstrate that when participants estimate the duration of Arabic numbers, number magnitude, though task-irrelevant, biases duration judgment to produce underestimation for smaller numbers and overestimation for larger numbers. Such effects…

  3. The Decimal Number System and Young Children

    ERIC Educational Resources Information Center

    Harrison, John

    2006-01-01

    In this article, the author believes that a visual image of the number system is helpful to everyone, especially children, in understanding what is, after all, an abstract idea. The simplest model is the number line, a row of equally spaced numbers, starting at zero. This illustrates the continuous progression of the natural numbers, moving to the…

  4. Avogadro Number and Mole: A Royal Confusion.

    ERIC Educational Resources Information Center

    Emiliani, Cesare

    1991-01-01

    There is a great deal of confusion in physics and chemistry textbooks, dictionaries, manuals, and handbooks about the definition of Avogadro's number and the term "mole." Avogadro's number is defined simply as the number of atomic mass units in one gram. Mole is defined as the mass of one Avogadro number of identical items. (Author/PR)

  5. 7 CFR 46.20 - Lot numbers.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... Receivers § 46.20 Lot numbers. An identifying lot number shall be assigned to each shipment of produce to be sold on consignment or joint account or for the account of another person or firm. A lot number should... lot number shall be assigned to each purchased shipment of similar produce on hand at that time...

  6. 7 CFR 46.20 - Lot numbers.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Receivers § 46.20 Lot numbers. An identifying lot number shall be assigned to each shipment of produce to be sold on consignment or joint account or for the account of another person or firm. A lot number should... lot number shall be assigned to each purchased shipment of similar produce on hand at that time...

  7. 7 CFR 46.20 - Lot numbers.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Receivers § 46.20 Lot numbers. An identifying lot number shall be assigned to each shipment of produce to be sold on consignment or joint account or for the account of another person or firm. A lot number should... lot number shall be assigned to each purchased shipment of similar produce on hand at that time...

  8. 7 CFR 46.20 - Lot numbers.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... Receivers § 46.20 Lot numbers. An identifying lot number shall be assigned to each shipment of produce to be sold on consignment or joint account or for the account of another person or firm. A lot number should... lot number shall be assigned to each purchased shipment of similar produce on hand at that time...

  9. Number of core samples: Mean concentrations and confidence intervals

    SciTech Connect

    Jensen, L.; Cromar, R.D.; Wilmarth, S.R.; Heasler, P.G.

    1995-01-24

    This document provides estimates of how well the mean concentration of analytes are known as a function of the number of core samples, composite samples, and replicate analyses. The estimates are based upon core composite data from nine recently sampled single-shell tanks. The results can be used when determining the number of core samples needed to ``characterize`` the waste from similar single-shell tanks. A standard way of expressing uncertainty in the estimate of a mean is with a 95% confidence interval (CI). The authors investigate how the width of a 95% CI on the mean concentration decreases as the number of observations increase. Specifically, the tables and figures show how the relative half-width (RHW) of a 95% CI decreases as the number of core samples increases. The RHW of a CI is a unit-less measure of uncertainty. The general conclusions are as follows: (1) the RHW decreases dramatically as the number of core samples is increased, the decrease is much smaller when the number of composited samples or the number of replicate analyses are increase; (2) if the mean concentration of an analyte needs to be estimated with a small RHW, then a large number of core samples is required. The estimated number of core samples given in the tables and figures were determined by specifying different sizes of the RHW. Four nominal sizes were examined: 10%, 25%, 50%, and 100% of the observed mean concentration. For a majority of analytes the number of core samples required to achieve an accuracy within 10% of the mean concentration is extremely large. In many cases, however, two or three core samples is sufficient to achieve a RHW of approximately 50 to 100%. Because many of the analytes in the data have small concentrations, this level of accuracy may be satisfactory for some applications.

  10. Elevated satellite cell number in Duchenne muscular dystrophy.

    PubMed

    Kottlors, Michael; Kirschner, Janbernd

    2010-06-01

    The regenerative potential of muscle tissue relies mostly on satellite cells situated between the muscular basal membrane and the sarcolemma. The regeneration of muscle tissue comprises proliferation, the propagation of satellite cells, and their subsequent differentiation with the expression of multiple muscle-specific proteins. However, in Duchenne muscular dystrophy (DMD), regeneration cannot compensate for the loss of muscle tissue. To examine the regenerative potential in DMD, satellite cell nuclei number and markers of differentiation in DMD muscle from various disease states were compared with control muscle. Differentiation of satellite cells is characterized by the helix-loop-helix factor myogenin, which is never co-expressed with Pax7, whereas MyoD1 and Myf5 are co-expressed with Pax7, with Myf5 being present even in muscle of controls. The results indicate that satellite cell number is elevated in DMD in comparison with control muscle, even in advanced stages of dystrophy, suggesting that exhaustion of satellite cells is not the primary cause for failed regeneration. The expression of myogenin is correlated neither with fibrosis nor with age. We suggest variable factors influencing the differentiation of satellite cells in DMD.

  11. "We All Have Something that Has to Do with Tens": Counting School Days, Decomposing Number, and Determining Place Value

    ERIC Educational Resources Information Center

    Goodrow, Anne M.; Kidd, Kasia

    2008-01-01

    This article looks at how the activity of decomposing number--having students write numerical expressions equivalent to the number of days in school--can help students develop understanding of place value. (Contains 3 figures.)

  12. Integrated-Circuit Pseudorandom-Number Generator

    NASA Technical Reports Server (NTRS)

    Steelman, James E.; Beasley, Jeff; Aragon, Michael; Ramirez, Francisco; Summers, Kenneth L.; Knoebel, Arthur

    1992-01-01

    Integrated circuit produces 8-bit pseudorandom numbers from specified probability distribution, at rate of 10 MHz. Use of Boolean logic, circuit implements pseudorandom-number-generating algorithm. Circuit includes eight 12-bit pseudorandom-number generators, outputs are uniformly distributed. 8-bit pseudorandom numbers satisfying specified nonuniform probability distribution are generated by processing uniformly distributed outputs of eight 12-bit pseudorandom-number generators through "pipeline" of D flip-flops, comparators, and memories implementing conditional probabilities on zeros and ones.

  13. Monoallelic Gene Expression in Mammals.

    PubMed

    Chess, Andrew

    2016-11-23

    Monoallelic expression not due to cis-regulatory sequence polymorphism poses an intriguing problem in epigenetics because it requires the unequal treatment of two segments of DNA that are present in the same nucleus and that can indeed have absolutely identical sequences. Here, I focus on a few recent developments in the field of monoallelic expression that are of particular interest and raise interesting questions for future work. One development is regarding analyses of imprinted genes, in which recent work suggests the possibility that intriguing networks of imprinted genes exist and are important for genetic and physiological studies. Another issue that has been raised in recent years by a number of publications is the question of how skewed allelic expression should be for it to be designated as monoallelic expression and, further, what methods are appropriate or inappropriate for analyzing genomic data to examine allele-specific expression. Perhaps the most exciting recent development in mammalian monoallelic expression is a clever and carefully executed analysis of genetic diversity of autosomal genes subject to random monoallelic expression (RMAE), which provides compelling evidence for distinct evolutionary forces acting on random monoallelically expressed genes.

  14. Temperature-dependent particle-number projected moment of inertia

    SciTech Connect

    Allal, N. H.; Fellah, M.; Benhamouda, N.; Oudih, M. R.

    2008-05-15

    Expressions of the parallel and perpendicular temperature-dependent particle-number projected nuclear moment of inertia have been established by means of a discrete projection method. They generalize that of the FTBCS method and are well adapted to numerical computation. The effects of particle-number fluctuations have been numerically studied for some even-even actinide nuclei by using the single-particle energies and eigenstates of a deformed Woods-Saxon mean field. It has been shown that the parallel moment of inertia is practically not modified by the use of the projection method. In contrast, the discrepancy between the projected and FTBCS perpendicular moment of inertia values may reach 5%. Moreover, the particle-number fluctuation effects vary not only as a function of the temperature but also as a function of the deformation for a given temperature. This is not the case for the system energy.

  15. Systematic biases in DNA copy number originate from isolation procedures

    PubMed Central

    2013-01-01

    Background The ability to accurately detect DNA copy number variation in both a sensitive and quantitative manner is important in many research areas. However, genome-wide DNA copy number analyses are complicated by variations in detection signal. Results While GC content has been used to correct for this, here we show that coverage biases are tissue-specific and independent of the detection method as demonstrated by next-generation sequencing and array CGH. Moreover, we show that DNA isolation stringency affects the degree of equimolar coverage and that the observed biases coincide with chromatin characteristics like gene expression, genomic isochores, and replication timing. Conclusion These results indicate that chromatin organization is a main determinant for differential DNA retrieval. These findings are highly relevant for germline and somatic DNA copy number variation analyses. PMID:23618369

  16. On the number of limit cycles for perturbed pendulum equations

    NASA Astrophysics Data System (ADS)

    Gasull, A.; Geyer, A.; Mañosas, F.

    2016-08-01

    We consider perturbed pendulum-like equations on the cylinder of the form x ¨ + sin ⁡ (x) = ε∑s=0mQn,s (x)x˙s where Qn,s are trigonometric polynomials of degree n, and study the number of limit cycles that bifurcate from the periodic orbits of the unperturbed case ε = 0 in terms of m and n. Our first result gives upper bounds on the number of zeros of its associated first order Melnikov function, in both the oscillatory and the rotary regions. These upper bounds are obtained expressing the corresponding Abelian integrals in terms of polynomials and the complete elliptic functions of first and second kind. Some further results give sharp bounds on the number of zeros of these integrals by identifying subfamilies which are shown to be Chebyshev systems.

  17. A simplified Mach number scaling law for helicopter rotor noise

    NASA Technical Reports Server (NTRS)

    Aravamudan, K. S.; Lee, A.; Harris, W. L.

    1978-01-01

    Mach number scaling laws are derived for the rotational and the high-frequency broadband noise from helicopter rotors. The rotational scaling law is obtained directly from the theory of Lowson and Ollerhead (1969) by exploiting the properties of the dominant terms in the expression for the complex Fourier coefficients of sound radiation from a point source. The scaling law for the high-frequency broadband noise is obtained by assuming that the noise sources are acoustically compact and computing the instantaneous pressure due to an element on an airfoil where vortices are shed. Experimental results on the correlation lengths for stationary airfoils are extended to rotating airfoils. On the assumption that the correlation length varies as the boundary layer displacement thickness, it is found that the Mach number scaling law contains a factor of Mach number raised to the exponent 5.8. Both scaling laws were verified by model tests.

  18. The Translated Dowling Polynomials and Numbers

    PubMed Central

    Mangontarum, Mahid M.; Macodi-Ringia, Amila P.; Abdulcarim, Normalah S.

    2014-01-01

    More properties for the translated Whitney numbers of the second kind such as horizontal generating function, explicit formula, and exponential generating function are proposed. Using the translated Whitney numbers of the second kind, we will define the translated Dowling polynomials and numbers. Basic properties such as exponential generating functions and explicit formula for the translated Dowling polynomials and numbers are obtained. Convexity, integral representation, and other interesting identities are also investigated and presented. We show that the properties obtained are generalizations of some of the known results involving the classical Bell polynomials and numbers. Lastly, we established the Hankel transform of the translated Dowling numbers. PMID:27433494

  19. Number Theory in the High School Classroom.

    ERIC Educational Resources Information Center

    Dence, Thomas

    1999-01-01

    Demonstrates some of the usefulness of number theory to students on the high school setting in four areas: Fibonacci numbers, Diophantine equations, continued fractions, and algorithms for computing pi. (ASK)

  20. Measurement Corner Mass, Moles and Avogadro's Number

    ERIC Educational Resources Information Center

    Todd, Robert M.

    1977-01-01

    Discusses and clarifies the confusion arising from the use of the terms "mass,""volume,""matter,""mole," and "Avogadro's number." Suggests three laboratory activities concerning mass, volume, and number of particles in a given volume. (CS)

  1. 47 CFR 95.671 - Serial number.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... SERVICES Technical Regulations Additional Certification Requirements for Cb Transmitters § 95.671 Serial number. The serial number of each CB transmitter must be engraved on the transmitter chassis....

  2. Quantity Cognition: Numbers, Numerosity, Zero and Mathematics.

    PubMed

    Harvey, Ben M

    2016-05-23

    Physical quantities differ from abstract numbers and mathematics, but recent results are revealing the neural representation of both: a new study demonstrates how an absence of quantity is transformed into a representation of zero as a number.

  3. Using Number Theory to Reinforce Elementary Algebra.

    ERIC Educational Resources Information Center

    Covillion, Jane D.

    1995-01-01

    Demonstrates that using the elementary number theory in algebra classes helps students to use acquired algebraic skills as well as helping them to more clearly understand concepts that are presented. Discusses factoring, divisibility rules, and number patterns. (AIM)

  4. Negative numbers are generated in the mind.

    PubMed

    Ganor-Stern, Dana; Tzelgov, Joseph

    2008-01-01

    The goal of the present study was to disentangle two possible representations of negative numbers--the holistic representation, where absolute magnitude is integrated with polarity; and the components representation, where absolute magnitude is stored separately from polarity. Participants' performance was examined in two tasks involving numbers from--100 to 100. In the numerical comparison task, participants had to decide which number of a pair was numerically larger/smaller. In the number line task, participants were presented with a spatial number line on which they had to place a number. The results of both tasks support the components representation of negative numbers. The findings suggest that processing of negative numbers does not involve retrieval of their meaning from memory, but rather the integration of the polarity sign with the digits' magnitudes.

  5. On Anti-Elite Prime Numbers

    NASA Astrophysics Data System (ADS)

    M"Uller, Tom

    2007-09-01

    An odd prime number p is called anti-elite if only finitely many Fermat numbers are quadratic non-residues to p. This concept is the exact opposite to that of elite prime numbers. We study some fundamental properties of anti-elites and show that there are infinitely many of them. A computational search among all the numbers up to 100 billion yielded 84 anti-elite primes.

  6. Generation of a two-center overlap integral over Slater orbitals of higher principal quantum numbers

    NASA Technical Reports Server (NTRS)

    Tai, H.

    1992-01-01

    The expressions for two-center overlap integrals between angular s, p, and d Slater orbitals of arbitrary, higher principal quantum number are explicitly listed. The expressions obtained are extremely compact and independent of the coordinate system. It is further shown that the numerical values of the integrals obtained in this way are free from any numerical instability.

  7. 14 CFR 47.15 - Registration number.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 14 Aeronautics and Space 1 2014-01-01 2014-01-01 false Registration number. 47.15 Section 47.15 Aeronautics and Space FEDERAL AVIATION ADMINISTRATION, DEPARTMENT OF TRANSPORTATION AIRCRAFT AIRCRAFT REGISTRATION General § 47.15 Registration number. (a) Number required. An applicant for aircraft...

  8. 46 CFR Sec. 7 - Job order numbering.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 46 Shipping 8 2013-10-01 2013-10-01 false Job order numbering. Sec. 7 Section 7 Shipping MARITIME... REPAIRS UNDER NATIONAL SHIPPING AUTHORITY MASTER LUMP SUM REPAIR CONTRACT-NSA-LUMPSUMREP Sec. 7 Job order numbering. (a) The NSA-LUMPSUMREP Contract number shall be inserted in every job order and supplemental...

  9. 46 CFR Sec. 7 - Job order numbering.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 46 Shipping 8 2010-10-01 2010-10-01 false Job order numbering. Sec. 7 Section 7 Shipping MARITIME... REPAIRS UNDER NATIONAL SHIPPING AUTHORITY MASTER LUMP SUM REPAIR CONTRACT-NSA-LUMPSUMREP Sec. 7 Job order numbering. (a) The NSA-LUMPSUMREP Contract number shall be inserted in every job order and supplemental...

  10. 46 CFR Sec. 7 - Job order numbering.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 46 Shipping 8 2012-10-01 2012-10-01 false Job order numbering. Sec. 7 Section 7 Shipping MARITIME... REPAIRS UNDER NATIONAL SHIPPING AUTHORITY MASTER LUMP SUM REPAIR CONTRACT-NSA-LUMPSUMREP Sec. 7 Job order numbering. (a) The NSA-LUMPSUMREP Contract number shall be inserted in every job order and supplemental...

  11. 46 CFR Sec. 7 - Job order numbering.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 46 Shipping 8 2011-10-01 2011-10-01 false Job order numbering. Sec. 7 Section 7 Shipping MARITIME... REPAIRS UNDER NATIONAL SHIPPING AUTHORITY MASTER LUMP SUM REPAIR CONTRACT-NSA-LUMPSUMREP Sec. 7 Job order numbering. (a) The NSA-LUMPSUMREP Contract number shall be inserted in every job order and supplemental...

  12. 46 CFR Sec. 7 - Job order numbering.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 46 Shipping 8 2014-10-01 2014-10-01 false Job order numbering. Sec. 7 Section 7 Shipping MARITIME... REPAIRS UNDER NATIONAL SHIPPING AUTHORITY MASTER LUMP SUM REPAIR CONTRACT-NSA-LUMPSUMREP Sec. 7 Job order numbering. (a) The NSA-LUMPSUMREP Contract number shall be inserted in every job order and supplemental...

  13. 7 CFR 29.32 - Identification number.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Identification number. 29.32 Section 29.32 Agriculture Regulations of the Department of Agriculture AGRICULTURAL MARKETING SERVICE (Standards, Inspections, Marketing... INSPECTION Regulations Definitions § 29.32 Identification number. A number or a combination of letters...

  14. Evaluating Number Sense in Workforce Students

    ERIC Educational Resources Information Center

    Steinke, Dorothea A.

    2015-01-01

    Earlier institution-sponsored research revealed that about 20% of students in community college basic math and pre-algebra programs lacked a sense of part-whole relationships with whole numbers. Using the same tool with a group of 86 workforce students, about 75% placed five whole numbers on an empty number line in a way that indicated lack of…

  15. 47 CFR 32.20 - Numbering convention.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 47 Telecommunication 2 2010-10-01 2010-10-01 false Numbering convention. 32.20 Section 32.20 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) COMMON CARRIER SERVICES UNIFORM SYSTEM OF ACCOUNTS FOR TELECOMMUNICATIONS COMPANIES General Instructions § 32.20 Numbering convention. (a) The number...

  16. Developmental Changes in the Whole Number Bias

    ERIC Educational Resources Information Center

    Braithwaite, David W.; Siegler, Robert S.

    2017-01-01

    Many students' knowledge of fractions is adversely affected by whole number bias, the tendency to focus on the separate whole number components (numerator and denominator) of a fraction rather than on the fraction's integrated magnitude (ratio of numerator to denominator). Although whole number bias appears early in the fraction learning process…

  17. 49 CFR 230.47 - Boiler number.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 49 Transportation 4 2011-10-01 2011-10-01 false Boiler number. 230.47 Section 230.47..., DEPARTMENT OF TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Boilers and Appurtenances Steam Gauges § 230.47 Boiler number. (a) Generally. The builder's number of the boiler, if known,...

  18. 49 CFR 230.47 - Boiler number.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 49 Transportation 4 2010-10-01 2010-10-01 false Boiler number. 230.47 Section 230.47..., DEPARTMENT OF TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Boilers and Appurtenances Steam Gauges § 230.47 Boiler number. (a) Generally. The builder's number of the boiler, if known,...

  19. 49 CFR 230.47 - Boiler number.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 49 Transportation 4 2013-10-01 2013-10-01 false Boiler number. 230.47 Section 230.47..., DEPARTMENT OF TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Boilers and Appurtenances Steam Gauges § 230.47 Boiler number. (a) Generally. The builder's number of the boiler, if known,...

  20. 49 CFR 230.47 - Boiler number.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 49 Transportation 4 2012-10-01 2012-10-01 false Boiler number. 230.47 Section 230.47..., DEPARTMENT OF TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Boilers and Appurtenances Steam Gauges § 230.47 Boiler number. (a) Generally. The builder's number of the boiler, if known,...

  1. 49 CFR 230.47 - Boiler number.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 49 Transportation 4 2014-10-01 2014-10-01 false Boiler number. 230.47 Section 230.47..., DEPARTMENT OF TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Boilers and Appurtenances Steam Gauges § 230.47 Boiler number. (a) Generally. The builder's number of the boiler, if known,...

  2. 47 CFR 32.20 - Numbering convention.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ...” (appearing to the left of the first decimal point) indicates the part number. (b) The numbers immediately following to the right of the decimal point indicate, respectively, the section or account. All Part 32 Account numbers contain 4 digits to-the-right-of the decimal point. (c) Cross references to accounts...

  3. 47 CFR 32.20 - Numbering convention.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ...” (appearing to the left of the first decimal point) indicates the part number. (b) The numbers immediately following to the right of the decimal point indicate, respectively, the section or account. All Part 32 Account numbers contain 4 digits to-the-right-of the decimal point. (c) Cross references to accounts...

  4. 47 CFR 32.20 - Numbering convention.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ...” (appearing to the left of the first decimal point) indicates the part number. (b) The numbers immediately following to the right of the decimal point indicate, respectively, the section or account. All Part 32 Account numbers contain 4 digits to-the-right-of the decimal point. (c) Cross references to accounts...

  5. 47 CFR 32.20 - Numbering convention.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ...” (appearing to the left of the first decimal point) indicates the part number. (b) The numbers immediately following to the right of the decimal point indicate, respectively, the section or account. All Part 32 Account numbers contain 4 digits to-the-right-of the decimal point. (c) Cross references to accounts...

  6. Identifying Fractions on a Number Line

    ERIC Educational Resources Information Center

    Wong, Monica

    2013-01-01

    Fractions are generally introduced to students using the part--whole model. Yet the number line is another important representation which can be used to build fraction concepts (Australian Curriculum Assessment and Reporting Authority [ACARA], 2012). Number lines are recognised as key in students' number development not only of fractions, but…

  7. Graphing Powers and Roots of Complex Numbers.

    ERIC Educational Resources Information Center

    Embse, Charles Vonder

    1993-01-01

    Using De Moivre's theorem and a parametric graphing utility, examines powers and roots of complex numbers and allows students to establish connections between the visual and numerical representations of complex numbers. Provides a program to numerically verify the roots of complex numbers. (MDH)

  8. Fascinating Fibonaccis: Mystery and Magic in Numbers.

    ERIC Educational Resources Information Center

    Garland, Trudi Hammel

    This document presents activities and information related to Fibonacci numbers, which are based upon the Golden Ratio, in areas of the arts, sciences, and mathematics. The work is organized into eight chapters: (1) "Origins and Definitions"; (2) "Fibonacci Numbers in Nature"; (3) "Fibonacci Numbers in Art and…

  9. Reading the World through Very Large Numbers

    ERIC Educational Resources Information Center

    Greer, Brian; Mukhopadhyay, Swapna

    2010-01-01

    One original, and continuing, source of interest in large numbers is observation of the natural world, such as trying to count the stars on a clear night or contemplation of the number of grains of sand on the seashore. Indeed, a search of the internet quickly reveals many discussions of the relative numbers of stars and grains of sand. Big…

  10. 27 CFR 24.115 - Registry number.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Registry number. 24.115... OF THE TREASURY LIQUORS WINE Establishment and Operations Application § 24.115 Registry number. Upon approval of the application, the appropriate TTB officer will assign a registry number to the bonded...

  11. 27 CFR 24.115 - Registry number.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2014-04-01 2014-04-01 false Registry number. 24.115... OF THE TREASURY ALCOHOL WINE Establishment and Operations Application § 24.115 Registry number. Upon approval of the application, the appropriate TTB officer will assign a registry number to the bonded...

  12. 27 CFR 24.115 - Registry number.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Registry number. 24.115... OF THE TREASURY LIQUORS WINE Establishment and Operations Application § 24.115 Registry number. Upon approval of the application, the appropriate TTB officer will assign a registry number to the bonded...

  13. 27 CFR 24.115 - Registry number.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false Registry number. 24.115... OF THE TREASURY LIQUORS WINE Establishment and Operations Application § 24.115 Registry number. Upon approval of the application, the appropriate TTB officer will assign a registry number to the bonded...

  14. 27 CFR 24.115 - Registry number.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2013-04-01 2013-04-01 false Registry number. 24.115... OF THE TREASURY ALCOHOL WINE Establishment and Operations Application § 24.115 Registry number. Upon approval of the application, the appropriate TTB officer will assign a registry number to the bonded...

  15. Cycles and Universality in Sunspot Number Fluctuations

    NASA Astrophysics Data System (ADS)

    Gonçalves, R.; Pinto, A. A.; Stollenwerk, N.

    2009-02-01

    We analyze the famous Wolf's sunspot numbers. Surprisingly, we discovered that the distribution of the sunspot number fluctuations for both the ascending and descending phases is close to the universal nonparametric Bramwell-Holdsworth-Pinton (BHP) distribution. Since the BHP probability density function appears in several other physical phenomena, our result reveals a universal feature of the Wolf's sunspot numbers.

  16. 47 CFR 1.1405 - File numbers.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 47 Telecommunication 1 2010-10-01 2010-10-01 false File numbers. 1.1405 Section 1.1405... Procedures § 1.1405 File numbers. Each complaint which appears to be essentially complete under § 1.1404 will be accepted and assigned a file number. Such assignment is for administrative purposes only and...

  17. Insights into Our Understandings of Large Numbers

    ERIC Educational Resources Information Center

    Kastberg, Signe E.; Walker, Vicki

    2008-01-01

    This article explores prospective teachers' understandings of one million to gain insights into the development of adult understanding of large numbers. Themes in the prospective teachers' work included number associated with a quantity of objects, number as an abstraction, and additive and multiplicative approaches. The authors suggest that the…

  18. A GWAS of teat number in pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Number of functional teats is an important trait in commercial swine production. As litter size continues to increase, the number of teats must also increase to supply nutrition to all piglets. The pig displays considerable variation for number of teats; therefore, a genome-wide association (GWA) an...

  19. The Decimal Representation of Real Numbers

    ERIC Educational Resources Information Center

    Kalapodi, A.

    2010-01-01

    The representation of natural numbers in decimal form is an unequivocal procedure while for the representation of real numbers some ambiguities concerning the existence of infinitely many digits equal to 9 still emerge. One of the most frequently confronted misunderstandings is whether 0.999...equals 1 or not, and if not what number does this…

  20. Developing Young Children's Multidigit Number Sense.

    ERIC Educational Resources Information Center

    Diezmann, Carmel M.; English, Lyn D.

    2001-01-01

    This article describes a series of enrichment experiences designed to develop young (ages 5 to 8) gifted children's understanding of large numbers, central to their investigation of space travel. It describes activities designed to teach reading of large numbers and exploring numbers to a thousand and then a million. (Contains ten references.) (DB)