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Sample records for dissociation curve analysis

  1. Dissociative Recombination without a Curve Crossing

    NASA Technical Reports Server (NTRS)

    Guberman, Steven L.

    1994-01-01

    Ab initio calculations show that a curve crossing is not always needed for a high dissociative- recombination cross section. For HeH(+), in which no neutral states cross the ion potential curve, dissociative recombination is driven by the nuclear kinetic-energy operator on adiabatic potential curves. The kinetic-energy derivative operator allows for capture into repulsive curves that are outside of the classical turning points for the nuclear motion. The dominant dissociative route is the C (2)Sigma(+) state leading to H(n = 2) atoms. An analogous mechanism is proposed for the dissociative recombination of H3(+).

  2. Dissociation curves of diatomic molecules: A DC-DFT study

    SciTech Connect

    Sim, Eunji; Kim, Min-Cheol; Burke, Kieron

    2015-12-31

    We investigate dissociation of diatomic molecules using standard density functional theory (DFT) and density-corrected density functional theory (DC-DFT) compared with CCSD(T) results as reference. The results show the difference between the HOMO values of dissociated atomic species often can be used as an indicator whether DFT would predict the correct dissociation limit. DFT predicts incorrect dissociation limits and charge distribution in molecules or molecular ions when the fragments have large HOMO differences, while DC-DFT and CCSD(T) do not. The criteria for large HOMO difference is about 2 ∼ 4 eV.

  3. Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves

    PubMed Central

    Baushke, Samuel W; Stedtfeld, Robert D; Tourlousse, Dieter M; Ahmad, Farhan; Wick, Lukas M; Gulari, Erdogan; Tiedje, James M; Hashsham, Syed A

    2012-01-01

    Non-equilibrium dissociation curves (NEDCs) have the potential to identify non-specific hybridizations on high throughput, diagnostic microarrays. We report a simple method for identification of non-specific signals by using a new parameter that does not rely on comparison of perfect match and mismatch dissociations. The parameter is the ratio of specific dissociation temperature (Td-w) to theoretical melting temperature (Tm) and can be obtained by automated fitting of a four-parameter, sigmoid, empirical equation to the thousands of curves generated in a typical experiment. The curves fit perfect match NEDCs from an initial experiment with an R2 of 0.998±0.006 and root mean square of 108±91 fluorescent units. Receiver operating characteristic curve analysis showed low temperature hybridization signals (20–48 °C) to be as effective as area under the curve as primary data filters. Evaluation of three datasets that target 16S rRNA and functional genes with varying degrees of target sequence similarity showed that filtering out hybridizations with Td-w/Tm < 0.78 greatly reduced false positive results. In conclusion, Td-w/Tm successfully screened many non-specific hybridizations that could not be identified using single temperature signal intensities alone, while the empirical modeling allowed a simplified approach to the high throughput analysis of thousands of NEDCs. PMID:22537822

  4. Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves.

    PubMed

    Baushke, Samuel W; Stedtfeld, Robert D; Tourlousse, Dieter M; Ahmad, Farhan; Wick, Lukas M; Gulari, Erdogan; Tiedje, James M; Hashsham, Syed A

    2012-07-01

    Non-equilibrium dissociation curves (NEDCs) have the potential to identify non-specific hybridizations on high throughput, diagnostic microarrays. We report a simple method for the identification of non-specific signals by using a new parameter that does not rely on comparison of perfect match and mismatch dissociations. The parameter is the ratio of specific dissociation temperature (T(d-w)) to theoretical melting temperature (T(m)) and can be obtained by automated fitting of a four-parameter, sigmoid, empirical equation to the thousands of curves generated in a typical experiment. The curves fit perfect match NEDCs from an initial experiment with an R(2) of 0.998±0.006 and root mean square of 108±91 fluorescent units. Receiver operating characteristic curve analysis showed low temperature hybridization signals (20-48°C) to be as effective as area under the curve as primary data filters. Evaluation of three datasets that target 16S rRNA and functional genes with varying degrees of target sequence similarity showed that filtering out hybridizations with T(d-w)/T(m)<0.78 greatly reduced false positive results. In conclusion, T(d-w)/T(m) successfully screened many non-specific hybridizations that could not be identified using single temperature signal intensities alone, while the empirical modeling allowed a simplified approach to the high throughput analysis of thousands of NEDCs. PMID:22537822

  5. Acid-base titration curves for acids with very small ratios of successive dissociation constants.

    PubMed

    Campbell, B H; Meites, L

    1974-02-01

    The shapes of the potentiometric acid-base titration curves obtained in the neutralizations of polyfunctional acids or bases for which each successive dissociation constant is smaller than the following one are examined. In the region 0 < < 1 (where is the fraction of the equivalent volume of reagent that has been added) the slope of the titration curve decreases as the number j of acidic or basic sites increases. The difference between the pH-values at = 0.75 and = 0.25 has (1 j)log 9 as the lower limit of its maximum value.

  6. Regional dissociated heterochrony in multivariate analysis.

    PubMed

    Mitteroecker, P; Gunz, P; Weber, G W; Bookstein, F L

    2004-12-01

    Heterochrony, the classic framework to study ontogeny and phylogeny, in essence relies on a univariate concept of shape. Though principal component plots of multivariate shape data seem to resemble classical bivariate allometric plots, the language of heterochrony cannot be translated directly into general multivariate methodology. We simulate idealized multivariate ontogenetic trajectories and demonstrate their behavior in principal component plots in shape space and in size-shape space. The concept of "dissociation", which is conventionally regarded as a change in the relationship between shape change and size change, appears to be algebraically the same as regional dissociation - the variation of apparent heterochrony by region. Only if the trajectories of two related species lie along exactly the same path in shape space can the classic terminology of heterochrony apply so that pure dissociation of size change against shape change can be detected. We demonstrate a geometric morphometric approach to these issues using adult and subadult crania of 48 Pan paniscus and 47 P. troglodytes. On each specimen we digitized 47 landmarks and 144 semilandmarks on ridge curves and the external neurocranial surface. The relation between these two species' growth trajectories is too complex for a simple summary in terms of global heterochrony.

  7. The effect of 2,3-diphosphoglycerate on the oxygen dissociation curve of human haemoglobin.

    PubMed Central

    Goodford, P J; Norrington, F E; Paterson, R A; Wootton, R

    1977-01-01

    1. Oxygen dissociation curves for concentrated human haemoglobin solutions (1.6 mmol dm-3 in haem) have been measured by mixing known quantities of oxy- and deoxyhaemoglobin solutions and measuring the resulting partial pressure of oxygen with an oxygen electrode. 2. Observations in the presence of 2,3-diphosphoglycerate support previous conclusions derived from experiments at low haemoglobin concentrations, the validity of which has been questioned. 3. The two affinity state model of Monod, Wyman & Changeux (1965) does not fully describe the actions of 2,3-diphosphoglycerate and a model in which this allosteric effector not only binds preferentially to the T state but also lowers the oxygen affinity of this state gives an improved fit to the data. PMID:604451

  8. Analysis of Exoplanet Light Curves

    NASA Astrophysics Data System (ADS)

    Erdem, A.; Budding, E.; Rhodes, M. D.; Püsküllü, Ç.; Soydugan, F.; Soydugan, E.; Tüysüz, M.; Demircan, O.

    2015-07-01

    We have applied the close binary system analysis package WINFITTER to a variety of exoplanet transiting light curves taken both from the NASA Exoplanet Archive and our own ground-based observations. WINFitter has parameter options for a realistic physical model, including gravity brightening and structural parameters derived from Kopal's applications of the relevant Radau equation, and it includes appropriate tests for determinacy and adequacy of its best fitting parameter sets. We discuss a number of issues related to empirical checking of models for stellar limb darkening, surface maculation, Doppler beaming, microvariability, and transit time variation (TTV) effects. The Radau coefficients used in the light curve modeling, in principle, allow structural models of the component stars to be tested.

  9. Configuration of the Hemoglobin Oxygen Dissociation Curve Demystified: A Basic Mathematical Proof for Medical and Biological Sciences Undergraduates

    ERIC Educational Resources Information Center

    Leow, Melvin Khee-Shing

    2007-01-01

    The oxygen dissociation curve (ODC) of hemoglobin (Hb) has been widely studied and mathematically described for nearly a century. Numerous mathematical models have been designed to predict with ever-increasing accuracy the behavior of oxygen transport by Hb in differing conditions of pH, carbon dioxide, temperature, Hb levels, and…

  10. THE BICARBONATE RESERVE AND THE DISSOCIATION CURVE OF OXYHEMOGLOBIN IN FEBRILE CONDITIONS.

    PubMed

    White, A C

    1925-02-28

    From Fig. 1 it may be seen that the effect of elevated temperature during the pyrexial period upon 1/K and therefore on the dissociation curve of oxyhemoglobin was, on the average, greater than would have been expected from experiments on normal blood in vitro, and greater than would be expected in view of the alkalosis occurring See PDF for Structure during fever. Temperature rise, and excess hydroxyl ion acting in vitro in the opposite directions, seemed to indicate a more stable state of affairs than was found. Apparently other factors have come into play, as, for example, alterations in the proportions and concentrations of the various electrolytes. In pneumonia, for instance, there is a retention of chloride during the febrile period with excessive loss of phosphates. The variations were not due to variations in the hemoglobin molecule itself since from the work of Adair, Barcroft, and Bock (18) hemoglobin must apparently be reckoned as having identical properties in normal individuals of the same species. If Barcroft's (19) hypothesis be right, namely that the C(H) within the corpuscle is higher than that of the plasma, the observed variations of 1/K may not be so surprising. In view of the fact that the hemoglobin inside the corpuscle is enclosed within a semipermeable membrane, the possibility arises of the setting up of membrane equilibria which will protect the respiratory pigment from excessive changes of reaction that may occur in the plasma, and thus the optimum conditions for the carriage of oxygen to the tissues may be maintained. Krogh and Leitch (10) in 1919 also drew attention to the protected situation of hemoglobin inside the corpuscle. In Case 6 it seems as if the alkalosis consequent on the febrile state had gained the upper hand and had extinguished the normal temperature reaction. This is rather confirmed by the fact that clinically the case showed one of the earlier signs of an alkalosis; namely, twitching of the facial muscles. Case 10

  11. Comparison of TcPO II and StO II using the blood oxygen dissociation curve

    NASA Astrophysics Data System (ADS)

    Wright, Leigh P.; Makhratchev, Marina; Yarbrough, Amy; Elmandjra, Mohamed; Mao, Jian-min

    2006-02-01

    It is well known that the relation between the partial pressure of oxygen in blood (PO II) and the hemoglobin oxygen saturation in blood (SO II) is given by the oxyhemoglobin dissociation curve. In this study, we investigate if a similar relation exists in tissue. The PO II in tissue was approximated by the transcutaneous partial pressure of oxygen (TcPO II) measured by TCM3 TM Transcutanous pO II/pCO II Monitoring System; and the SO II in tissue (StO II) was measured by ODISsey TM Tissue Oximeter. The study showed that the TcPO II versus StO II relation is similar to the dissociation curve in blood, as expected.

  12. Unresolved mourning, supernatural beliefs and dissociation: a mediation analysis.

    PubMed

    Thomson, Paula; Jaque, S Victoria

    2014-01-01

    Unresolved mourning is marked by disorganized behavior and states of mind. In this study, we speculated that pathological dissociation would mediate the effects of unresolved mourning on supernatural beliefs. This hypothesis was determined based on findings that indicate an association between higher levels of dissociation, stronger beliefs in the supernatural and unresolved mourning. We examined two groups of participants, one classified as non-unresolved (non-U) (n = 56) and the other as unresolved (n = 26) (U) with respect to past loss/trauma as measured by the Adult Attachment Interview (AAI). Two self-report instruments were administered to measure supernatural beliefs and dissociation. As hypothesized, the multivariate analysis of variance indicated mean differences between the two groups. The unresolved group had greater belief in the supernatural and more pathological dissociative processes. The mediation analysis demonstrated that pathological dissociation fully mediated the effects of unresolved mourning on supernatural beliefs. PMID:24913392

  13. MR Imaging-derived Oxygen-Hemoglobin Dissociation Curves and Fetal-Placental Oxygen-Hemoglobin Affinities.

    PubMed

    Avni, Reut; Golani, Ofra; Akselrod-Ballin, Ayelet; Cohen, Yonni; Biton, Inbal; Garbow, Joel R; Neeman, Michal

    2016-07-01

    Purpose To generate magnetic resonance (MR) imaging-derived, oxygen-hemoglobin dissociation curves and to map fetal-placental oxygen-hemoglobin affinity in pregnant mice noninvasively by combining blood oxygen level-dependent (BOLD) T2* and oxygen-weighted T1 contrast mechanisms under different respiration challenges. Materials and Methods All procedures were approved by the Weizmann Institutional Animal Care and Use Committee. Pregnant mice were analyzed with MR imaging at 9.4 T on embryonic days 14.5 (eight dams and 58 fetuses; imprinting control region ICR strain) and 17.5 (21 dams and 158 fetuses) under respiration challenges ranging from hyperoxia to hypoxia (10 levels of oxygenation, 100%-10%; total imaging time, 100 minutes). A shorter protocol with normoxia to hyperoxia was also performed (five levels of oxygenation, 20%-100%; total imaging time, 60 minutes). Fast spin-echo anatomic images were obtained, followed by sequential acquisition of three-dimensional gradient-echo T2*- and T1-weighted images. Automated registration was applied to align regions of interest of the entire placenta, fetal liver, and maternal liver. Results were compared by using a two-tailed unpaired Student t test. R1 and R2* values were derived for each tissue. MR imaging-based oxygen-hemoglobin dissociation curves were constructed by nonlinear least square fitting of 1 minus the change in R2*divided by R2*at baseline as a function of R1 to a sigmoid-shaped curve. The apparent P50 (oxygen tension at which hemoglobin is 50% saturated) value was derived from the curves, calculated as the R1 scaled value (x) at which the change in R2* divided by R2*at baseline scaled (y) equals 0.5. Results The apparent P50 values were significantly lower in fetal liver than in maternal liver for both gestation stages (day 14.5: 21% ± 5 [P = .04] and day 17.5: 41% ± 7 [P < .0001]). The placenta showed a reduction of 18% ± 4 in mean apparent P50 values from day 14.5 to day 17.5 (P = .003

  14. Analysis of light curve of LP Camelopardalis

    NASA Astrophysics Data System (ADS)

    Prudil, Z.; Skarka, M.; Zejda, M.

    2016-05-01

    We present photometric analysis of the RRab type pulsating star LP Cam. The star was observed at Brno Observatory and Planetarium during nine nights. Measurements were calibrated to the Johnson photometric system. Four captured and thirteen previously published maxima timings allowed us to refine the pulsation period and the zero epoch. The light curve was Fourier decomposed to estimate physical parameters using empirical relations. Our results suggest that LP Cam is a common RR Lyrae star with high, almost solar metallicity.

  15. Incorporating Experience Curves in Appliance Standards Analysis

    SciTech Connect

    Garbesi, Karina; Chan, Peter; Greenblatt, Jeffery; Kantner, Colleen; Lekov, Alex; Meyers, Stephen; Rosenquist, Gregory; Buskirk, Robert Van; Yang, Hung-Chia; Desroches, Louis-Benoit

    2011-10-31

    The technical analyses in support of U.S. energy conservation standards for residential appliances and commercial equipment have typically assumed that manufacturing costs and retail prices remain constant during the projected 30-year analysis period. There is, however, considerable evidence that this assumption does not reflect real market prices. Costs and prices generally fall in relation to cumulative production, a phenomenon known as experience and modeled by a fairly robust empirical experience curve. Using price data from the Bureau of Labor Statistics, and shipment data obtained as part of the standards analysis process, we present U.S. experience curves for room air conditioners, clothes dryers, central air conditioners, furnaces, and refrigerators and freezers. These allow us to develop more representative appliance price projections than the assumption-based approach of constant prices. These experience curves were incorporated into recent energy conservation standards for these products. The impact on the national modeling can be significant, often increasing the net present value of potential standard levels in the analysis. In some cases a previously cost-negative potential standard level demonstrates a benefit when incorporating experience. These results imply that past energy conservation standards analyses may have undervalued the economic benefits of potential standard levels.

  16. NEXT Performance Curve Analysis and Validation

    NASA Technical Reports Server (NTRS)

    Saripalli, Pratik; Cardiff, Eric; Englander, Jacob

    2016-01-01

    Performance curves of the NEXT thruster are highly important in determining the thruster's ability in performing towards mission-specific goals. New performance curves are proposed and examined here. The Evolutionary Mission Trajectory Generator (EMTG) is used to verify variations in mission solutions based on both available thruster curves and the new curves generated. Furthermore, variations in BOL and EOL curves are also examined. Mission design results shown here validate the use of EMTG and the new performance curves.

  17. Light-curve Analysis of Neon Novae

    NASA Astrophysics Data System (ADS)

    Hachisu, Izumi; Kato, Mariko

    2016-01-01

    We analyzed light curves of five neon novae, QU Vul, V351 Pup, V382 Vel, V693 CrA, and V1974 Cyg, and determined their white dwarf (WD) masses and distance moduli on the basis of theoretical light curves composed of free-free and photospheric emission. For QU Vul, we obtained a distance of d ˜ 2.4 kpc, reddening of E(B - V) ˜ 0.55, and WD mass of MWD = 0.82-0.96 {M}⊙ . This suggests that an oxygen-neon WD lost a mass of more than ˜ 0.1 {M}⊙ since its birth. For V351 Pup, we obtained d˜ 5.5 {{kpc}}, E(B-V)˜ 0.45, and {M}{{WD}}=0.98-1.1 {M}⊙ . For V382 Vel, we obtained d˜ 1.6 {{kpc}}, E(B-V)˜ 0.15, and {M}{{WD}}=1.13-1.28 {M}⊙ . For V693 CrA, we obtained d˜ 7.1 {{kpc}}, E(B-V)˜ 0.05, and {M}{{WD}}=1.15-1.25 {M}⊙ . For V1974 Cyg, we obtained d˜ 1.8 {{kpc}}, E(B-V)˜ 0.30, and {M}{{WD}}=0.95-1.1 {M}⊙ . For comparison, we added the carbon-oxygen nova V1668 Cyg to our analysis and obtained d˜ 5.4 {{kpc}}, E(B-V)˜ 0.30, and {M}{{WD}}=0.98-1.1 {M}⊙ . In QU Vul, photospheric emission contributes 0.4-0.8 mag at most to the optical light curve compared with free-free emission only. In V351 Pup and V1974 Cyg, photospheric emission contributes very little (0.2-0.4 mag at most) to the optical light curve. In V382 Vel and V693 CrA, free-free emission dominates the continuum spectra, and photospheric emission does not contribute to the optical magnitudes. We also discuss the maximum magnitude versus rate of decline relation for these novae based on the universal decline law.

  18. On the calculation of complete dissociation curves of closed-shell pseudo-onedimensional systems via the complete active space method of increments

    SciTech Connect

    Fertitta, E.; Paulus, B.; Barcza, G.; Legeza, Ö.

    2015-09-21

    The method of increments (MoI) has been employed using the complete active space formalism in order to calculate the dissociation curve of beryllium ring-shaped clusters Be{sub n} of different sizes. Benchmarks obtained through different quantum chemical methods including the ab initio density matrix renormalization group were used to verify the validity of the MoI truncation which showed a reliable behavior for the whole dissociation curve. Moreover we investigated the size dependence of the correlation energy at different interatomic distances in order to extrapolate the values for the periodic chain and to discuss the transition from a metal-like to an insulator-like behavior of the wave function through quantum chemical considerations.

  19. On the calculation of complete dissociation curves of closed-shell pseudo-onedimensional systems via the complete active space method of increments.

    PubMed

    Fertitta, E; Paulus, B; Barcza, G; Legeza, Ö

    2015-09-21

    The method of increments (MoI) has been employed using the complete active space formalism in order to calculate the dissociation curve of beryllium ring-shaped clusters Be(n) of different sizes. Benchmarks obtained through different quantum chemical methods including the ab initio density matrix renormalization group were used to verify the validity of the MoI truncation which showed a reliable behavior for the whole dissociation curve. Moreover we investigated the size dependence of the correlation energy at different interatomic distances in order to extrapolate the values for the periodic chain and to discuss the transition from a metal-like to an insulator-like behavior of the wave function through quantum chemical considerations. PMID:26395688

  20. Cognitive Processes in Dissociation: An Analysis of Core Theoretical Assumptions

    ERIC Educational Resources Information Center

    Giesbrecht, Timo; Lilienfield, Scott O.; Lynn, Steven Jay; Merckelbach, Harald

    2008-01-01

    Dissociation is typically defined as the lack of normal integration of thoughts, feelings, and experiences into consciousness and memory. The present article critically evaluates the research literature on cognitive processes in dissociation. The authors' review indicates that dissociation is characterized by subtle deficits in neuropsychological…

  1. Mathematics analysis of polymerase chain reaction kinetic curves.

    PubMed

    Sochivko, D G; Fedorov, A A; Varlamov, D A; Kurochkin, V E; Petrov, R V

    2016-01-01

    The paper reviews different approaches to the mathematical analysis of polymerase chain reaction (PCR) kinetic curves. The basic principles of PCR mathematical analysis are presented. Approximation of PCR kinetic curves and PCR efficiency curves by various functions is described. Several PCR models based on chemical kinetics equations are suggested. Decision criteria for an optimal function to describe PCR efficiency are proposed.

  2. Emotion and dissociative seizures: A phenomenological analysis of patients' perspectives.

    PubMed

    Pick, Susannah; Mellers, John D C; Goldstein, Laura H

    2016-03-01

    Quantitative research has indicated that patients with dissociative seizures (DS) show altered responses to emotional stimuli, in addition to considerable emotional distress and dysregulation. The present study sought to further explore emotional processes in this population, to extend previous findings, and to provide a phenomenological insight into patients' perspectives on these issues. Semistructured interviews were carried out with 15 patients with DS, and the principles of interpretative phenomenological analysis (IPA) were adopted in data analysis. Key themes elicited included: i) general emotional functioning; ii) adverse (stressful/traumatic) life experiences; iii) the role of emotions in DS; iv) relating to others; and v) resilience, protective factors, and coping mechanisms. The clinical and theoretical implications of the findings are discussed.

  3. Replication and Analysis of Ebbinghaus’ Forgetting Curve

    PubMed Central

    Murre, Jaap M. J.; Dros, Joeri

    2015-01-01

    We present a successful replication of Ebbinghaus’ classic forgetting curve from 1880 based on the method of savings. One subject spent 70 hours learning lists and relearning them after 20 min, 1 hour, 9 hours, 1 day, 2 days, or 31 days. The results are similar to Ebbinghaus' original data. We analyze the effects of serial position on forgetting and investigate what mathematical equations present a good fit to the Ebbinghaus forgetting curve and its replications. We conclude that the Ebbinghaus forgetting curve has indeed been replicated and that it is not completely smooth but most probably shows a jump upwards starting at the 24 hour data point. PMID:26148023

  4. Recession curve analysis for groundwater levels: case study in Latvia

    NASA Astrophysics Data System (ADS)

    Gailuma, A.; VÄ«tola, I.; Abramenko, K.; Lauva, D.; Vircavs, V.; Veinbergs, A.; Dimanta, Z.

    2012-04-01

    Recession curve analysis is powerful and effective analysis technique in many research areas related with hydrogeology where observations have to be made, such as water filtration and absorption of moisture, irrigation and drainage, planning of hydroelectric power production and chemical leaching (elution of chemical substances) as well as in other areas. The analysis of the surface runoff hydrograph`s recession curves, which is performed to conceive the after-effects of interaction of precipitation and surface runoff, has approved in practice. The same method for analysis of hydrograph`s recession curves can be applied for the observations of the groundwater levels. There are manually prepared hydrograph for analysis of recession curves for observation wells (MG2, BG2 and AG1) in agricultural monitoring sites in Latvia. Within this study from the available monitoring data of groundwater levels were extracted data of declining periods, splitted by month. The drop-down curves were manually (by changing the date) moved together, until to find the best match, thereby obtaining monthly drop-down curves, representing each month separately. Monthly curves were combined and manually joined, for obtaining characterizing drop-down curves of the year for each well. Within the process of decreased recession curve analysis, from the initial curve was cut out upward areas, leaving only the drops of the curve, consequently, the curve is transformed more closely to the groundwater flow, trying to take out the impact of rain or drought periods from the curve. Respectively, the drop-down curve is part of the data, collected with hydrograph, where data with the discharge dominates, without considering impact of precipitation. Using the recession curve analysis theory, ready tool "A Visual Basic Spreadsheet Macro for Recession Curve Analysis" was used for selection of data and logarithmic functions matching (K. Posavec et.al., GROUND WATER 44, no. 5: 764-767, 2006), as well as

  5. State-trace analysis: dissociable processes in a connectionist network?

    PubMed

    Yeates, Fayme; Wills, Andy J; Jones, Fergal W; McLaren, Ian P L

    2015-07-01

    Some argue the common practice of inferring multiple processes or systems from a dissociation is flawed (Dunn, 2003). One proposed solution is state-trace analysis (Bamber, 1979), which involves plotting, across two or more conditions of interest, performance measured by either two dependent variables, or two conditions of the same dependent measure. The resulting analysis is considered to provide evidence that either (a) a single process underlies performance (one function is produced) or (b) there is evidence for more than one process (more than one function is produced). This article reports simulations using the simple recurrent network (SRN; Elman, 1990) in which changes to the learning rate produced state-trace plots with multiple functions. We also report simulations using a single-layer error-correcting network that generate plots with a single function. We argue that the presence of different functions on a state-trace plot does not necessarily support a dual-system account, at least as typically defined (e.g. two separate autonomous systems competing to control responding); it can also indicate variation in a single parameter within theories generally considered to be single-system accounts. PMID:25307272

  6. Full Empirical Potential Curves and Improved Dissociation Energies for the X ^1Σ^+ and a ^1Π States of CH^+

    NASA Astrophysics Data System (ADS)

    Cho, Young-Sang; Le Roy, Robert

    2014-06-01

    CH^+ has been a species of interest since the dawn of molecular astrophysics,and it is an important intermediate in combustion processes. In the domain of `conventional' spectroscopy there have been a number of studies of low v' and v" portions of the A ^1Π-X ^1Σ^+ band system of various isotopologues, and Amano recently reported microwave measurements of the ground-state R(0) lines of 12CH^+, 13CH^+ and 12CD^+. used photodissociation spectroscopy to observe transitions to very high-J' tunneling-predissociation levels (shape resonances) involving v(A)=0-10, for many of which they also measured the photo-fragment kinetic energy release. More recently Hechtfischer et al. used photodissociation spectroscopy of `Feschbach resonance' levels at very high v'(A) and low J' to obtain the first direct measurement of the 12CH^+ dissociation energy with near-spectroscopic accuracy (± 1.1 cm-1). However, to date, all analyses of the data for this system had been performed using traditional band-constant or Dunham-expansion fits to data for the lowest vibrational levels, and there have been no attempts to combine the `conventional' low-v data with the high-J' and high-v' photodissociation data in a single treatment. The present work has addressed this problem by performing a Direct-Potential-Fit (DPF) analysis that obtains full analytic potential energy functions for the X ^1Σ^+ and A ^1Π states of CH^+ that are able to account for all of the available data (on average) within their uncertainties. A.E. Douglas and G. Herzberg, Astrophys. J. 94, 381 (1941). T. Amano, Astrophys. J. Lett. {716}, L1 (2010) H. Helm, P.C. Crosby, M.M. Graff and J.T. Mosley, Phys. Rev. A 25, 304 (1982) U. Hechtfischer and C. J. Williams, M. Lange, J. Linkemann, D. Schwalm, R. Wester, A. Wolf and D. Zajfman, J.Chem.Phys. 117, 8754 (2002). H.S.P. Müller, Astron. Astrophys. 514, L7 (2010)

  7. SS433 Trek 2: light curve analysis.

    NASA Astrophysics Data System (ADS)

    Fukue, J.; Obana, Y.; Okugami, M.

    The authors have calculated theoretical light curves of SS433 during eclipse and precession, using a model in which SS433 consists of a geometrically thick torus around a compact star and a companion star filling the Roche lobe. The favorite combination is that the mass ratio is about 2 (a compact star is a black hole) and the surface temperature of the companion is around 17000K.

  8. PSD analysis of optical QSO light curves

    NASA Astrophysics Data System (ADS)

    Simm, Torben; Salvato, M.; Saglia, R.; Ponti, G.; Lanzuisi, G.; Trakhtenbrot, B.; Nandra, K.; Bender, R.

    2016-08-01

    One of the elementary properties of quasar activity is continuous variability in the UV/optical bands. The power spectral density (PSD) potentially contains information about the underlying processes connected to variability. We applied a novel method based on continuous-time autoregressive moving average (CARMA) models (Kelly et al. 2014) to derive the PSD even for irregularly sampled light curves. Using a sample of ~100 X-ray selected non-local QSOs from the XMM-COSMOS catalog and optical light curves provided by the Pan-STARRS1 MDF survey we find that the PSD resembles a broken power-law with a high-frequency slope significantly steeper than observed in X-ray studies. The PSD normalization is observed to scale inversely with bolometric luminosity and Eddington ratio, whereas there is no correlation between the characteristic bend timescale and black hole mass. We find a weak tendency for QSOs with higher black hole mass to have steeper high-frequency PSD slopes. In an ongoing work we extend these studies employing a sample of ~700 variable broad-line QSOs with high-quality black hole mass estimates and well-sampled light curves from the SDSS-RM project.

  9. Theoretical foundations for environmental Kuznets curve analysis

    NASA Astrophysics Data System (ADS)

    Lantz, Van

    This thesis provides a dynamic theory for analyzing the paths of aggregate output and pollution in a country over time. An infinite horizon, competitive growth-pollution model is explored in order to determine the role that economic scale, production techniques, and pollution regulations play in explaining the inverted U-shaped relationship between output and some forms of pollution (otherwise known as the Environmental Kuznets Curve, or EKC). Results indicate that the output-pollution relationship may follow a strictly increasing, strictly decreasing (but bounded), inverted U-shaped, or some combination of curves. While the 'scale' effect may cause output and pollution to exhibit a monotonic relationship, 'technique' and 'regulation' effects may ultimately cause a de-linking of these two variables. Pollution-minimizing energy regulation policies are also investigated within this framework. It is found that the EKC may be 'flattened' or even eliminated moving from a poorly-regulated economy to one that minimizes pollution. The model is calibrated to the US economy for output (gross national product, GNP) and two pollutants (sulfur dioxide, SO2, and carbon dioxide, CO2) over the period 1900 to 1990. Results indicate that the model replicates the observations quite well. The predominance of 'scale' effects cause aggregate SO2 and CO2 levels to increase with GNP in the early stages of development. Then, in the case of SO 2, 'technique' and 'regulation' effects may be the cause of falling SO2 levels with continued economic growth (establishing the EKC). CO2 continues to monotonically increase as output levels increase over time. The positive relationship may be due to the lack of regulations on this pollutant. If stricter regulation policies were instituted in the two case studies, an improved allocation of resources may result. While GNP may be 2.596 to 20% lower than what has been realized in the US economy (depending on the pollution variable analyzed), individual

  10. Dissociative electron attachment to methyl chloride: A quasi-diatomic potential curve for the fragmentation of the metastable CH3Cl- anion

    NASA Astrophysics Data System (ADS)

    Mach, P.; Urban, J.; Staemmler, V.

    2009-02-01

    Potential energy curves have been calculated for the dissociation of the neutral CH3Cl molecule and its negative ion into CH3 + Cl and CH3 +Cl- , respectively. The neutral molecule and the anion could be treated by means of standard wave function based quantum chemical ab initio methods for C-Cl distances larger than about 2.4 Å, where CH3Cl- is a stable anion. In the present calculation MP3 and CCSD(T) were employed. At shorter C-Cl distances the CH3Cl- anion is only metastable and cannot be treated by such methods. We have applied a stabilization scheme, first proposed by Nestmann and Peyerimhoff, to stabilize the metastable anion by adding extra positive charges to the molecule. By this trick it was possible to generate the resonance energy Eres and width Γ as functions of the C-Cl distance in the resonance regime between 1.5 and 2.5 Å. The calculated values for the threshold energy Ethresh and the exothermicity ΔE0 of the DEA (dissociative electron attachment) process are in very good agreement with experiment; the vertical attachment energy (VAE) is smaller than its experimental counterpart.

  11. Light curve demography via Bayesian functional data analysis

    NASA Astrophysics Data System (ADS)

    Loredo, Thomas; Budavari, Tamas; Hendry, Martin A.; Kowal, Daniel; Ruppert, David

    2015-08-01

    Synoptic time-domain surveys provide astronomers, not simply more data, but a different kind of data: large ensembles of multivariate, irregularly and asynchronously sampled light curves. We describe a statistical framework for light curve demography—optimal accumulation and extraction of information, not only along individual light curves as conventional methods do, but also across large ensembles of related light curves. We build the framework using tools from functional data analysis (FDA), a rapidly growing area of statistics that addresses inference from datasets that sample ensembles of related functions. Our Bayesian FDA framework builds hierarchical models that describe light curve ensembles using multiple levels of randomness: upper levels describe the source population, and lower levels describe the observation process, including measurement errors and selection effects. Schematically, a particular object's light curve is modeled as the sum of a parameterized template component (modeling population-averaged behavior) and a peculiar component (modeling variability across the population), subsequently subjected to an observation model. A functional shrinkage adjustment to individual light curves emerges—an adaptive, functional generalization of the kind of adjustments made for Eddington or Malmquist bias in single-epoch photometric surveys. We are applying the framework to a variety of problems in synoptic time-domain survey astronomy, including optimal detection of weak sources in multi-epoch data, and improved estimation of Cepheid variable star luminosities from detailed demographic modeling of ensembles of Cepheid light curves.

  12. Dissociation behavior of Methane Hydrate presumed by NMR log analysis

    NASA Astrophysics Data System (ADS)

    Kotera, T.

    2015-12-01

    This study has been conducted with the aim of comprehending dissociation behavior of MH. The production test was operated in the Daini-Atsumi knoll in the eastern Nankai Trough, Japan. We corresponded the NMR log data acquired from the three wells, which drilled before the test (AT1-MC) and after the test (AT1-LWD1 and AT1-LWD2). NMR log measures T2 relaxation time, and calculates porosity and permeability. We especially focused on the T2 distribution. It is assumed that MH occupied larger pore space in the sandy sediment because the T2 distribution in the MH bearing layer has no peak in the longer time zone at the AT1-MC. However, T2 peak appeared over 33ms zone at the AT1-LWD1 and AT1-LWD2. This phenomenon is observed in the thin MH bearing layers rather than thick one. On the other hand, nothing T2 peak appeared over the 33ms zone in the thick MH bearing layer, but T2 distribution shifts to longer relaxation time in the short time interval. Hence, it is assumed that the MH was dissociated from the contact faces with the grain. In terms of the thermal conductivity, near the grain-grain contact faces are more dissociable than the MH-grain contact; however both of dissociation zones are essentially MH-grain contact faces. Nothing or few MH was observed in the muddy layer at the coring campaign near these wells. Abovementioned, NMR logging detected various changes on the T2 distribution. It seems to indicate the dissociation of MH. And these data gets into alignment with other log data and monitoring data, which are resistivity and temperature measurement. However, as this logging data acquired from each location, there is possibility that the initial condition was originally distinct. This research was conducted as a part of the MH21 research, and the authors would like to express their sincere appreciation to MH21 and the Ministry of Economy, Trade and Industry for providing the permission to disclose this research.

  13. Cepheid light curve demography via Bayesian functional data analysis

    NASA Astrophysics Data System (ADS)

    Loredo, Thomas J.; Hendry, Martin; Kowal, Daniel; Ruppert, David

    2016-01-01

    Synoptic time-domain surveys provide astronomers, not simply more data, but a different kind of data: large ensembles of multivariate, irregularly and asynchronously sampled light curves. We describe a statistical framework for light curve demography—optimal accumulation and extraction of information, not only along individual light curves as conventional methods do, but also across large ensembles of related light curves. We build the framework using tools from functional data analysis (FDA), a rapidly growing area of statistics that addresses inference from datasets that sample ensembles of related functions. Our Bayesian FDA framework builds hierarchical models that describe light curve ensembles using multiple levels of randomness: upper levels describe the source population, and lower levels describe the observation process, including measurement errors and selection effects. Roughly speaking, a particular object's light curve is modeled as the sum of a parameterized template component (modeling population-averaged behavior) and a peculiar component (modeling variability across the population), subsequently subjected to an observation model. A functional shrinkage adjustment to individual light curves emerges—an adaptive, functional generalization of the kind of adjustments made for Eddington or Malmquist bias in single-epoch photometric surveys. We describe ongoing work applying the framework to improved estimation of Cepheid variable star luminosities via FDA-based refinement and generalization of the Cepheid period-luminosity relation.

  14. Latent profile analysis and principal axis factoring of the DSM-5 dissociative subtype

    PubMed Central

    Frewen, Paul A.; Brown, Matthew F. D.; Steuwe, Carolin; Lanius, Ruth A.

    2015-01-01

    Objective A dissociative subtype has been recognized based on the presence of experiences of depersonalization and derealization in relation to DSM-IV posttraumatic stress disorder (PTSD). However, the dissociative subtype has not been assessed in a community sample in relation to the revised DSM-5 PTSD criteria. Moreover, the 20-item PTSD Checklist for DSM-5 (PCL-5) currently does not assess depersonalization and derealization. Method We therefore evaluated two items for assessing depersonalization and derealization in 557 participants recruited online who endorsed PTSD symptoms of at least moderate severity on the PCL-5. Results A five-class solution identified two PTSD classes who endorsed dissociative experiences associated with either 1) severe or 2) moderate PTSD symptom severity (D-PTSD classes). Those in the severe dissociative class were particularly likely to endorse histories of childhood physical and sexual abuse. A principal axis factor analysis of the symptom list identified six latent variables: 1) Reexperiencing, 2) Emotional Numbing/Anhedonia, 3) Dissociation, 4) Negative Alterations in Cognition & Mood, 5) Avoidance, and 6) Hyperarousal. Conclusions The present results further support the presence of a dissociative subtype within the DSM-5 criteria for PTSD. PMID:25854673

  15. Analysis of agonist dissociation constants as assessed by functional antagonism in guinea pig left atria

    SciTech Connect

    Molenaar, P.; Malta, E.

    1986-04-01

    In electrically driven guinea pig left atria, positive inotropic responses to (-)-isoprenaline and the selective beta 1-adrenoceptor agonist RO363 were obtained in the absence and in the presence of the functional antagonists adenosine, carbachol, gallopamil, nifedipine, and Ro 03-7894. Each of the functional antagonists reduced the maximum response to both agonists and produced nonparallel rightward shifts in the cumulative concentration effect curves. For both agonists, dissociation constants (KA) were calculated using the equation described by Furchgott (1966) for irreversible antagonism. For RO363, which is a partial agonist with high agonist activity, the equations outlined for functional interaction by Mackay (1981) were also employed to calculate KA values. The KA values obtained by each method were compared with the dissociation constants (KD) for the two agonists determined from their ability to displace the radioligand (-)-(/sup 125/I)iodocyanopindolol from beta 1-adrenoceptors in guinea pig left atrial membrane preparations. The estimates of KA varied substantially from KD values. The KD values were taken as more accurate estimates of the true values for the dissociation constants because a high degree of correlation exists between pKD and pD2 values for a number of other beta-adrenoceptor agonists that behave as partial agonists and between pKD and pKB values for a number of beta-adrenoceptor antagonists. Thus, it appears that there are serious limitations in the current theory for using functional antagonism as a means of obtaining agonist dissociation constants.

  16. Distinct dissociation kinetics between ion pairs: Solvent-coordinate free-energy landscape analysis.

    PubMed

    Yonetani, Yoshiteru

    2015-07-28

    Different ion pairs exhibit different dissociation kinetics; however, while the nature of this process is vital for understanding various molecular systems, the underlying mechanism remains unclear. In this study, to examine the origin of different kinetic rate constants for this process, molecular dynamics simulations were conducted for LiCl, NaCl, KCl, and CsCl in water. The results showed substantial differences in dissociation rate constant, following the trend kLiCl < kNaCl < kKCl < kCsCl. Analysis of the free-energy landscape with a solvent reaction coordinate and subsequent rate component analysis showed that the differences in these rate constants arose predominantly from the variation in solvent-state distribution between the ion pairs. The formation of a water-bridging configuration, in which the water molecule binds to an anion and a cation simultaneously, was identified as a key step in this process: water-bridge formation lowers the related dissociation free-energy barrier, thereby increasing the probability of ion-pair dissociation. Consequently, a higher probability of water-bridge formation leads to a higher ion-pair dissociation rate.

  17. Distinct dissociation kinetics between ion pairs: Solvent-coordinate free-energy landscape analysis

    NASA Astrophysics Data System (ADS)

    Yonetani, Yoshiteru

    2015-07-01

    Different ion pairs exhibit different dissociation kinetics; however, while the nature of this process is vital for understanding various molecular systems, the underlying mechanism remains unclear. In this study, to examine the origin of different kinetic rate constants for this process, molecular dynamics simulations were conducted for LiCl, NaCl, KCl, and CsCl in water. The results showed substantial differences in dissociation rate constant, following the trend kLiCl < kNaCl < kKCl < kCsCl. Analysis of the free-energy landscape with a solvent reaction coordinate and subsequent rate component analysis showed that the differences in these rate constants arose predominantly from the variation in solvent-state distribution between the ion pairs. The formation of a water-bridging configuration, in which the water molecule binds to an anion and a cation simultaneously, was identified as a key step in this process: water-bridge formation lowers the related dissociation free-energy barrier, thereby increasing the probability of ion-pair dissociation. Consequently, a higher probability of water-bridge formation leads to a higher ion-pair dissociation rate.

  18. Binding Energy and Dissociation Barrier: Experimental Determination of the Key Parameters of the Potential Energy Curve of Diethyl Ether on Si(001).

    PubMed

    Reutzel, Marcel; Lipponer, Marcus; Dürr, Michael; Höfer, Ulrich

    2015-10-01

    The key parameters of the potential energy curve of organic molecules on semiconductor surfaces, binding energy of the intermediate state and dissociation barrier, were experimentally investigated for the model system of diethyl ether (Et2O) on Si(001). Et2O adsorbs via a datively bonded intermediate from which it converts via ether cleavage into a covalently attached final state. This thermally activated conversion into the final state was followed in real-time by means of optical second-harmonic generation (SHG) at different temperatures and the associated energy barrier ϵa = 0.38 ± 0.05 eV and pre-exponential factor νa = 10(4±1) s(-1) were determined. From molecular beam experiments on the initial sticking probability, the difference between the desorption energy ϵd and ϵa was extracted and thus the binding energy of the intermediate state was determined (0.62 ± 0.08 eV). The results are discussed in terms of general chemical trends as well as with respect to a wider applicability on adsorbate reactions on semiconductor surfaces.

  19. Dissociation of molecular chlorine in a Coulomb explosion: Potential curves, bound states, and deviation from Coulombic behavior for Cln+2 (n=2,3,4,6,8,10)

    NASA Astrophysics Data System (ADS)

    Wright, J. S.; Dilabio, G. A.; Matusek, D. R.; Corkum, P. B.; Ivanov, M. Yu.; Ellert, Ch.; Buenker, R. J.; Alekseyev, A. B.; Hirsch, G.

    1999-06-01

    Highly charged molecular ions are generated in Coulomb explosion experiments involving multielectron dissociative ionization, but little is known about the precise mechanisms involved in their formation. To help improve the understanding of such experiments, potential energy curves are calculated in this paper for diatomic chlorine (Cl2) and its ions Cln+2, where n=1,2,3,4,6,8,10. Bound vibrational states are obtained in three low-lying electronic states for Cl2+2 and one state for Cl3+2. Vertical excitation energies are given for stepwise excitations up to Cl10+2. For all the ions examined there is a significant energy defect (Δ) from the corresponding Coulomb potential, in one case reaching magnitudes of over 20 eV. We analyze the origin of these energy defects in terms of residual chemical bonding, and discuss the contribution of strongly bonding configurations at short internuclear distance. Finally, we present a simple physical model which describes the qualitative behavior of Δ(R,Q).

  20. A kinetic analysis using fractals of cellular analyte-receptor binding and dissociation.

    PubMed

    Sadana, A; Vo-Dinh, T

    2001-02-01

    A fractal analysis is presented for cellular analyte-receptor binding and dissociation kinetics using a biosensor. Data taken from the literature may be modelled, in the case of binding, using a single-fractal analysis or a dual-fractal analysis. The dual-fractal analysis represents a change in the binding mechanism as the reaction progresses on the surface. The predictive relationship developed for the equilibrium constant, K (affinity which is equal to k(d)/k(1or2)), as a function of the analyte concentration is of particular value since it provides a means by which the affinity may be manipulated. This should be of assistance in cell-surface reactions, drug-candidate optimization and for the design of immunodiagnostic devices. Relationships are also presented for the binding and dissociation rate coefficients as a function of their corresponding fractal dimension, D(f) or the degree of heterogeneity that exists on the surface, and the analyte concentration in solution. When analyte-receptor binding or dissociation is involved, an increase in the heterogeneity on the surface (increase in D(f) or D(fd) as the case may be) leads to an increase in the binding and the dissociation rate coefficients. It is suggested that an increase in the degree of heterogeneity on the surface leads to an increase in the turbulence on the surface owing to the irregularities on the surface. This turbulence promotes mixing, minimizes diffusional limitations and leads subsequently to an increase in the binding and the dissociation rate coefficients. The binding and dissociation rate coefficients are rather sensitive to the degree of heterogeneity, D(f) and D(fd), respectively, that exists on the biosensor surface. The heterogeneity on the surface in general affects the binding and dissociation rate coefficients differently. In general, the analyte concentration in solution has a mild affect on the fractal dimension for binding or the fractal dimension for dissociation. This is indicated

  1. Instrumentation for automated acquisition and analysis of TLD glow curves

    NASA Astrophysics Data System (ADS)

    Bostock, I. J.; Kennett, T. J.; Harvey, J. W.

    1991-04-01

    Instrumentation for the automated and complete acquisition of thermoluminescent dosimeter (TLD) data from a Panasonic UD-702E TLD reader is reported. The system that has been developed consists of both hardware and software components and is designed to operate with an IBM-type personal computer. Acquisition of glow curve, timing, and heating data has been integrated with elementary numerical analysis to permit real-time validity and diagnostic assessments to be made. This allows the optimization of critical parameters such as duration of the heating cycles and the time window for the integration of the dosimetry peak. The form of the Li 2B 4O 7:Cu TLD glow curve has been studied and a mathematical representation devised to assist in the implementation of automated analysis. Differences in the shape of the curve can be used to identify dosimetry peaks due to artifacts or to identify failing components. Examples of the use of this system for quality assurance in the TLD monitoring program at McMaster University are presented.

  2. Multi-wavelength analysis of Ellerman Bomb Light Curves

    NASA Astrophysics Data System (ADS)

    Herlender, M.; Berlicki, A.

    We present the results of a multi-wavelength photometric analysis of Ellerman Bomb (EB) observations obtained from the Dutch Open Telescope. In our data we have found 6 EBs located in the super-penumbra of the main spot in the active region NOAA 10781. We present light curves of EB observed in the Hα line centre and wing +0.7 Å, in the Ca II H line centre and wing~+2.35 Å, in the G-band and in the TRACE 1600 Å filter. We have shown that EBs were visible in the G-band and moreover, there was a good correlation between the light curves in the G-band and in the Hα line wings. We also found quasi-periodic oscillations of EBs brightness in the G-band, CaII H line and TRACE 1600 Å filter.

  3. Stress analysis in curved composites due to thermal loading

    NASA Astrophysics Data System (ADS)

    Polk, Jared Cornelius

    Many structures in aircraft, cars, trucks, ships, machines, tools, bridges, and buildings, consist of curved sections. These sections vary from straight line segments that have curvature at either one or both ends, segments with compound curvatures, segments with two mutually perpendicular curvatures or Gaussian curvatures, and segments with a simple curvature. With the advancements made in multi-purpose composites over the past 60 years, composites slowly but steadily have been appearing in these various vehicles, compound structures, and buildings. These composite sections provide added benefits over isotropic, polymeric, and ceramic materials by generally having a higher specific strength, higher specific stiffnesses, longer fatigue life, lower density, possibilities in reduction of life cycle and/or acquisition cost, and greater adaptability to intended function of structure via material composition and geometry. To be able to design and manufacture a safe composite laminate or structure, it is imperative that the stress distributions, their causes, and effects are thoroughly understood in order to successfully accomplish mission objectives and manufacture a safe and reliable composite. The objective of the thesis work is to expand upon the knowledge of simply curved composite structures by exploring and ascertaining all pertinent parameters, phenomenon, and trends in stress variations in curved laminates due to thermal loading. The simply curved composites consist of composites with one radius of curvature throughout the span of the specimen about only one axis. Analytical beam theory, classical lamination theory, and finite element analysis were used to ascertain stress variations in a flat, isotropic beam. An analytical method was developed to ascertain the stress variations in an isotropic, simply curved beam under thermal loading that is under both free-free and fixed-fixed constraint conditions. This is the first such solution to Author's best knowledge

  4. A new approach to the analysis of Mira light curves

    NASA Technical Reports Server (NTRS)

    Mennessier, M. O.; Barthes, D.; Mattei, J. A.

    1990-01-01

    Two different but complementary methods for predicting Mira luminosities are presented. One method is derived from a Fourier analysis, it requires performing deconvolution, and its results are not certain due to the inherent instability of deconvolution problems. The other method is a learning method utilizing artificial intelligence techniques where a light curve is presented as an ordered sequence of pseudocycles, and rules are learned by linking the characteristics of several consecutive pseudocycles to one characteristic of the future cycle. It is observed that agreement between these methods is obtainable when it is possible to eliminate similar false frequencies from the preliminary power spectrum and to improve the degree of confidence in the rules.

  5. Dissociative phenomenology of dissociative identity disorder.

    PubMed

    Dell, Paul F

    2002-01-01

    The goal of this study was to investigate the dissociative phenomenology of dissociative identity disorder (DID). The Multidimensional Inventory of Dissociation (MID) was administered to 34 patients with DID, 23 patients with dissociative disorder not otherwise specified (DDNOS), 52 patients with mixed psychiatric disorders, and 58 normal individuals. DID patients obtained significantly higher scores than the other three groups on 27 dissociation-related variables. DDNOS patients had significantly higher scores than normals and mixed psychiatric patients on 17 and 15 dissociation-related variables, respectively. The findings of the present study are virtually identical to a large body of replicated findings about the dissociative phenomenology of DID. This broad range of dissociation-related phenomena, which routinely occurs in individuals with DID, is largely absent from the DSM-IV-TR account of DID. Factor analysis of the 11 dimensions of dissociation that are measured by the MID extracted only one factor that accounted for 85% of the variance. It was concluded that dissociation is a unifactorial taxon or natural type that has different aspects or epiphenomena (i.e., amnesia, depersonalization, voices, trance, etc.).

  6. Limitation of high-resolution melting curve analysis for genotyping simple sequence repeats in sheep.

    PubMed

    Yang, M; Yue, Y J; Guo, T T; Han, J L; Liu, J B; Guo, J; Sun, X P; Feng, R L; Wu, Y Y; Wang, C F; Wang, L P; Yang, B H

    2014-04-08

    Variation in microsatellite or simple sequence repeat (SSR) loci has, until recently, relied heavily on the use of gel-based methods that can be both time consuming and difficult to genotype. Non gel-based systems are therefore important to increase simplicity and improve turn-around time without compromising assay sensitivity and accuracy. In this report, we assessed the latest of the non-gel-based methods, high-resolution melting (HRM) curve analysis. HRM is a technique that monitors exactly the decreasing fluorescence of intercalating dye in the process of dissociation of double-stranded DNA. The measurement immediately follows polymerase chain reaction in a one-step, closed-tube method. Four SSR loci of different complexity in sheep, namely MAF209, MCM140, CB226, and SRCRSP5, were assessed using the LightScanners System with LC Greens PLUS DNA binding dye. In order to improve the accuracy of genotyping, we applied internal oligo nucleotide calibrators while performing HRM. DNA polymorphisms were previously identified using capillary electrophoresis analysis (CE). The result showed that CE detected more genotypes than HRM in the same loci regardless of the level of polymorphism at the SSR loci. We demonstrate current limitations of the HRM method for the analysis of SSR loci.

  7. ALE meta‐analysis reveals dissociable networks for affective and discriminative aspects of touch

    PubMed Central

    2016-01-01

    Abstract Emotionally‐laden tactile stimulation—such as a caress on the skin or the feel of velvet—may represent a functionally distinct domain of touch, underpinned by specific cortical pathways. In order to determine whether, and to what extent, cortical functional neuroanatomy supports a distinction between affective and discriminative touch, an activation likelihood estimate (ALE) meta‐analysis was performed. This meta‐analysis statistically mapped reported functional magnetic resonance imaging (fMRI) activations from 17 published affective touch studies in which tactile stimulation was associated with positive subjective evaluation (n = 291, 34 experimental contrasts). A separate ALE meta‐analysis mapped regions most likely to be activated by tactile stimulation during detection and discrimination tasks (n = 1,075, 91 experimental contrasts). These meta‐analyses revealed dissociable regions for affective and discriminative touch, with posterior insula (PI) more likely to be activated for affective touch, and primary somatosensory cortices (SI) more likely to be activated for discriminative touch. Secondary somatosensory cortex had a high likelihood of engagement by both affective and discriminative touch. Further, meta‐analytic connectivity (MCAM) analyses investigated network‐level co‐activation likelihoods independent of task or stimulus, across a range of domains and paradigms. Affective‐related PI and discriminative‐related SI regions co‐activated with different networks, implicated in dissociable functions, but sharing somatosensory co‐activations. Taken together, these meta‐analytic findings suggest that affective and discriminative touch are dissociable both on the regional and network levels. However, their degree of shared activation likelihood in somatosensory cortices indicates that this dissociation reflects functional biases within tactile processing networks, rather than functionally and anatomically distinct

  8. Nonlinear Time Series Analysis of White Dwarf Light Curves

    NASA Astrophysics Data System (ADS)

    Jevtic, N.; Zelechoski, S.; Feldman, H.; Peterson, C.; Schweitzer, J.

    2001-12-01

    We use nonlinear time series analysis methods to examine the light intensity curves of white dwarf PG1351+489 obtained by the Whole Earth Telescope (WET). Though these methods were originally introduced to study chaotic systems, when a clear signature of determinism is found for the process generating an observable and it couples the active degrees of freedom of the system, then the notion of phase space provides a framework for exploring the system dynamics of nonlinear systems in general. With a pronounced single frequency, its harmonics and other frequencies of lower amplitude on a broadband background, the PG1351 light curve lends itself to the use of time delay coordinates. Our phase space reconstruction yields a triangular, toroidal three-dimensional shape. This differs from earlier results of a circular toroidal representation. We find a morphological similarity to a magnetic dynamo model developed for fast rotators that yields a union of both results: the circular phase space structure for the ascending portion of the cycle, and the triangular structure for the declining portion. The rise and fall of the dynamo cycle yield both different phase space representations and different correlation dimensions. Since PG1351 is known to have no significant fields, these results may stimulate the observation of light curves of known magnetic white dwarfs for comparison. Using other data obtained by the WET, we compare the phase space reconstruction of DB white dwarf PG1351 with that of GD 358 which has a more complex power spectrum. We also compare these results with those for PG1159. There is some general similarity between the results of the phase space reconstruction for the DB white dwarfs. As expected, the difference between the results for the DB white dwarfs and PG1159 is great.

  9. Thermochemistry and Kinetic Analysis of the Unimolecular Oxiranyl Radical Dissociation Reaction: A Theoretical Study.

    PubMed

    Wang, Heng; Bozzelli, Joseph W

    2016-07-01

    Oxirane structures are important in organic synthesis, and they are important initial products in the oxidation reactions of alkyl radicals. The thermochemical properties (enthalpy of formation, entropy, and heat capacity) for the reaction steps of the unimolecular oxiranyl radical dissociation reaction are determined and compared with the available literature. The overall ring opening and subsequent steps involve four types of reactions: β-scission ring opening, intramolecular hydrogen transfer, β-scission hydrogen elimination, and β-scission methyl radical elimination. The enthalpies of formation of the transition states are determined and evaluated using six popular Density Functional Theory (DFT) calculation methods (B3LYP, B2PLYP, M06, M06-2X, ωB97X, ωB97XD), each combined with three different basis sets. The DFT enthalpy values are compared with five composite calculation methods (G3, G4, CBS-QB3, CBS-APNO, W1U), and by CCSD(T)/aug-cc-pVTZ. Kinetic parameters are determined versus pressure and temperature for the unimolecular dissociation pathways of an oxiranyl radical, which include the chemical activation reactions of the ring-opened oxiranyl radical relative to the ring-opening barrier. Multifrequency quantum Rice Ramsperger Kassel (QRRK) analysis is used to determine k(E) with master equation analysis for falloff. The major overall reaction pathway at lower combustion temperatures is oxiranyl radical dissociation to a methyl radical and carbon monoxide. Oxiranyl radical dissociation to a ketene and hydrogen atom is the key reaction path above 700 K. PMID:26990491

  10. Thermochemistry and Kinetic Analysis of the Unimolecular Oxiranyl Radical Dissociation Reaction: A Theoretical Study.

    PubMed

    Wang, Heng; Bozzelli, Joseph W

    2016-07-01

    Oxirane structures are important in organic synthesis, and they are important initial products in the oxidation reactions of alkyl radicals. The thermochemical properties (enthalpy of formation, entropy, and heat capacity) for the reaction steps of the unimolecular oxiranyl radical dissociation reaction are determined and compared with the available literature. The overall ring opening and subsequent steps involve four types of reactions: β-scission ring opening, intramolecular hydrogen transfer, β-scission hydrogen elimination, and β-scission methyl radical elimination. The enthalpies of formation of the transition states are determined and evaluated using six popular Density Functional Theory (DFT) calculation methods (B3LYP, B2PLYP, M06, M06-2X, ωB97X, ωB97XD), each combined with three different basis sets. The DFT enthalpy values are compared with five composite calculation methods (G3, G4, CBS-QB3, CBS-APNO, W1U), and by CCSD(T)/aug-cc-pVTZ. Kinetic parameters are determined versus pressure and temperature for the unimolecular dissociation pathways of an oxiranyl radical, which include the chemical activation reactions of the ring-opened oxiranyl radical relative to the ring-opening barrier. Multifrequency quantum Rice Ramsperger Kassel (QRRK) analysis is used to determine k(E) with master equation analysis for falloff. The major overall reaction pathway at lower combustion temperatures is oxiranyl radical dissociation to a methyl radical and carbon monoxide. Oxiranyl radical dissociation to a ketene and hydrogen atom is the key reaction path above 700 K.

  11. Evaluating Random Forests for Survival Analysis using Prediction Error Curves.

    PubMed

    Mogensen, Ulla B; Ishwaran, Hemant; Gerds, Thomas A

    2012-09-01

    Prediction error curves are increasingly used to assess and compare predictions in survival analysis. This article surveys the R package pec which provides a set of functions for efficient computation of prediction error curves. The software implements inverse probability of censoring weights to deal with right censored data and several variants of cross-validation to deal with the apparent error problem. In principle, all kinds of prediction models can be assessed, and the package readily supports most traditional regression modeling strategies, like Cox regression or additive hazard regression, as well as state of the art machine learning methods such as random forests, a nonparametric method which provides promising alternatives to traditional strategies in low and high-dimensional settings. We show how the functionality of pec can be extended to yet unsupported prediction models. As an example, we implement support for random forest prediction models based on the R-packages randomSurvivalForest and party. Using data of the Copenhagen Stroke Study we use pec to compare random forests to a Cox regression model derived from stepwise variable selection. Reproducible results on the user level are given for publicly available data from the German breast cancer study group.

  12. WASP-14 b: transit timing analysis of 19 light curves

    NASA Astrophysics Data System (ADS)

    Raetz, St.; Maciejewski, G.; Seeliger, M.; Marka, C.; Fernández, M.; Güver, T.; Göğüş, E.; Nowak, G.; Vaňko, M.; Berndt, A.; Eisenbeiss, T.; Mugrauer, M.; Trepl, L.; Gelszinnis, J.

    2015-08-01

    Although WASP-14 b is one of the most massive and densest exoplanets on a tight and eccentric orbit, it has never been a target of photometric follow-up monitoring or dedicated observing campaigns. We report on new photometric transit observations of WASP-14 b obtained within the framework of Transit Timing Variations @ Young Exoplanet Transit Initiative (TTV@YETI). We collected 19 light curves of 13 individual transit events using six telescopes located in five observatories distributed in Europe and Asia. From light-curve modelling, we determined the planetary, stellar, and geometrical properties of the system and found them in agreement with the values from the discovery paper. A test of the robustness of the transit times revealed that in case of a non-reproducible transit shape the uncertainties may be underestimated even with a wavelet-based error estimation methods. For the timing analysis, we included two publicly available transit times from 2007 and 2009. The long observation period of seven years (2007-2013) allowed us to refine the transit ephemeris. We derived an orbital period 1.2 s longer and 10 times more precise than the one given in the discovery paper. We found no significant periodic signal in the timing-residuals and, hence, no evidence for TTV in the system.

  13. Concentrated photovoltaics system costs and learning curve analysis

    NASA Astrophysics Data System (ADS)

    Haysom, Joan E.; Jafarieh, Omid; Anis, Hanan; Hinzer, Karin

    2013-09-01

    An extensive set of costs in /W for the installed costs of CPV systems has been amassed from a range of public sources, including both individual company prices and market reports. Cost reductions over time are very evident, with current prices for 2012 in the range of 3.0 ± 0.7 /W and a predicted cost of 1.5 /W for 2020. Cost data is combined with deployment volumes in a learning curve analysis, providing a fitted learning rate of either 18.5% or 22.3% depending on the methodology. This learning rate is compared to that of PV modules and PV installed systems, and the influence of soft costs is discussed. Finally, if an annual growth rate of 39% is assumed for deployed volumes, then, using the learning rate of 20%, this would predict the achievement of a cost point of 1.5 /W by 2016.

  14. An item response curves analysis of the Force Concept Inventory

    NASA Astrophysics Data System (ADS)

    Morris, Gary A.; Harshman, Nathan; Branum-Martin, Lee; Mazur, Eric; Mzoughi, Taha; Baker, Stephen D.

    2012-09-01

    Several years ago, we introduced the idea of item response curves (IRC), a simplistic form of item response theory (IRT), to the physics education research community as a way to examine item performance on diagnostic instruments such as the Force Concept Inventory (FCI). We noted that a full-blown analysis using IRT would be a next logical step, which several authors have since taken. In this paper, we show that our simple approach not only yields similar conclusions in the analysis of the performance of items on the FCI to the more sophisticated and complex IRT analyses but also permits additional insights by characterizing both the correct and incorrect answer choices. Our IRC approach can be applied to a variety of multiple-choice assessments but, as applied to a carefully designed instrument such as the FCI, allows us to probe student understanding as a function of ability level through an examination of each answer choice. We imagine that physics teachers could use IRC analysis to identify prominent misconceptions and tailor their instruction to combat those misconceptions, fulfilling the FCI authors' original intentions for its use. Furthermore, the IRC analysis can assist test designers to improve their assessments by identifying nonfunctioning distractors that can be replaced with distractors attractive to students at various ability levels.

  15. The influence of cooperativity on the determination of dissociation constants: examination of the Cheng-Prusoff equation, the Scatchard analysis, the Schild analysis and related power equations.

    PubMed

    Cheng, Hsien C

    2004-07-01

    Use of the Cheng-Prusoff equation for determination of the equilibrium dissociation constant, K(B), is based on an assumption that simple bi-molecular interaction kinetics are strictly followed. Under such circumstances, the slope parameters of the agonist concentration-response curve (K) and that of the inhibition curve (n) are unity. New equations are needed for calculating K(B) when slope parameters (K and n) deviate from unity. In this article, the slope parameters K and n are used as indexes of cooperativity. Thus, the following new equations are derived: (1) For calculation of K(B) from IC(50), the new equation which incorporates both cooperativity indexes is described as K(B) = (IC50)n/(1 + A(K)/K(A)) = (IC50)n/[1 + (A/EC50)K] where A is the concentration of the agonist against which the IC(50) is determined, and K(A) is the apparent equilibrium dissociation constant of the agonist. This new equation is applicable when the cooperativity indexes of K and n are less than, equal to, or greater than unity. This equation reduces to the Cheng-Prusoff equation when the cooperativity indexes K and n are unity. (2) For saturation binding assays, the enhanced Scatchard analysis is described by the equation: B/Fm = -B/K(D) + B(max)/K(D) where B and F are the concentrations of the bound and free ligand, respectively, and m is the cooperativity index of the ligand. A plot of B/F(m) versus B yields a straight line with a negative slope that equals 1/K(D), and an x-axis intercept that equals B(max). When m equals unity, the above analysis reduces to the traditional Scatchard analysis. (3) The importance of the slope parameters (K and n) on Schild analysis is illustrated by the equation: log(x(K) - 1) = log Bn - log K(B), where x is the concentration ratio, and B is the concentration of the antagonist. The modified pA(2) is now defined as the -logarithm of the molar concentration of the antagonist (B), power adjusted with the slope parameter (B(n)), that causes a two

  16. Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays

    NASA Technical Reports Server (NTRS)

    El Fantroussi, Said; Urakawa, Hidetoshi; Bernhard, Anne E.; Kelly, John J.; Noble, Peter A.; Smidt, H.; Yershov, G. M.; Stahl, David A.

    2003-01-01

    Oligonucleotide microarrays were used to profile directly extracted rRNA from environmental microbial populations without PCR amplification. In our initial inspection of two distinct estuarine study sites, the hybridization patterns were reproducible and varied between estuarine sediments of differing salinities. The determination of a thermal dissociation curve (i.e., melting profile) for each probe-target duplex provided information on hybridization specificity, which is essential for confirming adequate discrimination between target and nontarget sequences.

  17. Analysis of selected Kepler Mission planetary light curves

    NASA Astrophysics Data System (ADS)

    Rhodes, M. D.; Budding, E.

    2014-06-01

    We have modified the graphical user interfaced close binary system analysis program CurveFit to the form WinKepler and applied it to 16 representative planetary candidate light curves found in the NASA Exoplanet Archive (NEA) at the Caltech website http://exoplanetarchive.ipac.caltech.edu, with an aim to compare different analytical approaches. WinKepler has parameter options for a realistic physical model, including gravity-brightening and structural parameters derived from the relevant Radau equation. We tested our best-fitting parameter-sets for formal determinacy and adequacy. A primary aim is to compare our parameters with those listed in the NEA. Although there are trends of agreement, small differences in the main parameter values are found in some cases, and there may be some relative bias towards a 90∘ value for the NEA inclinations. These are assessed against realistic error estimates. Photometric variability from causes other than planetary transits affects at least 6 of the data-sets studied; with small pulsational behaviour found in 3 of those. For the false positive KOI 4.01, we found that the eclipses could be modelled by a faint background classical Algol as effectively as by a transiting exoplanet. Our empirical checks of limb-darkening, in the cases of KOI 1.01 and 12.01, revealed that the assigned stellar temperatures are probably incorrect. For KOI 13.01, our empirical mass-ratio differs by about 7 % from that of Mislis and Hodgkin (Mon. Not. R. Astron. Soc. 422:1512, 2012), who neglected structural effects and higher order terms in the tidal distortion. Such detailed parameter evaluation, additional to the usual main geometric ones, provides an additional objective for this work.

  18. Increased precision for analysis of protein-ligand dissociation constants determined from chemical shift titrations.

    PubMed

    Markin, Craig J; Spyracopoulos, Leo

    2012-06-01

    NMR is ideally suited for the analysis of protein-protein and protein ligand interactions with dissociation constants ranging from ~2 μM to ~1 mM, and with kinetics in the fast exchange regime on the NMR timescale. For the determination of dissociation constants (K ( D )) of 1:1 protein-protein or protein-ligand interactions using NMR, the protein and ligand concentrations must necessarily be similar in magnitude to the K ( D ), and nonlinear least squares analysis of chemical shift changes as a function of ligand concentration is employed to determine estimates for the parameters K ( D ) and the maximum chemical shift change (Δδ(max)). During a typical NMR titration, the initial protein concentration, [P (0)], is held nearly constant. For this condition, to determine the most accurate parameters for K ( D ) and Δδ(max) from nonlinear least squares analyses requires initial protein concentrations that are ~0.5 × K ( D ), and a maximum concentration for the ligand, or titrant, of ~10 × [P (0)]. From a practical standpoint, these requirements are often difficult to achieve. Using Monte Carlo simulations, we demonstrate that co-variation of the ligand and protein concentrations during a titration leads to an increase in the precision of the fitted K ( D ) and Δδ(max) values when [P (0)] > K ( D ). Importantly, judicious choice of protein and ligand concentrations for a given NMR titration, combined with nonlinear least squares analyses using two independent variables (ligand and protein concentrations) and two parameters (K ( D ) and Δδ(max)) is a straightforward approach to increasing the accuracy of measured dissociation constants for 1:1 protein-ligand interactions.

  19. Three-Dimensional Postbuckling Analysis of Curved Beams

    NASA Technical Reports Server (NTRS)

    Pai, P. Frank; Lee, Seung-Yoon

    2002-01-01

    Presented here is a method of solving highly flexible curved beam undergoing huge static or quasi-static deformations. A geometrically exact beam theory based on the use of Jaumann stresses and strains and exact coordinate transformation is presented in terms of 17 first-order ordinary differential equations, and a multiple shooting method is used to solve the corresponding nonlinear two-point boundary value problems. The geometrically exact beam theory accounts far large rotations, large displacements, initial curvatures, extensionality, and transverse shear strains. Four examples are used to demonstrate this method, including a rotating clamped-free beam under the influence of gravity and centrifugal forces, an L-frame subjected to an in-plane tip load, a circular arch subjected to a concentrated load, and a clamped-hinged helical spring subjected to an axial displacement. Results show that the combination of the multiple shooting method and the geometrically exact beam theory works very well. Moreover, the obtained numerically exact solutions can be used to verify the accuracy of nonlinear finite element codes for nonlinear analysis of complex structures.

  20. Optical analysis of miniature lenses with curved imaging surfaces.

    PubMed

    Reshidko, Dmitry; Sasian, Jose

    2015-10-01

    Miniature cameras for consumer electronics and mobile phones have been, and continue to be, in fast development. The system level requirements, such as manufacturing cost, packaging, and sensor characteristics, impose unique challenges for optical designers. In this paper, we discuss the potential optical benefits of having a curved image surface rather than a flat one. We show that curved sensor technology allows for optically faster lens solutions. We discuss trade-offs of several relevant characteristics, such as packaging, chief ray angle, image quality, and tolerance sensitivity. A comparison of a benchmark flat field lens, and an evaluation design imaging on a curved surface and working at f/1.6, provides useful specific insights. For a given image quality, departing from a flat imaging surface does not allow significantly reducing the total length of a lens. PMID:26479656

  1. Automatic generation and analysis of solar cell IV curves

    DOEpatents

    Kraft, Steven M.; Jones, Jason C.

    2014-06-03

    A photovoltaic system includes multiple strings of solar panels and a device presenting a DC load to the strings of solar panels. Output currents of the strings of solar panels may be sensed and provided to a computer that generates current-voltage (IV) curves of the strings of solar panels. Output voltages of the string of solar panels may be sensed at the string or at the device presenting the DC load. The DC load may be varied. Output currents of the strings of solar panels responsive to the variation of the DC load are sensed to generate IV curves of the strings of solar panels. IV curves may be compared and analyzed to evaluate performance of and detect problems with a string of solar panels.

  2. Positive and negative symptoms in dissociative identity disorder and schizophrenia: a comparative analysis.

    PubMed

    Ellason, J W; Ross, C A

    1995-04-01

    A substantial number of patients with dissociative identity disorder have had previous diagnoses of schizophrenia, due to the presence of positive symptoms of schizophrenia. The authors investigated the pattern of positive and negative symptoms in patients with dissociative identity disorder, and compared it with norms in schizophrenia. A total of 108 patients with a clinical diagnosis of dissociative identity disorder were administered the Positive and Negative Syndrome Scale. The positive symptom and general psychopathology scores were significantly more severe in the dissociative identity group than the norms for schizophrenia, while the negative symptoms were significantly more severe in schizophrenia. Since patients with dissociative identity disorder report more positive symptoms of schizophrenia than do schizophrenics, while schizophrenics report more negative symptoms, a primary emphasis on positive symptoms may result in false-positive diagnoses of schizophrenia and false-negative diagnoses of dissociative identity disorder.

  3. Mediation Analysis in a Latent Growth Curve Modeling Framework

    ERIC Educational Resources Information Center

    von Soest, Tilmann; Hagtvet, Knut A.

    2011-01-01

    This article presents several longitudinal mediation models in the framework of latent growth curve modeling and provides a detailed account of how such models can be constructed. Logical and statistical challenges that might arise when such analyses are conducted are also discussed. Specifically, we discuss how the initial status (intercept) and…

  4. Multiresolution Analysis of UTAT B-spline Curves

    NASA Astrophysics Data System (ADS)

    Lamnii, A.; Mraoui, H.; Sbibih, D.; Zidna, A.

    2011-09-01

    In this paper, we describe a multiresolution curve representation based on periodic uniform tension algebraic trigonometric (UTAT) spline wavelets of class ??? and order four. Then we determine the decomposition and the reconstruction vectors corresponding to UTAT-spline spaces. Finally, we give some applications in order to illustrate the efficiency of the proposed approach.

  5. Analysis of growth curves of fowl. III. Geese.

    PubMed

    Knízetová, H; Hyánek, J; Veselský, A

    1994-07-01

    1. Growth curves of two lines (S,D) and their reciprocal hybrids (in total,. n = 344) were evaluated by the Richards function. Geese were weighed at 7 d intervals to the ninth week, and then at 92, 154, 192 and 217 d of age. Food and water were supplied ad libitum. 2. The accuracy of curve fit measured by the coefficient of determination (R2) for different genetic groups ranged from 0.9840 to 0.9918. The highest percentage deviations between observed and estimated live weights were recorded at hatching (on average 15.1%), while at the others points of curve they were significantly lower (from 0.6 to 6.8%). 3. The geese are characterised by an early maturing rate. The peak of the absolute growth rate (the inflection point of the curve) occurred at 18.7 to 23.5 d of age (t+). The degree of maturity at a slaughter age of 63 d (u63 = y63/A) ranged from 0.69 to 0.76. Fitting the inflection point at the beginning of the linear growth phase significantly affects the maturing rate (k) and the ratio between the inflection (y+) and the asymptotic (A) weights. The values of these correlated parameters were very low (y+/A = 0.233 to 0.294, k = 0.0281 to 0.0373 ln theta/d). 4. The live weights of geese from 28 d of age and the parameters of the Richards function were significantly higher (P < 0.05, P < 0.01) in th sire line (S) than in the dam line (D). A low negative heterosis was observed at all points of the growth curves (-0.01 to -9.7%). The results indicated the effect of sex-linked growth genes. 5. The phenotypic correlations between parameters of the Richards function within genetic groups are discussed. PMID:7953778

  6. UNSUPERVISED TRANSIENT LIGHT CURVE ANALYSIS VIA HIERARCHICAL BAYESIAN INFERENCE

    SciTech Connect

    Sanders, N. E.; Soderberg, A. M.; Betancourt, M.

    2015-02-10

    Historically, light curve studies of supernovae (SNe) and other transient classes have focused on individual objects with copious and high signal-to-noise observations. In the nascent era of wide field transient searches, objects with detailed observations are decreasing as a fraction of the overall known SN population, and this strategy sacrifices the majority of the information contained in the data about the underlying population of transients. A population level modeling approach, simultaneously fitting all available observations of objects in a transient sub-class of interest, fully mines the data to infer the properties of the population and avoids certain systematic biases. We present a novel hierarchical Bayesian statistical model for population level modeling of transient light curves, and discuss its implementation using an efficient Hamiltonian Monte Carlo technique. As a test case, we apply this model to the Type IIP SN sample from the Pan-STARRS1 Medium Deep Survey, consisting of 18,837 photometric observations of 76 SNe, corresponding to a joint posterior distribution with 9176 parameters under our model. Our hierarchical model fits provide improved constraints on light curve parameters relevant to the physical properties of their progenitor stars relative to modeling individual light curves alone. Moreover, we directly evaluate the probability for occurrence rates of unseen light curve characteristics from the model hyperparameters, addressing observational biases in survey methodology. We view this modeling framework as an unsupervised machine learning technique with the ability to maximize scientific returns from data to be collected by future wide field transient searches like LSST.

  7. Dissociative disorders.

    PubMed

    Kihlstrom, John F

    2005-01-01

    The dissociative disorders, including "psychogenic" or "functional" amnesia, fugue, dissociative identity disorder (DID, also known as multiple personality disorder), and depersonalization disorder, were once classified, along with conversion disorder, as forms of hysteria. The 1970s witnessed an "epidemic" of dissociative disorder, particularly DID, which may have reflected enthusiasm for the diagnosis more than its actual prevalence. Traditionally, the dissociative disorders have been attributed to trauma and other psychological stress, but the existing evidence favoring this hypothesis is plagued by poor methodology. Prospective studies of traumatized individuals reveal no convincing cases of amnesia not attributable to brain insult, injury, or disease. Treatment generally involves recovering and working through ostensibly repressed or dissociated memories of trauma; at present, there are few quantitative or controlled outcome studies. Experimental studies are few in number and have focused largely on state-dependent and implicit memory. Depersonalization disorder may be in line for the next "epidemic" of dissociation.

  8. Analysis of the Permeability and Behaviour of Dissociable Species in Ion-Selective Membranes

    NASA Astrophysics Data System (ADS)

    Verpoorte, Elisabeth M. J.

    1990-08-01

    The main objective of the research presented in this work was to obtain a better understanding of the response properties of a liquid K^+-selective membrane which has found wide application in both ion-selective electrodes (ISE) and ion-sensitive field-effect transistors (ISFET). Of particular interest were the interference phenomena observed at ISE's and ISFET's in the presence of lipophilic anionic species and, in the latter case, neutral acidic species. To facilitate studies of ISFET response, a membrane -coated silicon electrode was proposed as a model for the ISFET gate. Characterization of the impedance response of this electrode was made possible through an equivalent circuit model consisting of simple circuit elements. This allowed utilization of the AC impedance technique to gain information about the response properties of both the membrane itself and the silicon/insulator/membrane structure. In studies examining the interference of benzoic acid at K^+-selective ISFET's, capacitance -voltage and UV spectroscopic measurements verified the hypothesis that this neutral acid was capable of permeating the membrane and undergoing acid-base chemistry at the insulator interface, causing a change in the interfacial charge state. Passivation of the insulator surface was accomplished through interposition of a Ag/AgCl layer between the membrane and the insulator, resulting in elimination of this neutral species interference on electrode potential response. The effect of permeation by benzoic acid and benzoate on the membrane itself was considered, and it was shown that ingress of both these species leads to decreased membrane resistivity being observed, though neither species interferes with ISE response. Studies of the temperature dependence of membrane conductivity indicated that the acid contributed to membrane charge carrier concentration through acid dissociation. A detailed analysis of membrane conductance as a function of concentration enabled the

  9. Dissociative amnesia.

    PubMed

    Staniloiu, Angelica; Markowitsch, Hans J

    2014-08-01

    Dissociative amnesia is one of the most enigmatic and controversial psychiatric disorders. In the past two decades, interest in the understanding of its pathophysiology has surged. In this report, we review new data about the epidemiology, neurobiology, and neuroimaging of dissociative amnesia and show how advances in memory research and neurobiology of dissociation inform proposed pathogenetic models of the disorder. Dissociative amnesia is characterised by functional impairment. Additionally, preliminary data suggest that affected people have an increased and possibly underestimated suicide risk. The prevalence of dissociative amnesia differs substantially across countries and populations. Symptoms and disease course also vary, indicating a possibly heterogeneous disorder. The accompanying clinical features differ across cultural groups. Most dissociative amnesias are retrograde, with memory impairments mainly involving the episodic-autobiographical memory domain. Anterograde dissociative amnesia occurring without significant retrograde memory impairments is rare. Functional neuroimaging studies of dissociative amnesia with prevailing retrograde memory impairments show changes in the network that subserves autobiographical memory. At present, no evidence-based treatments are available for dissociative amnesia and no broad framework exists for its rehabilitation. Further research is needed into its neurobiology, course, treatment options, and strategies to improve differential diagnoses.

  10. The Linkage Between Oxygenation and Subunit Dissociation in Human Hemoglobin

    PubMed Central

    Ackers, Gary K.; Halvorson, Herbert R.

    1974-01-01

    The use of subunit dissociation as a means of probing intersubunit contact energy changes which accompany cooperative ligand binding has been studied for the case of human hemoglobin. An analysis is presented delineating the information that can be obtained from the linkage relationships between ligand binding and subunit dissociation of hemoglobin tetramers into dimers. The analysis defines (a) the variation of the saturation function, Ȳ, with total protein concentration, (b) the variation of the subunit dissociation constant xK2 with ligand concentration (X) and (c) the correlations between changes in dimer-dimer contact energy and the sequential ligand binding steps. Sensitivity of the linkage function has been explored by numerical simulation. It is shown that subunit dissociation may appreciably affect oxygenation curves under usual conditions of measurement and that relying solely on either xK2 or Ȳ may lead to incorrect picutres of the energetics, whereas the combination defines the system much more exactly. PMID:4530985

  11. Analysis of growth curves of fowl. I. Chickens.

    PubMed

    Knízetová, H; Hyánek, J; Kníze, B; Roubícek, J

    1991-12-01

    1. The Richards function was used to describe the growth curves (n = 989) of 9 broiler lines. Chickens were fed ad libitum and body weight was recorded every second week from hatching to 26 weeks of age. 2. The accuracy of curve fit measured by the coefficient of determination (R2) was better for males than for females (0.9986-0.9995 vs 0.9972-0.9988, respectively). 3. The estimation of the asymptotic final weight (A) for different lines enabled the degree of maturity (ut = yt/A) to be determined at any fixed point of the curve. At the age of 7 weeks this had a value of 0.318-0.369 for cockerels and 0.325-0.377 for pullets and represented the slaughter maturity of individual lines. The ratio of inflection/asymptotic weight (y+/A = 0.370-0.388) indicated that in some cases chicken growth can be described approximately by the Gompertz function (y+/A = 0.368). 4. It was found that the age at the inflection point of curves (t+ 48.2-55.7 d for cockerels and t+ = 47.8-52.8 d for pullets) roughly corresponds to the slaughter age of the chickens. 5. The interline differences in the parameters of maturation rate for weight (y+/A, k, t+, u7) are low in comparison with the differences in body weight (A, y+, y7) and absolute growth rate (v, v+). 6. The intragroup phenotypic correlation among growth parameters and the importance of the mathematical models are discussed. PMID:1786568

  12. Thermoluminescence glow curve analysis and CGCD method for erbium doped CaZrO3 phosphor

    NASA Astrophysics Data System (ADS)

    Tiwari, Ratnesh; Chopra, Seema

    2016-05-01

    The manuscript report the synthesis, thermoluminescence study at fixed concentration of Er3+ (1 mol%) doped CaZrO3 phosphor. The phosphors were prepared by modified solid state reaction method. The powder sample was characterized by thermoluminescence (TL) glow curve analysis. In TL glow curve the optimized concentration in 1mol% for UV irradiated sample. The kinetic parameters were calculated by computerized glow curve deconvolution (CGCD) techniaue. Trapping parameters gives the information of dosimetry loss in prepared phosphor and its usability in environmental monitoring and for personal monitoring. CGCD is the advance tool for analysis of complicated TL glow curves.

  13. Curved Thermopiezoelectric Shell Structures Modeled by Finite Element Analysis

    NASA Technical Reports Server (NTRS)

    Lee, Ho-Jun

    2000-01-01

    "Smart" structures composed of piezoelectric materials may significantly improve the performance of aeropropulsion systems through a variety of vibration, noise, and shape-control applications. The development of analytical models for piezoelectric smart structures is an ongoing, in-house activity at the NASA Glenn Research Center at Lewis Field focused toward the experimental characterization of these materials. Research efforts have been directed toward developing analytical models that account for the coupled mechanical, electrical, and thermal response of piezoelectric composite materials. Current work revolves around implementing thermal effects into a curvilinear-shell finite element code. This enhances capabilities to analyze curved structures and to account for coupling effects arising from thermal effects and the curved geometry. The current analytical model implements a unique mixed multi-field laminate theory to improve computational efficiency without sacrificing accuracy. The mechanics can model both the sensory and active behavior of piezoelectric composite shell structures. Finite element equations are being implemented for an eight-node curvilinear shell element, and numerical studies are being conducted to demonstrate capabilities to model the response of curved piezoelectric composite structures (see the figure).

  14. Thermoluminescence glow curve analysis of natural onyx from Turkey.

    PubMed

    Dogan, Tamer; Toktamış, Hüseyin; Yüksel, Mehmet; Topaksu, Mustafa; Yazici, A Necmeddin

    2015-02-01

    In this study, the thermoluminesce (TL) properties of natural onyx were determined after β-irradiation ((90)Sr/(90)Y) at room temperature. The effect of the additive dose and variable heating rate for TL glow peaks of the sample were investigated. Computerized glow curve deconvolution (CGCD) methods were used to determine the number of peaks and kinetic parameters related to the TL glow peaks in natural onyx from Turkey. It was also determined kinetic parameters of onyx by means of the variable heating rate (VHR) method. The sample was exposed to β-irradiation between 2.4 Gy and 2.457 kGy. The CGCD methods showed that the glow curve of sample is the superposition of at least six first order components which were ascribed as P1-P6. The dose responses of some peaks have similar patterns and they follow linearity. The effect of heating rates on the response of dosimetric glow peaks of sample was studied. The maximum TL peak intensities of glow curve are decreasing with increasing heating rate and maximum TL peak intensities at 1 °C/s drops to 20% of the initial value when the sample is read at 6 °C/s.

  15. A Genetic Analysis of Individual Differences in Dissociative Behaviors in Childhood and Adolescence

    ERIC Educational Resources Information Center

    Becker-Blease, Kathryn A.; Deater-Deckard, Kirby; Eley, Thalia; Freyd, Jennifer J.; Stevenson, Jim; Plomin, Robert

    2004-01-01

    Background: Dissociation--a pattern of general disruption in memory and consciousness--has been found to be an important cognitive component of children's and adults' coping with severe trauma. Dissociative experiences include amnesia, identity disturbance, age regression, difficulty with concentration, and trance states. Stable individual…

  16. Method and apparatus for enhanced sequencing of complex molecules using surface-induced dissociation in conjunction with mass spectrometric analysis

    DOEpatents

    Laskin, Julia [Richland, WA; Futrell, Jean H [Richland, WA

    2008-04-29

    The invention relates to a method and apparatus for enhanced sequencing of complex molecules using surface-induced dissociation (SID) in conjunction with mass spectrometric analysis. Results demonstrate formation of a wide distribution of structure-specific fragments having wide sequence coverage useful for sequencing and identifying the complex molecules.

  17. Paleomagnetic analysis of curved thrust belts reproduced by physical models

    NASA Astrophysics Data System (ADS)

    Costa, Elisabetta; Speranza, Fabio

    2003-12-01

    This paper presents a new methodology for studying the evolution of curved mountain belts by means of paleomagnetic analyses performed on analogue models. Eleven models were designed aimed at reproducing various tectonic settings in thin-skinned tectonics. Our models analyze in particular those features reported in the literature as possible causes for peculiar rotational patterns in the outermost as well as in the more internal fronts. In all the models the sedimentary cover was reproduced by frictional low-cohesion materials (sand and glass micro-beads), which detached either on frictional or on viscous layers. These latter were reproduced in the models by silicone. The sand forming the models has been previously mixed with magnetite-dominated powder. Before deformation, the models were magnetized by means of two permanent magnets generating within each model a quasi-linear magnetic field of intensity variable between 20 and 100 mT. After deformation, the models were cut into closely spaced vertical sections and sampled by means of 1×1-cm Plexiglas cylinders at several locations along curved fronts. Care was taken to collect paleomagnetic samples only within virtually undeformed thrust sheets, avoiding zones affected by pervasive shear. Afterwards, the natural remanent magnetization of these samples was measured, and alternating field demagnetization was used to isolate the principal components. The characteristic components of magnetization isolated were used to estimate the vertical-axis rotations occurring during model deformation. We find that indenters pushing into deforming belts from behind form non-rotational curved outer fronts. The more internal fronts show oroclinal-type rotations of a smaller magnitude than that expected for a perfect orocline. Lateral symmetrical obstacles in the foreland colliding with forward propagating belts produce non-rotational outer curved fronts as well, whereas in between and inside the obstacles a perfect orocline forms

  18. Dissociation and recombination of D{sub 2} on Cu(111): Ab initio molecular dynamics calculations and improved analysis of desorption experiments

    SciTech Connect

    Nattino, Francesco Genova, Alessandro; Guijt, Marieke; Kroes, Geert-Jan; Muzas, Alberto S.; Díaz, Cristina; Auerbach, Daniel J.

    2014-09-28

    Obtaining quantitative agreement between theory and experiment for dissociative adsorption of hydrogen on and associative desorption of hydrogen from Cu(111) remains challenging. Particularly troubling is the fact that theory gives values for the high energy limit to the dissociative adsorption probability that is as much as two times larger than experiment. In the present work we approach this discrepancy in three ways. First, we carry out a new analysis of the raw experimental data for D{sub 2} associatively desorbing from Cu(111). We also perform new ab initio molecular dynamics (AIMD) calculations that include effects of surface atom motion. Finally, we simulate time-of-flight (TOF) spectra from the theoretical reaction probability curves and we directly compare them to the raw experimental data. The results show that the use of more flexible functional forms for fitting the raw TOF spectra gives fits that are in slightly better agreement with the raw data and in considerably better agreement with theory, even though the theoretical reaction probabilities still achieve higher values at high energies. The mean absolute error (MAE) for the energy E{sub 0} at which the reaction probability equals half the experimental saturation value is now lower than 1 kcal/mol, the limit that defines chemical accuracy, while a MAE of 1.5 kcal/mol was previously obtained. The new AIMD results are only slightly different from the previous static surface results and in slightly better agreement with experiment.

  19. Analysis of growth curves of fowl. II. Ducks.

    PubMed

    Knízetová, H; Hyánek, J; Kníze, B; Procházková, H

    1991-12-01

    1. Growth curves of nine selected lines and one random-bred control population (in total, n = 1070) were evaluated by the Richards function. The ducks were weighed at 7-d intervals and, after the tenth week, every second week (up to 18 weeks). Food and water were supplied ad libitum. 2. The predicted curves closely fitted the weight data points (R2 = 0.9991-0.9997). 3. The ducks are characterized by early maturity rate. The peak of the absolute growth rate (the inflection point of the curve) occurred at 24.1-27.6 d of age (t+). A higher ratio of the inflection to the asymptotic weights (y+/A = 0.380-0.424) was found in comparison to those from the Gompertz-type function of growth (y+/A = 0.368). 4. In the selected lines the degree of maturity at a slaughter age of 7 weeks (u7 = y7/A) ranged from 0.784 to 0.835 for males and from 0.819 to 0.889 for females. 5. Ducks within the non-selected control line had a significantly lower maturing rate than the selected lines. 6. Sexual dimorphism was recorded for all growth parameters analysed. Females have faster maturation rate than males (higher values of y+/A, u7, k and a shorter auto-acceleration phase of growth). 7. High interline differences were found for body weight (A, y+, y7) and for absolute growth rate (v, v+) and smaller ones for parameters of the maturation rate (y+/A, u7, k and t+). 8. The intragroup phenotype correlation between growth parameters and the use of weight data only up to 7 weeks of age for the estimation of parameters of the Richards function are discussed. PMID:1786569

  20. Transit Light Curves with Finite Integration Time: Fisher Information Analysis

    NASA Astrophysics Data System (ADS)

    Price, Ellen M.; Rogers, Leslie A.

    2014-10-01

    Kepler has revolutionized the study of transiting planets with its unprecedented photometric precision on more than 150,000 target stars. Most of the transiting planet candidates detected by Kepler have been observed as long-cadence targets with 30 minute integration times, and the upcoming Transiting Exoplanet Survey Satellite will record full frame images with a similar integration time. Integrations of 30 minutes affect the transit shape, particularly for small planets and in cases of low signal to noise. Using the Fisher information matrix technique, we derive analytic approximations for the variances and covariances on the transit parameters obtained from fitting light curve photometry collected with a finite integration time. We find that binning the light curve can significantly increase the uncertainties and covariances on the inferred parameters when comparing scenarios with constant total signal to noise (constant total integration time in the absence of read noise). Uncertainties on the transit ingress/egress time increase by a factor of 34 for Earth-size planets and 3.4 for Jupiter-size planets around Sun-like stars for integration times of 30 minutes compared to instantaneously sampled light curves. Similarly, uncertainties on the mid-transit time for Earth and Jupiter-size planets increase by factors of 3.9 and 1.4. Uncertainties on the transit depth are largely unaffected by finite integration times. While correlations among the transit depth, ingress duration, and transit duration all increase in magnitude with longer integration times, the mid-transit time remains uncorrelated with the other parameters. We provide code in Python and Mathematica for predicting the variances and covariances at www.its.caltech.edu/~eprice.

  1. Transit light curves with finite integration time: Fisher information analysis

    SciTech Connect

    Price, Ellen M.; Rogers, Leslie A.

    2014-10-10

    Kepler has revolutionized the study of transiting planets with its unprecedented photometric precision on more than 150,000 target stars. Most of the transiting planet candidates detected by Kepler have been observed as long-cadence targets with 30 minute integration times, and the upcoming Transiting Exoplanet Survey Satellite will record full frame images with a similar integration time. Integrations of 30 minutes affect the transit shape, particularly for small planets and in cases of low signal to noise. Using the Fisher information matrix technique, we derive analytic approximations for the variances and covariances on the transit parameters obtained from fitting light curve photometry collected with a finite integration time. We find that binning the light curve can significantly increase the uncertainties and covariances on the inferred parameters when comparing scenarios with constant total signal to noise (constant total integration time in the absence of read noise). Uncertainties on the transit ingress/egress time increase by a factor of 34 for Earth-size planets and 3.4 for Jupiter-size planets around Sun-like stars for integration times of 30 minutes compared to instantaneously sampled light curves. Similarly, uncertainties on the mid-transit time for Earth and Jupiter-size planets increase by factors of 3.9 and 1.4. Uncertainties on the transit depth are largely unaffected by finite integration times. While correlations among the transit depth, ingress duration, and transit duration all increase in magnitude with longer integration times, the mid-transit time remains uncorrelated with the other parameters. We provide code in Python and Mathematica for predicting the variances and covariances at www.its.caltech.edu/∼eprice.

  2. The first light curve analysis of eclipsing binary NR Cam

    NASA Astrophysics Data System (ADS)

    Tavakkoli, F.; Hasanzadeh, A.; Poro, A.

    2015-05-01

    New observations of the eclipsing binary system NR Cam were carried out using a CCD in B, V, and R filters and new times of light minimum and new ephemeris were obtained. The B, V, and R light curves were analyzed using both the Binary Maker 3.0 and PHOEBE 0.31 programs to determine some geometrical and physical parameters of the system. These results show that NR Cam is an overcontact binary and that both components are Main Sequence stars. The O'Connell effect on NR Cam was studied and some variations in spot parameters were obtained over the different years.

  3. Vibration Analysis of Composite Rectangular Plates Reinforced along Curved Lines

    NASA Astrophysics Data System (ADS)

    Honda, Shinya; Oonishi, Yoshimasa; Narita, Yoshihiro; Sasaki, Katsuhiko

    In the past few decades, composite materials composed of straight fibers and polymer matrix have gained their status as the most promising material for light-weight structures. Technical merit of the composites as tailored material also provided practical advantages in the optimum design process. Recently, it is reported that the fabrication machine has been developed to make curved fibers embedded in the matrix material. Based on such technical advancement, this paper proposes an analytical method to study vibration of composite rectangular plates reinforced along curved lines. The approach is based on the Ritz method where variable fiber direction can be accommodated. For this purpose, the fibers continuously changing their direction are formulated as the variable bending stiffness in the total potential energy. A frequency equation is derived by the Ritz minimizing process, and frequency parameters are calculated as the eigenvlaues in the eigenvalue problem. In numerical results, the accuracy of the method is presented by comparing present results with FEM results. The advantages of present plate are confirmed by comparing natural frequencies and mode shapes with those of conventional composite and isotropic plates, and the effectiveness of the new solution to the most recent problem is demonstrated.

  4. Electrochemical and theoretical analysis of the reactivity of shikonin derivatives: dissociative electron transfer in esterified compounds.

    PubMed

    Armendáriz-Vidales, Georgina; Frontana, Carlos

    2014-09-01

    An electrochemical and theoretical analysis of a series of shikonin derivatives in aprotic media is presented. Results showed that the first electrochemical reduction signal is a reversible monoelectronic transfer, generating a stable semiquinone intermediate; the corresponding E(I)⁰ values were correlated with calculated values of electroaccepting power (ω(+)) and adiabatic electron affinities (A(Ad)), obtained with BH and HLYP/6-311++G(2d,2p) and considering the solvent effect, revealing the influence of intramolecular hydrogen bonding and the substituting group at position C-2 in the experimental reduction potential. For the second reduction step, esterified compounds isobutyryl and isovalerylshikonin presented a coupled chemical reaction following dianion formation. Analysis of the variation of the dimensionless cathodic peak potential values (ξ(p)) as a function of the scan rate (v) functions and complementary experiments in benzonitrile suggested that this process follows a dissociative electron transfer, in which the rate of heterogeneous electron transfer is slow (~0.2 cm s(-1)), and the rate constant of the chemical process is at least 10(5) larger. PMID:25007856

  5. Formulation and numerical analysis of diatomic molecular dissociation using Boltzmann kinetic equation

    NASA Astrophysics Data System (ADS)

    Yano, Ryosuke; Suzuki, Kojiro; Kuroda, Hisayasu

    2007-01-01

    The direct description of chemical reactions by the Boltzmann equation still involves some difficulties in the kinetic theory. In this paper, we describe diatomic molecular dissociation due to transitions of vibrational quantum states resulting from inelastic collisions. These can be described by the Wang Chang-Uhlenbeck (WCU) equation. To avoid direct evaluation of the strong nonlinear collision kernel of the WCU equation, we used a kinetic equation. For accurate description of the dissociation process, we describe improvements we made to the conventional inelastic collision model (the so-called Morse model). Combining this inelastic collision model with the gas mixture model by Oguchi, we formulated a model for representing diatomic molecular dissociations. We validated this model by simulating a hypersonic shock layer with diatomic molecular dissociation.

  6. Three dimensions of dissociative amnesia.

    PubMed

    Dell, Paul F

    2013-01-01

    Principal axis factor analysis with promax rotation extracted 3 factors from the 42 memory and amnesia items of the Multidimensional Inventory of Dissociation (MID) database (N = 2,569): Discovering Dissociated Actions, Lapses of Recent Memory and Skills, and Gaps in Remote Memory. The 3 factors' shared variance ranged from 36% to 64%. Construed as scales, the 3 factor scales had Cronbach's alpha coefficients of .96, .94, and .93, respectively. The scales correlated strongly with mean Dissociative Experiences Scale scores, mean MID scores, and total scores on the Structured Clinical Interview for DSM-IV Dissociative Disorders-Revised (SCID-D-R). What is interesting is that the 3 amnesia factors exhibited a range of correlations with SCID-D-R Amnesia scores (.52, .63, and .70, respectively), suggesting that the SCID-D-R Amnesia score emphasizes gaps in remote memory over amnesias related to dissociative identity disorder. The 3 amnesia factor scales exhibited a clinically meaningful pattern of significant differences among dissociative identity disorder, dissociative disorder not otherwise specified-1, dissociative amnesia, depersonalization disorder, and nonclinical participants. The 3 amnesia factors may have greater clinical utility for frontline clinicians than (a) amnesia as discussed in the context of the Diagnostic and Statistical Manual of Mental Disorders, Fourth Edition, nosology of the dissociative disorders or (b) P. Janet's (1893/1977 ) 4-fold classification of dissociative amnesia. The author recommends systematic study of the phenomenological differences within specific dissociative symptoms and their differential relationship to specific dissociative disorders. PMID:23282045

  7. Three dimensions of dissociative amnesia.

    PubMed

    Dell, Paul F

    2013-01-01

    Principal axis factor analysis with promax rotation extracted 3 factors from the 42 memory and amnesia items of the Multidimensional Inventory of Dissociation (MID) database (N = 2,569): Discovering Dissociated Actions, Lapses of Recent Memory and Skills, and Gaps in Remote Memory. The 3 factors' shared variance ranged from 36% to 64%. Construed as scales, the 3 factor scales had Cronbach's alpha coefficients of .96, .94, and .93, respectively. The scales correlated strongly with mean Dissociative Experiences Scale scores, mean MID scores, and total scores on the Structured Clinical Interview for DSM-IV Dissociative Disorders-Revised (SCID-D-R). What is interesting is that the 3 amnesia factors exhibited a range of correlations with SCID-D-R Amnesia scores (.52, .63, and .70, respectively), suggesting that the SCID-D-R Amnesia score emphasizes gaps in remote memory over amnesias related to dissociative identity disorder. The 3 amnesia factor scales exhibited a clinically meaningful pattern of significant differences among dissociative identity disorder, dissociative disorder not otherwise specified-1, dissociative amnesia, depersonalization disorder, and nonclinical participants. The 3 amnesia factors may have greater clinical utility for frontline clinicians than (a) amnesia as discussed in the context of the Diagnostic and Statistical Manual of Mental Disorders, Fourth Edition, nosology of the dissociative disorders or (b) P. Janet's (1893/1977 ) 4-fold classification of dissociative amnesia. The author recommends systematic study of the phenomenological differences within specific dissociative symptoms and their differential relationship to specific dissociative disorders.

  8. Infrared spectrum analysis of the dissociated states of simple amino acids.

    PubMed

    Sebben, Damien; Pendleton, Phillip

    2014-11-11

    In this work, we present detailed analyses of the dissociation of dilute aqueous solutions of glycine and of lysine over the range 1Analysis of the deconvoluted peak areas due to CO and COO- at pH ranges<4.5 and those due to NH2 and NH3+ for pH>8 resulted in consistent pKa values for the amino acids.

  9. Gender differences in responses to moral dilemmas: a process dissociation analysis.

    PubMed

    Friesdorf, Rebecca; Conway, Paul; Gawronski, Bertram

    2015-05-01

    The principle of deontology states that the morality of an action depends on its consistency with moral norms; the principle of utilitarianism implies that the morality of an action depends on its consequences. Previous research suggests that deontological judgments are shaped by affective processes, whereas utilitarian judgments are guided by cognitive processes. The current research used process dissociation (PD) to independently assess deontological and utilitarian inclinations in women and men. A meta-analytic re-analysis of 40 studies with 6,100 participants indicated that men showed a stronger preference for utilitarian over deontological judgments than women when the two principles implied conflicting decisions (d = 0.52). PD further revealed that women exhibited stronger deontological inclinations than men (d = 0.57), while men exhibited only slightly stronger utilitarian inclinations than women (d = 0.10). The findings suggest that gender differences in moral dilemma judgments are due to differences in affective responses to harm rather than cognitive evaluations of outcomes.

  10. Gender differences in responses to moral dilemmas: a process dissociation analysis.

    PubMed

    Friesdorf, Rebecca; Conway, Paul; Gawronski, Bertram

    2015-05-01

    The principle of deontology states that the morality of an action depends on its consistency with moral norms; the principle of utilitarianism implies that the morality of an action depends on its consequences. Previous research suggests that deontological judgments are shaped by affective processes, whereas utilitarian judgments are guided by cognitive processes. The current research used process dissociation (PD) to independently assess deontological and utilitarian inclinations in women and men. A meta-analytic re-analysis of 40 studies with 6,100 participants indicated that men showed a stronger preference for utilitarian over deontological judgments than women when the two principles implied conflicting decisions (d = 0.52). PD further revealed that women exhibited stronger deontological inclinations than men (d = 0.57), while men exhibited only slightly stronger utilitarian inclinations than women (d = 0.10). The findings suggest that gender differences in moral dilemma judgments are due to differences in affective responses to harm rather than cognitive evaluations of outcomes. PMID:25840987

  11. Monte Carlo analysis of dissociation and recombination behind strong shock waves in nitrogen

    NASA Technical Reports Server (NTRS)

    Boyd, I. D.

    1991-01-01

    Computations are presented for the relaxation zone behind strong, 1D shock waves in nitrogen. The analysis is performed with the direct simulation Monte Carlo method (DSMC). The DSMC code is vectorized for efficient use on a supercomputer. The code simulates translational, rotational and vibrational energy exchange and dissociative and recombinative chemical reactions. A model is proposed for the treatment of three body-recombination collisions in the DSMC technique which usually simulates binary collision events. The model improves previous models because it can be employed with a large range of chemical-rate data, does not introduce into the flow field troublesome pairs of atoms which may recombine upon further collision (pseudoparticles) and is compatible with the vectorized code. The computational results are compared with existing experimental data. It is shown that the derivation of chemical-rate coefficients must account for the degree of vibrational nonequilibrium in the flow. A nonequilibrium-chemistry model is employed together with equilibrium-rate data to compute the flow in several different nitrogen shock waves.

  12. Analysis of intact proteins on a chromatographic time scale by electron transfer dissociation tandem mass spectrometry

    NASA Astrophysics Data System (ADS)

    Chi, An; Bai, Dina L.; Geer, Lewis Y.; Shabanowitz, Jeffrey; Hunt, Donald F.

    2007-01-01

    Direct analysis of intact proteins on a chromatographic time scale is demonstrated on a modified linear ion trap mass spectrometer using sequential ion/ion reactions, electron transfer and proton transfer, to dissociate the sample and to convert the resulting peptide fragments to a mixture of singly and doubly charged species. Proteins are converted to gas-phase, multiply charged, positive ions by electrospray ionization and then allowed to react with fluoranthene radical anions. Electron transfer to the multiply charged protein promotes random fragmentation of amide bonds along the protein backbone. Multiply charged fragment ions are then deprotonated in a second ion/ion reaction with even-electron benzoate anions. m/z values for the resulting singly and doubly charged ions are used to read a sequence of 15-40 amino acids at both the N-terminus and the C-terminus of the protein. This information, along with the measured mass of the intact protein, are employed to identify known proteins and to detect the presence of post-translational modifications. In this study, we analyze intact proteins from the Escherchia coli 70S ribosomal protein complex and identify 46 of the 55 known unique components in a single, 90 min, on-line, chromatography experiment. Truncated versions of the above proteins along with several post-translational modifications are also detected.

  13. GLOBAL ANALYSIS OF KOI-977: SPECTROSCOPY, ASTEROSEISMOLOGY, AND PHASE-CURVE ANALYSIS

    SciTech Connect

    Hirano, Teruyuki; Sato, Bun'ei; Kobayashi, Atsushi; Masuda, Kento; Benomar, Othman; Takeda, Yoichi; Omiya, Masashi; Harakawa, Hiroki

    2015-01-20

    We present a global analysis of KOI-977, one of the planet host candidates detected by Kepler. The Kepler Input Catalog (KIC) reports that KOI-977 is a red giant, for which few close-in planets have been discovered. Our global analysis involves spectroscopic and asteroseismic determinations of stellar parameters (e.g., mass and radius) and radial velocity (RV) measurements. Our analyses reveal that KOI-977 is indeed a red giant, possibly in the red clump, but its estimated radius (≳ 20 R {sub ☉} = 0.093 AU) is much larger than KOI-977.01's orbital distance (∼0.027 AU) estimated from its period (P {sub orb} ∼ 1.35 days) and host star's mass. RV measurements show a small variation, which also contradicts the amplitude of ellipsoidal variations seen in the light curve folded with KOI-977.01's period. Therefore, we conclude that KOI-977.01 is a false positive, meaning that the red giant, for which we measured the radius and RVs, is different from the object that produces the transit-like signal (i.e., an eclipsing binary). On the basis of this assumption, we also perform a light curve analysis including the modeling of transits/eclipses and phase-curve variations, adopting various values for the dilution factor D, which is defined as the flux ratio between the red giant and eclipsing binary. Fitting the whole folded light curve as well as individual transits in the short cadence data simultaneously, we find that the estimated mass and radius ratios of the eclipsing binary are consistent with those of a solar-type star and a late-type star (e.g., an M dwarf) for D ≳ 20.

  14. Parent involvement and science achievement: A latent growth curve analysis

    NASA Astrophysics Data System (ADS)

    Johnson, Ursula Yvette

    This study examined science achievement growth across elementary and middle school and parent school involvement using the Early Childhood Longitudinal Study - Kindergarten Class of 1998--1999 (ECLS-K). The ECLS-K is a nationally representative kindergarten cohort of students from public and private schools who attended full-day or half-day kindergarten class in 1998--1999. The present study's sample (N = 8,070) was based on students that had a sampling weight available from the public-use data file. Students were assessed in science achievement at third, fifth, and eighth grades and parents of the students were surveyed at the same time points. Analyses using latent growth curve modeling with time invariant and varying covariates in an SEM framework revealed a positive relationship between science achievement and parent involvement at eighth grade. Furthermore, there were gender and racial/ethnic differences in parents' school involvement as a predictor of science achievement. Findings indicated that students with lower initial science achievement scores had a faster rate of growth across time. The achievement gap between low and high achievers in earth, space and life sciences lessened from elementary to middle school. Parents' involvement with school usually tapers off after elementary school, but due to parent school involvement being a significant predictor of eighth grade science achievement, later school involvement may need to be supported and better implemented in secondary schooling.

  15. A Brief Review: The Z-curve Theory and its Application in Genome Analysis.

    PubMed

    Zhang, Ren; Zhang, Chun-Ting

    2014-04-01

    In theoretical physics, there exist two basic mathematical approaches, algebraic and geometrical methods, which, in most cases, are complementary. In the area of genome sequence analysis, however, algebraic approaches have been widely used, while geometrical approaches have been less explored for a long time. The Z-curve theory is a geometrical approach to genome analysis. The Z-curve is a three-dimensional curve that represents a given DNA sequence in the sense that each can be uniquely reconstructed given the other. The Z-curve, therefore, contains all the information that the corresponding DNA sequence carries. The analysis of a DNA sequence can then be performed through studying the corresponding Z-curve. The Z-curve method has found applications in a wide range of areas in the past two decades, including the identifications of protein-coding genes, replication origins, horizontally-transferred genomic islands, promoters, translational start sides and isochores, as well as studies on phylogenetics, genome visualization and comparative genomics. Here, we review the progress of Z-curve studies from aspects of both theory and applications in genome analysis.

  16. A Brief Review: The Z-curve Theory and its Application in Genome Analysis

    PubMed Central

    Zhang, Ren; Zhang, Chun-Ting

    2014-01-01

    In theoretical physics, there exist two basic mathematical approaches, algebraic and geometrical methods, which, in most cases, are complementary. In the area of genome sequence analysis, however, algebraic approaches have been widely used, while geometrical approaches have been less explored for a long time. The Z-curve theory is a geometrical approach to genome analysis. The Z-curve is a three-dimensional curve that represents a given DNA sequence in the sense that each can be uniquely reconstructed given the other. The Z-curve, therefore, contains all the information that the corresponding DNA sequence carries. The analysis of a DNA sequence can then be performed through studying the corresponding Z-curve. The Z-curve method has found applications in a wide range of areas in the past two decades, including the identifications of protein-coding genes, replication origins, horizontally-transferred genomic islands, promoters, translational start sides and isochores, as well as studies on phylogenetics, genome visualization and comparative genomics. Here, we review the progress of Z-curve studies from aspects of both theory and applications in genome analysis. PMID:24822026

  17. Determination of the optimum working range from a calibration curve for colorimetric analysis with an "autoanalyzer".

    PubMed

    Whitehead, D

    1973-02-01

    A study has been made of the types and distribution of errors in determining the optimum working range from a calibration curve for automated analysis. Three error equations are derived for the fitting of a linear, quadratic or cubic curve, involving a thorough statistical analysis of the data. The errors from a set of silica and alumina standards, requiring a quadratic and cubic fit respectively, compare favourably with replicate analyses of standard rocks done on a previous occasion. PMID:18961254

  18. Molecular dynamics study of CO2 hydrate dissociation: Fluctuation-dissipation and non-equilibrium analysis

    NASA Astrophysics Data System (ADS)

    English, Niall J.; Clarke, Elaine T.

    2013-09-01

    Equilibrium and non-equilibrium molecular dynamics (MD) simulations have been performed to investigate thermal-driven break-up of planar CO2 hydrate interfaces in liquid water at 300-320 K. Different guest compositions, at 85%, 95%, and 100% of maximum theoretical occupation, led to statistically-significant differences in the observed initial dissociation rates. The melting temperatures of each interface were estimated, and dissociation rates were observed to be strongly dependent on temperature, with higher dissociation rates at larger over-temperatures vis-à-vis melting. A simple coupled mass and heat transfer model developed previously was applied to fit the observed dissociation profiles, and this helps to identify clearly two distinct régimes of break-up; a second well-defined region is essentially independent of composition and temperature, in which the remaining nanoscale, de facto two-dimensional system's lattice framework is intrinsically unstable. From equilibrium MD of the two-phase systems at their melting point, the relaxation times of the auto-correlation functions of fluctuations in number of enclathrated guest molecules were used as a basis for comparison of the variation in the underlying, non-equilibrium, thermal-driven dissociation rates via Onsager's hypothesis, and statistically significant differences were found, confirming the value of a fluctuation-dissipation approach in this case.

  19. Investigating the possible effects of trauma experiences and 5-HTT on the dissociative experiences of patients with OCD using path analysis and multiple regression.

    PubMed

    Lochner, Christine; Seedat, Soraya; Hemmings, Sian M J; Moolman-Smook, Johanna C; Kidd, Martin; Stein, Dan J

    2007-01-01

    Dissociation is defined as the disruption of the usually integrated functions of consciousness, such as memory, identity, and perceptions of the environment. Causes include various psychological, neurological and neurobiological mechanisms, none of which have been consistently supported. To our knowledge, the role of gene-environment interactions in dissociative experiences in obsessive-compulsive disorder (OCD) has not previously been investigated. Eighty-three Caucasian patients (29 male, 54 female) with a principal diagnosis of OCD were included. The Dissociative Experiences Scale was used to assess dissociation. The role of childhood trauma (assessed with the Childhood Trauma Questionnaire), and a functional 44-bp insertion/deletion polymorphism in the promoter region of the serotonin transporter, or 5-HTT, in mediating dissociation, was investigated using multiple regression analysis and path analysis using the partial least squares model. Both analyses indicated that an interaction between physical neglect and the S/S genotype of the 5-HTT gene significantly predicted dissociation in patients with OCD. Dissociation may be a predictor of poorer treatment outcome in patients with OCD; therefore, a better understanding of the mechanisms that underlie this phenomenon may be useful. Here, two different but related statistical techniques (multiple regression and partial least squares), confirmed that physical neglect and the 5-HTT genotype jointly play a role in predicting dissociation in OCD. PMID:17943026

  20. Investigating the possible effects of trauma experiences and 5-HTT on the dissociative experiences of patients with OCD using path analysis and multiple regression.

    PubMed

    Lochner, Christine; Seedat, Soraya; Hemmings, Sian M J; Moolman-Smook, Johanna C; Kidd, Martin; Stein, Dan J

    2007-01-01

    Dissociation is defined as the disruption of the usually integrated functions of consciousness, such as memory, identity, and perceptions of the environment. Causes include various psychological, neurological and neurobiological mechanisms, none of which have been consistently supported. To our knowledge, the role of gene-environment interactions in dissociative experiences in obsessive-compulsive disorder (OCD) has not previously been investigated. Eighty-three Caucasian patients (29 male, 54 female) with a principal diagnosis of OCD were included. The Dissociative Experiences Scale was used to assess dissociation. The role of childhood trauma (assessed with the Childhood Trauma Questionnaire), and a functional 44-bp insertion/deletion polymorphism in the promoter region of the serotonin transporter, or 5-HTT, in mediating dissociation, was investigated using multiple regression analysis and path analysis using the partial least squares model. Both analyses indicated that an interaction between physical neglect and the S/S genotype of the 5-HTT gene significantly predicted dissociation in patients with OCD. Dissociation may be a predictor of poorer treatment outcome in patients with OCD; therefore, a better understanding of the mechanisms that underlie this phenomenon may be useful. Here, two different but related statistical techniques (multiple regression and partial least squares), confirmed that physical neglect and the 5-HTT genotype jointly play a role in predicting dissociation in OCD.

  1. Dissociative electron transfer in polychlorinated aromatics. Reduction potentials from convolution analysis and quantum chemical calculations.

    PubMed

    Romańczyk, Piotr P; Rotko, Grzegorz; Kurek, Stefan S

    2016-08-10

    Formal potentials of the first reduction leading to dechlorination in dimethylformamide were obtained from convolution analysis of voltammetric data and confirmed by quantum chemical calculations for a series of polychlorinated benzenes: hexachlorobenzene (-2.02 V vs. Fc(+)/Fc), pentachloroanisole (-2.14 V), and 2,4-dichlorophenoxy- and 2,4,5-trichlorophenoxyacetic acids (-2.35 V and -2.34 V, respectively). The key parameters required to calculate the reduction potential, electron affinity and/or C-Cl bond dissociation energy, were computed at both DFT-D and CCSD(T)-F12 levels. Comparison of the obtained gas-phase energies and redox potentials with experiment enabled us to verify the relative energetics and the performance of various implicit solvent models. Good agreement with the experiment was achieved for redox potentials computed at the DFT-D level, but only for the stepwise mechanism owing to the error compensation. For the concerted electron transfer/C-Cl bond cleavage process, the application of a high level coupled cluster method is required. Quantum chemical calculations have also demonstrated the significant role of the π*ring and σ*C-Cl orbital mixing. It brings about the stabilisation of the non-planar, C2v-symmetric C6Cl6˙(-) radical anion, explains the experimentally observed low energy barrier and the transfer coefficient close to 0.5 for C6Cl5OCH3 in an electron transfer process followed by immediate C-Cl bond cleavage in solution, and an increase in the probability of dechlorination of di- and trichlorophenoxyacetic acids due to substantial population of the vibrational excited states corresponding to the out-of-plane C-Cl bending at ambient temperatures.

  2. Dissociative electron transfer in polychlorinated aromatics. Reduction potentials from convolution analysis and quantum chemical calculations.

    PubMed

    Romańczyk, Piotr P; Rotko, Grzegorz; Kurek, Stefan S

    2016-08-10

    Formal potentials of the first reduction leading to dechlorination in dimethylformamide were obtained from convolution analysis of voltammetric data and confirmed by quantum chemical calculations for a series of polychlorinated benzenes: hexachlorobenzene (-2.02 V vs. Fc(+)/Fc), pentachloroanisole (-2.14 V), and 2,4-dichlorophenoxy- and 2,4,5-trichlorophenoxyacetic acids (-2.35 V and -2.34 V, respectively). The key parameters required to calculate the reduction potential, electron affinity and/or C-Cl bond dissociation energy, were computed at both DFT-D and CCSD(T)-F12 levels. Comparison of the obtained gas-phase energies and redox potentials with experiment enabled us to verify the relative energetics and the performance of various implicit solvent models. Good agreement with the experiment was achieved for redox potentials computed at the DFT-D level, but only for the stepwise mechanism owing to the error compensation. For the concerted electron transfer/C-Cl bond cleavage process, the application of a high level coupled cluster method is required. Quantum chemical calculations have also demonstrated the significant role of the π*ring and σ*C-Cl orbital mixing. It brings about the stabilisation of the non-planar, C2v-symmetric C6Cl6˙(-) radical anion, explains the experimentally observed low energy barrier and the transfer coefficient close to 0.5 for C6Cl5OCH3 in an electron transfer process followed by immediate C-Cl bond cleavage in solution, and an increase in the probability of dechlorination of di- and trichlorophenoxyacetic acids due to substantial population of the vibrational excited states corresponding to the out-of-plane C-Cl bending at ambient temperatures. PMID:27477334

  3. A light-curve distortion-wave analysis of eight RS Canum Venaticorum systems

    NASA Astrophysics Data System (ADS)

    Caton, D. B.

    1986-01-01

    A program of differential U,B,V photometry of 14 RS CVn systems carried out at Rosemary Hill Observatory in 1978 - 1981 is described, and an analysis of the light curves for the characteristic distortion wave for eight of the systems is presented. The V light curves of the systems are shown. Significant waves were observed in RS CVn, RZ Eri, and RW UMa. No significant waves were found in UX Com, GK Hya, AR Lac, LX Per, or TY Pyx. Unusual light curve distortions were observed in UX Com and AR Lac.

  4. WTF- and A- Stars: Spectroscopic Analysis of Kepler Light Curves

    NASA Astrophysics Data System (ADS)

    Grae Short, Miona; Soderblom, David R.

    2016-01-01

    Analysis of Kepler data in 2012 found that in a sample of about 2000 A- and F- stars, 1% of them seemed to exhibit white light flares. However, such stars are not thought to have the convective envelopes needed to produce the magnetic dynamos that yield flares. We use the same Kepler data but examine the flaring stars more comprehensively by analyzing the pixel data in order to predict whether this flare-like behavior may be caused by smaller, less luminous M dwarfs exhibiting genuine flares in the line of sight of the A- and F-stars. The implications of finding verifiable flare activity in a subset of these stars would be enough to incite further investigation of the physical processes that allow this to take place. Yet, if that were not the case, this project would further be able to demonstrate the steps necessary to correct for false-positives in finding flares in A- and F- stars.

  5. Spectroscopic constants and potential energy curve of the iodine weakly bound 1u state correlating with the I(2P1/2) + I(2P1/2) dissociation limit

    NASA Astrophysics Data System (ADS)

    Akopyan, M. E.; Baturo, V. V.; Lukashov, S. S.; Poretsky, S. A.; Pravilov, A. M.

    2015-01-01

    The stepwise three-step three-color laser population of the I2(β1g, νβ, Jβ) rovibronic states via the B0u+, νB, JB rovibronic states and rovibronic levels of the 1u(bb) and 0g+(bb) states mixed by hyperfine interaction is used for determination of rovibronic level energies of the weakly bound I2(1u(bb)) state. Dunham coefficients of the state, Yi0 (i = 0-3), Yi1 (i = 0-2), Y02 and Y12 for the {{v}{{1u}}} = 1-5, 8, 10, 15 and {{J}{{1u}}} ≈ 9-87 ranges, the dissociation energy of the state, De, and equilibrium I-I distance, Re, as well as the potential energy curve are determined. There are aperiodicities in the excitation spectrum corresponding to the β, νβ = 23, Jβ ← 1u(bb), ν1u = 4, 5, J1u progressions in the I2 + Rg = He, Ar mixture, namely, a great number of lines which do not coincide with the R or P line progressions. Their positions conflict with the ΔJ-even selection rule. Furthermore, they do not correspond to the ΔJ-odd progression.

  6. Characterization of Gas Hydrates Formation and Dissociation Using Thermal Analysis and Calorimetry

    NASA Astrophysics Data System (ADS)

    Rudow, M.; Lilova, K.

    2015-12-01

    In general, the gas hydrates are formed at low temperature and high pressure which requires a special technique to mimic the natural conditions. The hydrate thermal properties: heat capacity, heat of dissociation, are crucial for evaluating the effects on climate change and for a prediction of the gas production rates from hydrate reservoirs. The effect of the porous materials on the dissociation of synthetic methane hydrates was investigated at 150 - 300 K and atmospheric pressure. Another experiment with methane hydrates, but at high pressure (20 MPa) was performed at near room temperature using a highly sensitive micro-differential scanning calorimeter with a specifically design high pressure vessel (the vessel can withstand a pressure up to 1000 bars). The thermal cycle for measuring the methane hydrate dissociation in water includes cooling down a water solution under a certain methane pressure (30 to 350 bars) to -30 C to allow water crystallization and hydrate formation, then heated up to room temperature. The endothermic peak, following the ice melting is associated to the hydrate dissociation process and gives the enthalpy of the hydrate decomposition. The kinetics of the hydrates formation could also be predicted by a rapid DSC cooling experiment followed by isothermal step and heating. Both dissociation and specific heats of synthetic methane and ethane hydrates were measured under high-pressure condition by using a heat-flow type calorimeter to understand thermodynamic properties of gas hydrates under submarine/sublacustrine environments. The large reserves of natural gas are present as clathrate hydrates in permafrost regions and beneath the oceans have generated interest in the study of their thermophysical properties such as heat capacity and thermal conductivity. The effect of isotopic substitution in both THF and water on the eutectic and hydrate melting temperatures in water-tetrahydrofuran systems studied by DSC will be shown as an example.

  7. The mathematical analysis of the heart rate and blood lactate curves during incremental exercise testing.

    PubMed

    Rosic, Mirko; Ilic, V; Obradovic, Z; Pantovic, S; Rosic, G

    2011-12-01

    This paper describes a new mathematical approach for the analysis of HR (heart rate) and BL (blood lactate) curves during incremental exercise testing using a HR/BL curve and its derivatives, taking into account the native shape of all curves, without any linear approximation. Using this approach the results indicate the appearance of three characteristic points (A, B and C) on the HR/BL curve. The point A on the HR/BL curve which is the value that corresponds to the load (12.73 ± 0.46 km h-1) at which BL starts to increase above the resting levels (0.9 ± 0.06 mM), and is analogous to Lactate Turn Point 1 (LTP1). The point C on the HR/BL curve which corresponds to a BL of approximately 4mM, and is analogous to LTP2. The point B on the HR/BL curve, which corresponds to the load (16.32 ± 0.49 km h-1) at which the moderate increase turns into a more pronounced increase in BL. This point has not been previously recognized in literature. We speculate this point represents attenuation of left ventricular ejection fraction (LVEF) increase, accompanied by the decrease in diastolic time duration during incremental exercise testing. Proposed mathematical approach allows precise determination of lactate turnpoints during incremental exercise testing.

  8. Development of synthetic flood damage curve by explicit costs analysis

    NASA Astrophysics Data System (ADS)

    Martina, Mario; Molinari, Daniela; Dottori, Francesco; Scorzini, Annarita

    2015-04-01

    characteristics. Such functions were developed using a what-if analysis using data collected after the 2012 flood in the Umbria Region in Central Italy, as well as authors' experience, as reference to understand damage mechanisms. Observed damage data were also used to calibrate the functions.

  9. A new methodology for free wake analysis using curved vortex elements

    NASA Technical Reports Server (NTRS)

    Bliss, Donald B.; Teske, Milton E.; Quackenbush, Todd R.

    1987-01-01

    A method using curved vortex elements was developed for helicopter rotor free wake calculations. The Basic Curve Vortex Element (BCVE) is derived from the approximate Biot-Savart integration for a parabolic arc filament. When used in conjunction with a scheme to fit the elements along a vortex filament contour, this method has a significant advantage in overall accuracy and efficiency when compared to the traditional straight-line element approach. A theoretical and numerical analysis shows that free wake flows involving close interactions between filaments should utilize curved vortex elements in order to guarantee a consistent level of accuracy. The curved element method was implemented into a forward flight free wake analysis, featuring an adaptive far wake model that utilizes free wake information to extend the vortex filaments beyond the free wake regions. The curved vortex element free wake, coupled with this far wake model, exhibited rapid convergence, even in regions where the free wake and far wake turns are interlaced. Sample calculations are presented for tip vortex motion at various advance ratios for single and multiple blade rotors. Cross-flow plots reveal that the overall downstream wake flow resembles a trailing vortex pair. A preliminary assessment shows that the rotor downwash field is insensitive to element size, even for relatively large curved elements.

  10. Numerical analysis of curved frequency selective surface by finite-difference time-domain

    NASA Astrophysics Data System (ADS)

    Chen, Xin-yi; Wang, Jian-bo; Chen, Gui-bo; Sun, Guan-cheng; Lu, Jun

    2011-08-01

    Frequency selective surface is a monolayer or multilayer 2D periodic structure which is composed of multiple resonance units scattering by a two-dimensional periodic array on dielectric layer. FSS can't absorb radio frequency energy, but can filter the frequency which is therefore applied in microwave technique or stealth technology. The relative research on curved FSS is relatively scarce since the curved FSS structure can be obtained only when FSS is attached on the materials surfaces of curved structures in engineering application. However, curved FSS is widely applied in practical engineering; therefore, the research on curved FSS structure has important significance. In this paper, a curved FSS structure model of Y-pore unit is established and numerical simulated by means of FDTD. The influence of curvature on FSS transmission characteristics is studied according to the analysis on the changing of radar cross section (RCS). The results show: the center frequency point of the plane band pass FSS structure drifts after the curve surface deformation of the structure; the center frequency point of the curved band pass FSS structure drifts with the changing of the curvature radius, i. e. with the decreasing of curvature radius, the frequency point drifts towards high points and the transmittance decreases. The design of FSS radome demands of accurate and stable center resonance frequency; therefore, the actual situation of curved surface should be considered in practical engineering application when band pass FSS is made into frequency selection filtering radome. The curvature radius should be long enough to avoid center frequency drifting and transmittance deceasing.

  11. Light curve morphology analysis of contact binaries observed with the Kepler satellite

    NASA Astrophysics Data System (ADS)

    Debski, Bartłomiej; Zoła, Stanisław

    2014-09-01

    Light-curve morphology analysis of contact binaries provides model-independent insight into the short-term evolution of the system activity. Light-curve morphology applied to the Kepler data of contact binaries reveals directly the migration spot connection to the light curve's intrinsic rapid changes. Since the flat-bottom secondary minima cannot be studied in the way Tran et al. (2013) or Conroy et al. (2014) did, we measure the actual light-curve minimum, instead of the presumed mid-eclipse time. This, combined with the study of the minimum depth, allowed us to uncover the direction of the spot migration for particular binaries. At the same time, the O'Connell effect evolution and the maxima separation confronted with modeling based on the Wilson-Devinney code agree with polar dark spots. The combined results of this new approach offer constraints on the star spots size, temperature and latitude at high precision.

  12. Analysis of Biochemical Equilibria Relevant to the Immune Response: Finding the Dissociation Constants.

    PubMed

    Cummings, L J; Perez-Castillejos, R; Mack, E T

    2012-02-01

    This paper analyzes the biochemical equilibria between bivalent receptors, homo-bifunctional ligands, monovalent inhibitors, and their complexes. Such reaction schemes arise in the immune response, where immunoglobulins (bivalent receptors) bind to pathogens or allergens. The equilibria may be described by an infinite system of algebraic equations, which accounts for complexes of arbitrary size n (n being the number of receptors present in the complex). The system can be reduced to just 3 algebraic equations for the concentrations of free (unbound) receptor, free ligand and free inhibitor. Concentrations of all other complexes can be written explicitly in terms of these variables. We analyze how concentrations of key (experimentally-measurable) quantities vary with system parameters. Such measured quantities can furnish important information about dissociation constants in the system, which are difficult to obtain by other means. We provide analytical expressions and suggest specific experiments that could be used to determine the dissociation constants.

  13. AtomicJ: an open source software for analysis of force curves.

    PubMed

    Hermanowicz, Paweł; Sarna, Michał; Burda, Kvetoslava; Gabryś, Halina

    2014-06-01

    We present an open source Java application for analysis of force curves and images recorded with the Atomic Force Microscope. AtomicJ supports a wide range of contact mechanics models and implements procedures that reduce the influence of deviations from the contact model. It generates maps of mechanical properties, including maps of Young's modulus, adhesion force, and sample height. It can also calculate stacks, which reveal how sample's response to deformation changes with indentation depth. AtomicJ analyzes force curves concurrently on multiple threads, which allows for high speed of analysis. It runs on all popular operating systems, including Windows, Linux, and Macintosh. PMID:24985823

  14. AtomicJ: An open source software for analysis of force curves

    NASA Astrophysics Data System (ADS)

    Hermanowicz, Paweł; Sarna, Michał; Burda, Kvetoslava; Gabryś, Halina

    2014-06-01

    We present an open source Java application for analysis of force curves and images recorded with the Atomic Force Microscope. AtomicJ supports a wide range of contact mechanics models and implements procedures that reduce the influence of deviations from the contact model. It generates maps of mechanical properties, including maps of Young's modulus, adhesion force, and sample height. It can also calculate stacks, which reveal how sample's response to deformation changes with indentation depth. AtomicJ analyzes force curves concurrently on multiple threads, which allows for high speed of analysis. It runs on all popular operating systems, including Windows, Linux, and Macintosh.

  15. AtomicJ: An open source software for analysis of force curves

    SciTech Connect

    Hermanowicz, Paweł Gabryś, Halina; Sarna, Michał; Burda, Kvetoslava

    2014-06-15

    We present an open source Java application for analysis of force curves and images recorded with the Atomic Force Microscope. AtomicJ supports a wide range of contact mechanics models and implements procedures that reduce the influence of deviations from the contact model. It generates maps of mechanical properties, including maps of Young's modulus, adhesion force, and sample height. It can also calculate stacks, which reveal how sample's response to deformation changes with indentation depth. AtomicJ analyzes force curves concurrently on multiple threads, which allows for high speed of analysis. It runs on all popular operating systems, including Windows, Linux, and Macintosh.

  16. Analysis of the N2O dissociation in a RF discharge reactor

    NASA Astrophysics Data System (ADS)

    Date, L.; Radouane, K.; Despax, B.; Yousfi, M.; Caquineau, H.; Hennad, A.

    1999-07-01

    In situ diagnostic measurements and reactor modelling are used to study the N2O dissociation by radio frequency (RF) discharges. Measurements are undertaken at 0.5 and 1 Torr gas pressure with a RF power density varying from 4.2 to 35.7 mW cm-2. The reactor modelling involves an electrical discharge model coupled to hydrodynamic and mass transfer models. Only an electrical discharge model accounting for the negative ion conversion from O- to NO- and the subsequent electron detachment allow a good coherence between the measured and predicted power densities. The electron-N2O dissociation cross sections are first fitted in the present work and then the corresponding dissociation rates, obtained from the electrical model, are used in the mass transfer model which includes eight species (N2O, N2, O2, NO, NO2, N, O(3P) and O(1D)). The corresponding results are in good agreement with the experimental ones related to the production of N2 and O2 and the consumption of N2O. Furthermore, the reactor model results show that N2 and O2 are the most abundant products (>1014 molecules/cm3) at 1 Torr.

  17. Retrospective North American CFL Experience Curve Analysis and Correlation to Deployment Programs

    SciTech Connect

    Smith, Sarah J.; Wei, Max; Sohn, Michael D.

    2015-07-01

    Retrospective experience curves are a useful tool for understanding historic technology development, and can contribute to investment program analysis and future cost estimation efforts. This work documents our development of an analysis approach for deriving retrospective experience curves with a variable learning rate, and its application to develop an experience curve for compact fluorescent lamps for the global and North American markets over the years 1990-2007. Uncertainties and assumptions involved in interpreting data for our experience curve development are discussed, including the processing and transformation of empirical data, the selection of system boundaries, and the identification of historical changes in the learning rate over the course of 15 years. In the results that follow, we find that that the learning rate has changed at least once from 1990-2007. We also explore if, and to what degree, public deployment programs may have contributed to an increased technology learning rate in North America. We observe correlations between the changes in the learning rate and the initiation of new policies, abrupt technological advances, including improvements to ballast technology, and economic and political events such as trade tariffs and electricity prices. Finally, we discuss how the findings of this work (1) support the use of segmented experience curves for retrospective and prospective analysis and (2) may imply that investments in technological research and development have contributed to a change in market adoption and penetration.

  18. DIFFRACTION DISSOCIATION - 50 YEARS LATER.

    SciTech Connect

    WHITE, S.N.

    2005-04-27

    The field of Diffraction Dissociation, which is the subject of this workshop, began 50 years ago with the analysis of deuteron stripping in low energy collisions with nuclei. We return to the subject in a modern context- deuteron dissociation in {radical}s{sub NN} = 200 GeV d-Au collisions recorded during the 2003 RHIC run in the PHENIX experiment. At RHIC energy, d {yields} n+p proceeds predominantly (90%) through Electromagnetic Dissociation and the remaining fraction via the hadronic shadowing described by Glauber. Since the dissociation cross section has a small theoretical error we adopt this process to normalize other cross sections measured in RHIC.

  19. Comparison of sustained off-resonance irradiation collisionally activated dissociation and multipole storage-assisted dissociation for top-down protein analysis.

    PubMed

    Keller, Karin M; Brodbelt, Jennifer S; Hettich, Robert L; Van Berkel, Gary J

    2004-04-01

    Tandem mass spectrometric data acquired for small (8-18 kDa) intact proteins by sustained off-resonance irradiation collisionally activated dissociation (SORI-CAD) and multipole storage-assisted dissociation (MSAD) were compared, and the results indicate that the two activation methods do not always provide the same fragmentation patterns. In MSAD experiments, the charge state distribution made available by the ionization conditions may dictate the range of fragment ions that can be generated. In addition, conditions of high space charge within the hexapole impair transmission and/or trapping of high m/z species, which can result in loss of important precursor and product ions. Finally, the non-resonant nature of activation in MSAD can provide access to secondary dissociation processes that are not available by SORI. Because of these considerations, MSAD is less reliable than SORI for generating sequence tag data. However, it appears that MSAD samples 'preferred' cleavage processes (i.e. those occurring at D and P residues) just as well as SORI, which implies that MSAD data may be somewhat more compatible with search algorithms that utilize unprocessed fragment ion masses.

  20. Comparison of sustained off-resonance irradiation collisionally activated dissociation and multipole storage-assisted dissociation for top-down protein analysis

    SciTech Connect

    Keller, Karin M; Brodbelt, Jennifer S; Hettich, Robert {Bob} L; Van Berkel, Gary J

    2004-01-01

    Tandem mass spectrometric data acquired for small (8--18 kDa) intact proteins by sustained off-resonance irradiation collisionally activated dissociation (SORI-CAD) and multipole storage-assisted dissociation (MSAD) were compared, and the results indicate that the two activation methods do not always provide the same fragmentation patterns. In MSAD experiments, the charge state distribution made available by the ionization conditions may dictate the range of fragment ions that can be generated. In addition, conditions of high space charge within the hexapole impair transmission and/or trapping of high m/z species, which can result in loss of important precursor and product ions. Finally, the non-resonant nature of activation in MSAD can provide access to secondary dissociation processes that are not available by SORI. Because of these considerations, MSAD is less reliable than SORI for generating sequence tag data. However, it appears that MSAD samples 'preferred' cleavage processes (i.e. those occurring at D and P residues) just as well as SORI, which implies that MSAD data may be somewhat more compatible with search algorithms that utilize unprocessed fragment ion masses.

  1. Soil hydraulic properties estimate based on numerical analysis of disc infiltrometer three-dimensional infiltration curve

    NASA Astrophysics Data System (ADS)

    Latorre, Borja; Peña-Sancho, Carolina; Angulo-Jaramillo, Rafaël; Moret-Fernández, David

    2015-04-01

    Measurement of soil hydraulic properties is of paramount importance in fields such as agronomy, hydrology or soil science. Fundamented on the analysis of the Haverkamp et al. (1994) model, the aim of this paper is to explain a technique to estimate the soil hydraulic properties (sorptivity, S, and hydraulic conductivity, K) from the full-time cumulative infiltration curves. The method (NSH) was validated by means of 12 synthetic infiltration curves generated with HYDRUS-3D from known soil hydraulic properties. The K values used to simulate the synthetic curves were compared to those estimated with the proposed method. A procedure to identify and remove the effect of the contact sand layer on the cumulative infiltration curve was also developed. A sensitivity analysis was performed using the water level measurement as uncertainty source. Finally, the procedure was evaluated using different infiltration times and data noise. Since a good correlation between the K used in HYDRUS-3D to model the infiltration curves and those estimated by the NSH method was obtained, (R2 =0.98), it can be concluded that this technique is robust enough to estimate the soil hydraulic conductivity from complete infiltration curves. The numerical procedure to detect and remove the influence of the contact sand layer on the K and S estimates seemed to be robust and efficient. An effect of the curve infiltration noise on the K estimate was observed, which uncertainty increased with increasing noise. Finally, the results showed that infiltration time was an important factor to estimate K. Lower values of K or smaller uncertainty needed longer infiltration times.

  2. Taxometrics, Polytomous Constructs, and the Comparison Curve Fit Index: A Monte Carlo Analysis

    ERIC Educational Resources Information Center

    Walters, Glenn D.; McGrath, Robert E.; Knight, Raymond A.

    2010-01-01

    The taxometric method effectively distinguishes between dimensional (1-class) and taxonic (2-class) latent structure, but there is virtually no information on how it responds to polytomous (3-class) latent structure. A Monte Carlo analysis showed that the mean comparison curve fit index (CCFI; Ruscio, Haslam, & Ruscio, 2006) obtained with 3…

  3. Aptitude-Treatment Interaction Effects on Explicit Rule Learning: A Latent Growth Curve Analysis

    ERIC Educational Resources Information Center

    Hwu, Fenfang; Pan, Wei; Sun, Shuyan

    2014-01-01

    Finding the match between individuals and educational treatments is the aim of both educators and the aptitude-treatment interaction research paradigm. Using the latent growth curve analysis, the present study investigates the interaction between the type of explicit instructional approaches (deductive vs. explicit-inductive) and the level of…

  4. Policy Effectiveness and the Slopes of IS and LM Curves: A Graphical Analysis.

    ERIC Educational Resources Information Center

    Revier, Charles F.

    2000-01-01

    Focuses on the IS-LM model providing a graphical analysis designed to clarify the confusion induced by misleading statements in several major macroeconomics textbooks concerning the connection between policy effectiveness and the slopes of the IS and LM curves. Includes references. (CMK)

  5. Understanding selenocysteine through conformational analysis, proton affinities, acidities and bond dissociation energies

    NASA Astrophysics Data System (ADS)

    Kaur, Damanjit; Sharma, Punita; Bharatam, Prasad V.; Kaur, Mondeep

    Density functional methods have been employed to characterize the gas phase conformations of selenocysteine. The 33 stable conformers of selenocysteine have been located on the potential energy surface using density functional B3LYP/6-31+G* method. The conformers are analyzed in terms of intramolecular hydrogen bonding interactions. The proton affinity, gas phase acidities, and bond dissociation energies have also been evaluated for different reactive sites of selenocysteine for the five lowest energy conformers at B3LYP/6-311++G*//B3LYP/6-31+G* level. Evaluation of these intrinsic properties reflects the antioxidant activity of selenium in selenocysteine.0

  6. IMAGE-PLANE ANALYSIS OF n-POINT-MASS LENS CRITICAL CURVES AND CAUSTICS

    SciTech Connect

    Danek, Kamil; Heyrovský, David E-mail: heyrovsky@utf.mff.cuni.cz

    2015-06-10

    The interpretation of gravitational microlensing events caused by planetary systems or multiple stars is based on the n-point-mass lens model. The first planets detected by microlensing were well described by the two-point-mass model of a star with one planet. By the end of 2014, four events involving three-point-mass lenses had been announced. Two of the lenses were stars with two planetary companions each; two were binary stars with a planet orbiting one component. While the two-point-mass model is well understood, the same cannot be said for lenses with three or more components. Even the range of possible critical-curve topologies and caustic geometries of the three-point-mass lens remains unknown. In this paper we provide new tools for mapping the critical-curve topology and caustic cusp number in the parameter space of n-point-mass lenses. We perform our analysis in the image plane of the lens. We show that all contours of the Jacobian are critical curves of re-scaled versions of the lens configuration. Utilizing this property further, we introduce the cusp curve to identify cusp-image positions on all contours simultaneously. In order to track cusp-number changes in caustic metamorphoses, we define the morph curve, which pinpoints the positions of metamorphosis-point images along the cusp curve. We demonstrate the usage of both curves on simple two- and three-point-mass lens examples. For the three simplest caustic metamorphoses we illustrate the local structure of the image and source planes.

  7. Progress curve analysis of qRT-PCR reactions using the logistic growth equation.

    PubMed

    Liu, Meile; Udhe-Stone, Claudia; Goudar, Chetan T

    2011-01-01

    We present an alternate approach for analyzing data from real-time reverse transcription polymerase chain reaction (qRT-PCR) experiments by fitting individual fluorescence vs. cycle number (F vs. C) curves to the logistic growth equation. The best fit parameters determined by nonlinear least squares were used to compute the second derivative of the logistic equation and the cycle threshold, C(t), was determined from the maximum value of the second derivative. This C(t) value was subsequently used to determine ΔΔC(t) and the amplification efficiency, E(n), thereby completing the analysis on a qRT-PCR data set. The robustness of the logistic approach was verified by testing ~600 F vs. C curves using both new and previously published data sets. In most cases, comparisons were made between the logistic estimates and those from the standard curve and comparative C(t) methods. Deviations between the logistic and standard curve method ranged between 3-10% for C(t) estimates, 2-10% for ΔΔC(t) estimates, and 1-11% for E(n) estimates. The correlations between C(t) estimates from the logistic and standard curve methods were very high, often >0.95. When compared with five other established methods of qRT-PCR data analysis to predict initial concentrations of two genes encompassing a total of 500 F vs. C curves, the logistic estimates were of comparable accuracy. This reliable performance of the logistic approach comes without the need to construct standard curves which can be a laborious undertaking. Also, no a priori assumptions for E(n) are necessary while some other methods assume equal E(n) values for the reference and target genes, an assumption that is not universally valid. In addition, by accurately describing the data in the plateau region of the F vs. C curve, the logistic method overcomes the limitations of the sigmoidal curve fitting method. The streamlined nature of the logistic approach makes it ideal for complete automation on a variety of computing

  8. Characterizing Decision-Analysis Performances of Risk Prediction Models Using ADAPT Curves

    PubMed Central

    Lee, Wen-Chung; Wu, Yun-Chun

    2016-01-01

    Abstract The area under the receiver operating characteristic curve is a widely used index to characterize the performance of diagnostic tests and prediction models. However, the index does not explicitly acknowledge the utilities of risk predictions. Moreover, for most clinical settings, what counts is whether a prediction model can guide therapeutic decisions in a way that improves patient outcomes, rather than to simply update probabilities. Based on decision theory, the authors propose an alternative index, the “average deviation about the probability threshold” (ADAPT). An ADAPT curve (a plot of ADAPT value against the probability threshold) neatly characterizes the decision-analysis performances of a risk prediction model. Several prediction models can be compared for their ADAPT values at a chosen probability threshold, for a range of plausible threshold values, or for the whole ADAPT curves. This should greatly facilitate the selection of diagnostic tests and prediction models. PMID:26765451

  9. Segmented coupled-wave analysis of a curved wire-grid polarizer.

    PubMed

    Kim, Donghyun; Sim, Eunji

    2008-03-01

    The performance of a wire-grid polarizer (WGP) on a curved surface was investigated with a simple numerical model. The computation model combines rigorous coupled-wave analysis with piecewise linear segmentation that approximates a curved surface for two bending configurations. A curvature-induced Rayleigh anomaly is found to be the main performance degradation mechanism that reduces transmittance and polarization contrast. A WGP on a curved surface is more likely to incur the Rayleigh anomaly with smaller surface curvature. For a given curvature, a larger WGP is more vulnerable. Effects of polar and azimuthal incidence angles were also analyzed. Suggestions were made in regard to a WGP design that minimizes the performance degradation.

  10. Effects of variable recruitment on catch-curve analysis for crappie populations

    USGS Publications Warehouse

    Allen, M.S.

    1997-01-01

    Catch-curve analysis is frequently used to estimate total annual mortality (A) of exploited fishes, but the method assumes constant recruitment. Because populations of crappie Pomoxis spp. have exhibited large fluctuations in recruitment, I conducted simulations to assess the amount of variability in recruitment that precludes the use of a catch curve and compared results to recruitment dynamics in six crappie populations. Coefficients of variation (CV = 100 ?? SD/mean) in recruitment to age 1 ranged from 55% to 84% among the six crappie populations. Simulations suggested that recruitment variability in these ranges would likely allow estimation of A within ?? 10%, but the probability of obtaining estimates of A that were ??5% or more of the true A would exceed 0.15. I suggest that catch curves may be used to approximate A in crappie populations but that managers should consider the effects on management recommendations if A were ??10% of the estimated A.

  11. The analysis of dose-response curve from bioassays with quantal response: Deterministic or statistical approaches?

    PubMed

    Mougabure-Cueto, G; Sfara, V

    2016-04-25

    Dose-response relations can be obtained from systems at any structural level of biological matter, from the molecular to the organismic level. There are two types of approaches for analyzing dose-response curves: a deterministic approach, based on the law of mass action, and a statistical approach, based on the assumed probabilities distribution of phenotypic characters. Models based on the law of mass action have been proposed to analyze dose-response relations across the entire range of biological systems. The purpose of this paper is to discuss the principles that determine the dose-response relations. Dose-response curves of simple systems are the result of chemical interactions between reacting molecules, and therefore are supported by the law of mass action. In consequence, the shape of these curves is perfectly sustained by physicochemical features. However, dose-response curves of bioassays with quantal response are not explained by the simple collision of molecules but by phenotypic variations among individuals and can be interpreted as individual tolerances. The expression of tolerance is the result of many genetic and environmental factors and thus can be considered a random variable. In consequence, the shape of its associated dose-response curve has no physicochemical bearings; instead, they are originated from random biological variations. Due to the randomness of tolerance there is no reason to use deterministic equations for its analysis; on the contrary, statistical models are the appropriate tools for analyzing these dose-response relations.

  12. The analysis of dose-response curve from bioassays with quantal response: Deterministic or statistical approaches?

    PubMed

    Mougabure-Cueto, G; Sfara, V

    2016-04-25

    Dose-response relations can be obtained from systems at any structural level of biological matter, from the molecular to the organismic level. There are two types of approaches for analyzing dose-response curves: a deterministic approach, based on the law of mass action, and a statistical approach, based on the assumed probabilities distribution of phenotypic characters. Models based on the law of mass action have been proposed to analyze dose-response relations across the entire range of biological systems. The purpose of this paper is to discuss the principles that determine the dose-response relations. Dose-response curves of simple systems are the result of chemical interactions between reacting molecules, and therefore are supported by the law of mass action. In consequence, the shape of these curves is perfectly sustained by physicochemical features. However, dose-response curves of bioassays with quantal response are not explained by the simple collision of molecules but by phenotypic variations among individuals and can be interpreted as individual tolerances. The expression of tolerance is the result of many genetic and environmental factors and thus can be considered a random variable. In consequence, the shape of its associated dose-response curve has no physicochemical bearings; instead, they are originated from random biological variations. Due to the randomness of tolerance there is no reason to use deterministic equations for its analysis; on the contrary, statistical models are the appropriate tools for analyzing these dose-response relations. PMID:26952004

  13. A computational model-based validation of Guyton's analysis of cardiac output and venous return curves

    NASA Technical Reports Server (NTRS)

    Mukkamala, R.; Cohen, R. J.; Mark, R. G.

    2002-01-01

    Guyton developed a popular approach for understanding the factors responsible for cardiac output (CO) regulation in which 1) the heart-lung unit and systemic circulation are independently characterized via CO and venous return (VR) curves, and 2) average CO and right atrial pressure (RAP) of the intact circulation are predicted by graphically intersecting the curves. However, this approach is virtually impossible to verify experimentally. We theoretically evaluated the approach with respect to a nonlinear, computational model of the pulsatile heart and circulation. We developed two sets of open circulation models to generate CO and VR curves, differing by the manner in which average RAP was varied. One set applied constant RAPs, while the other set applied pulsatile RAPs. Accurate prediction of intact, average CO and RAP was achieved only by intersecting the CO and VR curves generated with pulsatile RAPs because of the pulsatility and nonlinearity (e.g., systemic venous collapse) of the intact model. The CO and VR curves generated with pulsatile RAPs were also practically independent. This theoretical study therefore supports the validity of Guyton's graphical analysis.

  14. Analysis of the nonlinear dynamics of a 2-axle freight wagon in curves

    NASA Astrophysics Data System (ADS)

    Di Gialleonardo, Egidio; Bruni, Stefano; True, Hans

    2014-01-01

    This paper deals with the study of the nonlinear dynamic behaviour of 2-axle freight wagons in curves, considering the case of one single wagon (neglecting inter-car coupling forces) and of multiple wagons interacting through the buffers and the couplers. A multi-body model of a single wagon and of a three-car assembly is introduced, paying particular attention to the nonlinear and nonsmooth modelling of the suspensions and of the inter-car coupling elements. Using this model, a numerical analysis of the steady-state solution reached after the negotiation of curve transition is presented and bifurcations are identified for some particular values of the curve radius. For the single car case, it is shown that depending on the curve radius and the vehicle speed the carbody may experience severe periodic oscillations at speeds lying in the operating range of the vehicle. For the car-assembly case, it is shown that the coupling forces exchanged by the wagons significantly affect their dynamics in a curve, reducing the amplitude of vibration.

  15. Analytical Problems and Suggestions in the Analysis of Behavioral Economic Demand Curves.

    PubMed

    Yu, Jihnhee; Liu, Liu; Collins, R Lorraine; Vincent, Paula C; Epstein, Leonard H

    2014-01-01

    Behavioral economic demand curves (Hursh, Raslear, Shurtleff, Bauman, & Simmons, 1988) are innovative approaches to characterize the relationships between consumption of a substance and its price. In this article, we investigate common analytical issues in the use of behavioral economic demand curves, which can cause inconsistent interpretations of demand curves, and then we provide methodological suggestions to address those analytical issues. We first demonstrate that log transformation with different added values for handling zeros changes model parameter estimates dramatically. Second, demand curves are often analyzed using an overparameterized model that results in an inefficient use of the available data and a lack of assessment of the variability among individuals. To address these issues, we apply a nonlinear mixed effects model based on multivariate error structures that has not been used previously to analyze behavioral economic demand curves in the literature. We also propose analytical formulas for the relevant standard errors of derived values such as P max, O max, and elasticity. The proposed model stabilizes the derived values regardless of using different added increments and provides substantially smaller standard errors. We illustrate the data analysis procedure using data from a relative reinforcement efficacy study of simulated marijuana purchasing. PMID:26741176

  16. Learning Factors Transfer Analysis: Using Learning Curve Analysis to Automatically Generate Domain Models

    ERIC Educational Resources Information Center

    Pavlik, Philip I. Jr.; Cen, Hao; Koedinger, Kenneth R.

    2009-01-01

    This paper describes a novel method to create a quantitative model of an educational content domain of related practice item-types using learning curves. By using a pairwise test to search for the relationships between learning curves for these item-types, we show how the test results in a set of pairwise transfer relationships that can be…

  17. ATWS Analysis with an Advanced Boiling Curve Approach within COBRA 3-CP

    SciTech Connect

    Gensler, A.; Knoll, A.; Kuehnel, K.

    2007-07-01

    In 2005 the German Reactor Safety Commission issued specific requirements on core coolability demonstration for PWR ATWS (anticipated transients without scram). Thereupon AREVA NP performed detailed analyses for all German PWRs. For a German KONVOI plant the results of an ATWS licensing analysis are presented. The plant dynamic behavior is calculated with NLOOP, while the hot channel analysis is performed with the thermal hydraulic computer code COBRA 3-CP. The application of the fuel rod model included in COBRA 3-CP is essential for this type of analysis. Since DNB (departure from nucleate boiling) occurs, the advanced post DNB model (advanced boiling curve approach) of COBRA 3-CP is used. The results are compared with those gained with the standard BEEST model. The analyzed ATWS case is the emergency power case 'loss of main heat sink with station service power supply unavailable'. Due to the decreasing coolant flow rate during the transient the core attains film boiling conditions. The results of the hot channel analysis strongly depend on the performance of the boiling curve model. The BEEST model is based on pool boiling conditions whereas typical PWR conditions - even in most transients - are characterized by forced flow for which the advanced boiling curve approach is particularly suitable. Compared with the BEEST model the advanced boiling curve approach in COBRA 3-CP yields earlier rewetting, i.e. a shorter period in film boiling. Consequently, the fuel rod cladding temperatures, that increase significantly due to film boiling, drop back earlier and the high temperature oxidation is significantly diminished. The Baker-Just-Correlation was used to calculate the value of equivalent cladding reacted (ECR), i.e. the reduction of cladding thickness due to corrosion throughout the transient. Based on the BEEST model the ECR value amounts to 0.4% whereas the advanced boiling curve only leads to an ECR value of 0.2%. Both values provide large margins to the 17

  18. Better P-curves: Making P-curve analysis more robust to errors, fraud, and ambitious P-hacking, a Reply to Ulrich and Miller (2015).

    PubMed

    Simonsohn, Uri; Simmons, Joseph P; Nelson, Leif D

    2015-12-01

    When studies examine true effects, they generate right-skewed p-curves, distributions of statistically significant results with more low (.01 s) than high (.04 s) p values. What else can cause a right-skewed p-curve? First, we consider the possibility that researchers report only the smallest significant p value (as conjectured by Ulrich & Miller, 2015), concluding that it is a very uncommon problem. We then consider more common problems, including (a) p-curvers selecting the wrong p values, (b) fake data, (c) honest errors, and (d) ambitiously p-hacked (beyond p < .05) results. We evaluate the impact of these common problems on the validity of p-curve analysis, and provide practical solutions that substantially increase its robustness. PMID:26595842

  19. Better P-curves: Making P-curve analysis more robust to errors, fraud, and ambitious P-hacking, a Reply to Ulrich and Miller (2015).

    PubMed

    Simonsohn, Uri; Simmons, Joseph P; Nelson, Leif D

    2015-12-01

    When studies examine true effects, they generate right-skewed p-curves, distributions of statistically significant results with more low (.01 s) than high (.04 s) p values. What else can cause a right-skewed p-curve? First, we consider the possibility that researchers report only the smallest significant p value (as conjectured by Ulrich & Miller, 2015), concluding that it is a very uncommon problem. We then consider more common problems, including (a) p-curvers selecting the wrong p values, (b) fake data, (c) honest errors, and (d) ambitiously p-hacked (beyond p < .05) results. We evaluate the impact of these common problems on the validity of p-curve analysis, and provide practical solutions that substantially increase its robustness.

  20. Robot-assisted laparoscopic prostatectomy: analysis of an experienced open surgeon's learning curve after 300 procedures.

    PubMed

    Doumerc, Nicolas; Yuen, Carlo; Savdie, Richard; Rahman, Md Bayzidur; Pe Benito, Ruth; Stricker, Phillip

    2010-01-01

    To critically analyse the learning curve for a single experienced open surgeon converting to robotic surgery. From February 2006 to July 2009, 300 patients underwent a robot-assisted laparoscopic prostatectomy (RALP) by a single urologist. This study is a prospective analysis of the baseline patient and tumour characteristics, intraoperative and postoperative data, and histopathologic features. To analyse the RALP learning curve, the joinpoint regression method was used. Mean age of the patient was 61.3 years (range 46-76). Mean pre-operative PSA level was 7 ng/ml (range 0.7-41), and follow-up was 14 months (0.7-41). The mean operating time was 185 min (range 119-525). One hundred and ten cases were required to achieve 3-h proficiency. There were no conversions. The mean hospital stay was 2.8 days (range 2-7). Major complications rate was 1.3%. The blood transfusion rate was 0.6%. The overall positive surgical margin (PSM) rate was 21.3%. pT2 and pT3 PSM rate was 10 and 44%, respectively. The joinpoint regression method showed that the learning curve started to plateau for the overall PSM rate after 205 cases (95% CI 200-249). For pT2 and pT3, PSM rate, the learning curve tended to flatten after 130 and 170 cases, respectively. The analysis of an experienced open surgeon learning curve in transferring his skills to the robotic platform has shown that 3-h proficiency requires 110 cases. The overall, pT2, and pT3 PSM rate take approximately 200, 130, and 170 cases, respectively, to flatten. PMID:27628635

  1. Nonlinear calibration curves in secondary ion mass spectrometry for quantitative analysis of gesi heterostructures with nanoclusters

    NASA Astrophysics Data System (ADS)

    Drozdov, M. N.; Drozdov, Yu. N.; Novikov, A. V.; Yunin, P. A.; Yurasov, D. V.

    2016-03-01

    For the first time in the practice of secondary ion mass spectrometry, we obtained a nonlinear calibration curve for the ratio of the cluster and elementary secondary ions of germanium Ge2/Ge without secondary ions of silicon, which enables the quantification of germanium in Ge x Si1- x heterostructures in the entire range of 0 < x ≤ 1. We developed a method for quantitative lateral analysis based on the plotting of a lateral map of x. An algorithm to identify and analyze the lateral heterogeneity of x in Ge x Si1- x heterostructures with 3D clusters by comparing the results of depth profiling analysis, obtained using linear and nonlinear calibration curves, is developed, and concentration x in the self-assembled nanoislands is determined.

  2. Mathematical analysis of the heart rate performance curve during incremental exercise testing.

    PubMed

    Rosic, G; Pantovic, S; Niciforovic, J; Colovic, V; Rankovic, V; Obradovic, Z; Rosic, Mirko

    2011-03-01

    In this study we performed laboratory treadmill protocols of increasing load. Heart rate was continuously recorded and blood lactate concentration was measured for determination of lactate threshold by means of LTD-max and LT4.0 methods.Our results indicate that the shape of heart rate performance curve (HRPC) during incremental testing depends on the applied exercise protocol (change of initial speed and the step of running speed increase, with the constant stage duration). Depending on the applied protocol, the HRPC can be described by linear, polynomial (S-shaped), and exponential mathematical expression.We presented mathematical procedure for estimation of heart rate threshold points at the level of LTD-max and LT4.0, by means of exponential curve and its relative deflection from the initial trend line (tangent line to exponential curve at the point of starting heart rate). The relative deflection of exponential curve from the initial trend line at the level of LTD-max and/or LT4.0 can be defined, based on the slope of the initial trend line. Using originally developed software that allows mathematical analysis of heart rate-load relation, LTD-max and/or LT4.0 can be estimated without direct measurement of blood lactate concentration.

  3. Improving Accuracy and Temporal Resolution of Learning Curve Estimation for within- and across-Session Analysis

    PubMed Central

    Tabelow, Karsten; König, Reinhard; Polzehl, Jörg

    2016-01-01

    Estimation of learning curves is ubiquitously based on proportions of correct responses within moving trial windows. Thereby, it is tacitly assumed that learning performance is constant within the moving windows, which, however, is often not the case. In the present study we demonstrate that violations of this assumption lead to systematic errors in the analysis of learning curves, and we explored the dependency of these errors on window size, different statistical models, and learning phase. To reduce these errors in the analysis of single-subject data as well as on the population level, we propose adequate statistical methods for the estimation of learning curves and the construction of confidence intervals, trial by trial. Applied to data from an avoidance learning experiment with rodents, these methods revealed performance changes occurring at multiple time scales within and across training sessions which were otherwise obscured in the conventional analysis. Our work shows that the proper assessment of the behavioral dynamics of learning at high temporal resolution can shed new light on specific learning processes, and, thus, allows to refine existing learning concepts. It further disambiguates the interpretation of neurophysiological signal changes recorded during training in relation to learning. PMID:27303809

  4. Light curve solution and orbital period analysis of the contact binary V842 Herculis

    NASA Astrophysics Data System (ADS)

    Selam, S. O.; Albayrak, B.; Şenavci, H. V.; Aksu, O.

    2005-10-01

    New photoelectric BV light curves were obtained for the neglected eclipsing binary V842 Her at the TÜB{İTAK National Observatory (TUG) and studied for the first time in detail to determine the orbital parameters and geometry of the system. The solutions obtained simultaneously for the new light curves and the radial velocity curves in the literature by using the Wilson-Devinney code reveal a typical W-type contact system. The light curves exhibit the so-called O'Connell effect which the level of the primary maxima being higher than that of the secondary ones in both pass-bands. The O'Connell effect in the light curves is explained in terms of a dark-spot located on the more massive component which makes the more massive larger component slightly cooler than the less massive smaller one. The O-C diagram constructed for all available times of minima of V842 Her exhibits a cyclic character superimposed on a quadratic variation. The quadratic character yields a orbital period increase with a rate of dP/dt=7.76×10-7 days yr-1 which can be attributed to the mass exchange/loss mechanism in the system. By assuming the presence of a gravitationally bound third body in the system, the analysis of the cyclic nature in the O-C diagram revealed a third body with mass of 0.4M\\sun orbiting around the eclipsing pair. The possibility of magnetic activity cycle effect as a cause for the observed cyclic variation in the O-C diagram was also discussed.

  5. Bayesian analysis of stage-fall-discharge rating curves and their uncertainties

    NASA Astrophysics Data System (ADS)

    Mansanarez, Valentin; Le Coz, Jérôme; Renard, Benjamin; Lang, Michel; Pierrefeu, Gilles; Le Boursicaud, Raphaël; Pobanz, Karine

    2016-04-01

    Stage-fall-discharge (SFD) rating curves are traditionally used to compute streamflow records at sites where the energy slope of the flow is variable due to variable backwater effects. Building on existing Bayesian approaches, we introduce an original hydraulics-based method for developing SFD rating curves used at twin gauge stations and estimating their uncertainties. Conventional power functions for channel and section controls are used, and transition to a backwater-affected channel control is computed based on a continuity condition, solved either analytically or numerically. The difference between the reference levels at the two stations is estimated as another uncertain parameter of the SFD model. The method proposed in this presentation incorporates information from both the hydraulic knowledge (equations of channel or section controls) and the information available in the stage-fall-discharge observations (gauging data). The obtained total uncertainty combines the parametric uncertainty and the remnant uncertainty related to the model of rating curve. This method provides a direct estimation of the physical inputs of the rating curve (roughness, width, slope bed, distance between twin gauges, etc.). The performance of the new method is tested using an application case affected by the variable backwater of a run-of-the-river dam: the Rhône river at Valence, France. In particular, a sensitivity analysis to the prior information and to the gauging dataset is performed. At that site, the stage-fall-discharge domain is well documented with gaugings conducted over a range of backwater affected and unaffected conditions. The performance of the new model was deemed to be satisfactory. Notably, transition to uniform flow when the overall range of the auxiliary stage is gauged is correctly simulated. The resulting curves are in good agreement with the observations (gaugings) and their uncertainty envelopes are acceptable for computing streamflow records. Similar

  6. Robust mean traveltime curves: a powerful tool for analysis in 2D transmission tomographic surveys

    NASA Astrophysics Data System (ADS)

    Fernandez Martinez, J.; Pedruelo Gonzalez, L.; Rector, J.

    2008-12-01

    Acoustic tomography methods belong to the class of non destructive inspection techniques and are widely used in engineering applications. One of the main issues for these methods is the direct arrivals, which can be noisy or affected by scattering or other propagation effects. Mean traveltime curves (mean and standard deviation) have been introduced by Fernández Martínez et al (2006), and describe the variation of the main statistical parameters of the traveltime distribution for the different gathering subsets as a function of the gather index. These curves constitute a simple methodology (Fernández Martínez et al., 2008) to analyze before inversion the traveltime quality in 2D acoustic transmission tomography experiments conducted in relatively homogeneous blocks. This analysis can help to discriminate the contribution of picking errors from that of geological heterogeneities. In this contribution we present the so-called robust mean traveltime curves, which refer to the variation of the different p-percentiles and related measures of dispersion (inter-quartile range and minimum absolute deviation) for the above mentioned gathering subsets. Together with the mean curve, the median and upper-quartile traveltime curves are very resistant to the presence of outliers, and thus, are preferred to infer a background velocity model, which is valid at experiment scale and honors the experimental traveltime distribution. This methodology is valid for 2D zonal isotropic or elliptical anisotropic media, explored via any arbitrary acquisition geometry. We show the application to a well-known granitic medium (Febex Project, Nagra, Switzerland). Fernández Martínez et al. 2006. Mathematical Geology:38-3.343-374 Fernández Martínez et al.2008. Computer and Geosciences:34-3,213-225, 2008.

  7. Fragmentation pathways analysis for the gas phase dissociation of protonated carnosine-oxaliplatin complexes.

    PubMed

    Ritacco, Ida; Moustafa, Eslam M; Sicilia, Emilia; Russo, Nino; Shoeib, Tamer

    2015-03-14

    Collision-induced dissociation (CID) experiments on the protonated carnosine-oxaliplatin complex, [Carnosine + OxPt + H](+) using several collision energies were shown to yield nine different fragment ions. Energy-resolved CID experiments on [Carnosine + OxPt + H](+) showed that the generation of the product ion [Carnosine - H + Pt(dach)](+) (where dach is 1,2-diaminocyclohexane) is the lowest energy process. At slightly higher collision energies, the loss of neutral carnosine from [Carnosine + OxPt + H](+) to produce [OxPt + H](+) was observed, followed by the loss of oxaliplatin from the same precursor ion to produce [Carnosine + H](+). At significantly higher energies, the ion [OxPt - CO2 + H](+) was shown to be formed, while the last two investigated ions [Carnosine + OxPt - CO2 + H](+) and [Carnosine - NH3 - H + Pt(dach)](+) did not attain any significant relative abundance. Density functional calculations at the B3LYP/LANL2DZ level were employed to probe the fragmentation mechanisms that account for all experimental data. The lowest free energy barriers for the generation of each of the ions [Carnosine - H + Pt(dach)](+), [OxPt + H](+), [Carnosine + H](+), [Carnosine + OxPt - CO2 + H](+) and [Carnosine - NH3 - H + Pt(dach)](+) from [Carnosine + OxPt + H](+) according to the fragmentation mechanisms offered here were calculated to be 31.9, 38.8, 49.3, 75.2, and 85.6 kcal mol(-1), respectively. PMID:25325236

  8. Diagnostic accuracy and receiver-operating characteristics curve analysis in surgical research and decision making.

    PubMed

    Søreide, Kjetil; Kørner, Hartwig; Søreide, Jon Arne

    2011-01-01

    In surgical research, the ability to correctly classify one type of condition or specific outcome from another is of great importance for variables influencing clinical decision making. Receiver-operating characteristic (ROC) curve analysis is a useful tool in assessing the diagnostic accuracy of any variable with a continuous spectrum of results. In order to rule a disease state in or out with a given test, the test results are usually binary, with arbitrarily chosen cut-offs for defining disease versus health, or for grading of disease severity. In the postgenomic era, the translation from bench-to-bedside of biomarkers in various tissues and body fluids requires appropriate tools for analysis. In contrast to predetermining a cut-off value to define disease, the advantages of applying ROC analysis include the ability to test diagnostic accuracy across the entire range of variable scores and test outcomes. In addition, ROC analysis can easily examine visual and statistical comparisons across tests or scores. ROC is also favored because it is thought to be independent from the prevalence of the condition under investigation. ROC analysis is used in various surgical settings and across disciplines, including cancer research, biomarker assessment, imaging evaluation, and assessment of risk scores.With appropriate use, ROC curves may help identify the most appropriate cutoff value for clinical and surgical decision making and avoid confounding effects seen with subjective ratings. ROC curve results should always be put in perspective, because a good classifier does not guarantee the expected clinical outcome. In this review, we discuss the fundamental roles, suggested presentation, potential biases, and interpretation of ROC analysis in surgical research.

  9. Updated UBV Light-Curve and Period Analysis of Eclipsing Binary HS Herculis

    NASA Astrophysics Data System (ADS)

    Bozkurt, Zeynep; Değirmenci, Ömer Lütfi

    2006-08-01

    UBV light-curves of the eclipsing binary HS Herculis, obtained in 2002 2003 observational seasons, were analysed with Wilson-Devinney computer code. New absolute dimensions of the system were calculated using the results of the light-curve analysis. Period variation of the system was also investigated. Several new times of minima have been secured for this problematic system. An apsidal motion with a period of 80.7 years was confirmed and a third body in a pretty eccentric orbit (e 3 = 0.90 ± 0.08) with a period of 85.4 years was found. The corresponding internal structure constants of the binary system, log k 2, and the mass of the third body were derived.

  10. Updated UBV Light-Curve and Period Analysis of Eclipsing Binary HS Herculis

    NASA Astrophysics Data System (ADS)

    Bozkurt, Zeynep; Değirmenci, Ömer Lütfi

    2006-08-01

    UBV light-curves of the eclipsing binary HS Herculis, which obtained in 2002--2003 observational seasons, were analysed with Wilson-Devinney computer code. New absolute dimensions of the system were calculated using the results of the light-curve analysis. Period variation of the system also investigated. Several new times of minima have been secured for this problematic system. An apsidal motion with the period of 80.7 years was confirmed and a third body in an pretty eccentric orbit (e 3 = 0.90 ± 0.08) with a period of 85.4 years was found. The corresponding internal structure constants of the binary system, log k 2, and mass of third body were derived.

  11. Consequence analysis to determine the damage to humans from vapour cloud explosions using characteristic curves.

    PubMed

    Alonso, Fernando Díaz; Ferradás, Enrique González; Sánchez, Teresa de Jesús Jiménez; Aznar, Agustín Miñana; Gimeno, José Ruiz; Alonso, Jesús Martínez

    2008-01-15

    The aim of this paper is to provide a methodology to facilitate consequence analysis for vapour cloud explosions (VCE). Firstly, the main PROBIT equations to evaluate direct damage on humans from those accidents (eardrum rupture, death due to skull fracture, death due to whole body impact and lung damage) are discussed and the most suitable ones are selected. Secondly, a new methodology is developed to relate characteristic overpressure-impulse-distance curves for VCE, obtained in a previous paper (F. Diaz Alonso et al., Characteristic overpressure-impulse-distance curves for vapour cloud explosions using the TNO Multi-Energy model, J. Hazard. Mater. A137 (2006) 734-741) with the selected PROBIT equations. This methodology allows the determination of damage as a function of distance to the accident's origin in only one step, using explosion energy and VCE Multi-Energy charge strength as input parameters.

  12. Ice shelf structure derived from dispersion curve analysis of ambient seismic noise, Ross Ice Shelf, Antarctica

    NASA Astrophysics Data System (ADS)

    Diez, A.; Bromirski, P. D.; Gerstoft, P.; Stephen, R. A.; Anthony, R. E.; Aster, R. C.; Cai, C.; Nyblade, A.; Wiens, D. A.

    2016-05-01

    An L-configured, three-component short period seismic array was deployed on the Ross Ice Shelf, Antarctica during November 2014. Polarization analysis of ambient noise data from these stations shows linearly polarized waves for frequency bands between 0.2 and 2 Hz. A spectral peak at about 1.6 Hz is interpreted as the resonance frequency of the water column and is used to estimate the water layer thickness below the ice shelf. The frequency band from 4 to 18 Hz is dominated by Rayleigh and Love waves propagating from the north that, based on daily temporal variations, we conclude were generated by field camp activity. Frequency-slowness plots were calculated using beamforming. Resulting Love and Rayleigh wave dispersion curves were inverted for the shear wave velocity profile within the firn and ice to ˜150 m depth. The derived density profile allows estimation of the pore close-off depth and the firn-air content thickness. Separate inversions of Rayleigh and Love wave dispersion curves give different shear wave velocity profiles within the firn. We attribute this difference to an effective anisotropy due to fine layering. The layered structure of firn, ice, water and the seafloor results in a characteristic dispersion curve below 7 Hz. Forward modelling the observed Rayleigh wave dispersion curves using representative firn, ice, water and sediment structures indicates that Rayleigh waves are observed when wavelengths are long enough to span the distance from the ice shelf surface to the seafloor. The forward modelling shows that analysis of seismic data from an ice shelf provides the possibility of resolving ice shelf thickness, water column thickness and the physical properties of the ice shelf and underlying seafloor using passive-source seismic data.

  13. Fluorescence quenching analysis of the association and dissociation of a diarylheterocycle to cyclooxygenase-1 and cyclooxygenase-2: dynamic basis of cyclooxygenase-2 selectivity.

    PubMed

    Lanzo, C A; Sutin, J; Rowlinson, S; Talley, J; Marnett, L J

    2000-05-23

    Cyclooxygenase-1 (COX-1) and cyclooxygenase-2 (COX-2) are the enzymes responsible for the biosynthesis of the precursor to the biologically active prostaglandins, prostacyclin, and thromboxane and are the molecular targets for nonsteroidal antiinflammatory drugs (NSAIDs). Selective COX-2 inhibitors are antiinflammatory and analgesic but lack gastrointestinal toxicity, an undesirable side effect attributed to COX-1 inhibition. Crystallographic analysis of selective COX inhibitors complexed with either isoform provides some information about the molecular determinants of selectivity but does not provide information about the dynamics of inhibitor association/dissociation. We employed rapid-mixing techniques and fluorescence quenching to monitor the association and dissociation of a selective COX-2 inhibitor to COX-1 or COX-2. The association of the fluorescent diaryloxazole, SC299, with both enzymes occurs in a time-dependent fashion. Its binding to COX-2 occurs in three kinetically distinct steps whereas its binding to COX-1 occurs in two steps. In contrast to the relatively rapid association of SC299 with both enzymes, its dissociation from COX-2 is quite slow and occurs over several hours whereas the dissociation from COX-1 is complete in less than 1 min. The selectivity of SC299 as a COX-2 inhibitor correlates to its relative rates of dissociation from the two COX isoforms. A model is proposed for diarylheterocycle binding to COX's that integrates these kinetic data with available structural information.

  14. Item parameters dissociate between expectation formats: a regression analysis of time-frequency decomposed EEG data

    PubMed Central

    Monsalve, Irene F.; Pérez, Alejandro; Molinaro, Nicola

    2014-01-01

    During language comprehension, semantic contextual information is used to generate expectations about upcoming items. This has been commonly studied through the N400 event-related potential (ERP), as a measure of facilitated lexical retrieval. However, the associative relationships in multi-word expressions (MWE) may enable the generation of a categorical expectation, leading to lexical retrieval before target word onset. Processing of the target word would thus reflect a target-identification mechanism, possibly indexed by a P3 ERP component. However, given their time overlap (200–500 ms post-stimulus onset), differentiating between N400/P3 ERP responses (averaged over multiple linguistically variable trials) is problematic. In the present study, we analyzed EEG data from a previous experiment, which compared ERP responses to highly expected words that were placed either in a MWE or a regular non-fixed compositional context, and to low predictability controls. We focused on oscillatory dynamics and regression analyses, in order to dissociate between the two contexts by modeling the electrophysiological response as a function of item-level parameters. A significant interaction between word position and condition was found in the regression model for power in a theta range (~7–9 Hz), providing evidence for the presence of qualitative differences between conditions. Power levels within this band were lower for MWE than compositional contexts when the target word appeared later on in the sentence, confirming that in the former lexical retrieval would have taken place before word onset. On the other hand, gamma-power (~50–70 Hz) was also modulated by predictability of the item in all conditions, which is interpreted as an index of a similar “matching” sub-step for both types of contexts, binding an expected representation and the external input. PMID:25161630

  15. 3D combinational curves for accuracy and performance analysis of positive biometrics identification

    NASA Astrophysics Data System (ADS)

    Du, Yingzi; Chang, Chein-I.

    2008-06-01

    The receiver operating characteristic (ROC) curve has been widely used as an evaluation criterion to measure the accuracy of biometrics system. Unfortunately, such an ROC curve provides no indication of the optimum threshold and cost function. In this paper, two kinds of 3D combinational curves are proposed: the 3D combinational accuracy curve and the 3D combinational performance curve. The 3D combinational accuracy curve gives a balanced view of the relationships among FAR (false alarm rate), FRR (false rejection rate), threshold t, and Cost. Six 2D curves can be derived from the 3D combinational accuracy curve: the conventional 2D ROC curve, 2D curve of (FRR, t), 2D curve of (FAR, t), 2D curve of (FRR, Cost), 2D curve of (FAR, Cost), and 2D curve of ( t, Cost). The 3D combinational performance curve can be derived from the 3D combinational accuracy curve which can give a balanced view among Security, Convenience, threshold t, and Cost. The advantages of using the proposed 3D combinational curves are demonstrated by iris recognition systems where the experimental results show that the proposed 3D combinational curves can provide more comprehensive information of the system accuracy and performance.

  16. Two-temperature models for nitrogen dissociation

    NASA Astrophysics Data System (ADS)

    da Silva, M. Lino; Guerra, V.; Loureiro, J.

    2007-12-01

    Accurate sets of nitrogen state-resolved dissociation rates have been reduced to two-temperature (translational T and vibrational Tv) dissociation rates. The analysis of such two-temperature dissociation rates shows evidence of two different dissociation behaviors. For Tv < 0.3 T dissociation proceeds predominantly from the lower-lying vibrational levels, whereas for Tv > 0.3 T dissociation proceeds predominantly form the near-dissociative vibrational levels, with an abrupt change of behavior at Tv = 0.3 T. These two-temperature sets have then been utilized as a benchmark for the comparison against popular multitemperature dissociation models (Park, Hansen, Marrone-Treanor, Hammerling, Losev-Shatalov, Gordiets, Kuznetsov, and Macheret-Fridman). This has allowed verifying the accuracy of each theoretical model, and additionally proposing adequate values for any semi-empirical parameters present in the different theories. The Macheret-Fridman model, who acknowledges the existence of the two aforementioned dissociation regimes, has been found to provide significantly more accurate results than the other models. Although these different theoretical approaches have been tested and validated solely for nitrogen dissociation processes, it is reasonable to expect that the general conclusions of this work, regarding the adequacy of the different dissociation models, could be extended to the description of arbitrary diatomic dissociation processes.

  17. Improved protocol for rapid identification of certain spa types using high resolution melting curve analysis.

    PubMed

    Mayerhofer, Benjamin; Stöger, Anna; Pietzka, Ariane T; Fernandez, Haizpea Lasa; Prewein, Bernhard; Sorschag, Sieglinde; Kunert, Renate; Allerberger, Franz; Ruppitsch, Werner

    2015-01-01

    Methicillin-resistant Staphylococcus aureus is one of the most significant pathogens associated with health care. For efficient surveillance, control and outbreak investigation, S. aureus typing is essential. A high resolution melting curve analysis was developed and evaluated for rapid identification of the most frequent spa types found in an Austrian hospital consortium covering 2,435 beds. Among 557 methicillin-resistant Staphylococcus aureus isolates 38 different spa types were identified by sequence analysis of the hypervariable region X of the protein A gene (spa). Identification of spa types through their characteristic high resolution melting curve profiles was considerably improved by double spiking with genomic DNA from spa type t030 and spa type t003 and allowed unambiguous and fast identification of the ten most frequent spa types t001 (58%), t003 (12%), t190 (9%), t041 (5%), t022 (2%), t032 (2%), t008 (2%), t002 (1%), t5712 (1%) and t2203 (1%), representing 93% of all isolates within this hospital consortium. The performance of the assay was evaluated by testing samples with unknown spa types from the daily routine and by testing three different high resolution melting curve analysis real-time PCR instruments. The ten most frequent spa types were identified from all samples and on all instruments with 100% specificity and 100% sensitivity. Compared to classical spa typing by sequence analysis, this gene scanning assay is faster, cheaper and can be performed in a single closed tube assay format. Therefore it is an optimal screening tool to detect the most frequent endemic spa types and to exclude non-endemic spa types within a hospital. PMID:25768007

  18. Improved protocol for rapid identification of certain spa types using high resolution melting curve analysis.

    PubMed

    Mayerhofer, Benjamin; Stöger, Anna; Pietzka, Ariane T; Fernandez, Haizpea Lasa; Prewein, Bernhard; Sorschag, Sieglinde; Kunert, Renate; Allerberger, Franz; Ruppitsch, Werner

    2015-01-01

    Methicillin-resistant Staphylococcus aureus is one of the most significant pathogens associated with health care. For efficient surveillance, control and outbreak investigation, S. aureus typing is essential. A high resolution melting curve analysis was developed and evaluated for rapid identification of the most frequent spa types found in an Austrian hospital consortium covering 2,435 beds. Among 557 methicillin-resistant Staphylococcus aureus isolates 38 different spa types were identified by sequence analysis of the hypervariable region X of the protein A gene (spa). Identification of spa types through their characteristic high resolution melting curve profiles was considerably improved by double spiking with genomic DNA from spa type t030 and spa type t003 and allowed unambiguous and fast identification of the ten most frequent spa types t001 (58%), t003 (12%), t190 (9%), t041 (5%), t022 (2%), t032 (2%), t008 (2%), t002 (1%), t5712 (1%) and t2203 (1%), representing 93% of all isolates within this hospital consortium. The performance of the assay was evaluated by testing samples with unknown spa types from the daily routine and by testing three different high resolution melting curve analysis real-time PCR instruments. The ten most frequent spa types were identified from all samples and on all instruments with 100% specificity and 100% sensitivity. Compared to classical spa typing by sequence analysis, this gene scanning assay is faster, cheaper and can be performed in a single closed tube assay format. Therefore it is an optimal screening tool to detect the most frequent endemic spa types and to exclude non-endemic spa types within a hospital.

  19. Spectrophotometric analysis of gamma-ray burst afterglow extinction curves with X-Shooter

    NASA Astrophysics Data System (ADS)

    Japelj, J.; Covino, S.; Gomboc, A.; Vergani, S. D.; Goldoni, P.; Selsing, J.; Cano, Z.; D'Elia, V.; Flores, H.; Fynbo, J. P. U.; Hammer, F.; Hjorth, J.; Jakobsson, P.; Kaper, L.; Kopač, D.; Krühler, T.; Melandri, A.; Piranomonte, S.; Sánchez-Ramírez, R.; Tagliaferri, G.; Tanvir, N. R.; de Ugarte Postigo, A.; Watson, D.; Wijers, R. A. M. J.

    2015-07-01

    We use gamma-ray burst (GRB) afterglow spectra observed with the VLT/X-Shooter spectrograph to measure rest-frame extinction in GRB lines-of-sight by modelling the broadband near-infrared (NIR) to X-ray afterglow spectral energy distributions (SEDs). Our sample consists of nine Swift GRBs, of which eight belong to the long-duration and one to the short-duration class. Dust is modelled using the average extinction curves of the Milky Way and the two Magellanic Clouds. We derive the rest-frame extinction of the entire sample, which fall in the range 0 ≲ AV ≲ 1.2. Moreover, the SMC extinction curve is the preferred extinction curve template for the majority of our sample, a result that is in agreement with those commonly observed in GRB lines of sights. In one analysed case (GRB 120119A), the common extinction curve templates fail to reproduce the observed extinction. To illustrate the advantage of using the high-quality, X-Shooter afterglow SEDs over the photometric SEDs, we repeat the modelling using the broadband SEDs with the NIR-to-UV photometric measurements instead of the spectra. The main result is that the spectroscopic data, thanks to a combination of excellent resolution and coverage of the blue part of the SED, are more successful in constraining extinction curves and therefore dust properties in GRB hosts with respect to photometric measurements. In all cases but one the extinction curve of one template is preferred over the others. We show that themodelled values of the extinction AV and the spectral slope, obtained through spectroscopic and photometric SED analysis, can differ significantly for individual events, though no apparent trend in the differences is observed. Finally we stress that, regardless of the resolution of the optical-to-NIR data, the SED modelling gives reliable results only when the fit is performed on a SED covering a broader spectral region (in our case extending to X-rays). Based on observations collected at the European

  20. Assessing the Classification Accuracy of Early Numeracy Curriculum-Based Measures Using Receiver Operating Characteristic Curve Analysis

    ERIC Educational Resources Information Center

    Laracy, Seth D.; Hojnoski, Robin L.; Dever, Bridget V.

    2016-01-01

    Receiver operating characteristic curve (ROC) analysis was used to investigate the ability of early numeracy curriculum-based measures (EN-CBM) administered in preschool to predict performance below the 25th and 40th percentiles on a quantity discrimination measure in kindergarten. Areas under the curve derived from a sample of 279 students ranged…

  1. On the Analysis and Construction of the Butterfly Curve Using "Mathematica"[R

    ERIC Educational Resources Information Center

    Geum, Y. H.; Kim, Y. I.

    2008-01-01

    The butterfly curve was introduced by Temple H. Fay in 1989 and defined by the polar curve r = e[superscript cos theta] minus 2 cos 4 theta plus sin[superscript 5] (theta divided by 12). In this article, we develop the mathematical model of the butterfly curve and analyse its geometric properties. In addition, we draw the butterfly curve and…

  2. Circular Helix-Like Curve: An Effective Tool of Biological Sequence Analysis and Comparison

    PubMed Central

    Li, Yushuang

    2016-01-01

    This paper constructed a novel injection from a DNA sequence to a 3D graph, named circular helix-like curve (CHC). The presented graphical representation is available for visualizing characterizations of a single DNA sequence and identifying similarities and differences among several DNAs. A 12-dimensional vector extracted from CHC, as a numerical characterization of CHC, was applied to analyze phylogenetic relationships of 11 species, 74 ribosomal RNAs, 48 Hepatitis E viruses, and 18 eutherian mammals, respectively. Successful experiments illustrated that CHC is an effective tool of biological sequence analysis and comparison. PMID:27403205

  3. Circular Helix-Like Curve: An Effective Tool of Biological Sequence Analysis and Comparison.

    PubMed

    Li, Yushuang; Xiao, Wenli

    2016-01-01

    This paper constructed a novel injection from a DNA sequence to a 3D graph, named circular helix-like curve (CHC). The presented graphical representation is available for visualizing characterizations of a single DNA sequence and identifying similarities and differences among several DNAs. A 12-dimensional vector extracted from CHC, as a numerical characterization of CHC, was applied to analyze phylogenetic relationships of 11 species, 74 ribosomal RNAs, 48 Hepatitis E viruses, and 18 eutherian mammals, respectively. Successful experiments illustrated that CHC is an effective tool of biological sequence analysis and comparison. PMID:27403205

  4. [Aging Process of Puer Black Tea Studied by FTIR Spectroscopy Combined with Curve-Fitting Analysis].

    PubMed

    Li, Dong-yu; Shi, You-ming; Yi, Shi Lai

    2015-07-01

    For better determination of the chemical components in the Puer black tea, Fourier transform infrared spectroscopy was used for obtaining vibrational spectra of Puer black tea at different aging time. Fourier transform infrared (FTIR) spectra indicated that the chemical components had change in Puer black tea at different aging time. The leaf of Puer black tea was a complex system, its Fourier transform infrared spectrum showed a total overlap of each absorption spectrum of various components. Each band represented an overall overlap of some characteristic absorption peaks of functional groups in the Puer black tea. In order to explore the change of characteristic absorption peaks of functional groups with aging time, the prediction positions and the number of second peaks in the range of 1900-900 cm(-1) were determined by Fourier self-deconvolution at first, and later the curve fitting analysis was performed in this overlap band. At different aging time of Puer black tea, the wave number of second peaks of amide II, tea polyphenol, pectin and polysaccharides at overlap band were assigned by curve fitting analysis. The second peak at 1520 cm(-1) was characteristic absorption band of amide II, the second peaks of tea polyphenol and pectin appeared at 1278 and 1103 cm(-1) respectively. Two second peaks at 1063 and 1037 cm(-1), corresponds mainly to glucomannan and arabinan. The relative area of these second peaks could be indicated the content of protein, tea polyphenol, pectin and polysaccharides in the Puer black tea. The results of curve fitting analysis showed that the relative area of amide II was increasing first and then decreasing, it indicated the change of protein in Puer black tea. At the same time, the content of tea polyphenol and pectin were decreased with the increase of aging time, but the glucomannan and arabinan were increased in reverse. It explained that the bitter taste was become weak and a sweet taste appeared in the tea with the increase of

  5. An analysis of long-term light curves of four novalike variables.

    NASA Astrophysics Data System (ADS)

    Kraicheva, Z.; Stanishev, V.; Spassovska, I.; Popov, V.

    The long-term light curves of the novalike systems TT Ari, KR Aur, AM Her and MV Lyr, were compiled and analysed in a search for solar-like cyclical behaviour. The frequency analysis shows long-term cyclical modulations of the brightness of the stars, which can be ascribed to changes of the radii of the late type secondaries of the order of ΔR/R ≅ 10-4 - 10-5. Periods of about 250 - 400 days are also suspected for all systems studied here.

  6. Analyzing Multiple-Choice Questions by Model Analysis and Item Response Curves

    NASA Astrophysics Data System (ADS)

    Wattanakasiwich, P.; Ananta, S.

    2010-07-01

    In physics education research, the main goal is to improve physics teaching so that most students understand physics conceptually and be able to apply concepts in solving problems. Therefore many multiple-choice instruments were developed to probe students' conceptual understanding in various topics. Two techniques including model analysis and item response curves were used to analyze students' responses from Force and Motion Conceptual Evaluation (FMCE). For this study FMCE data from more than 1000 students at Chiang Mai University were collected over the past three years. With model analysis, we can obtain students' alternative knowledge and the probabilities for students to use such knowledge in a range of equivalent contexts. The model analysis consists of two algorithms—concentration factor and model estimation. This paper only presents results from using the model estimation algorithm to obtain a model plot. The plot helps to identify a class model state whether it is in the misconception region or not. Item response curve (IRC) derived from item response theory is a plot between percentages of students selecting a particular choice versus their total score. Pros and cons of both techniques are compared and discussed.

  7. Asymptotic analysis of a newtonian fluid in a curved pipe with moving walls

    NASA Astrophysics Data System (ADS)

    Castiñeira, Gonzalo; Rodríguez, José M.

    2016-06-01

    This communication is devoted to the presentation of our recent results regarding the asymptotic analysis of a viscous flow in a tube with elastic walls. This study can be applied, for example, to the blood flow in an artery. With this aim, we consider the dynamic problem of the incompressible flow of a viscous fluid through a curved pipe with a smooth central curve. Our analysis leads to the obtention of an one dimensional model via singular perturbation of the Navier-Stokes system as ɛ, a non dimensional parameter related to the radius of cross-section of the tube, tends to zero. We allow the radius depend on tangential direction and time, so a coupling with an elastic or viscoelastic law on the wall of the pipe is possible. To perform the asymptotic analysis, we do a change of variable to a reference domain where we assume the existence of asymptotic expansions on ɛ for both velocity and pressure which, upon substitution on Navier-Stokes equations, leads to the characterization of various terms of the expansion. This allows us to obtain an approximation of the solution of the Navier-Stokes equations.

  8. Composite beam analysis linear analysis of naturally curved and twisted anisotropic beams

    NASA Astrophysics Data System (ADS)

    Borri, Marco; Ghiringhelli, Gian L.; Merlini, Teodoro

    1992-05-01

    The aim of this report is to present a consistent theory for the deformation of a naturally curved and twisted anisotropic beam. The proposed formulation naturally extends the classical Saint-Venant approach to the case of curved and twisted anisotropic beams. The mathematical model developed under the assumption of span-wise uniform cross-section, curvature and twist, can take into account any kind of elastic coupling due to the material properties and the curved geometry. The consistency of the presented math-model and its generality about the cross-sectional shape, make it a useful tool even in a preliminary design optimization context such as the aeroelastic tailoring of helicopter rotor blades. The advantage of the present procedure is that it only requires a two-dimensional discretization; thus, very detailed analyses can be performed and interlaminar stresses between laminae can be evaluated. Such analyses would be extremely time consuming if performed with standard finite element codes: that prevents their recursive use as for example when optimizing a beam design. Moreover, as a byproduct of the proposed formulation, one obtains the constitutive law of the cross-section in terms of stress resultant and moment and their conjugate strain measures. This constitutive law takes into account any kind of elastic couplings, e.g., torsion-tension, tension-shear, bending-shear, and constitutes a fundamental input in aeroelastic analyses of helicopter blades. Four simple examples are given in order to show the principal features of the method.

  9. Tectonic and kinematics of curved orogenic systems: insights from AMS analysis and paleomagnetism

    NASA Astrophysics Data System (ADS)

    Cifelli, Francesca; Mattei, Massimo

    2016-04-01

    During the past few years, paleomagnetism has been considered a unique tool for constraining kinematic models of curved orogenic systems, because of its great potential in quantifying vertical axis rotations and in discriminating between primary and secondary (orocline s.l.) arcs. In fact, based on the spatio-temporal relationships between deformation and vertical axis rotation, curved orogens can be subdivided as primary or secondary (oroclines s.l.), if they formed respectively in a self-similar manner without undergoing important variations in their original curved shape or if their curvature in map-view is the result of a bending about a vertical axis of rotation. In addition to the kinematics of the arc and the timing of its curvature, a crucial factor for understanding the origin of belts curvature is the knowledge of the geodynamic process governing arc formation. In this context, the detailed reconstruction of the rotational history is mainly based on paleomagnetic and structural analyses (fold axes, kinematic indicators), which include the magnetic fabric. In fact, in curved fold and thrust belts, assuming that the magnetic lineation is tectonically originated and formed during layer-parallel shortening (LPS) before vertical axis rotations, the orientation of the magnetic lineation often strictly follows the curvature of the orogeny. This assumption represents a fundamental prerequisite to fully understand the origin of orogenic arcs and to unravel the geodynamic processes responsible for their curvature. We present two case studies: the central Mediterranean arcs and the Alborz Mts in Iran. The Mediterranean area has represented an attractive region to apply paleomagnetic analysis, as it shows a large number of narrow arcs, whose present-day shape has been driven by the space-time evolution of the Mediterranean subduction system, which define a irregular and rather diffuse plate boundary. The Alborz Mts. form a sinuous range over 1,200 km long, defining

  10. Single fluorophore melting curve analysis for detection of hypervirulent Clostridium difficile.

    PubMed

    Angione, Stephanie L; Croote, Derek; Leung, Joshua W; Mermel, Leonard A; Tripathi, Anubhav

    2016-01-01

    This study demonstrates a novel detection assay able to identify and subtype strains of Clostridium difficile. Primers carefully designed for melting curve analysis amplify DNA from three C. difficile genes, tcdB, tcdC and cdtB, during quantitative (q)PCR. The tcdB gene allows for confirmation of organism presence, whilst the tcdC and cdtB genes allow for differentiation of virulence status, as deletions in the tcdC gene and the concurrent presence of the cdtB gene, which produces binary toxin, are associated with hypervirulence. Following qPCR, subtyping is then achieved by automated, inline melting curve analysis using only a single intercalating dye and verified by microchip electrophoresis. This assay represents a novel means of distinguishing between toxigenic and hypervirulent C. difficile strains NAP1/027/BI and 078 ribotype, which are highly prevalent hypervirulent strains in humans. This methodology can help rapidly detect and identify C. difficile strains that impose a significant health and economic burden in hospitals and other healthcare settings. PMID:26516039

  11. Validation of a blood group genotyping method based on high-resolution melting curve analysis.

    PubMed

    Gong, Tianxiang; Hong, Ying; Wang, Naihong; Fu, Xuemei; Zhou, Changhua

    2014-01-01

    The detection of polymorphism is the basis of blood group genotyping and phenotype prediction. Genotyping may be useful to determine blood groups when serologic results are unclear. The development and application of different methods for blood group genotyping may be needed as a substitute for blood group typing. The purpose of this study is to establish an approach for blood group genotyping based on a melting curve analysis of real-time polymerase chain reaction (PCR). Using DNA extracted from whole blood, we developed and validated a DNA typing method for detecting DO*01/DO*02, DO*01/DI*02, LU*01/LU*02, and GYPB*03/GYBP*04 alleles using a melting curve analysis. All assays were confirmed with a commercial reagent containing sequence-specific primers (PCR-SSP), and a cohort of the samples was confirmed with sequencing. Results for all blood groups were within the range of specificity and assay variability. Genotypes of 300 blood donors were fully consistent with PCR-SSP data. The obtained genotype distribution is in complete concordance with existing data for the Chinese population. There are several advantages for this approach of blood group genotyping: lower contamination rates with PCR products in this laboratory, ease of performance, automation potential, and rapid cycling time.

  12. Nonlinear Analysis and Post-Test Correlation for a Curved PRSEUS Panel

    NASA Technical Reports Server (NTRS)

    Gould, Kevin; Lovejoy, Andrew E.; Jegley, Dawn; Neal, Albert L.; Linton, Kim, A.; Bergan, Andrew C.; Bakuckas, John G., Jr.

    2013-01-01

    The Pultruded Rod Stitched Efficient Unitized Structure (PRSEUS) concept, developed by The Boeing Company, has been extensively studied as part of the National Aeronautics and Space Administration's (NASA s) Environmentally Responsible Aviation (ERA) Program. The PRSEUS concept provides a light-weight alternative to aluminum or traditional composite design concepts and is applicable to traditional-shaped fuselage barrels and wings, as well as advanced configurations such as a hybrid wing body or truss braced wings. Therefore, NASA, the Federal Aviation Administration (FAA) and The Boeing Company partnered in an effort to assess the performance and damage arrestments capabilities of a PRSEUS concept panel using a full-scale curved panel in the FAA Full-Scale Aircraft Structural Test Evaluation and Research (FASTER) facility. Testing was conducted in the FASTER facility by subjecting the panel to axial tension loads applied to the ends of the panel, internal pressure, and combined axial tension and internal pressure loadings. Additionally, reactive hoop loads were applied to the skin and frames of the panel along its edges. The panel successfully supported the required design loads in the pristine condition and with a severed stiffener. The panel also demonstrated that the PRSEUS concept could arrest the progression of damage including crack arrestment and crack turning. This paper presents the nonlinear post-test analysis and correlation with test results for the curved PRSEUS panel. It is shown that nonlinear analysis can accurately calculate the behavior of a PRSEUS panel under tension, pressure and combined loading conditions.

  13. Single fluorophore melting curve analysis for detection of hypervirulent Clostridium difficile.

    PubMed

    Angione, Stephanie L; Croote, Derek; Leung, Joshua W; Mermel, Leonard A; Tripathi, Anubhav

    2016-01-01

    This study demonstrates a novel detection assay able to identify and subtype strains of Clostridium difficile. Primers carefully designed for melting curve analysis amplify DNA from three C. difficile genes, tcdB, tcdC and cdtB, during quantitative (q)PCR. The tcdB gene allows for confirmation of organism presence, whilst the tcdC and cdtB genes allow for differentiation of virulence status, as deletions in the tcdC gene and the concurrent presence of the cdtB gene, which produces binary toxin, are associated with hypervirulence. Following qPCR, subtyping is then achieved by automated, inline melting curve analysis using only a single intercalating dye and verified by microchip electrophoresis. This assay represents a novel means of distinguishing between toxigenic and hypervirulent C. difficile strains NAP1/027/BI and 078 ribotype, which are highly prevalent hypervirulent strains in humans. This methodology can help rapidly detect and identify C. difficile strains that impose a significant health and economic burden in hospitals and other healthcare settings.

  14. A Light Curve And Period Analysis Of AE Ursae Majoris, CY Aquarii, And DY Pegasi

    NASA Astrophysics Data System (ADS)

    Joner, Michael D.; Iverson, E. P.; Jolley, J. W.; Joner, L. A.; Swenson, C. A.

    2007-12-01

    We present a light curve analysis of three high amplitude delta Scuti stars (HADs). Data for this presentation were all secured during spring and fall of 2007. Most of the observations were obtained using the facilities of the Brigham Young University West Mountain Observatory. The variable stars we observed in this investigation include AE Ursae Majoris, CY Aquarii, and DY Pegasi. We present evidence for small period changes as well as an analysis of the light curve components for each of the variables. We compare the results obtained in the present investigation with prior studies of these same targets. This investigation is part of an initiative to provide a mentored learning environment at the West Mountain Observatory and to promote a variety of undergraduate research experiences. Tools developed in this investigation include the data reduction procedures that enable us to process the several thousand CCD frames that are secured each night as raw observations. We thank the Department of Physics and Astronomy and the College of Physical and Mathematical Sciences at Brigham Young University for the continued support of mentored undergraduate research.

  15. Analysis of Rail Vehicle Suspension Spring with Special Emphasis on Curving, Tracking and Tractive Efforts

    NASA Astrophysics Data System (ADS)

    Kumbhalkar, M. A.; Bhope, D. V.; Vanalkar, A. V.

    2016-09-01

    The dynamics of the rail vehicle represents a balance between the forces acting between wheel and rail, the inertia forces and the forces exerted by suspension and articulation. Axial loading on helical spring causes vertical deflection at straight track but failures calls to investigate for lateral and longitudinal loading at horizontal and vertical curves respectively. Goods carrying vehicle has the frequent failures of middle axle inner suspension spring calls for investigation. The springs are analyzed for effect of stress concentration due to centripetal force and due to tractive and breaking effort. This paper also discusses shear failure analysis of spring at curvature and at uphill at various speeds for different loading condition analytically and by finite element analysis. Two mass rail vehicle suspension systems have been analyzed for vibration responses analytically using mathematical tool Matlab Simulink and the same will be evaluated using FFT vibration analyzer to find peak resonance in vertical, lateral and longitudinal direction. The results prove that the suspension acquires high repeated load in vertical and lateral direction due to tracking and curving causes maximum stress concentration on middle axle suspension spring as height of this spring is larger than end axle spring in primary suspension system and responsible for failure of middle axle suspension spring due to high stress acquisition.

  16. Cooling Curve Analysis as an Alternative to Dilatometry in Continuous Cooling Transformations

    NASA Astrophysics Data System (ADS)

    Gibbs, John W.; Schlacher, Christian; Kamyabi-Gol, Ata; Mayr, Peter; Mendez, Patricio F.

    2015-01-01

    Dilatometry and cooling curve analysis (CCA) are two methods of determining the evolution of a phase transformation with temperature. The two methods are similar conceptual in that they take an indirect measure of the transformation and extract phase fraction information from it; however, the differences between the two methods typically makes one method better suited to analyzing a given transformation. However, without a quantitative comparison between the two methods, it is difficult to use them interchangeably. We address this by presenting a quantitative comparison of CCA and dilatometry for a martensitic transformation in a 9Cr3W3CoVNb steel. The resulting phase fraction data matches very well, within 5 K (5 °C) for any given phase fraction. This paper also extends to the quantitative methodology of calorimetry to the analysis of dilatometric data, with results comparable to ASTM A1033-10, but with expected higher accuracy by accounting by variable thermal expansion coefficients.

  17. Spectral analysis of stellar light curves by means of neural networks

    NASA Astrophysics Data System (ADS)

    Tagliaferri, R.; Ciaramella, A.; Milano, L.; Barone, F.; Longo, G.

    1999-06-01

    Periodicity analysis of unevenly collected data is a relevant issue in several scientific fields. In astrophysics, for example, we have to find the fundamental period of light or radial velocity curves which are unevenly sampled observations of stars. Classical spectral analysis methods are unsatisfactory to solve the problem. In this paper we present a neural network based estimator system which performs well the frequency extraction in unevenly sampled signals. It uses an unsupervised Hebbian nonlinear neural algorithm to extract, from the interpolated signal, the principal components which, in turn, are used by the MUSIC frequency estimator algorithm to extract the frequencies. The neural network is tolerant to noise and works well also with few points in the sequence. We benchmark the system on synthetic and real signals with the Periodogram and with the Cramer-Rao lower bound. This work was been partially supported by IIASS, by MURST 40\\% and by the Italian Space Agency.

  18. Z curve theory-based analysis of the dynamic nature of nucleosome positioning in Saccharomyces cerevisiae.

    PubMed

    Wu, Xueting; Liu, Hui; Liu, Hongbo; Su, Jianzhong; Lv, Jie; Cui, Ying; Wang, Fang; Zhang, Yan

    2013-11-01

    Nucleosome is the elementary structural unit of eukaryotic chromatin. Instability of nucleosome positioning plays critical roles in chromatin remodeling in differentiation and disease. In this study, we investigated nucleosome dynamics in the Saccharomyces cerevisiae genome using a geometric model based on Z curve theory. We identified 52,941 stable nucleosomes and 7607 dynamic nucleosomes, compiling them into a genome-wide nucleosome dynamic positioning map and constructing a user-friendly visualization platform (http://bioinfo.hrbmu.edu.cn/nucleosome). Our approach achieved a sensitivity of 90.31% and a specificity of 87.76% for S. cerevisiae. Analysis revealed transcription factor binding sites (TFBSs) were enriched in linkers. And among the sparse nucleosomes around TFBSs, dynamic nucleosomes were slightly preferred. Gene Ontology (GO) enrichment analysis indicated that stable and dynamic nucleosomes were enriched on genes involved in different biological processes and functions. This study provides an approach for comprehending chromatin remodeling and transcriptional regulation of genes.

  19. The composition-explicit distillation curve technique: Relating chemical analysis and physical properties of complex fluids.

    PubMed

    Bruno, Thomas J; Ott, Lisa S; Lovestead, Tara M; Huber, Marcia L

    2010-04-16

    The analysis of complex fluids such as crude oils, fuels, vegetable oils and mixed waste streams poses significant challenges arising primarily from the multiplicity of components, the different properties of the components (polarity, polarizability, etc.) and matrix properties. We have recently introduced an analytical strategy that simplifies many of these analyses, and provides the added potential of linking compositional information with physical property information. This aspect can be used to facilitate equation of state development for the complex fluids. In addition to chemical characterization, the approach provides the ability to calculate thermodynamic properties for such complex heterogeneous streams. The technique is based on the advanced distillation curve (ADC) metrology, which separates a complex fluid by distillation into fractions that are sampled, and for which thermodynamically consistent temperatures are measured at atmospheric pressure. The collected sample fractions can be analyzed by any method that is appropriate. The analytical methods we have applied include gas chromatography (with flame ionization, mass spectrometric and sulfur chemiluminescence detection), thin layer chromatography, FTIR, corrosivity analysis, neutron activation analysis and cold neutron prompt gamma activation analysis. By far, the most widely used analytical technique we have used with the ADC is gas chromatography. This has enabled us to study finished fuels (gasoline, diesel fuels, aviation fuels, rocket propellants), crude oils (including a crude oil made from swine manure) and waste oils streams (used automotive and transformer oils). In this special issue of the Journal of Chromatography, specifically dedicated to extraction technologies, we describe the essential features of the advanced distillation curve metrology as an analytical strategy for complex fluids.

  20. Comparative analysis of base flow recession curves for different Andean catchments

    NASA Astrophysics Data System (ADS)

    Guzman, P.; Batelaan, O.; Wyseure, G.

    2012-04-01

    Little is known in the Paute River basin, Ecuador about the groundwater resources, the relation between aquifers and their recharge zones and interaction with rivers. The pressure from human activities in the river basin is increasing and impacting the surface water quality and quantity, therefore it becomes increasingly useful to estimate the potential of groundwater exploitation as an alternative resource. Due to the lack of specific groundwater data and information, assessment of suitable alternative methods for groundwater research at different scales is considered. In low flow hydrology literature it is noted that the majority of natural gains to streamflow during low-flow periods are derived from releases from groundwater storage, moreover baseflow is generally suggested to be an indicator of groundwater or other delayed sources. Analysis of flow recession curves allows the determination of characteristics of the groundwater reservoir, which is a prerequisite for the separation of baseflow from total discharge and the estimation of groundwater storage and recharge. The flow recession curve at a river cross section is defined as the discharge hydrograph of the basin during a rainless or dry period. Its analysis yields information on the retention characteristics of the basin and of groundwater storage and depletion. In the Paute River basin baseflows are assumed to be originating from Paramo storage, which is largely determined by the high water retention capacity of the soils in combination with their slopes. In the case of the sub-catchment of the Tarqui River, there are evidences based on topography, hydromorphology, discharges and soils that suggest the presence of a major aquifer in the valley. Hence, the goal of this contribution is the comparison and analysis of groundwater conditions based on baseflow recession analysis for the Tarqui and Yanuncay River sub-catchments. Baseflow analyses are translated in recharge and groundwater resources

  1. DFT study of methanol adsorption and dissociation on β-Mo 2C(0 0 1)

    NASA Astrophysics Data System (ADS)

    Pistonesi, C.; Juan, A.; Farkas, A. P.; Solymosi, F.

    2008-07-01

    We have studied the adsorption and dissociation of methanol on β-Mo 2C(0 0 1) model surface using density functional theory calculations. We modeled the bulk and the Mo-terminated carbide surface using a four layer slab. Methanol is adsorbed with the OH group pointing towards the surface and the formation of the methoxy specie is energetically favorable after H abstraction. The surface outward dipole moment and adsorption heat computed are in agreement with previous experimental data in chemically analogous systems. The bonding analysis using the crystal orbital overlap population (COOP) curves shows a Mo-Mo weakening upon adsorption and a strong H-Mo interaction after dissociation.

  2. Buckling analysis of curved composite sandwich panels subjected to inplane loadings

    NASA Technical Reports Server (NTRS)

    Cruz, Juan R.

    1993-01-01

    Composite sandwich structures are being considered for primary structure in aircraft such as subsonic and high speed civil transports. The response of sandwich structures must be understood and predictable to use such structures effectively. Buckling is one of the most important response mechanisms of sandwich structures. A simple buckling analysis is derived for sandwich structures. This analysis is limited to flat, rectangular sandwich panels loaded by uniaxial compression (N(sub x)) and having simply supported edges. In most aerospace applications, however, the structure's geometry, boundary conditions, and loading are usually very complex. Thus, a general capability for analyzing the buckling behavior of sandwich structures is needed. The present paper describes and evaluates an improved buckling analysis for cylindrically curved composite sandwich panels. This analysis includes orthotropic facesheets and first-order transverse shearing effects. Both simple support and clamped boundary conditions are also included in the analysis. The panels can be subjected to linearly varying normal loads N(sub x) and N(sub y) in addition to a constant shear load N(sub xy). The analysis is based on the modified Donnell's equations for shallow shells. The governing equations are solved by direct application of Galerkin's method. The accuracy of the present analysis is verified by comparing results with those obtained from finite element analysis for a variety of geometries, loads, and boundary conditions. The limitations of the present analysis are investigated, in particular those related to the shallow shell assumptions in the governing equations. Finally, the computational efficiency of the present analysis is considered.

  3. Analysis of variation in L-365,260 competition curves in radioligand binding assays.

    PubMed Central

    Harper, E. A.; Roberts, S. P.; Shankley, N. P.; Black, J. W.

    1996-01-01

    1. For several years, we have used the cholecystokinin (CCK)B/gastrin receptor selective antagonist, L-365,260, as a reference compound in a variety of studies in CCKB/gastrin receptor radioligand binding assays. Here, we have analysed the competition curve data sets obtained between L-365,260 and [125I]-BH-CCK8S in guinea-pig gastric gland and mouse and rat cerebral cortex preparations. 2. Competition curves obtained for L-365,260 in the mouse cortex assay were not different from rectangular hyperbolae (slope = 1.01 +/- 0.02) implying the presence of a single population of binding sites (pKI = 8.41 +/- 0.01; data from 47 experiments, slope constrained to unity). However, in the rat cortex and guinea-pig gastric gland assays, the mean slope of the competition curves was significantly less than one and the mean apparent pKI significantly lower than that obtained in the mouse cortex (slope = 0.85 +/- 0.03, 0.90 +/- 0.03; apparent pKI = 7.98 +/- 0.05, 8.07 +/- 0.05; 48 and 45 experiments, in rat and guinea-pig, respectively). The distribution of the individual pKI and slope estimates of the competition curves in these two assays was consistent with expectations for the variable expression (in terms of absolute number and proportion) of two binding sites. The two sites were characterized by pKI values for L-365,260 of 8.50 +/- 0.04 and 8.48 +/- 0.04 for the high affinity site and 7.32 +/- 0.04 and 7.22 +/- 0.06 for the low affinity site in guinea-pig and rat, respectively. 3. The affinity estimates for L-365,260, although obtained on different tissues, are consistent with data obtained from the analysis of L-365,260 antagonism of pentagastrin-stimulated responses in mouse and rat stomach (acid secretion) and guinea-pig gastric muscle (isotonic contraction) assays. To this extent, these data suggest the existence of two CCKB/gastrin receptor subtypes. PMID:8842437

  4. Determination of secondary flow morphologies by wavelet analysis in a curved artery model with physiological inflow

    NASA Astrophysics Data System (ADS)

    Bulusu, Kartik V.; Hussain, Shadman; Plesniak, Michael W.

    2014-11-01

    Secondary flow vortical patterns in arterial curvatures have the potential to affect several cardiovascular phenomena, e.g., progression of atherosclerosis by altering wall shear stresses, carotid atheromatous disease, thoracic aortic aneurysms and Marfan's syndrome. Temporal characteristics of secondary flow structures vis-à-vis physiological (pulsatile) inflow waveform were explored by continuous wavelet transform (CWT) analysis of phase-locked, two-component, two-dimensional particle image velocimeter data. Measurements were made in a 180° curved artery test section upstream of the curvature and at the 90° cross-sectional plane. Streamwise, upstream flow rate measurements were analyzed using a one-dimensional antisymmetric wavelet. Cross-stream measurements at the 90° location of the curved artery revealed interesting multi-scale, multi-strength coherent secondary flow structures. An automated process for coherent structure detection and vortical feature quantification was applied to large ensembles of PIV data. Metrics such as the number of secondary flow structures, their sizes and strengths were generated at every discrete time instance of the physiological inflow waveform. An autonomous data post-processing method incorporating two-dimensional CWT for coherent structure detection was implemented. Loss of coherence in secondary flow structures during the systolic deceleration phase is observed in accordance with previous research. The algorithmic approach presented herein further elucidated the sensitivity and dependence of morphological changes in secondary flow structures on quasiperiodicity and magnitude of temporal gradients in physiological inflow conditions.

  5. Regionalization of subsurface stormflow parameters of hydrologic models: Derivation from regional analysis of streamflow recession curves

    NASA Astrophysics Data System (ADS)

    Ye, Sheng; Li, Hong-Yi; Huang, Maoyi; Ali, Melkamu; Leng, Guoyong; Leung, L. Ruby; Wang, Shao-wen; Sivapalan, Murugesu

    2014-11-01

    Subsurface stormflow is an important component of the rainfall-runoff response, especially in steep terrain. Its contribution to total runoff is, however, poorly represented in the current generation of land surface models. The lack of physical basis of these common parameterizations precludes a priori estimation of the stormflow (i.e. without calibration), which is a major drawback for prediction in ungauged basins, or for use in global land surface models. This paper is aimed at deriving regionalized parameterizations of the storage-discharge relationship relating to subsurface stormflow from a top-down empirical data analysis of streamflow recession curves extracted from 50 eastern United States catchments. Detailed regression analyses were performed between parameters of the empirical storage-discharge relationships and the controlling climate, soil and topographic characteristics. The regression analyses performed on empirical recession curves at catchment scale indicated that the coefficient of the power-law form storage-discharge relationship is closely related to the catchment hydrologic characteristics, which is consistent with the hydraulic theory derived mainly at the hillslope scale. As for the exponent, besides the role of field scale soil hydraulic properties as suggested by hydraulic theory, it is found to be more strongly affected by climate (aridity) at the catchment scale. At a fundamental level these results point to the need for more detailed exploration of the co-dependence of soil, vegetation and topography with climate.

  6. Verbal learning across the lifespan: an analysis of the components of the learning curve.

    PubMed

    Blachstein, Haya; Vakil, Eli

    2016-01-01

    Previous studies on the acquisition process of verbal material, conducted separately on child and adult populations, reveal that the lifespan is characterized by an inverted-U performance curve with similar achievements at its two poles. To clarify the acquisition mechanism across the entire lifespan, the learning curve for the Rey Auditory Verbal Learning Test was reproduced for participants aged 8-91. The study utilized typical trial summary scores and a more refined analysis of trial-by-trial single-word recalls, including omissions (missed words that were previously recalled), additions (recalled words previously missed), and touched words (a count for the first recall time only, for each word during the five learning trial). A clear age effect was shown for the number of words recalled - symmetrically increases during childhood and decreases in adulthood. Similarly, increased turnover of words omitted and added characterized both incremental and decremental age differences. Measurement patterns differed for the age segments on the two sides of the lifespan, despite the similar total number of words recalled by the two sides. Acquisition pattern in children was characterized by a higher number of touched words and higher turnover than for adult groups. In contrast, older adults achieved fewer touched words and lower turnover than the child groups. This study shows that it is possible to reach the same quantitative results via different cognitive processes. The results are interpreted in terms of specific mechanisms of maturational characteristics.

  7. Regionalization of subsurface stormflow parameters of hydrologic models: Derivation from regional analysis of streamflow recession curves

    SciTech Connect

    Ye, Sheng; Li, Hongyi; Huang, Maoyi; Ali, Melkamu; Leng, Guoyong; Leung, Lai-Yung R.; Wang, Shaowen; Sivapalan, Murugesu

    2014-07-21

    Subsurface stormflow is an important component of the rainfall–runoff response, especially in steep terrain. Its contribution to total runoff is, however, poorly represented in the current generation of land surface models. The lack of physical basis of these common parameterizations precludes a priori estimation of the stormflow (i.e. without calibration), which is a major drawback for prediction in ungauged basins, or for use in global land surface models. This paper is aimed at deriving regionalized parameterizations of the storage–discharge relationship relating to subsurface stormflow from a top–down empirical data analysis of streamflow recession curves extracted from 50 eastern United States catchments. Detailed regression analyses were performed between parameters of the empirical storage–discharge relationships and the controlling climate, soil and topographic characteristics. The regression analyses performed on empirical recession curves at catchment scale indicated that the coefficient of the power-law form storage–discharge relationship is closely related to the catchment hydrologic characteristics, which is consistent with the hydraulic theory derived mainly at the hillslope scale. As for the exponent, besides the role of field scale soil hydraulic properties as suggested by hydraulic theory, it is found to be more strongly affected by climate (aridity) at the catchment scale. At a fundamental level these results point to the need for more detailed exploration of the co-dependence of soil, vegetation and topography with climate.

  8. An analysis of the learning curve to achieve competency at colonoscopy using the JETS database

    PubMed Central

    Ward, Stephen Thomas; Mohammed, Mohammed A; Walt, Robert; Valori, Roland; Ismail, Tariq; Dunckley, Paul

    2014-01-01

    Objective The number of colonoscopies required to reach competency is not well established. The primary aim of this study was to determine the number of colonoscopies trainees need to perform to attain competency, defined by a caecal intubation rate (CIR) ≥90%. As competency depends on completion, we also investigated trainee factors that were associated with colonoscopy completion. Design The Joint Advisory Group on GI Endoscopy in the UK has developed a trainee e-portfolio from which colonoscopy data were retrieved. Inclusion criteria were all trainees who had performed a total of ≥20 colonoscopies and had performed ≤50 colonoscopies prior to submission of data to the e-portfolio. The primary outcome measure was colonoscopy completion. The number of colonoscopies required to achieve CIR ≥90% was calculated by the moving average method and learning curve cumulative summation (LC-Cusum) analysis. To determine factors which determine colonoscopy completion, a mixed effect logistic regression model was developed which allowed for nesting of patients within trainees and nesting of patients within hospitals, with various patient, trainee and training factors entered as fixed effects. Results 297 trainees undertook 36 730 colonoscopies. By moving average analysis, the cohort of trainees reached a CIR of 90% at 233 procedures. By LC-Cusum analysis, 41% of trainees were competent after 200 procedures. Of the trainee factors, the number of colonoscopies, intensity of training and previous flexible sigmoidoscopy experience were significant factors associated with colonoscopy completion. Conclusions This is the largest study to date investigating the number of procedures required to achieve competency in colonoscopy. The current training certification benchmark in the UK of 200 procedures does not appear to be an inappropriate minimum requirement. The LC-Cusum chart provides real time feedback on individual learning curves for trainees. The association of training

  9. A kinetic study of analyte-receptor binding and dissociation for biosensor applications: a fractal analysis for two different DNA systems.

    PubMed

    Ramakrishnan, Anand; Sadana, Ajit

    2002-01-01

    A fractal analysis of DNA binding and dissociation kinetics on biosensor surfaces is presented. The fractal approach provides an attractive, convenient method to model the kinetic data taking into account the effects of surface heterogeneity brought about by ligand immobilization. The fractal technique can be used in conjunction or as an alternate approach to conventional modeling techniques, such as the Langmuir model, saturation model, etc. Examples analyzed include a DNA molecular beacon biosensor and a plasmid DNA-(cationic polymer) interaction biosensor. The molecular beacon example provides some insights into the nature of the surface and how it influences the binding rate coefficients. The DNA-cationic polymer interaction example provides some quantitative results on the binding and dissociation rate coefficients. Data taken from the literature may be modeled, in the case of binding, using a single-fractal analysis or a dual-fractal analysis. The dual-fractal analysis results indicate a change in the binding mechanism as the reaction progresses on the surface. A single-fractal analysis is adequate to model the dissociation kinetics in the example presented. Relationships are presented for the binding rate coefficients as a function of their corresponding fractal dimension, D(f), which is an indication of the degree of heterogeneity that exists on the surface. When analyte-receptor binding is involved, an increase in the heterogeneity of the surface (increase in D(f)) leads to an increase in the binding rate coefficient.

  10. Prevalence of Helicobacter pylori in symptomatic patients and detection of clarithromycin resistance using melting curve analysis

    PubMed Central

    Kaya, Ayse Demet; Öztürk, C. Elif; Akcan, Yusuf; Behçet, Mustafa; Karakoç, A. Esra; Yücel, Mihriban; Mısırlıoglu, Müge; Tuncer, Serdar

    2007-01-01

    Abstract Background: Clarithromycin is often a component of combination therapies for Helicobacter pylori eradication; however, increases in resistance rates have decreased the success of the treatment. Objective: This study was designed to determine the prevalence of H pylori infection in symptomatic patients and to detect clarithromycin resistance rates using melting curve analysis. Methods: Patients scheduled for upper endoscopy at the Endoscopy Unit of the Department of Gastroenterology, Duzce University, Medical Faculty Hospital, Konuralp/Duzce, Turkey, were assessed for enrollment in the study. Two pairs of gastric biopsy specimens (antrum and corpus) were obtained from each study patient. Histopathologic examination, rapid urease test, culture, and polymerase chain reaction (PCR) of the specimens were used to identify H pylori infection. Clarithromycin resistance was detected using melting curve analysis. Results: Seventy-five patients (41 women, 34 men; mean [SD]age, 42.6 [14.5] years [range, 17–70 years]) were included in the study. Using histopathology and rapid urease test, H pylori was detected in 40 (53.3%) of the 75 specimens. H pylori was detected using PCR in 40 (53.3%) specimens and by culture in 10 (13.3%) specimens. The specificity and sensitivity of PCR and culture were interpreted by comparing them with the results of histopathologic examination and urease tests. The specificity and sensitivity of PCR were 68.6% and 72.5%, respectively, and the specificity and sensitivity of culture were 97.1% and 22.5%, respectively. Of the 40 isolates, 21 (52.5%) were susceptible to clarithromycin, 12 (30.0%) were resistant, and a mixed susceptibility pattern was detected in 7 (17.5%) specimens. H pylori isolates from 19 (79.2%) of the 24 patients who had formerly used clarithromycin showed clarithromycin resistance. Conclusions: The prevalence of H pylori infection was 53.3% for the symptomatic patients in this study, and 47.5% of the isolates showed

  11. The multidimensional inventory of dissociation (MID): A comprehensive measure of pathological dissociation.

    PubMed

    Dell, Paul F

    2006-01-01

    This article describes the development and validation of the Multidimensional Inventory of Dissociation (MID). The MID is a 218-item, self-administered, multiscale instrument that comprehensively assesses the phenomenological domain of pathological dissociation and diagnoses the dissociative disorders. The MID measures 14 major facets of pathological dissociation; it has 23 dissociation diagnostic scales that simultaneously operationalize (1) the subjective/ phenomenological domain of pathological dissociation and (2) the hypothesized dissociative symptoms of dissociative identity disorder (Dell, 2001a). The MID was designed for clinical research and for diagnostic assessment of patients who present with a mixture of dissociative, posttraumatic, and borderline symptoms. The MID demonstrated internal reliability, temporal stability, convergent validity, discriminant validity, and construct validity. The MID also exhibited incremental validity over the Dissociative Experiences Scale (DES) by predicting an additional 18% of the variance in weighted abuse scores on the Traumatic Experiences Questionnaire (TEQ). Confirmatory factor analysis (CFA) did not support a one-factor model of the MID's clinical scales (i.e., the 14 facets and the 23 diagnostic symptoms). In contrast, however, CFA of the MID's factor scales (Dell & Lawson, 2005) has strongly supported a one-factor model. It was concluded that both the MID's 168 dissociation items and the construct of pathological dissociation have a second-order, unifactorial structure.

  12. Vibration analysis and transient response of a functionally graded piezoelectric curved beam with general boundary conditions

    NASA Astrophysics Data System (ADS)

    Su, Zhu; Jin, Guoyong; Ye, Tiangui

    2016-06-01

    The paper presents a unified solution for free and transient vibration analyses of a functionally graded piezoelectric curved beam with general boundary conditions within the framework of Timoshenko beam theory. The formulation is derived by means of the variational principle in conjunction with a modified Fourier series which consists of standard Fourier cosine series and supplemented functions. The mechanical and electrical properties of functionally graded piezoelectric materials (FGPMs) are assumed to vary continuously in the thickness direction and are estimated by Voigt’s rule of mixture. The convergence, accuracy and reliability of the present formulation are demonstrated by comparing the present solutions with those from the literature and finite element analysis. Numerous results for FGPM beams with different boundary conditions, geometrical parameters as well as material distributions are given. Moreover, forced vibration of the FGPM beams subjected to dynamic loads and general boundary conditions are also investigated.

  13. Correlation Analysis of Optical and Radio Light Curves for a Large Sample of Active Galactic Nuclei

    NASA Astrophysics Data System (ADS)

    Clements, S. D.; Smith, A. G.; Aller, H. D.; Aller, M. F.

    1995-08-01

    The Rosemary Hill Observatory has accumulated internally consistent light curves extending over as much as 26 years for a large sample of active galactic nuclei. Forty-six of these optical records have been compared with similar radio records from the University of Michigan Radio Astronomy Observatory and the Algonquin Radio Observatory. For 18 objects, pairs of records were sufficiently long and unconfused to allow reliable application of the Discrete Correlation Function analysis; this group included 8 BL Lacertids, 8 quasars, and 2 Seyfert galaxies. Nine of the 18 sources showed positive radio-optical correlations, with the radio events lagging the optical by intervals ranging from 0 to 14 months. Consistent with the relativistic beaming model of the BL Lacertids, the group displaying correlations was dominated by this type of object.

  14. Single-channel multiplexing without melting curve analysis in real-time PCR.

    PubMed

    Lee, Young-Jo; Kim, Daeyoung; Lee, Kihoon; Chun, Jong-Yoon

    2014-01-01

    Multiplex real-time PCR with quantification of targets in a single fluorescence channel has been the demand in biotechnology industry. Here, we develop a novel analytical real-time PCR technique to detect multiple targets in a single fluorescence channel without melting curve analysis. In this technique, we show the intensity of the fluorescence signals of two discrete Tm targets is different at certain temperatures called detection temperatures, by which a high Tm target can be detected regardless of a low Tm target. We then identify the low Tm target by utilizing a change of the fluorescence signals between two different detection temperatures. Furthermore, it enables us to determine quantification of each target in a single channel, possibly facilitating convenient patient care for drug treatment in clinics. PMID:25501038

  15. Recurrence plot analysis of nonstationary data: The understanding of curved patterns

    NASA Astrophysics Data System (ADS)

    Facchini, A.; Kantz, H.; Tiezzi, E.

    2005-08-01

    Recurrence plots of the calls of the Nomascus concolor (Western black crested gibbon) and Hylobates lar (White-handed gibbon) show characteristic circular, curved, and hyperbolic patterns superimposed to the main temporal scale of the signal. It is shown that these patterns are related to particular nonstationarities in the signal. Some of them can be reproduced by artificial signals like frequency modulated sinusoids and sinusoids with time divergent frequency. These modulations are too faint to be resolved by conventional time-frequency analysis with similar precision. Therefore, recurrence plots act as a magnifying glass for the detection of multiple temporal scales in slightly modulated signals. The detected phenomena in these acoustic signals can be explained in the biomechanical context by taking in account the role of the muscles controlling the vocal folds.

  16. Dissociation between recognition and detection advantage for facial expressions: a meta-analysis.

    PubMed

    Nummenmaa, Lauri; Calvo, Manuel G

    2015-04-01

    Happy facial expressions are recognized faster and more accurately than other expressions in categorization tasks, whereas detection in visual search tasks is widely believed to be faster for angry than happy faces. We used meta-analytic techniques for resolving this categorization versus detection advantage discrepancy for positive versus negative facial expressions. Effect sizes were computed on the basis of the r statistic for a total of 34 recognition studies with 3,561 participants and 37 visual search studies with 2,455 participants, yielding a total of 41 effect sizes for recognition accuracy, 25 for recognition speed, and 125 for visual search speed. Random effects meta-analysis was conducted to estimate effect sizes at population level. For recognition tasks, an advantage in recognition accuracy and speed for happy expressions was found for all stimulus types. In contrast, for visual search tasks, moderator analysis revealed that a happy face detection advantage was restricted to photographic faces, whereas a clear angry face advantage was found for schematic and "smiley" faces. Robust detection advantage for nonhappy faces was observed even when stimulus emotionality was distorted by inversion or rearrangement of the facial features, suggesting that visual features primarily drive the search. We conclude that the recognition advantage for happy faces is a genuine phenomenon related to processing of facial expression category and affective valence. In contrast, detection advantages toward either happy (photographic stimuli) or nonhappy (schematic) faces is contingent on visual stimulus features rather than facial expression, and may not involve categorical or affective processing.

  17. Multivariate curve resolution: a powerful tool for the analysis of conformational transitions in nucleic acids

    PubMed Central

    Jaumot, Joaquim; Escaja, Núria; Gargallo, Raimundo; González, Carlos; Pedroso, Enrique; Tauler, Romà

    2002-01-01

    A successful application is reported of the multivariate curve resolution alternating least-squares method (MCR-ALS) for the analysis of nucleic acid melting and salt-induced transitions. Under conditions where several structures co-exist in a conformational equilibrium, MCR-ALS analysis of the UV and circular dichroism (CD) spectra at different temperatures, ionic strength and oligonucleotide concentration allows for the resolution of concentration profiles and pure spectra of the different species. The methodology is illustrated by the case of the cyclic oligonucleotide d. The melting transition of this molecule at different oligonucleotide concentrations was studied at 0, 2 and 10 mM MgCl2 by UV and CD spectroscopy. In addition, salt titration experiments were carried out at 21.0 and 54.0°C. The MCR-ALS analysis indicates that three different conformations of this molecule co-exist in solution. In agreement with previous NMR studies, these conformations were assigned to a monomeric dumbbell-like structure, a dimeric four-stranded conformation and a disordered (random coil) structure. The MCR-ALS methodology allows for a detailed analysis of how this equilibrium is affected by temperature, salt and oligonucleotide concentration. PMID:12202780

  18. BLOT: A mesh and curve plot program for the output of a finite element analysis

    SciTech Connect

    Gilkey, A.P.; Glick, J.H.

    1989-06-01

    BLOT is a graphics program for post-processing of finite element analysis output that is presented in the EXODUS database format. It is command driven with free-format input and can drive any graphics device supported by the Sandia Virtual Device Interface. BLOT produces mesh plots with various representations of the analysis output variables. The major mesh plot capabilities are deformed mesh plots, line contours, banded contours, vector plots of two or three variables (e.g., velocity vectors), and symbol plots of scalar variables (e.g., temperature). Pathlines of analysis variables can also be drawn on the mesh. BLOT's features include element selection by material, element birth and death, multiple views for combining several displays on each plot, symmetry mirroring, and node and element numbering. BLOT can also produce X-Y curve plots of the analysis variables. BLOT generates time-versus-variable plots or variable-versus-variable plots. It also generates distance versus-variable plots at selected time steps where the distance is the accumulated distance between pairs of nodes or element centers. 14 refs.

  19. Multivariate curve resolution for hyperspectral image analysis :applications to microarray technology.

    SciTech Connect

    Van Benthem, Mark Hilary; Sinclair, Michael B.; Haaland, David Michael; Martinez, M. Juanita (University of New Mexico, Albuquerque, NM); Timlin, Jerilyn Ann; Werner-Washburne, Margaret C. (University of New Mexico, Albuquerque, NM); Aragon, Anthony D. (University of New Mexico, Albuquerque, NM)

    2003-01-01

    Multivariate curve resolution (MCR) using constrained alternating least squares algorithms represents a powerful analysis capability for a quantitative analysis of hyperspectral image data. We will demonstrate the application of MCR using data from a new hyperspectral fluorescence imaging microarray scanner for monitoring gene expression in cells from thousands of genes on the array. The new scanner collects the entire fluorescence spectrum from each pixel of the scanned microarray. Application of MCR with nonnegativity and equality constraints reveals several sources of undesired fluorescence that emit in the same wavelength range as the reporter fluorphores. MCR analysis of the hyperspectral images confirms that one of the sources of fluorescence is due to contaminant fluorescence under the printed DNA spots that is spot localized. Thus, traditional background subtraction methods used with data collected from the current commercial microarray scanners will lead to errors in determining the relative expression of low-expressed genes. With the new scanner and MCR analysis, we generate relative concentration maps of the background, impurity, and fluorescent labels over the entire image. Since the concentration maps of the fluorescent labels are relatively unaffected by the presence of background and impurity emissions, the accuracy and useful dynamic range of the gene expression data are both greatly improved over those obtained by commercial microarray scanners.

  20. Multivariate Curve Resolution Applied to Hyperspectral Imaging Analysis of Chocolate Samples.

    PubMed

    Zhang, Xin; de Juan, Anna; Tauler, Romà

    2015-08-01

    This paper shows the application of Raman and infrared hyperspectral imaging combined with multivariate curve resolution (MCR) to the analysis of the constituents of commercial chocolate samples. The combination of different spectral data pretreatment methods allowed decreasing the high fluorescent Raman signal contribution of whey in the investigated chocolate samples. Using equality constraints during MCR analysis, estimations of the pure spectra of the chocolate sample constituents were improved, as well as their relative contributions and their spatial distribution on the analyzed samples. In addition, unknown constituents could be also resolved. White chocolate constituents resolved from Raman hyperspectral image indicate that, at macro scale, sucrose, lactose, fat, and whey constituents were intermixed in particles. Infrared hyperspectral imaging did not suffer from fluorescence and could be applied for white and milk chocolate. As a conclusion of this study, micro-hyperspectral imaging coupled to the MCR method is confirmed to be an appropriate tool for the direct analysis of the constituents of chocolate samples, and by extension, it is proposed for the analysis of other mixture constituents in commercial food samples.

  1. Analysis of H2 clearance curves used to measure blood flow in rat sciatic nerve.

    PubMed Central

    Day, T J; Lagerlund, T D; Low, P A

    1989-01-01

    1. By use of the H2 clearance technique, blood flow was measured in the sciatic nerve of healthy, anaesthetized Sprague-Dawley rats at rest, during inferior vena cava occlusion and during 5-hydroxytryptamine infusion. The purpose was to clarify the mechanisms underlying the biexponential curves which are commonly obtained using this technique. 2. An analysis of the frequency distribution of rate constants of 270 nerve and thirty-three arterial samples indicated that H2 clearance rates cluster below 20 ml min-1 100 g-1 and between 70 and 100 ml min-1 100 g-1. This suggests that at least two compartments are present. 3. The contribution of diffusion was studied by recording H2 clearance immediately following circulatory arrest. Slow clearance rates (median = 2.4 ml min-1 100 g-1) were observed, indicating that diffusion is not likely to contribute significantly to nutritive flow under most situations. 4. The contribution of arteriovenous shunts to H2 clearance was assessed by determining H2 clearance during inferior vena cava occlusion and the infusion of 5-hydroxytryptamine. Both manoeuvres caused abolition of, or a significant reduction in the weight of, the fast component which indicates that this compartment is closely related to arteriovenous shunts in nerve. 5. By use of a multi-compartmental model, it was shown that H2 clearance should follow a multi-exponential course, where the weights of the components reflect the relative volumes of each compartment and the exponents represent the relative flow (i.e. flow per unit volume) in each compartment. 6. By use of other mathematical models, estimates were made for the clearance rates attributable to polarographic oxidation of H2 at the tip of the microelectrode (0.2 ml min-1 100 g-1) and to diffusion to air (2 ml min-1 100 g-1). The latter estimate is very close to the measured value of 2.4 ml min-1 100 g-1. 7. These findings indicate that it is possible to separately assess nutritive and non-nutritive flow by

  2. Light curve analysis of GSC 2750-0054 and GSC 03208-02644

    NASA Astrophysics Data System (ADS)

    Elkhateeb, M. M.; Nouh, M. I.

    2016-11-01

    We present the first photometric analysis for the newly discovered eclipsing binary systems of Algole-type GSC 2750-0054 and GSC 03208-02644. Our analysis was carried out by means of the most recent version of Wilson Devinney (WD) code, which applies the model atmosphere by (Kurucz, R., 1993. In: Milon, E. (Ed.), Light Curve Modeling of Eclipsing Binary Stars. Springer-Verlag, New York, p. 93) with a prescription in passband for the radiative treatment. The accepted light curve solutions reveal absolute physical parameters and the spectral classifications for the components are adopted. We derived the spectral types of the system GSC 2750-0054 as K3 and K7. The physical parameters of the system are M1 = 0.72 ± 0.03 M⊙, M2 = 0.47 ± 0.02 M⊙, R1 = 0.81 ± 0.03 R⊙, R2 = 0.62 ± 0.03 R⊙, L1 = 0.27 ± 0.01 L⊙ and L2 = 0.1 ± 0.004 L⊙. For the system, GSC 03208 02644 the spectral types of the components are A5 and A8. The physical parameters are M1 = 1.86 ± 0.076 M⊙, M2 = 1.21 ± 0.049 M⊙, R1 = 1.84 ± 0.075 R⊙, R2 = 1.75 ± 0.072 R⊙, L1 = 13.58 ± 0.55 L⊙ and L2 = 9.94 ± 0.41 L⊙. Comparison with the evolutionary models as well as the empirical databases is presented.

  3. Human fetal weight and placental weight growth curves. A mathematical analysis from a population at sea level.

    PubMed

    Bonds, D R; Mwape, B; Kumar, S; Gabbe, S G

    1984-01-01

    A mathematical analysis of human fetal and placental growth curves was made on data collected prospectively from a population at sea level. Both the fetal and placental growth curves can best be described by a form of the logistic equation inhibited growth model. The fetal growth rate reaches its maximum approximately 4 weeks after the placental growth rate has reached its maximum. Growth rate constants were calculated for several populations at various altitudes. PMID:6733167

  4. The fog is lifting; veils of mist come and go: an interpretative phenomenological analysis of the experiences of six women recovering from pathological dissociation.

    PubMed

    Mauritzson, Margareta; Bergendahl Odby, Elisabeth; Holmqvist, Rolf; Nilsson, Doris

    2015-01-01

    The aim of this study was to illuminate experiences of the process of recovering from pathological dissociation. The study used data from interviews with six female participants diagnosed with pathological dissociative disturbances. All the women had a history of having been sexually abused. Data were analyzed using Interpretative Phenomenological Analysis (IPA). Two main themes emerged in the analysis: social and relational change and self in movement. The themes mirror the interplay in the recovery process that took place both intrapsychically and with regard to the relational interplay between self and other significant people. The recovery process was dependent on an incipient sense of security in relational interaction, and this process was hindered by insecurity and ambivalence in relationships. Each patient's relationship with her therapist also played a crucial role for the participants.

  5. Combined Use of Post-Ion Mobility/Collision-Induced Dissociation and Chemometrics for b Fragment Ion Analysis

    NASA Astrophysics Data System (ADS)

    Zekavat, Behrooz; Miladi, Mahsan; Becker, Christopher; Munisamy, Sharon M.; Solouki, Touradj

    2013-09-01

    Although structural isomers may yield indistinguishable ion mobility (IM) arrival times and similar fragment ions in tandem mass spectrometry (MS), it is demonstrated that post-IM/collision-induced dissociation MS (post-IM/CID MS) combined with chemometrics can enable independent study of the IM-overlapped isomers. The new approach allowed us to investigate the propensity of selected b type fragment ions from AlaAlaAlaHisAlaAlaAla-NH2 (AAA(His)AAA) heptapeptide to form different isomers. Principle component analysis (PCA) of the unresolved post-IM/CID profiles indicated the presence of two different isomer types for b4 +, b5 +, and b6 + and a single isomer type for b7 + fragments of AAA(His)AAA. We employed a simple-to-use interactive self-modeling mixture analysis (SIMPLISMA) to calculate the total IM profiles and CID mass spectra of b fragment isomers. The deconvoluted CID mass spectra showed discernible fragmentation patterns for the two isomers of b4 +, b5 +, and b6 + fragments. Under our experimental conditions, calculated percentages of the "cyclic" isomers (at the 95 % confidence level for n = 3) for b4 +, b5 +, and b6 + were 61 (± 5) %, 36 (± 5) %, and 48 (± 2) %, respectively. Results from the SIMPLISMA deconvolution of b5 + species resembled the CID MS patterns of fully resolved IM profiles for the two b5 + isomers. The "cyclic" isomers for each of the two-component b fragment ions were less susceptible to ion fragmentation than their "linear" counterparts.

  6. Dissociation in borderline personality disorder: a detailed look.

    PubMed

    Korzekwa, Marilyn I; Dell, Paul F; Links, Paul S; Thabane, Lehana; Fougere, Philip

    2009-01-01

    The objective of the present study was to assess in detail the whole spectrum of normal and pathological dissociative experiences and dissociative disorder (DD) diagnoses in borderline personality disorder (BPD) as diagnosed with the Revised Diagnostic Interview for Borderlines. Dissociation was measured comprehensively in 21 BPD outpatients using the Structured Clinical Interview for DSM-IV Dissociative Disorders-Revised, the Multidimensional Inventory of Dissociation (MID), the Dissociative Experiences Scale pathological taxon analysis, and the Somatoform Dissociation Questionnaire. The frequencies of DDs in this BPD sample were as follows: 24% no DD, 29% mild DD (dissociative amnesia and depersonalization disorder), 24% DD Not Otherwise Specified (DDNOS), and 24% dissociative identity disorder. With regard to the dissociative experiences endorsed, almost all patients reported identity confusion, unexplained mood changes, and depersonalization. Even those BPD patients with mild DD reported derealization, depersonalization, and dissociative amnesia. BPD patients with DDNOS reported frequent depersonalization, frequent amnesia, and notable experiences of identity alteration. BPD patients with dissociative identity disorder endorsed severe dissociative symptoms in all categories. Analysis of the MID pathological dissociation items revealed that 32% of the items were endorsed at a clinically significant level of frequency by more than 50% of our BPD patients. In conclusion, the frequencies of Diagnostic and Statistical Manual of Mental Disorders (4th ed.) DDs in these patients with BPD were surprisingly high. Likewise, the "average" BPD patient endorsed a wide variety of recurrent pathological dissociative symptoms.

  7. Dissociated Vertical Deviation

    MedlinePlus

    ... Eye Terms Conditions Frequently Asked Questions Español Condiciones Chinese Conditions Dissociated Vertical Deviation En Español Read in Chinese What is Dissociated Vertical Deviation (DVD)? DVD is ...

  8. Analysis of Surface Plasmon Resonance Curves with a Novel Sigmoid-Asymmetric Fitting Algorithm.

    PubMed

    Jang, Daeho; Chae, Geunhyoung; Shin, Sehyun

    2015-01-01

    The present study introduces a novel curve-fitting algorithm for surface plasmon resonance (SPR) curves using a self-constructed, wedge-shaped beam type angular interrogation SPR spectroscopy technique. Previous fitting approaches such as asymmetric and polynomial equations are still unsatisfactory for analyzing full SPR curves and their use is limited to determining the resonance angle. In the present study, we developed a sigmoid-asymmetric equation that provides excellent curve-fitting for the whole SPR curve over a range of incident angles, including regions of the critical angle and resonance angle. Regardless of the bulk fluid type (i.e., water and air), the present sigmoid-asymmetric fitting exhibited nearly perfect matching with a full SPR curve, whereas the asymmetric and polynomial curve fitting methods did not. Because the present curve-fitting sigmoid-asymmetric equation can determine the critical angle as well as the resonance angle, the undesired effect caused by the bulk fluid refractive index was excluded by subtracting the critical angle from the resonance angle in real time. In conclusion, the proposed sigmoid-asymmetric curve-fitting algorithm for SPR curves is widely applicable to various SPR measurements, while excluding the effect of bulk fluids on the sensing layer. PMID:26437414

  9. Analysis of Surface Plasmon Resonance Curves with a Novel Sigmoid-Asymmetric Fitting Algorithm

    PubMed Central

    Jang, Daeho; Chae, Geunhyoung; Shin, Sehyun

    2015-01-01

    The present study introduces a novel curve-fitting algorithm for surface plasmon resonance (SPR) curves using a self-constructed, wedge-shaped beam type angular interrogation SPR spectroscopy technique. Previous fitting approaches such as asymmetric and polynomial equations are still unsatisfactory for analyzing full SPR curves and their use is limited to determining the resonance angle. In the present study, we developed a sigmoid-asymmetric equation that provides excellent curve-fitting for the whole SPR curve over a range of incident angles, including regions of the critical angle and resonance angle. Regardless of the bulk fluid type (i.e., water and air), the present sigmoid-asymmetric fitting exhibited nearly perfect matching with a full SPR curve, whereas the asymmetric and polynomial curve fitting methods did not. Because the present curve-fitting sigmoid-asymmetric equation can determine the critical angle as well as the resonance angle, the undesired effect caused by the bulk fluid refractive index was excluded by subtracting the critical angle from the resonance angle in real time. In conclusion, the proposed sigmoid-asymmetric curve-fitting algorithm for SPR curves is widely applicable to various SPR measurements, while excluding the effect of bulk fluids on the sensing layer. PMID:26437414

  10. Kepler light-curve analysis of the blazar W2R 1926+42

    NASA Astrophysics Data System (ADS)

    Mohan, P.; Gupta, Alok C.; Bachev, Rumen; Strigachev, Anton

    2016-02-01

    We study the long term Kepler light curve of the blazar W2R 1926+42 (˜1.6 yr) which indicates a variety of variability properties during different intervals of observation. The normalized excess variance, Fvar ranges from 1.8 per cent in the quiescent phase and 43.3 per cent in the outburst phase. We find no significant deviation from linearity in the Fvar-flux relation. Time series analysis is conducted using the Fourier power spectrum and the wavelet analysis methods to study the power spectral density (PSD) shape, infer characteristic time-scales and statistically significant quasi-periodic oscillations (QPOs). A bending power law with an associated time-scale of T_B = 6.2^{+6.4}_{-3.1} hours is inferred in the PSD analysis. We obtain a black hole mass of M• = (1.5-5.9) × 107 M⊙ for the first time using Fvar and the bend time-scale for this source. From a mean outburst lifetime of days, we infer a distance from the jet base r ≤ 1.75 pc indicating that the outburst originates due to a shock. A possible QPO peaked at 9.1 d and lasting 3.4 cycles is inferred from the wavelet analysis. Assuming that the QPO is a true feature, r = (152-378)GM•/c2 and supported by the other timing analysis products such as a weighted mean PSD slope of -1.5 ± 0.2 from the PSD analysis, we argue that the observed variability and the weak and short duration QPO could be due to jet based processes including orbital features in a relativistic helical jet and others such as shocks and turbulence.

  11. Analysis of determinants of ventricular fibrillation induced by reperfusion: dissociation between electrical instability and myocardial damage.

    PubMed

    Kinoshita, K; Mitani, A; Tsuruhara, Y; Kanegae, Y; Tokunaga, K

    1992-06-01

    To assess the underlying mechanisms of ventricular fibrillation induced by myocardial reperfusion after cardioplegic arrest, 62 patients undergoing an open heart operation were divided into two groups based on the absence (group 1, n = 37) or the development (group 2, n = 25) of reperfusion-induced ventricular fibrillation. There was no close relationship between the incidence of reperfusion-induced ventricular fibrillation and aortic clamp time. On reperfusion, the time to onset of cardiac activity was similar in groups 1 (2.4 +/- 1.8 minutes) and 2 (1.9 +/- 1.1 minutes). At that time, there was no significant difference in values of arterial oxygen and bicarbonate contents, pH, or base excess between the two groups, but myocardial temperature was significantly higher in group 2 (25.6 degrees +/- 3.4 degrees versus 27.6 degrees +/- 2.4 degrees C; p less than 0.05). In addition, serum levels of sodium (123.9 +/- 4.2 versus 126.1 +/- 3.7 mmol/L; p less than 0.05) and calcium (0.80 +/- 0.07 versus 0.84 +/- 0.05 mmol/L; p less than 0.05) were significantly higher and serum potassium levels (3.98 +/- 0.58 versus 3.55 +/- 0.61 mmol/L; p less than 0.02) and the serum potassium to calcium ratio (4.94 +/- 0.90 versus 4.29 +/- 0.72; p less than 0.01) significantly lower in group 2. Postoperative serum levels of the myocardial-specific isoenzyme of creatine kinase and myoglobin were similar in both groups. By multivariate analysis, shorter ischemic time, higher myocardial temperature, higher serum sodium concentration, and lower serum potassium to calcium ratio were found to influence induction of reperfusion-induced ventricular fibrillation.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:1596162

  12. Evaluation of drug-polymer solubility curves through formal statistical analysis: comparison of preparation techniques.

    PubMed

    Knopp, Matthias Manne; Olesen, Niels Erik; Holm, Per; Löbmann, Korbinian; Holm, René; Langguth, Peter; Rades, Thomas

    2015-01-01

    In this study, the influence of the preparation technique (ball milling, spray drying, and film casting) of a supersaturated amorphous dispersion on the quality of solubility determinations of indomethacin in polyvinylpyrrolidone was investigated by means of statistical analysis. After annealing of the amorphous dispersions above the crystallization temperature for 2 h, the solubility curve was derived from the glass transition temperature of the demixed material using the Gordon-Taylor relationship and fitting with the Flory-Huggins model. The study showed that the predicted solubility from the ball-milled mixtures was not consistent with those from spray drying and film casting, indicating fundamental differences between the preparation techniques. Through formal statistical analysis, the best combination of fit to the Flory-Huggins model and reproducibility of the measurements was analyzed. Ball milling provided the best reproducibility of the three preparation techniques; however, an analysis of residuals revealed a systematic error. In contrast, film casting demonstrated a good fit to the model but poor reproducibility of the measurements. Therefore, this study recommends that techniques such as spray drying or potentially film casting (if experimental reproducibility can be improved) should be used to prepare the amorphous dispersions when performing solubility measurements of this kind.

  13. Differentiation of Campylobacter jejuni and Campylobacter coli Using Multiplex-PCR and High Resolution Melt Curve Analysis.

    PubMed

    Banowary, Banya; Dang, Van Tuan; Sarker, Subir; Connolly, Joanne H; Chenu, Jeremy; Groves, Peter; Ayton, Michelle; Raidal, Shane; Devi, Aruna; Vanniasinkam, Thiru; Ghorashi, Seyed A

    2015-01-01

    Campylobacter spp. are important causes of bacterial gastroenteritis in humans in developed countries. Among Campylobacter spp. Campylobacter jejuni (C. jejuni) and C. coli are the most common causes of human infection. In this study, a multiplex PCR (mPCR) and high resolution melt (HRM) curve analysis were optimized for simultaneous detection and differentiation of C. jejuni and C. coli isolates. A segment of the hippuricase gene (hipO) of C. jejuni and putative aspartokinase (asp) gene of C. coli were amplified from 26 Campylobacter isolates and amplicons were subjected to HRM curve analysis. The mPCR-HRM was able to differentiate between C. jejuni and C. coli species. All DNA amplicons generated by mPCR were sequenced. Analysis of the nucleotide sequences from each isolate revealed that the HRM curves were correlated with the nucleotide sequences of the amplicons. Minor variation in melting point temperatures of C. coli or C. jejuni isolates was also observed and enabled some intraspecies differentiation between C. coli and/or C. jejuni isolates. The potential of PCR-HRM curve analysis for the detection and speciation of Campylobacter in additional human clinical specimens and chicken swab samples was also confirmed. The sensitivity and specificity of the test were found to be 100% and 92%, respectively. The results indicated that mPCR followed by HRM curve analysis provides a rapid (8 hours) technique for differentiation between C. jejuni and C. coli isolates.

  14. Construction of antagonist dose-response curves for estimation of pA2-values by Schild-plot analysis and detection of allosteric interactions.

    PubMed Central

    Pöch, G.; Brunner, F.; Kühberger, E.

    1992-01-01

    1. One aim of this paper is to show an alternative approach for the determination of antagonist affinity estimates, KB and pA2, by construction and evaluation of antagonist dose-response curves (DRCs), using the curve-fitting programme, ALLFIT. 2. Parallel antagonist DRCs were derived by vertical analysis of families of conventional agonist DRCs in the presence and absence of an antagonist at a certain agonist concentration above its ED50. The latter represents a chosen, i.e. fixed dose-ratio (DR). The antagonist concentration that reduces an agonist effect to its Emax/2 was termed Bx. It corresponds to B, the fixed antagonist concentration, tested to obtain DR-1, conventionally. 3. The dissociation constant was calculated as KB = Bx/DR-1, analogous to the conventional approach (KB = B/DR-1). Likewise, pA2-values were estimated by plotting log Bx, obtained by the alternative approach, vs log (DR-1) in an 'alternative Schild plot'. 4. Experimental agonist DRCs from our laboratory and from the literature were analysed and KB- and pA2-values obtained by the alternative approach were compared with those obtained by the conventional method. The results showed a very good agreement (correlation) between the pA2-values obtained by either method (slope = 1.02, r = 0.99, n = 9), in agreement with theoretical DRCs. 5. Besides estimation of KB and pA2, antagonist DRCs were also evaluated qualitatively. The most important finding was that allosteric antagonists or competitive antagonists with an allosteric component, such as gallamine, showed a significant reduction in the maximum of the antagonist DRCs (Imax). The evaluation of antagonist DRCs appears to be a sensitive procedure to detect allosteric interactions.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:1504755

  15. Vibrational analysis of HOCl up to 98{percent} of the dissociation energy with a Fermi resonance Hamiltonian

    SciTech Connect

    Jost, R.; Joyeux, M.; Skokov, S.; Bowman, J.

    1999-10-01

    We have analyzed the vibrational energies and wave functions of HOCl obtained from previous {ital ab initio} calculations [J. Chem. Phys. {bold 109}, 2662 (1998); {bold 109}, 10273 (1998)]. Up to approximately 13&hthinsp;000 cm{sup {minus}1}, the normal modes are nearly decoupled, so that the analysis is straightforward with a Dunham model. In contrast, above 13&hthinsp;000 cm{sup {minus}1} the Dunham model is no longer valid for the levels with no quanta in the OH stretch (v{sub 1}=0). In addition to v{sub 1}, these levels can only be assigned a so-called polyad quantum number P=2v{sub 2}+v{sub 3}, where 2 and 3 denote, respectively, the bending and OCl stretching normal modes. In contrast, the levels with v{sub 1}{ge}2 remain assignable with three v{sub i} quantum numbers up to the dissociation (D{sub 0}=19&hthinsp;290&hthinsp;cm{sup {minus}1}). The interaction between the bending and the OCl stretch ({omega}{sub 2}{congruent}2{omega}{sub 3}) is well described with a simple, fitted Fermi resonance Hamiltonian. The energies and wave functions of this model Hamiltonian are compared with those obtained from {ital ab initio} calculations, which in turn enables the assignment of many additional {ital ab initio} vibrational levels. Globally, among the 809 bound levels calculated below dissociation, 790 have been assigned, the lowest unassigned level, No. 736, being located at 18&hthinsp;885 cm{sup {minus}1} above the (0,0,0) ground level, that is, at about 98{percent} of D{sub 0}. In addition, 84 {open_quotes}resonances{close_quotes} located above D{sub 0} have also been assigned. Our best Fermi resonance Hamiltonian has 29 parameters fitted with 725 {ital ab initio} levels, the rms deviation being of 5.3 cm{sup {minus}1}. This set of 725 fitted levels includes the full set of levels up to No. 702 at 18&hthinsp;650 cm{sup {minus}1}. The {ital ab initio} levels, which are assigned but not included in the fit, are reasonably predicted by the model Hamiltonian, but with a

  16. [Application of calibration curve method and partial least squares regression analysis to quantitative analysis of nephrite samples using XRF].

    PubMed

    Liu, Song; Su, Bo-min; Li, Qing-hui; Gan, Fu-xi

    2015-01-01

    The authors tried to find a method for quantitative analysis using pXRF without solid bulk stone/jade reference samples. 24 nephrite samples were selected, 17 samples were calibration samples and the other 7 are test samples. All the nephrite samples were analyzed by Proton induced X-ray emission spectroscopy (PIXE) quantitatively. Based on the PIXE results of calibration samples, calibration curves were created for the interested components/elements and used to analyze the test samples quantitatively; then, the qualitative spectrum of all nephrite samples were obtained by pXRF. According to the PIXE results and qualitative spectrum of calibration samples, partial least square method (PLS) was used for quantitative analysis of test samples. Finally, the results of test samples obtained by calibration method, PLS method and PIXE were compared to each other. The accuracy of calibration curve method and PLS method was estimated. The result indicates that the PLS method is the alternate method for quantitative analysis of stone/jade samples.

  17. High-throughput gender identification of penguin species using melting curve analysis.

    PubMed

    Tseng, Chao-Neng; Chang, Yung-Ting; Chiu, Hui-Tzu; Chou, Yii-Cheng; Huang, Hurng-Wern; Cheng, Chien-Chung; Liao, Ming-Hui; Chang, Hsueh-Wei

    2014-04-01

    Most species of penguins are sexual monomorphic and therefore it is difficult to visually identify their genders for monitoring population stability in terms of sex ratio analysis. In this study, we evaluated the suitability using melting curve analysis (MCA) for high-throughput gender identification of penguins. Preliminary test indicated that the Griffiths's P2/P8 primers were not suitable for MCA analysis. Based on sequence alignment of Chromo-Helicase-DNA binding protein (CHD)-W and CHD-Z genes from four species of penguins (Pygoscelis papua, Aptenodytes patagonicus, Spheniscus magellanicus, and Eudyptes chrysocome), we redesigned forward primers for the CHD-W/CHD-Z-common region (PGU-ZW2) and the CHD-W-specific region (PGU-W2) to be used in combination with the reverse Griffiths's P2 primer. When tested with P. papua samples, PCR using P2/PGU-ZW2 and P2/PGU-W2 primer sets generated two amplicons of 148- and 356-bp, respectively, which were easily resolved in 1.5% agarose gels. MCA analysis indicated the melting temperature (Tm) values for P2/PGU-ZW2 and P2/PGU-W2 amplicons of P. papua samples were 79.75°C-80.5°C and 81.0°C-81.5°C, respectively. Females displayed both ZW-common and W-specific Tm peaks, whereas male was positive only for ZW-common peak. Taken together, our redesigned primers coupled with MCA analysis allows precise high throughput gender identification for P. papua, and potentially for other penguin species such as A. patagonicus, S. magellanicus, and E. chrysocome as well. PMID:24555797

  18. High-throughput gender identification of penguin species using melting curve analysis.

    PubMed

    Tseng, Chao-Neng; Chang, Yung-Ting; Chiu, Hui-Tzu; Chou, Yii-Cheng; Huang, Hurng-Wern; Cheng, Chien-Chung; Liao, Ming-Hui; Chang, Hsueh-Wei

    2014-04-01

    Most species of penguins are sexual monomorphic and therefore it is difficult to visually identify their genders for monitoring population stability in terms of sex ratio analysis. In this study, we evaluated the suitability using melting curve analysis (MCA) for high-throughput gender identification of penguins. Preliminary test indicated that the Griffiths's P2/P8 primers were not suitable for MCA analysis. Based on sequence alignment of Chromo-Helicase-DNA binding protein (CHD)-W and CHD-Z genes from four species of penguins (Pygoscelis papua, Aptenodytes patagonicus, Spheniscus magellanicus, and Eudyptes chrysocome), we redesigned forward primers for the CHD-W/CHD-Z-common region (PGU-ZW2) and the CHD-W-specific region (PGU-W2) to be used in combination with the reverse Griffiths's P2 primer. When tested with P. papua samples, PCR using P2/PGU-ZW2 and P2/PGU-W2 primer sets generated two amplicons of 148- and 356-bp, respectively, which were easily resolved in 1.5% agarose gels. MCA analysis indicated the melting temperature (Tm) values for P2/PGU-ZW2 and P2/PGU-W2 amplicons of P. papua samples were 79.75°C-80.5°C and 81.0°C-81.5°C, respectively. Females displayed both ZW-common and W-specific Tm peaks, whereas male was positive only for ZW-common peak. Taken together, our redesigned primers coupled with MCA analysis allows precise high throughput gender identification for P. papua, and potentially for other penguin species such as A. patagonicus, S. magellanicus, and E. chrysocome as well.

  19. Decline curve analysis of production data from The Geysers geothermal field

    SciTech Connect

    Ripperda, M.; Bodvarsson, G.S.

    1987-01-01

    Production data for over two hundred wells at The Geysers geothermal field were compiled and analyzed. Decline curves for groups of wells with 5, 10, and 40 acre spacing are presented and compared to curves published previously by Budd (1972) and Dykstra (1981). Decline curves for several individual wells and leases are discussed to illustrate the effects of well spacing and location, as well as the heterogeneous nature of the reservoir.

  20. Decline Curve Analysis of Production Data from the Geysers Geothermal Field

    SciTech Connect

    Ripperda, M.; Bodvarsson, G.S.

    1987-01-20

    Production data for over two hundred wells at The Geysers geothermal field were compiled and analysed. Decline curves for groups of wells with 5, 10, and 40 acre spacing are presented and compared to curves published previously by Budd (1972) and Dykstra (1981). Decline curves for several individual wells and leases are discussed to illustrate the effects of well spacing and location, as well as the heterogeneous nature of the reservoir. 6 figs., 1 tab., 10 refs.

  1. Predicting the probability of successful efficacy of a dissociated agonist of the glucocorticoid receptor from dose-response analysis.

    PubMed

    Conrado, Daniela J; Krishnaswami, Sriram; Shoji, Satoshi; Kolluri, Sheela; Hey-Hadavi, Judith; McCabe, Dorothy; Rojo, Ricardo; Tammara, Brinda K

    2016-06-01

    PF-04171327 is a dissociated agonist of the glucocorticoid receptor (DAGR) being developed to retain anti-inflammatory efficacy while reducing unwanted effects. Our aim was to conduct a longitudinal dose-response analysis to identify the DAGR doses with efficacy similar to or greater than prednisone 10 mg once daily (QD). The data included were from a Phase 2, randomized, double-blind, parallel-group study in 323 subjects with active rheumatoid arthritis on a background of methotrexate. Subjects received DAGR 1, 5, 10 or 15 mg, prednisone 5 or 10 mg, or placebo QD for 8 weeks. The Disease Activity Score 28-4 calculated using C-Reactive Protein (DAS28-4 CRP) was the efficacy endpoint utilized in this dose-response model. For DAGR, the maximum effect (Emax) on DAS28-4 CRP was estimated to be -1.2 points (95 % CI -1.7, -0.84), and the evaluated dose range provided 31-87 % of the Emax; for prednisone 5 and 10 mg, the estimated effects were -0.27 (95 % CI -0.55, 0.006) and -0.94 point (95 % CI -1.3, -0.59), respectively. Stochastic simulations indicated that the DAGR 1, 5, 10 and 15 mg have probabilities of 0.9, 29, 54 and 62 %, respectively, to achieve efficacy greater than prednisone 10 mg at week 8. DAGR 9 mg estimated probability was 50 % suggesting that DAGR ≥9 mg QD has an effect on DAS28-4 CRP comparable to or greater than prednisone 10 mg QD. This work informs dose selection for late-stage confirmatory trials. PMID:27178257

  2. Predicting the probability of successful efficacy of a dissociated agonist of the glucocorticoid receptor from dose-response analysis.

    PubMed

    Conrado, Daniela J; Krishnaswami, Sriram; Shoji, Satoshi; Kolluri, Sheela; Hey-Hadavi, Judith; McCabe, Dorothy; Rojo, Ricardo; Tammara, Brinda K

    2016-06-01

    PF-04171327 is a dissociated agonist of the glucocorticoid receptor (DAGR) being developed to retain anti-inflammatory efficacy while reducing unwanted effects. Our aim was to conduct a longitudinal dose-response analysis to identify the DAGR doses with efficacy similar to or greater than prednisone 10 mg once daily (QD). The data included were from a Phase 2, randomized, double-blind, parallel-group study in 323 subjects with active rheumatoid arthritis on a background of methotrexate. Subjects received DAGR 1, 5, 10 or 15 mg, prednisone 5 or 10 mg, or placebo QD for 8 weeks. The Disease Activity Score 28-4 calculated using C-Reactive Protein (DAS28-4 CRP) was the efficacy endpoint utilized in this dose-response model. For DAGR, the maximum effect (Emax) on DAS28-4 CRP was estimated to be -1.2 points (95 % CI -1.7, -0.84), and the evaluated dose range provided 31-87 % of the Emax; for prednisone 5 and 10 mg, the estimated effects were -0.27 (95 % CI -0.55, 0.006) and -0.94 point (95 % CI -1.3, -0.59), respectively. Stochastic simulations indicated that the DAGR 1, 5, 10 and 15 mg have probabilities of 0.9, 29, 54 and 62 %, respectively, to achieve efficacy greater than prednisone 10 mg at week 8. DAGR 9 mg estimated probability was 50 % suggesting that DAGR ≥9 mg QD has an effect on DAS28-4 CRP comparable to or greater than prednisone 10 mg QD. This work informs dose selection for late-stage confirmatory trials.

  3. Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications.

    PubMed

    Tsiatis, Athanasios C; Norris-Kirby, Alexis; Rich, Roy G; Hafez, Michael J; Gocke, Christopher D; Eshleman, James R; Murphy, Kathleen M

    2010-07-01

    Mutations in codons 12 and 13 of the KRAS oncogene are relatively common in colorectal and lung adenocarcinomas. Recent data indicate that these mutations result in resistance to anti-epidermal growth factor receptor therapy. Therefore, we assessed Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS codon 12/13 mutations in formalin-fixed paraffin-embedded samples, including 58 primary and 42 metastatic colorectal adenocarcinomas, 63 primary and 17 metastatic lung adenocarcinomas, and 20 normal colon samples. Of 180 tumor samples, 62.2% were KRAS mutant positive, and 37.8% were negative. Melting curve analysis yielded no false positive or false negative results, but had 10% equivocal calls. Melting curve analysis also resulted in 4 cases with melting curves inconsistent with either wild-type or codon 12/13 mutations. These patterns were generated from samples with double mutants in codons 12/13 and with mutations outside of codons 12/13. Pyrosequencing yielded no false positive or false negative results as well. However, two samples from one patient yielded a pyrogram that was flagged as abnormal, but the mutation subtype could not be determined. Finally, using an electronic cutoff of 10%, Sanger sequencing showed 11.1% false positives and 6.1% false negatives. In our hands, the limit of detection for Sanger sequencing, pyrosequencing, and melting curve analysis was approximately 15 to 20%, 5%, and 10% mutant alleles, respectively. PMID:20431034

  4. Non-linear multivariate curve resolution analysis of voltammetric pH titrations.

    PubMed

    Díaz Cruz, José Manuel; Sanchís, Josep; Chekmeneva, Elena; Ariño, Cristina; Esteban, Miquel

    2010-07-01

    A new chemometric approach is put forward, dealing with the non-linear behaviour observed in the multivariate curve resolution (MCR) analysis of certain overlapping voltammetric signals obtained in titrations of metal complexes where pH is progressively changed. In such cases, non-reversible reduction signals move along the potential axis as a consequence of the involvement of H(+)-ions in the electrochemical process and cause a dramatic loss of linearity, which hinders accurate MCR analysis. The method proposed is based on the least-squares fitting of peak potential vs. pH datasets to parametric linear and sigmoid functions through the decomposition of the data matrix into both a concentration profile matrix and a unit signal matrix, in a similar way as in the alternating least-squares algorithm of MCR (ALS). Such calculations are carried out through several home-made Matlab programs which are freely available as Supplementary Material of the present work. The fitted parameters, along with the evolution of resolved concentrations and potential shifts with pH, provide valuable information on the complexation/reduction processes. The method is tested first on the relatively simple Cd(II)-NTA system and then applied to the study of the binding of Cd(II)-ions by glutathione (gamma-Glu-Cys-Gly, GSH) and the phytochelatin PC(2) ((gamma-Glu-Cys)(2)-Gly).

  5. THE XMM-NEWTON/EPIC X-RAY LIGHT CURVE ANALYSIS OF WR 6

    SciTech Connect

    Ignace, R.; Gayley, K. G.; Hamann, W.-R.; Oskinova, L. M.; Huenemoerder, D. P.; Pollock, A. M. T.; McFall, M.

    2013-09-20

    We obtained four pointings of over 100 ks each of the well-studied Wolf-Rayet star WR 6 with the XMM-Newton satellite. With a first paper emphasizing the results of spectral analysis, this follow-up highlights the X-ray variability clearly detected in all four pointings. However, phased light curves fail to confirm obvious cyclic behavior on the well-established 3.766 day period widely found at longer wavelengths. The data are of such quality that we were able to conduct a search for event clustering in the arrival times of X-ray photons. However, we fail to detect any such clustering. One possibility is that X-rays are generated in a stationary shock structure. In this context we favor a corotating interaction region (CIR) and present a phenomenological model for X-rays from a CIR structure. We show that a CIR has the potential to account simultaneously for the X-ray variability and constraints provided by the spectral analysis. Ultimately, the viability of the CIR model will require both intermittent long-term X-ray monitoring of WR 6 and better physical models of CIR X-ray production at large radii in stellar winds.

  6. Impact Analysis of Embedded Delamination Location in Hybrid Curved Laminated Composite Stiffened Panel

    NASA Astrophysics Data System (ADS)

    Naini, Jeevan Kumar; P, Ramesh Babu

    2016-08-01

    Modern, aero structures are predominantly of curved construction characterized by a skin and stiffeners. The latest generation of large passenger aircraft also uses mostly composite material in their primary structure and there is trend towards the utilization of bonding of subcomponents. The presence of delamination is a major problem in composite laminated panels and so, it is of great concern to both the academic and aeronautical industrial worlds Indeed delamination can strongly affect the material strength and, sometimes, can cause their breaking up in service. A Pre-damaged configuration is loaded to study the delamination location and mode for delamination initiation and propagation. A parametric study is conducted to investigate the effect of the location of the delamination propagation when delamination is embedded inbetween plies of the skin-stiffener interface, with the cases i) delamination located at front and inbetween plies of the skin-stiffener interface ii) delamination located in middle and inbetween plies of the skin-stiffener interface iii) delamination located at the end and inbetween plies of the skin- stiffener interface. Further the influence of the location of the delamination on load carrying capacity of the panel is investigated. The effect of location of debonds on crack growth and collapse behavior is analyzed using analysis tool. An analysis tool is applied that includes an approach for predicting interlaminar damage initiation and interlaminar damage growth as well as in-plane damage mechanisms to predict the design of defect free panel.

  7. Modeling and regression analysis of semiochemical dose-response curves of insect antennal reception and behavior

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Dose-response curves with semiochemicals are reported in many articles in insect chemical ecology regarding neurophysiology and behavioral bioassays. Most such curves are shown in figures where the x-axis has order of magnitude increases in dosages versus responses on the y-axis represented by point...

  8. Imaging the shallow subsurface with surface waves: dispersion curve analysis versus full waveform inversion

    NASA Astrophysics Data System (ADS)

    Andrés Pérez Solano, Carlos; Donno, Daniela; Strobbia, Claudio; Chauris, Hervé

    2014-05-01

    Seismic surface wave analysis is a standard tool in geotechnical engineering for imaging the shallow subsurface. Most current surface wave analysis methods assume a horizontally layered medium, and estimate the near-surface shear velocity profile from dispersion curves, which are picked on frequency-wavenumber (f-k) gathers and then inverted using 1D modelling approaches. Media containing high velocity contrasts and irregular lateral variations might be difficult to be handled with the local 1D approximation. For 2D model estimation, full waveform inversion (FWI) is an alternative and can estimate high resolution models. The classical FWI objective function consists of the least-squares misfit between observed and modelled shot gathers (Tarantola, 1986). Classical FWI needs an accurate initial model for achieving convergence. Data sets containing surface waves could be inverted, without falling into secondary minima, if the data contains sufficiently low frequencies and large offsets such that multi-scale and time windowing approaches can be applied. We propose to invert surface waves with an alternative FWI-based approach that uses a modified objective function. It is based on the least-squares misfit between the absolute value of the f-k transform of windowed shot gathers. We refer to this approach as the windowed-Amplitude Waveform Inversion (w-AWI). Some secondary minima problems are mitigated: the choice of an initial model is easier in w-AWI than in FWI. The alternative objective function is intermediary between the one used in the 1D inversion approach (dispersion curves) and classical FWI. As most of the phase information is neglected in w-AWI, we use it as a first step before classical FWI. This sequential inversion approach using w-AWI followed by classical FWI aims at estimating a high-resolution near-surface velocity model, by explaining the complete elastic wavefield, even when the initial velocity model is far from the exact one. The proposed approach

  9. An analysis of watershed hydrological double mass curve based on elasticity index

    NASA Astrophysics Data System (ADS)

    Liu, Wenzhao; Ning, Tingting; Lin, Wen; Cheng, Liping; Han, Xiaoyang

    2016-04-01

    The method of double mass curve (DMC) is often used in the analysis of the consistency of hydro-meteorological factors and their inter-annual variations. The trend and slope of DMC are the focus of general concern. By taking the DMC of annual precipitation-runoff in a watershed as an example, this paper analyzed the characteristics of DMC variations by means of the elasticity index obtained by the curve slope divided by the ratio of accumulated runoff to accumulated precipitation at corresponding location. Using a year as a time step, the index was further simplified to be the ratio of annual runoff coefficient to the runoff coefficient averaged over the period from starting year to computing year. An elasticity index greater than, less than, or equal to one indicated rising, decline, or stability of average annual runoff coefficient, respectively. Variation trend of elasticity index was analyzed to extract the information on the years with significant change and then, dominant factors and their impacts could be enquired further. The Jinghe River is located in the middle reaches of the Yellow River, being the largest tributary of the Weihe River. The elasticity index was used to analyze the DMC of annual precipitation-runoff on the scale of water year for the Jinghe River watershed from 1961 to 2012 and the two years of 1971 and 1997 were first chosen as the years showing abrupt changes. The elasticity indices in three periods separated by the two years in the past 50 years averaged 1.08, 0.89 and 0.64 and annual runoff coefficients, 0.08, 0.07 and 0.05, respectively. The human activities disturbing underlying surface were found to be the important factor responsible for the remarkable decline of runoff coefficient. The large-scale comprehensive control of soil erosion and the adjustment of landuse structure had made some achievements in the recent twenty years. However, their disturbing effects on underlying surface interacted with the impacts of climate change

  10. BEER Analysis of Kepler and CoRoT Light Curves. II. Evidence for Superrotation in the Phase Curves of Three Kepler Hot Jupiters

    NASA Astrophysics Data System (ADS)

    Faigler, S.; Mazeh, T.

    2015-02-01

    We analyzed the Kepler light curves of four transiting hot Jupiter systems—KOI-13, HAT-P-7, TrES-2, and Kepler-76, which show BEaming, Ellipsoidal, and Reflection (BEER) phase modulations. The mass of the four planets can be estimated from either the beaming or the ellipsoidal amplitude, given the mass and radius of their parent stars. For KOI-13, HAT-P-7, and Kepler-76 we find that the beaming-based planetary mass estimate is larger than the mass estimated from the ellipsoidal amplitude, consistent with previous studies. This apparent discrepancy may be explained by equatorial superrotation of the planet atmosphere, which induces an angle shift of the planet reflection/emission phase modulation, as was suggested for Kepler-76 in the first paper of this series. We propose a modified BEER model that supports superrotation, assuming either a Lambertian or geometric reflection/emission phase function, and provides a photometry-consistent estimate of the planetary mass. Our analysis shows that for Kepler-76 and HAT-P-7, the Lambertian superrotation BEER model is highly preferable over an unshifted null model, while for KOI-13 it is preferable only at a 1.4σ level. For TrES-2 we do not find such preference. For all four systems the Lambertian superrotation model mass estimates are in excellent agreement with the planetary masses derived from, or constrained by, radial velocity measurements. This makes the Lambertian superrotation BEER model a viable tool for estimating the masses of hot Jupiters from photometry alone. We conclude that hot Jupiter superrotation may be a common phenomenon that can be detected in the visual light curves of Kepler.

  11. BEER ANALYSIS OF KEPLER AND CoRoT LIGHT CURVES. II. EVIDENCE FOR SUPERROTATION IN THE PHASE CURVES OF THREE KEPLER HOT JUPITERS

    SciTech Connect

    Faigler, S.; Mazeh, T.

    2015-02-10

    We analyzed the Kepler light curves of four transiting hot Jupiter systems—KOI-13, HAT-P-7, TrES-2, and Kepler-76, which show BEaming, Ellipsoidal, and Reflection (BEER) phase modulations. The mass of the four planets can be estimated from either the beaming or the ellipsoidal amplitude, given the mass and radius of their parent stars. For KOI-13, HAT-P-7, and Kepler-76 we find that the beaming-based planetary mass estimate is larger than the mass estimated from the ellipsoidal amplitude, consistent with previous studies. This apparent discrepancy may be explained by equatorial superrotation of the planet atmosphere, which induces an angle shift of the planet reflection/emission phase modulation, as was suggested for Kepler-76 in the first paper of this series. We propose a modified BEER model that supports superrotation, assuming either a Lambertian or geometric reflection/emission phase function, and provides a photometry-consistent estimate of the planetary mass. Our analysis shows that for Kepler-76 and HAT-P-7, the Lambertian superrotation BEER model is highly preferable over an unshifted null model, while for KOI-13 it is preferable only at a 1.4σ level. For TrES-2 we do not find such preference. For all four systems the Lambertian superrotation model mass estimates are in excellent agreement with the planetary masses derived from, or constrained by, radial velocity measurements. This makes the Lambertian superrotation BEER model a viable tool for estimating the masses of hot Jupiters from photometry alone. We conclude that hot Jupiter superrotation may be a common phenomenon that can be detected in the visual light curves of Kepler.

  12. Qualitative and quantitative analysis of complex temperature-programmed desorption data by multivariate curve resolution

    NASA Astrophysics Data System (ADS)

    Rodríguez-Reyes, Juan Carlos F.; Teplyakov, Andrew V.; Brown, Steven D.

    2010-10-01

    The substantial amount of information carried in temperature-programmed desorption (TPD) experiments is often difficult to mine due to the occurrence of competing reaction pathways that produce compounds with similar mass spectrometric features. Multivariate curve resolution (MCR) is introduced as a tool capable of overcoming this problem by mathematically detecting spectral variations and correlations between several m/z traces, which is later translated into the extraction of the cracking pattern and the desorption profile for each desorbate. Different from the elegant (though complex) methods currently available to analyze TPD data, MCR analysis is applicable even when no information regarding the specific surface reaction/desorption process or the nature of the desorbing species is available. However, when available, any information can be used as constraints that guide the outcome, increasing the accuracy of the resolution. This approach is especially valuable when the compounds desorbing are different from what would be expected based on a chemical intuition, when the cracking pattern of the model test compound is difficult or impossible to obtain (because it could be unstable or very rare), and when knowing major components desorbing from the surface could in more traditional methods actually bias the quantification of minor components. The enhanced level of understanding of thermal processes achieved through MCR analysis is demonstrated by analyzing three phenomena: i) the cryogenic desorption of vinyltrimethylsilane from silicon, an introductory system where the known multilayer and monolayer components are resolved; ii) acrolein hydrogenation on a bimetallic Pt-Ni-Pt catalyst, where a rapid identification of hydrogenated products as well as other desorbing species is achieved, and iii) the thermal reaction of Ti[N(CH 3) 2] 4 on Si(100), where the products of surface decomposition are identified and an estimation of the surface composition after the

  13. The role of Soil Water Retention Curve in slope stability analysis in unsaturated and heterogeneous soils.

    NASA Astrophysics Data System (ADS)

    Antinoro, Chiara; Arnone, Elisa; Noto, Leonardo V.

    2015-04-01

    The mechanisms of rainwater infiltration causing slope instability had been analyzed and reviewed in many scientific works. Rainwater infiltration into unsaturated soil increases the degree of saturation, hence affecting the shear strength properties and thus the probability of slope failure. It has been widely proved that the shear strength properties change with the soil water suction in unsaturated soils; therefore, the accuracy to predict the relationship between soil water content and soil water suction, parameterized by the soil-water characteristic curve, has significant effects on the slope stability analysis. The aim of this study is to investigate how the characterization of SWRC of differently structured unsaturated soils affects the slope stability on a simple infinite slope. In particular, the unimodal and bimodal distributions of the soil pore size were compared. Samples of 40 soils, highly different in terms of structure and texture, were collected and used to calibrate two bimodal SWRCs, i.e. Ross and Smettem (1993) and Dexter et al., (2008). The traditional unimodal van Genuchten (1980) model was also applied for comparison. Slope stability analysis was conducted in terms of Factor of Safety (FS) by applying the infinite slope model for unsaturated soils. In the used formulation, the contribution of the suction effect is tuned by a parameter 'chi' in a rate proportional to the saturation conditions. Different parameterizations of this term were also compared and analyzed. Results indicated that all three SWRC models showed good overall performance in fitting the sperimental SWRCs. Both the RS and DE models described adequately the water retention data for soils with a bimodal behavior confirmed from the analysis of pore size distribution, but the best performance was obtained by DE model confirmed. In terms of FS, the tree models showed very similar results as soil moisture approached to the saturated condition; however, within the residual zone

  14. Selecting a linear mixed model for longitudinal data: repeated measures analysis of variance, covariance pattern model, and growth curve approaches.

    PubMed

    Liu, Siwei; Rovine, Michael J; Molenaar, Peter C M

    2012-03-01

    With increasing popularity, growth curve modeling is more and more often considered as the 1st choice for analyzing longitudinal data. Although the growth curve approach is often a good choice, other modeling strategies may more directly answer questions of interest. It is common to see researchers fit growth curve models without considering alterative modeling strategies. In this article we compare 3 approaches for analyzing longitudinal data: repeated measures analysis of variance, covariance pattern models, and growth curve models. As all are members of the general linear mixed model family, they represent somewhat different assumptions about the way individuals change. These assumptions result in different patterns of covariation among the residuals around the fixed effects. In this article, we first indicate the kinds of data that are appropriately modeled by each and use real data examples to demonstrate possible problems associated with the blanket selection of the growth curve model. We then present a simulation that indicates the utility of Akaike information criterion and Bayesian information criterion in the selection of a proper residual covariance structure. The results cast doubt on the popular practice of automatically using growth curve modeling for longitudinal data without comparing the fit of different models. Finally, we provide some practical advice for assessing mean changes in the presence of correlated data.

  15. Subunit dissociation in fish hemoglobins.

    PubMed

    Edelstein, S J; McEwen, B; Gibson, Q H

    1976-12-10

    solutions containing guanidine hydrochloride indicated that there are changes in both the absolute rates and the proportions of the fast and slow components, which along with other factors complicated the analysis of the data in terms of dissociation constants. Measurements were also made in solutions containing urea to promote dissociation, but with this agent very high concentrations (about 6 M) were required to give measureable dissociation and the fish hemoglobins were unstable under these conditions, with appreciable loss of absorbance spectra in both the sedimentation and kinetic experiments. PMID:1002703

  16. A BAYESIAN APPROACH TO THE ANALYSIS OF TIME SYMMETRY IN LIGHT CURVES: RECONSIDERING SCORPIUS X-1 OCCULTATIONS

    SciTech Connect

    Blocker, Alexander W.; Protopapas, Pavlos; Alcock, Charles R.

    2009-08-20

    We present a new approach to the analysis of time symmetry in light curves, such as those in the X-ray at the center of the Scorpius X-1 occultation debate. Our method uses a new parameterization for such events (the bilogistic event profile) and provides a clear, physically relevant characterization of each event's key features. We also demonstrate a Markov chain Monte Carlo algorithm to carry out this analysis, including a novel independence chain configuration for the estimation of each event's location in the light curve. These tools are applied to the Scorpius X-1 light curves presented in Chang et al., providing additional evidence based on the time series that the events detected thus far are most likely not occultations by trans-Neptunian objects.

  17. M DWARFS IN SLOAN DIGITAL SKY SURVEY STRIPE 82: PHOTOMETRIC LIGHT CURVES AND FLARE RATE ANALYSIS

    SciTech Connect

    Kowalski, Adam F.; Hawley, Suzanne L.; Hilton, Eric J.; Becker, Andrew C.; Sesar, Branimir; West, Andrew A.; Bochanski, John J.

    2009-08-15

    We present a flare rate analysis of 50,130 M dwarf light curves in Sloan Digital Sky Survey Stripe 82. We identified 271 flares using a customized variability index to search {approx}2.5 million photometric observations for flux increases in the u and g bands. Every image of a flaring observation was examined by eye and with a point-spread function-matching and image subtraction tool to guard against false positives. Flaring is found to be strongly correlated with the appearance of H{alpha} in emission in the quiet spectrum. Of the 99 flare stars that have spectra, we classify eight as relatively inactive. The flaring fraction is found to increase strongly in stars with redder colors during quiescence, which can be attributed to the increasing flare visibility and increasing active fraction for redder stars. The flaring fraction is strongly correlated with |Z| distance such that most stars that flare are within 300 pc of the Galactic plane. We derive flare u-band luminosities and find that the most luminous flares occur on the earlier-type m dwarfs. Our best estimate of the lower limit on the flaring rate (averaged over Stripe 82) for flares with {delta}u {>=} 0.7 mag on stars with u < 22 is 1.3 flares hr{sup -1} deg{sup -2} but can vary significantly with the line of sight.

  18. M Dwarfs in Sloan Digital Sky Survey Stripe 82: Photometric Light Curves and Flare Rate Analysis

    NASA Astrophysics Data System (ADS)

    Kowalski, Adam F.; Hawley, Suzanne L.; Hilton, Eric J.; Becker, Andrew C.; West, Andrew A.; Bochanski, John J.; Sesar, Branimir

    2009-08-01

    We present a flare rate analysis of 50,130 M dwarf light curves in Sloan Digital Sky Survey Stripe 82. We identified 271 flares using a customized variability index to search ~2.5 million photometric observations for flux increases in the u and g bands. Every image of a flaring observation was examined by eye and with a point-spread function-matching and image subtraction tool to guard against false positives. Flaring is found to be strongly correlated with the appearance of Hα in emission in the quiet spectrum. Of the 99 flare stars that have spectra, we classify eight as relatively inactive. The flaring fraction is found to increase strongly in stars with redder colors during quiescence, which can be attributed to the increasing flare visibility and increasing active fraction for redder stars. The flaring fraction is strongly correlated with |Z| distance such that most stars that flare are within 300 pc of the Galactic plane. We derive flare u-band luminosities and find that the most luminous flares occur on the earlier-type m dwarfs. Our best estimate of the lower limit on the flaring rate (averaged over Stripe 82) for flares with Δu >= 0.7 mag on stars with u < 22 is 1.3 flares hr-1 deg-2 but can vary significantly with the line of sight. Based on observations obtained with the Apache Point Observatory 3.5 m telescope, which is owned and operated by the Astrophysical Research Consortium.

  19. Analysis of HAT-P-2b Warm Spitzer Full Orbit Light Curve

    NASA Astrophysics Data System (ADS)

    Lewis, Nikole; Knuston, H.; Showman, A. P.; Fortney, J. J.; Agol, E.; Burrows, A.; Charbonneau, D.; Cowan, N. B.; Deming, D.; Desert, J.; Langton, J.; Laughlin, G.; Mighell, K. J.

    2011-05-01

    The Spitzer warm mission has already greatly expanded the field of exoplanet characterization with over 3000 hours of time dedicated to exoplanet observations. Observations of eclipsing systems with Spitzer are at the heart of these advances, as they allow us to move beyond simple mass and period estimates to determine planetary radius, dayside emission, and emission variations as a function of orbital phase. The eclipsing system HAT-P-2 is of special interest because the massive Jovian sized planet in this system is on a highly eccentric orbit (e=0.5171). Because HAT-P-2b's orbit is eccentric, the planet is subject to time variable heating and probable non-synchronous rotation. Circulation patterns that we expect to develop in HAT-P-2b's atmosphere will likely vary with both planetary local time and orbital phase. Here we present an analysis of a full orbit light curve from the HAT-P-2 system obtained during the most recent cycle of the Spitzer warm mission and discuss the constraints it imposes on the atmospheric circulation of HAT-P-2b. Support for this work was provided by NASA.

  20. High-Resolution Melting Curve Analysis for Identification of Pasteurellaceae Species in Experimental Animal Facilities.

    PubMed

    Miller, Manuel; Zorn, Julia; Brielmeier, Markus

    2015-01-01

    Pasteurellaceae are among the most prevalent bacterial pathogens isolated from mice housed in experimental animal facilities. Reliable detection and differentiation of Pasteurellaceae are essential for high-quality health monitoring. In this study, we combined a real-time PCR assay amplifying a variable region in the 16S rRNA sequence with high-resolution melting curve analysis (HRM) to identify and differentiate among the commonly isolated species Pasteurella pneumotropica biotypes "Jawetz" and "Heyl", Actinobacillus muris, and Haemophilus influenzaemurium. We used a set of six reference strains for assay development, with the melting profiles of these strains clearly distinguishable due to DNA sequence variations in the amplicon. For evaluation, we used real-time PCR/HRM to test 25 unknown Pasteurellaceae isolates obtained from an external diagnostic laboratory and found the results to be consistent with those of partial 16S rRNA sequencing. The real-time PCR/HRM method provides a sensitive, rapid, and closed-tube approach for Pasteurellaceae species identification for health monitoring of laboratory mice. PMID:26556281

  1. Analysis of Curved Sandwich Panels Subjected to Combined Temperature Gradient and Mechanical Loads

    NASA Technical Reports Server (NTRS)

    Noor, Ahmed K.; Starnes, James H., Jr.; Peters, Jeanne M.

    1998-01-01

    The results of a detailed study of the nonlinear response of curved sandwich panels with composite face sheets and subjected to a temperature gradient through-the-thickness combined with mechanical loadings are presented. The analysis is based on a first-order shear-deformation Sanders-Budiansky type theory with the effects of large displacements, moderate rotations, transverse shear deformation and laminated anisotropic material behavior included. A mixed formulation is used with the fundamental unknowns consisting of the generalized displacements and the stress resultants of the panel. The nonlinear displacements, strain energy, principal strains, transverse shear stresses, transverse shear strain energy density, and their hierarchical sensitivity coefficients are evaluated. The hierarchical sensitivity coefficients measure the sensitivity of the nonlinear response to variations in the panel parameters, the effective properties of the face sheet layers and the core, and the micromechanical parameters. Numerical results are presented for cylindrical panels subjected to combined pressure loading, edge shortening or extension, edge shear and a temperature gradient through the thickness. The results show the effects of variations in the loading and the panel aspect ratio, on the nonlinear response and its sensitivity to changes in the various panel, effective layer and micromechanical parameters.

  2. Reliability analysis of laser ultrasonics for train axle diagnostics based on model assisted POD curves

    NASA Astrophysics Data System (ADS)

    Malik, M. S.; Cavuto, A.; Martarelli, M.; Pandarese, G.; Revel, G. M.

    2014-05-01

    High speed train axles are integrated for a lifetime and it is time and resource consuming to conduct in service inspection with high accuracy. Laser ultrasonics is a proposed solution as a subset of non-contact measuring methods effective also for hard to reach areas and even recently proved to be effective using Laser Doppler Vibrometer (LDV) or air-coupled probes in reception. A reliability analysis of laser ultrasonics for this specific application is here performed. The research is mainly based on numerical study of the effect of high energy laser pulses on the surface of a steel axle and of the behavior of the ultrasonic waves in detecting possible defects. Probability of Detection (POD) concept is used as an estimated reliability of the inspection method. In particular Model Assisted Probability of Detection (MAPOD), a modified form of POD where models are used to infer results for making a decisive statistical approach of POD curve, is here adopted. This paper implements this approach by taking the inputs from limited experiments conducted on a high speed train axle using laser ultrasonics (source pulsed Nd:Yag, reception by high-frequency LDV) to calibrate a multiphysics FE model and by using the calibrated model to generate data samples statistically representative of damaged train axles. The simulated flaws are in accordance with the real defects present on the axle. A set of flaws of different depth has been modeled in order to assess the laser ultrasonics POD for this specific application.

  3. BEER analysis of Kepler and CoRoT light curves. III. Spectroscopic confirmation of seventy new beaming binaries discovered in CoRoT light curves

    NASA Astrophysics Data System (ADS)

    Tal-Or, L.; Faigler, S.; Mazeh, T.

    2015-08-01

    Context. The BEER algorithm searches stellar light curves for the BEaming, Ellipsoidal, and Reflection photometric modulations that are caused by a short-period companion. These three effects are typically of very low amplitude and can mainly be detected in light curves from space-based photometers. Unlike eclipsing binaries, these effects are not limited to edge-on inclinations. Aims: Applying the algorithm to wide-field photometric surveys such as CoRoT and Kepler offers an opportunity to better understand the statistical properties of short-period binaries. It also widens the window for detecting intrinsically rare systems, such as short-period brown-dwarf and massive-planetary companions to main-sequence stars. Methods: Applying the search to the first five long-run center CoRoT fields, we identified 481 non-eclipsing candidates with periodic flux amplitudes of 0.5-87 mmag. Optimizing the Anglo-Australian-Telescope pointing coordinates and the AAOmega fiber-allocations with dedicated softwares, we acquired six spectra for 231 candidates and seven spectra for another 50 candidates in a seven-night campaign. Analysis of the red-arm AAOmega spectra, which covered the range of 8342-8842 Å, yielded a radial-velocity precision of ~1 km s-1. Spectra containing lines of more than one star were analyzed with the two-dimensional correlation algorithm TODCOR. Results: The measured radial velocities confirmed the binarity of seventy of the BEER candidates - 45 single-line binaries, 18 double-line binaries, and 7 diluted binaries. We show that red giants introduce a major source of false candidates and demonstrate a way to improve BEER's performance in extracting higher fidelity samples from future searches of CoRoT light curves. The periods of the confirmed binaries span a range of 0.3-10 days and show a rise in the number of binaries per ΔlogP toward longer periods. The estimated mass ratios of the double-line binaries and the mass ratios assigned to the single

  4. Contributions of water transfer energy to protein-ligand association and dissociation barriers: Watermap analysis of a series of p38α MAP kinase inhibitors.

    PubMed

    Pearlstein, Robert A; Sherman, Woody; Abel, Robert

    2013-09-01

    In our previous work, we proposed that desolvation and resolvation of the binding sites of proteins can serve as the slowest steps during ligand association and dissociation, respectively, and tested this hypothesis on two protein-ligand systems with known binding kinetics behavior. In the present work, we test this hypothesis on another kinetically-determined protein-ligand system-that of p38α and eight Type II BIRB 796 inhibitor analogs. The kon values among the inhibitor analogs are narrowly distributed (10⁴ ≤ kon ≤ 10⁵ M⁻¹ s⁻¹), suggesting a common rate-determining step, whereas the koff values are widely distributed (10⁻¹ ≤ koff ≤ 10⁻⁶ s⁻¹), suggesting a spectrum of rate-determining steps. We calculated the solvation properties of the DFG-out protein conformation using an explicit solvent molecular dynamics simulation and thermodynamic analysis method implemented in WaterMap to predict the enthalpic and entropic costs of water transfer to and from bulk solvent incurred upon association and dissociation of each inhibitor. The results suggest that the rate-determining step for association consists of the transfer of a common set of enthalpically favorable solvating water molecules from the binding site to bulk solvent. The rate-determining step for inhibitor dissociation consists of the transfer of water from bulk solvent to specific binding site positions that are unfavorably solvated in the apo protein, and evacuated during ligand association. Different sets of unfavorable solvation are evacuated by each ligand, and the observed dissociation barriers are qualitatively consistent with the calculated solvation free energies of those sets.

  5. Deformation Analysis of Curved Folds in the Southern Upper Magdalena Valley. Colombia

    NASA Astrophysics Data System (ADS)

    Jimenez, G.; Bayona, G. A.; Silva, C.; Rapalini, A.; Trindade, R.

    2008-12-01

    In the Upper Magdalena Valley of Colombia there are folds with changes in the strike of their axes (e.g La Hocha Anticline), the origin of which was studied by integrating field, paleomagnetic and magnetic anisotropy data. Two structural domains were defined: the northern is a symmetrical fold and has a strike N10W, whereas the southern is an asymmetrical fold and has a N30E strike. The principal fault is the San Jacinto Fault, which is a reverse fault with slikensides indicating also a horizontal component of displacement. In the hanging wall of the San Jacinto Fault Mesozoic rocks crops out forming an anticline, whereas in the footwall Cenozoic rocks with vertical and locally overturned beds are exposed. Four magnetic components were isolated, being the low coercivity/temperature component similar to the present field. A characteristic component isolated in Cretaceous and Cenozoic rocks is a pre-fold but post-Oligocene component (n=5, D=0.8, I=2.4, K=62.33, a95=9.8). Two characteristic components were isolated in Jurassic rocks. The directions of the first are similar between domains (north domain: n=10 D=20.7 I=35.6 K=13 a95=12.5; south domain: n=6 D=12 I=28.9 K=16 a95=9.5), suggesting no relationship between strike changes and declination variation. The other component has negative inclination (n=2 D=13.8 I=-27.1 K=61.42 a95=11.8) indicating a mean paleolatitude of 14.4S in Jurassic time. Paleomagnetic data suggest that the curved fold is controlled by the geometry of the paleobasin and support the northward translation of accreted terranes along the Western margin of South America during the Jurassic. Anisotropy of magnetic susceptibility analysis in Jurassic and Cretaceous rocks document three magnetic fabrics: (1) Undeformed fabrics are located in the back limb of La Hocha Anticline; (2) tectonics fabrics are associated to reverse fault planes in the north and south domains and indicated a relationship between the anisotropy ellipsoid with the local stress

  6. Influence of plasma conditions on the intensity ratio calibration curve during laser induced breakdown spectroscopy analysis.

    PubMed

    Kim, Chan-Kyu; In, Jung-Hwan; Lee, Seok-Hee; Jeong, Sungho

    2014-07-01

    Quantitative prediction of elemental concentration or concentration ratio of solid samples can be achieved by laser induced breakdown spectroscopy if a calibration curve that is little influenced by plasma conditions could be obtained. This work demonstrates that such a calibration curve is available for copper indium gallium diselenide (CuIn(1-x)Ga(x)Se₂) thin film solar cells for properly selected spectral lines. The possible changes of calibration curves based on the selected spectral lines are discussed in consideration of self-absorption in optically thick plasma and the dependency of spectral line properties on plasma temperature.

  7. Analysis of the U-B-V photoelectric light curves of the eclipsing binary GT CEP

    NASA Astrophysics Data System (ADS)

    Bartolini, C.; Bonifazi, A.; Milano, L.

    1984-03-01

    The authors analyse the UBV light curves of GT Cep with different methods of solution. Some difficulties arise from the peculiar morphology of the light curves. The authors discuss the set of results and finally adopt the solution they derived by the Wilson and Devinney direct method. The system results to be a semi-detached one and this fact partly justifies the observed peculiarities. Given their results, the authors question the physical reliability of different models representing the light curves of eclipsing binaries.

  8. Re-Analysis of the Solar Phase Curves of the Icy Galilean Satellites

    NASA Technical Reports Server (NTRS)

    Domingue, Deborah; Verbiscer, Anne

    1997-01-01

    Re-analysis of the solar phase curves of the icy Galilean satellites demonstrates that the quantitative results are dependent on the single particle scattering function incorporated into the photometric model; however, the qualitative properties are independent. The results presented here show that the general physical characteristics predicted by a Hapke model (B. Hapke, 1986, Icarus 67, 264-280) incorporating a two parameter double Henyey-Greenstein scattering function are similar to the predictions given by the same model incorporating a three parameter double Henyey-Greenstein scattering function as long as the data set being modeled has adequate coverage in phase angle. Conflicting results occur when the large phase angle coverage is inadequate. Analysis of the role of isotropic versus anisotropic multiple scattering shows that for surfaces as bright as Europa the two models predict very similar results over phase angles covered by the data. Differences arise only at those phase angles for which there are no data. The single particle scattering behavior between the leading and trailing hemispheres of Europa and Ganymede is commensurate with magnetospheric alterations of their surfaces. Ion bombardment will produce more forward scattering single scattering functions due to annealing of potential scattering centers within regolith particles (N. J. Sack et al., 1992, Icarus 100, 534-540). Both leading and trailing hemispheres of Europa are consistent with a high porosity model and commensurate with a frost surface. There are no strong differences in predicted porosity between the two hemispheres of Callisto, both are consistent with model porosities midway between that deduced for Europa and the Moon. Surface roughness model estimates predict that surface roughness increases with satellite distance from Jupiter, with lunar surface roughness values falling midway between those measured for Ganymede and Callisto. There is no obvious variation in predicted surface

  9. Development of synthetic velocity - depth damage curves using a Weighted Monte Carlo method and Logistic Regression analysis

    NASA Astrophysics Data System (ADS)

    Vozinaki, Anthi Eirini K.; Karatzas, George P.; Sibetheros, Ioannis A.; Varouchakis, Emmanouil A.

    2014-05-01

    Damage curves are the most significant component of the flood loss estimation models. Their development is quite complex. Two types of damage curves exist, historical and synthetic curves. Historical curves are developed from historical loss data from actual flood events. However, due to the scarcity of historical data, synthetic damage curves can be alternatively developed. Synthetic curves rely on the analysis of expected damage under certain hypothetical flooding conditions. A synthetic approach was developed and presented in this work for the development of damage curves, which are subsequently used as the basic input to a flood loss estimation model. A questionnaire-based survey took place among practicing and research agronomists, in order to generate rural loss data based on the responders' loss estimates, for several flood condition scenarios. In addition, a similar questionnaire-based survey took place among building experts, i.e. civil engineers and architects, in order to generate loss data for the urban sector. By answering the questionnaire, the experts were in essence expressing their opinion on how damage to various crop types or building types is related to a range of values of flood inundation parameters, such as floodwater depth and velocity. However, the loss data compiled from the completed questionnaires were not sufficient for the construction of workable damage curves; to overcome this problem, a Weighted Monte Carlo method was implemented, in order to generate extra synthetic datasets with statistical properties identical to those of the questionnaire-based data. The data generated by the Weighted Monte Carlo method were processed via Logistic Regression techniques in order to develop accurate logistic damage curves for the rural and the urban sectors. A Python-based code was developed, which combines the Weighted Monte Carlo method and the Logistic Regression analysis into a single code (WMCLR Python code). Each WMCLR code execution

  10. Differential proteomic analysis of lymphocytes treated with mycophenolic acid reveals caspase 3-induced cleavage of rho GDP dissociation inhibitor 2.

    PubMed

    Heller, Tanja; Asif, Abdul R; Petrova, Darinka Todorova; Doncheva, Yuliana; Wieland, E; Oellerich, Michael; Shipkova, Maria; Armstrong, Victor William

    2009-04-01

    The antiproliferative immunosuppressive drug mycophenolic acid (MPA) is an uncompetitive inhibitor of inosine monophosphate dehydrogenase, a key enzyme in de novo synthesis of purine nucleotides. The latter are not only required for synthesis of DNA and RNA but also are essential for the regulation of numerous cellular signaling pathways modulated by guanine nucleotide binding proteins (G proteins). We undertook an analysis of the influence of MPA on protein expression in a T-lymphoblast cell line (CCRF-CEM), which displays concentration-dependent inhibition of proliferation by MPA to obtain insight into the influence of MPA on the cellular proteome. Cells were stimulated with phorbol myristate acetate/ionomycin and incubated in the presence or absence of MPA. Two-dimensional electrophoresis and densitometric imaging revealed 11 differentially expressed protein spots (P < 0.05) on MPA treatment, 6 with increased and 5 with decreased abundance. After in-gel tryptic digestion, proteins were identified by quadrupole time-of-flight mass spectrometry. Proteins displaying increased abundance after MPA treatment included splicing factor arginine/serine-rich 2, prostaglandin E synthase 3, peptidyl-prolyl cis-trans isomerase A, and deoxyuridine 5'-triphosphate nucleotidohydrolase. Endoplasmin, proliferating cell nuclear antigen, acidic leucine-rich nuclear phosphoprotein 32 family member A, and cofilin 1 showed decreased abundance after MPA treatment. Three separate spots (1 decreased and 2 increased abundance) were identified as Rho guanosine diphosphate dissociation inhibitor 2 (Rho GDI 2) proteins. Western blotting with a monoclonal antibody directed against the Rho GDI 2 site cleaved by caspase 3 demonstrated 1 spot with increased abundance to be the caspase 3-cleaved product of Rho GDI 2 lacking the first 19 amino acids. Rho GDI 2 plays a central regulatory role in the activation of Rho guanosine triphosphatases that function as molecular switches in cell signaling

  11. Video meteor light curve analysis of Orionids and Geminids and developing a method for obtaining the absolute light curves of shower meteors from the single station data

    NASA Astrophysics Data System (ADS)

    Grašić, L.; Milanović, N.; Pavlović, D.

    2016-01-01

    We developed a method for obtaining the absolute light curves of the shower meteors from single station video data. We found that even though the height of a meteor atmospheric trajectory obtained by using this method may have a large error, the absolute light curve shape is preserved. We used our method to calculate the F parameters of the Orionid and Geminid light curves. The light curves were obtained from the single station video data by the instrument with a limiting sensitivity of 3.5m. We found that for our sample of the light curves the zenith distance of meteor radiant does not affect the F parameter for either of the two showers. The value of F parameter of the Orionids obtained in this paper matches the values obtained by other authors, whilst for the Geminids it is significantly different.

  12. Probing dissociative molecular dications by mapping vibrational wave functions

    SciTech Connect

    Puettner, R.; Sekushin, V.; Kaindl, G.; Arion, T.; Lischke, T.; Mucke, M.; Hergenhahn, U.; Foerstel, M.; Bradshaw, A. M.

    2011-04-15

    We present high-resolution photoelectron-Auger-electron coincidence spectra of methane (CH{sub 4}). Since the vibrational structure in the photoelectron spectrum is resolved, the Auger spectra corresponding to different vibrational levels can be separated. The seven final states of CH{sub 4}{sup 2+} are either dissociative or metastable, but in any case are populated in a repulsive part of their potential-energy curve via the Auger decay. The Auger line shapes can therefore be obtained by mapping the vibrational wave functions of the core-hole state into energy space. We have implemented this connection in the data analysis. By simultaneously fitting the different Auger spectra, detailed information on the energies of the dicationic states and their repulsive potential-energy curves is derived.

  13. Development of a viability standard curve for microencapsulated probiotic bacteria using confocal microscopy and image analysis software.

    PubMed

    Moore, Sarah; Kailasapathy, Kasipathy; Phillips, Michael; Jones, Mark R

    2015-07-01

    Microencapsulation is proposed to protect probiotic strains from food processing procedures and to maintain probiotic viability. Little research has described the in situ viability of microencapsulated probiotics. This study successfully developed a real-time viability standard curve for microencapsulated bacteria using confocal microscopy, fluorescent dyes and image analysis software.

  14. Enhancing the Psychological Well-Being of Elderly Individuals through Tai Chi Exercise: A Latent Growth Curve Analysis.

    ERIC Educational Resources Information Center

    Li, Fuzhong; Duncan, Terry E.; Duncan, Susan C.; McAuley, Edward; Chaumeton, Nigel R.; Harmer, Peter

    2001-01-01

    Examined whether a Tai Chi exercise program enhanced the psychological well-being of 98 elderly individuals. Analyzed repeated measures data about participants using latent growth curve analysis. Results indicate the beneficial effects of participation in the Tai Chi program. Discusses implications related to the exercise-psychological health…

  15. Self-Esteem Trajectories among Ethnic Minority Adolescents: A Growth Curve Analysis of the Patterns and Predictors of Change

    ERIC Educational Resources Information Center

    Greene, Melissa L.; Way, Niobe

    2005-01-01

    The current study presents a growth curve analysis of self-esteem among Black, Latino, and Asian American high school students. A series of hierarchical linear models were used to examine patterns and predictors of change in self-esteem over time. Results revealed an average increase in self-esteem with age. Although boys and girls experienced…

  16. Prediction Accuracy of the Washington and Illinois Risk Assessment Instruments: An Application of Receiver Operating Characteristic Curve Analysis.

    ERIC Educational Resources Information Center

    Camasso, Michael J.; Jagannathan, Radha

    1995-01-01

    Compares the predictive performances of the Illinois CANTS 17B and the Washington State Risk Matrix on a sample of New Jersey child protective services cases using logistic regression and receiver operating characteristic curve analysis. Both instruments predict case recidivism, closings, and substantiation with probabilities greater than chance.…

  17. Binding and dissociation kinetics using fractals: an analysis of electrostatic effects and randomly coupled and oriented coupled receptors on biosensor surfaces.

    PubMed

    Butala, Harshala D; Sadana, Ajit

    2004-03-15

    A fractal analysis is used to analyze the influence of: (a) electrostatic interactions on binding and dissociation rate coefficients for antibodies HH8, HH10, and HH26 in solution to hen egg-white lysozyme (HEL) immobilized on a sensor chip surface [Biophys. J. 83 (2002) 2946]; and (b) the binding and dissociation of recombinant Fab in solution to random NHS-coupled Cys-HEL and oriented thiol-coupled Cys-HEL immobilized on a sensor chip surface [Methods 20 (2000) 310]. Single- and dual-fractal models were employed to fit the data. Values of the binding and the dissociation rate coefficient(s) and the fractal dimensions were obtained from a regression analysis provided by Corel Quattro Pro 8.0 (Corel Corporation Limited, Ottawa, Canada. 1997). The binding rate coefficients are quite sensitive to the degree of heterogeneity on the sensor chip surface. It is of interest to compare the results obtained by the fractal analysis with that of the original analysis [Biophys. J. 83 (2002) 2946]. For example, as one goes from the binding of 21 nM HH10/HEL to the binding of 640 nM HH10/HEL(K97A), Sinha et al. [Biophys. J. 83 (2002) 29461 indicate that the enhancement of diffusional encounter rates may be due to 'electrostatic steering' (a long-range interaction). Our analysis indicates that there is an increase in the value of the fractal dimension, Df1 by a factor of 1.12 from a value of 2.133-2.385. This increase in the degree of heterogeneity on the surface leads to an increase in the binding rate coefficient, k1 by a factor of 1.59 from 12.92 to 20.57. The fractal analysis of binding and dissociation of recombinant Fab in solution to random NHS-coupled Cys-HEL and oriented thiol-coupled Cys-HEL immobilized on a sensor chip [Methods 20 (2000) 310] surface are consistent with the degree of heterogeneity present on the sensor chip surface for the random and the oriented case. As expected, the random case will exhibit a higher degree of heterogeneity than the oriented case

  18. Multilevel Models for the Analysis of Angle-Specific Torque Curves with Application to Master Athletes

    PubMed Central

    Carvalho, Humberto M

    2015-01-01

    The aim of this paper was to outline a multilevel modeling approach to fit individual angle-specific torque curves describing concentric knee extension and flexion isokinetic muscular actions in Master athletes. The potential of the analytical approach to examine between individual differences across the angle-specific torque curves was illustrated including between-individuals variation due to gender differences at a higher level. Torques in concentric muscular actions of knee extension and knee extension at 60º·s−1 were considered within a range of motion between 5º and 85º (only torques “truly” isokinetic). Multilevel time series models with autoregressive covariance structures with standard multilevel models were superior fits compared with standard multilevel models for repeated measures to fit angle-specific torque curves. Third and fourth order polynomial models were the best fits to describe angle-specific torque curves of isokinetic knee flexion and extension concentric actions, respectively. The fixed exponents allow interpretations for initial acceleration, the angle at peak torque and the decrement of torque after peak torque. Also, the multilevel models were flexible to illustrate the influence of gender differences on the shape of torque throughout the range of motion and in the shape of the curves. The presented multilevel regression models may afford a general framework to examine angle-specific moment curves by isokinetic dynamometry, and add to the understanding mechanisms of strength development, particularly the force-length relationship, both related to performance and injury prevention. PMID:26839603

  19. NON-COMPETITIVE PEAK DECAY ANALYSIS OF DRUG-PROTEIN DISSOCIATION BY HIGH-PERFORMANCE AFFINITY CHROMATOGRAPHY

    PubMed Central

    Chen, Jianzhong; Schiel, John E.; Hage, David S.

    2009-01-01

    The peak decay method is an affinity chromatographic technique that has been used to examine the dissociation of solutes from immobilized ligands in the presence of excess displacing agent. However, it can be difficult to find a displacing agent that does not interfere with detection of the eluting analyte. In this study, a non-competitive peak decay method was developed in which no displacing agent was required for analyte elution. This method was evaluated for the study of drug-protein interactions by using it along with high-performance affinity chromatography to measure the dissociation rate constants for R- and S-warfarin from columns containing immobilized human serum albumin (HSA). Several factors were considered in the optimization of this method, including the amount of applied analyte, the column size, and the flow rate. The dissociation rate constants for R- and S-warfarin from HSA were measured at several temperatures by this approach, giving values of 0.56 (± 0.01) and 0.66 (± 0.01) s−1 at pH 7.4 and 37°C. These results were in good agreement with previous values obtained by other methods. This approach is not limited to warfarin and HSA but could be employed in studying additional drug-protein interactions or other systems with weak-to-moderate binding. PMID:19472288

  20. Statistical model to perform error analysis of curve fits of wind tunnel test data using the techniques of analysis of variance and regression analysis

    NASA Technical Reports Server (NTRS)

    Alston, D. W.

    1981-01-01

    The considered research had the objective to design a statistical model that could perform an error analysis of curve fits of wind tunnel test data using analysis of variance and regression analysis techniques. Four related subproblems were defined, and by solving each of these a solution to the general research problem was obtained. The capabilities of the evolved true statistical model are considered. The least squares fit is used to determine the nature of the force, moment, and pressure data. The order of the curve fit is increased in order to delete the quadratic effect in the residuals. The analysis of variance is used to determine the magnitude and effect of the error factor associated with the experimental data.

  1. Second-Law Analysis of the Peristaltic Flow of an Incompressible Viscous Fluid in a Curved Channel

    NASA Astrophysics Data System (ADS)

    Narla, V. K.; Prasad, K. M.; Ramana Murthy, J. V.

    2016-03-01

    The present investigation extends a consideration of peristaltic flow in curved channels through the second-law analysis. The lubrication approximation is employed to linearize the momentum, energy, and entropy generation rate equations. The stream function and temperature distribution are used to calculate the entropy generation number and the Bejan number. It is shown that the entropy generation rate in a peristaltic pump increases with the occlusion parameter. The entropy generation increases at the upper wall and decreases near the lower wall of the peristaltic channel as the curvature parameter increases. A curved surface acts as a strong source of entropy generation.

  2. Periodicity Analysis of X-ray Light Curves of SS 433

    NASA Astrophysics Data System (ADS)

    Wang, J. Y.; Lu, X. L.; Zhao, Q. W.; Dong, D. Q.; Lao, B. Q.; Lu, Y.; Wei, Y. H.; Wu, X. C.; An, T.

    2016-03-01

    SS 433 is the only X-ray binary to date that was detected to have a pair of well-collimated jets, and its orbital period, super orbital period, and nutation period were all detected at the same time. The study on the periodic X-ray variabilities is helpful for understanding its dynamic process of the central engine and the correlation with other bands. In the present paper, two time series analysis techniques, Lomb-Scargle periodogram and weighted wavelet Z-transform, are employed to search for the periodicities from the Swift/BAT (Burst Alert Telescope)(15--50 keV) and RXTE/ASM (Rossi X-Ray Timing Explorer/All-Sky Monitor)(1.5--3, 3--5 and 5--12 keV) light curves of SS 433, and the Monte Carlo simulation is performed. For the 15--50 keV energy band, five significant periodic signals are detected, which are P_1(˜6.29 d), P_2 (˜6.54 d), P_3 (˜13.08 d), P_4 (˜81.50 d), and P_5 (˜162.30 d). For the 3--5 and 5--12 keV energy bands, periodic signals P_3 (˜13 d) and P_5 (˜162 d) are detected in both energy bands. However, for the 1.5--3 keV energy band, no significant periodic signal is detected. P_5 has the strongest periodic signal in the power spectrum for all the energy bands of 3--5, 5--12, and 15--50 keV, and it is consistent with that obtained by previous study in optical band. Further, due to the existence of relativistic radio jets, the X-ray and optical band variability of P_5 (˜162 d) is probably related to the precession of the relativistic jets. High coherence between X-ray and optical light curves may also imply that the X-ray and optical emissions are of the same physical origin. P_3 shows a good agreement with the orbital period (˜13.07 d) first obtained by previous study, and P_2 and P_4 are the high frequency harmonic components of P_3 and P_5, respectively. P_1 is detected from the power spectrum of 15--50 keV energy band only, and it is consistent with the systematic nutation period. As the power of energy band decreases (from hard X-ray to

  3. Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications.

    PubMed

    Ruijter, Jan M; Pfaffl, Michael W; Zhao, Sheng; Spiess, Andrej N; Boggy, Gregory; Blom, Jochen; Rutledge, Robert G; Sisti, Davide; Lievens, Antoon; De Preter, Katleen; Derveaux, Stefaan; Hellemans, Jan; Vandesompele, Jo

    2013-01-01

    RNA transcripts such as mRNA or microRNA are frequently used as biomarkers to determine disease state or response to therapy. Reverse transcription (RT) in combination with quantitative PCR (qPCR) has become the method of choice to quantify small amounts of such RNA molecules. In parallel with the democratization of RT-qPCR and its increasing use in biomedical research or biomarker discovery, we witnessed a growth in the number of gene expression data analysis methods. Most of these methods are based on the principle that the position of the amplification curve with respect to the cycle-axis is a measure for the initial target quantity: the later the curve, the lower the target quantity. However, most methods differ in the mathematical algorithms used to determine this position, as well as in the way the efficiency of the PCR reaction (the fold increase of product per cycle) is determined and applied in the calculations. Moreover, there is dispute about whether the PCR efficiency is constant or continuously decreasing. Together this has lead to the development of different methods to analyze amplification curves. In published comparisons of these methods, available algorithms were typically applied in a restricted or outdated way, which does not do them justice. Therefore, we aimed at development of a framework for robust and unbiased assessment of curve analysis performance whereby various publicly available curve analysis methods were thoroughly compared using a previously published large clinical data set (Vermeulen et al., 2009) [11]. The original developers of these methods applied their algorithms and are co-author on this study. We assessed the curve analysis methods' impact on transcriptional biomarker identification in terms of expression level, statistical significance, and patient-classification accuracy. The concentration series per gene, together with data sets from unpublished technical performance experiments, were analyzed in order to assess the

  4. Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications.

    PubMed

    Ruijter, Jan M; Pfaffl, Michael W; Zhao, Sheng; Spiess, Andrej N; Boggy, Gregory; Blom, Jochen; Rutledge, Robert G; Sisti, Davide; Lievens, Antoon; De Preter, Katleen; Derveaux, Stefaan; Hellemans, Jan; Vandesompele, Jo

    2013-01-01

    RNA transcripts such as mRNA or microRNA are frequently used as biomarkers to determine disease state or response to therapy. Reverse transcription (RT) in combination with quantitative PCR (qPCR) has become the method of choice to quantify small amounts of such RNA molecules. In parallel with the democratization of RT-qPCR and its increasing use in biomedical research or biomarker discovery, we witnessed a growth in the number of gene expression data analysis methods. Most of these methods are based on the principle that the position of the amplification curve with respect to the cycle-axis is a measure for the initial target quantity: the later the curve, the lower the target quantity. However, most methods differ in the mathematical algorithms used to determine this position, as well as in the way the efficiency of the PCR reaction (the fold increase of product per cycle) is determined and applied in the calculations. Moreover, there is dispute about whether the PCR efficiency is constant or continuously decreasing. Together this has lead to the development of different methods to analyze amplification curves. In published comparisons of these methods, available algorithms were typically applied in a restricted or outdated way, which does not do them justice. Therefore, we aimed at development of a framework for robust and unbiased assessment of curve analysis performance whereby various publicly available curve analysis methods were thoroughly compared using a previously published large clinical data set (Vermeulen et al., 2009) [11]. The original developers of these methods applied their algorithms and are co-author on this study. We assessed the curve analysis methods' impact on transcriptional biomarker identification in terms of expression level, statistical significance, and patient-classification accuracy. The concentration series per gene, together with data sets from unpublished technical performance experiments, were analyzed in order to assess the

  5. Cognitive Processes in Dissociation: Comment on Giesbrecht et al. (2008)

    ERIC Educational Resources Information Center

    Bremner, J. Douglas

    2010-01-01

    In their recent review "Cognitive Processes in Dissociation: An Analysis of Core Theoretical Assumptions," published in "Psychological Bulletin", Giesbrecht, Lynn, Lilienfeld, and Merckelbach (2008) have challenged the widely accepted trauma theory of dissociation, which holds that dissociative symptoms are caused by traumatic stress. In doing so,…

  6. High-throughput quantitative analysis with cell growth kinetic curves for low copy number mutant cells.

    PubMed

    Xing, James Z; Gabos, Stephan; Huang, Biao; Pan, Tianhong; Huang, Min; Chen, Jie

    2012-10-01

    The mutation rate in cells induced by environmental genotoxic hazards is very low and difficult to detect using traditional cell counting assays. The established genetic toxicity tests currently recognized by regulatory authorities, such as conventional Ames and hypoxanthine guanine phosphoribosyl-transferase (HPRT) assays, are not well suited for higher-throughput screening as they require large amounts of test compounds and are very time consuming. In this study, we developed a novel cell-based assay for quantitative analysis of low numbers of cell copies with HPRT mutation induced by an environmental mutagen. The HPRT gene mutant cells induced by the mutagen were selected by 6-thioguanine (6-TG) and the cell's kinetic growth curve monitored by a real-time cell electronic sensor (RT-CES) system. When a threshold is set at a certain cell index (CI) level, samples with different initial mutant cell copies take different amounts of time in order for their growth (or CI accumulation) to cross this threshold. The more cells that are initially seeded in the test well, the faster the cell accumulation and therefore the shorter the time required to cross this threshold. Therefore, the culture time period required to cross the threshold of each sample corresponds to the original number of cells in the sample. A mutant cell growth time threshold (MT) value of each sample can be calculated to predict the number of original mutant cells. For mutagenesis determination, the RT-CES assay displayed an equal sensitivity (p > 0.05) and coefficients of variation values with good correlation to conventional HPRT mutagenic assays. Most importantly, the RT-CES mutation assay has a higher throughput than conventional cellular assays.

  7. Magnetic unmixing of first-order reversal curve diagrams using principal component analysis

    NASA Astrophysics Data System (ADS)

    Lascu, Ioan; Harrison, Richard J.; Li, Yuting; Muraszko, Joy R.; Channell, James E. T.; Piotrowski, Alexander M.; Hodell, David A.

    2015-09-01

    We describe a quantitative magnetic unmixing method based on principal component analysis (PCA) of first-order reversal curve (FORC) diagrams. For PCA, we resample FORC distributions on grids that capture diagnostic signatures of single-domain (SD), pseudosingle-domain (PSD), and multidomain (MD) magnetite, as well as of minerals such as hematite. Individual FORC diagrams are recast as linear combinations of end-member (EM) FORC diagrams, located at user-defined positions in PCA space. The EM selection is guided by constraints derived from physical modeling and imposed by data scatter. We investigate temporal variations of two EMs in bulk North Atlantic sediment cores collected from the Rockall Trough and the Iberian Continental Margin. Sediments from each site contain a mixture of magnetosomes and granulometrically distinct detrital magnetite. We also quantify the spatial variation of three EM components (a coarse silt-sized MD component, a fine silt-sized PSD component, and a mixed clay-sized component containing both SD magnetite and hematite) in surficial sediments along the flow path of the North Atlantic Deep Water (NADW). These samples were separated into granulometric fractions, which helped constrain EM definition. PCA-based unmixing reveals systematic variations in EM relative abundance as a function of distance along NADW flow. Finally, we apply PCA to the combined data set of Rockall Trough and NADW sediments, which can be recast as a four-EM mixture, providing enhanced discrimination between components. Our method forms the foundation of a general solution to the problem of unmixing multicomponent magnetic mixtures, a fundamental task of rock magnetic studies.

  8. More basic approach to the analysis of multiple specimen R-curves for determination of J/sub c/

    SciTech Connect

    Carlson, K.W.; Williams, J.A.

    1980-02-01

    Multiple specimen J-R curves were developed for groups of 1T compact specimens with different a/W values and depth of side grooving. The purpose of this investigation was to determine J/sub c/ (J at onset of crack extension) for each group. Judicious selection of points on the load versus load-line deflection record at which to unload and heat tint specimens permitted direct observation of approximate onset of crack extension. It was found that the present recommended procedure for determining J/sub c/ from multiple specimen R-curves, which is being considered for standardization, consistently yielded nonconservative J/sub c/ values. A more basic approach to analyzing multiple specimen R-curves is presented, applied, and discussed. This analysis determined J/sub c/ values that closely corresponded to actual observed onset of crack extension.

  9. Combined statistical analysis of vasodilation and flow curves in brachial ultrasonography: technique and its connection to cardiovascular risk factors

    NASA Astrophysics Data System (ADS)

    Boisrobert, Loic; Laclaustra, Martin; Bossa, Matias; Frangi, Andres G.; Frangi, Alejandro F.

    2005-04-01

    Clinical studies report that impaired endothelial function is associated with Cardio-Vascular Diseases (CVD) and their risk factors. One commonly used mean for assessing endothelial function is Flow-Mediated Dilation (FMD). Classically, FMD is quantified using local indexes e.g. maximum peak dilation. Although such parameters have been successfully linked to CVD risk factors and other clinical variables, this description does not consider all the information contained in the complete vasodilation curve. Moreover, the relation between flow impulse and the vessel vasodilation response to this stimulus, although not clearly known, seems to be important and is not taken into account in the majority of studies. In this paper we propose a novel global parameterization for the vasodilation and the flow curves of a FMD test. This parameterization uses Principal Component Analysis (PCA) to describe independently and jointly the variability of flow and FMD curves. These curves are obtained using computerized techniques (based on edge detection and image registration, respectively) to analyze the ultrasound image sequences. The global description obtained through PCA yields a detailed characterization of the morphology of such curves allowing the extraction of intuitive quantitative information of the vasodilation process and its interplay with flow changes. This parameterization is consistent with traditional measurements and, in a database of 177 subjects, seems to correlate more strongly (and with more clinical parameters) than classical measures to CVD risk factors and clinical parameters such as LDL- and HDL-Cholesterol.

  10. Comparative Analysis of Biologically Relevant Response Curves in Gene Expression Experiments: Heteromorphy, Heterochrony, and Heterometry.

    PubMed

    Baker, Stuart G

    2014-01-01

    To gain biological insights, investigators sometimes compare sequences of gene expression measurements under two scenarios (such as two drugs or species). For this situation, we developed an algorithm to fit, identify, and compare biologically relevant response curves in terms of heteromorphy (different curves), heterochrony (different transition times), and heterometry (different magnitudes). The curves are flat, linear, sigmoid, hockey-stick (sigmoid missing a steady state), transient (sigmoid missing two steady states), impulse (with peak or trough), step (with intermediate-level plateau), impulse+ (impulse with an extra parameter), step+ (step with an extra parameter), further characterized by upward or downward trend. To reduce overfitting, we fit the curves to every other response, evaluated the fit in the remaining responses, and identified the most parsimonious curves that yielded a good fit. We measured goodness of fit using a statistic comparable over different genes, namely the square root of the mean squared prediction error as a percentage of the range of responses, which we call the relative prediction error (RPE). We illustrated the algorithm using data on gene expression at 14 times in the embryonic development in two species of frogs. Software written in Mathematica is freely available. PMID:27605029

  11. An analysis of calibration curve models for solid-state heat-flow calorimeters

    SciTech Connect

    Hypes, P. A.; Bracken, D. S.; McCabe, G.

    2001-01-01

    Various calibration curve models for solid-state calorimeters are compared to determine which model best fits the calibration data. The calibration data are discussed. The criteria used to select the best model are explained. A conclusion regarding the best model for the calibration curve is presented. These results can also be used to evaluate the random and systematic error of a calorimetric measurement. A linear/quadratic model has been used for decades to fit the calibration curves for wheatstone bridge calorimeters. Excellent results have been obtained using this calibration curve model. The Multical software package uses this model for the calibration curve. The choice of this model is supported by 40 years [1] of calorimeter data. There is good empirical support for the linear/quadratic model. Calorimeter response is strongly linear. Calorimeter sensitivity is slightly lower at higher powers; the negative coefficient of the x{sup 2} term accounts for this. The solid-state calorimeter is operated using the Multical [2] software package. An investigation was undertaken to determine if the linear/quadratic model is the best model for the new sensor technology used in the solid-state calorimeter.

  12. Comparative Analysis of Biologically Relevant Response Curves in Gene Expression Experiments: Heteromorphy, Heterochrony, and Heterometry

    PubMed Central

    Baker, Stuart G.

    2014-01-01

    To gain biological insights, investigators sometimes compare sequences of gene expression measurements under two scenarios (such as two drugs or species). For this situation, we developed an algorithm to fit, identify, and compare biologically relevant response curves in terms of heteromorphy (different curves), heterochrony (different transition times), and heterometry (different magnitudes). The curves are flat, linear, sigmoid, hockey-stick (sigmoid missing a steady state), transient (sigmoid missing two steady states), impulse (with peak or trough), step (with intermediate-level plateau), impulse+ (impulse with an extra parameter), step+ (step with an extra parameter), further characterized by upward or downward trend. To reduce overfitting, we fit the curves to every other response, evaluated the fit in the remaining responses, and identified the most parsimonious curves that yielded a good fit. We measured goodness of fit using a statistic comparable over different genes, namely the square root of the mean squared prediction error as a percentage of the range of responses, which we call the relative prediction error (RPE). We illustrated the algorithm using data on gene expression at 14 times in the embryonic development in two species of frogs. Software written in Mathematica is freely available.

  13. Kinetics of CH4 and CO2 hydrate dissociation and gas bubble evolution via MD simulation.

    PubMed

    Uddin, M; Coombe, D

    2014-03-20

    Molecular dynamics simulations of gas hydrate dissociation comparing the behavior of CH4 and CO2 hydrates are presented. These simulations were based on a structurally correct theoretical gas hydrate crystal, coexisting with water. The MD system was first initialized and stabilized via a thorough energy minimization, constant volume-temperature ensemble and constant volume-energy ensemble simulations before proceeding to constant pressure-temperature simulations for targeted dissociation pressure and temperature responses. Gas bubble evolution mechanisms are demonstrated as well as key investigative properties such as system volume, density, energy, mean square displacements of the guest molecules, radial distribution functions, H2O order parameter, and statistics of hydrogen bonds. These simulations have established the essential similarities between CH4 and CO2 hydrate dissociation. The limiting behaviors at lower temperature (no dissociation) and higher temperature (complete melting and formation of a gas bubble) have been illustrated for both hydrates. Due to the shift in the known hydrate stability curves between guest molecules caused by the choice of water model as noted by other authors, the intermediate behavior (e.g., 260 K) showed distinct differences however. Also, because of the more hydrogen-bonding capability of CO2 in water, as reflected in its molecular parameters, higher solubility of dissociated CO2 in water was observed with a consequence of a smaller size of gas bubble formation. Additionally, a novel method for analyzing hydrate dissociation based on H-bond breakage has been proposed and used to quantify the dissociation behaviors of both CH4 and CO2 hydrates. Activation energies Ea values from our MD studies were obtained and evaluated against several other published laboratory and MD values. Intrinsic rate constants were estimated and upscaled. A kinetic reaction model consistent with macroscale fitted kinetic models has been proposed to

  14. Childhood Traumatic Experiences, Dissociative Symptoms, and Dissociative Disorder Comorbidity Among Patients With Panic Disorder: A Preliminary Study.

    PubMed

    Ural, Cenk; Belli, Hasan; Akbudak, Mahir; Tabo, Abdulkadir

    2015-01-01

    This study assessed childhood trauma history, dissociative symptoms, and dissociative disorder comorbidity in patients with panic disorder (PD). A total of 92 psychotropic drug-naive patients with PD, recruited from outpatient clinics in the psychiatry department of a Turkish hospital, were involved in the study. Participants were assessed using the Structured Clinical Interview for DSM-IV Dissociative Disorders (SCID-D), Dissociation Questionnaire, Panic and Agoraphobia Scale, Panic Disorder Severity Scale, and Childhood Trauma Questionnaire. Of the patients with PD, 18 (19%) had a comorbid dissociative disorder diagnosis on screening with the SCID-D. The most prevalent disorders were dissociative disorder not otherwise specified, dissociative amnesia, and depersonalization disorders. Patients with a high degree of dissociation symptoms and dissociative disorder comorbidity had more severe PD than those without (p < .05). All of the childhood trauma subscales used were correlated with the severity of symptoms of dissociation and PD. Among all of the subscales, the strongest relationship was with childhood emotional abuse. Logistic regression analysis showed that emotional abuse and severity of PD were independently associated with dissociative disorder. In our study, a significant proportion of the patients with PD had concurrent diagnoses of dissociative disorder. We conclude that the predominance of PD symptoms at admission should not lead the clinician to overlook the underlying dissociative process and associated traumatic experiences among these patients.

  15. Applications of species accumulation curves in large-scale biological data analysis

    PubMed Central

    Deng, Chao; Daley, Timothy; Smith, Andrew D

    2016-01-01

    The species accumulation curve, or collector’s curve, of a population gives the expected number of observed species or distinct classes as a function of sampling effort. Species accumulation curves allow researchers to assess and compare diversity across populations or to evaluate the benefits of additional sampling. Traditional applications have focused on ecological populations but emerging large-scale applications, for example in DNA sequencing, are orders of magnitude larger and present new challenges. We developed a method to estimate accumulation curves for predicting the complexity of DNA sequencing libraries. This method uses rational function approximations to a classical non-parametric empirical Bayes estimator due to Good and Toulmin [Biometrika, 1956, 43, 45–63]. Here we demonstrate how the same approach can be highly effective in other large-scale applications involving biological data sets. These include estimating microbial species richness, immune repertoire size, and k-mer diversity for genome assembly applications. We show how the method can be modified to address populations containing an effectively infinite number of species where saturation cannot practically be attained. We also introduce a flexible suite of tools implemented as an R package that make these methods broadly accessible. PMID:27252899

  16. Parent Involvement and Science Achievement: A Cross-Classified Multilevel Latent Growth Curve Analysis

    ERIC Educational Resources Information Center

    Johnson, Ursula Y.; Hull, Darrell M.

    2014-01-01

    The authors examined science achievement growth at Grades 3, 5, and 8 and parent school involvement at the same time points using the Early Childhood Longitudinal Study-Kindergarten Class of 1998-1999. Data were analyzed using cross-classified multilevel latent growth curve modeling with time invariant and varying covariates. School-based…

  17. Development of Oral Reading Fluency in Children with Speech or Language Impairments: A Growth Curve Analysis

    ERIC Educational Resources Information Center

    Puranik, Cynthia S.; Petscher, Yaacov; Al Otaiba, Stephanie; Catts, Hugh W.; Lonigan, Christopher J.

    2008-01-01

    This longitudinal study used piece-wise growth curve analyses to examine growth patterns in oral reading fluency for 1,991 students with speech impairments (SI) or language impairments (LI) from first through third grade. The main finding of this study was that a diagnosis of SI or LI can have a detrimental and persistent effect on early reading…

  18. Three-dimensional FE analysis of a nailed soil wall curved in plan

    NASA Astrophysics Data System (ADS)

    Smith, I. M.; Su, N.

    1997-09-01

    A nailed soil wall curved in plan was modelled in three-dimensions by the finite element method for construction, service and ultimate loading conditions. The behaviour of the nailed soil wall, the soil-nail interaction, the role of the reinforcement, and the overall and internal failure mechanisms were investigated.

  19. The Second Order Approximation to Sample Influence Curve in Canonical Correlation Analysis.

    ERIC Educational Resources Information Center

    Fung, Wing K.; Gu, Hong

    1998-01-01

    A second order approximation to the sample influence curve (SIC) has been derived in the literature. This paper presents a more accurate second order approximation, which is exact for the SIC of the squared multiple correction coefficient. An example is presented. (SLD)

  20. Analysis of a Kepler Light Curve of the Novalike Cataclysmic Variable KIC 8751494

    NASA Astrophysics Data System (ADS)

    Kato, Taichi; Maehara, Hiroyuki

    2013-08-01

    We analyzed a Kepler light curve of KIC 8751494, a recently recognized novalike cataclysmic variable in the Kepler field. We detected a stable periodicity of 0.114379(1) d, which we identified as being the binary's orbital period. The stronger photometric period at around 0.12245 d, which had been detected from a ground-based observation, was found to be variable, and we identified this period as the positive-superhump period. This superhump period showed short-term (10-20 d) strong variations in period most unexpectedly when the object entered a slightly faint state. The fractional superhump excess varied by as much large as ˜ 30%. The variation of the period very well traced the variation of the brightness of the system. The time-scale of this variation of superhump periods was too slow to be interpreted as a variation caused by a change of the disk radius due to thermal disk instability. We interpreted the cause of the period variation as a varying pressure effect on the period of positive superhumps. This finding suggests that the pressure effect, in at least novalike systems, plays a very important (up to ˜ 30% in the precession rate) role in producing the period of positive superhumps. We also described a possible detection of negative superhumps with a varying period of 0.1071-0.1081 d in the Q14 run of the Kepler data, and found that the variation of frequency of negative superhumps followed that of positive superhumps. The relation between the fractional superhump excesses of negative and positive superhumps can be understood if the angular frequency of positive superhumps is decreased by a pressure effect. We also found that the phase of the variation in the velocity of the emission lines reported in the earlier study is compatible with the SW Sex-type classification. Further, we introduced a new two-dimentional period analysis using least absolute shrinkage and selection operator (Lasso), and showed superior advantages of this method.

  1. A breakthrough curve analysis of unstable density-driven flow and transport in homogeneous porous media

    NASA Astrophysics Data System (ADS)

    Wood, M.; Simmons, C. T.; Hutson, J. L.

    2004-03-01

    In certain hydrogeological situations, density variations occur because of changes in solute concentration, temperature, and pressure of the fluid. These include seawater intrusion, high-level radioactive waste disposal, groundwater contamination, and geothermal energy production. Under certain conditions, when the density of the invading fluid is greater than that of the ambient one, gravitational instabilities or fingers may lead to transport over larger spatial scales and significantly shorter timescales than compared with diffusion alone. This study has two key objectives: (1) to explore how the nature of a breakthrough curve changes as the density of the invading fluid changes and there is a subsequent transition from stable to unstable behavior and (2) to examine the feasibility of using 1-D advection-dispersion fitting models to fit the experimental data as the density of the invading fluid increases. Thirty-six breakthrough curve experiments were carried out in fully saturated, homogeneous sand columns. Results show that an increase in the density of the source solutions leads to breakthrough curves with lower peak concentrations at breakthrough, earlier peak breakthrough pore volume and time, and an increase in positive skewness of the breakthrough curve. Visual experiments conducted in transparent columns confirm that a transition from stable to unstable behavior occurs as the density of the injectant increases and that backward convective reflux in the high-density cases leads to dilution of the trailing edge of the pulse as evidenced by positively skewed breakthrough curves. These mixed convective systems (controlled by both forced and free convection) are characterized by a mixed convective ratio. Parameter estimation using a 1-D advection-dispersion fitting model suggests that unstable plume migration can be fitted with an apparent pore flow velocity and dispersivity at low-density gradients. However, as the density of the injectant increases, it

  2. Analysis of hyperspherical adiabatic curves of helium: A classical dynamics study

    NASA Astrophysics Data System (ADS)

    Simonović, N. S.; Solov'ev, E. A.

    2013-05-01

    The hyperspherical adiabatic curves (adiabatic eigenenergies as functions of the hyperradius R) of helium for zero total angular momentum are analyzed by studying the underlying classical dynamics which in the adiabatic treatment reduces to constrained two-electron motion on a hypersphere. This dynamics supports five characteristic classical configurations which can be represented by five types of short periodic orbits: the frozen planet (FP), the inverted frozen planet (IFP), the asymmetric stretch (AS), the asynchronous (ASC), and the Langmuir periodic orbit (PO). These POs are considered as fundamental modes of the two-electron motion on a hypersphere which, after quantization, give five families of so-called adiabatic lines (adiabatic energies related to these POs as functions of R). It is found that multiplets, each of them consisting of adiabatic curves which converge to the same ionization threshold, are at large values of R delimited from the bottom and from the top by the adiabatic lines which are related to the IFP and stable AS POs and to the FP PO, respectively. At smaller values of R, where the AS PO becomes unstable, the curves move to the area between the ASC (bottom) and AS (top) lines by crossing the latter. Therefore, at different values of R the lower limiting line of the multiplet is related to the three types of PO (IFP, AS, and ASC), which are all stable in the negative-energy part of this line. As a consequence, the quantum states of helium in principle are not related individually to a single classical configuration on the hypersphere. In addition, it is demonstrated that “unstable parts” of adiabatic lines (the so-called diabatic curves) determine the positions and type of avoided and hidden crossings between hyperspherical adiabatic curves. Two clearly visible classes of avoided crossings are related to the AS and ASC POs. In addition, a number of avoided crossings of the adiabatic curves is observed at the positions where the

  3. Observation and analysis of the hyperfine structure of near-dissociation levels of the NaCs c +3Σ state below the dissociation limit 3 S1 /2+6 P3 /2

    NASA Astrophysics Data System (ADS)

    Liu, Wenliang; Wu, Jizhou; Ma, Jie; Li, Peng; Sovkov, Vladimir B.; Xiao, Liantuan; Jia, Suotang

    2016-09-01

    We report photoassociation (PA) of ultracold Na and Cs atoms in a dual-species magneto-optical trap. Trap loss spectroscopy of the ultracold polar NaCs molecules formed by PA, which carries information about relative PA transition strengths, has been experimentally obtained by using highly sensitive modulation spectroscopy technique. The fine and hyperfine effects at near-dissociation levels of NaCs molecular c +3Σ state are observed and modeled. The interaction Hamiltonian is described in terms of the Hund's case (a ) coupling scheme. The molecular hyperfine structure of near-dissociation levels is simulated within a simplified model of four interacting vibrational levels belonging to different initially unperturbed electronic states. The results of the simulation infer that the interaction parameters of the observed near-dissociation levels are close to the asymptotic parameters of the pair of atoms. The coupling of the electronic states is essential for forming the hyperfine structure.

  4. Noise transmission from a curved panel into a cylindrical enclosure: analysis of structural acoustic coupling.

    PubMed

    Henry, J K; Clark, R L

    2001-04-01

    Much of the research on sound transmission through the aircraft fuselage into the interior of aircraft has considered coupling of the entire cylinder to the acoustic modes of the enclosure. Yet, much of the work on structural acoustic control of sound radiation has focused on reducing sound radiation from individual panels into an acoustic space. Research by the authors seeks to bridge this gap by considering the transmission of sound from individual panels on the fuselage to the interior of the aircraft. As part of this research, an analytical model of a curved panel, with attached piezoelectric actuators, subjected to a static pressure load was previously developed. In the present work, the analytical model is extended to consider the coupling of a curved panel to the interior acoustics of a rigid-walled cylinder. Insight gained from an accurate analytical model of the dynamics of the noise transmission from the curved panels of the fuselage into the cylindrical enclosure of an aircraft is essential to the development of feedback control systems for the control of stochastic inputs, such as turbulent boundary layer excitation. The criteria for maximal structural acoustic coupling between the modes of the curved panel and the modes of the cylindrical enclosure are studied. For panels with aspect ratios typical of those found in aircraft, results indicate that predominately axial structural modes couple most efficiently to the acoustic modes of the enclosure. The effects of the position of the curved panel on the cylinder are also studied. Structural acoustic coupling is found to not be significantly affected by varying panel position. The impact of the findings of this study on structural acoustic control design is discussed. PMID:11325117

  5. A LIGHT CURVE ANALYSIS OF CLASSICAL NOVAE: FREE-FREE EMISSION VERSUS PHOTOSPHERIC EMISSION

    SciTech Connect

    Hachisu, Izumi; Kato, Mariko E-mail: mariko@educ.cc.keio.ac.jp

    2015-01-10

    We analyzed light curves of seven relatively slower novae, PW Vul, V705 Cas, GQ Mus, RR Pic, V5558 Sgr, HR Del, and V723 Cas, based on an optically thick wind theory of nova outbursts. For fast novae, free-free emission dominates the spectrum in optical bands rather than photospheric emission, and nova optical light curves follow the universal decline law. Faster novae blow stronger winds with larger mass-loss rates. Because the brightness of free-free emission depends directly on the wind mass-loss rate, faster novae show brighter optical maxima. In slower novae, however, we must take into account photospheric emission because of their lower wind mass-loss rates. We calculated three model light curves of free-free emission, photospheric emission, and their sum for various white dwarf (WD) masses with various chemical compositions of their envelopes and fitted reasonably with observational data of optical, near-IR (NIR), and UV bands. From light curve fittings of the seven novae, we estimated their absolute magnitudes, distances, and WD masses. In PW Vul and V705 Cas, free-free emission still dominates the spectrum in the optical and NIR bands. In the very slow novae, RR Pic, V5558 Sgr, HR Del, and V723 Cas, photospheric emission dominates the spectrum rather than free-free emission, which makes a deviation from the universal decline law. We have confirmed that the absolute brightnesses of our model light curves are consistent with the distance moduli of four classical novae with known distances (GK Per, V603 Aql, RR Pic, and DQ Her). We also discussed the reason why the very slow novae are about ∼1 mag brighter than the proposed maximum magnitude versus rate of decline relation.

  6. Enrichment and Analysis of Nonenzymatically Glycated Peptides: Boronate Affinity Chromatography Coupled with Electron-Transfer Dissociation Mass Spectrometry

    SciTech Connect

    Zhang, Qibin; Tang, Ning; Brock, Jonathan W.; Mottaz, Heather M.; Ames, Jennifer M.; Baynes, John; Smith, Richard D.; Metz, Thomas O.

    2007-06-01

    Non-enzymatic glycation of peptides and proteins by D-glucose has important implications in the pathogenesis of diabetes mellitus, particularly in the development of diabetic complications. However, no effective high-throughput methods exist for identifying proteins containing this low abundance post-translational modification in bottom-up proteomic studies. In this report, phenylboronate affinity chromatography was used in a two-step enrichment scheme to selectively isolate first glycated proteins and then glycated, tryptic peptides from human serum glycated in vitro. Enriched peptides were subsequently analyzed by alternating electron transfer dissociation (ETD) and collision induced dissociation (CID) tandem mass spectrometry. It was observed that ETD fragmentation mode resulted in a significantly higher number of glycated peptide identifications (87.6% of all identified peptides) versus CID mode (17.0% of all identified peptides), when utilizing dual glycation enrichment on both the protein and peptide level. This study illustrates that phenylboronate affinity chromatography coupled with LC-MS/MS with ETD as the fragmentation mode is an efficient approach for analyses of glycated proteins and can have broad applications in studies of diabetes mellitus.

  7. Quantitative 3-D colocalization analysis as a tool to study the intracellular trafficking and dissociation of pDNA-chitosan polyplexes

    NASA Astrophysics Data System (ADS)

    Reitan, Nina Kristine; Sporsheim, Bjørnar; Bjørkøy, Astrid; Strand, Sabina; Davies, Catharina de Lange

    2012-02-01

    Multichannel microscopy is frequently used to study intermolecular interactions and spatial relationships between biomolecules and organelles or vesicles in cells. Based on multichannel images, quantitative colocalization analysis can provide valuable information about cellular internalization, vesicular transport, and the intracellular kinetics and location of biomolecules. However, such analyses should be performed carefully, because quantitative colocalization parameters have different interpretations and can be highly affected by image quality. We use quantitative three-dimensional colocalization analysis of deconvolved and chromatic-registered confocal images to study the dissociation of double-labeled pDNA-chitosan polyplexes in HeLa cells and their colocalization with early endosomes. Two chitosans that form polyplexes with highly different transfection efficacies are compared. Pearson's correlation coefficient, Manders' colocalization coefficients, and the intensity correlation quotient are estimated to determine the intracellular localization of polyplexes, free pDNA, and free chitosans. Differences are observed in the amount of uptake, and in the intracellular pathways and rates of dissociation for the two chitosans. The results support previous findings that polyplexes formed by self-branched, glycosylated chitosan oligomers are more favorable for cellular uptake and intracellular trafficking to the nucleus compared with polyplexes formed by linear chitosans.

  8. Highlights and pitfalls of 20 years of application of computerised glow curve analysis to thermoluminescence research and dosimetry.

    PubMed

    Horowitz, Y S; Moscovitch, M

    2013-01-01

    The technical and dosimetric aspects of computerised glow curve analysis are described in detail including a review of the current 'state-of-the-achieved' in applications to environmental and personal dosimetry, clinical dosimetry, quality control, characterisation of new materials, continuing characterisation of 'old' materials, heavy charged particle dosimetry, mixed field n-gamma dosimetry, X-ray dosimetry and other aspects of thermoluminescence dosimetry. Fearless emphasis is placed on 'pitfalls' as well as successes.

  9. The dissociative bond.

    PubMed

    Gordon, Nirit

    2013-01-01

    Dissociation leaves a psychic void and a lingering sense of psychic absence. How do 2 people bond while they are both suffering from dissociation? The author explores the notion of a dissociative bond that occurs in the aftermath of trauma--a bond that holds at its core an understanding and shared detachment from the self. Such a bond is confined to unspoken terms that are established in the relational unconscious. The author proposes understanding the dissociative bond as a transitional space that may not lead to full integration of dissociated knowledge yet offers some healing. This is exemplified by R. Prince's (2009) clinical case study. A relational perspective is adopted, focusing on the intersubjective aspects of a dyadic relationship. In the dissociative bond, recognition of the need to experience mutual dissociation can accommodate a psychic state that yearns for relationship when the psyche cannot fully confront past wounds. Such a bond speaks to the need to reestablish a sense of human relatedness and connection when both parties in the relationship suffer from disconnection. This bond is bound to a silence that becomes both a means of protection against the horror of traumatic memory and a way to convey unspoken gestures toward the other.

  10. The dissociative bond.

    PubMed

    Gordon, Nirit

    2013-01-01

    Dissociation leaves a psychic void and a lingering sense of psychic absence. How do 2 people bond while they are both suffering from dissociation? The author explores the notion of a dissociative bond that occurs in the aftermath of trauma--a bond that holds at its core an understanding and shared detachment from the self. Such a bond is confined to unspoken terms that are established in the relational unconscious. The author proposes understanding the dissociative bond as a transitional space that may not lead to full integration of dissociated knowledge yet offers some healing. This is exemplified by R. Prince's (2009) clinical case study. A relational perspective is adopted, focusing on the intersubjective aspects of a dyadic relationship. In the dissociative bond, recognition of the need to experience mutual dissociation can accommodate a psychic state that yearns for relationship when the psyche cannot fully confront past wounds. Such a bond speaks to the need to reestablish a sense of human relatedness and connection when both parties in the relationship suffer from disconnection. This bond is bound to a silence that becomes both a means of protection against the horror of traumatic memory and a way to convey unspoken gestures toward the other. PMID:23282044

  11. Dissociative symptoms and REM sleep.

    PubMed

    van Heugten-van der Kloet, Dalena; Merckelbach, Harald; Lynn, Steven Jay

    2013-12-01

    Llewellyn has written a fascinating article about rapid eye movement (REM) dreams and how they promote the elaborative encoding of recent memories. The main message of her article is that hyperassociative and fluid cognitive processes during REM dreaming facilitate consolidation. We consider one potential implication of this analysis: the possibility that excessive or out-of-phase REM sleep fuels dissociative symptomatology. Further research is warranted to explore the psychopathological ramifications of Llewellyn's theory. PMID:24304772

  12. Receiver operator characteristic (ROC) curve analysis of super high resolution video for histopathology

    NASA Astrophysics Data System (ADS)

    Bloom, Kenneth J.; Rozek, L. S.; Weinstein, Ronald S.

    1987-10-01

    The receiver operator characteristic (ROC) curve is used to assess the ability of a diagnostic test to distinguish between two discreet states, such as tumor present or tumor absent in a histopathologic section. We have used ROC methodology to assess the ability of pathologists to diagnose frozen section biopsies of breast tissue as benign or malignant, using both a conventional light microscope and a high resolution camera/monitor system. 115 consecutive frozen section breast biopsies were reviewed using each of the above modalities. Results yielded identical ROC curves for the conventional light microscope and high resolution camera/monitor system. Furthermore, the percentage of cases in which pathologists rendered an "equivocal" diagnosis was the same with both modalities.

  13. Eigen analysis of tree-ring records: Part 1, a limited representativeness of regional curve

    NASA Astrophysics Data System (ADS)

    Yang, Bao; Sonechkin, Dmitry M.; Datsenko, Nina M.; Ivashchenko, Nadezda N.; Liu, Jingjing; Qin, Chun

    2011-12-01

    Based on a set of very long-living (2,000 years) Qilian junipers ( Sabina przewalskii Kom.) from the north-eastern part of the Tibetan Plateau (the region of Dulan), we carefully consider the regional curve standardization (RCS) technique. For this goal, we correlate deviations of individual tree-ring width records from their regional mean age-dependent curve (RC). It turns out that these correlations keep their positivity for almost all shifts between ages compared (up to 500 years and even more) evidencing each Dulan juniper to be a unique "thermometer". Just the unification of these "thermometers" in the form RC creates a spurious positive trend in the Dulan chronology. We modify the RCS technique to closer attach RC to these "thermometers" in order to construct a new chronology in which the trend is absent.

  14. Fracture toughness master-curve analysis of the tempered martensitic steel Eurofer97

    NASA Astrophysics Data System (ADS)

    Mueller, Pablo; Spätig, P.; Bonadé, R.; Odette, G. R.; Gragg, D.

    2009-04-01

    We report fracture toughness data for the reduced activation tempered martensitic steel Eurofer97 in the lower to middle transition region. The fracture toughness was measured from tests carried out on 0.35 T and 0.87 T pre-cracked compact tension specimens. The data were first analyzed using the ASTM E1921 standard. The toughness-temperature behavior and scatter were shown to deviate from the ASTM E1921 standard predictions near the lower shelf. Using the method of maximum likelihood, the athermal component of the master-curve was calculated to better fit the data from the lower to the middle transition region. We showed that these master-curve adjustments are necessary to make the To values obtained near the lower shelf with 0.35 TC( T) specimens consistent with those obtained in the middle transition region with 0.87 TC( T) specimens.

  15. Fitting sediment rating curves using regression analysis: a case study of Russian Arctic rivers

    NASA Astrophysics Data System (ADS)

    Tananaev, N. I.

    2015-03-01

    Published suspended sediment data for Arctic rivers is scarce. Suspended sediment rating curves for three medium to large rivers of the Russian Arctic were obtained using various curve-fitting techniques. Due to the biased sampling strategy, the raw datasets do not exhibit log-normal distribution, which restricts the applicability of a log-transformed linear fit. Non-linear (power) model coefficients were estimated using the Levenberg-Marquardt, Nelder-Mead and Hooke-Jeeves algorithms, all of which generally showed close agreement. A non-linear power model employing the Levenberg-Marquardt parameter evaluation algorithm was identified as an optimal statistical solution of the problem. Long-term annual suspended sediment loads estimated using the non-linear power model are, in general, consistent with previously published results.

  16. Effects of experimental design on calibration curve precision in routine analysis.

    PubMed

    Pimentel, M F; Neto, B de B; Saldanha, T C; Araújo, M C

    1998-01-01

    A computational program which compares the effciencies of different experimental designs with those of maximum precision (D-optimized designs) is described. The program produces confidence interval plots for a calibration curve and provides information about the number of standard solutions, concentration levels and suitable concentration ranges to achieve an optimum calibration. Some examples of the application of this novel computational program are given, using both simulated and real data.

  17. Analysis of spatial variability of extreme rainfall at radar subpixel scale using IDF curves

    NASA Astrophysics Data System (ADS)

    Peleg, Nadav; Marra, Francesco; Fatichi, Simone; Paschalis, Athanasios; Molnar, Peter; Burlando, Paolo

    2016-04-01

    Extreme rainfall is quantified in engineering practice using Intensity-Duration-Frequency curves (IDFs) that are traditionally derived from rain-gauges and, more recently, also from weather radars. These instruments measure rainfall at different spatial scales: rain-gauge samples rainfall at the point scale while weather radar averages precipitation over a relatively large area, generally around 1 km2. As such, a radar derived IDF curve is representative of the mean areal rainfall over a given radar pixel and neglects the within-pixel rainfall variability. In this study, we quantify subpixel variability of extreme rainfall by using a novel space-time rainfall generator (STREAP model) that downscales in space the rainfall within a given radar pixel. The study was conducted using a long radar data record (23 years) and a very dense rain-gauge network in the Eastern Mediterranean area. Radar-IDF curves, together with an ensemble of point-based IDF curves representing the radar subpixel extreme rainfall variability, were developed fitting GEV distributions to annual rainfall maxima. It was found that the mean areal extreme rainfall derived from the radar underestimate most of the extreme values computed for point locations within the radar pixel. The subpixel variability of extreme rainfall was found to increase with longer return periods and shorter durations. For the longer return periods, a considerable enhancement of extreme rainfall variability was found when stochastic (natural) climate variability was taken into account. Bounding the range of the subpixel extreme rainfall derived from radar-IDF can be of major importance for applications that require very local estimates of rainfall extremes.

  18. Structural analysis of ruthenium-arene complexes using ion mobility mass spectrometry, collision-induced dissociation, and DFT.

    PubMed

    Czerwinska, Izabella; Far, Johann; Kune, Christopher; Larriba-Andaluz, Carlos; Delaude, Lionel; De Pauw, Edwin

    2016-04-21

    Ion mobility mass spectrometry (IM-MS) and collision-induced dissociation (CID) techniques were used to investigate the influence of the phosphine ligand on the physicochemical properties of [RuCl2(p-cymene)(PCy3)] (), [RuCl2(p-cymene)(PPh3)] (), and [RuCl2(p-cymene)(PTA)] () in the gas phase (PTA is 1,3,5-triaza-7-phosphaadamantane). Electrospray ionization of complexes and led to the corresponding [RuCl(p-cymene)(PR3)](+) ions via the dissociation of a chlorido ligand, whereas RAPTA-C () afforded two molecular ions by in-source oxidation ([Ru(III)Cl2(p-cymene)(PTA)](+)) or protonation ([RuCl2(p-cymene)(PTA+H)](+)). Control experiments showed that the balance between these two ionization paths was strongly influenced by the nature of the solvent used for infusion. Collision cross sections (CCSs) of the four molecular ions accurately reflected the variations of steric bulk inferred from the Tolman steric parameters (θ) of the phosphine ligands. Moreover, DFT calculations combined with a model based on the kinetic theory of gases (the trajectory method of the IMoS software) afforded reliable CCS predictions. The almost two times higher dipole moment of [RuCl2(p-cymene)(PTA+H)](+) (μ = 13.75 D) compared to [Ru(III)Cl2(p-cymene)(PTA)](+) (μ = 7.18 D) was held responsible for increased ion-induced dipole interactions with a polarizable drift gas such as N2. Further experiments with He and CO2 confirmed that increasing the polarizability of the buffer gas improved the separation between the two molecular ions derived from complex . The fragmentation patterns of complexes were determined by CID. The sequence of collision voltages at which 50% of a precursor ion dissociates (V50) recorded for the molecular ions derived from compounds was in good agreement with simple electronic considerations based on the donor strength of the phosphine ligand. Thus, the CCS and V50 parameters used to determine the shape and stability of ionic species in the gas phase are complementary

  19. Structural analysis of ruthenium-arene complexes using ion mobility mass spectrometry, collision-induced dissociation, and DFT.

    PubMed

    Czerwinska, Izabella; Far, Johann; Kune, Christopher; Larriba-Andaluz, Carlos; Delaude, Lionel; De Pauw, Edwin

    2016-04-21

    Ion mobility mass spectrometry (IM-MS) and collision-induced dissociation (CID) techniques were used to investigate the influence of the phosphine ligand on the physicochemical properties of [RuCl2(p-cymene)(PCy3)] (), [RuCl2(p-cymene)(PPh3)] (), and [RuCl2(p-cymene)(PTA)] () in the gas phase (PTA is 1,3,5-triaza-7-phosphaadamantane). Electrospray ionization of complexes and led to the corresponding [RuCl(p-cymene)(PR3)](+) ions via the dissociation of a chlorido ligand, whereas RAPTA-C () afforded two molecular ions by in-source oxidation ([Ru(III)Cl2(p-cymene)(PTA)](+)) or protonation ([RuCl2(p-cymene)(PTA+H)](+)). Control experiments showed that the balance between these two ionization paths was strongly influenced by the nature of the solvent used for infusion. Collision cross sections (CCSs) of the four molecular ions accurately reflected the variations of steric bulk inferred from the Tolman steric parameters (θ) of the phosphine ligands. Moreover, DFT calculations combined with a model based on the kinetic theory of gases (the trajectory method of the IMoS software) afforded reliable CCS predictions. The almost two times higher dipole moment of [RuCl2(p-cymene)(PTA+H)](+) (μ = 13.75 D) compared to [Ru(III)Cl2(p-cymene)(PTA)](+) (μ = 7.18 D) was held responsible for increased ion-induced dipole interactions with a polarizable drift gas such as N2. Further experiments with He and CO2 confirmed that increasing the polarizability of the buffer gas improved the separation between the two molecular ions derived from complex . The fragmentation patterns of complexes were determined by CID. The sequence of collision voltages at which 50% of a precursor ion dissociates (V50) recorded for the molecular ions derived from compounds was in good agreement with simple electronic considerations based on the donor strength of the phosphine ligand. Thus, the CCS and V50 parameters used to determine the shape and stability of ionic species in the gas phase are complementary

  20. Statistically generated weighted curve fit of residual functions for modal analysis of structures

    NASA Technical Reports Server (NTRS)

    Bookout, P. S.

    1995-01-01

    A statistically generated weighting function for a second-order polynomial curve fit of residual functions has been developed. The residual flexibility test method, from which a residual function is generated, is a procedure for modal testing large structures in an external constraint-free environment to measure the effects of higher order modes and interface stiffness. This test method is applicable to structures with distinct degree-of-freedom interfaces to other system components. A theoretical residual function in the displacement/force domain has the characteristics of a relatively flat line in the lower frequencies and a slight upward curvature in the higher frequency range. In the test residual function, the above-mentioned characteristics can be seen in the data, but due to the present limitations in the modal parameter evaluation (natural frequencies and mode shapes) of test data, the residual function has regions of ragged data. A second order polynomial curve fit is required to obtain the residual flexibility term. A weighting function of the data is generated by examining the variances between neighboring data points. From a weighted second-order polynomial curve fit, an accurate residual flexibility value can be obtained. The residual flexibility value and free-free modes from testing are used to improve a mathematical model of the structure. The residual flexibility modal test method is applied to a straight beam with a trunnion appendage and a space shuttle payload pallet simulator.

  1. CONFIRMATION OF HOT JUPITER KEPLER-41b VIA PHASE CURVE ANALYSIS

    SciTech Connect

    Quintana, Elisa V.; Rowe, Jason F.; Caldwell, Douglas A.; Christiansen, Jessie L.; Jenkins, Jon M.; Morris, Robert L.; Smith, Jeffrey C.; Thompson, Susan E.; Barclay, Thomas; Ciardi, David R.; Klaus, Todd C.

    2013-04-20

    We present high precision photometry of Kepler-41, a giant planet in a 1.86 day orbit around a G6V star that was recently confirmed through radial velocity measurements. We have developed a new method to confirm giant planets solely from the photometric light curve, and we apply this method herein to Kepler-41 to establish the validity of this technique. We generate a full phase photometric model by including the primary and secondary transits, ellipsoidal variations, Doppler beaming, and reflected/emitted light from the planet. Third light contamination scenarios that can mimic a planetary transit signal are simulated by injecting a full range of dilution values into the model, and we re-fit each diluted light curve model to the light curve. The resulting constraints on the maximum occultation depth and stellar density combined with stellar evolution models rules out stellar blends and provides a measurement of the planet's mass, size, and temperature. We expect about two dozen Kepler giant planets can be confirmed via this method.

  2. Advances in the interpretation and analysis of lunar occultation light curves

    NASA Astrophysics Data System (ADS)

    Richichi, A.; Glindemann, A.

    2012-02-01

    Context. The introduction of fast 2D detectors and the use of very large telescopes have significantly advanced the sensitivity and accuracy of the lunar occultation technique. Recent routine observations at the ESO Very Large Telescope have yielded hundreds of events with results, especially in the area of binary stars, which are often beyond the capabilities of any other techniques. Aims: With the increase in the quality and in the number of the events, subtle features in the light curve patterns have occasionally been detected which challenge the standard analytical definition of the lunar occultation phenomenon as diffraction from an infinite straight edge. We investigate the possible causes for the observed peculiarities. Methods: We have evaluated the available statistics of distortions in occultation light curves observed at the ESO VLT, and compared it to data from other facilities. We have developed an alternative approach to model and interpret lunar occultation light curves, based on 2D diffraction integrals describing the light curves in the presence of an arbitrary lunar limb profile. We distinguish between large limb irregularities requiring the Fresnel diffraction formalism, and small irregularities described by Fraunhofer diffraction. We have used this to generate light curves representative of several limb geometries, and attempted to relate them to some of the peculiar data observed. Results: We conclude that the majority of the observed peculiarities is due to limb irregularities, which can give origin both to anomalies in the amplitude of the diffraction fringes and to varying limb slopes. We investigate also other possible effects, such as detector response and atmospheric perturbations, finding them negligible. We have developed methods and procedures that for the first time allow us to analyze data affected by limb irregularities, with large ones bending the fringe pattern along the shape of the irregularity, and small ones creating fringe

  3. AN ANALYSIS OF THE SHAPES OF INTERSTELLAR EXTINCTION CURVES. VI. THE NEAR-IR EXTINCTION LAW

    SciTech Connect

    Fitzpatrick, E. L.; Massa, D. E-mail: massa@derckmassa.net

    2009-07-10

    We combine new observations from the Hubble Space Telescope's Advanced Camera of Survey with existing data to investigate the wavelength dependence of near-IR (NIR) extinction. Previous studies suggest a power law form for NIR extinction, with a 'universal' value of the exponent, although some recent observations indicate that significant sight line-to-sight line variability may exist. We show that a power-law model for the NIR extinction provides an excellent fit to most extinction curves, but that the value of the power, {beta}, varies significantly from sight line to sight line. Therefore, it seems that a 'universal NIR extinction law' is not possible. Instead, we find that as {beta} decreases, R(V) {identical_to} A(V)/E(B - V) tends to increase, suggesting that NIR extinction curves which have been considered 'peculiar' may, in fact, be typical for different R(V) values. We show that the power-law parameters can depend on the wavelength interval used to derive them, with the {beta} increasing as longer wavelengths are included. This result implies that extrapolating power-law fits to determine R(V) is unreliable. To avoid this problem, we adopt a different functional form for NIR extinction. This new form mimics a power law whose exponent increases with wavelength, has only two free parameters, can fit all of our curves over a longer wavelength baseline and to higher precision, and produces R(V) values which are consistent with independent estimates and commonly used methods for estimating R(V). Furthermore, unlike the power-law model, it gives R(V)s that are independent of the wavelength interval used to derive them. It also suggests that the relation R(V) = -1.36 E(K-V)/(E(B-V)) - 0.79 can estimate R(V) to {+-}0.12. Finally, we use model extinction curves to show that our extinction curves are in accord with theoretical expectations, and demonstrate how large samples of observational quantities can provide useful constraints on the grain properties.

  4. Photometric analysis of the contact binary star V842 Hercules on the basis of seasonal light curves

    NASA Astrophysics Data System (ADS)

    Erdem, A.; Özkardeş, B.

    2009-04-01

    We present new BVR light curves and photometric analysis of the contact binary star V842 Her. The light curves were obtained at the ÇOMU Observatory in the consecutive years 2003, 2004, 2005, and also 2007. We studied the variation of the orbital period of the system. The O- C diagram shows a quasi-sinusoidal form superimposed on a parabola. The parabolic variation, which indicates the secular increase of the orbital period of the system, was interpreted in terms of the combined effect of mass transfer between the components of the system and mass loss by a stellar wind from the system. The sinusoidal form of the orbital period variation was considered as an apparent change and interpreted in term of the light-time effect due to an unseen component in the system. We have also studied the nature of asymmetries and the intrinsic variability in the light curves of the system. The differences between light levels of both maxima (i.e. O'Connell effect) and minima are changing with time. These peculiar asymmetries were explained by a dark spot on the surface of the large and more massive component star. The present BVR light curves and radial velocity curves obtained by [Rucinski, S.M., Lu, W., 1999. AJ 118, 2451] were analysed by means of the Wilson-Devinney method supplemented with a Monte Carlo type algorithm. Absolute parameters of the system were also derived. They are m1 = 0.38 m⊙, m2 = 1.45 m⊙, R1 = 0.81 R⊙, R2 = 1.47 R⊙, M = 5m.08 and M = 4m.06.

  5. A comparison of conscious and automatic memory processes for picture and word stimuli: a process dissociation analysis.

    PubMed

    McBride, Dawn M; Anne Dosher, Barbara

    2002-09-01

    Four experiments were conducted to evaluate explanations of picture superiority effects previously found for several tasks. In a process dissociation procedure (Jacoby, 1991) with word stem completion, picture fragment completion, and category production tasks, conscious and automatic memory processes were compared for studied pictures and words with an independent retrieval model and a generate-source model. The predictions of a transfer appropriate processing account of picture superiority were tested and validated in "process pure" latent measures of conscious and unconscious, or automatic and source, memory processes. Results from both model fits verified that pictures had a conceptual (conscious/source) processing advantage over words for all tasks. The effects of perceptual (automatic/word generation) compatibility depended on task type, with pictorial tasks favoring pictures and linguistic tasks favoring words. Results show support for an explanation of the picture superiority effect that involves an interaction of encoding and retrieval processes. PMID:12435377

  6. Accounting for the dissociating properties of organic chemicals in LCIA: an uncertainty analysis applied to micropollutants in the assessment of freshwater ecotoxicity.

    PubMed

    Morais, Sérgio Alberto; Delerue-Matos, Cristina; Gabarrell, Xavier

    2013-03-15

    In life cycle impact assessment (LCIA) models, the sorption of the ionic fraction of dissociating organic chemicals is not adequately modeled because conventional non-polar partitioning models are applied. Therefore, high uncertainties are expected when modeling the mobility, as well as the bioavailability for uptake by exposed biota and degradation, of dissociating organic chemicals. Alternative regressions that account for the ionized fraction of a molecule to estimate fate parameters were applied to the USEtox model. The most sensitive model parameters in the estimation of ecotoxicological characterization factors (CFs) of micropollutants were evaluated by Monte Carlo analysis in both the default USEtox model and the alternative approach. Negligible differences of CFs values and 95% confidence limits between the two approaches were estimated for direct emissions to the freshwater compartment; however the default USEtox model overestimates CFs and the 95% confidence limits of basic compounds up to three orders and four orders of magnitude, respectively, relatively to the alternative approach for emissions to the agricultural soil compartment. For three emission scenarios, LCIA results show that the default USEtox model overestimates freshwater ecotoxicity impacts for the emission scenarios to agricultural soil by one order of magnitude, and larger confidence limits were estimated, relatively to the alternative approach. PMID:23434828

  7. Potential Energy Curves for CO

    NASA Technical Reports Server (NTRS)

    Tobias, Irwin; Fallon, Robert J.; Vanderslice, Joseph T.

    1960-01-01

    Potential energy curves for the Chi (sup 1) Epsilon (sup plus), alpha (sup 3) II (sub r), alpha prime (sup 3) epsilon (sup plus), d (sup 3) delta, e (sup 3) Epsilon (sup minus), Alpha (sup 1) II, and Beta (sup 1) Epsilon (sup plus), electronic states of the CO molecule have been calculated by the Rydberg-Klein-Rees method. The curve for the A III state will have to bend sharply in the range between 1.9 and 2.1 angstroms or it will have to pass through a maximum to reach the proper dissociation limit.

  8. Generalised dissociative amnesia.

    PubMed

    Sengupta, S N; Jena, S; Saxena, S

    1993-12-01

    A case of generalised dissociative amnesia is presented, which illustrates several characteristic features of this uncommon condition. The case showed poor response to thiopentone interviews and in vivo cueing. Amnesia had persisted at six months follow up.

  9. Barcoding melting curve analysis for rapid, sensitive, and discriminating authentication of saffron (Crocus sativus L.) from its adulterants.

    PubMed

    Jiang, Chao; Cao, Liang; Yuan, Yuan; Chen, Min; Jin, Yan; Huang, Luqi

    2014-01-01

    Saffron (Crocus sativus L.) is one of the most important and expensive medicinal spice products in the world. Because of its high market value and premium price, saffron is often adulterated through the incorporation of other materials, such as Carthamus tinctorius L. and Calendula officinalis L. flowers, Hemerocallis L. petals, Daucus carota L. fleshy root, Curcuma longa L. rhizomes, Zea may L., and Nelumbo nucifera Gaertn. stigmas. To develop a straightforward, nonsequencing method for rapid, sensitive, and discriminating detection of these adulterants in traded saffron, we report here the application of a barcoding melting curve analysis method (Bar-MCA) that uses the universal chloroplast plant DNA barcoding region trnH-psbA to identify adulterants. When amplified at DNA concentrations and annealing temperatures optimized for the curve analysis, peaks were formed at specific locations for saffron (81.92°C) and the adulterants: D. carota (81.60°C), C. tinctorius (80.10°C), C. officinalis (79.92°C), Dendranthema morifolium (Ramat.) Tzvel. (79.62°C), N. nucifera (80.58°C), Hemerocallis fulva (L.) L. (84.78°C), and Z. mays (84.33°C). The constructed melting curves for saffron and its adulterants have significantly different peak locations or shapes. In conclusion, Bar-MCA could be a faster and more cost-effective method to authenticate saffron and detect its adulterants. PMID:25548775

  10. Barcoding Melting Curve Analysis for Rapid, Sensitive, and Discriminating Authentication of Saffron (Crocus sativus L.) from Its Adulterants

    PubMed Central

    Cao, Liang; Yuan, Yuan; Chen, Min; Jin, Yan; Huang, Luqi

    2014-01-01

    Saffron (Crocus sativus L.) is one of the most important and expensive medicinal spice products in the world. Because of its high market value and premium price, saffron is often adulterated through the incorporation of other materials, such as Carthamus tinctorius L. and Calendula officinalis L. flowers, Hemerocallis L. petals, Daucus carota L. fleshy root, Curcuma longa L. rhizomes, Zea may L., and Nelumbo nucifera Gaertn. stigmas. To develop a straightforward, nonsequencing method for rapid, sensitive, and discriminating detection of these adulterants in traded saffron, we report here the application of a barcoding melting curve analysis method (Bar-MCA) that uses the universal chloroplast plant DNA barcoding region trnH-psbA to identify adulterants. When amplified at DNA concentrations and annealing temperatures optimized for the curve analysis, peaks were formed at specific locations for saffron (81.92°C) and the adulterants: D. carota (81.60°C), C. tinctorius (80.10°C), C. officinalis (79.92°C), Dendranthema morifolium (Ramat.) Tzvel. (79.62°C), N. nucifera (80.58°C), Hemerocallis fulva (L.) L. (84.78°C), and Z. mays (84.33°C). The constructed melting curves for saffron and its adulterants have significantly different peak locations or shapes. In conclusion, Bar-MCA could be a faster and more cost-effective method to authenticate saffron and detect its adulterants. PMID:25548775

  11. Barcoding melting curve analysis for rapid, sensitive, and discriminating authentication of saffron (Crocus sativus L.) from its adulterants.

    PubMed

    Jiang, Chao; Cao, Liang; Yuan, Yuan; Chen, Min; Jin, Yan; Huang, Luqi

    2014-01-01

    Saffron (Crocus sativus L.) is one of the most important and expensive medicinal spice products in the world. Because of its high market value and premium price, saffron is often adulterated through the incorporation of other materials, such as Carthamus tinctorius L. and Calendula officinalis L. flowers, Hemerocallis L. petals, Daucus carota L. fleshy root, Curcuma longa L. rhizomes, Zea may L., and Nelumbo nucifera Gaertn. stigmas. To develop a straightforward, nonsequencing method for rapid, sensitive, and discriminating detection of these adulterants in traded saffron, we report here the application of a barcoding melting curve analysis method (Bar-MCA) that uses the universal chloroplast plant DNA barcoding region trnH-psbA to identify adulterants. When amplified at DNA concentrations and annealing temperatures optimized for the curve analysis, peaks were formed at specific locations for saffron (81.92°C) and the adulterants: D. carota (81.60°C), C. tinctorius (80.10°C), C. officinalis (79.92°C), Dendranthema morifolium (Ramat.) Tzvel. (79.62°C), N. nucifera (80.58°C), Hemerocallis fulva (L.) L. (84.78°C), and Z. mays (84.33°C). The constructed melting curves for saffron and its adulterants have significantly different peak locations or shapes. In conclusion, Bar-MCA could be a faster and more cost-effective method to authenticate saffron and detect its adulterants.

  12. Buckling Analysis of Anisotropic Curved Panels and Shells with Variable Curvature

    NASA Technical Reports Server (NTRS)

    Jaunky, Navin; Knight, Norman F., Jr.; Ambur, Damodar R.

    1998-01-01

    A buckling formulation for anisotropic curved panels with variable curvature is presented in this paper. The variable curvature panel is assumed to consists of two or more panels of constant but different curvatures. Bezier functions are used as Ritz functions Displacement (C(sup 0)), and slope (C(sup 1)) continuities between segments are imposed by manipulation of the Bezier control points. A first-order shear-deformation theory is used in the buckling formulation. Results obtained from the present formulation are compared with those from finite element simulations and are found to be in good agreement.

  13. The Application of the Principal Curve Analysis Technique to Smooth Beam Lines

    SciTech Connect

    Friedsam, H.; Oren, W.; /SLAC

    2005-08-12

    The smoothness of a beam line refers to the quality of the relative positioning of a number of adjacent beam guiding components. The fact that smoothness is of highest priority when positioning magnets can be seen in the local tolerances imposed by the beam optics. In the past, smoothing has been done by separating horizontal and vertical misalignments and then applying some sort of analytical or manual ''feathering'' technique. The Stanford Linear Collider (SLC) did not easily lend itself to this sort of smoothing because of the highly coupled nature of its pitched and rolled beam line. This paper will discuss an attempt to develop a repeatable method which is independent of the inconsistencies of human judgment and can simultaneously smooth in two or more dimensions. Four major goals were defined for the smoothing algorithm used on the SLC alignment. The first, was to simultaneously model errors for both horizontal and vertical directions. Secondly, a smooth curve whose shape was suggested by the data and not by a predetermined model was implied by the fact that unknown systematic errors were being eliminated. Thirdly, this curve must be a reproducibly fit, independent of the inconsistent nature of human judgment. Fourth, the result of the procedure was to minimize the number and size of magnet movements to reach the final alignment criteria.

  14. An experimental validation of the dissociation hypothesis for sonoluminescence and an extension to the analysis of multiple frequency drives

    NASA Astrophysics Data System (ADS)

    Ketterling, Jeffrey Alan

    Single bubble sonoluminescence (SBSL) stability is examined for water partially saturated with pure noble gas and noble gas-nitrogen mixtures in order to examine the dissociation hypothesis (DH) of D. Lohse and S. Hilgenfeldt [J. Chem. Phys. 107, 6986 (1997)]. A stroboscopic imaging system was employed to measure ambient radius (Ro) and the maximum bubble radius (Rmax). Drive pressure (Pa) was calculated by fitting the Rayleigh-Plesset equation to Ro and Rmax. Relative light intensity was recorded with a photomultiplier tube. Excellent agreement was found between experimental Ro - Pa phase diagrams and predictions from DH over a wide range of parameters. DH posits that diatomic gas content determines a stable dissociation equilibrium and stable non-SL behavior, and noble gas content determines a stable diffusive equilibrium and stable SL behavior. Ro - Pa values for unstable SL and SL extinction appear to agree with a calculation of the n = 4 shape threshold. The collected data permits a thorough mapping of SBSL at a single frequency (33.4 kHz). The predictions of DH were also examined in terms of expansion ratio (ER, Rmax/Ro) vs. Pa, providing a means to quantify the energy concentration at collapse and trends in light emission. Helium, neon, and argon all showed similar emission intensities for the same initial conditions. Krypton was noticeably brighter, and xenon was by far the brightest. Emission intensity was found to increase as ER decreases. The brightest bubbles had the lowest ERs and thus the lowest energy concentration during collapse. Finally, DH is extended to analyze the recent experiments of J. Holzfuss, M. Rüggeberg, and R. Mettin [Phys. Rev. Lett. 81, 1961 (1998)] in which a second harmonic drive signal was used to alter the intensity of SBSL. The second harmonic introduces another pressure and a phase term to the total acoustic drive pressure, adding two more variables under experimental control. Excellent quantitative agreement was seen between

  15. Cognitive Processes in Dissociation: Comment on Giesbrecht et al. (2008)

    PubMed Central

    Bremner, J. Douglas

    2010-01-01

    In “Cognitive Processes in Dissociation: An Analysis of Core Theoretical Assumptions,” published in Psychological Bulletin, Giesbrecht, Lynn, Lilienfeld, and Merckelbach (2008) have challenged the widely accepted trauma theory of dissociation, which holds that dissociative symptoms are caused by traumatic stress. In doing so the authors outline a series of links between various constructs, such as fantasy proneness, cognitive failures, absorption, suggestibility, altered information-processing, dissociation, and amnesia, claiming that these linkages lead to the false conclusion that trauma causes dissociation. A review of the literature, however, shows that these are not necessarily related constructs. Careful examination of their arguments reveals no basis for the conclusion that there is no association between trauma and dissociation. The current comment offers a critical review and rebuttal of the argument of Giesbrecht et al. that there is no relationship between trauma and dissociation. PMID:20063920

  16. Malingering dissociative identity disorder: objective and projective assessment.

    PubMed

    Labott, Susan M; Wallach, Heather R

    2002-04-01

    Verification of dissociative identity disorder presents challenges given the complex nature of the illness. This study addressed the concern that this disorder can be successfully malingered on objective and projective psychological tests. 50 undergraduate women were assigned to a Malingering or a Control condition, then completed the Rorschach Inkblot Test and the Dissociative Experiences Scale II. The Malingering group were asked to simulate dissociative identity disorder; controls received instructions to answer all materials honestly. Analysis indicated that malingerers were significantly more likely to endorse dissociative experiences on the Dissociative Experiences Scale II in the range common to patients with diagnosed dissociative identity disorder. However, on the Rorschach there were no significant differences between the two groups. Results suggest that the assessment of dissociative identity disorder requires a multifaceted approach with both objective and projective assessment tools. Research is needed to assess these issues in clinical populations.

  17. Study of the deterioration mechanism of LiCoO2/graphite cells in charge/discharge cycles using the discharge curve analysis

    NASA Astrophysics Data System (ADS)

    Honkura, Kohei; Horiba, Tatsuo

    2014-10-01

    The differential discharge curve analysis that separates the discharge curve of battery cells into those of the positive and negative electrodes is useful for investigating deterioration mechanisms. We applied it to LiCoO2/graphite cells and investigated the capacity fading mechanisms during charge/discharge cycles. In the initial state, the discharge curves of the cells were reconstructed very well by the discharge curves of the positive and negative electrodes measured in advance. The discharge curve analysis revealed that the initial cell capacities were controlled by the negative electrodes. On the other hand, the capacity of the positive electrode decreased faster than that of the negative electrode during the course of the cycle test. With repeated charge/discharge cycles, the positive electrodes came to control the cell capacities. After that, deep charge/discharge cycles of the positive electrode accelerated the loss of capacity and the increase of the internal resistance. Furthermore, the rapid increase of the internal resistance lowered the accuracy of the discharge curve analysis. Although the discharge curve analysis was still applicable to the cells that were controlled by the positive electrodes, there were some discrepancies around the endpoints of the discharge curves.

  18. A unified approach for nonlinear vibration analysis of curved structures using non-uniform rational B-spline representation

    NASA Astrophysics Data System (ADS)

    Askari, H.; Esmailzadeh, E.; Barari, A.

    2015-09-01

    A novel procedure for the nonlinear vibration analysis of curved beam is presented. The Non-Uniform Rational B-Spline (NURBS) is combined with the Euler-Bernoulli beam theory to define the curvature of the structure. The governing equation of motion and the general frequency formula, using the NURBS variables, is applicable for any type of curvatures, is developed. The Galerkin procedure is implemented to obtain the nonlinear ordinary differential equation of curved system and the multiple time scales method is utilized to find the corresponding frequency responses. As a case study, the nonlinear vibration of carbon nanotubes with different shapes of curvature is investigated. The effect of oscillation amplitude and the waviness on the natural frequency of the curved nanotube is evaluated and the primary resonance case of system with respect to the variations of different parameters is discussed. For the sake of comparison of the results obtained with those from the molecular dynamic simulation, the natural frequencies evaluated from the proposed approach are compared with those reported in literature for few types of carbon nanotube simulation.

  19. Mixed convection analysis in lid-driven cavity with sinusoidally curved bottom wall using CNT-water nanofluid

    NASA Astrophysics Data System (ADS)

    Khan, Mohieminul Islam; Rabbi, Khan Md.; Khan, Saadbin; Mamun, M. A. H.

    2016-07-01

    Mixed convection in a lid-driven enclosure with a curved bottom wall has been investigated using CNT (Carbon Nanotube)-water nanofluid in this paper. The curvature of the bottom wall follows the sine function. Studies have been made with different amplitudes (λ = 0.05, 0.1, 0.15) of the sine function hence wall curvature. The curved wall at the bottom is heated and the top wall is kept at a relatively low temperature. Left vertical and right vertical surface are assumed to be adiabatic. Top wall has been moving at a constant lid velocity U0 at right direction. Galerkin method of FEA (Finite Element Analysis) has been used to solve the governing equations. Different parameters like Richardson number (Ri = 0.1 ˜ 10) at a fixed Reynolds number (Re = 100), solid volume fraction of CNT particle (φ = 0 ˜ 0.09) are used to observe better heat transfer rate. Streamlines, isothermal lines and average Nusselt number plots are included to discuss the result of the investigation. A 2D plot between average Nusselt number and solid volume fraction of CNT-water nanofluid is also given to analyse heat transfer rate. It is observed that higher value of Richardson number shows better heat transfer rate. Finally, the paper concludes that better heat transfer is achieved at higher amplitude (λ = 0.15) of curved surface at higher solid volume fraction (φ = 0.09).

  20. Strategy to improve the quantitative LC-MS analysis of molecular ions resistant to gas-phase collision induced dissociation: application to disulfide-rich cyclic peptides.

    PubMed

    Ciccimaro, Eugene; Ranasinghe, Asoka; D'Arienzo, Celia; Xu, Carrie; Onorato, Joelle; Drexler, Dieter M; Josephs, Jonathan L; Poss, Michael; Olah, Timothy

    2014-12-01

    Due to observed collision induced dissociation (CID) fragmentation inefficiency, developing sensitive liquid chromatography tandem mass spectrometry (LC-MS/MS) assays for CID resistant compounds is especially challenging. As an alternative to traditional LC-MS/MS, we present here a methodology that preserves the intact analyte ion for quantification by selectively filtering ions while reducing chemical noise. Utilizing a quadrupole-Orbitrap MS, the target ion is selectively isolated while interfering matrix components undergo MS/MS fragmentation by CID, allowing noise-free detection of the analyte's surviving molecular ion. In this manner, CID affords additional selectivity during high resolution accurate mass analysis by elimination of isobaric interferences, a fundamentally different concept than the traditional approach of monitoring a target analyte's unique fragment following CID. This survivor-selected ion monitoring (survivor-SIM) approach has allowed sensitive and specific detection of disulfide-rich cyclic peptides extracted from plasma.

  1. DISSOCIATION OF 70S RIBOSOMES: SOME PROPERTIES OF THE DISSOCIATING FACTOR FROM Bacillus stearothermophilus AND Escherichia coli*

    PubMed Central

    Bade, Ernesto G.; González, Nelida S.; Algranati, Israel D.

    1969-01-01

    A protein factor which produces in vitro dissociation of 70S particles into 30S and 50S subunits has been obtained from Bacillus stearothermophilus and Escherichia coli. The factor could be extracted from ribosomes, polyribosomes, and S100 supernatant. The kinetics and temperature curve of the dissociation process in the B. stearothermophilus system have been studied and compared with the reaction in the E. coli system. No species specificity was observed when hybrid mixtures of ribosomes and dissociating factor from both bacteria were used. The wide variations of dissociating activity in cells at different stages of growth and the capacity of the liberated subunits to carry out polypeptide synthesis suggest that the dissociating factor has a physiological role. PMID:4901704

  2. Detection analysis of surface hydroxyl active sites and simulation calculation of the surface dissociation constants of aqueous diatomite suspensions

    NASA Astrophysics Data System (ADS)

    Ma, Shu-Cui; Wang, Zhi-Gang; Zhang, Ji-Lin; Sun, De-Hui; Liu, Gui-Xia

    2015-02-01

    The surface properties of the diatomite were investigated using nitrogen adsorption/deadsorption isotherms, TG-DSC, FTIR, and XPS, and surface protonation-deprotonation behavior was determined by continuous acid-base potentiometric titration technique. The diatomite sample with porous honeycomb structure has a BET specific surface area of 10.21 m2/g and large numbers of surface hydroxyl functional groups (i.e. tbnd Si-OH, tbnd Fe-OH, and tbnd Al-OH). These surface hydroxyls can be protonated or deprotonated depending on the pH of the suspension. The experimental potentiometric data in two different ionic strength solutions (0.1 and 0.05 mol/L NaCl) were fitted using ProtoFit GUI V2.1 program by applying diffuse double layer model (DLM) with three amphoteric sites and minimizing the sum of squares between a dataset derivative function and a model derivative function. The optimized surface parameters (i.e. surface dissociation constants (log K1, log K2) and surface site concentrations (log C)) of the sample were obtained. Based on the optimized surface parameters, the surface species distribution was calculated using Program-free PHREEQC 3.1.2. Thus, this work reveals considerable new information about surface protonation-deprotonation processes and surface adsorptive behaviors of the diatomite, which helps us to effectively use the cheap and cheerful diatomite clay adsorbent.

  3. Collision-induced dissociation analysis of negative atmospheric ion adducts in atmospheric pressure corona discharge ionization mass spectrometry.

    PubMed

    Sekimoto, Kanako; Takayama, Mitsuo

    2013-05-01

    Collision-induced dissociation (CID) experiments were performed on atmospheric ion adducts [M + R](-) formed between various types of organic compounds M and atmospheric negative ions R(-) [such as O2(-), HCO3(-), COO(-)(COOH), NO2(-), NO3(-), and NO3(-)(HNO3)] in negative-ion mode atmospheric pressure corona discharge ionization (APCDI) mass spectrometry. All of the [M + R](-) adducts were fragmented to form deprotonated analytes [M - H](-) and/or atmospheric ions R(-), whose intensities in the CID spectra were dependent on the proton affinities of the [M - H](-) and R(-) fragments. Precursor ions [M + R](-) for which R(-) have higher proton affinities than [M - H](-) formed [M - H](-) as the dominant product. Furthermore, the CID of the adducts with HCO3(-) and NO3(-)(HNO3) led to other product ions such as [M + HO](-) and NO3(-), respectively. The fragmentation behavior of [M + R](-) for each R(-) observed was independent of analyte type (e.g., whether the analyte was aliphatic or aromatic, or possessed certain functional groups).

  4. Comparative analysis of numerical simulation and PIV experimental results for a flow caused by field-enhanced dissociation

    NASA Astrophysics Data System (ADS)

    Chirkov, V. A.; Komarov, D. K.; Stishkov, Y. K.; Vasilkov, S. A.

    2015-10-01

    The paper studies a particular electrode system, two flat parallel electrodes with a dielectric plate having a small circular hole between them. Its main feature is that the region of the strong electric field is located far from metal electrode surfaces, which permits one to preclude the injection charge formation and to observe field-enhanced dissociation (the Wien effect) leading to the emergence of electrohydrodynamic (EHD) flow. The described electrode system was studied by way of both computer simulation and experiment. The latter was conducted with the help of the particle image velocimetry (or PIV) technique. The numerical research used trusted software package COMSOL Multiphysics, which allows solving the complete set of EHD equations and obtaining the EHD flow structure. Basing on the computer simulation and the comparison with experimental investigation results, it was concluded that the Wien effect is capable of causing intense (several centimeters per second) EHD flows in low-conducting liquids and has to be taken into account when dealing with EHD devices.

  5. A simple and rapid protocol to non-enzymatically dissociate fresh human tissues for the analysis of infiltrating lymphocytes.

    PubMed

    Garaud, Soizic; Gu-Trantien, Chunyan; Lodewyckx, Jean-Nicolas; Boisson, Anaïs; De Silva, Pushpamali; Buisseret, Laurence; Migliori, Edoardo; Libin, Myriam; Naveaux, Céline; Duvillier, Hugues; Willard-Gallo, Karen

    2014-01-01

    The ability of malignant cells to evade the immune system, characterized by tumor escape from both innate and adaptive immune responses, is now accepted as an important hallmark of cancer. Our research on breast cancer focuses on the active role that tumor infiltrating lymphocytes play in tumor progression and patient outcome. Toward this goal, we developed a methodology for the rapid isolation of intact lymphoid cells from normal and abnormal tissues in an effort to evaluate them proximate to their native state. Homogenates prepared using a mechanical dissociator show both increased viability and cell recovery while preserving surface receptor expression compared to enzyme-digested tissues. Furthermore, enzymatic digestion of the remaining insoluble material did not recover additional CD45(+) cells indicating that quantitative and qualitative measurements in the primary homogenate likely genuinely reflect infiltrating subpopulations in the tissue fragment. The lymphoid cells in these homogenates can be easily characterized using immunological (phenotype, proliferation, etc.) or molecular (DNA, RNA and/or protein) approaches. CD45(+) cells can also be used for subpopulation purification, in vitro expansion or cryopreservation. An additional benefit of this approach is that the primary tissue supernatant from the homogenates can be used to characterize and compare cytokines, chemokines, immunoglobulins and antigens present in normal and malignant tissues. This protocol functions extremely well for human breast tissues and should be applicable to a wide variety of normal and abnormal tissues. PMID:25548995

  6. Type curve analysis of inertial effects in the response of a well to a slug test.

    USGS Publications Warehouse

    Kipp, K.L.

    1985-01-01

    The water level response to a slug or bailer test in a well completed in a confined aquifer, has been evaluated taking into account well-bore storage and inertial effects of the water column in the well. The response range, from overdamped with negligible inertial effects to damped oscillations, was covered employing numerical inversions of the Laplace-transform solution. By scaling the time with respect to the undamped natural period of the well-aquifer system and by using the damping parameter for a second-order damped, inertial-elastic system, a set of type curves was constructed that enables water level response data from a slug or bailer test to be analyzed under conditions where the inertial parameter is large.-from Author

  7. Modal analysis using a Fourier analyzer, curve-fitting, and modal tuning

    NASA Technical Reports Server (NTRS)

    Craig, R. R., Jr.; Chung, Y. T.

    1981-01-01

    The proposed modal test program differs from single-input methods in that preliminary data may be acquired using multiple inputs, and modal tuning procedures may be employed to define closely spaced frquency modes more accurately or to make use of frequency response functions (FRF's) which are based on several input locations. In some respects the proposed modal test proram resembles earlier sine-sweep and sine-dwell testing in that broadband FRF's are acquired using several input locations, and tuning is employed to refine the modal parameter estimates. The major tasks performed in the proposed modal test program are outlined. Data acquisition and FFT processing, curve fitting, and modal tuning phases are described and examples are given to illustrate and evaluate them.

  8. Quantitative vibrational imaging by hyperspectral stimulated Raman scattering microscopy and multivariate curve resolution analysis.

    PubMed

    Zhang, Delong; Wang, Ping; Slipchenko, Mikhail N; Ben-Amotz, Dor; Weiner, Andrew M; Cheng, Ji-Xin

    2013-01-01

    Spectroscopic imaging has been an increasingly critical approach for unveiling specific molecules in biological environments. Toward this goal, we demonstrate hyperspectral stimulated Raman loss (SRL) imaging by intrapulse spectral scanning through a femtosecond pulse shaper. The hyperspectral stack of SRL images is further analyzed by a multivariate curve resolution (MCR) method to reconstruct quantitative concentration images for each individual component and retrieve the corresponding vibrational Raman spectra. Using these methods, we demonstrate quantitative mapping of dimethyl sulfoxide concentration in aqueous solutions and in fat tissue. Moreover, MCR is performed on SRL images of breast cancer cells to generate maps of principal chemical components along with their respective vibrational spectra. These results show the great capability and potential of hyperspectral SRL microscopy for quantitative imaging of complicated biomolecule mixtures through resolving overlapped Raman bands.

  9. On-chip magnetic bead-based DNA melting curve analysis using a magnetoresistive sensor

    NASA Astrophysics Data System (ADS)

    Rizzi, Giovanni; Østerberg, Frederik W.; Henriksen, Anders D.; Dufva, Martin; Hansen, Mikkel F.

    2015-04-01

    We present real-time measurements of DNA melting curves in a chip-based system that detects the amount of surface-bound magnetic beads using magnetoresistive magnetic field sensors. The sensors detect the difference between the amount of beads bound to the top and bottom sensor branches of the differential sensor geometry. The sensor surfaces are functionalized with wild type (WT) and mutant type (MT) capture probes, differing by a single base insertion (a single nucleotide polymorphism, SNP). Complementary biotinylated targets in suspension couple streptavidin magnetic beads to the sensor surface. The beads are magnetized by the field arising from the bias current passed through the sensors. We demonstrate the first on-chip measurements of the melting of DNA hybrids upon a ramping of the temperature. This overcomes the limitation of using a single washing condition at constant temperature. Moreover, we demonstrate that a single sensor bridge can be used to genotype a SNP.

  10. Single Cell Wall Nonlinear Mechanics Revealed by a Multiscale Analysis of AFM Force-Indentation Curves.

    PubMed

    Digiuni, Simona; Berne-Dedieu, Annik; Martinez-Torres, Cristina; Szecsi, Judit; Bendahmane, Mohammed; Arneodo, Alain; Argoul, Françoise

    2015-05-01

    Individual plant cells are rather complex mechanical objects. Despite the fact that their wall mechanical strength may be weakened by comparison with their original tissue template, they nevertheless retain some generic properties of the mother tissue, namely the viscoelasticity and the shape of their walls, which are driven by their internal hydrostatic turgor pressure. This viscoelastic behavior, which affects the power-law response of these cells when indented by an atomic force cantilever with a pyramidal tip, is also very sensitive to the culture media. To our knowledge, we develop here an original analyzing method, based on a multiscale decomposition of force-indentation curves, that reveals and quantifies for the first time the nonlinearity of the mechanical response of living single plant cells upon mechanical deformation. Further comparing the nonlinear strain responses of these isolated cells in three different media, we reveal an alteration of their linear bending elastic regime in both hyper- and hypotonic conditions. PMID:25954881

  11. Frequency analysis of curved nano-sandwich structure based on a nonlocal model

    NASA Astrophysics Data System (ADS)

    Rahmani, O.; Hosseini, S. A. H.; Hayati, H.

    2016-04-01

    In this paper, we study the vibration of curved nano-sandwich (CNS) with considering the influence of core shear based on the Eringen nonlocal theory. The equation of motion is derived and exact solution for the natural frequencies of CNS is presented. The proposed nonlocal model includes a material length scale parameter that can capture the size effect in CNS beam. The effects of important parameters, such as the thickness to length ratio, nonlocal parameter and mode number on the frequencies of CNS are investigated. The result of our research shows that as the opening angle increases, the amount of natural frequencies decrease. We have additionally validate, our results against previous research works which showed good agreement.

  12. Light Curve Analysis for W UMa-Type Eclipsing Binary Star Systems

    NASA Astrophysics Data System (ADS)

    Henderson, Scott; Peach, N.; Olsen, T.

    2006-12-01

    We report results from summer 2006 in an ongoing study of eclipsing binary stars. Our investigations have focused on the measurement and interpretation of light curves for W UMa-type systems 44i Boötis and VW Cephei. These contact binaries have component stars of spectral type G, and revolve with periods of 6.43 and 6.67 hours. Dome automation and scripting capabilities introduced this summer have significantly reduced experimental uncertainties in our data. In support of previous findings we continue to observe an increase in the orbital period of 44i Boo at a rate of 10.4 µs/epoch or 14.2 ms/yr. Residuals computed after incorporating the increasing period suggest an underlying sinusoidal oscillation with a 61.5 year period and amplitude of 648 seconds. AAPT Member Thomas Olsen is sponsoring the lead presenter, SPS Member Scott Henderson, and the co-presenter, SPS Member Nick Peach.

  13. Single Cell Wall Nonlinear Mechanics Revealed by a Multiscale Analysis of AFM Force-Indentation Curves

    PubMed Central

    Digiuni, Simona; Berne-Dedieu, Annik; Martinez-Torres, Cristina; Szecsi, Judit; Bendahmane, Mohammed; Arneodo, Alain; Argoul, Françoise

    2015-01-01

    Individual plant cells are rather complex mechanical objects. Despite the fact that their wall mechanical strength may be weakened by comparison with their original tissue template, they nevertheless retain some generic properties of the mother tissue, namely the viscoelasticity and the shape of their walls, which are driven by their internal hydrostatic turgor pressure. This viscoelastic behavior, which affects the power-law response of these cells when indented by an atomic force cantilever with a pyramidal tip, is also very sensitive to the culture media. To our knowledge, we develop here an original analyzing method, based on a multiscale decomposition of force-indentation curves, that reveals and quantifies for the first time the nonlinearity of the mechanical response of living single plant cells upon mechanical deformation. Further comparing the nonlinear strain responses of these isolated cells in three different media, we reveal an alteration of their linear bending elastic regime in both hyper- and hypotonic conditions. PMID:25954881

  14. Bradford Curves.

    ERIC Educational Resources Information Center

    Rousseau, Ronald

    1994-01-01

    Discussion of informetric distributions shows that generalized Leimkuhler functions give proper fits to a large variety of Bradford curves, including those exhibiting a Groos droop or a rising tail. The Kolmogorov-Smirnov test is used to test goodness of fit, and least-square fits are compared with Egghe's method. (Contains 53 references.) (LRW)

  15. Dissociation as complex adaptation.

    PubMed

    Sel, R

    1997-03-01

    In this article the general theory of complex adaptive systems, substantiated by non-linear dynamics, will be used to put the dissociative disorders into a theoretical framework and clarify their genesis and presentation. When a system is far out of equilibrium, dissipative structures may be formed ('order out of chaos', as Prigogine (1) has put it). These structures provide the starting point for further evolution and co-evolution of competing groups of functional schemata divided on a bifurcation surface. Complex adaptation is almost inevitable in a complicated system (such as the brain) driven by non-linear dynamics. Dissociation is thus regarded as a consequence of adaptation to a chaotic environment rich in contrasts. In a sufficiently complex environment a person with dissociative identity disorder is more adapted and thus more likely to occur than a 'normal' monopersonality individual.

  16. DSA Analysis of IRM Curves for Hydrocarbon Microseepage Characterization in Oil Fields From Eastern and Western Venezuela

    NASA Astrophysics Data System (ADS)

    Aldana, M.; Costanzo-Alvarez, V.; Gonzalez, C.; Gomez, L.

    2009-05-01

    During the last few years we have performed surface reservoir characterization at some Venezuelan oil fields using rock magnetic properties. We have tried to identify, at shallow levels, the "oil magnetic signature" of subjacent reservoirs. Recent data obtained from eastern Venezuela (San Juan field) emphasizes the differences between rock magnetic data from eastern and western oil fields. These results support the hypothesis of different authigenic processes. To better characterize hydrocarbon microseepage in both cases, we apply a new method to analyze IRM curves in order to find out the main magnetic phases responsible for the observed magnetic susceptibility (MS) anomalies. This alternative method is based on a Direct Signal Analysis (DSA) of the IRM in order to identify the number and type of magnetic components. According to this method, the IRM curve is decomposed as the sum of N elementary curves (modeled using the expression proposed by Robertson and France, 1994) whose mean coercivities vary in the interval of the measured magnetic field. The result is an adjusted spectral histogram from which the number of main contributions, their widths and mean coercivities, associated with the number and type of magnetic minerals, can be obtained. This analysis indicates that in western fields the main magnetic mineralogy is magnetite. Conversely in eastern fields, the MS anomalies are mainly caused by the presence of Fe sulphides (i.e. greigite). These results support the hypothesis of two different processes. In western fields a net electron transfer from the organic matter, degraded by hydrocarbon gas leakage, should occur precipitating Fe(II) magnetic minerals (e.g. magnetite). On the other hand, high concentrations of H2S at shallow depth levels, might allow the formation of secondary Fe-sulphides in eastern fields.

  17. A TRANSIT TIMING ANALYSIS OF NINE RISE LIGHT CURVES OF THE EXOPLANET SYSTEM TrES-3

    SciTech Connect

    Gibson, N. P.; Pollacco, D.; Simpson, E. K.; Barros, S.; Joshi, Y. C.; Todd, I.; Keenan, F. P.; Skillen, I.; Benn, C.; Christian, D.; Hrudkova, M.; Steele, I. A.

    2009-08-01

    We present nine newly observed transits of TrES-3, taken as part of a transit timing program using the RISE instrument on the Liverpool Telescope. A Markov-Chain Monte Carlo analysis was used to determine the planet-star radius ratio and inclination of the system, which were found to be R{sub p} /R {sub *} = 0.1664{sup +0.0011} {sub -0.0018} and i = 81.73{sup +0.13} {sub -0.04}, respectively, consistent with previous results. The central transit times and uncertainties were also calculated, using a residual-permutation algorithm as an independent check on the errors. A re-analysis of eight previously published TrES-3 light curves was conducted to determine the transit times and uncertainties using consistent techniques. Whilst the transit times were not found to be in agreement with a linear ephemeris, giving {chi}{sup 2} = 35.07 for 15 degrees of freedom, we interpret this to be the result of systematics in the light curves rather than a real transit timing variation. This is because the light curves that show the largest deviation from a constant period either have relatively little out-of-transit coverage or have clear systematics. A new ephemeris was calculated using the transit times and was found to be T{sub c} (0) = 2454632.62610 {+-} 0.00006 HJD and P = 1.3061864 {+-} 0.0000005 days. The transit times were then used to place upper mass limits as a function of the period ratio of a potential perturbing planet, showing that our data are sufficiently sensitive to have probed sub-Earth mass planets in both interior and exterior 2:1 resonances, assuming that the additional planet is in an initially circular orbit.

  18. Analysis of the Validity of Environmental Kuznets Curve for the Baltic States

    NASA Astrophysics Data System (ADS)

    Lapinskienė, Giedrė; Tvaronavičienė, Manuela; Vaitkus, Pranas

    2013-12-01

    The paper analyses a traditional Environmental Kuznets Curve (EKC) relationship between greenhouse gases (GHG) and gross domestic product (GDP), extending the research to include some additional factors, such as environmental tax, research and development expenditure, implicit tax rate on energy, primary production of coal and lignite, energy intensity of the economy taken from the Eurostat database. The EKC indicates that, at the early stages of economic growth, pollution increases with the growing use of resources, but when a certain level of income per capita is reached, the trend reverses so that, at a higher development stage, further economic growth leads to the improvement of the environment. In the first part of the research, the validity of the reduced EKC for the Baltic region for the period 1995-2008 is determined. In the second part, the impact of selected factors is statistically tested. In both cases, the standard cubic equation is used because it is believed that this model is the most accurate for the development stage of this region. The research results may be useful for climate change policy design.

  19. Stability and dynamic analysis of a slender column with curved longitudinal stiffeners

    NASA Technical Reports Server (NTRS)

    Lake, Mark S.

    1989-01-01

    The results of a stability design study are presented for a slender column with curved longitudinal stiffeners for large space structure applications. Linear stability analyses are performed using a link-plate representation of the stiffeners to determine stiffener local buckling stresses. Results from a set of parametric analyses are used to determine an approximate explicit expression for stiffener local buckling in terms of its geometric parameters. This expression along with other equations governing column stability and mass are assembled into a determinate system describing minimum mass stiffened column design. An iterative solution is determined to solve this system and a computer program incorporating this routine is presented. Example design problems are presented which verify the solution accuracy and illustrate the implementation of the solution routine. Also, observations are made which lead to a greatly simplified first iteration design equation relating the percent increase in column mass to the percent increase in column buckling load. From this, generalizations are drawn as to the mass savings offered by the stiffened column concept. Finally, the percent increase in fundamental column vibration frequency due to the addition of deployable stiffeners is studied.

  20. Development of oral reading fluency in children with speech or language impairments: A growth curve analysis

    PubMed Central

    Puranik, Cynthia S.; Petscher, Yaacov; Al Otaiba, Stephanie; Catts, Hugh W.; Lonigan, Christopher J.

    2012-01-01

    This longitudinal study used piece-wise growth curve analyses to examine growth patterns in oral reading fluency for students diagnosed with speech (SI) or language impairments (LI) from first through third grade (N = 1,991). The main finding of this study was that a diagnosis of SI or LI can have a detrimental effect on early reading skills and these problems can be persistent. The results indicate differences between subgroups in growth trajectories that were evident in first grade. These differences were associated with a students’ speech or language status. A large proportion of students with SI or LI did not meet grade-level reading fluency benchmarks. Overall students with SI showed better performance than students with LI. Reading fluency performance was negatively related to the persistence of the SI or LI; the lowest performing students were those originally identified with SI or LI whose diagnosis changed to a learning disability. The results underscore the need to identify, monitor, and address reading fluency difficulties early among students with SI or LI. PMID:18625782

  1. Vertically stratified two-phase flow in a curved channel: Insights from a domain perturbation analysis

    SciTech Connect

    Garg, P.; Picardo, J. R.; Pushpavanam, S.

    2014-07-15

    In this work, we investigate the fully developed flow field of two vertically stratified fluids (one phase flowing above the other) in a curved channel of rectangular cross section. The domain perturbation technique is applied to obtain an analytical solution in the asymptotic limit of low Reynolds numbers and small curvature ratios (the ratio of the width of the channel to its radius of curvature). The accuracy of this solution is verified by comparison with numerical simulations of the nonlinear equations. The flow is characterized by helical vortices within each fluid, which are driven by centrifugal forces. The number of vortices and their direction of circulation varies with the parameters of the system (the volume fraction, viscosity ratio, and Reynolds numbers). We identify nine distinct flow patterns and organize the parameter space into corresponding flow regimes. We show that the fully developed interface between the fluids is not horizontal, in general, but is deformed by normal stresses associated with the circulatory flow. The results are especially significant for flows in microchannels, where the Reynolds numbers are small. The mathematical results in this paper include an analytical solution to two coupled biharmonic partial differential equations; these equations arise in two-phase, two-dimensional Stokes flows.

  2. A novel three-dimensional smile analysis based on dynamic evaluation of facial curve contour

    NASA Astrophysics Data System (ADS)

    Lin, Yi; Lin, Han; Lin, Qiuping; Zhang, Jinxin; Zhu, Ping; Lu, Yao; Zhao, Zhi; Lv, Jiahong; Lee, Mln Kyeong; Xu, Yue

    2016-02-01

    The influence of three-dimensional facial contour and dynamic evaluation decoding on factors of smile esthetics is essential for facial beauty improvement. However, the kinematic features of the facial smile contour and the contribution from the soft tissue and underlying skeleton are uncharted. Here, the cheekbone-maxilla contour and nasolabial fold were combined into a “smile contour” delineating the overall facial topography emerges prominently in smiling. We screened out the stable and unstable points on the smile contour using facial motion capture and curve fitting, before analyzing the correlation between soft tissue coordinates and hard tissue counterparts of the screened points. Our finding suggests that the mouth corner region was the most mobile area characterizing smile expression, while the other areas remained relatively stable. Therefore, the perioral area should be evaluated dynamically while the static assessment outcome of other parts of the smile contour contribute partially to their dynamic esthetics. Moreover, different from the end piece, morphologies of the zygomatic area and the superior part of the nasolabial crease were determined largely by the skeleton in rest, implying the latter can be altered by orthopedic or orthodontic correction and the former better improved by cosmetic procedures to improve the beauty of smile.

  3. Analyzing Exercise Behaviors during the College Years: Results from Latent Growth Curve Analysis

    PubMed Central

    Wittman, Werner

    2016-01-01

    The objective of this study is to analyze changes in the predictors of physical activity behavior among college students. The Theory of Planned Behavior served as its theoretical framework. Methods: Among an initial sample of 417 college students, 195 participants completed a validated questionnaire measuring attitudes, subjective norms, perceived control, intentions and self-reported physical activity, at the beginning and end of each of 3 college semesters. Latent growth curve modeling analyses were conducted to examine the relationships between the trajectories of changes in PA, intentions, attitudes, subjective norms, and perceived control. Results: Good fit indices supported the validity of the proposed longitudinal model (CFI > .97, RMSEA < .05). Changes in perceived control (γ = 0.57) were significantly linked with changes in intentions (p < .05). Perceived control (γ = 0.28) and intention growth (γ = 0.36) predicted behavior changes (p < .05). No gender differences were observed on attitudes, subjective norms and perceived control (p > .10). However, girls tend to have higher growth parameters on intentions and physical activity (p < .05). In summary, intentions and physical activity has significantly increased over 3 college semesters (growth parameters significant at p < .05). Conclusions: This study demonstrated that attitudes and perceived control are key determinants regarding the intentions of being active. On a longer term perspective, future physical activity interventions should focus on the enhancement of students’ perceived control. Such educational context should help in promoting the adoption of an active lifestyle during college. PMID:27124179

  4. Secondary flow structure in a model curved artery: 3D morphology and circulation budget analysis

    NASA Astrophysics Data System (ADS)

    Bulusu, Kartik V.; Plesniak, Michael W.

    2015-11-01

    In this study, we examined the rate of change of circulation within control regions encompassing the large-scale vortical structures associated with secondary flows, i.e. deformed Dean-, Lyne- and Wall-type (D-L-W) vortices at planar cross-sections in a 180° curved artery model (curvature ratio, 1/7). Magnetic resonance velocimetry (MRV) and particle image velocimetry (PIV) experiments were performed independently, under the same physiological inflow conditions (Womersley number, 4.2) and using Newtonian blood-analog fluids. The MRV-technique performed at Stanford University produced phase-averaged, three-dimensional velocity fields. Secondary flow field comparisons of MRV-data to PIV-data at various cross-sectional planes and inflow phases were made. A wavelet-decomposition-based approach was implemented to characterize various secondary flow morphologies. We hypothesize that the persistence and decay of arterial secondary flow vortices is intrinsically related to the influence of the out-of-plane flow, tilting, in-plane convection and diffusion-related factors within the control regions. Evaluation of these factors will elucidate secondary flow structures in arterial hemodynamics. Supported by the National Science Foundation under Grant Number CBET-0828903, and GW Center for Biomimetics and Bioinspired Engineering (COBRE). The MRV data were acquired at Stanford University in collaboration with Christopher Elkins and John Eaton.

  5. A novel three-dimensional smile analysis based on dynamic evaluation of facial curve contour.

    PubMed

    Lin, Yi; Lin, Han; Lin, Qiuping; Zhang, Jinxin; Zhu, Ping; Lu, Yao; Zhao, Zhi; Lv, Jiahong; Lee, Mln Kyeong; Xu, Yue

    2016-02-25

    The influence of three-dimensional facial contour and dynamic evaluation decoding on factors of smile esthetics is essential for facial beauty improvement. However, the kinematic features of the facial smile contour and the contribution from the soft tissue and underlying skeleton are uncharted. Here, the cheekbone-maxilla contour and nasolabial fold were combined into a "smile contour" delineating the overall facial topography emerges prominently in smiling. We screened out the stable and unstable points on the smile contour using facial motion capture and curve fitting, before analyzing the correlation between soft tissue coordinates and hard tissue counterparts of the screened points. Our finding suggests that the mouth corner region was the most mobile area characterizing smile expression, while the other areas remained relatively stable. Therefore, the perioral area should be evaluated dynamically while the static assessment outcome of other parts of the smile contour contribute partially to their dynamic esthetics. Moreover, different from the end piece, morphologies of the zygomatic area and the superior part of the nasolabial crease were determined largely by the skeleton in rest, implying the latter can be altered by orthopedic or orthodontic correction and the former better improved by cosmetic procedures to improve the beauty of smile.

  6. A novel three-dimensional smile analysis based on dynamic evaluation of facial curve contour

    PubMed Central

    Lin, Yi; Lin, Han; Lin, Qiuping; Zhang, Jinxin; Zhu, Ping; Lu, Yao; Zhao, Zhi; Lv, Jiahong; Lee, Mln Kyeong; Xu, Yue

    2016-01-01

    The influence of three-dimensional facial contour and dynamic evaluation decoding on factors of smile esthetics is essential for facial beauty improvement. However, the kinematic features of the facial smile contour and the contribution from the soft tissue and underlying skeleton are uncharted. Here, the cheekbone-maxilla contour and nasolabial fold were combined into a “smile contour” delineating the overall facial topography emerges prominently in smiling. We screened out the stable and unstable points on the smile contour using facial motion capture and curve fitting, before analyzing the correlation between soft tissue coordinates and hard tissue counterparts of the screened points. Our finding suggests that the mouth corner region was the most mobile area characterizing smile expression, while the other areas remained relatively stable. Therefore, the perioral area should be evaluated dynamically while the static assessment outcome of other parts of the smile contour contribute partially to their dynamic esthetics. Moreover, different from the end piece, morphologies of the zygomatic area and the superior part of the nasolabial crease were determined largely by the skeleton in rest, implying the latter can be altered by orthopedic or orthodontic correction and the former better improved by cosmetic procedures to improve the beauty of smile. PMID:26911450

  7. Multivariate curve resolution for the analysis of remotely sensed thermal infrared hyperspectral images.

    SciTech Connect

    Haaland, David Michael; Stork, Christopher Lyle; Keenan, Michael Robert

    2004-07-01

    While hyperspectral imaging systems are increasingly used in remote sensing and offer enhanced scene characterization relative to univariate and multispectral technologies, it has proven difficult in practice to extract all of the useful information from these systems due to overwhelming data volume, confounding atmospheric effects, and the limited a priori knowledge regarding the scene. The need exists for the ability to perform rapid and comprehensive data exploitation of remotely sensed hyperspectral imagery. To address this need, this paper describes the application of a fast and rigorous multivariate curve resolution (MCR) algorithm to remotely sensed thermal infrared hyperspectral images. Employing minimal a priori knowledge, notably non-negativity constraints on the extracted endmember profiles and a constant abundance constraint for the atmospheric upwelling component, it is demonstrated that MCR can successfully compensate thermal infrared hyperspectral images for atmospheric upwelling and, thereby, transmittance effects. We take a semi-synthetic approach to obtaining image data containing gas plumes by adding emission gas signals onto real hyperspectral images. MCR can accurately estimate the relative spectral absorption coefficients and thermal contrast distribution of an ammonia gas plume component added near the minimum detectable quantity.

  8. Post-Buckling Analysis of Curved Honeycomb Sandwich Panels Containing Interfacial Disbonds

    NASA Technical Reports Server (NTRS)

    Pineda, Evan J.; Bednarcyk, Brett A.; Krivanek, Thomas K.

    2016-01-01

    A numerical study on the effect of facesheet-core disbonds on the post-buckling response of curved honeycomb sandwich panels is presented herein. This work was conducted as part of the development of a damage tolerance plan for the next-generation Space Launch System heavy lift launch vehicle payload fairing. As such, the study utilized full-scale fairing barrel segments as the structure of interest. The panels were composed of carbon fiber reinforced polymer facesheets and aluminum honeycomb core. The panels were analyzed numerically using the finite element method incorporating geometric nonlinearity. In a predetermined circular region, facesheet and core nodes were detached to simulate a disbond, between the outer mold line facesheet and honeycomb core, induced via low-speed impact. Surface-to-surface contact in the disbonded region was invoked to prevent interpenetration of the facesheet and core elements and obtain realistic stresses in the core. The diameter of this disbonded region was varied and the effect of the size of the disbond on the post-buckling response was observed. Significant changes in the slope of the edge load-deflection response were used to determine the onset of global buckling and corresponding buckling load. Finally, several studies were conducted to determine the sensitivity of the numerical predictions to refinement in the finite element mesh.

  9. Dissociative Ionization of Benzene by Electron Impact

    NASA Technical Reports Server (NTRS)

    Huo, Winifred; Dateo, Christopher; Kwak, Dochan (Technical Monitor)

    2002-01-01

    We report a theoretical study of the dissociative ionization (DI) of benzene from the low-lying ionization channels. Our approach makes use of the fact that electron motion is much faster than nuclear motion and DI is treated as a two-step process. The first step is electron-impact ionization resulting in an ion with the same nuclear geometry as the neutral molecule. In the second step the nuclei relax from the initial geometry and undergo unimolecular dissociation. For the ionization process we use the improved binary-encounter dipole (iBED) model. For the unimolecular dissociation step, we study the steepest descent reaction path to the minimum of the ion potential energy surface. The path is used to analyze the probability of unimolecular dissociation and to determine the product distributions. Our analysis of the dissociation products and the thresholds of the productions are compared with the result dissociative photoionization measurements of Feng et al. The partial oscillator strengths from Feng et al. are then used in the iBED cross section calculations.

  10. Evaluation of pollutant loads from stormwater BMPs to receiving water using load frequency curves with uncertainty analysis.

    PubMed

    Park, Daeryong; Roesner, Larry A

    2012-12-15

    This study examined pollutant loads released to receiving water from a typical urban watershed in the Los Angeles (LA) Basin of California by applying a best management practice (BMP) performance model that includes uncertainty. This BMP performance model uses the k-C model and incorporates uncertainty analysis and the first-order second-moment (FOSM) method to assess the effectiveness of BMPs for removing stormwater pollutants. Uncertainties were considered for the influent event mean concentration (EMC) and the aerial removal rate constant of the k-C model. The storage treatment overflow and runoff model (STORM) was used to simulate the flow volume from watershed, the bypass flow volume and the flow volume that passes through the BMP. Detention basins and total suspended solids (TSS) were chosen as representatives of stormwater BMP and pollutant, respectively. This paper applies load frequency curves (LFCs), which replace the exceedance percentage with an exceedance frequency as an alternative to load duration curves (LDCs), to evaluate the effectiveness of BMPs. An evaluation method based on uncertainty analysis is suggested because it applies a water quality standard exceedance based on frequency and magnitude. As a result, the incorporation of uncertainty in the estimates of pollutant loads can assist stormwater managers in determining the degree of total daily maximum load (TMDL) compliance that could be expected from a given BMP in a watershed.

  11. Scaling and disorder analysis of local I-V curves from ferroelectric thin films of lead zirconate titanate.

    PubMed

    Maksymovych, Peter; Pan, Minghu; Yu, Pu; Ramesh, Ramamoorthy; Baddorf, Arthur P; Kalinin, Sergei V

    2011-06-24

    Differential analysis of current-voltage characteristics, obtained on the surface of epitaxial films of ferroelectric lead zirconate titanate (Pb(Zr(0.2)Ti(0.8))O(3)) using scanning probe microscopy, was combined with spatially resolved mapping of variations in local conductance to differentiate between candidate mechanisms of local electronic transport and the origin of disorder. Within the assumed approximations, electron transport was inferred to be determined by two mechanisms depending on the magnitude of applied bias, with the low-bias range dominated by the trap-assisted Fowler-Nordheim tunneling through the interface and the high-bias range limited by the hopping conduction through the bulk. Phenomenological analysis of the I-V curves has further revealed that the transition between the low- and high-bias regimes is manifested both in the strength of variations within the I-V curves sampled across the surface, as well as the spatial distribution of conductance. Spatial variations were concluded to originate primarily from the heterogeneity of the interfacial electronic barrier height with an additional small contribution from random changes in the tip-contact geometry.

  12. Energetics from Slow Infrared Multiphoton Dissociation of Biomolecules

    PubMed Central

    Jockusch, Rebecca A.; Paech, Kolja

    2005-01-01

    Photodissociation kinetics of the protonated pentapeptide leucine enkephalin measured using a cw CO2 laser and a Fourier-transform mass spectrometer are reported. A short induction period, corresponding to the time required to raise the internal energy of the ion population to a (dissociating) steady state, is observed. After this induction period, the dissociation data are accurately fit by first-order kinetics. A plot of the log of the unimolecular dissociation rate constant, kuni, as a function of the log of laser power is linear at low laser powers (<9 W, kuni <0.05 s−1), but tapers off at high laser power (9–33 W, kuni = 0.05–7 s−1). The entire measured dissociation curve can be accurately fit by an exponential function plus a constant. The experiment is simulated using a master equation formalism. In the model, the laser radiation is described as an energetically flat-topped distribution which is spatially uniform. This description is consistent with experimental results which indicate that ion motion within the cell averages out spatial inhomogeneities in the laser light. The model has several adjustable parameters. The effect of varying these parameters on the calculated kinetics and power dependence curves is discussed. A procedure for determining a limited range of threshold dissociation energy, Eo, which fits both the measured induction period and power dependence curves, is presented. Using this procedure, Eo of leucine enkephalin is determined to be 1.12–1.46 eV. This result is consistent with, although less precise than, values measured previously using blackbody infrared radiative dissociation. Although the blackbody dissociation results were used as a starting point to search for fits of the master equation model to experiment, these results demonstrate that it is, in principle, possible to determine a limited range of Eo from slow infrared multiphoton dissociation data alone. PMID:16467893

  13. Curved Beam Computed Tomography based Structural Rigidity Analysis of Bones with Simulated Lytic Defect: A Comparative Study with Finite Element Analysis

    PubMed Central

    Oftadeh, R.; Karimi, Z.; Villa-Camacho, J.; Tanck, E.; Verdonschot, N.; Goebel, R.; Snyder, B. D.; Hashemi, H. N.; Vaziri, A.; Nazarian, A.

    2016-01-01

    In this paper, a CT based structural rigidity analysis (CTRA) method that incorporates bone intrinsic local curvature is introduced to assess the compressive failure load of human femur with simulated lytic defects. The proposed CTRA is based on a three dimensional curved beam theory to obtain critical stresses within the human femur model. To test the proposed method, ten human cadaveric femurs with and without simulated defects were mechanically tested under axial compression to failure. Quantitative computed tomography images were acquired from the samples, and CTRA and finite element analysis were performed to obtain the failure load as well as rigidities in both straight and curved cross sections. Experimental results were compared to the results obtained from FEA and CTRA. The failure loads predicated by curved beam CTRA and FEA are in agreement with experimental results. The results also show that the proposed method is an efficient and reliable method to find both the location and magnitude of failure load. Moreover, the results show that the proposed curved CTRA outperforms the regular straight beam CTRA, which ignores the bone intrinsic curvature and can be used as a useful tool in clinical practices. PMID:27585495

  14. Curved Beam Computed Tomography based Structural Rigidity Analysis of Bones with Simulated Lytic Defect: A Comparative Study with Finite Element Analysis.

    PubMed

    Oftadeh, R; Karimi, Z; Villa-Camacho, J; Tanck, E; Verdonschot, N; Goebel, R; Snyder, B D; Hashemi, H N; Vaziri, A; Nazarian, A

    2016-01-01

    In this paper, a CT based structural rigidity analysis (CTRA) method that incorporates bone intrinsic local curvature is introduced to assess the compressive failure load of human femur with simulated lytic defects. The proposed CTRA is based on a three dimensional curved beam theory to obtain critical stresses within the human femur model. To test the proposed method, ten human cadaveric femurs with and without simulated defects were mechanically tested under axial compression to failure. Quantitative computed tomography images were acquired from the samples, and CTRA and finite element analysis were performed to obtain the failure load as well as rigidities in both straight and curved cross sections. Experimental results were compared to the results obtained from FEA and CTRA. The failure loads predicated by curved beam CTRA and FEA are in agreement with experimental results. The results also show that the proposed method is an efficient and reliable method to find both the location and magnitude of failure load. Moreover, the results show that the proposed curved CTRA outperforms the regular straight beam CTRA, which ignores the bone intrinsic curvature and can be used as a useful tool in clinical practices. PMID:27585495

  15. Curved Beam Computed Tomography based Structural Rigidity Analysis of Bones with Simulated Lytic Defect: A Comparative Study with Finite Element Analysis

    NASA Astrophysics Data System (ADS)

    Oftadeh, R.; Karimi, Z.; Villa-Camacho, J.; Tanck, E.; Verdonschot, N.; Goebel, R.; Snyder, B. D.; Hashemi, H. N.; Vaziri, A.; Nazarian, A.

    2016-09-01

    In this paper, a CT based structural rigidity analysis (CTRA) method that incorporates bone intrinsic local curvature is introduced to assess the compressive failure load of human femur with simulated lytic defects. The proposed CTRA is based on a three dimensional curved beam theory to obtain critical stresses within the human femur model. To test the proposed method, ten human cadaveric femurs with and without simulated defects were mechanically tested under axial compression to failure. Quantitative computed tomography images were acquired from the samples, and CTRA and finite element analysis were performed to obtain the failure load as well as rigidities in both straight and curved cross sections. Experimental results were compared to the results obtained from FEA and CTRA. The failure loads predicated by curved beam CTRA and FEA are in agreement with experimental results. The results also show that the proposed method is an efficient and reliable method to find both the location and magnitude of failure load. Moreover, the results show that the proposed curved CTRA outperforms the regular straight beam CTRA, which ignores the bone intrinsic curvature and can be used as a useful tool in clinical practices.

  16. Statistical signal analysis of the Phanerozoic ð13C curve: implications for Earth system evolution

    NASA Astrophysics Data System (ADS)

    Bachan, A.; Kump, L. R.; Payne, J.; Saltzman, M.; Thomas, E.

    2014-12-01

    In recent years, vast amounts of carbon isotopic data have been collected allowing the construction of the Phanerozoic δ13C curve in unprecedented detail. Our dataset comprises 8143 points spanning the last 541 m.y., with a mean spacing of 66 k.y. The average δ13C of Phanerozoic carbonate is 1 ‰ ± 2 ‰, in accordance with the canonical values measured in the past. However, the record also shows numerous, highly resolved, large (± 6 ‰) excursions whose magnitude declines through time, especially going into the late Mesozoic and Cenozoic. When the magnitude - distribution of the excursions is tabulated we find that it follows a power law: plotting the min-max differences vs. number of bins in which a particular value occurs reveals that the data fall on a semilogarithmic line with a slope of -0.23 and R2 = 0.99. The result is insensitive to outliers: smoothing the data with lowess, spline, Savitzky-Golay, and Butterworth filters yields similar results. The continuity from small variation to large perturbations, both positive and negative, suggests that, despite the numerous proposed causes for individual carbon isotopic evens, there is likely an underlying mechanism which governs the magnitude of δ13C response to perturbations. We suggest that a mechanism acting to amplify carbon cycle perturbations is the key to explaining the power-law distribution, and identify the anoxia-productivity feedback as the most likely candidate. Establishment of sulfidic conditions is accompanied by increased release of phosphate to the water column, which allows for further productivity, and thus acts as a destabilizing, positive, feedback. This feedback would act to increase carbon cycle swings irrespective of their proximal trigger. The decline in frequency of anoxic-sulfidic bottom waters in the world's oceans, and potential disappearance in the Late Mesozoic-Cenozoic, may account for a reduction in the Earth system's gain and increase in its resilience.

  17. The Impact of Tides on Transiting Planet Structure and Evolution and Light Curve Analysis.

    NASA Astrophysics Data System (ADS)

    Chabrier, Gilles

    2011-09-01

    We examine two key consequences of tidal forces on the transiting planet observed and theoretical properties. First, based on consistent calculations coupling gravothermal evolution with complete tidal equations, we revisit the viability of the tidal heating hypothesis to explain the anomalously large radius of some transiting planets. We demonstrate, both analytically and numerically, that calculations based on tidal models truncated at second order in eccentricity, as done in all previous studies, lead to severely erroneous tidal evolutions. Such truncated calculations yield characteristic timescales for dynamical evolution that can be wrong by orders of magnitude, leading accordingly to completely erroneous tidal energy dissipation rates during the planet's evolution. We demontrate that these results do not stem from uncertainties in the tidal quality factor, as often (erroneously) suggested, but from the exact calculations of the tidal equations. We show that, although tidal heating provides a substantial contribution to the planet's heat budget, this mechanism can not explain alone all the anomalously inflated planets. We examine alternative mechanisms to explain these puzzling properties. Furthermore, due to strong tidal forces, transiting planets exhibit a non-spherical shape. Such a departure from sphericity has a measurable impact on the observed transit depth and leads to a bias in the derivation of the transit radius from the light curve. As the tidally deformed planet projects its smallest cross section area during the transit, the measured effective radius is smaller than the one of the unperturbed genuine spherical planet. To correct this bias, we present analytical expressions that can easily be used to calculate the shape of observed planets (and Love number) and its impact on the transit lightcurve. These expressions enable us to convert the planet’s measured cross section into its real equilibrium radius, the one to be used when comparing

  18. The first multi-color light curve analysis of FI Lyn and new V and Rc light curve analysis for GN Boo, two W-subtype W Ursae Majoris systems

    NASA Astrophysics Data System (ADS)

    Barani, C.; Martignoni, M.; Acerbi, F.

    2015-08-01

    Here we present the first analysis of the B, V and Ic CCD light curves of the W UMa type eclipsing binary star FI Lyn obtained in the year 2009 (8 nights) and in the year 2010 (2 nights), and new CCD V and Rc light curves of the known contact eclipsing binary GN Boo obtained in 4 nights in May 2012. Our data permits us the determination of ten and six new times of minimum light respectively for FI Lyn and GN Boo and refine both the orbital periods of the systems to P = 0.3732612 days and P = 0.3016022 days. The periods of both the systems are variable. FI Lyn shows an increasing period at the rate of dP / dt 1.05 × 10-6 days yr-1 while GN Boo shows cyclic oscillations. The observed light curves are analyzed simultaneously with the Wilson-Devinney program analysis; the geometrical and photometric elements are derived. Our solutions show that FI Lyn and GN Boo belong to the W-subtype W Ursae Majoris contact binary class, consisting of a hotter, less massive primary star eclipsed at primary minimum with a primary spectral type of G1 and G8 and a companion of spectral type G3 and G4 respectively. We found, for FI Lyn a mass ratio of q = 2.58 , the degree of contact of f = 38.9 % , an orbital inclination of i = 71 ° .5 and a small temperature difference between the components of about Δ T = 150 K indicating a good thermal contact, while for GN Boo we found a mass ratio of q = 3.33 , the degree of contact of f = 24.3 % , an orbital inclination of i = 83 ° .6 and a difference between the components temperature of about Δ T = 620 K. The elements obtained from the W-D analysis are used to compute the physical parameters of the systems in order to study their evolutionary status.

  19. Dissociative Identity Disorder

    ERIC Educational Resources Information Center

    Schmidt, Tom

    2007-01-01

    Few psychological disorders in the Diagnostic Statistical Manual have generated as much controversy as Dissociative Identity Disorder (DID). For the past 35 years diagnoses of DID, previously referred to as Multiple Personality Disorder (MPD), have increased exponentially, causing various psychological researchers and clinicians to question the…

  20. Dissociation: the clinical realities.

    PubMed

    Frankel, F H

    1996-07-01

    An attempt was made by the authors of DSM-III to restrict its focus to the experimental, the observable, and the measurable. The intention was to free the nosology from the influence of unproven theories, and the philosophy was driven largely by the importance of research being able to identify diagnostic categories to facilitate the study of homogeneous groups. So it is of interest that the authors accepted dissociation-an ambiguous event linked to an explicit theoretical concept that had been introduced by Janet-as the basis for classification of clinical presentations that were formerly included under the rubric of hysteria, a similarly unclear category. Since DSM-III, there have been an increasing number of reports of dissociative experiences and dissociative identity disorder (formerly known as multiple personality disorder), but neither of these clinical presentations seems able to withstand the concern that it is dramatically influenced by environmental cues, e.g., the expectations of the therapist. Thus, a restricted phenomenological perspective does not fully appreciate the distorting potential of suggestibility and imagination on the nature of the emerging clinical picture. These factors might well have contributed to and laid the conceptual groundwork for the growth in the number of reports of dissociation.

  1. Establishment of an x-ray standard calibration curve by conventional dicentric analysis as prerequisite for accurate radiation dose assessment.

    PubMed

    Beinke, Christina; Braselmann, Herbert; Meineke, Viktor

    2010-02-01

    The dicentric assay was established to carry out cytogenetic biodosimetry after suspected radiation overexposure, including a comprehensive documentation system to record the processing of the specimen, all data, results, and stored information. As an essential prerequisite for retrospective radiation dose assessment, a dose-response curve for dicentric induction by in vitro x-ray irradiation of peripheral blood samples was produced. The accelerating potential was 240 kV (maximum photon energy: 240 keV). A total of 8,377 first-division metaphases of four healthy volunteers were analyzed after exposure to doses ranging from 0.2 to 4.0 Gy at a dose rate of 1.0 Gy min. The background level of aberrations at 0-dose was determined by the analysis of 14,522 first-division metaphases obtained from unirradiated blood samples of 10 healthy volunteers. The dose-response relationship follows a linear-quadratic equation, Y = c + alphaD + betaD, with the coefficients c = 0.0005 +/- 0.0002, alpha = 0.043 +/- 0.006, and beta = 0.063 +/- 0.004. The technical competence and the quality of the calibration curve were assessed by determination of the dose prediction accuracy in an in vitro experiment simulating whole-body exposures within a range of 0.2 to 2.0 Gy. Dose estimations were derived by scoring up to 500-1,000 metaphase spreads or more (full estimation mode) and by evaluating only 50 metaphase spreads (triage mode) per subject. The triage mode was applied by performing manifold evaluations of the full estimation data in order to test the robustness of the curve for triage purposes and to assess possible variations among the estimated doses referring to a single exposure and preparation.

  2. Not proper ROC curves as new tool for the analysis of differentially expressed genes in microarray experiments

    PubMed Central

    Parodi, Stefano; Pistoia, Vito; Muselli, Marco

    2008-01-01

    Background Most microarray experiments are carried out with the purpose of identifying genes whose expression varies in relation with specific conditions or in response to environmental stimuli. In such studies, genes showing similar mean expression values between two or more groups are considered as not differentially expressed, even if hidden subclasses with different expression values may exist. In this paper we propose a new method for identifying differentially expressed genes, based on the area between the ROC curve and the rising diagonal (ABCR). ABCR represents a more general approach than the standard area under the ROC curve (AUC), because it can identify both proper (i.e., concave) and not proper ROC curves (NPRC). In particular, NPRC may correspond to those genes that tend to escape standard selection methods. Results We assessed the performance of our method using data from a publicly available database of 4026 genes, including 14 normal B cell samples (NBC) and 20 heterogeneous lymphomas (namely: 9 follicular lymphomas and 11 chronic lymphocytic leukemias). Moreover, NBC also included two sub-classes, i.e., 6 heavily stimulated and 8 slightly or not stimulated samples. We identified 1607 differentially expressed genes with an estimated False Discovery Rate of 15%. Among them, 16 corresponded to NPRC and all escaped standard selection procedures based on AUC and t statistics. Moreover, a simple inspection to the shape of such plots allowed to identify the two subclasses in either one class in 13 cases (81%). Conclusion NPRC represent a new useful tool for the analysis of microarray data. PMID:18834513

  3. High resolution melting curve analysis as a new tool for rapid identification of canine parvovirus type 2 strains.

    PubMed

    Bingga, Gali; Liu, Zhicheng; Zhang, Jianfeng; Zhu, Yujun; Lin, Lifeng; Ding, Shuangyang; Guo, Pengju

    2014-01-01

    A high resolution melting (HRM) curve method was developed to identify canine parvovirus type 2 (CPV-2) strains by nested PCR. Two sets of primers, CPV-426F/426R and CPV-87R/87F, were designed that amplified a 52 bp and 53 bp product from the viral VP2 capsid gene. The region amplified by CPV-426F/426R included the A4062G and T4064A mutations in CPV-2a, CPV-2b and CPV-2c. The region amplified by CPV-87F/87R included the A3045T mutation in the vaccine strains of CPV-2 and CPV-2a, CPV-2b and CPV-2c. Faecal samples were obtained from 30 dogs that were CPV antigen-positive. The DNA was isolated from the faecal samples and PCR-amplified using the two sets of primers, and genotyped by HRM curve analysis. The PCR-HRM assay was able to distinguish single nucleotide polymorphisms between CPV-2a, CPV-2b and CPV-2c using CPV-426F/426R. CPV-2a was distinguished from CPV-2b and CPV-2c by differences in the melting temperature. CPV-2b and CPV-2c could be distinguished based on the shape of the melting curve after generating heteroduplexes using a CPV-2b reference sample. The vaccine strains of CPV-2 were identified using CPV-87F/87R. Conventional methods for genotyping CPV strains are labor intensive, expensive or time consuming; the present PCR-based HRM assay might be an attractive alternative.

  4. Dissociation and psychosis in dissociative identity disorder and schizophrenia.

    PubMed

    Laddis, Andreas; Dell, Paul F

    2012-01-01

    Dissociative symptoms, first-rank symptoms of schizophrenia, and delusions were assessed in 40 schizophrenia patients and 40 dissociative identity disorder (DID) patients with the Multidimensional Inventory of Dissociation (MID). Schizophrenia patients were diagnosed with the Structured Clinical Interview for the DSM-IV Axis I Disorders; DID patients were diagnosed with the Structured Clinical Interview for DSM-IV Dissociative Disorders-Revised. DID patients obtained significantly (a) higher dissociation scores; (b) higher passive-influence scores (first-rank symptoms); and (c) higher scores on scales that measure child voices, angry voices, persecutory voices, voices arguing, and voices commenting. Schizophrenia patients obtained significantly higher delusion scores than did DID patients. What is odd is that the dissociation scores of schizophrenia patients were unrelated to their reports of childhood maltreatment. Multiple regression analyses indicated that 81% of the variance in DID patients' dissociation scores was predicted by the MID's Ego-Alien Experiences Scale, whereas 92% of the variance in schizophrenia patients' dissociation scores was predicted by the MID's Voices Scale. We propose that schizophrenia patients' responses to the MID do not index the same pathology as do the responses of DID patients. We argue that neither phenomenological definitions of dissociation nor the current generation of dissociation instruments (which are uniformly phenomenological in nature) can distinguish between the dissociative phenomena of DID and what we suspect are just the dissociation-like phenomena of schizophrenia.

  5. Pathological Dissociation as Measured by the Child Dissociative Checklist

    ERIC Educational Resources Information Center

    Wherry, Jeffrey N.; Neil, Debra A.; Taylor, Tamara N.

    2009-01-01

    The component structure of the Child Dissociative Checklist was examined among abused children. A factor described as pathological dissociation emerged that was predicted by participants being male. There also were differences in pathological dissociation between groups of sexually abused and physically abused children. Replication of this factor…

  6. Fluid hydrogen at high density - Pressure dissociation

    NASA Technical Reports Server (NTRS)

    Saumon, Didier; Chabrier, Gilles

    1991-01-01

    A model for the Helmholtz free energy of fluid hydrogen at high density and high temperature is developed. This model aims at describing both pressure and temperature dissociation and ionization and bears directly on equations of state of partially ionized plasmas, as encountered in astrophysical situations and high-pressure experiments. This paper focuses on a mixture of hydrogen atoms and molecules and is devoted to the study of the phenomenon of pressure dissociation at finite temperatures. In the present model, the strong interactions are described with realistic potentials and are computed with a modified Weeks-Chandler-Andersen fluid perturbation theory that reproduces Monte Carlo simulations to better than 3 percent. Theoretical Hugoniot curves derived from the model are in excellent agreement with experimental data.

  7. A Computer Program for Calculation of Calibration Curves for Quantitative X-Ray Diffraction Analysis.

    ERIC Educational Resources Information Center

    Blanchard, Frank N.

    1980-01-01

    Describes a FORTRAN IV program written to supplement a laboratory exercise dealing with quantitative x-ray diffraction analysis of mixtures of polycrystalline phases in an introductory course in x-ray diffraction. Gives an example of the use of the program and compares calculated and observed calibration data. (Author/GS)

  8. Leptin receptor (LEPR) SNP polymorphisms in HELLP syndrome patients determined by quantitative real-time PCR and melting curve analysis

    PubMed Central

    2010-01-01

    Background Several studies have shown overexpression of leptin in microarray experiments in pre-eclampsia (PE) and in hemolysis, elevated liver enzymes, low platelets (HELLP) syndrome. We decided to study four leptin receptor (LEPR) SNP polymorphisms in HELLP syndrome patients by using quantitative real-time PCR and melting curve analysis. Methods DNA was isolated from blood samples from 83 normotensive pregnant women and 75 HELLP syndrome patients. Four SNPs, LEPR c.326A>G (K109), LEPR c.668A>G (Q223R), LEPR c.1968G>C (K656N) and LEPR c.3024A>G (S1008) were determined by quantitative real-time PCR and melting curve analysis. Investigators were blinded to clinical outcomes. Results LEPR c.326A>G, LEPR c.668A>G, LEPR c.1968G>C and LEPR c.3024A>G allele, genotype and haplotype polymorphisms were not different in HELLP syndrome patients and normotensive healthy pregnants. There were strong linkage disequilibrium (LD) between loci c.326A>G and c.6687A>G (D' = 0.974), and c.668A>G and c.1968G>C (D' = 0.934), and c.326A>G and c.1968G>C (D' = 0.885), and c.1968G>C and c.3024A>G (D' = 1.0). However, linkages of c.3024A>G with c.668A>G (D' = 0.111) and c.326A>G (D' = 0.398) were weak. The Hardy-Weinberg equilibrium was observed for all polymorphisms. However the LEPR c.326A>G AG genotype was twice more frequent and the (AG AG GG AG) haplotype was three times more frequent in HELLP syndrome patients. The introduced quantitative real-time PCR combined with melting curve analysis is a fast and reliable method for the determination of LEPR SNPs. Conclusion Although certain LEPR haplotypes are more frequent in HELLP syndrome, we conclude that there is no compelling evidence that the four studied LEPR SNP polymorphisms associated with the development of HELLP syndrome. PMID:20149225

  9. The responses of dissociative patients on the thematic apperception test.

    PubMed

    Pica, M; Beere, D; Lovinger, S; Dush, D

    2001-07-01

    This study compared the responses of dissociative inpatients and general inpatient psychiatric controls on the Thematic Apperception Test (TAT; Murray, 1943). We found the stories of dissociative participants to be characterized by a greater interpersonal distance and more trauma and dissociation responses than those of the controls. No significant differences were found regarding total number of emotional references, although references to positive emotions were almost nonexistent for the dissociative group. A post hoc analysis of the data found the testing behaviors of dissociative participants to be characterized by switching, trance states, intrainterview amnesias, and affectively loaded card rejections. Questions were raised regarding the relevancy of the findings to clinical practice and how they might explain some of the controversies surrounding the diagnosis of dissociative identity disorder (DID).

  10. Dissociative detachment relates to psychotic symptoms and personality decompensation.

    PubMed

    Allen, J G; Coyne, L; Console, D A

    1997-01-01

    Previous studies have addressed the prominence of psychotic symptoms in conjunction with multiple personality disorder (now dissociative identity disorder). The present study examines the relation between psychotic symptoms and a more pervasive form of dissociative disturbance, namely dissociative detachment. Two hundred sixty-six women in inpatient treatment for severe trauma-related disorders completed the Dissociative Experiences Scale (DES), and 102 of these patients also completed the Millon Clinical Multiaxial Inventory (MCMI-III). A factor analysis of the DES yielded two dimensions of dissociative detachment: detachment from one's own actions and detachment from the self and the environment. Each of these DES dimensions relates strongly to the thought disorder and schizotypal personality disorder scales of the MCMI-III. We propose that severe dissociative detachment, by virtue of loosening the moorings in inner and outer reality, is conducive to psychotic symptoms and personality decompensation.

  11. Dissociative ionization of biomolecules

    NASA Astrophysics Data System (ADS)

    Huo, Winifred

    2004-09-01

    Dissociative ionization (DI) by electron impact plays a role in many different applications, including low-temperature plasma processing, the study of space and astrophysical plasmas, and the study of biological damages by high-energy radiation. In the present study, our goal is to understand the health hazard to humans from exposure to radiation during an extended space flight. DI by secondary electrons can damage the DNA, either directly by causing a DNA lesion, or indirectly by producing radicals and cations that attack the DNA. The theoretical model employed makes use of the fact that electronic motion is much faster than nuclear motion, allowing DI to be treated as a two-step process. The first step is electron-impact ionization resulting in a dissociative state of the molecular ion with the same geometry as the neutral molecule. In the second step the ion relaxes from the initial geometry and undergoes unimolecular dissociation. Thus the DI cross section is given by the product of the ionization cross section and the dissociation probability. For the ionization process we use the improved binary-encounter dipole (iBED) model. For unimolecular dissociation, we use the multiconfigurational self-consistent field (MCSCF) method to determine the minimum energy pathways to possible product channels. This model has been applied to study the DI of H_2O, NH_3, and CH_4, and the results are in good agreement with experiment. The DI from the low-lying channels of benzene has also been studied and the dissociation products are compared with photoionization measurements. The DI of the DNA bases guanine and cytosine are then discussed. Of the four DNA bases, guanine has the largest ionization cross section and cytosine has the smallest. The guanine radical cation is considered to be one of the precursors to the primary, direct-type lesions formed in DNA when it is irradiated. Comparison of DI products of guanine and cytosine will be made to understand the differences in

  12. Experimental Dissociation of Methane Hydrates Through Depressurization

    NASA Astrophysics Data System (ADS)

    Borgfeldt, T.; Flemings, P. B.; Meyer, D.; You, K.

    2015-12-01

    We dissociated methane hydrates by stepwise depressurization. The initial hydrates were formed by injecting gas into a cylindrical sample of brine-saturated, coarse-grained sand at hydrate-stable conditions with the intention of reaching three-phase equilibrium. The sample was initially at 1°C with a pore pressure of 1775 psi and a salinity of 7 wt. % NaBr. The depressurization setup consisted of one pump filled with tap water attached to the confining fluid port and a second pump attached to the inlet port where the methane was injected. Depressurization was conducted over sixteen hours at a constant temperature of 1°C. The pore pressure was stepwise reduced from 1775 psi to atmospheric pressure by pulling known volumes of gas from the sample. After each extraction, we recorded the instantaneous and equilibrium pore pressure. 0.503 moles of methane were removed from the sample. The pore pressure decreased smoothly and nonlinearly with the cumulative gas withdrawn from the sample. We interpret that hydrate began to dissociate immediately with depressurization, and it continued to dissociate when the pressure decreased below the three-phase pressure for 1°C and 0 wt. % salinity. Two breaks in slope in the pressure vs. mass extracted data are bounded by smooth, nonlinear curves with differing slopes on either side. We attribute the breaks to dissociation of three zones of hydrate concentration. We created a box model to simulate the experimental behavior. For a 10% initial gas saturation (estimated from the hydrate formation experiment and based on mass conservation), an initial hydrate saturation of 55% is required to match the total methane extracted from the sample. Future experiments will be conducted over a longer timespan while monitoring hydrate dissociation with CT imaging throughout the process.

  13. Mathematical Analysis for Peristaltic Flow of Two Phase Nanofluid in a Curved Channel

    NASA Astrophysics Data System (ADS)

    Nadeem, S.; Iqra, Shahzadi

    2015-11-01

    This paper describes the theoretical analysis for peristaltic motion of water base nanofluid containing distinct types of the nanoparticles like Cu, TiO2, and Al2O3. Equations of nano fluid are modelled and simplified by constructing the suppositions of low Reynolds number as well as long wave length. The reduced equations are solved exactly. Solutions are represented through graphs. Outcomes for the velocity, temperature, pressure rise and stream lines are analyzed graphically. The work presented here is based on the fictitious values, however some other values can be tested experimentally.

  14. Label-free Chemical Imaging of Fungal Spore Walls by Raman Microscopy and Multivariate Curve Resolution Analysis

    PubMed Central

    Noothalapati, Hemanth; Sasaki, Takahiro; Kaino, Tomohiro; Kawamukai, Makoto; Ando, Masahiro; Hamaguchi, Hiro-o; Yamamoto, Tatsuyuki

    2016-01-01

    Fungal cell walls are medically important since they represent a drug target site for antifungal medication. So far there is no method to directly visualize structurally similar cell wall components such as α-glucan, β-glucan and mannan with high specificity, especially in a label-free manner. In this study, we have developed a Raman spectroscopy based molecular imaging method and combined multivariate curve resolution analysis to enable detection and visualization of multiple polysaccharide components simultaneously at the single cell level. Our results show that vegetative cell and ascus walls are made up of both α- and β-glucans while spore wall is exclusively made of α-glucan. Co-localization studies reveal the absence of mannans in ascus wall but are distributed primarily in spores. Such detailed picture is believed to further enhance our understanding of the dynamic spore wall architecture, eventually leading to advancements in drug discovery and development in the near future. PMID:27278218

  15. Detection and differentiation of in vitro-spiked bacteria by real-time PCR and melting-curve analysis.

    PubMed

    Klaschik, S; Lehmann, L E; Raadts, A; Book, M; Gebel, J; Hoeft, A; Stuber, F

    2004-02-01

    We introduce a consensus real-time PCR protocol for the detection of bacterial DNA from laboratory-prepared specimens such as water, urine, and plasma. This prototype detection system enables an exact Gram stain classification and, in particular, screening for specific species of 17 intensive care unit-relevant bacteria by means of fluorescence hybridization probes and melting-curve analysis in a one-run experiment. One strain of every species was tested at a final density of 10(6) CFU/ml. All bacteria examined except Staphylococcus aureus and Staphylococcus epidermidis could be differentiated successfully; S. aureus and S. epidermidis could only be classified as "Staphylococcus species." The hands-on time for preparation of the DNA, performance of the PCR, and evaluation of the PCR results was less than 4 h. Nevertheless, this prototype detection system requires more clinical validation.

  16. DOUBLE-STEP MULTIPLEX REAL TIME PCR WITH MELTING CURVE ANALYSIS FOR DETECTION AND DIFFERENTIATION OF MYCOBACTERIA IN SPUTUM.

    PubMed

    Kasa, Sawinee; Faksri, Kiatichai; Kaewkes, Wanlop; Lulitanond, Viraphong; Namwat, Wises

    2015-01-01

    Mycobacterium tuberculosis (M. tb) is a causative agent of tuberculosis, a worldwide public health problem. In recent years, the incidence of human mycobacterial infection due to species other than M. tb has increased. However, the lack of specific, rapid, and inexpensive methods for identification of mycobacterial species remains a pressing problem. A diagnostic test was developed for mycobacterial strain differentiation utilizing a double-step multiplex real time PCR together with melting curve analysis for identifying and distinguishing among M. tb, M. bovis BCG, other members of M. tb. complex, M. avium, and non-tuberculosis mycobacteria. The assay was tested using 167 clinical sputum samples in comparison with acid-fast staining and culturing. Using only the first step (step A) the assay achieved sensitivity and specificity of 81% and 95%, respectively. The detection limit was equivalent to 50 genome copies.

  17. First-order reversal curve diagrams of magnetic entities with mean interaction field: A physical analysis perspective

    NASA Astrophysics Data System (ADS)

    Béron, Fanny; Ménard, David; Yelon, Arthur

    2008-04-01

    A new approach to the quantitative and physical analysis of first-order reversal curve (FORC) diagrams is presented. Each hysteron in the FORC method represents a magnetic cluster. Starting with a model for a ferromagnetic, isotropic, and monodomain sphere, and adding anisotropy and domain structure, three different types of "basic hysterons" are obtained: vertical reversible and irreversible, and linear. The FORC diagrams of basic hysterons with a mean interaction field were obtained by simulation. From them, the relationships between the characteristics of the hysterons and the FORC distribution function were extracted. Different sets of hysterons can lead to the same FORC distribution function. A positive mean interaction field tends to merge the hysterons on the FORC diagram, while a negative mean interaction field introduces repulsion between them.

  18. A Latent Growth Curve Analysis of Early and Increasing Peer Victimization as Predictors of Mental Health Across Elementary School

    PubMed Central

    Rudolph, Karen D.; Troop-Gordon, Wendy; Hessel, Elenda T.; Schmidt, Jennifer D.

    2011-01-01

    Peer victimization has been implicated as a traumatic stressor that compromises children’s long-term mental health, yet a dearth of prospective research specifically demonstrates lasting effects of early victimization. This research examined whether early (2nd grade) victimization and increasing (2nd – 5th grade) victimization independently predicted depressive symptoms and aggressive behavior (overt and relational) in 5th grade. Participants included 433 children (238 girls, 195 boys). Children reported on peer victimization and depressive symptoms; teachers reported on peer victimization and aggressive behavior. Latent growth curve analysis revealed that both early and increasing victimization made unique contributions to subsequent depressive symptoms and aggressive behavior. Relational aggression was particularly likely to follow victimization in girls. PMID:21229448

  19. Statistical methods for pavement performance curve building, historical analysis, data sampling and storage. Final report, May 1997--July 1998

    SciTech Connect

    Zimmerman, K.A.; Bahulkar, A.M.

    1998-08-01

    The use of a pavement management system provides a state highway agency with the tools necessary to conduct a multi-year analysis of the maintenance and rehabilitation needs within the state based on both current needs and expected future conditions. In order to adequately predict future conditions, pavement performance models must be developed to reflect the deterioration trends of the agency`s pavements. At the time the SDDOT pavement management system was implemented in 1994, the Department developed a new condition rating system to evaluate the existing conditions of the state maintained pavements. At the same time, expert-based pavement performance models were developed to approximate the deterioration patterns of the highways based on pavement families (groupings of pavements with similar characteristics). A recommendation from that study (SD93-14) was to update the curves based on historical performance once sufficient data had been collected.

  20. Analysis of the photoelectric light curve and the orbital period variations of the binary system UU Andromedae

    NASA Astrophysics Data System (ADS)

    Manzoori, D.; Abbasvand, S.; Najafinezhad, F.

    2015-08-01

    In this work, the analysis of the photoelectric light curve (LC) in the broad-band filter (400-700 nm) for the UU And system was carried out using the PHOEBE program (vers. 0.31a). The absolute dimensions of the system are determined and its evolution is discussed. Moreover, the period changes of the system are studied using updated O-C data, which shows a cyclic change with a period of P_mod=18 yr. This was attributed to a magnetic activity cycle operating in this system. In addition to the cyclic change, a long-term secular variation due to mass transfer from the secondary to the primary component with a rate of 6.17 × 10-9 M⊙ yr-1 was also detected.

  1. DOUBLE-STEP MULTIPLEX REAL TIME PCR WITH MELTING CURVE ANALYSIS FOR DETECTION AND DIFFERENTIATION OF MYCOBACTERIA IN SPUTUM.

    PubMed

    Kasa, Sawinee; Faksri, Kiatichai; Kaewkes, Wanlop; Lulitanond, Viraphong; Namwat, Wises

    2015-01-01

    Mycobacterium tuberculosis (M. tb) is a causative agent of tuberculosis, a worldwide public health problem. In recent years, the incidence of human mycobacterial infection due to species other than M. tb has increased. However, the lack of specific, rapid, and inexpensive methods for identification of mycobacterial species remains a pressing problem. A diagnostic test was developed for mycobacterial strain differentiation utilizing a double-step multiplex real time PCR together with melting curve analysis for identifying and distinguishing among M. tb, M. bovis BCG, other members of M. tb. complex, M. avium, and non-tuberculosis mycobacteria. The assay was tested using 167 clinical sputum samples in comparison with acid-fast staining and culturing. Using only the first step (step A) the assay achieved sensitivity and specificity of 81% and 95%, respectively. The detection limit was equivalent to 50 genome copies. PMID:26513906

  2. Molecular component distribution imaging of living cells by multivariate curve resolution analysis of space-resolved Raman spectra

    NASA Astrophysics Data System (ADS)

    Ando, Masahiro; Hamaguchi, Hiro-o.

    2014-01-01

    Label-free Raman microspectroscopy combined with a multivariate curve resolution (MCR) analysis can be a powerful tool for studying a wide range of biomedical molecular systems. The MCR with the alternating least squares (MCR-ALS) technique, which retrieves the pure component spectra from complicatedly overlapped spectra, has been successfully applied to in vivo and molecular-level analysis of living cells. The principles of the MCR-ALS analysis are reviewed with a model system of titanium oxide crystal polymorphs, followed by two examples of in vivo Raman imaging studies of living yeast cells, fission yeast, and budding yeast. Due to the non-negative matrix factorization algorithm used in the MCR-ALS analysis, the spectral information derived from this technique is just ready for physical and/or chemical interpretations. The corresponding concentration profiles provide the molecular component distribution images (MCDIs) that are vitally important for elucidating life at the molecular level, as stated by Schroedinger in his famous book, "What is life?" Without any a priori knowledge about spectral profiles, time- and space-resolved Raman measurements of a dividing fission yeast cell with the MCR-ALS elucidate the dynamic changes of major cellular components (lipids, proteins, and polysaccharides) during the cell cycle. The MCR-ALS technique also resolves broadly overlapped OH stretch Raman bands of water, clearly indicating the existence of organelle-specific water structures in a living budding yeast cell.

  3. Learning curve analysis of the Collum Femoris Preserving total hip surgical technique.

    PubMed

    Van Oldenrijk, Jakob; Schafroth, Matthias U; Rijk, Elisa; Runne, Wouter C; Verheyen, Cees C P M; van Egmond, Cees; Bhandari, Mohit; Poolman, Rudolf W

    2013-01-01

    The aim of this study was to determine whether femoral neck preserving total hip arthroplasty would become less difficult and more efficient during the first 20 cases and to identify potential pitfalls during the introduction of this procedure. The difficulty and efficiency of the initial 20 procedures performed by four surgeons was prospectively determined by analysing a total of 68 video recordings using time-action analysis. This method measures the duration and efficiency of individual actions needed for a surgeon to achieve his or her goal. Afterwards, we reviewed all actions with a long duration and discussed possible causes of delay with the surgeons to identify possible pitfalls. We found a decrease of difficulty and an increase of efficiency during the first 20 cases and a more consistent execution after the initial five cases. Estimating the correct osteotomy level and stem curvature was often difficult, which resulted in a variable stem position. Radiologic analysis demonstrated a tendency for varus position and increased leg length throughout the series, even after the surgeons demonstrated technical proficiency.

  4. Simplified Acute Physiology Score II as Predictor of Mortality in Intensive Care Units: A Decision Curve Analysis

    PubMed Central

    Allyn, Jérôme; Ferdynus, Cyril; Bohrer, Michel; Dalban, Cécile; Valance, Dorothée; Allou, Nicolas

    2016-01-01

    Background End-of-life decision-making in Intensive care Units (ICUs) is difficult. The main problems encountered are the lack of a reliable prediction score for death and the fact that the opinion of patients is rarely taken into consideration. The Decision Curve Analysis (DCA) is a recent method developed to evaluate the prediction models and which takes into account the wishes of patients (or surrogates) to expose themselves to the risk of obtaining a false result. Our objective was to evaluate the clinical usefulness, with DCA, of the Simplified Acute Physiology Score II (SAPS II) to predict ICU mortality. Methods We conducted a retrospective cohort study from January 2011 to September 2015, in a medical-surgical 23-bed ICU at University Hospital. Performances of the SAPS II, a modified SAPS II (without AGE), and age to predict ICU mortality, were measured by a Receiver Operating Characteristic (ROC) analysis and DCA. Results Among the 4.370 patients admitted, 23.3% died in the ICU. Mean (standard deviation) age was 56.8 (16.7) years, and median (first-third quartile) SAPS II was 48 (34–65). Areas under ROC curves were 0.828 (0.813–0.843) for SAPS II, 0.814 (0.798–0.829) for modified SAPS II and of 0.627 (0.608–0.646) for age. DCA showed a net benefit whatever the probability threshold, especially under 0.5. Conclusion DCA shows the benefits of the SAPS II to predict ICU mortality, especially when the probability threshold is low. Complementary studies are needed to define the exact role that the SAPS II can play in end-of-life decision-making in ICUs. PMID:27741304

  5. Validation of an automatic comet assay analysis system integrating the curve fitting of combined comet intensity profiles.

    PubMed

    Dehon, G; Catoire, L; Duez, P; Bogaerts, P; Dubois, J

    2008-02-29

    In recent years, the single-cell gel electrophoresis (comet) assay has become a reference technique for the assessment of DNA fragmentation both in vitro and in vivo at the cellular level. In order to improve the throughput of genotoxicity screening, development of fully automated systems is clearly a must. This would allow us to increase processing time and to avoid subjectivity brought about by frequent manual settings required for the 'classical' analysis systems. To validate a fully automatic system developed in our laboratory, different experiments were conducted in vitro on murine P388D1 cells with increasing doses of ethyl methanesulfonate (up to 5 mM), thus covering a large range of DNA damage (up to 80% of DNA in the tail). The present study (1) validates our 'in house' fully automatic system versus a widely used semi-automatic commercial system for the image-analysis step, and versus the human eye for the image acquisition step, (2) shows that computing tail DNA a posteriori on the basis of a curve fitting concept that combines intensity profiles [G. Dehon, P. Bogaerts, P. Duez, L. Catoire, J. Dubois, Curve fitting of combined comet intensity profiles: a new global concept to quantify DNA damage by the comet assay, Chemom. Intell. Lab. Syst. 73 (2004) 235-243] gives results not significantly different from the 'classical' approach but is much more accurate and easy to undertake and (3) demonstrates that, with these increased performances, the number of comets to be scored can be reduced to a minimum of 20 comets per slide without sacrificing statistical reliability. PMID:18160335

  6. [A dissociative patient].

    PubMed

    de Jongh, A; Abkhezr, S; Broers, D L M

    2009-08-01

    A 45-year-old woman attended a centre for special dental care. Initially, it seemed that the patient suffered from an extreme form of dental anxiety. However, the fact that she displayed 'dissociations' suggested that she had a severe psychiatric disorder, in this case Dissociative Identity Disorder. The key feature of this condition is a dysfunction of the normal integrative functions of identity, memory and consciousness. In such instances it is recommended to contact a psychologist or psychiatrist and the referring care provider to consider the consequences of the psychiatric condition regarding informed consent, treatment plan and actual treatment. Because it was not likely that the patient would respond to an intervention specifically aimed to reduce anxiety in the dental setting, dental treatment under general anesthesia was the best suited option.

  7. Blast response of curved carbon/epoxy composite panels: Experimental study and finite-element analysis

    NASA Astrophysics Data System (ADS)

    Phadnis, V. A.; Kumar, P.; Shukla, A.; Roy, A.; Silberschmidt, V. V.

    2013-07-01

    Experimental and numerical studies were conducted to understand the effect of plate curvature on blast response of carbon/epoxy composite panels. A shock-tube system was utilized to impart controlled shock loading to quasi-isotropic composite panels with differing range of radii of curvatures. A 3D Digital Image Correlation (DIC) technique coupled with high-speed photography was used to obtain out-of-plane deflection and velocity, as well as in-plane strain on the back face of the panels. Macroscopic post-mortem analysis was performed to compare yielding and deformation in these panels. A dynamic computational simulation that integrates fluid-structure interaction was conducted to evaluate the panel response in general purpose finite-element software ABAQUS/Explicit. The obtained numerical results were compared to the experimental data and showed a good correlation.

  8. A steady-state equilibrium configuration in the dynamic analysis of a curved pipe conveying fluid

    NASA Astrophysics Data System (ADS)

    Jung, Duhan; Chung, Jintai

    2006-06-01

    This paper discusses a steady-state equilibrium configuration and a set of linearized equations of motion for the dynamic analysis of a semi-circular fluid-conveying pipe. Through application of the perturbation method to the equations of motion for a semi-circular pipe, new nonlinear equilibrium equations were derived and the equations of motion were linearized around the equilibrium configuration of the pipe. The equilibrium configurations obtained from the derived nonlinear equilibrium equations were compared to configurations from the linear equilibrium equations of other researchers. Additionally, the natural frequencies computed in this study were compared with the frequencies presented in a previous study. It was found that the steady-state equilibrium configuration should be determined using the proposed nonlinear equilibrium equations rather than previous linear equilibrium equations. Furthermore, it was shown that the natural frequencies computed with the proposed equilibrium equations were more accurate than the frequencies of other studies.

  9. A Global Approach to Accurate and Automatic Quantitative Analysis of NMR Spectra by Complex Least-Squares Curve Fitting

    NASA Astrophysics Data System (ADS)

    Martin, Y. L.

    The performance of quantitative analysis of 1D NMR spectra depends greatly on the choice of the NMR signal model. Complex least-squares analysis is well suited for optimizing the quantitative determination of spectra containing a limited number of signals (<30) obtained under satisfactory conditions of signal-to-noise ratio (>20). From a general point of view it is concluded, on the basis of mathematical considerations and numerical simulations, that, in the absence of truncation of the free-induction decay, complex least-squares curve fitting either in the time or in the frequency domain and linear-prediction methods are in fact nearly equivalent and give identical results. However, in the situation considered, complex least-squares analysis in the frequency domain is more flexible since it enables the quality of convergence to be appraised at every resonance position. An efficient data-processing strategy has been developed which makes use of an approximate conjugate-gradient algorithm. All spectral parameters (frequency, damping factors, amplitudes, phases, initial delay associated with intensity, and phase parameters of a baseline correction) are simultaneously managed in an integrated approach which is fully automatable. The behavior of the error as a function of the signal-to-noise ratio is theoretically estimated, and the influence of apodization is discussed. The least-squares curve fitting is theoretically proved to be the most accurate approach for quantitative analysis of 1D NMR data acquired with reasonable signal-to-noise ratio. The method enables complex spectral residuals to be sorted out. These residuals, which can be cumulated thanks to the possibility of correcting for frequency shifts and phase errors, extract systematic components, such as isotopic satellite lines, and characterize the shape and the intensity of the spectral distortion with respect to the Lorentzian model. This distortion is shown to be nearly independent of the chemical species

  10. Dissociation and psychotic symptoms.

    PubMed

    Steingard, S; Frankel, F H

    1985-08-01

    The literature on hysterical or brief reactive psychosis reflects great diversity both in clinical description and theoretical formulation. The authors describe the case of a 17-year-old girl who presented with a diagnosis of bipolar affective disorder, rapid cycling type, but who, in fact, was experiencing dissociative episodes manifested as psychotic states. The patient's successful treatment with hypnosis is described, along with the clinical and theoretical implications of the case.

  11. The Reaction of Dissociative Recombination in a Strong Light Field

    SciTech Connect

    Golubkov, M. G.; Golubkov, G. V.; Adamson, S. O.; Ryabinkin, I. G.; Apukhtina, N. V.; Dementiev, A. I.

    2008-10-22

    The DR theory of slow electrons with molecular ions in strong monochromatic light field is developed. The potential energy curves of the oxygen molecule O{sub 2}** dissociative states are calculated. Classification of all possible transitions and reaction mechanisms are presented.

  12. A unified phenomenological analysis of the experimental velocity curves in molecular motors.

    PubMed

    Ciudad, Aleix; Sancho, J M

    2008-06-14

    We present a unified phenomenological kinetic framework to analyze the experimental data of several motor proteins (either linear or rotatory). This formalism allows us to discriminate the characteristic times of most relevant subprocesses. Explicitly, internal mechanical as well as chemical times are taken into account and joined together in a full-cycle time where effusion, diffusion and chemical rates, viscoelastic friction, and overdamped motion are considered. This approach clarifies the most relevant mechanisms in a particular motor by using the available experimental data of velocity versus external load and substrate concentration. We apply our analysis to three real molecular motors for which enough experimental data are available: the bacterial flagellar motor [Yoshiyuki et al., J. Mol. Biol. 377, 1043 (2003)], conventional kinesin (kinesin-1) [Block et al., Proc. Natl. Acad. Sci. U.S.A. 100, 2351 (2003)], and a RAN polymerase [Abbondanzieril, Nature (London) 438, 460 (2003)]. Moreover, the mechanism of stalling a motor is revised and split into two different concepts (mechanical and chemical stalling) that shed light to the understanding of backstepping in kinesin-1.

  13. High-resolution melting curve analysis for genotyping of common SNP in MTHFR gene using fixed-cell suspension.

    PubMed

    Sinthuwiwat, Thivaratana; Poowasanpetch, Phanasit; Wongngamrungroj, Angsana; Promso, Somying; Auewarakul, Chirayu; Mooney, Sean; Tocharoentanaphol, Chintana

    2008-01-01

    Genetic variation in MTHFR might explain the interindividual differences in both therapeutic and toxic responses to the treatment of cancer and rheumatoid arthritis with methotrexate, and can be involved in the sensitivity of developing diseases like cancer and congenital anomalies. We investigated the common sequence variation, C677T, in the MTHFR gene in fixed-cell specimens archived after chromosomal analysis using a novel gene scanning method based on post PCR analysis of high-resolution melting curves (HRM). These fixed specimens were stored after routine chromosomal analysis for 1 year at -20 degrees C in a 3:1 methanol:acetic acid solution. The method revealed a distinct pattern between homozygous and heterozygous alleles. Sensitivity and specificity of the HRM based method were comparable to that obtained by a hybridization probe. While the success rate for genotyping of a common SNP in MTHFR was similar to the hybridization probe approach, the HRM based method was more cost-effective and had a shorter turnaround time. PMID:18725286

  14. Development of Curved-Plate Elements for the Exact Buckling Analysis of Composite Plate Assemblies Including Transverse-Shear Effects

    NASA Technical Reports Server (NTRS)

    McGowan, David M.

    1999-01-01

    The analytical formulation of curved-plate non-linear equilibrium equations including transverse-shear-deformation effects is presented. A unified set of non-linear strains that contains terms from both physical and tensorial strain measures is used. Linearized, perturbed equilibrium equations (stability equations) that describe the response of the plate just after buckling occurs are derived. These equations are then modified to allow the plate reference surface to be located a distance z(sub c) from the centroidal surface. The implementation of the new theory into the VICONOPT exact buckling and vibration analysis and optimum design computer program is described. The terms of the plate stiffness matrix using both classical plate theory (CPT) and first-order shear-deformation plate theory (SDPT) are presented. The effects of in-plane transverse and in-plane shear loads are included in the in-plane stability equations. Numerical results for several example problems with different loading states are presented. Comparisons of analyses using both physical and tensorial strain measures as well as CPT and SDPT are made. The computational effort required by the new analysis is compared to that of the analysis currently in the VICONOPT program. The effects of including terms related to in-plane transverse and in-plane shear loadings in the in-plane stability equations are also examined. Finally, results of a design-optimization study of two different cylindrical shells subject to uniform axial compression are presented.

  15. From Curves to Trees: A Tree-like Shapes Distance Using the Elastic Shape Analysis Framework.

    PubMed

    Mottini, A; Descombes, X; Besse, F

    2015-04-01

    Trees are a special type of graph that can be found in various disciplines. In the field of biomedical imaging, trees have been widely studied as they can be used to describe structures such as neurons, blood vessels and lung airways. It has been shown that the morphological characteristics of these structures can provide information on their function aiding the characterization of pathological states. Therefore, it is important to develop methods that analyze their shape and quantify differences between their structures. In this paper, we present a method for the comparison of tree-like shapes that takes into account both topological and geometrical information. This method, which is based on the Elastic Shape Analysis Framework, also computes the mean shape of a population of trees. As a first application, we have considered the comparison of axon morphology. The performance of our method has been evaluated on two sets of images. For the first set of images, we considered four different populations of neurons from different animals and brain sections from the NeuroMorpho.org open database. The second set was composed of a database of 3D confocal microscopy images of three populations of axonal trees (normal and two types of mutations) of the same type of neurons. We have calculated the inter and intra class distances between the populations and embedded the distance in a classification scheme. We have compared the performance of our method against three other state of the art algorithms, and results showed that the proposed method better distinguishes between the populations. Furthermore, we present the mean shape of each population. These shapes present a more complete picture of the morphological characteristics of each population, compared to the average value of certain predefined features.

  16. Identity and Introject in dissociative disorders.

    PubMed

    Alpher, V S

    1996-12-01

    The structural analysis of social behavior (SASB) shows promise for systematically examining identity issues in clinical populations. In this study, identity is assessed with the SASB in a sample of women with dissociative disorder (n = 25) and a nonpatient clinical contrast group (n = 25). The SASB Introject--a multivariate measure of identity--effectively differentiated the 2 samples. Despite greater self-directed hostility than the clinical contrast group, dissociative disorder patients showed lower levels of intrapsychic conflict. Implications for further research on identity and psychopathology are discussed.

  17. Asteroid phase curve analysis with the H, G 1, G 2 photometric phase function: application to the PTF survey observations

    NASA Astrophysics Data System (ADS)

    Penttilä, Antti; Cellino, Alberto; Lu, Xiaoping; Shevchenko, Vasilij G.; Muinonen, Karri

    2016-10-01

    Estimation of an asteroid's absolute magnitude H from its photometry is extremely important. The absolute magnitude relates the brightness of the asteroid to its size, if the geometric albedo is known. The shape of the phase curve can serve as a proxy for the taxonomic type of the asteroid in cases with no spectral information available [1,2].In 2012, the IAU adopted the H,G1,G2 function to replace the H,G function for phase curve analysis [3]. This new function improves the backscattering behavior of the curve with high- and low-albedo asteroids. The phase function (PF) can be applied to asteroids with multiple high-quality observations. If the number of observations is small, or their accuracy is low, problems may arise. The most apparent problem is that the parameter G or the parameters G1, G2 might be poorly estimated. The solution has been to fix to value of G or values of G1, G2 and estimate only the H. In our recent work [4], we offer a solution that can improve the current situation with the photometric fits with a small number of low-accuracy observations. We present a constrained nonlinear least-squares method for fitting the H,G1,G2 function that can improve the possible bias with low-accuracy data. Then, we revisit the two-parameter PF with new data and offer a new version, the H,G12* PF. Finally, we assess the problem with fixed G or G1, G2 parameters by introducing one-parameter models that relate to five taxonomic asteroid groups. We tie all the models together with three or two parameters, or a single parameter, with a statistical model selection procedure to select the best version for a particular data set.We have developed practical tools for the abovementioned algorithms. We apply the tools to a dataset of 8,900 asteroids with almost 500,000 photometric observations from the Palomar Transient Factory survey [5]. We report the effect of the revised H estimates on the geometric albedos in cases where WISE-mission size estimates are available.[1] D

  18. Dissociation of oxygen on Ag(100) induced by inelastic electron tunneling.

    PubMed

    Sprodowski, Carsten; Mehlhorn, Michael; Morgenstern, Karina

    2010-07-01

    Scanning tunneling microscopy (STM) is used to study the dissociation of molecular oxygen on Ag(100) induced by inelastic electron tunneling (IET) at 5 K. This dissociation is possible above 3.3 V with a yield of (3.63 ± 0.47) × 10(-9) per electron. Dissociation leads to three different types of hot atom motion: lateral motion, a cannon ball mechanism, and abstractive dissociation. Analysis of the I-t characteristics during dissociation suggests that the dissociation is proceeded by an adsorption site change. PMID:21386462

  19. MOST light-curve analysis of the γ Doradus pulsator HR 8799, showing resonances and amplitude variations

    NASA Astrophysics Data System (ADS)

    Sódor, Á.; Chené, A.-N.; De Cat, P.; Bognár, Zs.; Wright, D. J.; Marois, C.; Walker, G. A. H.; Matthews, J. M.; Kallinger, T.; Rowe, J. F.; Kuschnig, R.; Guenther, D. B.; Moffat, A. F. J.; Rucinski, S. M.; Sasselov, D.; Weiss, W. W.

    2014-08-01

    Context. The central star of the HR 8799 system is a γ Doradus-type pulsator. The system harbours four planetary-mass companions detected by direct imaging, and is a good solar system analogue. The masses of the companions are not accurately known because the estimation depends greatly on the age of the system, which is also not known with sufficient accuracy. Asteroseismic studies of the star might help to better constrain the age of HR 8799. We organized an extensive photometric and multi-site spectroscopic observing campaign to study the pulsations of the central star. Aims: The aim of the present study is to investigate the pulsation properties of HR 8799 in detail via the ultra-precise 47 d nearly continuous photometry obtained with the Microvariability and Oscillations in STars (MOST) space telescope, and to find as many independent pulsation modes as possible, which is the prerequisite for an asteroseismic age determination. Methods: We carried out Fourier analysis of the wide-band photometric time series. Results: We find that resonance and sudden amplitude changes characterize the pulsation of HR 8799. The dominant frequency is always at f1 = 1.978 d-1.Many multiples of one-ninth of the dominant frequency appear in the Fourier spectrum of the MOST data: n/9 f1, where n = {1,2,3,4,5,6,7,8,9,10,13,14,17,18}. Our analysis also reveals that many of these peaks show strong amplitude decrease and phase variations even on the 47 d time scale. The dependencies between the pulsation frequencies of HR 8799 make the planned subsequent asteroseismic analysis rather difficult. We point out some resemblance between the light curve of HR 8799 and the modulated pulsation light curves of Blazhko RR Lyrae stars. Based on data from the MOST satellite, a Canadian Space Agency mission, jointly operated by Dynacon Inc., the University of Toronto Institute for Aerospace Studies and the University of British Columbia, with the assistance of the University of Vienna.

  20. Development of the Hebrew-Multidimensional Inventory of Dissociation (H-MID): a valid and reliable measure of pathological dissociation.

    PubMed

    Somer, Eli; Dell, Paul F

    2005-01-01

    The Multidimensional Inventory of Dissociation (MID; Dell, 2004b) has 168 dissociation items and 50 validity items. The MID assesses 14 major facets of dissociation, 23 symptoms of dissociation, and has 5 validity scales. The MID operationalizes (a) the subjective/ phenomenological domain of dissociation, and (b) 23 hypothesized symptoms of dissociative identity disorder (DID). This article describes the development of a Hebrew version of the MID (H-MID). In a sample of clinical and nonclinical research participants, the H-MID had strong internal consistency, temporal stability, and strong structural, convergent, discriminant, and construct validity. In addition, mean H-MID scores demonstrated incremental validity over the Hebrew Dissociative Experiences Scale (H-DES) by predicting an additional 17% of the variance in weighted trauma scores on the Traumatic Experiences Questionnaire (TEQ). Factor analysis of the H-MID extracted a single factor: dissociation. Both the MID and the subjective/phenomenological concept of pathological dissociation appear to have applicability not only in North America, but also in a heterogeneous Middle Eastern culture.

  1. Functional MRI Representational Similarity Analysis Reveals a Dissociation between Discriminative and Relative Location Information in the Human Visual System.

    PubMed

    Roth, Zvi N

    2016-01-01

    Neural responses in visual cortex are governed by a topographic mapping from retinal locations to cortical responses. Moreover, at the voxel population level early visual cortex (EVC) activity enables accurate decoding of stimuli locations. However, in many cases information enabling one to discriminate between locations (i.e., discriminative information) may be less relevant than information regarding the relative location of two objects (i.e., relative information). For example, when planning to grab a cup, determining whether the cup is located at the same retinal location as the hand is hardly relevant, whereas the location of the cup relative to the hand is crucial for performing the action. We have previously used multivariate pattern analysis techniques to measure discriminative location information, and found the highest levels in EVC, in line with other studies. Here we show, using representational similarity analysis, that availability of discriminative information in fMRI activation patterns does not entail availability of relative information. Specifically, we find that relative location information can be reliably extracted from activity patterns in posterior intraparietal sulcus (pIPS), but not from EVC, where we find the spatial representation to be warped. We further show that this variability in relative information levels between regions can be explained by a computational model based on an array of receptive fields. Moreover, when the model's receptive fields are extended to include inhibitory surround regions, the model can account for the spatial warping in EVC. These results demonstrate how size and shape properties of receptive fields in human visual cortex contribute to the transformation of discriminative spatial representations into relative spatial representations along the visual stream.

  2. Functional MRI Representational Similarity Analysis Reveals a Dissociation between Discriminative and Relative Location Information in the Human Visual System

    PubMed Central

    Roth, Zvi N.

    2016-01-01

    Neural responses in visual cortex are governed by a topographic mapping from retinal locations to cortical responses. Moreover, at the voxel population level early visual cortex (EVC) activity enables accurate decoding of stimuli locations. However, in many cases information enabling one to discriminate between locations (i.e., discriminative information) may be less relevant than information regarding the relative location of two objects (i.e., relative information). For example, when planning to grab a cup, determining whether the cup is located at the same retinal location as the hand is hardly relevant, whereas the location of the cup relative to the hand is crucial for performing the action. We have previously used multivariate pattern analysis techniques to measure discriminative location information, and found the highest levels in EVC, in line with other studies. Here we show, using representational similarity analysis, that availability of discriminative information in fMRI activation patterns does not entail availability of relative information. Specifically, we find that relative location information can be reliably extracted from activity patterns in posterior intraparietal sulcus (pIPS), but not from EVC, where we find the spatial representation to be warped. We further show that this variability in relative information levels between regions can be explained by a computational model based on an array of receptive fields. Moreover, when the model's receptive fields are extended to include inhibitory surround regions, the model can account for the spatial warping in EVC. These results demonstrate how size and shape properties of receptive fields in human visual cortex contribute to the transformation of discriminative spatial representations into relative spatial representations along the visual stream. PMID:27242455

  3. Recurrent dissociative fugue.

    PubMed

    Mamarde, Abhishek; Navkhare, Praveen; Singam, Amrita; Kanoje, Akash

    2013-10-01

    Dissociative fugue is a rarely reported diagnostic entity. It is one of the least understood and yet clinically one of the most fascinating disorders in mental health. Here, we describe a case of fugue in a 32-year-old man who was brought to mental hospital with complete loss of memory for events pertaining to identity of self. This case illustrates the nature of presentation in hospital setting like mental hospital and effort taken to reintegrate his identity and reunite with his family. PMID:24379504

  4. Recurrent dissociative fugue.

    PubMed

    Mamarde, Abhishek; Navkhare, Praveen; Singam, Amrita; Kanoje, Akash

    2013-10-01

    Dissociative fugue is a rarely reported diagnostic entity. It is one of the least understood and yet clinically one of the most fascinating disorders in mental health. Here, we describe a case of fugue in a 32-year-old man who was brought to mental hospital with complete loss of memory for events pertaining to identity of self. This case illustrates the nature of presentation in hospital setting like mental hospital and effort taken to reintegrate his identity and reunite with his family.

  5. Recurrent Dissociative Fugue

    PubMed Central

    Mamarde, Abhishek; Navkhare, Praveen; Singam, Amrita; Kanoje, Akash

    2013-01-01

    Dissociative fugue is a rarely reported diagnostic entity. It is one of the least understood and yet clinically one of the most fascinating disorders in mental health. Here, we describe a case of fugue in a 32-year-old man who was brought to mental hospital with complete loss of memory for events pertaining to identity of self. This case illustrates the nature of presentation in hospital setting like mental hospital and effort taken to reintegrate his identity and reunite with his family. PMID:24379504

  6. Dissociated multi-unit activity and local field potentials: a theory inspired analysis of a motor decision task.

    PubMed

    Mattia, Maurizio; Ferraina, Stefano; Del Giudice, Paolo

    2010-09-01

    Local field potentials (LFP) and multi-unit activity (MUA) recorded in vivo are known to convey different information about the underlying neural activity. Here we extend and support the idea that single-electrode LFP-MUA task-related modulations can shed light on the involved large-scale, multi-modular neural dynamics. We first illustrate a theoretical scheme and associated simulation evidence, proposing that in a multi-modular neural architecture local and distributed dynamic properties can be extracted from the local spiking activity of one pool of neurons in the network. From this new perspective, the spectral features of the field potentials reflect the time structure of the ongoing fluctuations of the probed local neuronal pool on a wide frequency range. We then report results obtained recording from the dorsal premotor (PMd) cortex of monkeys performing a countermanding task, in which a reaching movement is performed, unless a visual stop signal is presented. We find that the LFP and MUA spectral components on a wide frequency band (3-2000 Hz) are very differently modulated in time for successful reaching, successful and wrong stop trials, suggesting an interplay of local and distributed components of the underlying neural activity in different periods of the trials and for different behavioural outcomes. Besides, the MUA spectral power is shown to possess a time-dependent structure, which we suggest could help in understanding the successive involvement of different local neuronal populations. Finally, we compare signals recorded from PMd and dorso-lateral prefrontal (PFCd) cortex in the same experiment, and speculate that the comparative time-dependent spectral analysis of LFP and MUA can help reveal patterns of functional connectivity in the brain.

  7. THE DISSOCIATIVE TURN IN PSYCHOANALYSIS.

    PubMed

    Itzkowitz, Sheldon

    2015-06-01

    In his response to the Roundtable Discussions on what is effective in psychoanalytic psychotherapy, the author focuses on the renewed interest in the concept of dissociation that began to emerge toward the end of the 20th century. A contemporary psychoanalytic position informed by the impact of developmental trauma has led to an understanding of and interest in the dissociative mind. The actuality of trauma during infancy and early childhood is recognized as a key factor leading to the emergence of dissociative processes, the potential dissociative structuring of the mind, and mind being characterized by multiple, discontinuous, centers of consciousness. The therapeutic goal in the psychoanalytic work with fragmented patients is to establish communication and understanding between the dissociated self-states. The author offers two brief clinical examples of working with dissociated self-states.

  8. Baseline Dissociation and Prospective Success in Special Forces Assessment and Selection

    PubMed Central

    Morgan, Charles A.; Southwick, Steven M.; Hazliett, Gary; Dial-Ward, Mike

    2008-01-01

    state symptoms of dissociation in response to a specified stressor.14 Subjects were instructed to complete the CADSS using the week previous to enrollment in the course as their reference point. Subjects were instructed to inform the research team (orally and in writing) if during the previous week they had experienced any traumatic or highly stressful events. We did not include the clinician-observer component of the CADSS given the low intercorrelation coefficients for this component. After completing the CADSS, participants commenced participation in SFAS. Data analysis In order to test the hypothesis that symptoms of dissociation would be significantly related to success or failure in SFAS, the following variables were created: total CADSS scores (the sum of individual CADSS items); classification scores indicating whether or not subjects reported symptoms of dissociation at baseline (1=yes; 0=no); and two additional classification scores designed to classify subjects in a binary fashion based on whether or not their CADSS total score was greater than, at, or below a specified value (less than 5; equal to, or greater than, 5; less than 11; equal to or greater than 11). These classification cut-off points were selected based on the distribution of responses from subjects in this study and on the mean pre-stress CADSS dissociation scores noted in our previous studies.15 Chi-squared analyses were performed to test whether subjects endorsing baseline symptoms of dissociation (any, greater than 5 points, greater than 11 points) were more likely to fail SFAS compared to peers who did not report such symptoms. Receiver operator characteristics (ROC) curves ROC curves were created by using the CADSS baseline total score (the test variable) in order to predict outcome in the SFAS program (the state variable, where 1= failed SFAS). ROC graphs were created for the group as a whole and for the sub-group of subjects whose CADSS score was 1 or greater. For both ROC graphs, the

  9. Dissociative excitation study of iron pentacarbonyl molecule

    NASA Astrophysics Data System (ADS)

    Ribar, Anita; Danko, Marián; Országh, Juraj; Ferreira da Silva, Filipe; Utke, Ivo; Matejčík, Štefan

    2015-04-01

    The processes of dissociative excitation (DE) and dissociative ionisation with excitation (DIE) of iron pentacarbonyl, Fe(CO)5, have been studied using a crossed electron-molecule beam experimental apparatus (Electron Induced Fluorescence Apparatus, EIFA). Using EIFA we were able to record the emission spectrum of the molecule in the UV-VIS range, as well as the photon efficiency curves initiated by electron impact. The emission spectrum of Fe(CO)5 initiated by impact of 50 eV electrons was recorded in the spectral range between 200 nm and 470 nm. It shows a high density of emission lines and bands (mainly iron lines and carbonyl bands). Additionally, we have measured photon efficiency curves (PECs) as a function of the electron impact energy for several lines and bands. On the basis of the PECs we have discussed the reaction mechanism and the energetics of the reactions associated with the DE and DIE processes. Contribution to the Topical Issue "Elementary Processes with Atoms and Molecules in Isolated and Aggregated States", edited by Friedrich Aumayr, Bratislav Marinkovic, Štefan Matejčík, John Tanis and Kurt H. Becker.

  10. Dissociative state and competence.

    PubMed

    Lin, Yu-Ju; Hsieh, Ming-Hsien; Liu, Shi-Kai

    2007-10-01

    This report presents the results of forensic evaluation of the civil competence of a case of alleged dissociative identity disorder (DID) and discusses whether such dissociative states substantially jeopardize civil competence. A 40-year-old woman claimed that she had had many personalities since her college days. From the age of 37 to 40, she shopped excessively, which left her with millions of dollars of debt. She ascribed her shopping to a certain identity state, over which she had no control. (In this article, we use the term identity state to replace personality as an objective description of a mental state.) She thus raised the petition of civil incompetence. During the forensic evaluation, it was found that the identity states were relatively stable and mutually aware of each other. The switch into another identity state was sometimes under voluntary control. The subject showed consistency and continuity in behavioral patterns across the different identity states, and no matter which identity state she was in, there was no evidence of impairment in her factual knowledge of social situations and her capacity for managing personal affairs. We hence concluded that she was civilly competent despite the claimed DID. Considering that the existence and diagnosis of DID are still under dispute and a diagnosis of DID alone is not sufficient to interdict a persons civil right, important clinical and forensic issues remain to be answered.

  11. Dissociative Electron Attachment

    NASA Astrophysics Data System (ADS)

    Arreola, Esmeralda; Esmeralda Arreola Collaboration; Leigh Hargreaves Collaboration

    Since the pioneering work of Boudiaffa et al., it has been understood that electrons, even with energies near or below the ionization threshold, are capable of initiating strand-breaks in human DNA. This discovery raised important questions for cancer treatments, since sub-ionizing electrons are known to be the most copiously produced secondary product of radiation therapy. But even to date these factors are largely excluded from dosimetry calculations. This lack of inclusion is, at least in part, certainly due to the dearth of fundamental data describing low-energy electron interactions with nucleotide molecules that form the basis of DNA. Understanding of how such slow electrons are able to damage DNA remains incomplete, but the strongly peaked nature of Boudiaffa et al.'s data gives strong hints at resonantly driven collision processes. DNA damage is therefore most likely driven by ``dissociative electron attachment'' (DEA). DEA is a rather complicated process to model due to the coupling of electronic and nuclear degrees of freedom in the molecule. At the California State University Fullerton, we are currently commissioning a new spectrometer to study dissociation channels, reaction rates and orientation effects in DEA collisions between slow electrons and nucleotide molecules. At the meeting we will present design parameters and commissioning data for this new apparatus.

  12. Analysis of the Activation and Heterolytic Dissociation of H2 by Frustrated Lewis Pairs: NH3/BX3 (X = H, F, and Cl)

    SciTech Connect

    Camaioni, Donald M.; Ginovska-Pangovska, Bojana; Schenter, Gregory K.; Kathmann, Shawn M.; Autrey, Thomas

    2012-07-05

    We present results of our computational study aimed at understanding the mechanism of H2 activation and heterolytic dissociation by 'frustrated' Lewis pairs (FLPs). We studied the pairs of ammonia (NH3) with BH3, BF3, and most extensively, BCl3. While these pairs are capable of forming a strong dative bond, electronic structure theories make it possible to explore the potential surface in regions away from the dative complex relevant to H2 activation by frustrated Lewis pairs. We analyzed in great detail the changes that occur along the minimum energy path between the FLP and the product ion pair complex. For X = Cl, the mechanism involves a precursor complex, H3N-H2-BCl3, with a B-H-H angle of {approx}80{sup o} and nearly linear N-H-H angle. At the transition state (TS), the H2 bond is weakened but not broken, and the BCl3 moiety has undergone significant pyramidal distortion. As such, the FLP is prepared to accept the incipient proton and hydride ion on the product-side. The interaction energy of the H2 with the acid/base pair and the different contributions for the precursor and TS complex from an energy decomposition analysis expose the dominant factors affecting the reactivity. We find that structural reorganization of precursor complex plays a significant role in the 'activation' and that charge-transfer interactions are the dominant stabilizing force in the activated complex. The electric field clearly has a role in polarizing H2, but its contribution to the overall interaction energy seems to be smaller. Our detailed study of the nature of the bonding and the different types of interaction between the prototypical Lewis pair and H2 provides insight into the important components that should be taken into account when designing related systems to activate hydrogen.

  13. Dissociation Behavior of a TEMPO-Active Ester Cross-Linker for Peptide Structure Analysis by Free Radical Initiated Peptide Sequencing (FRIPS) in Negative ESI-MS

    NASA Astrophysics Data System (ADS)

    Hage, Christoph; Ihling, Christian H.; Götze, Michael; Schäfer, Mathias; Sinz, Andrea

    2016-07-01

    We have synthesized a homobifunctional amine-reactive cross-linking reagent, containing a TEMPO (2,2,6,6-tetramethylpiperidine-1-oxy) and a benzyl group (Bz), termed TEMPO-Bz-linker, to derive three-dimensional structural information of proteins. The aim for designing this novel cross-linker was to facilitate the mass spectrometric analysis of cross-linked products by free radical initiated peptide sequencing (FRIPS). In an initial study, we had investigated the fragmentation behavior of TEMPO-Bz-derivatized peptides upon collision activation in (+)-electrospray ionization collision-induced dissociation tandem mass spectrometry (ESI-CID-MS/MS) experiments. In addition to the homolytic NO-C bond cleavage FRIPS pathway delivering the desired odd-electron product ions, an alternative heterolytic NO-C bond cleavage, resulting in even-electron product ions mechanism was found to be relevant. The latter fragmentation route clearly depends on the protonation of the TEMPO-Bz-moiety itself, which motivated us to conduct (-)-ESI-MS, CID-MS/MS, and MS3 experiments of TEMPO-Bz-cross-linked peptides to further clarify the fragmentation behavior of TEMPO-Bz-peptide molecular ions. We show that the TEMPO-Bz-linker is highly beneficial for conducting FRIPS in negative ionization mode as the desired homolytic cleavage of the NO-C bond is the major fragmentation pathway. Based on characteristic fragments, the isomeric amino acids leucine and isoleucine could be discriminated. Interestingly, we observed pronounced amino acid side chain losses in cross-linked peptides if the cross-linked peptides contain a high number of acidic amino acids.

  14. A meta-analysis of education effects on chronic disease: the causal dynamics of the Population Education Transition Curve.

    PubMed

    Smith, William C; Anderson, Emily; Salinas, Daniel; Horvatek, Renata; Baker, David P

    2015-02-01

    As the Epidemiological Transition progresses worldwide, chronic diseases account for the majority of deaths in developed countries and a rising proportion in developing countries indicating a new global pattern of mortality and health challenges into the future. Attainment of formal education is widely reported to have a negative gradient with risk factors and onset of chronic disease, yet there has not been a formal assessment of this research. A random-effects meta-analysis finds that across 414 published effects more education significantly reduces the likelihood of chronic disease, except for neoplastic diseases with substantial genetic causes. Some studies, however, report null effects and other research on infectious disease report positive education gradients. Instead of assuming these contradictory results are spurious, it is suggested that they are part of a predictable systemic interaction between multiple mediating effects of education and the Epidemiological Transition stage of the population; and thus represent one case of the Population Education Transition Curve modeling changes in the association between education and health as dependent on population context.

  15. Galactoside-proton symport in a lacYUN mutant of Escherichia coli investigated by analysis of transport progress curves.

    PubMed Central

    Page, M G

    1987-01-01

    The kinetics of galactoside-proton symport catalysed by a wild-type strain and one carrying a mutation, previously reported to cause uncoupling of the symport reaction, have been examined. The mutation does not affect the stoichiometry during the initial period of uptake, when the internal concentration of galactoside is low, but it does result in much greater competition from the galactoside as it is accumulated. Simple methods for the analysis of the uptake progress curves have been developed and used to estimate the initial rate of uptake and affinity for internal galactoside. The maximum rate of uptake is decreased by a factor of 2 at most whereas the affinity for internal galactoside is increased up to 50-fold by the mutation. The pH-dependence of the galactoside efflux reaction is changed in a manner which suggests that the defect is in the interaction between proton-binding and galactoside-binding sites rather than in the structure of either site. PMID:3036093

  16. Pulse wave analysis in a 180-degree curved artery model: Implications under physiological and non-physiological inflows

    NASA Astrophysics Data System (ADS)

    Bulusu, Kartik V.; Plesniak, Michael W.

    2013-11-01

    Systolic and diastolic blood pressures, pulse pressures, and left ventricular hypertrophy contribute to cardiovascular risks. Increase of arterial stiffness due to aging and hypertension is an important factor in cardiovascular, chronic kidney and end-stage-renal-diseases. Pulse wave analysis (PWA) based on arterial pressure wave characteristics, is well established in clinical practice for evaluation of arterial distensibility and hypertension. The objective of our exploratory study in a rigid 180-degree curved artery model was to evaluate arterial pressure waveforms. Bend upstream conditions were measured using a two-component, two-dimensional, particle image velocimeter (2C-2D PIV). An ultrasonic transit-time flow meter and a catheter with a MEMS-based solid state pressure sensor, capable of measuring up to 20 harmonics of the observed pressure waveform, monitored flow conditions downstream of the bend. Our novel continuous wavelet transform algorithm (PIVlet 1.2), in addition to detecting coherent secondary flow structures is used to evaluate arterial pulse wave characteristics subjected to physiological and non-physiological inflows. Results of this study will elucidate the utility of wavelet transforms in arterial function evaluation and pulse wave speed. Supported by NSF Grant No. CBET- 0828903 and GW Center for Biomimetics and Bioinspired Engineering.

  17. Validation of Kepler's Multiple Planet Candidates. III. Light Curve Analysis and Announcement of Hundreds of New Multi-planet Systems

    NASA Astrophysics Data System (ADS)

    Rowe, Jason F.; Bryson, Stephen T.; Marcy, Geoffrey W.; Lissauer, Jack J.; Jontof-Hutter, Daniel; Mullally, Fergal; Gilliland, Ronald L.; Issacson, Howard; Ford, Eric; Howell, Steve B.; Borucki, William J.; Haas, Michael; Huber, Daniel; Steffen, Jason H.; Thompson, Susan E.; Quintana, Elisa; Barclay, Thomas; Still, Martin; Fortney, Jonathan; Gautier, T. N., III; Hunter, Roger; Caldwell, Douglas A.; Ciardi, David R.; Devore, Edna; Cochran, William; Jenkins, Jon; Agol, Eric; Carter, Joshua A.; Geary, John

    2014-03-01

    The Kepler mission has discovered more than 2500 exoplanet candidates in the first two years of spacecraft data, with approximately 40% of those in candidate multi-planet systems. The high rate of multiplicity combined with the low rate of identified false positives indicates that the multiplanet systems contain very few false positive signals due to other systems not gravitationally bound to the target star. False positives in the multi-planet systems are identified and removed, leaving behind a residual population of candidate multi-planet transiting systems expected to have a false positive rate less than 1%. We present a sample of 340 planetary systems that contain 851 planets that are validated to substantially better than the 99% confidence level; the vast majority of these have not been previously verified as planets. We expect ~two unidentified false positives making our sample of planet very reliable. We present fundamental planetary properties of our sample based on a comprehensive analysis of Kepler light curves, ground-based spectroscopy, and high-resolution imaging. Since we do not require spectroscopy or high-resolution imaging for validation, some of our derived parameters for a planetary system may be systematically incorrect due to dilution from light due to additional stars in the photometric aperture. Nonetheless, our result nearly doubles the number verified exoplanets.

  18. Latent growth curve analysis of fear during a speech task before and after treatment for social phobia.

    PubMed

    Price, Matthew; Anderson, Page L

    2011-11-01

    Models of social phobia highlight the importance of anticipatory anxiety in the experience of fear during a social situation. Anticipatory anxiety has been shown to be highly correlated with performance anxiety for a variety of social situations. A few studies show that average ratings of anxiety during the anticipation and performance phases of a social situation decline following treatment. Evidence also suggests that the point of confrontation with the feared stimulus is the peak level of fear. No study to date has evaluated the pattern of anxious responding across the anticipation, confrontation, and performance phases before and after treatment, which is the focus of the current study. Socially phobic individuals (N = 51) completed a behavioral avoidance task before and after two types of manualized cognitive behavioral therapy, and gave ratings of fear during the anticipation and performance phases. Results from latent growth curve analysis were the same for the two treatments and suggested that before treatment, anxiety sharply increased during the anticipation phase, was highly elevated at the confrontation, and gradually increased during the performance phase. After treatment, anxiety increased during the anticipation phase, although at a much slower rate than at pretreatment, peaked at confrontation, and declined during the performance phase. The findings suggest that anticipatory experiences are critical to the experience of fear for public speaking and should be incorporated into exposures. PMID:21907972

  19. Validation of Kepler's multiple planet candidates. III. Light curve analysis and announcement of hundreds of new multi-planet systems

    SciTech Connect

    Rowe, Jason F.; Bryson, Stephen T.; Lissauer, Jack J.; Jontof-Hutter, Daniel; Mullally, Fergal; Howell, Steve B.; Borucki, William J.; Haas, Michael; Huber, Daniel; Thompson, Susan E.; Quintana, Elisa; Barclay, Thomas; Still, Martin; Marcy, Geoffrey W.; Issacson, Howard; Gilliland, Ronald L.; Ford, Eric; Steffen, Jason H.; Gautier, T. N. III; and others

    2014-03-20

    The Kepler mission has discovered more than 2500 exoplanet candidates in the first two years of spacecraft data, with approximately 40% of those in candidate multi-planet systems. The high rate of multiplicity combined with the low rate of identified false positives indicates that the multiplanet systems contain very few false positive signals due to other systems not gravitationally bound to the target star. False positives in the multi-planet systems are identified and removed, leaving behind a residual population of candidate multi-planet transiting systems expected to have a false positive rate less than 1%. We present a sample of 340 planetary systems that contain 851 planets that are validated to substantially better than the 99% confidence level; the vast majority of these have not been previously verified as planets. We expect ∼two unidentified false positives making our sample of planet very reliable. We present fundamental planetary properties of our sample based on a comprehensive analysis of Kepler light curves, ground-based spectroscopy, and high-resolution imaging. Since we do not require spectroscopy or high-resolution imaging for validation, some of our derived parameters for a planetary system may be systematically incorrect due to dilution from light due to additional stars in the photometric aperture. Nonetheless, our result nearly doubles the number verified exoplanets.

  20. Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein.

    PubMed

    Kanematsu, Yusuke; Kamikubo, Hironari; Kataoka, Mikio; Tachikawa, Masanori

    2016-01-01

    Photoactive yellow protein (PYP) has a characteristic hydrogen bond (H bond) between p-coumaric acid chromophore and Glu46, whose OH bond length has been observed to be 1.21 Å by the neutron diffraction technique [Proc. Natl. Acad. Sci. 106, 440-4]. Although it has been expected that such a drastic elongation of the OH bond could be caused by the quantum effect of the hydrogen nucleus, previous theoretical computations including the nuclear quantum effect have so far underestimated the bond length by more than 0.07 Å. To elucidate the origin of the difference, we performed a vibrational analysis of the H bond on potential energy curve with O…O distance of 2.47 Å on the equilibrium structure, and that with O…O distance of 2.56 Å on the experimental crystal structure. While the vibrationally averaged OH bond length for equilibrium structure was underestimated, the corresponding value for crystal structure was in reasonable agreement with the corresponding experimental values. The elongation of the O…O distance by the quantum mechanical or thermal fluctuation would be indispensable for the formation of a low-barrier hydrogen bond in PYP.

  1. Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein.

    PubMed

    Kanematsu, Yusuke; Kamikubo, Hironari; Kataoka, Mikio; Tachikawa, Masanori

    2016-01-01

    Photoactive yellow protein (PYP) has a characteristic hydrogen bond (H bond) between p-coumaric acid chromophore and Glu46, whose OH bond length has been observed to be 1.21 Å by the neutron diffraction technique [Proc. Natl. Acad. Sci. 106, 440-4]. Although it has been expected that such a drastic elongation of the OH bond could be caused by the quantum effect of the hydrogen nucleus, previous theoretical computations including the nuclear quantum effect have so far underestimated the bond length by more than 0.07 Å. To elucidate the origin of the difference, we performed a vibrational analysis of the H bond on potential energy curve with O…O distance of 2.47 Å on the equilibrium structure, and that with O…O distance of 2.56 Å on the experimental crystal structure. While the vibrationally averaged OH bond length for equilibrium structure was underestimated, the corresponding value for crystal structure was in reasonable agreement with the corresponding experimental values. The elongation of the O…O distance by the quantum mechanical or thermal fluctuation would be indispensable for the formation of a low-barrier hydrogen bond in PYP. PMID:27274362

  2. A biometric latent curve analysis of memory decline in older men of the NAS-NRC twin registry.

    PubMed

    McArdle, John J; Plassman, Brenda L

    2009-09-01

    Previous research has shown cognitive abilities to have different biometric patterns of age-changes. We examined the variation in episodic memory (word recall task) for over 6,000 twin pairs who were initially aged 59-75, and were subsequently re-assessed up to three more times over 12 years. In cross-sectional analyses, variation in the number of words recalled independent of age was explained largely by non-shared influences (65-72%), with clear additive genetic influences (12-32%), and marginal shared family influences (1-18%). The longitudinal phenotypic analysis of the word recall task showed systematic linear declines over age, but several nonlinear models with more dramatic changes at later ages, improved the overall fit. A two-part spline model for the longitudinal twin data with an optimal turning point at age 74 led to: (a) a separation of non-shared environmental influences and transient measurement error (~50%); (b) strong additive genetic components of this latent curve (~44% at age 60) with increases (over 50%) up to age 74, but with no additional genetic variation after age 74; (c) the smaller influences of shared family environment (~15% at age 74) were constant over all ages; (d) non-shared effects play an important role over most of the life-span but diminish after age 74.

  3. Mechanisms of peptide fragmentation from time- and energy-resolved surface-induced dissociation studies: Dissociation of angiotensin analogs

    NASA Astrophysics Data System (ADS)

    Laskin, Julia; Bailey, Thomas H.; Futrell, Jean H.

    2006-03-01

    Energetics and mechanism of dissociation of singly protonated angiotensin III (RVYIHPF) and its analogs RVYIFPF, RVYIYPF, RVYIHAF and RVYIHDF was studied using surface-induced dissociation (SID) in a Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS) specially configured for studying ion activation by collisions with surfaces. The energetics and dynamics of peptide fragmentation were deduced by modeling the time- and energy-resolved survival curves for each precursor ion using an RRKM-based approach developed in our laboratory. Fragmentation mechanisms were inferred from comparison of time- and energy-resolved fragmentation efficiency curves (TFECs) of different fragment ions followed by RRKM modeling of dissociation of angiotensin III into six major families of fragment ions. Detailed modeling demonstrated that dissociation of these peptides is dominated by loss of ammonia from the precursor ion and characterized by a high-energy barrier of 1.6 eV. Loss of NH3 and subsequent rearrangement of the MH+-NH3 ion results in proton mobilization and release of ca. 30 kcal/mol into internal excitation of the MH+-NH3 ion. The resulting highly excited ion accesses a variety of non-specific dissociation pathways with very high rate constants. Fast fragmentation of excited MH+-NH3 ion forms a variety of abundant bn-NH3 and an-NH3 fragment ions. Abundant XH and HX internal fragments are also formed, reflecting the stability of histidine-containing diketopiperazine structures.

  4. Rapid detection and non-subjective characterisation of infectious bronchitis virus isolates using high-resolution melt curve analysis and a mathematical model.

    PubMed

    Hewson, Kylie; Noormohammadi, Amir H; Devlin, Joanne M; Mardani, Karim; Ignjatovic, Jagoda

    2009-01-01

    Infectious bronchitis virus (IBV) is a coronavirus that causes upper respiratory, renal and/or reproductive diseases with high morbidity in poultry. Classification of IBV is important for implementation of vaccination strategies to control the disease in commercial poultry. Currently, the lengthy process of sequence analysis of the IBV S1 gene is considered the gold standard for IBV strain identification, with a high nucleotide identity (e.g. > or =95%) indicating related strains. However, this gene has a high propensity to mutate and/or undergo recombination, and alone it may not be reliable for strain identification. A real-time polymerase chain reaction (RT-PCR) combined with high-resolution melt (HRM) curve analysis was developed based on the 3'UTR of IBV for rapid detection and classification of IBV from commercial poultry. HRM curves generated from 230 to 435-bp PCR products of several IBV strains were subjected to further analysis using a mathematical model also developed during this study. It was shown that a combination of HRM curve analysis and the mathematical model could reliably group 189 out of 190 comparisons of pairs of IBV strains in accordance with their 3'UTR and S1 gene identities. The newly developed RT-PCR/HRM curve analysis model could detect and rapidly identify novel and vaccine-related IBV strains, as confirmed by S1 gene and 3'UTR nucleotide sequences. This model is a rapid, reliable, accurate and non-subjective system for detection of IBVs in poultry flocks.

  5. Langevin Equation on Fractal Curves

    NASA Astrophysics Data System (ADS)

    Satin, Seema; Gangal, A. D.

    2016-07-01

    We analyze random motion of a particle on a fractal curve, using Langevin approach. This involves defining a new velocity in terms of mass of the fractal curve, as defined in recent work. The geometry of the fractal curve, plays an important role in this analysis. A Langevin equation with a particular model of noise is proposed and solved using techniques of the Fα-Calculus.

  6. Re-analysis of previous laboratory phase curves: 2. Connections between opposition effect morphology and spectral features of stony meteorites

    NASA Astrophysics Data System (ADS)

    Déau, Estelle; Spilker, Linda J.; Flandes, Alberto

    2016-07-01

    We investigate connections between the opposition phase curves and the spectra from ultraviolet to near infrared wavelengths of stony meteorites. We use two datasets: the reflectance dataset of Capaccioni et al. ([1990] Icarus, 83, 325), which consists of optical phase curves (from 2° to 45°) of 17 stony meteorites (three carbonaceous chondrites, 11 ordinary chondrites, and three achondrites), and the spectral dataset from the RELAB database consisting of near-ultraviolet to near-infrared spectra of the same meteorites. We re-analyzed the first dataset and fit it with two morphological models to derive the amplitude A, the angular width HWHM of the surge and the slope S of the linear part. Our re-analysis confirms that stony meteorites have a non-monotonic behavior of the surge amplitude with albedo, which is also observed in planetary surfaces (Déau et al. [2013] Icarus, 226, 1465), laboratory samples (Nelson et al. [2004] Proc. Lunar Sci. Conf., 35, p. 1089) and asteroids (Belskaya and Shevchenko [2000] Icarus, 147, 94). We find a very strong correlation between the opposition effect morphological parameters and the slope of the spectra between 0.75 μm and 0.95 μm. In particular, we found that meteorites with a positive amplitude-albedo correlation have a positive spectral slope between 0.75 μm and 0.95 μm, while meteorites with a negative amplitude-albedo correlation have a negative spectral slope between 0.75 μm and 0.95 μm. We have ruled out the role of the meteorite samples' macro-properties (grain size, porosity and macroscopic roughness) in the correlations found because these properties were constant during the preparation of the samples. If this hypothesis is correct, this implies that other properties like the composition or the micro-properties (grain inclusions, grain shape or microscopic roughness) could have a preponderant role in the non-monotonic behavior of the surge morphology with albedo at small and moderate phase angles. Further

  7. Analysis of α-particle-induced chromosomal aberrations by chemically-induced PCC. Elaboration of dose-effect curves.

    PubMed

    Puig, Roser; Pujol, Mònica; Barrios, Leonardo; Caballín, María Rosa; Barquinero, Joan-Francesc

    2016-09-01

    In a similar way to high-dose exposures to low-LET radiations, cells show difficulties reaching mitosis after high-LET radiation exposure. For this reason, techniques have been proposed that are able to analyze chromosome aberrations in interphase by prematurely condensing the chromosomes (PCC-techniques). Few dose-effect curves for high-LET radiation types have been reported, and none for α-particles. The aim of this study was to evaluate, by chemically-induced PCC, the chromosome aberrations induced by several doses of α-particles. Monolayers of peripheral lymphocytes were exposed to an α-source of Americium-241 with a mean energy entering the cells of 2.7 MeV. Lymphocytes were exposed to 10 doses, from 0-2.5 Gy, and then cultured for 48 h. Colcemid and Calyculin-A were added at 24 and 1 h before harvesting, respectively. During microscope analysis, chromosome rings and extra chromosome pieces were scored in G2/M-PCC and M cells, while dicentric chromosomes were only scored in M cells. As the dose increased, fewer cells were able to reach mitosis and the proportion of G2/M-PCC cells increased. Chromosome rings were hardly observed in M cells when compared to G2/M-PCC cells. Extra fragments were more frequent than rings in both G2/M-PCC and M cells, but with lower frequencies than in G2/M-PCC cells. The distribution of dicentrics and extra fragments showed a clear overdispersion; this was not so evident for rings. The dose-effect curves obtained fitted very well to a linear model. Damaged cells after α-particle irradiation show more difficulties in reaching mitosis than cells exposed to γ-rays. After α-particle irradiation the frequency of all the chromosome aberrations considered increased linearly with the dose, and α-particles clearly produced more dicentrics and extra chromosome pieces with respect to γ-rays. After α-particle exposure, the existence of extra chromosome fragments in PCC cells seems to be a good candidate for use as a biomarker

  8. Analysis of α-particle-induced chromosomal aberrations by chemically-induced PCC. Elaboration of dose-effect curves.

    PubMed

    Puig, Roser; Pujol, Mònica; Barrios, Leonardo; Caballín, María Rosa; Barquinero, Joan-Francesc

    2016-09-01

    In a similar way to high-dose exposures to low-LET radiations, cells show difficulties reaching mitosis after high-LET radiation exposure. For this reason, techniques have been proposed that are able to analyze chromosome aberrations in interphase by prematurely condensing the chromosomes (PCC-techniques). Few dose-effect curves for high-LET radiation types have been reported, and none for α-particles. The aim of this study was to evaluate, by chemically-induced PCC, the chromosome aberrations induced by several doses of α-particles. Monolayers of peripheral lymphocytes were exposed to an α-source of Americium-241 with a mean energy entering the cells of 2.7 MeV. Lymphocytes were exposed to 10 doses, from 0-2.5 Gy, and then cultured for 48 h. Colcemid and Calyculin-A were added at 24 and 1 h before harvesting, respectively. During microscope analysis, chromosome rings and extra chromosome pieces were scored in G2/M-PCC and M cells, while dicentric chromosomes were only scored in M cells. As the dose increased, fewer cells were able to reach mitosis and the proportion of G2/M-PCC cells increased. Chromosome rings were hardly observed in M cells when compared to G2/M-PCC cells. Extra fragments were more frequent than rings in both G2/M-PCC and M cells, but with lower frequencies than in G2/M-PCC cells. The distribution of dicentrics and extra fragments showed a clear overdispersion; this was not so evident for rings. The dose-effect curves obtained fitted very well to a linear model. Damaged cells after α-particle irradiation show more difficulties in reaching mitosis than cells exposed to γ-rays. After α-particle irradiation the frequency of all the chromosome aberrations considered increased linearly with the dose, and α-particles clearly produced more dicentrics and extra chromosome pieces with respect to γ-rays. After α-particle exposure, the existence of extra chromosome fragments in PCC cells seems to be a good candidate for use as a biomarker

  9. Hyperglycemia associated dissociative fugue (organic dissociative disorder) in an elderly

    PubMed Central

    Ram, Dushad; Ashoka, H. G; Gowdappa, Basavnna

    2015-01-01

    Inadequate glycemic control in patients with diabetes is known to be associated with psychiatric disorders such as depression, anxiety disorder, and cognitive impairment. However, dissociative syndrome has not been reported so far. Here we are reporting a case of repeated dissociative fugue associated with hyperglycemia, in an elderly with type II diabetes. Possible neurobiological mechanism has been discussed. PMID:26286620

  10. The dissociative character: a reconsideration of "multiple personality".

    PubMed

    Brenner, I

    1994-01-01

    The author has interviewed and reviewed the cases of over 100 patients with a suspected diagnosis of multiple personality disorder (MPD). He finds it clinically useful to think of a continuum of character pathology in which dissociative and defensive altered states predominate. At one end of this continuum is MPD, which he considers a lower-level dissociative character. He redefines dissociation as a defensive altered state, due to autohypnosis, which augments repression or splitting. Depending on the degree of integration of the ego, it may result in a broad range of disturbances of alertness, awareness, memory, and identity. Four vignettes are presented which illustrate a transient hypnoid state, "characterological" dissociation in an upper-level dissociative character, and two cases of MPD, including one emerging in analysis.

  11. Usefulness of three-channel multiplex real-time PCR and melting curve analysis for simultaneous detection and identification of the Mycobacterium tuberculosis complex and nontuberculous mycobacteria.

    PubMed

    Hong, Yun Ji; Chung, Young Hoon; Kim, Taek Soo; Song, Sang Hoon; Park, Kyoung Un; Yim, Jae Joon; Song, Junghan; Lee, Jae Ho; Kim, Eui Chong

    2011-11-01

    We attempted to determine the benefits of three-channel multiplex real-time PCR and melting curve analysis not only in detecting and distinguishing between nontuberculous mycobacteria (NTM) and the Mycobacterium tuberculosis complex but also in identifying NTM to the species level.

  12. Curves and Their Properties.

    ERIC Educational Resources Information Center

    Yates, Robert C.

    This volume, a reprinting of a classic first published in 1952, presents detailed discussions of 26 curves or families of curves, and 17 analytic systems of curves. For each curve the author provides a historical note, a sketch or sketches, a description of the curve, a discussion of pertinent facts, and a bibliography. Depending upon the curve,…

  13. The effect of elevated methane pressure on methane hydrate dissociation

    USGS Publications Warehouse

    Circone, S.; Stern, L.A.; Kirby, S.H.

    2004-01-01

    Methane hydrate, equilibrated at P, T conditions within the hydrate stability field, was rapidly depressurized to 1.0 or 2.0 MPa and maintained at isobaric conditions outside its stability field, while the extent and rate of hydrate dissociation was measured at fixed, externally maintained temperatures between 250 and 288 K. The dissociation rate decreases with increasing pressure at a given temperature. Dissociation rates at 1.0 MPa parallel the complex, reproducible T-dependence previously observed between 250 and 272 K at 0.1 MPa. The lowest rates were observed near 268 K, such that >50% of the sample can persist for more than two weeks at 0.1 MPa to more than a month at 1 and 2 MPa. Varying the pressure stepwise in a single experiment increased or decreased the dissociation rate in proportion to the rates observed in the isobaric experiments, similar to the rate reversibility previously observed with stepwise changes in temperature at 0.1 MPa. At fixed P, T conditions, the rate of methane hydrate dissociation decreases monotonically with time, never achieving a steady rate. The relationship between time (t) and the extent of hydrate dissociation is empirically described by: Evolved gas (%) = A??tB where the pre-exponential term A ranges from 0 to 16% s-B and the exponent B is generally <1. Based on fits of the dissociation results to Equation 1 for the full range of temperatures (204 to 289 K) and pressures (0.1 to 2.0 MPa) investigated, the derived parameters can be used to predict the methane evolution curves for pure, porous methane hydrate to within ??5%. The effects of sample porosity and the presence of quartz sand and seawater on methane hydrate dissociation are also described using Equation 1.

  14. The development and psychometric characteristics of the Somatoform Dissociation Questionnaire (SDQ-20).

    PubMed

    Nijenhuis, E R; Spinhoven, P; Van Dyck, R; Van der Hart, O; Vanderlinden, J

    1996-11-01

    According to 19th century French psychiatry and contemporary clinical observations, dissociation pertains to both psychological and somatoform components of experience, reactions, and functions. Because such an instrument was lacking, we aimed to develop a self-reporting questionnaire measuring what we propose to call somatoform dissociation. Patients with dissociate disorder and with other DSM-IV psychiatric diagnoses completed a list of 75 items that, according to clinical experience and expert judgment, could reflect instances of somatoform dissociation. Separate logistic analyses and determination of discriminant indices per item revealed 20 items that best discriminated between those with and without dissociative disorders. Mokken analysis showed that these items are strongly scalable on a dimensional latent scale interpreted to measure somatoform dissociation. Reliability of the scale was high. Construct validity was supported by high intercorrelations with the Dissociation Questionnaire, which measures psychological dissociation, and higher scores of patients with dissociative identity disorder compared with patients with dissociative disorders not otherwise specified. In conclusion, the Somatoform Dissociation Questionnaire (SDQ-20) is a scale of good psychometric quality, which measures somatoform dissociation. The symptoms pertain to negative and positive dissociative phenomena, which were well known in 19th century French psychiatry as the mental stigmata and mental accidents of hysteria.

  15. First-principles analysis of C2H2 molecule diffusion and its dissociation process on the ferromagnetic bcc-Fe(110) surface

    NASA Astrophysics Data System (ADS)

    Ikeda, Minoru; Yamasaki, Takahiro; Kaneta, Chioko

    2010-09-01

    Using the projector-augmented plane wave method, we study diffusion and dissociation processes of C2H2 molecules on the ferromagnetic bcc-Fe(110) surface and investigate the formation process of graphene created by C2H2 molecules. The most stable site for C2H2 on the Fe surface is a hollow site and its adsorption energy is - 3.5 eV. In order to study the diffusion process of the C2H2 molecule, the barrier height energies for the C atom, C2-dimer and CH as well as the C2H2 molecule are estimated using the nudged elastic band method. The barrier height energy for C2H2 is 0.71 eV and this indicates that the C2H2 diffuses easily on this FM bcc-Fe(110) surface. We further investigate the two step dissociation process of C2H2 on Fe. The first step is the dissociation of C2H2 into C2H and H, and the second step is that of C2H into C2 and H. Their dissociation energies are 0.9 and 1.2 eV, respectively. These energies are relatively small compared to the dissociation energy 7.5 eV of C2H2 into C2H and H in the vacuum. Thus, the Fe surface shows catalytic effects. We further investigate the initial formation process of graphene by increasing the coverage of C2H2. The formation process of the benzene molecule on the FM bcc(110) surface is also discussed. We find that there exists a critical coverage of C2H2 which characterizes the beginning of the formation of the graphene.

  16. Dissociative States and Neural Complexity

    ERIC Educational Resources Information Center

    Bob, Petr; Svetlak, Miroslav

    2011-01-01

    Recent findings indicate that neural mechanisms of consciousness are related to integration of distributed neural assemblies. This neural integration is particularly vulnerable to past stressful experiences that can lead to disintegration and dissociation of consciousness. These findings suggest that dissociation could be described as a level of…

  17. Psychometric properties of the Dissociative Experiences Scale.

    PubMed

    Dubester, K A; Braun, B G

    1995-04-01

    The test-retest reliability of the Dissociative Experiences Scale (DES; Bernstein EM, Putnam FW [1986] Development, reliability, and validity of a dissociation scale. The Journal of Nervous and Mental Disease 174:727-735) in a clinical sample was found to be .93 for the total DES score and .95, .89, and .82 for the three subscale scores of amnesia, depersonalization-derealization, and absorption (dissociative identity disorder [DID], DSM-IV), respectively. Test-retest reliabilities within diagnostic groups of multiple personality disorder, dissociative disorder not otherwise specified, and a general other category of psychiatric diagnoses were obtained for total and subscale scores on the DES. These ranged from .78 to .96. Tests of mean scores across the two test sessions showed the total and subscale scores to be temporally stable. The DES was also found to be highly internally consistent: Cronbach's alphas of .96 and .97 were observed for the total DES scores taken at times 1 and 2, respectively. Construct validity of the DES was demonstrated by differentiation among the subscale scores in a repeated-measures analysis of variance (F[2,154] = 32.03, p < or = .001). Normality and general distribution issues were also addressed and provided a rationale for using the DES with parametric statistics. Reasons why the DES (as it was originally designed) is not appropriate as a dependent measure in outcome research are discussed, along with needed future research. Implications of the findings for the clinical usefulness of the DES as a diagnostic instrument are noted.

  18. Dissociation of polyoma virus by the chelation of calcium ions found associated with purified virions.

    PubMed

    Brady, J N; Winston, V D; Consigli, R A

    1977-09-01

    Analysis of polyoma virions by X-ray fluorometry demonstrated that calcium (Ca2+) was associated with the purified virion. Treatment of purified virions with ethyleneglycol-bis-N,N'-tetraacetic acid (EGTA), which chelates Ca2+, and the reducing agent dithiothreitol caused the virions to dissociate. Electron microscopy revealed that the virions were dissociated to the capsomere level. Incubation of polyoma virions with 150 mM NaCl, 10 mM EGTA, and 3 mM dithiothreitol was optimum for the dissociation reaction. The pH for the dissociation reaction ranged from 7.5 to 10.5. Cesium chloride density gradient centrifugation indicated that both EGTA and dithiothreitol were necessary for dissociation to occur; neither reagent alone dissociated the virus. The major protein product of the dissociated viral particles sedimented at 12S. Relationships between these experiments and the alkaline carbonate-bicarbonate dissociation of polyoma are discussed. PMID:197269

  19. Dissociation Patterns in Evolving Populations

    NASA Astrophysics Data System (ADS)

    Moreno, F. J.; Hernández, J. A.; Sánchez, F.

    2011-09-01

    The recent explosion and availability of mobility based technologies such as geographic information systems, cell phones equipped with built-in GPS, among others, are a valuable source of spatio-temporal data. However, only recently there have been works focused on identifying movement patterns in groups of moving entities. We focus on a particular movement pattern: dissociation. A dissociation pattern occurs when an entity that was once associated to a population, eventually separated from it and subsequently reintegrated it again. The backwarding and forwarding patterns are a type of dissociation where an entity stays behind or ahead of another entity, respectively. Dissociation really is a diversity generator, so instead avoiding it, taking advantage could be better to prevent premature convergence in evolutionary algorithms. In this work, we present formal mathematical definitions for these patterns. A discussion of how to use dissociation patterns as a mean to preserve diversity in evolutionary algorithms is also shown.

  20. Rapid detection of isoniazid resistance in Mycobacterium tuberculosis isolates by use of real-time-PCR-based melting curve analysis.

    PubMed

    Hu, Siyu; Li, Guoli; Li, Hui; Liu, Xiaoli; Niu, Jianjun; Quan, Shengmao; Wang, Feng; Wen, Huixin; Xu, Ye; Li, Qingge

    2014-05-01

    The MeltPro TB/INH assay, recently approved by the Chinese Food and Drug Administration, is a closed-tube, dual-color, melting curve analysis-based, real-time PCR test specially designed to detect 30 isoniazid (INH) resistance mutations in katG position 315 (katG 315), the inhA promoter (positions -17 to -8), inhA position 94, and the ahpC promoter (positions -44 to -30 and -15 to 3) of Mycobacterium tuberculosis. Here we evaluated both the analytical performance and clinical performance of this assay. Analytical studies with corresponding panels demonstrated that the accuracy for detection of different mutation types (10 wild-type samples and 12 mutant type samples), the limit of detection (2×10(3) to 2×10(4) bacilli/ml), reproducibility (standard deviation [SD], <0.4°C), and the lowest heteroresistance level (40%) all met the parameters preset by the kit. The assay could be run on five types of real-time PCR machines, with the shortest running time (105 min) obtained with the LightCycler 480 II. Clinical studies enrolled 1,096 clinical isolates collected from three geographically different tuberculosis centers, including 437 INH-resistant isolates and 659 INH-susceptible isolates characterized by traditional drug susceptibility testing on Löwenstein-Jensen solid medium. The clinical sensitivity and specificity of the MeltPro TB/INH assay were 90.8% and 96.4%, respectively. DNA sequencing analysis showed that, except for the 5 mutants outside the detection range of the MeltPro assay, a concordance rate between the two methods of 99.1% (457/461) was obtained. Among the 26 mutation types detected, katG S315T (AGC→ACC), inhA -15C→T, katG S315N (AGC→AAC), and ahpC promoter -10C→T accounted for more than 90%. Overall, the MeltPro TB/INH assay represents a reliable and rapid tool for the detection of INH resistance in clinical isolates.

  1. Multilayer theory for delamination analysis of a composite curved bar subjected to end forces and end moments

    NASA Technical Reports Server (NTRS)

    Ko, William L.; Jackson, Raymond H.

    1989-01-01

    A composite test specimen in the shape of a semicircular curved bar subjected to bending offers an excellent stress field for studying the open-mode delamination behavior of laminated composite materials. This is because the open-mode delamination nucleates at the midspan of the curved bar. The classical anisotropic elasticity theory was used to construct a multilayer theory for the calculations of the stress and deformation fields induced in the multilayered composite semicircular curved bar subjected to end forces and end moments. The radial location and intensity of the open-mode delamination stress were calculated and were compared with the results obtained from the anisotropic continuum theory and from the finite element method. The multilayer theory gave more accurate predictions of the location and the intensity of the open-mode delamination stress than those calculated from the anisotropic continuum theory.

  2. X-ray photoemission analysis of clean and carbon monoxide-chemisorbed platinum(111) stepped surfaces using a curved crystal

    PubMed Central

    Walter, Andrew L.; Schiller, Frederik; Corso, Martina; Merte, Lindsay R.; Bertram, Florian; Lobo-Checa, Jorge; Shipilin, Mikhail; Gustafson, Johan; Lundgren, Edvin; Brión-Ríos, Anto´n X.; Cabrera-Sanfelix, Pepa; Sánchez-Portal, Daniel; Ortega, J. Enrique

    2015-01-01

    Surface chemistry and catalysis studies could significantly gain from the systematic variation of surface active sites, tested under the very same conditions. Curved crystals are excellent platforms to perform such systematics, which may in turn allow to better resolve fundamental properties and reveal new phenomena. This is demonstrated here for the carbon monoxide/platinum system. We curve a platinum crystal around the high-symmetry (111) direction and carry out photoemission scans on top. This renders the spatial core-level imaging of carbon monoxide adsorbed on a ‘tunable' vicinal surface, allowing a straightforward visualization of the rich chemisorption phenomenology at steps and terraces. Through such photoemission images we probe a characteristic elastic strain variation at stepped surfaces, and unveil subtle stress-release effects on clean and covered vicinal surfaces. These results offer the prospect of applying the curved surface approach to rationally investigate the chemical activity of surfaces under real pressure conditions. PMID:26561388

  3. X-ray photoemission analysis of clean and carbon monoxide-chemisorbed platinum(111) stepped surfaces using a curved crystal

    DOE PAGES

    Walter, Andrew L.; Schiller, Frederik; Corso, Martina; Merte, Lindsay R.; Bertram, Florian; Lobo-Checa, Jorge; Shipilin, Mikhail; Gustafson, Johan; Lundgren, Edvin; Brión-Ríos, Anto´n X.; et al

    2015-11-12

    Surface chemistry and catalysis studies could significantly gain from the systematic variation of surface active sites, tested under the very same conditions. Curved crystals are excellent platforms to perform such systematics, which may in turn allow to better resolve fundamental properties and reveal new phenomena. This is demonstrated here for the carbon monoxide/platinum system. We curve a platinum crystal around the high-symmetry (111) direction and carry out photoemission scans on top. This renders the spatial core-level imaging of carbon monoxide adsorbed on a 'tunable' vicinal surface, allowing a straightforward visualization of the rich chemisorption phenomenology at steps and terraces. Throughmore » such photoemission images we probe a characteristic elastic strain variation at stepped surfaces, and unveil subtle stress-release effects on clean and covered vicinal surfaces. Lastly, these results offer the prospect of applying the curved surface approach to rationally investigate the chemical activity of surfaces under real pressure conditions.« less

  4. X-ray photoemission analysis of clean and carbon monoxide-chemisorbed platinum(111) stepped surfaces using a curved crystal

    SciTech Connect

    Walter, Andrew L.; Schiller, Frederik; Merte, Lindsay R.; Bertram, Florian; Lobo-Checa, Jorge; Gustafson, Johan; Lundgren, Edvin; Brión-Ríos, Anto´n X.; Cabrera-Sanfelix, Pepa; Sánchez-Portal, Daniel

    2015-11-12

    Surface chemistry and catalysis studies could significantly gain from the systematic variation of surface active sites, tested under the very same conditions. Curved crystals are excellent platforms to perform such systematics, which may in turn allow to better resolve fundamental properties and reveal new phenomena. This is demonstrated here for the carbon monoxide/platinum system. We curve a platinum crystal around the high-symmetry (111) direction and carry out photoemission scans on top. This renders the spatial core-level imaging of carbon monoxide adsorbed on a 'tunable' vicinal surface, allowing a straightforward visualization of the rich chemisorption phenomenology at steps and terraces. Through such photoemission images we probe a characteristic elastic strain variation at stepped surfaces, and unveil subtle stress-release effects on clean and covered vicinal surfaces. Lastly, these results offer the prospect of applying the curved surface approach to rationally investigate the chemical activity of surfaces under real pressure conditions.

  5. Analysis of the flickering in the visual light curve of the declining old nova RW UMi (1956) with wavelets and Hurst analysis

    NASA Astrophysics Data System (ADS)

    Saygac, A. Talat; Balman, Solen; Esenoglu, Hasan H.; Gulsecen, Hulusi; Alis, Sinan; Bianchini, Antonio; Tamburini, Fabrizio

    2016-07-01

    We characterize the flickering observed in the optical light curve of the old nova RW UMi (1956) by determining its position in the α-Σ diagram of Fritz and Bruch (1998) classification scheme. The strength of flickering on a given timescale is represented by Σ, while α is the energy distribution of the flickering at different timescales. Here α is derived independently with both the wavelets and the Hurst R/S analysis. The flickering shows self-similarity on a timescale ranging from tens of minutes down to few minutes and, in the future, we plan to check whether stochastic persistent memory can be seen also down to time scales of seconds. In the α-Σ diagram, RW UMi occupies the region of magnetic systems. Since the old nova shows QPOs we conclude that this method can be used to characterize CV subtypes especially when their classification is uncertain.

  6. Optical analysis of a curved-slats fixed-mirror solar concentrator by a forward ray-tracing procedure.

    PubMed

    Pujol Nadal, Ramon; Martínez Moll, Víctor

    2013-10-20

    Fixed-mirror solar concentrators (FMSCs) use a static reflector and a moving receiver. They are easily installable on building roofs. However, for high-concentration factors, several flat mirrors would be needed. If curved mirrors are used instead, high-concentration levels can be achieved, and such a solar concentrator is called a curved-slats fixed-mirror solar concentrator (CSFMSC), on which little information is available. Herein, a methodology is proposed to characterize the CSFMSC using 3D ray-tracing tools. The CSFMSC shows better optical characteristics than the FMSC, as it needs fewer reflector segments for achieving the same concentration and optical efficiency.

  7. The dissociative disorders. Rarely considered and underdiagnosed.

    PubMed

    Coons, P M

    1998-09-01

    A wide variety of dissociative disorders, including dissociative amnesia, dissociative fugue, depersonalization disorder, dissociative identity disorder, and various forms of dissociative disorder not otherwise specified. In many instances, these disorders are either underdiagnosed or misdiagnosed secondary to the clinician's mistaken belief that dissociative disorders are rare. Recent research shows that dissociative disorders may comprise 5% to 10% of psychiatric populations. This article reviews the epidemiology and clinical symptomatology of these disorders. In addition, various screening and diagnostic instruments, such as the DES, Structured Clinical Interview for Dissociative Disorders, and MMPI, are discussed.

  8. Analysis of tipping-curve measurements performed at the DSS-13 beam-waveguide antenna at 32.0 and 8.45 GigaHertz

    NASA Technical Reports Server (NTRS)

    Morabito, D. D.; Skjerve, L.

    1995-01-01

    This article reports on the analysis of the Ka-band Antenna Performance Experiment tipping-curve data acquired at the DSS-13 research and development beam-waveguide (BWG) antenna. By measuring the operating system temperatures as the antenna is moved form zenith to low-elevation angles and fitting a model to the data, one can obtain information on how well the overall temperature model behaves at zenith and approximate the contribution due to the atmosphere. The atmospheric contribution estimated from the data can be expressed in the form of (1) atmospheric noise temperatures that can provide weather statistic information and be compared against those estimated from other methods and (2) the atmospheric loss factor used to refer efficiency measurements to zero atmosphere. This article reports on an analysis performed on a set of 68 8.4-GHz and 67 32-GHz tipping-curve data sets acquired between December 1993 and May 1995 and compares the results with those inferred from a surface model using input meteorological data and from water vapor radiometer (WVR) data. The general results are that, for a selected subset of tip curves, (1) the BWG tipping-curve atmospheric temperatures are in good agreement with those determined from WVR data (the average difference is 0.06 +/- 0.64 K at 32 GHz) and (2) the surface model average values are biased 3.6 K below those of the BWG and WVR at 32 GHz.

  9. The unification of consciousness: Approaches to the healing of dissociation.

    PubMed

    Rosik, C H

    1995-09-01

    This study examines the process of unifying consciousness as described in the Christian mystical tradition and in the psychological treatment of dissociative identity disorder (DID). A comparison of the experience of the self in the contemplative and the DID patient is also undertaken to emphasize points of continuity. The present analysis proposes that differentiating first-order dissociation (separation from a divine being or source) from second-order dissociation (separation from parts of one's own self and experiences) can preserve the insights gathered from both spiritual and psychological perspectives.

  10. A comparative analysis of the dissociation kinetics models for silane molecules on the surface at epitaxial growth, of silicon films, in vacuum

    SciTech Connect

    Orlov, L. K. Smyslova, T. N.

    2006-01-15

    On the basis of different physicochemical models, surface concentrations of monosilane dissociation products on the surface of a silicon film are analyzed. The calculations have made it possible to estimate the crystallization factor and its dependence on temperature and gas pressure in the reactor. It is shown that the qualitative character of the temperature variations of the surface concentrations and crystallization factor depends slighty on the specific choice of the radical SiH{sub n} that controls the time of the pyrolysis process. The general form of the investigated dependences is also slightly sensitive to the stage at which hydrogen is removed from the surface. At the same time, the quantitative characteristics of the surface concentrations substantially depend on the choice of the specific features of silane dissociation on the surface. For silicon atoms on the growth surface, the dependences of the crystallization factor on the temperature of the epitaxial process, gas pressure in the reactor, and dissociation rates for silane molecules on the surface are analyzed. It is shown that, at elevated growth temperatures, the rate of film growth is sensitive to molecule pyrolysis rate, whereas, at low growth temperatures, the filling of the surface by hydrogen is a unique factor that controls the rate of the epitaxial process.

  11. A Unified Latent Curve, Latent State-Trait Analysis of the Developmental Trajectories and Correlates of Positive Orientation

    ERIC Educational Resources Information Center

    Alessandri, Guido; Caprara, Gian Vittorio; Tisak, John

    2012-01-01

    Literature documents that the judgments people hold about themselves, their life, and their future are important ingredients of their psychological functioning and well-being and are commonly related to each other. In this article, results from a longitudinal study (N = 298, 45% males) are presented. Using an integrative Latent Curve, Latent…

  12. Application of a tangent curve mathematical model for analysis of the mechanical behaviour of sunflower bulk seeds

    NASA Astrophysics Data System (ADS)

    Sigalingging, Riswanti; Herák, David; Kabutey, Abraham; Dajbych, Oldřich; Hrabě, Petr; Mizera, Čestmír

    2015-10-01

    This paper evaluate the use of a tangent curve mathematical model for representation of the mechanical behaviour of sunflower bulk seeds. Compression machine (Tempos Model 50, Czech Republic) and pressing vessel diameter 60 mm were used for the loading experiment. Varying forces between 50 and 130 kN and speeds ranging from 10, 50, and 100 mm min-1 were applied respectively on the bulk seeds with moisture content 12.37±0.38% w.b. The relationship between force and deformation curves of bulk seeds of pressing height 80 mm was described. The oil point strain was also determined from the different deformation values namely 30, 35, 40, and 45 mm at speed 10 mm min-1. Based on the results obtained, model coefficients were determined for fitting the experimental load and deformation curves. The validity of these coefficients were dependent on the bulk seeds of pressing height, vessel diameter, maximum force 110 kN, and speed 10 mm min-1, where optimal oil yield was observed. The oil point was detected at 45 mm deformation giving the strain value of 0.56 with the corresponding force 16.65±3.51 kN and energy 1.06±0.18 MJ m-3. At the force of 130 kN, a serration effect on the curves was indicated; hence, the compression process was ceased.

  13. Growth curve analysis of placental and fetal growth influenced by adjacent fetal sex status under crowded uterine conditions in pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Intrauterine position and sex of adjacent fetuses in litter bearing species have been implicated in physiological and behavioral differences in males and females. Our objective was to establish growth curves for fetal and placental weight gain as influenced by sex status of flanking fetuses under cr...

  14. Langevin power curve analysis for numerical wind energy converter models with new insights on high frequency power performance

    NASA Astrophysics Data System (ADS)

    Mücke, Tanja A.; Wächter, Matthias; Milan, Patrick; Peinke, Joachim

    2015-11-01

    Based on the Langevin equation it has been proposed to obtain power curves for wind turbines from high frequency data of wind speed measurements u(t) and power output P (t). The two parts of the Langevin approach, power curve and drift field, give a comprehensive description of the conversion dynamic over the whole operating range of the wind turbine. The method deals with high frequent data instead of 10 min means. It is therefore possible to gain a reliable power curve already from a small amount of data per wind speed. Furthermore, the method is able to visualize multiple fixed points, which is e.g. characteristic for the transition from partial to full load or in case the conversion process deviates from the standard procedures. In order to gain a deeper knowledge it is essential that the method works not only for measured data but also for numerical wind turbine models and synthetic wind fields. Here, we characterize the dynamics of a detailed numerical wind turbine model and calculate the Langevin power curve for different data samplings. We show, how to get reliable results from synthetic data and verify the applicability of the method for field measurements with ultra-sonic, cup and Lidar measurements. The independence of the fixed points on site specific turbulence effects is also confirmed with the numerical model. Furthermore, we demonstrate the potential of the Langevin approach to detect failures in the conversion process and thus show the potential of the Langevin approach for a condition monitoring system.

  15. Differential School Effects among Low, Middle, and High Social Class Composition Schools: A Multiple Group, Multilevel Latent Growth Curve Analysis

    ERIC Educational Resources Information Center

    Palardy, Gregory J.

    2008-01-01

    This study uses large-scale survey data and a multiple group, multilevel latent growth curve model to examine differential school effects between low, middle, and high social class composition public schools. The results show that the effects of school inputs and school practices on learning differ across the 3 subpopulations. Moreover, student…

  16. Statistical methods for pavement performance curve building, historical analysis, data sampling and storage: Appendix D. Final report

    SciTech Connect

    1998-08-01

    The technical memorandum is intended to discuss the detailed procedure required for carrying out the statistical analyses of historical pavement condition data for building pavement performance curves. This chapter assumes the availability of the historical data in a spreadsheet format (Microsoft{trademark} Excel) that has been retrieved from the master (pavement management system) database.

  17. FIRST PRECISION LIGHT CURVE ANALYSIS OF THE NEGLECTED EXTREME MASS RATIO SOLAR-TYPE BINARY HR BOOTIS

    SciTech Connect

    Samec, Ronald G.; Benkendorf, Barry; Dignan, James B.; Robb, Russell; Kring, James; Faulkner, Danny R.

    2015-04-15

    HR Bootis is a neglected binary that is found to be a solar-type (G2V) extreme mass ratio binary (EMRB). It was discovered by Hanley and Shapley in 1940. Surprisingly, little has been published in the intervening years. In 1999 it was characterized by a 0.31587 day orbital period. Since that time it has been observed by various observers who have determined ∼20 timings of minimum light over the past ∼15,000 orbits. Our observations in 2012 represent the first precision curves in the BVR{sub c}I{sub c} Johnson–Cousins wavelength bands. The light curves have rather low amplitudes, averaging some 0.5 magnitudes, yet they exhibit total eclipses, which is typical of the rare group of solar-type EMRBs. An improved linear ephemeris was computed along with a quadratic ephemeris showing a decaying orbit, which indicates magnetic breaking may be occurring. The light curve solution reveals that HR Boo is a contact system with a somewhat low 21% Roche-lobe fill-out but a mass ratio of q = 4.09 (0.2444), which defines it as an EMRB. Two spots, both hot, were allowed to iterate to fit the light curve asymmetries. Their radii are 32° and 16°. Both are high-latitude polar spots indicative of strong magnetic activity. The shallow contact yet nearly equal component temperatures makes it an unusual addition to this group.

  18. A regret theory approach to decision curve analysis: A novel method for eliciting decision makers' preferences and decision-making

    PubMed Central

    2010-01-01

    Background Decision curve analysis (DCA) has been proposed as an alternative method for evaluation of diagnostic tests, prediction models, and molecular markers. However, DCA is based on expected utility theory, which has been routinely violated by decision makers. Decision-making is governed by intuition (system 1), and analytical, deliberative process (system 2), thus, rational decision-making should reflect both formal principles of rationality and intuition about good decisions. We use the cognitive emotion of regret to serve as a link between systems 1 and 2 and to reformulate DCA. Methods First, we analysed a classic decision tree describing three decision alternatives: treat, do not treat, and treat or no treat based on a predictive model. We then computed the expected regret for each of these alternatives as the difference between the utility of the action taken and the utility of the action that, in retrospect, should have been taken. For any pair of strategies, we measure the difference in net expected regret. Finally, we employ the concept of acceptable regret to identify the circumstances under which a potentially wrong strategy is tolerable to a decision-maker. Results We developed a novel dual visual analog scale to describe the relationship between regret associated with "omissions" (e.g. failure to treat) vs. "commissions" (e.g. treating unnecessary) and decision maker's preferences as expressed in terms of threshold probability. We then proved that the Net Expected Regret Difference, first presented in this paper, is equivalent to net benefits as described in the original DCA. Based on the concept of acceptable regret we identified the circumstances under which a decision maker tolerates a potentially wrong decision and expressed it in terms of probability of disease. Conclusions We present a novel method for eliciting decision maker's preferences and an alternative derivation of DCA based on regret theory. Our approach may be intuitively more

  19. Are major dissociative disorders characterized by a qualitatively different kind of dissociation?

    PubMed

    Rodewald, Frauke; Dell, Paul F; Wilhelm-Gossling, Claudia; Gast, Ursula

    2011-01-01

    A total of 66 patients with a major dissociative disorder, 54 patients with nondissociative disorders, and 30 nonclinical controls were administered the Structured Clinical Interview for DSM-IV Dissociative Disorders-Revised, the Dissociative Experiences Scale, the Multidimensional Inventory of Dissociation, and the Symptom Checklist 90-Revised. Dissociative patients reported significantly more dissociative and nondissociative symptoms than did nondissociative patients and nonclinical controls. When general psychopathology was controlled, the dissociation scores of dissociative patients were still significantly higher than those of both other groups, whereas the dissociation scores of nondissociative patients and nonclinical controls no longer differed. These findings appear to be congruent with a typological model of dissociation that distinguishes between 2 qualitatively different kinds of dissociation. Specifically, the results of this study suggest that the dissociation that occurs in major dissociative disorders (i.e., dissociative identity disorder [DID] and dissociative disorder not otherwise specified, Type 1 [DDNOS-1]) is qualitatively different from the dissociation that occurs in persons who do not have a dissociative disorder. In contrast to previous research, the dissociation of persons who do not have a dissociative disorder is not limited to absorption; it covers a much wider range of phenomena. The authors hypothesize that different mechanisms produce the dissociation of persons with DID and DDNOS-1 as opposed to the dissociation of persons who do not have a dissociative disorder.

  20. Perspective on Afterglows: Numerically Computed Views, Light Curves, and the Analysis of Homogeneous and Structured Jets with Lateral Expansion

    NASA Astrophysics Data System (ADS)

    Salmonson, Jay D.

    2003-08-01

    Herein I present numerical calculations of light curves of homogeneous and structured afterglows with various lateral expansion rates as seen from any vantage point. Such calculations allow for direct simulation of observable quantities for complex afterglows with arbitrary energy distributions and lateral expansion paradigms. A simple, causal model is suggested for lateral expansion of the jet as it evolves: namely, that the lateral expansion kinetic energy derives from the forward kinetic energy. As such, the homogeneous jet model shows that lateral expansion is important at all times in the afterglow evolution and that analytical scaling laws do a poor job at describing the afterglow decay before and after the break. In particular, I find that lateral expansion does not cause a break in the light curve as had been predicted. A primary purpose of this paper is to study structured afterglows, which do a good job of reproducing global relationships and correlations in the data and thus suggest the possibility of a universal afterglow model. Simulations of structured jets show a general trend in which jet breaks become more pronounced with increasing viewing angle with respect to the jet axis. In fact, under certain conditions a bump can occur in the light curve at the jet-break time. I derive scaling relations for this bump and suggest that it may be a source of some bumps in observed light curves such as that of GRB 000301C. A couple of lateral expansion models are tested over a range of efficiencies and viewing angles, and it is found that lateral expansion can, in some cases, substantially sharpen the jet break. I show flux surface contour maps and simulated images of the afterglows that give insight into how they evolve and determine their light curves.

  1. Ion mobility spectrometry reveals duplex DNA dissociation intermediates.

    PubMed

    Burmistrova, Anastasia; Gabelica, Valérie; Duwez, Anne-Sophie; De Pauw, Edwin

    2013-11-01

    Electrospray ionization (ESI) soft desolvation is widely used to investigate fragile species such as nucleic acids. Tandem mass spectrometry (MS/MS) gives access to the gas phase energetics of the intermolecular interactions in the absence of solvent, by following the dissociation of mass-selected ions. Ion mobility mass spectrometry (IMS) provides indications on the tridimensional oligonucleotide structure by attributing a collision cross section (CCS) to the studied ion. Electrosprayed duplexes longer than eight bases pairs retain their helical structure in a solvent-free environment. However, the question of conformational changes under activation in MS/MS studies remains open. The objective of this study is to probe binding energetics and characterize the unfolding steps occurring prior to oligonucleotide duplex dissociation. Comparing the evolution of CCS with collision energy and breakdown curves, we characterize dissociation pathways involved in CID-activated DNA duplex separation into single strands, and we demonstrate here the existence of stable dissociation intermediates. At fixed duplex length, dissociation pathways were found to depend on the percentage of GC base pairs and on their position in the duplex. Our results show that pure GC sequences undergo a gradual compaction until reaching the dissociation intermediate: A-helix. Mixed AT-GC sequences were found to present at least two conformers: a classic B-helix and an extended structure where the GC tract is a B-helix and the AT tract(s) fray. The dissociation in single strands takes place from both conformers when the AT base pairs are enclosed between two GC tracts or only from the extended conformer when the AT tract is situated at the end(s) of the sequence.

  2. Recurrent Episodes of Dissociative Fugue

    PubMed Central

    Angothu, Hareesh; Pabbathi, Lokeswar Reddy

    2016-01-01

    Dissociative fugue is rare entity to encounter with possible differentials of epilepsy and malingering. It is one of the dissociative disorders rarely seen in clinical practice more often because of the short lasting nature of this condition. This might also be because of organized travel of the individuals during the episodes and return to their families after the recovery from episodes. This is a case description of a patient who has experienced total three episodes of dissociative fugue. The patient has presented during the third episode and two prior episodes were diagnosed as fugue episodes retrospectively based on the history. Planned travel in this case by the patient to a distant location was prevented because of early diagnosis and constant vigilance till the recovery. As in this case, it may be more likely that persons with Dissociative fugue may develop similar episodes if they encounter exceptional perceived stress. However, such conclusions may require follow-up studies. PMID:27114633

  3. Communication: Imaging wavefunctions in dissociative photoionization

    NASA Astrophysics Data System (ADS)

    Scott Hopkins, W.; Mackenzie, Stuart R.

    2011-08-01

    The dissociative ionization dynamics of excited electronic states of the xenon dimer, Xe2, have been studied using velocity map ion imaging (VMI). A one-colour, (2+1) resonant excitation scheme was employed to first excite and then ionize selected vibrational levels of the Xe2 6p 2[1/2]0 0_g^ + Rydberg state. Cationic fragments were then detected by the VMI. The data provide an outstanding example of the reflection principle in photodissociation with the full nodal structure of the Rydberg state wavefunctions clearly observed in the final Xe+ kinetic energy distributions without the need for scanning the excitation energy. Fitting of the observed distributions provides detailed and precise information on the form of the Xe2+ I(1/2g) potential energy curve involved which is in excellent agreement with the results of photoelectron imaging studies [Shubert and Pratt, J. Chem. Phys. 134, 044315 (2011), 10.1063/1.3533361]. Furthermore, the anisotropy of the product angular distributions yields information on the evolution of the electronic character of the ionic state with internuclear separation, R. The combination of the nature of dissociative ionization and the extent of the bound state wavefunctions provide information over an unusually wide range of internuclear separation R (ΔR > 0.75 Å). This would normally require scanning over a considerable energy region but is obtained in these studies at a fixed excitation energy.

  4. Light-scattering investigation of the dissociation behavior of Lunatia heros and Littorina littorea hemocyanins

    SciTech Connect

    Herskovits, T.T.; Mazzella, L.J.; Villanueva, G.B.

    1985-07-16

    The subunit structure and dissociation of the hemocyanins of two marine snails, Lunatia heros and Littorina littorea, were investigated by light-scattering molecular weight methods. The hemocyanins of both species of snails are readily dissociated to fragments of one-tenth and one-twentieth of the parent proteins of close to 9 X 10(6) daltons by either increasing the pH or using dissociating reagents of the hydrophobic urea series or some of the Hofmeister salts. The two hemocyanins investigated possess beta-type subunits, which are known to be resistant to NaCl dissociation. The molecular weight profiles obtained with the various dissociating reagents were single inverted sigmoidal-shaped curves for both Lunatia and Littorina hemocyanins, suggesting overlapping transitions. The ultracentrifugation patterns and the species-distribution plots based on the urea dissociation data of Littorina hemocyanin suggest the presence of whole, half, and one-tenth molecular weight species in the dissociation transition region. Fitting of the urea dissociation data of Littorina hemocyanin obtained at both pH 5.7 and pH 8.0, assuming a sequential two-step dissociation scheme was found to be consistent with a model of a few hydrophobic binding sites at the contact areas of the half-molecules and a much larger apparent number of binding sites (Napp) at the side to side contacts of the one-tenth molecules.

  5. Problems in using p-curve analysis and text-mining to detect rate of p-hacking and evidential value.

    PubMed

    Bishop, Dorothy V M; Thompson, Paul A

    2016-01-01

    Background. The p-curve is a plot of the distribution of p-values reported in a set of scientific studies. Comparisons between ranges of p-values have been used to evaluate fields of research in terms of the extent to which studies have genuine evidential value, and the extent to which they suffer from bias in the selection of variables and analyses for publication, p-hacking. Methods. p-hacking can take various forms. Here we used R code to simulate the use of ghost variables, where an experimenter gathers data on several dependent variables but reports only those with statistically significant effects. We also examined a text-mined dataset used by Head et al. (2015) and assessed its suitability for investigating p-hacking. Results. We show that when there is ghost p-hacking, the shape of the p-curve depends on whether dependent variables are intercorrelated. For uncorrelated variables, simulated p-hacked data do not give the "p-hacking bump" just below .05 that is regarded as evidence of p-hacking, though there is a negative skew when simulated variables are inter-correlated. The way p-curves vary according to features of underlying data poses problems when automated text mining is used to detect p-values in heterogeneous sets of published papers. Conclusions. The absence of a bump in the p-curve is not indicative of lack of p-hacking. Furthermore, while studies with evidential value will usually generate a right-skewed p-curve, we cannot treat a right-skewed p-curve as an indicator of the extent of evidential value, unless we have a model specific to the type of p-values entered into the analysis. We conclude that it is not feasible to use the p-curve to estimate the extent of p-hacking and evidential value unless there is considerable control over the type of data entered into the analysis. In particular, p-hacking with ghost variables is likely to be missed. PMID:26925335

  6. Problems in using p-curve analysis and text-mining to detect rate of p-hacking and evidential value.

    PubMed

    Bishop, Dorothy V M; Thompson, Paul A

    2016-01-01

    Background. The p-curve is a plot of the distribution of p-values reported in a set of scientific studies. Comparisons between ranges of p-values have been used to evaluate fields of research in terms of the extent to which studies have genuine evidential value, and the extent to which they suffer from bias in the selection of variables and analyses for publication, p-hacking. Methods. p-hacking can take various forms. Here we used R code to simulate the use of ghost variables, where an experimenter gathers data on several dependent variables but reports only those with statistically significant effects. We also examined a text-mined dataset used by Head et al. (2015) and assessed its suitability for investigating p-hacking. Results. We show that when there is ghost p-hacking, the shape of the p-curve depends on whether dependent variables are intercorrelated. For uncorrelated variables, simulated p-hacked data do not give the "p-hacking bump" just below .05 that is regarded as evidence of p-hacking, though there is a negative skew when simulated variables are inter-correlated. The way p-curves vary according to features of underlying data poses problems when automated text mining is used to detect p-values in heterogeneous sets of published papers. Conclusions. The absence of a bump in the p-curve is not indicative of lack of p-hacking. Furthermore, while studies with evidential value will usually generate a right-skewed p-curve, we cannot treat a right-skewed p-curve as an indicator of the extent of evidential value, unless we have a model specific to the type of p-values entered into the analysis. We conclude that it is not feasible to use the p-curve to estimate the extent of p-hacking and evidential value unless there is considerable control over the type of data entered into the analysis. In particular, p-hacking with ghost variables is likely to be missed.

  7. Problems in using p-curve analysis and text-mining to detect rate of p-hacking and evidential value

    PubMed Central

    Thompson, Paul A.

    2016-01-01

    Background. The p-curve is a plot of the distribution of p-values reported in a set of scientific studies. Comparisons between ranges of p-values have been used to evaluate fields of research in terms of the extent to which studies have genuine evidential value, and the extent to which they suffer from bias in the selection of variables and analyses for publication, p-hacking. Methods. p-hacking can take various forms. Here we used R code to simulate the use of ghost variables, where an experimenter gathers data on several dependent variables but reports only those with statistically significant effects. We also examined a text-mined dataset used by Head et al. (2015) and assessed its suitability for investigating p-hacking. Results. We show that when there is ghost p-hacking, the shape of the p-curve depends on whether dependent variables are intercorrelated. For uncorrelated variables, simulated p-hacked data do not give the “p-hacking bump” just below .05 that is regarded as evidence of p-hacking, though there is a negative skew when simulated variables are inter-correlated. The way p-curves vary according to features of underlying data poses problems when automated text mining is used to detect p-values in heterogeneous sets of published papers. Conclusions. The absence of a bump in the p-curve is not indicative of lack of p-hacking. Furthermore, while studies with evidential value will usually generate a right-skewed p-curve, we cannot treat a right-skewed p-curve as an indicator of the extent of evidential value, unless we have a model specific to the type of p-values entered into the analysis. We conclude that it is not feasible to use the p-curve to estimate the extent of p-hacking and evidential value unless there is considerable control over the type of data entered into the analysis. In particular, p-hacking with ghost variables is likely to be missed. PMID:26925335

  8. Detector response and intensity cross-contribution as contributing factors to the observed non-linear calibration curves in mass spectrometric analysis.

    PubMed

    Sie, Meng-Jie; Chen, Bud-Gen; Chang, Chiung Dan; Lin, Chia-Han; Liu, Ray H

    2011-01-21

    It is a common knowledge that detector fatigue causes a calibration curve to deviate from the preferred linear relationship at the higher concentration end. With the adaptation of an isotopically labeled analog of the analyte as the internal standard (IS), cross-contribution (CC) of the intensities monitored for the ions designating the analyte and the IS can also result in a non-linear relationship at both ends. A novel approach developed to assess 'the extent and the effect of [CC]… in quantitative GC-MS analysis' can be extended (a) to examine whether a specific set of CC values is accurate; and (b) to differentiate whether the observed non-linear calibration curve is caused by detector fatigue or the CC phenomenon. Data derived from the exemplar secobarbital (SB)/SB-d(5) system (as di-butyl-derivatives) are used to illustrate this novel approach. Comparing the non-linear nature of calibration data that are empirically observed to that derived from theoretical calculation (with the incorporation of adjustment resulting from the ion CC phenomenon), supports the conclusions that (a) both CC and detector fatigue contribute significantly to the observed non-linear nature of the calibration curve based on ion-pair m/z 207/212; and (b) detector fatigue is the dominating contributor when the calibration curve is based on ion-pair m/z 263/268.

  9. Explicit superconic curves.

    PubMed

    Cho, Sunggoo

    2016-09-01

    Conics and Cartesian ovals are extremely important curves in various fields of science. In addition, aspheric curves based on conics are useful in optical design. Superconic curves, recently suggested by Greynolds, are extensions of both conics and Cartesian ovals and have been applied to optical design. However, they are not extensions of aspheric curves based on conics. In this work, we investigate another type of superconic curves. These superconic curves are extensions of not only conics and Cartesian ovals but also aspheric curves based on conics. Moreover, these are represented in explicit form, while Greynolds's superconic curves are in implicit form. PMID:27607506

  10. Dynamics of Dissociative Electron Attachment to Methane

    NASA Astrophysics Data System (ADS)

    Rescigno, T. N.; Douguet, N.; Fonseca, S.; Orel, A. E.; Slaughter, D. S.; Belkacem, A.

    2015-05-01

    We present the results of a theoretical ad experimental study of dissociative electron attachment (DEA) to CH4. The total DEA cross section is dominated by a single broad peak centered near 10 eV, leading predominantly to H-/CH4 and CH2-/CH4dissociation channels. We will present evidence that both of these ion channels result from excitation of a triply degenerate Feshbach resonance (doubly excited negative ion state) of 2T2 symmetry whose parent is the lowest excited triplet state of the neutral molecule. We will present calculated angular distributions based on analysis of the entrance amplitudes obtained from the results of complex Kohn scattering calculations along with experimentally measured angular distributions obtained using the COLTRIMS method. Work performed under the auspices of the US DOE by the LBNL and supported by the U.S. DOE Office of Basic Energy Sciences, Division of Chemical Sciences.

  11. Dissociative disorders in DSM-5.

    PubMed

    Spiegel, David; Lewis-Fernández, Roberto; Lanius, Ruth; Vermetten, Eric; Simeon, Daphne; Friedman, Matthew

    2013-01-01

    The rationale, research literature, and proposed changes to the dissociative disorders and conversion disorder in the fifth edition of the Diagnostic and Statistical Manual of Mental Disorders (DSM-5) are presented. Dissociative identity disorder will include reference to possession as well as identity fragmentation, to make the disorder more applicable to culturally diverse situations. Dissociative amnesia will include dissociative fugue as a subtype, since fugue is a rare disorder that always involves amnesia but does not always include confused wandering or loss of personality identity. Depersonalization disorder will include derealization as well, since the two often co-occur. A dissociative subtype of posttraumatic stress disorder (PTSD), defined by the presence of depersonalization or derealization in addition to other PTSD symptoms, is being recommended, based upon new epidemiological and neuroimaging evidence linking it to an early life history of adversity and a combination of frontal activation and limbic inhibition. Conversion disorder (functional neurological symptom disorder) will likely remain with the somatic symptom disorders, despite considerable dissociative comorbidity. PMID:23394228

  12. Dissociative disorders in DSM-5.

    PubMed

    Spiegel, David; Lewis-Fernández, Roberto; Lanius, Ruth; Vermetten, Eric; Simeon, Daphne; Friedman, Matthew

    2013-01-01

    The rationale, research literature, and proposed changes to the dissociative disorders and conversion disorder in the fifth edition of the Diagnostic and Statistical Manual of Mental Disorders (DSM-5) are presented. Dissociative identity disorder will include reference to possession as well as identity fragmentation, to make the disorder more applicable to culturally diverse situations. Dissociative amnesia will include dissociative fugue as a subtype, since fugue is a rare disorder that always involves amnesia but does not always include confused wandering or loss of personality identity. Depersonalization disorder will include derealization as well, since the two often co-occur. A dissociative subtype of posttraumatic stress disorder (PTSD), defined by the presence of depersonalization or derealization in addition to other PTSD symptoms, is being recommended, based upon new epidemiological and neuroimaging evidence linking it to an early life history of adversity and a combination of frontal activation and limbic inhibition. Conversion disorder (functional neurological symptom disorder) will likely remain with the somatic symptom disorders, despite considerable dissociative comorbidity.

  13. Polymerized and polyethylene glycol-conjugated hemoglobins: a globin-based calibration curve for dynamic light scattering analysis.

    PubMed

    Faggiano, Serena; Ronda, Luca; Bruno, Stefano; Jankevics, Hanna; Mozzarelli, Andrea

    2010-06-15

    Dynamic light scattering (DLS) is a technique capable of determining the hydrodynamic radius of proteins. From this parameter, a molecular weight can be assessed provided that an appropriate calibration curve is available. To this goal, a globin-based calibration curve was used to determine the polymerization state of a recombinant hemoglobin-based oxygen carrier and to assess the equivalent molecular weight of hemoglobins conjugated with polyethylene glycol molecules. The good agreement between DLS values and those obtained from gel filtration chromatography is a consequence of the high similarity in structure, shape, and density within the globin superfamily. Moreover, globins and heme proteins in general share similar spectroscopic properties, thereby reducing possible systematic errors associated with the absorption of the probe radiation by the chromophore.

  14. The Learning Curve of Transareola Single-site Laparoendoscopic Thyroidectomy: CUSUM Analysis of a Single Surgeon’s Experience

    PubMed Central

    Zhu, Guanghui; Zhang, Xueli; Tang, Zhiqiang; Tan, Zhanhai; Chen, Jianrong

    2016-01-01

    Background: Transareola single-site laparoendoscopic thyroidectomy (TASSET) is a rapidly advancing minimally invasive procedure. The purpose of this study was to evaluate the learning curve for TASSET. Subjects and Methods: Forty-five consecutive patients were prospectively divided into group 1 (initial phase), group 2 (intermediate phase), and group 3 (advanced phase) according to their surgical order (15 patients in each group). The operative time, operative blood loss, duration of hospital stay, postoperative pain, and postoperative complications were compared using phases. Results: Statistically significant differences were observed in the different learning phases, among operative time (P<0.05), operative blood loss (P<0.05), hospital stay (P<0.05), and postoperative pain (P<0.05). The postoperative complication rate was low (3/45). Conclusions: Learning curve of the TASSET are improved synchronized at different phases and technical indicators. The establishment of operative space take longer time to skilled master. PMID:27552376

  15. Observations and analysis of a curved jet in the coma of comet 67P/Churyumov-Gerasimenko

    NASA Astrophysics Data System (ADS)

    Lin, Z.-Y.; Lai, I.-L.; Su, C.-C.; Ip, W.-H.; Lee, J.-C.; Wu, J.-S.; Vincent, J.-B.; La Forgia, F.; Sierks, H.; Barbieri, C.; Lamy, P. L.; Rodrigo, R.; Koschny, D.; Rickman, H.; Keller, H. U.; Agarwal, J.; A'Hearn, M. F.; Barucci, M. A.; Bertaux, J.-L.; Bertini, I.; Bodewits, D.; Cremonese, G.; Da Deppo, V.; Davidsson, B.; Debei, S.; De Cecco, M.; Fornasier, S.; Fulle, M.; Groussin, O.; Gutiérrez, P. J.; Güttler, C.; Hviid, S. F.; Jorda, L.; Knollenberg, J.; Kovacs, G.; Kramm, J.-R.; Kührt, E.; Küppers, M.; Lara, L. M.; Lazzarin, M.; López-Moreno, J. J.; Lowry, S.; Marzari, F.; Michalik, H.; Mottola, S.; Naletto, G.; Oklay, N.; Pajola, M.; Rożek, A.; Thomas, N.; Tubiana, C.

    2016-04-01

    Aims: We analyze the physical properties and dynamical origin of a curved jet of comet 67P/Churyumov-Gerasimenko that was observed repeatedly in several nucleus rotations starting on May 30 and persisting until early August, 2015. Methods: We simulated the motion of dust grains ejected from the nucleus surface under the influence of the gravity and viscous drag effect of the expanding gas flow from the rotating nucleus. Results: The formation of the curved jet is a combination of the size of the dust particles (~0.1-1 mm) and the location of the source region near the nucleus equator. This enhances the spiral feature of the collimated dust stream after the dust is accelerated to a terminal speed on the order of m s-1.

  16. Global functioning and disability in dissociative disorders.

    PubMed

    Mueller-Pfeiffer, Christoph; Rufibach, Kaspar; Perron, Noelle; Wyss, Daniela; Kuenzler, Cornelia; Prezewowsky, Cornelia; Pitman, Roger K; Rufer, Michael

    2012-12-30

    Dissociative disorders are frequent comorbid conditions of other mental disorders. Yet, there is controversy about their clinical relevance, and little systematic research has been done on how they influence global functioning. Outpatients and day care patients (N=160) of several psychiatric units in Switzerland were assessed with the Structured Clinical Interview for Diagnostic and Statistical Manual of Mental Disorders (DSM)-IV Axis I Disorders, Structured Clinical Interview for DSM-IV Dissociative Disorders, Global Assessment of Functioning Scale, and World Health Organization Disability Assessment Schedule-II. The association between subjects with a dissociative disorder (N=30) and functional impairment after accounting for non-dissociative axis I disorders was evaluated by linear regression models. We found a proportion of 18.8% dissociative disorders (dissociative amnesia=0%, dissociative fugue=0.6%, depersonalization disorder=4.4%, dissociative identity disorder=7.5%, dissociative disorder-not-otherwise-specified=6.3%) across treatment settings. Adjusted for other axis I disorders, subjects with a comorbid dissociative identity disorder or dissociative disorder-not-otherwise-specified had a median global assessment of functioning score that was 0.86 and 0.88 times, respectively, the score of subjects without a comorbid dissociative disorder. These findings support the hypothesis that complex dissociative disorders, i.e., dissociative identity disorder and dissociative disorder-not-otherwise-specified, contribute to functional impairment above and beyond the impact of co-existing non-dissociative axis I disorders, and that they qualify as "serious mental illness".

  17. Predictors of Outcome in Traumatic Brain Injury: New Insight Using Receiver Operating Curve Indices and Bayesian Network Analysis

    PubMed Central

    Zador, Zsolt; Sperrin, Matthew; King, Andrew T.

    2016-01-01

    Background Traumatic brain injury remains a global health problem. Understanding the relative importance of outcome predictors helps optimize our treatment strategies by informing assessment protocols, clinical decisions and trial designs. In this study we establish importance ranking for outcome predictors based on receiver operating indices to identify key predictors of outcome and create simple predictive models. We then explore the associations between key outcome predictors using Bayesian networks to gain further insight into predictor importance. Methods We analyzed the corticosteroid randomization after significant head injury (CRASH) trial database of 10008 patients and included patients for whom demographics, injury characteristics, computer tomography (CT) findings and Glasgow Outcome Scale (GCS) were recorded (total of 13 predictors, which would be available to clinicians within a few hours following the injury in 6945 patients). Predictions of clinical outcome (death or severe disability at 6 months) were performed using logistic regression models with 5-fold cross validation. Predictive performance was measured using standardized partial area (pAUC) under the receiver operating curve (ROC) and we used Delong test for comparisons. Variable importance ranking was based on pAUC targeted at specificity (pAUCSP) and sensitivity (pAUCSE) intervals of 90–100%. Probabilistic associations were depicted using Bayesian networks. Results Complete AUC analysis showed very good predictive power (AUC = 0.8237, 95% CI: 0.8138–0.8336) for the complete model. Specificity focused importance ranking highlighted age, pupillary, motor responses, obliteration of basal cisterns/3rd ventricle and midline shift. Interestingly when targeting model sensitivity, the highest-ranking variables were age, severe extracranial injury, verbal response, hematoma on CT and motor response. Simplified models, which included only these key predictors, had similar performance (pAUCSP = 0

  18. Anatomical curve identification

    PubMed Central

    Bowman, Adrian W.; Katina, Stanislav; Smith, Joanna; Brown, Denise

    2015-01-01

    Methods for capturing images in three dimensions are now widely available, with stereo-photogrammetry and laser scanning being two common approaches. In anatomical studies, a number of landmarks are usually identified manually from each of these images and these form the basis of subsequent statistical analysis. However, landmarks express only a very small proportion of the information available from the images. Anatomically defined curves have the advantage of providing a much richer expression of shape. This is explored in the context of identifying the boundary of breasts from an image of the female torso and the boundary of the lips from a facial image. The curves of interest are characterised by ridges or valleys. Key issues in estimation are the ability to navigate across the anatomical surface in three-dimensions, the ability to recognise the relevant boundary and the need to assess the evidence for the presence of the surface feature of interest. The first issue is addressed by the use of principal curves, as an extension of principal components, the second by suitable assessment of curvature and the third by change-point detection. P-spline smoothing is used as an integral part of the methods but adaptations are made to the specific anatomical features of interest. After estimation of the boundary curves, the intermediate surfaces of the anatomical feature of interest can be characterised by surface interpolation. This allows shape variation to be explored using standard methods such as principal components. These tools are applied to a collection of images of women where one breast has been reconstructed after mastectomy and where interest lies in shape differences between the reconstructed and unreconstructed breasts. They are also applied to a collection of lip images where possible differences in shape between males and females are of interest. PMID:26041943

  19. Exposing shame in dancers and athletes: shame, trauma, and dissociation in a nonclinical population.

    PubMed

    Thomson, Paula; Jaque, S Victoria

    2013-01-01

    The relationship between shame, past traumatic events, and dissociation in a nonclinical university and community sample of pre-professional/professional dancers (n = 140) and recreational/competitive athletes (n = 99) was investigated in this cross-sectional study, which was approved by an institutional review board. Participants completed 3 self-report measures (i.e., the Dissociative Experiences Scale, Internalized Shame Scale, Traumatic Events Questionnaire), and the analyses included correlation, multivariate analysis of variance, and a series of regression analyses. The investigation indicated that dancers had increased shame and dissociation in comparison to athletes, and males had more traumatic experiences and increased dissociation relative to females. In the regression analyses, being a dancer, traumatic experiences, and shame predicted dissociation. Clinical recommendations include integrating shame treatment with dissociative-disordered patients and noting that dancers may need more psychological skill training to manage shame and dissociation.

  20. Dissociative amnesia in dissociative disorders and borderline personality disorder: self-rating assessment in a college population.

    PubMed

    Sar, Vedat; Alioğlu, Firdevs; Akyuz, Gamze; Karabulut, Sercan

    2014-01-01

    Dissociative amnesia (DA) among subjects with a dissociative disorder and/or borderline personality disorder (BPD) recruited from a nonclinical population was examined. The Steinberg Dissociative Amnesia Questionnaire (SDAQ), the Childhood Trauma Questionnaire, and the self-report screening tool of the BPD section of the Structured Clinical Interview for DSM-IV(SCID-BPD) were administered to 1,301 college students. A total of 80 participants who were diagnosed with BPD according to the clinician-administered SCID-BPD and 111 nonborderline controls were evaluated using the Structured Clinical Interview for DSM-IV Dissociative Disorders (SCID-D) by a psychiatrist blind to diagnosis and scale scores. Internal consistency analyses and test-retest evaluations suggested that the SDAQ is a reliable instrument for the population studied. Of the participants, 20.6% reported an SDAQ score of 20 or above and impairment by DA. Those who had both dissociative disorder and BPD (n = 78) had the highest SDAQ scores. Both disorders had significant effects on the SCID-D total and amnesia scores in the variance analysis. On SDAQ scores, however, only BPD had this effect. There was a significant interaction between the 2 disorders for the SCID-D total but not for the SDAQ or SCID-D amnesia scores. BPD represented the severity of dissociation and childhood trauma in this study group. However, in contrast to the dissociative disorders, BPD was characterized by better awareness of DA in self-report. The discrepancies between self-report and clinical interview associated with BPD and dissociative disorders are discussed in the context of betrayal theory (J. J. Freyd, 1994) of BPD and perceptual theory (D. B. Beere, 2009) of dissociative disorders.

  1. Dissociative experiences and dissociative minds: Exploring a nomological network of dissociative functioning.

    PubMed

    Schimmenti, Adriano

    2016-01-01

    In this study, the psychometric properties of the Dissociative Experiences Scale-II (DES-II) were tested in a sample of Italian adults, and a nomological network of dissociative functioning based on current psychodynamic research was examined. A total of 794 participants (55% females) ranging in age from 18 to 64 completed the DES-II and other measures of theory of mind, alexithymia, attachment style, and empathy. The Italian translation of the DES-II showed high internal consistency, adequate item-to-scale homogeneity, and good split-half reliability. A single-factor solution including the 8 items of pathological dissociation (DES-T) adequately fit the data. Participants who reported higher levels of dissociative experiences showed significantly lower scores on theory of mind and empathy than other participants. They also showed significantly higher scores on alexithymia, preoccupied attachment, and fearful attachment. Results of the study support the view that people who suffer from severe dissociative experiences may also have difficulties mentalizing and regulating affects and that they may feel uncomfortable in close relationships because they have a negative view of the self. This can inform clinical work with dissociative individuals, who could benefit from therapies that consider their potential problems with mentalization, empathy, affect regulation, and attachment.

  2. Memories of attachment hamper EEG cortical connectivity in dissociative patients.

    PubMed

    Farina, Benedetto; Speranza, Anna Maria; Dittoni, Serena; Gnoni, Valentina; Trentini, Cristina; Vergano, Carola Maggiora; Liotti, Giovanni; Brunetti, Riccardo; Testani, Elisa; Della Marca, Giacomo

    2014-08-01

    In this study, we evaluated cortical connectivity modifications by electroencephalography (EEG) lagged coherence analysis, in subjects with dissociative disorders and in controls, after retrieval of attachment memories. We asked thirteen patients with dissociative disorders and thirteen age- and sex-matched healthy controls to retrieve personal attachment-related autobiographical memories through adult attachment interviews (AAI). EEG was recorded in the closed eyes resting state before and after the AAI. EEG lagged coherence before and after AAI was compared in all subjects. In the control group, memories of attachment promoted a widespread increase in EEG connectivity, in particular in the high-frequency EEG bands. Compared to controls, dissociative patients did not show an increase in EEG connectivity after the AAI. Conclusions: These results shed light on the neurophysiology of the disintegrative effect of retrieval of traumatic attachment memories in dissociative patients.

  3. Quantitative analysis of electrophoresis data: novel curve fitting methodology and its application to the determination of a protein-DNA binding constant.

    PubMed

    Shadle, S E; Allen, D F; Guo, H; Pogozelski, W K; Bashkin, J S; Tullius, T D

    1997-02-15

    A computer program, GelExplorer, which uses a new methodology for obtaining quantitative information about electrophoresis has been developed. It provides a straightforward, easy-to-use graphical interface, and includes a number of features which offer significant advantages over existing methods for quantitative gel analysis. The method uses curve fitting with a nonlinear least-squares optimization to deconvolute overlapping bands. Unlike most curve fitting approaches, the data is treated in two dimensions, fitting all the data across the entire width of the lane. This allows for accurate determination of the intensities of individual, overlapping bands, and in particular allows imperfectly shaped bands to be accurately modeled. Experiments described in this paper demonstrate empirically that the Lorentzian lineshape reproduces the contours of an individual gel band and provides a better model than the Gaussian function for curve fitting of electrophoresis bands. Results from several fitting applications are presented and a discussion of the sources and magnitudes of uncertainties in the results is included. Finally, the method is applied to the quantitative analysis of a hydroxyl radical footprint titration experiment to obtain the free energy of binding of the lambda repressor protein to the OR1 operator DNA sequence.

  4. Modeling dissociation of hydrate bearing sediments under shear

    NASA Astrophysics Data System (ADS)

    Lin, J. S.; Choi, J. H.; Seol, Y.; Rutqvist, J.

    2015-12-01

    To assess the stability of ground during gas production from hydrate bearing sediments, it is of fundamental importance that the constitutive model employed and the computational procedure adopted are capable and accurate. One way to establish credence is to investigate if observation from laboratory tests could be reproduced in analysis. From this consideration, this study modeled laboratory triaxial tests in which hydrate dissociation was induced when a certain level of shear stress was reached. During the dissociation, however, both the axial and the confining stresses were kept unchanged. There were basically two scenarios observed: If the applied shear stress was higher than the shear strength of the hydrate free host soil, failure would take place during the dissociation; otherwise the sample would remain stable. The dissociation was induced either by a temperature raise or through pore pressure reduction. To model such tests, a coupled procedure was employed: the geomechanical analysis was conducted in FLAC3D, and the multiphase flow was conducted in TOUGH+. In this study, an SMP critical state constitutive model was implemented in the FLAC3D. This study successfully reproduced the observation from the laboratory tests. It showed that if the dissociation was caused by temperature change alone, failure would take place during dissociation. On the other hand, the modeling results also showed that if the dissociation was induced by pressure reduction, a sample could remain stable during dissociation because the effective confining stress was raised, but it would fail afterwards when the pre-association fluid pressure was allowed to return and the pace of hydrate reformation lagged behind.

  5. Multipole storage assisted dissociation, a novel in-source dissociation technique for electrospray ionization generated ions.

    PubMed

    Sannes-Lowery, K; Griffey, R H; Kruppa, G H; Speir, J P; Hofstadler, S A

    1998-01-01

    In this work we present a novel in-source dissociation scheme referred to as multipole storage assisted dissociation (MSAD) for electrospray ionization (ESI) generated ions in which dissociation is effected by employing extended ion accumulation intervals in a high pressure rf-only hexapole assembly prior to mass analysis. Following an extended ion accumulation interval in which ions are confined in the rf-only hexapole, ions are gated out of the hexapole, trapped, and mass analyzed in the trapped ion cell of a Fourier transform ion cyclotron resonance (FTICR) mass spectrometer. The accumulation region is comprised of an rf-only hexapole ion guide which separates two electrodes, a biased skimmer cone, and an auxiliary 'gate' electrode at the low pressure end of the hexapole. This technique should be applicable to other mass spectrometry platforms compatible with pulsed ionization sources including quadrupole ion traps, and time-of-flight mass analyzers. This concept is demonstrated with the dissociation of a small protein in which selective fragmentation is observed at labile amino acid linkages producing primarily y-type fragment ions.

  6. Determination of whole blood and plasma viscosity in term neonates by flow curve analysis with the LS300 viscometer1.

    PubMed

    Kuss, N; Bauknecht, E; Felbinger, C; Gehm, J; Gehm, L; Pöschl, J; Ruef, P

    2015-10-01

    Determination of shear stresses at given shear rates allow approximation of flow curves by mathematical models and to calculate viscosities of non-Newtonian fluids. In term neonates, the mean arterial blood pressure (MAP) is markedly below that of adults, therefore rheological properties of blood play an important role in maintaining perfusion. Whole blood viscosity was measured in umbilical cord blood taken from 62 term neonates using the LS 300 viscometer. Individual parameters that influence the viscosity of whole blood were measured: red blood cell (RBC) aggregation, plasma viscosity, hematocrit, and RBC deformability. The flow curve of whole blood of neonates was approximated by the method of Ostwald with the highest quality whereas in adults the best approximation was found by the method of Casson. With hematocrits of 0.40, the viscosity of whole blood in newborns approximated by Ostwald (9.84 ± 5.12 mPa·s) was significantly lower than that of adults (15.34 ± 3.01 mPa·s). The aggregation index of the blood of newborns was markedly lower (2.98 ± 2.12) than in adults (14.63 ± 3.50) whereas RBC deformability was higher in neonates. The viscosity of plasma determined by Ostwald revealed a lower exponent (n) in neonates (0.94 ± 022) compared to adults (1.01 ± 0.12) and the viscosity determined by Newton was lower in neonates (1.04 ± 0.16 mPa·s) than in adults (1.19 ± 0.07 mPa·s). The flow curve of neonatal blood which is best approximated by the model of Ostwald emphasizes its important viscous properties necessary for conditions with physiologically low blood pressure. PMID:26444620

  7. Direct Analysis of JV-Curves Applied to an Outdoor-Degrading CdTe Module (Presentation)

    SciTech Connect

    Jordan, D; Kurtz, S.; Ulbrich, C.; Gerber, A.; Rau, U.

    2014-03-01

    We present the application of a phenomenological four parameter equation to fit and analyze regularly measured current density-voltage JV curves of a CdTe module during 2.5 years of outdoor operation. The parameters are physically meaningful, i.e. the short circuit current density Jsc, open circuit voltage Voc and differential resistances Rsc, and Roc. For the chosen module, the fill factor FF degradation overweighs the degradation of Jsc and Voc. Interestingly, with outdoor exposure, not only the conductance at short circuit, Gsc, increases but also the Gsc(Jsc)-dependence. This is well explained with an increase in voltage dependent charge carrier collection in CdTe.

  8. Investigation on non-exchange spring behaviour and exchange spring behaviour: A first order reversal curve analysis

    NASA Astrophysics Data System (ADS)

    Roy, Debangsu; Sreenivasulu, K. V.; Anil Kumar, P. S.

    2013-11-01

    The First Order Reversal Curve (FORC) method has been utilised to understand the magnetization reversal and the extent of the irreversible magnetization of the soft CoFe2O4-hard SrFe12O19 nanocomposite in the nonexchange spring and the exchange spring regime. The single peak switching behaviour in the FORC distribution of the exchange spring composite confirms the coherent reversal of the soft and hard phases. The onset of the nucleation field and the magnetization reversal by domain wall movement are also evident from the FORC measurements.

  9. Arbitrarily Curved and Twisted Space Beams. Ph.D. Thesis - Va. Polytech. Inst. and State Univ.; [Elastic Deformation, Stress Analysis

    NASA Technical Reports Server (NTRS)

    Hunter, W. F.

    1974-01-01

    A derivation of the equations which govern the deformation of an arbitrarily curved and twisted space beam is presented. These equations differ from those of the classical theory in that (1) extensional effects are included; (2) the strain-displacement relations are derived; and (3) the expressions for the stress resultants are developed from the strain displacement relations. It is shown that the torsional stress resultant obtained by the classical approach is basically incorrect except when the cross-section is circular. The governing equations are given in the form of first-order differential equations. A numerical algorithm is given for obtaining the natural vibration characteristics and example problems are presented.

  10. Combined Pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ–labeled phosphopeptides

    PubMed Central

    Yang, Feng; Wu, Si; Stenoien, David L.; Zhao, Rui; Monroe, Matthew E.; Gristenko, Marina A.; Purvine, Samuel O.; Polpitiya, Ashoka D.; Tolić, Nikola; Zhang, Qibin; Norbeck, Angela D.; Orton, Daniel J.; Moore, Ronald J.; Tang, Keqi; Anderson, Gordon A.; Paša-Tolić, Ljiljana; Camp, David G.; Smith, Richard D.

    2009-01-01

    Here, we report a new approach that integrates pulsed Q dissociation (PQD) and electron transfer dissociation (ETD) techniques for confident and quantitative identification of iTRAQ-labeled phosphopeptides. The use of isobaric tags for relative and absolute quantification enables a high-throughput quantification of peptides via reporter ion signals in the low m/z range of tandem mass spectra. PQD, a form of ion trap collision activated dissociation allows for detection of low mass-to-charge fragment ions and electron transfer dissociation is especially useful for sequencing peptides that contain post-translational modifications. Analysis of the phosphoproteome of human fibroblast cells using a sensitive linear ion trap mass spectrometer demonstrated that this hybrid approach improves both identification and quantification of phosphopeptides. ETD improved phosphopeptide identification, while PQD provides improved quantification of iTRAQ-labeled phosphopeptides. PMID:19371082

  11. Flow Curve Determination at Large Plastic Strain Levels: Limitations of the Membrane Theory in the Analysis of the Hydraulic Bulge Test

    NASA Astrophysics Data System (ADS)

    Lemoine, X.; Iancu, A.; Ferron, G.

    2011-05-01

    Nowadays, an accurate determination of the true stress-strain curve is a key-element for all finite element (FE) forming predictions. Since the introduction of Advanced High Strength Steels (AHSS) for the automotive market, the standard uniaxial tension test suffers the drawback of relatively low uniform elongations. The extrapolation of the uniaxial stress-strain curve up to large strains is not without consequence in forming predictions—especially formability and springback. One of the means to solve this problem is to use experimental tests where large plastic strain levels can be reached. The hydraulic bulge test is one of these tests. The effective plastic strain levels reached in the bulge test are of about 0.7. From an experimental standpoint, the biaxial flow stress is estimated using measurement of fluid pressure, and calculation of thickness and curvature at the pole, via appropriate measurements and assumptions. The biaxial stress at the pole is determined using the membrane equilibrium equation. The analysis proposed in this paper consists of performing "virtual experiments" where the results obtained by means of FE calculations are used as input data for determining the biaxial stress-strain law in agreement with the experimental procedure. In this way, a critical discussion of the experimental procedure can be made, by comparing the "experimental" stress-strain curve (Membrane theory curve) with the "reference" one introduced in the simulations. In particular, the influences of the "(die diameter)/thickness" ratio and of the plastic anisotropy are studied, and limitations of the hydraulic bulge test analysis are discussed.

  12. Ion mobility spectrometry nuisance alarm threshold analysis for illicit narcotics based on environmental background and a ROC-curve approach.

    PubMed

    Forbes, Thomas P; Najarro, Marcela

    2016-07-21

    The discriminative potential of an ion mobility spectrometer (IMS) for trace detection of illicit narcotics relative to environmental background was investigated with a receiver operating characteristic (ROC) curve framework. The IMS response of cocaine, heroin, methamphetamine, 3,4-methylenedioxymethamphetamine (MDMA), and Δ(9)-tetrahydro-cannabinol (THC) was evaluated against environmental background levels derived from the screening of incoming delivery vehicles at a federal facility. Over 20 000 samples were collected over a multiyear period under two distinct sets of instrument operating conditions, a baseline mode and an increased desorption/drift tube temperature and sampling time mode. ROC curves provided a quantifiable representation of the interplay between sensitivity (true positive rate, TPR) and specificity (1 - false positive rate, FPR). A TPR of 90% and minimized FPR were targeted as the detection limits of IMS for the selected narcotics. MDMA, THC, and cocaine demonstrated single nanogram sensitivity at 90% TPR and <10% FPR, with improvements to both MDMA and cocaine in the elevated temperature/increased sampling mode. Detection limits in the tens of nanograms with poor specificity (FPR ≈ 20%) were observed for methamphetamine and heroin under baseline conditions. However, elevating the temperature reduced the background in the methamphetamine window, drastically improving its response (90% TPR and 3.8% FPR at 1 ng). On the contrary, the altered mode conditions increased the level of background for THC and heroin, partially offsetting observed enhancements to desorption. The presented framework demonstrated the significant effect environmental background distributions have on sensitivity and specificity.

  13. An Exploratory Analysis of Personality, Attitudes, and Study Skills on the Learning Curve within a Team-based Learning Environment

    PubMed Central

    Henry, Teague; Campbell, Ashley

    2015-01-01

    Objective. To examine factors that determine the interindividual variability of learning within a team-based learning environment. Methods. Students in a pharmacokinetics course were given 4 interim, low-stakes cumulative assessments throughout the semester and a cumulative final examination. Students’ Myers-Briggs personality type was assessed, as well as their study skills, motivations, and attitudes towards team-learning. A latent curve model (LCM) was applied and various covariates were assessed to improve the regression model. Results. A quadratic LCM was applied for the first 4 assessments to predict final examination performance. None of the covariates examined significantly impacted the regression model fit except metacognitive self-regulation, which explained some of the variability in the rate of learning. There were some correlations between personality type and attitudes towards team learning, with introverts having a lower opinion of team-learning than extroverts. Conclusion. The LCM could readily describe the learning curve. Extroverted and introverted personality types had the same learning performance even though preference for team-learning was lower in introverts. Other personality traits, study skills, or practice did not significantly contribute to the learning variability in this course. PMID:25861101

  14. Ion mobility spectrometry nuisance alarm threshold analysis for illicit narcotics based on environmental background and a ROC-curve approach.

    PubMed

    Forbes, Thomas P; Najarro, Marcela

    2016-07-21

    The discriminative potential of an ion mobility spectrometer (IMS) for trace detection of illicit narcotics relative to environmental background was investigated with a receiver operating characteristic (ROC) curve framework. The IMS response of cocaine, heroin, methamphetamine, 3,4-methylenedioxymethamphetamine (MDMA), and Δ(9)-tetrahydro-cannabinol (THC) was evaluated against environmental background levels derived from the screening of incoming delivery vehicles at a federal facility. Over 20 000 samples were collected over a multiyear period under two distinct sets of instrument operating conditions, a baseline mode and an increased desorption/drift tube temperature and sampling time mode. ROC curves provided a quantifiable representation of the interplay between sensitivity (true positive rate, TPR) and specificity (1 - false positive rate, FPR). A TPR of 90% and minimized FPR were targeted as the detection limits of IMS for the selected narcotics. MDMA, THC, and cocaine demonstrated single nanogram sensitivity at 90% TPR and <10% FPR, with improvements to both MDMA and cocaine in the elevated temperature/increased sampling mode. Detection limits in the tens of nanograms with poor specificity (FPR ≈ 20%) were observed for methamphetamine and heroin under baseline conditions. However, elevating the temperature reduced the background in the methamphetamine window, drastically improving its response (90% TPR and 3.8% FPR at 1 ng). On the contrary, the altered mode conditions increased the level of background for THC and heroin, partially offsetting observed enhancements to desorption. The presented framework demonstrated the significant effect environmental background distributions have on sensitivity and specificity. PMID:27206280

  15. CONSTRUCTION OF AN EARTH MODEL: ANALYSIS OF EXOPLANET LIGHT CURVES AND MAPPING THE NEXT EARTH WITH THE NEW WORLDS OBSERVER

    SciTech Connect

    Oakley, P. H. H.; Cash, W.

    2009-08-01

    The orbital light curve of a terrestrial exoplanet will likely contain valuable information about the surface and atmospheric features of the planet, both in its overall shape and hourly variations. We have constructed an empirically based code capable of simulating observations of the Earth from any orientation, at any time of year with continuously updated cloud and snow coverage with a New Worlds Observatory. By simulating these observations over a full orbital revolution at a distance of 10 pc we determine that the detection of an obliquity or seasonal terrain change is possible at low inclinations. In agreement with other studies, a 4 m New Worlds Observer can accurately determine the rotation rate of the planet at a success rate from {approx}30% to 80% with only 5 days of observations depending on the signal to noise of the observations. We also attempt simple inversions of these diurnal light curves to sketch a map of the reflecting planet's surface features. This mapping technique is only successful with highly favorable systems and in particular requires that the cloud coverage must be lower than the Earth's average. Our test case of a 2 M {sub +} planet at 7 pc distance with low exo-zodiacal light and 25% cloud coverage produced crude, but successful results. Additionally, with these highly favorable systems NWO may be able to discern the presence of liquid surface water (or other smooth surfaces) though it requires a complex detection available only at crescent phases in high inclination systems.

  16. Analysis of MOST light curves of five young stars in Taurus-Auriga and Lupus 3 star-forming regions

    NASA Astrophysics Data System (ADS)

    Siwak, Michal; Rucinski, Slavek M.; Matthews, Jaymie M.; Kuschnig, Rainer; Guenther, David B.; Moffat, Anthony F. J.; Sasselov, Dimitar; Weiss, Werner W.

    2011-08-01

    Continuous photometric observations of five young stars obtained by the MOST satellite in 2009 and 2010 in the Taurus and Lupus star formation regions are presented. Using light-curve modelling under the assumption of internal invariability of spots, we obtained small values of the solar-type differential-rotation parameter (k = 0.0005-0.009) for three spotted weak-line T Tauri stars, V410 Tau, V987 Tau and Lupus 3-14; for another spotted weak-line T Tauri star (WTTS), Lupus 3-48, the data are consistent with a rigidly rotating surface (k = 0). Three flares of similar rise (4 min and 30 s) and decay (1 h and 45 min) times were detected in the light curve of Lupus 3-14. The brightness of the classical T Tauri star RY Tau continuously decreased over 3 weeks of its observations with a variable modulation not showing any obvious periodic signal. Based on data from the MOST satellite, a Canadian Space Agency mission, jointly operated by Dynacon Inc., the University of Toronto Institute of Aerospace Studies and the University of British Columbia, with the assistance of the University of Vienna.

  17. Dissociation of F-actin induced by hydrostatic pressure.

    PubMed

    Garcia, C R; Amaral Júnior, J A; Abrahamsohn, P; Verjovski-Almeida, S

    1992-11-01

    F-actin purified from rabbit skeletal muscle undergoes reversible dissociation when subjected to hydrostatic pressures up to 240 MPa. Dissociation and reversibility were detected by the following procedures: fluorescence spectral changes observed under pressure, when either intrinsic tryptophan or pyrenyl emission of N-(1-pyrenyl)iodoacetamide-labeled actin were monitored; electron microscopy of samples fixed under pressure; size-exclusion HPLC of pressurized actin. The effect of pressure upon F-actin that had been polymerized in the presence of either Mg2+, Ca2+ or K+ was studied. The standard volume changes for the association of actin subunits, calculated from pressure/dissociation curves were 74 +/- 14 ml/mol for Mg-F-actin, 79 +/- 12 ml/mol for Ca-F-actin and 328 +/- 63 ml/mol for K-F-actin, indicating that actin subunits are packed differently in the polymer depending on which cation is present. All pressure/dissociation data could be fitted by a model for dissociation of a dimer, which suggests that in the F-actin filament there is a predominant intersubunit interaction interface, most likely the head-to-tail intrastrand interaction between two subunits which repeats itself along the polymer. A tenfold change in total protein concentration from 20 micrograms to 200 micrograms/ml Mg-F-actin did not cause a change in the pressure required for half-maximal dissociation. This indicates a heterogeneity of free energy of association among actin monomers in the Mg-F-actin polymer, suggesting that, in addition to the predominant intersubunit interaction, the disordered interactions in the filament significantly contribute to the heterogeneity of microenvironments in the interface between the subunits. PMID:1425683

  18. Detection of a knockdown resistance mutation associated with permethrin resistance in the body louse Pediculus humanus corporis by use of melting curve analysis genotyping.

    PubMed

    Drali, Rezak; Benkouiten, Samir; Badiaga, Sékéné; Bitam, Idir; Rolain, Jean Marc; Brouqui, Philippe

    2012-07-01

    Louse-borne diseases are prevalent in the homeless, and body louse eradication has thus far been unsuccessful in this population. We aim to develop a rapid and robust genotyping method usable in large field-based clinical studies to monitor permethrin resistance in the human body louse Pediculus humanus corporis. We assessed a melting curve analysis genotyping method based on real-time PCR using hybridization probes to detect the M815I-T917I-L920F knockdown resistance (kdr) mutation in the paraorthologous voltage-sensitive sodium channel (VSSC) α subunit gene, which is associated with permethrin resistance. The 908-bp DNA fragment of the VSSC gene, encoding the α subunit of the sodium channel and encompassing the three mutation sites, was PCR sequenced from 65 lice collected from a homeless population. We noted a high prevalence of the 3 indicated mutations in the body lice collected from homeless people (100% for the M815I and L920F mutations and 56.73% for the T917I mutation). These results were confirmed by melting curve analysis genotyping, which had a calculated sensitivity of 100% for the M815I and T917I mutations and of 98% for the L920F mutation. The specificity was 100% for M815I and L920F and 96% for T917I. Melting curve analysis genotyping is a fast, sensitive, and specific tool that is fully compatible with the analysis of a large number of samples in epidemiological surveys, allowing the simultaneous genotyping of 96 samples in just over an hour (75 min). Thus, it is perfectly suited for the epidemiological monitoring of permethrin resistance in human body lice in large-scale clinical studies. PMID:22573588

  19. Multiphoton dissociative ionization of CS+

    NASA Astrophysics Data System (ADS)

    Rajput, Jyoti; Jochim, Bethany; Zohrabi, M.; Betsch, K. J.; Ablikim, U.; Berry, Ben; Severt, T.; Summers, A. M.; Armstrong, G. S. J.; Esry, B. D.; Carnes, K. D.; Ben-Itzhak, I.

    2015-05-01

    We have studied the dissociative photoionization of a CS+ molecular ion beam in the strong-field regime using <50 fs IR laser pulses (λ ~ 790 nm) from a 10 kHz, ~2 mJ (per pulse) Ti:Sapphire laser system. A coincidence three-dimensional momentum imaging method was used to measure all ions and neutrals formed during this multiphoton process. Two prominent channels were observed: charge-symmetric dissociation, yielding C+ + S+, and charge-asymmetric dissociation, yielding C + S2+. The differences between these two channels with reference to their relative production probability, energetics, and angular distributions is the focus of this work. This work was supported by the Chemical Sciences, Geosciences, and Biosciences Division, Office of Basic Energy Sciences, Office of Science, U.S. Department of Energy. BJ is also supported by DOE-SCGF (DE-AC05-06OR23100).

  20. Dissociative and double photoionization of CO2 from threshold to 90 A

    NASA Technical Reports Server (NTRS)

    Masuoka, T.; Samson, J. A. R.

    1979-01-01

    The molecular photoionization, dissociative photoionization and double photoionization cross sections for CO2 were measured from their onsets down to 90 A by using various combinations of mass spectrometers (a coincidence time-of-flight mass spectrometer and a magnetic mass spectrometer) and light sources (synchrotron radiation, and glow and spark discharge). It is concluded that the one broad peak and the three shoulders in the total adsorption cross section curve between 640 and 90 A are caused completely by dissociative ionization processes. Several peaks observed in the cross section curve for the total fragmentation CO(+)3, O(+) and C(+) are compared with those in the photoelectron spectrum reported for CO2.