Genomewide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation

PubMed Central

Westholm, Jakub O.; Miura, Pedro; Olson, Sara; Shenker, Sol; Joseph, Brian; Sanfilippo, Piero; Celniker, Susan E.; Graveley, Brenton R.; Lai, Eric C.

2014-01-01

Circularization was recently recognized to broadly expand transcriptome complexity. Here, we exploit massive Drosophila total RNA-sequencing data, >5 billion paired-end reads from >100 libraries covering diverse developmental stages, tissues and cultured cells, to rigorously annotate >2500 fruitfly circular RNAs. These mostly derive from back-splicing of protein-coding genes and lack poly(A) tails, and circularization of hundreds of genes is conserved across multiple Drosophila species. We elucidate structural and sequence properties of Drosophila circular RNAs, which exhibit commonalities and distinctions from mammalian circles. Notably, Drosophila circular RNAs harbor >1000 well-conserved canonical miRNA seed matches, especially within coding regions, and coding conserved miRNA sites reside preferentially within circularized exons. Finally, we analyze the developmental and tissue specificity of circular RNAs, and note their preferred derivation from neural genes and enhanced accumulation in neural tissues. Interestingly, circular isoforms increase dramatically relative to linear isoforms during CNS aging, and constitute a novel aging biomarker. PMID:25544350

Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation

DOE PAGES

Westholm, Jakub  O.; Miura, Pedro; Olson, Sara; ...

2014-11-26

Circularization was recently recognized to broadly expand transcriptome complexity. Here, we exploit massive Drosophila total RNA-sequencing data, >5 billion paired-end reads from >100 libraries covering diverse developmental stages, tissues, and cultured cells, to rigorously annotate >2,500 fruit fly circular RNAs. These mostly derive from back-splicing of protein-coding genes and lack poly(A) tails, and the circularization of hundreds of genes is conserved across multiple Drosophila species. We elucidate structural and sequence properties of Drosophila circular RNAs, which exhibit commonalities and distinctions from mammalian circles. Notably, Drosophila circular RNAs harbor >1,000 well-conserved canonical miRNA seed matches, especially within coding regions, and codingmore » conserved miRNA sites reside preferentially within circularized exons. Finally, we analyze the developmental and tissue specificity of circular RNAs and note their preferred derivation from neural genes and enhanced accumulation in neural tissues. Interestingly, circular isoforms increase substantially relative to linear isoforms during CNS aging and constitute an aging biomarker.« less

Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Westholm, Jakub  O.; Miura, Pedro; Olson, Sara

Circularization was recently recognized to broadly expand transcriptome complexity. Here, we exploit massive Drosophila total RNA-sequencing data, >5 billion paired-end reads from >100 libraries covering diverse developmental stages, tissues, and cultured cells, to rigorously annotate >2,500 fruit fly circular RNAs. These mostly derive from back-splicing of protein-coding genes and lack poly(A) tails, and the circularization of hundreds of genes is conserved across multiple Drosophila species. We elucidate structural and sequence properties of Drosophila circular RNAs, which exhibit commonalities and distinctions from mammalian circles. Notably, Drosophila circular RNAs harbor >1,000 well-conserved canonical miRNA seed matches, especially within coding regions, and codingmore » conserved miRNA sites reside preferentially within circularized exons. Finally, we analyze the developmental and tissue specificity of circular RNAs and note their preferred derivation from neural genes and enhanced accumulation in neural tissues. Interestingly, circular isoforms increase substantially relative to linear isoforms during CNS aging and constitute an aging biomarker.« less

UBVRI polarimetry of AM Herculis-type binaries. 5: The asynchronous (?) polar BY Camelopardalis (H0538+608)

NASA Astrophysics Data System (ADS)

Piirola, V.; Coyne, G. V.; Takalo, S. J.; Takalo, L.; Larsson, S.; Vilhu, O.

1994-03-01

The basic features of the light and circular polarization curves of BY Cam in 1990 Sep can be reproduced by a model with the inclination i = 40-60 deg of the magnetic white dwarf spin axis and two extended emission regions: a strong positive circular polarization region at the colatitude beta = 30-45 deg and a weaker negative circular polarization region at beta = 100-125 deg with a phase lag of about 0.5. The degree of linear polarization was small (approximately less than 1 %), but the observed position angle pattern is roughly consistent with the above geometric picture. However, in November 1990 the reduced amplitude of the position angle curve, and the self-eclipsing-type light curves with distinct bright and faint phases, suggest higher inclination (i approximately 85 deg). Precession with a period of 100-150 days is offered as a hypothetical mechanism for changing the inclination. Timings for the transit of the positive circular polarization region from 1992 Nov and 1993 Jan appear approximately 0.3 phase later than predicted from our linear ephemeris based on data from the time interval JD2446138-8155, indicating a possible period increase of dP/dt approximately 3.3 x 10-4, and a synchronization time scale of approximately 1200 y. This is longer than found for the only well established re-synchronizing magnetic binary V1500 Cyg (approximately 185 y). Further timings are needed to confirm and improve the rotational period of the magnetic white dwarf in BY Cam.

Research on recognition of the geologic framework of porphyry copper deposits on ERTS-1 imagery. [New Guinea, Alaska, and Colorado

NASA Technical Reports Server (NTRS)

Wilson, J. C. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Many new linear and circular features were found. These features prompted novel tectonic classification and analysis especially in the Ray and Ely areas. Tectonic analyses of the Ok Tedi, Tanacross, and Silvertone areas follow conventional interpretations. Circular features are mapped in many cases and are interpreted as exposed or covered intrusive centers. The small circular features reported in the Ok Tedi test area are valid and useful correlations with tertiary intrusion and volcanism in this remote part of New Guinea. Several major faults of regional dimensions, such as the Denali fault in Alaska and the Colorado mineral belt structures in Colorado are detected in the imagery. Many more faults and regional structures are found in the imagery than exist on present maps.

Wide acceptance angle, high concentration ratio, optical collector

NASA Technical Reports Server (NTRS)

Kruer, Mark Arthur (Inventor)

1990-01-01

The invention is directed to an optical collector requiring a wide acceptance angle, and a high concentration ratio. The invention is particularly adapted for use in solar collectors of cassegrain design. The optical collector system includes a parabolic circular concave primary mirror and a hyperbolic circular convex secondary mirror. The primary mirror includes a circular hole located at its center wherein a solar collector is located. The mirrored surface of the secondary mirror has three distinct zones: a center circle, an on-axis annulus, and an off-axis section. The parabolic shape of the primary mirror is chosen so that the primary mirror reflects light entering the system on-axis onto the on-axis annulus. A substantial amount of light entering the system off-axis is reflected by the primary mirror onto either the off-axis section or onto the center circle. Subsequently, the off-axis sections reflect the off-axis light toward the solar collector. Thus, off-axis light is captured which would otherwise be lost to the system. The novelty of the system appears to lie in the configuration of the primary mirror which focuses off-axis light onto an annular portion of the secondary mirror to enable capture thereof. This feature results in wide acceptance angle and a high concentration ratio, and also compensates for the effects of non-specular reflection, and enables a cassegrain configuration to be used where such characteristics are required.

Hudson Canyon Offshore New York and New Jersey: Active Circular Depressions, Fans, Ravines, Methane Discharge and Water Masses

NASA Astrophysics Data System (ADS)

Rona, P. A.; Guida, V.; Scranton, M. I.; Gong, D.; Haag, S.; Macelloni, L.; Simonetti, A.; James, J.; Diercks, A.; Asper, V. L.

2009-12-01

We investigated Hudson Canyon from where it begins at the seaward edge of the continental shelf (water depth 100 m) to ~30 km seaward (100-700 m) using high-resolution bathymetry (AUV Eagle Ray; ISE Explorer; EM2000 sonar) and standard oceanographic methods. We find features and processes that create varied distinctive habitats in submarine canyons on passive continental margins, as follows: 1)Sediment conduit: The initial 10 km- long section of the canyon head connects with cross-shelf sediment transport and is smoothed by sediment accumulation indicating that it is presently inactive as a sediment conduit, in contrast to its active role during prior intervals of lowered sea level. 2)Circular depressions: A population of circular depressions with diameters from 50 to 400 m, rim-to-floor relief up to 20 m increasing directly with diameter, flat rough floors and steep walls (15-25 degrees) occur in sediment near the base of both walls of the canyon. The number of circular depressions increases with water depth with one at 325 m in the initial 10 km-long NW-SE section of the canyon, two at 350 m in the next 10 km N-S section, and nineteen at 300 to 500 m at the SW wall of the next 10 km NW-SE section. The sharp shape of the depressions suggests that they are actively forming. Larger circular depressions (diameter <800 m) exhibit different characteristics. 3)Methane chemistry: A methane anomaly (50 nmol) ten times background was measured in August 2008 in the near-bottom water column adjacent to one of the two circular depressions in the middle canyon section. In August 2009 water samples were recovered at other circular depressions and are being analyzed to test for methane discharge. We suggest that the circular depressions are gas release-collapse features possibly produced by dissociation of underlying gas hydrates. 4)Fans and ravines: Sediment fans with intervening ravines about 1 km apart extend orthogonal to the canyon axis down the two walls of the canyon in the second and third sections. 5)Hydrography: A dynamic system of multiple layers of inter-leaved shelf (cold, fresh) and slope (warm, salty) water masses was observed in the canyon head in summers 2007, 2008 and 2009 and found to produce shifting fronts and strong currents. Dynamic interactions between the hydrography and different terrains create a wide range of habitat conditions in the canyon critical for biodiversity. Enhanced shelf-slope exchange of water masses facilitated by the complex canyon topography may influence adjacent shelf circulation, and impact ecosystems including commercial fish stocks well beyond the canyon. We thank NOAA National Marine Fisheries Service(NMFS), National Institute of Science and Technology (NIUST), and National Undersea Research Program (NURP) for support.

Application of the Geo-Anomaly Unit Concept in Quantitative Delineation and Assessment of Gold Ore Targets in Western Shandong Uplift Terrain, Eastern China

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen Yongqing, E-mail: ydonglai@mail.cgs.gov.cn; Zhao Pengda; Chen Jianguo

2001-03-15

A number of large and giant ore deposits have been discovered within the relatively small areas of lithospheric structure anomalies, including various boundary zones of tectonic plates. The regions have become the well-known intercontinental ore-forming belts, such as the circum-Pacific gold-copper, copper-molybdenum, and tungsten-tin metallogenic belts. These belts are typical geological anomalous areas. An investigation into the hydrothermal ore deposits in different regions in the former Soviet Union illustrated that the geologic structures of ore fields of almost all major commercial deposits have distinct features compared with the neighboring areas. These areas with distinct features are defined as geo-anomalies. Amore » geo-anomaly refers to such a geologic body or a combination of bodies that their composition, texture-structure, and genesis are significantly different from those of their surroundings. A geo-anomaly unit (GU) is an area containing distinct features that can be delineated with integrated ore-forming information using computer techniques on the basis of the geo-anomaly concept. Herein, the GU concept is illustrated by a case study of delineating the gold ore targets in the western Shandong uplift terrain, eastern China. It includes: (1) analyses of gold ore-forming factors; (2) compilation of normalized regional geochemical map and extraction of geochemical anomalies; (3) compilation of gravitational and aeromagnetic tectonic skeleton map and extraction of gravitational and aeromagnetic anomalies; (4) extraction of circular and linear anomalies from remote-sensing Landsat TM images; (5) establishment of a geo-anomaly conceptual model associated with known gold mineralization; (6) establishment of gold ore-forming favorability by computing techniques; and (7) delineation and assessment of ore-forming units. The units with high favorability are suggested as ore targets.« less

X-ray CT and histological imaging of xylem vessels organization in Mimosa pudica.

PubMed

Lee, Sang Joon; Song, Kahye; Kim, Hae Koo; Park, Joonghyuk

2013-11-01

Mimosa pudica has three distinct specialized organs, namely, pulvinus, secondary pulvinus, and pulvinule, which are respectively controlling the movements of petioles, leaflets, and pinna in response to external stimuli. Water flow is a key factor for such movements, but detailed studies on the organization of the vascular system for water transport in these organs have not been published yet. In this study, organizations of the xylem vessels and morphological features of the pulvinus, the secondary pulvinus, and the pulvinule were experimentally investigated by X-ray computed tomography and histological technique. Results showed that the xylem vessels were circularly distributed in the specialized motile organs and reorganized into distinct vascular bundles at the extremities. The number and the total cross-sectional area of the xylem vessels were increased inside the specialized motile organs. Morphological characteristics obtained in this study provided new insight to understand the functions of the vascular networks in the dynamic movements of M. pudica. Copyright © 2013 Wiley Periodicals, Inc.

Buffered and unbuffered dike emplacement on Earth and Venus - Implications for magma reservoir size, depth, and rate of magma replenishment

NASA Technical Reports Server (NTRS)

Parfitt, E. A.; Head, J. W., III

1993-01-01

Models of the emplacement of lateral dikes from magma chambers under constant (buffered) driving pressure conditions and declining (unbuffered) driving pressure conditions indicate that the two pressure scenarios lead to distinctly different styles of dike emplacement. In the unbuffered case, the lengths and widths of laterally emplaced dikes will be severely limited and the dike lengths will be highly dependent on chamber size; this dependence suggests that average dike length can be used to infer the dimensions of the source magma reservoir. On Earth, the characteristics of many mafic-dike swarms suggest that they were emplaced in buffered conditions (e.g., the Mackenzie dike swarm in Canada and some dikes within the Scottish Tertiary). On Venus, the distinctive radial fractures and graben surrounding circular to oval features and edifices on many size scales and extending for hundreds to over a thousand km are candidates for dike emplacement in buffered conditions.

Specific features of the circular dichroism of a chiral photonic crystal with a defect layer inside in the presence of a gain

NASA Astrophysics Data System (ADS)

Gevorgyan, A. H.

2017-01-01

The specific features of the circular dichroism (CD) spectra of a cholesteric liquid crystal (CLC) layer with a defect layer inside in the presence of gain have been investigated. The features of the dependence of CD on the parameter characterizing the gain on the defect mode are analyzed for two cases: (i) gain is present in the defect layer and is absent in the CLC sublayers and (ii) gain is absent in the defect layer but is present in the CLC sublayers. It is shown that these dependences significantly differ in the two aforementioned cases. The dependences of the reflection, transmission, and absorption on the defect mode on the gain parameter have been investigated for incident light with both circular polarizations.

Sulfur volcanoes on Io?

NASA Astrophysics Data System (ADS)

Greeley, R.; Fink, J. H.

1984-07-01

The unusual rheological properties of sulfur are discussed in order to determine the distinctive volcanic flow morphologies which indicate the presence of sulfur volcanoes on the Saturnian satellite Io. An analysis of high resolution Voyager imagery reveals three features which are considered to be possible sulfur volcanoes: Atar Patera, Daedalus Patera, and Kibero Patera. All three features are distinguished by circular-to-oval central masses surrounded by irregular widespread flows. The central zones of the features are interpreted to be domes formed of high temperature sulfur. To confirm the interpretations of the satellite data, molten sulfur was extruded in the laboratory at a temperature of 210 C on a flat surface sloping 0.5 deg to the left. At this temperature, the sulfur formed a viscous domelike mass over the event. As parts of the mass cooled to 170 C the viscosity decreased to a runny stage, forming breakout flows. It is concluded that a case can be made for sulfur volcanoes on Io sufficient to warrant further study, and it is recommended that the upcoming Galileo mission examine these phenomena.

Sulfur volcanoes on Io?

NASA Technical Reports Server (NTRS)

Greeley, R.; Fink, J. H.

1984-01-01

The unusual rheological properties of sulfur are discussed in order to determine the distinctive volcanic flow morphologies which indicate the presence of sulfur volcanoes on the Saturnian satellite Io. An analysis of high resolution Voyager imagery reveals three features which are considered to be possible sulfur volcanoes: Atar Patera, Daedalus Patera, and Kibero Patera. All three features are distinguished by circular-to-oval central masses surrounded by irregular widespread flows. The central zones of the features are interpreted to be domes formed of high temperature sulfur. To confirm the interpretations of the satellite data, molten sulfur was extruded in the laboratory at a temperature of 210 C on a flat surface sloping 0.5 deg to the left. At this temperature, the sulfur formed a viscous domelike mass over the event. As parts of the mass cooled to 170 C the viscosity decreased to a runny stage, forming breakout flows. It is concluded that a case can be made for sulfur volcanoes on Io sufficient to warrant further study, and it is recommended that the upcoming Galileo mission examine these phenomena.

Preliminary Crater Retention Ages for an Expanded Inventory of Large Lunar Basins

NASA Technical Reports Server (NTRS)

Frey, H. V.

2012-01-01

Based on LOLA topography and a new crustal thickness model, the number of candidate lunar basins greater than 300 km in diameter is at least a factor 2 larger than the traditional number based on photogeology alone, and may be as high as 95. Preliminary N(50) crater retention ages for this population of candidate basins shows two distinct peaks. Frey [1] suggested, based on Clementine-era topography (ULCN2005) and a crustal thickness model based on Lunar Prospector data [2], that there could be as many as 98 lunar basins greater than 300 km diameter. Many of the weaker cases have not stood up to recent testing [3,4,5] using LOLA data and a newer crustal thickness model based on Kaguya gravity data and LOLA topography data [6]. As described in companion abstracts [4,5], we have deleted from the earlier inventory 1 more named feature (Sikorsky- Rittenhouse; LOLA data show that its diameter is actually less than 300 km), 11 Quasi-Circular Depressions (QCDs) identified in the ULCN topography, and 11 Circular Thin Areas (CTAs) found in the earlier crustal thickness model [2]. We did this by repeating the scoring exercise originally done in [1] but with the new data [4,5]. Topographic Expression (TE) and Crustal Thickness Expression (CTE) scores were determined for each candidate on a scale of 0 to 5 (5 being a strong, circular signature, 0 for those with no discernible circular topographic or crustal thickness signature). These scores are added together to produce a Summary Score which has a range of 0 to 10. We eliminated all candidates with a Summary Score less than 3, as well as other cases where, for example, the TE went to zero because what looked like a single large circular QCD in the lower resolution ULCN data was in fact a cluster of smaller deep impacts readily apparent in the newer higher resolution LOLA data. This process reduced the original inventory from 98 to 75 candidates.

Coma Morphology Due to an Extended Active Region and Implications for the Spin State of Comet Hale-Bopp

NASA Technical Reports Server (NTRS)

Samarasinha, Nalin H.

2000-01-01

We show that the circular character of continuum structures observed in the coma of comet Hale-Bopp around the perihelion passage is most likely due to a dust jet from a large extended active region on the surface. Coma morphology due to a wide jet is different from that due to a narrow jet. The latter shows foreshortening effects due to observing geometry, wider jet produces more circular features. This circularization effect provides a self-consistent explanation for the evolution of near-perihelion coma morphology. No changes in the direction of the rotational angular momentum vector are required during this period in contrast to the models of Schleicher et al. This circularization effect also enables us to produce near-circular coma features in the S-E quadrant during 1997 late February and therefore questions the basic premise on which Sekanina bases his morphological arguments for a gravitationally bound satellite nucleus.

Elements of the Chicxulub Impact Structure as revealed in SRTM and surface GPS topographic data

NASA Astrophysics Data System (ADS)

Kobrick, M.; Kinsland, G. L.; Sanchez, G.; Cardador, M. H.

2003-04-01

Pope et al have utilized elevations from the Petroleos Mexicanos (PEMEX) gravity data files to show that the main component of the surface expression of the Chicxu-lub Impact Structure is a roughly semi-circular, low-relief depression about 90 km in diameter. They also identified other topographic features and the elements of the buried impact which possibly led to the development of these features. Kinsland et al presented a connection between these topographic anomalies, small gravity anomalies and buried structure of the impact. Shaded relief images from recently acquired SRTM elevation data clearly show the circular depression of the crater and the moat/cenote ring. In addition we can readily identify Inner trough 1, Inner trough 2 and Outer trough as defined by Pope et al. The agreement between the topographic maps of Pope et al, Kinsland et al and SRTM data are remarkable considering that the distribution and types of data in the sets are so different. We also have ground topographic data collected with a special "autonomous differ-ential GPS" system during summer 2002. Profiles from these data generally agree with both the gravity data based topographic maps and profiles extracted from the SRTM data. Preliminary analyses of our new data, SRTM and GPS, have uncovered features not previously recognized: 1) as shown by the GPS data the moat/cenote ring consists of two distinct depressions separated by about 10 km...perhaps separate ring faults, 2) in the SRTM data over the southern part of the crater and on southward for perhaps 20 km beyond the moat/ cenote ring there exists a pattern, as yet unexplained, of roughly concentric topographic features whose center lies at about 21deg 40min N and 89deg 25min W, about 50km NNE of the moat/cenote ring center. The corroboration and better definition of the previously recognized topographic features yielded by the two new forms of data strengthens the cases for these fea-tures and for their relevance to the underlying collapsed crater structure.

Ontogeny of tick hemocytes: a comparative analysis of Ixodes ricinus and Ornithodoros moubata.

PubMed

Borovicková, Barbara; Hypsa, Václav

2005-01-01

Hemocytes of two tick species, Ixodes ricinus and Ornithodoros moubata, were investigated with the aim to determine their ultrastructural characteristics and developmental relationships. Only a limited number of ultrastructural features was shown to be unequivocally homological across all hemocyte types. The two species, representing distant groups of ticks, differ in the composition of their circular cell populations. In I. ricinus, three groups of distinct morphological types of hemocytes could be determined according to well-defined ultrastructural features: a typical non-phagocytic granular cell with electron-dense granula and homogeneous cytoplasm (Gr II), and two different types of phagocytic hemocytes, namely plasmatocytes with a low number of granula and phagocytic granolocytes, designated as Gr I. In contrast, an additional cell type resembling insect spherulocytes was determined in O. moubata. This cell type does not seem to be homologous to any I. ricinus hemocyte and may represent a cell type typical of soft ticks only. Possible ontogenetic lineages of the hemocytes of both tick-species were inferred.

Spontaneous formation of spiral-like patterns with distinct periodic physical properties by confined electrodeposition of Co-In disks

NASA Astrophysics Data System (ADS)

Golvano-Escobal, Irati; Gonzalez-Rosillo, Juan Carlos; Domingo, Neus; Illa, Xavi; López-Barberá, José Francisco; Fornell, Jordina; Solsona, Pau; Aballe, Lucia; Foerster, Michael; Suriñach, Santiago; Baró, Maria Dolors; Puig, Teresa; Pané, Salvador; Nogués, Josep; Pellicer, Eva; Sort, Jordi

2016-07-01

Spatio-temporal patterns are ubiquitous in different areas of materials science and biological systems. However, typically the motifs in these types of systems present a random distribution with many possible different structures. Herein, we demonstrate that controlled spatio-temporal patterns, with reproducible spiral-like shapes, can be obtained by electrodeposition of Co-In alloys inside a confined circular geometry (i.e., in disks that are commensurate with the typical size of the spatio-temporal features). These patterns are mainly of compositional nature, i.e., with virtually no topographic features. Interestingly, the local changes in composition lead to a periodic modulation of the physical (electric, magnetic and mechanical) properties. Namely, the Co-rich areas show higher saturation magnetization and electrical conductivity and are mechanically harder than the In-rich ones. Thus, this work reveals that confined electrodeposition of this binary system constitutes an effective procedure to attain template-free magnetic, electric and mechanical surface patterning with specific and reproducible shapes.

Spin wave modes in out-of-plane magnetized nanorings

NASA Astrophysics Data System (ADS)

Zhou, X.; Tartakovskaya, E. V.; Kakazei, G. N.; Adeyeye, A. O.

2017-07-01

We investigated the spin wave modes in flat circular permalloy rings with a canted external bias field using ferromagnetic resonance spectroscopy. The external magnetic field H was large enough to saturate the samples. For θ =0∘ (perpendicular geometry), three distinct resonance peaks were observed experimentally. In the case of the cylindrical symmetry violation due to H inclination from normal to the ring plane (the angle θ of H inclination was varied in the 0∘-6∘ range), the splitting of all initial peaks appeared. The distance between neighbor split peaks increased with the θ increment. Unexpectedly, the biggest splitting was observed for the mode with the smallest radial wave vector. This special feature of splitting behavior is determined by the topology of the ring shape. Developed analytical theory revealed that in perpendicular geometry, each observed peak is a combination of signals from the set of radially quantized spin wave excitation with almost the same radial wave vectors, radial profiles, and frequencies, but with different azimuthal dependencies. This degeneracy is a consequence of circular symmetry of the system and can be removed by H inclination from the normal. Our findings were further supported by micromagnetic simulations.

Geologic map of the Artemis Chasma quadrangle (V-48), Venus

USGS Publications Warehouse

Bannister, Roger A.; Hansen, Vicki L.

2010-01-01

Artemis, named for the Greek goddess of the hunt, represents an approximately 2,600 km diameter circular feature on Venus, and it may represent the largest circular structure in our solar system. Artemis, which lies between the rugged highlands of Aphrodite Terra to the north and relatively smooth lowlands to the south, includes an interior topographic high surrounded by the 2,100-km-diameter, 25- to 200-km-wide, 1- to 2-km-deep circular trough, called Artemis Chasma, and an outer rise that grades outward into the surrounding lowland. Although several other chasmata exist in the area and globally, other chasmata have generally linear trends that lack the distinctive circular pattern of Artemis Chasma. The enigmatic nature of Artemis has perplexed researchers since Artemis Chasma was first identified in Pioneer Venus data. Although Venus' surface abounds with circular to quasi-circular features at a variety of scales, including from smallest to largest diameter features: small shield edifices (>1 km), large volcanic edifices (100-1,000 km), impact craters (1-270 km), coronae (60-1,010 km), volcanic rises and crustal plateaus (~1,500-2,500 km), Artemis defies classification into any of these groups. Artemis dwarfs Venus' largest impact crater, Mead (~280 km diameter); Artemis also lacks the basin topography, multiple ring structures, and central peak expected for large impact basins. Topographically, Artemis resembles some Venusian coronae; however Artemis is an order of magnitude larger than the average corona (200 km) and about twice the size of Heng-O Corona (which is 1,010 km in diameter), the largest of Venusian coronae. In map view Artemis' size and shape resemble volcanic rises and crustal plateaus; however, both of these classes of features differ topographically from Artemis. Volcanic rises and crustal plateaus form broad domical regions, and steep-sided regions with flat tops, respectively; furthermore, neither rises nor plateaus include circular troughs. So although it seems clear what Artemis is not, there is little consensus about what Artemis is, much less how Artemis formed. Debate during the past decade has resulted in the proposal of at least four hypotheses for Artemis' formation. The first (herein referred to as H1) is that Artemis Chasma represents a zone of northwest-directed convergence and subduction. The second hypothesis (herein referred to as H2) is that Artemis consists of a composite structure with a part of its interior region marking the exposure of deformed ductile deep-crustal rocks analogous to a terrestrial metamorphic core complex. The third (herein referred to as H3) is that Artemis reflects the surface expression of an ancient (>3.5 Ga) huge bolide impact event on cold strong lithosphere. The fourth hypothesis (herein referred to as H4) is that Artemis marks the surface expression of a deep mantle plume. Each of these hypotheses holds different implications for Venus geodynamics and evolution processes, and for terrestrial planet processes in general. Viability of H1 would provide support that terrestrial-like plate-tectonic processes once occurred on Earth's sister planet. The feasibility of H2 would require high values of crustal extension and therefore imply that significant horizontal displacements occurred on Venus-displacement that may or may not be related to terrestrial-like plate-tectonic processes. The possibility of H3 would suggest that Venus' surface is extremely old, and that Venus has experienced very little dynamic activity for the last 3.5 billion years or more; this would further imply that Venus is essentially tectonically dead, and has been for most of its history. This view contrasts strongly with studies that highlight a rich history of Venus including activity at least as young as 750 million years ago, and quite likely up to the present. If H4 has credibility, then Artemis could provide clues to cooling mechanisms of Earth's sister planet. Each of these hypotheses

E/V Nautilus Detection of Isolated Features in the Eastern Pacific Ocean: Newly Discovered Calderas and Methane Seeps

NASA Astrophysics Data System (ADS)

Raineault, N.; Irish, O.; Lubetkin, M.

2016-02-01

The E/V Nautilus mapped over 80,000 km2 of the seafloor in the Gulf of Mexico and Eastern Pacific Ocean during its 2015 expedition. The Nautilus used its Kongsberg EM302 multibeam system to map the seafloor prior to remotely operated vehicle (ROV) dives, both for scientific purposes (site selection) and navigational safety. The Nautilus also routinely maps during transits to identify previously un-mapped or unresolved seafloor features. During its transit from the Galapagos Islands to the California Borderland, the Nautilus mapped 44,695 km2 of seafloor. Isolated features on the seafloor and in the water-column, such as calderas and methane seeps, were detected during this data collection effort. Operating at a frequency of 30 kHz in waters ranging from 1000-5500 m, we discovered caldera features off the coast of Central America. Since seamounts are known hotspots of biodiversity, locating new ones may enrich our understanding of seamounts as "stepping stones" for species distribution and ocean current pathways. Satellite altimetry datasets prior to this data either did not discern these calderas or recognized the presence of a bathymetric high without great detail. This new multibeam bathymetry data, gridded at 50 m, gives a precise look at these seamounts that range in elevation from 350 to 1400 m from abyssal depth. The largest of the calderas is circular in shape and is 10,000 m in length and 5,000 m in width, with a distinct circular depression at the center of its highest point, 1,400 m above the surrounding abyssal depth. In the California Borderland region, located between San Diego and Los Angeles, four new seeps were discovered in water depths from 400-1,020 m. ROV exploration of these seeps revealed vent communities. Altogether, these discoveries reinforce how little we know about the global ocean, indicate the presence of isolated deep-sea ecosystems that support biologically diverse communities, and will impact our understanding of seafloor habitat.

Circular RNA Expression: Its Potential Regulation and Function.

PubMed

Salzman, Julia

2016-05-01

In 2012, a new feature of eukaryotic gene expression emerged: ubiquitous expression of circular RNA (circRNA) from genes traditionally thought to express messenger or linear noncoding (nc)RNA only. CircRNAs are covalently closed, circular RNA molecules that typically comprise exonic sequences and are spliced at canonical splice sites. This feature of gene expression was first recognized in humans and mouse, but it quickly emerged that it was common across essentially all eukaryotes studied by molecular biologists. CircRNA abundance, and even which alternatively spliced circRNA isoforms are expressed, varies by cell type and can exceed the abundance of the traditional linear mRNA or ncRNA transcript. CircRNAs are enriched in the brain and increase in abundance during fetal development. Together, these features raise fundamental questions regarding the regulation of circRNA in cis and in trans, and its function. Copyright © 2016. Published by Elsevier Ltd.

A Circular Polarizer with Beamforming Feature Based on Frequency Selective Surfaces

NASA Astrophysics Data System (ADS)

Yin, Jia Yuan; Wan, Xiang; Ren, Jian; Cui, Tie Jun

2017-01-01

We propose a circular polarizer with beamforming features based on frequency selective surface (FSS), in which a modified anchor-shaped unit cell is used to reach the circular polarizer function. The beamforming characteristic is realized by a particular design of the unit-phase distribution, which is obtained by varying the scale of the unit cell. Instead of using plane waves, a horn antenna is designed to feed the phase-variant FSS. The proposed two-layer FSS is fabricated and measured to verify the design. The measured results show that the proposed structure can convert the linearly polarized waves to circularly polarized waves. Compared with the feeding horn antenna, the transmitted beam of the FSS-added horn is 14.43° broader in one direction, while 3.77° narrower in the orthogonal direction. To our best knowledge, this is the first time to realize circular polarizer with beamforming as the extra function based on FSS, which is promising in satellite and communication systems for potential applications due to its simple design and good performance.

Circular RNA biogenesis can proceed through an exon-containing lariat precursor.

PubMed

Barrett, Steven P; Wang, Peter L; Salzman, Julia

2015-06-09

Pervasive expression of circular RNA is a recently discovered feature of eukaryotic gene expression programs, yet its function remains largely unknown. The presumed biogenesis of these RNAs involves a non-canonical 'backsplicing' event. Recent studies in mammalian cell culture posit that backsplicing is facilitated by inverted repeats flanking the circularized exon(s). Although such sequence elements are common in mammals, they are rare in lower eukaryotes, making current models insufficient to describe circularization. Through systematic splice site mutagenesis and the identification of splicing intermediates, we show that circular RNA in Schizosaccharomyces pombe is generated through an exon-containing lariat precursor. Furthermore, we have performed high-throughput and comprehensive mutagenesis of a circle-forming exon, which enabled us to discover a systematic effect of exon length on RNA circularization. Our results uncover a mechanism for circular RNA biogenesis that may account for circularization in genes that lack noticeable flanking intronic secondary structure.

Single-Layer Wire Routing.

DTIC Science & Technology

1987-08-01

techniques for routing and testing the rout- ability of designs. The design model is ill- suited for the developement of routing algorithms, but the...circular ordering of ca- bles at a feature endpoint. The arrows de - pict the circular ordering of cables at feature ’ 3 cables endpoints p and q. There can...Figure le -1, whose only proper realizations have size fQ(n 2 ). From a practical standpoint, however, the sketch algorithms do not seem as good. Most

Large quasi-circular features beneath frost on Triton

NASA Technical Reports Server (NTRS)

Helfenstein, Paul; Veverka, Joseph; Mccarthy, Derek; Lee, Pascal; Hillier, John

1992-01-01

Specially processed Voyager 2 images of Neptune's largest moon, Triton, reveal three large quasi-circular features ranging in diameter from 280 to 935 km within Triton's equatorial region. The largest of these features contains a central irregularly shaped area of comparatively low albedo about 380 km in diameter, surrounded by crudely concentric annuli of higher albedo materials. None of the features exhibit significant topographic expression, and all appear to be primarily albedo markings. The features are located within a broad equatorial band of anomalously transparent frost that renders them nearly invisible at the large phase angles (alpha greater than 90 deg) at which Voyager obtained its highest resolution coverage of Triton. The features can be discerned at smaller phase angles (alpha = 66 deg) at which the frost only partially masks underlying albedo contrasts. The origin of the features is uncertain but may have involved regional cryovolcanic activity.

Effective interactions between inclusions in an active bath

NASA Astrophysics Data System (ADS)

Zaeifi Yamchi, Mahdi; Naji, Ali

2017-11-01

We study effective two- and three-body interactions between non-active colloidal inclusions in an active bath of chiral or non-chiral particles, using Brownian dynamics simulations within a standard, two-dimensional model of disk-shaped inclusions and active particles. In a non-chiral active bath, we first corroborate previous findings on effective two-body repulsion mediated between the inclusions by elucidating the detailed non-monotonic features of the two-body force profiles, including a primary maximum and a secondary hump at larger separations that was not previously reported. We then show that these features arise directly from the formation, and sequential overlaps, of circular layers (or "rings") of active particles around the inclusions, as the latter are brought to small surface separations. These rings extend to radial distances of a few active-particle radii from the surface of inclusions, giving the hard-core inclusions relatively thick, soft, repulsive "shoulders," whose multiple overlaps then enable significant (non-pairwise) three-body forces in both non-chiral and chiral active baths. The resulting three-body forces can even exceed the two-body forces in magnitude and display distinct repulsive and attractive regimes at intermediate to large self-propulsion strengths. In a chiral active bath, we show that, while active particles still tend to accumulate at the immediate vicinity of the inclusions, they exhibit strong depletion from the intervening region between the inclusions and partial depletion from relatively thick, circular zones further away from the inclusions. In this case, the effective, predominantly repulsive interactions between the inclusions turn to active, chirality-induced, depletion-type attractions, acting over an extended range of separations.

Circular permutation of a WW domain: Folding still occurs after excising the turn of the folding-nucleating hairpin

PubMed Central

Kier, Brandon L.; Anderson, Jordan M.; Andersen, Niels H.

2014-01-01

A hyperstable Pin1 WW domain has been circularly permuted via excision of the fold-nucleating turn; it still folds to form the native three-strand sheet and hydrophobic core features. Multiprobe folding dynamics studies of the normal and circularly permuted sequences, as well as their constituent hairpin fragments and comparable-length β-strand-loop-β-strand models, indicate 2-state folding for all topologies. N-terminal hairpin formation is the fold nucleating event for the wild-type sequence; the slower folding circular permutant has a more distributed folding transition state. PMID:24350581

Circular motion geometry using minimal data.

PubMed

Jiang, Guang; Quan, Long; Tsui, Hung-Tat

2004-06-01

Circular motion or single axis motion is widely used in computer vision and graphics for 3D model acquisition. This paper describes a new and simple method for recovering the geometry of uncalibrated circular motion from a minimal set of only two points in four images. This problem has been previously solved using nonminimal data either by computing the fundamental matrix and trifocal tensor in three images or by fitting conics to tracked points in five or more images. It is first established that two sets of tracked points in different images under circular motion for two distinct space points are related by a homography. Then, we compute a plane homography from a minimal two points in four images. After that, we show that the unique pair of complex conjugate eigenvectors of this homography are the image of the circular points of the parallel planes of the circular motion. Subsequently, all other motion and structure parameters are computed from this homography in a straighforward manner. The experiments on real image sequences demonstrate the simplicity, accuracy, and robustness of the new method.

Circular RNA biogenesis can proceed through an exon-containing lariat precursor

PubMed Central

Barrett, Steven P; Wang, Peter L; Salzman, Julia

2015-01-01

Pervasive expression of circular RNA is a recently discovered feature of eukaryotic gene expression programs, yet its function remains largely unknown. The presumed biogenesis of these RNAs involves a non-canonical ‘backsplicing’ event. Recent studies in mammalian cell culture posit that backsplicing is facilitated by inverted repeats flanking the circularized exon(s). Although such sequence elements are common in mammals, they are rare in lower eukaryotes, making current models insufficient to describe circularization. Through systematic splice site mutagenesis and the identification of splicing intermediates, we show that circular RNA in Schizosaccharomyces pombe is generated through an exon-containing lariat precursor. Furthermore, we have performed high-throughput and comprehensive mutagenesis of a circle-forming exon, which enabled us to discover a systematic effect of exon length on RNA circularization. Our results uncover a mechanism for circular RNA biogenesis that may account for circularization in genes that lack noticeable flanking intronic secondary structure. DOI: http://dx.doi.org/10.7554/eLife.07540.001 PMID:26057830

Pollen grain morphology of Fabaceae in the Special Protection Area (SPA) Pau-de-Fruta, Diamantina, Minas Gerais, Brazil.

PubMed

Luz, Cynthia F P da; Maki, Erica S; Horák-Terra, Ingrid; Vidal-Torrado, Pablo; Mendonça Filho, Carlos Victor

2013-01-01

The presented paper considered the pollen morphology of thirteen species belonging to seven genera of the Fabaceae family occurring in the Pau-de-Fruta Special Protection Area (SPA), Diamantina, state of Minas Gerais, Brazil. The pollen grains of six species of Chamaecrista [C. cathartica (Mart.) H.S. Irwin & Barneby, C. debilis Vogel, C. flexuosa (L.) Greene, C. hedysaroides (Vogel) H.S. Irwin & Barneby, C. glandulosa (L.) Greene, and C. papillata H.S. Irwin & Barneby] have a similar morphology, characterized by three long colporated apertures with a central constriction. The species share specific morphological features regarding pollen size, endoaperture type (circular, lalongate or lolongate) and SEM ornamentation patterns of the exine (rugulate with perforations or perforate). Andira fraxinifolia Benth., Dalbergia miscolobium Benth, Galactia martii DC, Periandra mediterranea (Vell.) Taub., Senna rugosa (G.Don) H.S. Irwin & Barneby and Zornia diphylla (L.) Pers showed different pollen types in small to large size; oblate spheroidal to prolate form; colpus or colporus apertures; circular, lalongate or lolongate endoapertures and distinctive SEM ornamentation patterns of the exine (perforate, microreticulate, reticulate or rugulate with perforations). Only Stryphnodendron adstringens (Mart.) Coville presents polyads. The pollen morphology variation of these species allowed the Fabaceae family to be characterized as eurypalynous in the SPA Pau-de-Fruta.

Earth Observation taken by the Expedition 20 crew

NASA Image and Video Library

2009-10-06

ISS020-E-047807 (6 Oct. 2009) --- Thunderstorms on the Brazilian horizon are featured in this image photographed by an Expedition 20 crew member on the International Space Station. A picturesque line of thunderstorms and numerous circular cloud patterns filled the view as the station crew members looked out at the limb and atmosphere (blue line on the horizon) of Earth. This region displayed in the photograph (top) includes an unstable, active atmosphere forming a large area of cumulonimbus clouds in various stages of development. The crew was looking west southwestward from the Amazon Basin, along the Rio Madeira, toward Bolivia when the image was taken. The distinctive circular patterns of the clouds in this view are likely caused by the aging of thunderstorms. Such ring structures often form during the final stages of a storm?s development as their centers collapse. Sunglint is visible on the waters of the Rio Madeira and Lago Acara in the Amazon Basin. Widespread haze over the basin gives the reflected light an orange hue. The Rio Madeira flows northward and joins the Amazon River on its path to the Atlantic Ocean. Scientists believe that a large smoke plume near the bottom center of the image may explain one source of the haze.

Generation of Bright Phase-matched Circularly-polarized Extreme Ultraviolet High Harmonics

DTIC Science & Technology

2014-12-08

circularly-polarized laser pulses field-ionize a gas in a hollow - core waveguide. We use this new light source for magnetic circular dichroism...polarized with opposite helicity in a gas-filled hollow waveguide (see Supplementary Section 6 for details on the important features of this source...mJ/pulse) driving lasers are focused into a 150-µm-diameter, 2-cm-long gas-filled hollow waveguide using lenses with focal lengths of 50 cm and 75 cm

Egg structure and ultrastructure of Paterdecolyus yanbarensis (Insecta, Orthoptera, Anostostomatidae, Anabropsinae).

PubMed

Mashimo, Yuta; Fukui, Makiko; Machida, Ryuichiro

2016-11-01

The egg structure of Paterdecolyus yanbarensis was examined using light, scanning electron and transmission electron microscopy. The egg surface shows a distinct honeycomb pattern formed by exochorionic ridges. Several micropyles are clustered on the ventral side of the egg. The egg membrane is composed of an exochorion penetrated with numerous aeropyles, an endochorion, and an extremely thin vitelline membrane. The endochorion is thickened at the posterior egg pole, probably associated with water absorption. A comparison of egg structure among Orthoptera revealed that the micropylar distribution pattern is conserved in Ensifera and Caelifera and might be regarded as a groundplan feature for each group; in Ensifera, multiple micropyles are clustered on the ventral side of the egg, whereas in Caelifera, micropyles are arranged circularly around the posterior pole of the egg. Copyright © 2016 Elsevier Ltd. All rights reserved.

The Residual Polar Caps of Mars: Geological Differences and Possible Consequences

NASA Technical Reports Server (NTRS)

Thomas, P. C.; Sullivan, R.; Ingersoll, A. P.; Murray, B. C.; Danielson, G. E.; Herkenhoff, K. E.; Soderblom, L.; Malin, M. C.; Edgett, K. S.; James, P. B.

2000-01-01

The Martian polar regions have been known to have thick layered sequences (presumed to consist of silicates and ice), CO2 seasonal frost, and residual frosts that remain through the summer: H2O in the north, largely CO2 in the south. The relationship of the residual frosts to the underlying layered deposits could not be determined from Viking images. The Mars Orbiter Camera on Mars Global Surveyor has provided a 50-fold increase in resolution that shows more differences between the two poles. The north residual cap surface has rough topography of pits, cracks, and knobs, suggestive of ablational forms. This topography is less than a few meters in height, and grades in to surfaces exposing the layers underneath. In contrast, the south residual cap has distinctive collapse and possibly ablational topography emplaced in four or more layers, each approx. two meters thick. The top surface has polygonal depressions suggestive of thermal contraction cracks. The collapse and erosional forms include circular and cycloidal depressions, long sinuous troughs, and nearly parallel sets of troughs. The distinctive topography occurs throughout the residual cap area, but not outside it. Unconformities exposed in polar layers, or other layered materials, do not approximate the topography seen on the south residual cap. The coincidence of a distinct geologic feature, several layers modified by collapse, ablation, and mass movement with the residual cap indicates a distinct composition and/or climate compared to both the remainder of the south polar layered units and those in the north.

Triton - False Color of Cantaloupe Terrain

NASA Image and Video Library

1996-09-26

Voyager violet, green, and ultraviolet images of Triton were map projected into cylindrical coordinates and combined to produce this false color terrain map. Several compositionally distinct terrain and geologic features are portrayed. At center is a gray blue unit referred to as 'cantaloupe' terrain because of its unusual topographic texture. The unit appears to predate other units to the left. Immediately adjacent to the cantaloupe terrain, is a smoother unit, represented by a reddish color, that has been dissected by a prominent fault system. This unit apparently overlies a much higher albedo material, seen farther left. A prominent angular albedo boundary separates relatively undisturbed smooth terrain from irregular patches which have been derived from breakup of the same material. Also visible at the far left are diffuse, elongated streaks, which seem to emanate from circular, often bright centered features. The parallel streaks may represent vented particulate materials blown in the same direction by winds in Triton's thin atmosphere. The Voyager Mission was conducted by JPL for NASA's Office of Space Science and Applications. http://photojournal.jpl.nasa.gov/catalog/PIA00060

Characteristics of large three-dimensional heaps of particles produced by ballistic deposition from extended sources

NASA Astrophysics Data System (ADS)

Topic, Nikola; Gallas, Jason A. C.; Pöschel, Thorsten

2013-11-01

This paper reports a detailed numerical investigation of the geometrical and structural properties of three-dimensional heaps of particles. Our goal is the characterization of very large heaps produced by ballistic deposition from extended circular dropping areas. First, we provide an in-depth study of the formation of monodisperse heaps of particles. We find very large heaps to contain three new geometrical characteristics: they may display two external angles of repose, one internal angle of repose, and four distinct packing fraction (density) regions. Such features are found to be directly connected with the size of the dropping zone. We derive a differential equation describing the boundary of an unexpected triangular packing fraction zone formed under the dropping area. We investigate the impact that noise during the deposition has on the final heap structure. In addition, we perform two complementary experiments designed to test the robustness of the novel features found. The first experiment considers changes due to polydispersity. The second checks what happens when letting the extended dropping zone to become a point-like source of particles, the more common type of source.

An interdisciplinary analysis of multispectral satellite data for selected cover types in the Colorado mountains, using automatic data processing techniques

NASA Technical Reports Server (NTRS)

Hoffer, R. M. (Principal Investigator)

1974-01-01

The author has identified the following significant results. In the San Juan Mountains there exists a group of structural and topographic features which suggest a common origin. The relative positions of the San Juan Depression with the Silverton and Lake City Calderas indicate they are possibly on the edge of a large circular feature. Comparison with the 1:250,000 scale Durango Geologic Map reveals a series of radial and arcuate faults concentric with the major circular feature. Such a fracture pattern implies that the circular feature may represent the extent of a major domal uplift in the area. The uplift was very likely due to the sub-crustal emplacement of the parent magma of the San Juan volcanics and intrusives. The broad doming led to the formation of a zone of tensional ring fractures which acted as conduits of release for the magma and the eventual development of the various calderas. The ring fracturing was probably incomplete with hinging occurring in the southern and southwestern portions of the dome accounting for the lack of development of caldera structures in that portion of the area.

South Polar Depression

NASA Technical Reports Server (NTRS)

2005-01-01

14 August 2005 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a circular depression and a suite of eroding mesas of carbon dioxide. These features occur in the south polar residual cap of Mars. The eroding carbon dioxide creates landforms reminiscent of 'Swiss cheese.' The circular feature might indicate the location of a filled, buried impact crater.

Location near: 86.8oS, 111.0oW Image width: width: 3 km (1.9 mi) Illumination from: upper left Season: Southern Spring

ARC-1979-AC79-7083

NASA Image and Video Library

1979-07-09

P-21751 C Range: 1.2 million kilometers This Voyager 2 color photo of Ganymede, the largest Galilean satellite, shows a large dark circular feature about 3200 kilometers in diameter with narrow closely-spaced light bands traversing its surface. The bright spots dotting the surface are relatively recent impact craters, while the lighter circular areas may be older impact areas. The light branching bands are ridged and grooved terrain first seen on Voyager 1 and are younger than the more heavily cratered dark regions. The nature of the brightish region covering the northern part of the dark circular fature is uncertain, but it may be some type of condensate. Most of the features seen on the surface of Ganymede are probably both internal and external responses of the very thick icy layer which comprises the crust of this satellite.

Plasmon-mediated circularly polarized luminescence of GaAs in a scanning tunneling microscope

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mühlenberend, Svenja; Gruyters, Markus; Berndt, Richard, E-mail: berndt@physik.uni-kiel.de

2015-12-14

The electroluminescence from p-type GaAs(110) in a scanning tunneling microscope has been investigated at 6 K. Unexpectedly, high degrees of circular polarization have often been observed with ferromagnetic Ni tips and also with paramagnetic W and Ag tips. The data are interpreted in terms of two distinct excitation mechanisms. Electron injection generates intense luminescence with low polarization. Plasmon-mediated generation of electron-hole pairs leads to less intense emission, which, however, is highly polarized for many tips.

Geochemical exploration for mineralized breccia pipes in northern Arizona, U.S.A.

USGS Publications Warehouse

Wenrich, K.J.

1986-01-01

Thousands of solution-collapse breccia pipe crop out in the canyons and on the plateaus of northern Arizona. Over 80 of these are known to contain U or Cu mineralized rock. The high-grade U ore associated with potentially economic concentrations of Ag, Pb, Zn, Cu, Co and Ni in some of these pipes has continued to stimulate mining and exploration activity in northern Arizona, despite periods of depressed U prices. Large expanses of northern Arizona are comprised of undissected high plateaus; recognition of pipes in these areas is particularly important because mining access to the plateaus is far better than to the canyons. The small size of the pipes, generally less than 600 ft (200 m) in diameter, and limited rock outcrop on the plateaus, compounds the recognition problem. Although the breccia pipes, which bottom in the Mississippian Redwall Limestone, are occasionally exposed on the plateaus as circular features, so are unmineralized near-surface collapse features that bottom in the Permian Kaibab and Toroweap Formations. The distinction between these two classes of circular features is critical during exploration for this unique type of U deposit. Various geochemical and geophysical exploration methods have been tested over these classes of collapse features. Because of the small size of the deposits, and the low-level geochemical signatures in the overlying rock that are rarely dispersed for distances in excess of several hundred feet, most reconnaissance geochemical surveys, such as hydrogeochemistry or stream sediment, will not delineete mineralized pipes. Several types of detailed geochemical surveys made over collapse features, located through examination of aerial photographs and later field mapping, have been successful at delineating collapse features from the surrounding host rock: (1) Rock geochemistry commonly shows low level Ag, As, Ba, Co, Cu, Ni, Pb, Se and Zn anomalies over mineralized breccia pipes; (2) Soil surveys appear to have the greatest potential for distinguishing mineralized breccia pipes from the surrounding terrane. Although the soil anomalies are only twice the background concentrations for most anomalous elements, traverses made over collapse features show consistent enrichment inside of the feature as compared to outside; (3) B. Cereus surveys over a known mineralized pipe show significantly more anomalous samples collected from within the ring fracture than from outside of the breccia pipe; (4) Helium soil-gas surveys were made over 7 collapse features with discouraging results from 5 of the 7 features. Geophysical surveys indicate that scaler audio-magnetotelluric (AMT) and E-field telluric profile data show diagnostic conductivity differences over mineralized pipes as compared to the surrounding terrane. These surveys, coupled with the geochemical surveys conducted as detailed studies over features mapped by field and aerial photograph examination, can be a significant asset in the selection of potential breccia pipes for drilling. ?? 1986.

Cup Cylindrical Waveguide Antenna

NASA Technical Reports Server (NTRS)

Acosta, Roberto J.; Darby, William G.; Kory, Carol L.; Lambert, Kevin M.; Breen, Daniel P.

2008-01-01

The cup cylindrical waveguide antenna (CCWA) is a short backfire microwave antenna capable of simultaneously supporting the transmission or reception of two distinct signals having opposite circular polarizations. Short backfire antennas are widely used in mobile/satellite communications, tracking, telemetry, and wireless local area networks because of their compactness and excellent radiation characteristics. A typical prior short backfire antenna contains a half-wavelength dipole excitation element for linear polarization or crossed half-wavelength dipole elements for circular polarization. In order to achieve simultaneous dual circular polarization, it would be necessary to integrate, into the antenna feed structure, a network of hybrid components, which would introduce significant losses. The CCWA embodies an alternate approach that entails relatively low losses and affords the additional advantage of compactness. The CCWA includes a circular cylindrical cup, a circular disk subreflector, and a circular waveguide that serves as the excitation element. The components that make it possible to obtain simultaneous dual circular polarization are integrated into the circular waveguide. These components are a sixpost polarizer and an orthomode transducer (OMT) with two orthogonal coaxial ports. The overall length of the OMT and polarizer (for the nominal middle design frequency of 2.25 GHz) is about 11 in. (approximately equal to 28 cm), whereas the length of a commercially available OMT and polarizer for the same frequency is about 32 in. (approximately equal to 81 cm).

Compact waveguide circular polarizer

DOEpatents

Tantawi, Sami G.

2016-08-16

A multi-port waveguide is provided having a rectangular waveguide that includes a Y-shape structure with first top arm having a first rectangular waveguide port, a second top arm with second rectangular waveguide port, and a base arm with a third rectangular waveguide port for supporting a TE.sub.10 mode and a TE.sub.20 mode, where the end of the third rectangular waveguide port includes rounded edges that are parallel to a z-axis of the waveguide, a circular waveguide having a circular waveguide port for supporting a left hand and a right hand circular polarization TE.sub.11 mode and is coupled to a base arm broad wall, and a matching feature disposed on the base arm broad wall opposite of the circular waveguide for terminating the third rectangular waveguide port, where the first rectangular waveguide port, the second rectangular waveguide port and the circular waveguide port are capable of supporting 4-modes of operation.

Fractal Simulations of African Design in Pre-College Computing Education

ERIC Educational Resources Information Center

Eglash, Ron; Krishnamoorthy, Mukkai; Sanchez, Jason; Woodbridge, Andrew

2011-01-01

This article describes the use of fractal simulations of African design in a high school computing class. Fractal patterns--repetitions of shape at multiple scales--are a common feature in many aspects of African design. In African architecture we often see circular houses grouped in circular complexes, or rectangular houses in rectangular…

Comparative myoanatomy of Echinoderes (Kinorhyncha): a comprehensive investigation by CLSM and 3D reconstruction.

PubMed

Herranz, María; Boyle, Michael J; Pardos, Fernando; Neves, Ricardo C

2014-04-05

Kinorhyncha is a clade of marine invertebrate meiofauna. Their body plan includes a retractable introvert bearing rings of cuticular spines, and a limbless trunk with distinct segmentation of nervous, muscular and epidermal organ systems. As derived members within the basal branch of Ecdysozoa, kinorhynchs may provide an important example of convergence on the evolution of segmentation within one of three bilaterian superclades. We describe the myoanatomy of Echinoderes, the most specious kinorhynch genus, and build upon historical studies of kinorhynch ultrastructure and gross morphology. This is the first multi-species comparison of a complete organ system by confocal microscopy and three-dimensional reconstruction within Kinorhyncha. Myoanatomy of adult Echinoderes is composed of the following: Head with two mouth cone circular muscles, nine pairs of oral style muscles, ten introvert retractors, one introvert circular muscle, and fourteen introvert circular muscle retractors; Neck with one circular muscle; Trunk showing distinct pairs of ventral and dorsal muscles within segments 1-10, dorsoventral muscles within segments 3-10, diagonal muscles within segments 1-8, longitudinal fibers spanning segments 1-9, three pairs of terminal spine muscles, and one pair of male penile spine muscles; Gut showing a pharynx with ten alternating rings of radial and circular muscle fibers enclosed in a complex sheath of protractors and retractors, an orthogonal grid of longitudinal and circular fibers surrounding the intestine, and paired hindgut dilators. Myoanatomy is highly conserved between species of Echinoderes. Interspecific variation is observed in the arrangement and number of introvert fibers and the composition of pharyngeal muscles. Segmented trunk musculature facilitates the movements of articulated cuticular plates along the anterior-posterior axis. Intersegmental muscle fibers assist with dorsoventral and lateral trunk movements. Protractors, retractors and circular muscles coordinate eversion and retraction of the introvert and mouth cone, and relocation of the pharynx during locomotion and feeding behaviors. Pairs of posterior fibers suggest independent movements of terminal spines, and male penile spines. Within Scalidophora, myoanatomy is more similar between Kinorhyncha and Loricifera, than either group is to Priapulida. Kinorhynch myoanatomy may reflect a convergent transition from vermiform to segmented body plans during the early radiation of Ecdysozoa.

Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development.

PubMed

Szabo, Linda; Morey, Robert; Palpant, Nathan J; Wang, Peter L; Afari, Nastaran; Jiang, Chuan; Parast, Mana M; Murry, Charles E; Laurent, Louise C; Salzman, Julia

2015-06-16

The pervasive expression of circular RNA is a recently discovered feature of gene expression in highly diverged eukaryotes, but the functions of most circular RNAs are still unknown. Computational methods to discover and quantify circular RNA are essential. Moreover, discovering biological contexts where circular RNAs are regulated will shed light on potential functional roles they may play. We present a new algorithm that increases the sensitivity and specificity of circular RNA detection by discovering and quantifying circular and linear RNA splicing events at both annotated and un-annotated exon boundaries, including intergenic regions of the genome, with high statistical confidence. Unlike approaches that rely on read count and exon homology to determine confidence in prediction of circular RNA expression, our algorithm uses a statistical approach. Using our algorithm, we unveiled striking induction of general and tissue-specific circular RNAs, including in the heart and lung, during human fetal development. We discover regions of the human fetal brain, such as the frontal cortex, with marked enrichment for genes where circular RNA isoforms are dominant. The vast majority of circular RNA production occurs at major spliceosome splice sites; however, we find the first examples of developmentally induced circular RNAs processed by the minor spliceosome, and an enriched propensity of minor spliceosome donors to splice into circular RNA at un-annotated, rather than annotated, exons. Together, these results suggest a potentially significant role for circular RNA in human development.

Identifying Molecular Targets for Chemoprevention in a Rat Model

DTIC Science & Technology

2007-06-01

accompanied by a reactive stromal proliferation resulting in a distinct thickening of the thin muscular layer surrounding individual glands. These...accompanied by reactive stromal proliferation, resulting in a distinct thickening of the thin muscular layer surrounding individual glands. These proliferations...epithelial cells forming solid bridges and circular apolar lumina. The lesions filled the glandular lumen but did not show distension with foci of

Earth Observations taken by Expedition 30 crewmember

NASA Image and Video Library

2011-11-26

ISS030-E-005456 (26 Nov. 2011) --- Emi Koussi Volcano and Aorounga Impact Crater, Chad are featured in this image photographed by an Expedition 30 crew member on the International Space Station. This striking photograph features two examples of circular landscape features?labeled as craters?that were produced by very different geological processes. At left, the broad grey-green shield volcano of Emi Koussi is visible. The volcano is marked by three overlapping calderas formed by eruptions; these form a large oblong depression at the 3,415 meter ASL summit of the volcano. A smaller crater sits within the larger caldera depression. While volcanic activity has not been observed, nor is mentioned in the historical record, an active thermal area is located on the southern flank. The circular Aorounga Impact Crater is located approximately 110 kilometers to the southeast of Emi Koussi and has its origin in forces from above rather than eruptions from below. According to scientists, the Aorounga structure is thought to record a meteor impact approximately 345-370 million years ago. The circular feature visible at upper right may be only one of three impact craters formed by the same event ? the other two are buried by sand deposits. The linear features (lower right) that arc around Emi Koussi and overprint Aorounga and the surrounding bedrock are known as yardangs; these are rock ridges formed by wind erosion.

The Gemini NICI Planet-Finding Campaign: asymmetries in the HD 141569 disc

NASA Astrophysics Data System (ADS)

Biller, Beth A.; Liu, Michael C.; Rice, Ken; Wahhaj, Zahed; Nielsen, Eric; Hayward, Thomas; Kuchner, Marc J.; Close, Laird M.; Chun, Mark; Ftaclas, Christ; Toomey, Douglas W.

2015-07-01

We report here the highest resolution near-IR imaging to date of the HD 141569A disc taken as part of the NICI (near infrared coronagraphic imager) Science Campaign. We recover four main features in the NICI images of the HD 141569 disc discovered in previous Hubble Space Telescope (HST) imaging: (1) an inner ring/spiral feature. Once deprojected, this feature does not appear circular. (2) An outer ring which is considerably brighter on the western side compared to the eastern side, but looks fairly circular in the deprojected image. (3) An additional arc-like feature between the inner and outer ring only evident on the east side. In the deprojected image, this feature appears to complete the circle of the west side inner ring and (4) an evacuated cavity from 175 au inwards. Compared to the previous HST imaging with relatively large coronagraphic inner working angles (IWA), the NICI coronagraph allows imaging down to an IWA of 0.3 arcsec. Thus, the inner edge of the inner ring/spiral feature is well resolved and we do not find any additional disc structures within 175 au. We note some additional asymmetries in this system. Specifically, while the outer ring structure looks circular in this deprojection, the inner bright ring looks rather elliptical. This suggests that a single deprojection angle is not appropriate for this system and that there may be an offset in inclination between the two ring/spiral features. We find an offset of 4 ± 2 au between the inner ring and the star centre, potentially pointing to unseen inner companions.

Diet Quality of Items Advertised in Supermarket Sales Circulars Compared to Diets of the US Population, as Assessed by the Healthy Eating Index-2010.

PubMed

Jahns, Lisa; Scheett, Angela J; Johnson, LuAnn K; Krebs-Smith, Susan M; Payne, Collin R; Whigham, Leah D; Hoverson, Bonita S; Kranz, Sibylle

2016-01-01

Supermarkets use sales circulars to highlight specific foods, usually at reduced prices. Resulting purchases help form the set of available foods within households from which individuals and families make choices about what to eat. The purposes of this study were to determine how closely foods featured in weekly supermarket sales circulars conform to dietary guidance and how diet quality compares with that of the US population's intakes. Food and beverage items (n=9,149) in 52 weekly sales circulars from a small Midwestern grocery chain in 2009 were coded to obtain food group and nutrient and energy content. Healthy Eating Index-2010 (HEI-2010) total and component scores were calculated using algorithms developed by the National Cancer Institute. HEI-2010 scores for the US population aged 2+ years were estimated using data from the 2009-2010 National Health and Nutrition Examination Survey. HEI-2010 scores of circulars and population intakes were compared using Student's t tests. Mean total (42.8 of 100) HEI-2010 scores of circulars were lower than that of the US population (55.4; P<0.001). Among individual components, Total Protein Foods was the only one for which 100% of the maximum score was met by both circulars and the population. The scores were also similar between the circulars and population for Whole Grains (22%; P=0.81) and Seafood and Plant Proteins (70% to 74%; P=0.33). Circular scores were lower than those of the population for Total and Whole Fruits, Total Vegetables and Greens and Beans, Dairy, Sodium, and Empty Calories (P<0.001); they were higher only for Fatty Acids (P=0.006) and Refined Grains (P<0.001). HEI-2010 total scores for these sales circulars were even lower than US population scores, which have been shown repeatedly to reflect low diet quality. Supermarkets could support improvements in consumer diets by weekly featuring foods that are more in concordance with food and nutrient recommendations. Copyright © 2016 Academy of Nutrition and Dietetics. Published by Elsevier Inc. All rights reserved.

Molecular orbital imaging via above-threshold ionization with circularly polarized pulses.

PubMed

Zhu, Xiaosong; Zhang, Qingbin; Hong, Weiyi; Lu, Peixiang; Xu, Zhizhan

2011-07-18

Above-threshold ionization (ATI) for aligned or orientated linear molecules by circularly polarized laser pulsed is investigated. It is found that the all-round structural information of the molecular orbital is extracted with only one shot by the circularly polarized probe pulse rather than with multi-shot detections in a linearly polarized case. The obtained photoelectron momentum spectrum directly depicts the symmetry and electron distribution of the occupied molecular orbital, which results from the strong sensitivity of the ionization probability to these structural features. Our investigation indicates that the circularly polarized probe scheme would present a simple method to study the angle-dependent ionization and image the occupied electronic orbital.

Establishing a Geologic Baseline Of Cape Canaveral's Natural Landscape: Black Point Drive

NASA Technical Reports Server (NTRS)

Parkinson, Randall W.

2001-01-01

The goal of this project is to identify the process responsible for the formation of geomorphic features in the Black Point Drive area of Merritt Island National Wildlife Refuge/Kennedy Space Center (MINWR/KSC), northwest Cape Canaveral. This study confirms the principal landscape components (geomorphology) of Black Point Drive reflect interaction between surficial sediments deposited in association with late-Quaternary sea-level highstands and the chemical evolution of late-Cenozoic subsurface limestone formations. The Black Point Drive landscape consists of an undulatory mesic terrain which dips westward into myriad circular and channel-like depression marshes and lakes. This geomorphic gradient may reflect: (1) spatial distinctions in the elevation, character or age of buried (pre-Miocene) limestone formations, (2) dissolution history of late-Quaternary coquina and/or (3) thickness of unconsolidated surface sediment. More detailed evaluation of subsurface data will be necessary before this uncertainty can be resolved.

Establishing A Geologic Baseline of Cape Canaveral''s Natural Landscape: Black Point Drive

NASA Technical Reports Server (NTRS)

Parkinson, Randall W.

2002-01-01

The goal of this project is to identify the process responsible for the formation of geomorphic features in the Black Point Drive area of Merritt Island National Wildlife Refuge/Kennedy Space Center (MINWR/KSC), northwest Cape Canaveral. This study confirms the principal landscape components (geomorphology) of Black Point Drive reflect interaction between surficial sediments deposited in association with late-Quaternary sea-level highstands and the chemical evolution of late-Cenozoic sub-surface limestone formations. The Black Point Drive landscape consists of an undulatory mesic terrain which dips westward into myriad circular and channel-like depression marshes and lakes. This geomorphic gradient may reflect: (1) spatial distinctions in the elevation, character or age of buried (pre-Miocene) limestone formations, (2) dissolution history of late-Quaternary coquina and/or (3) thickness of unconsolidated surface sediment. More detailed evaluation of subsurface data will be necessary before this uncertain0 can be resolved.

Sulfur volcanoes on Io?

NASA Astrophysics Data System (ADS)

Greeley, R.; Fink, J.

1985-04-01

The unusual rheological properties of molten sulfur, in which viscosity decreases approximately four orders of magnitude as it cools from 170 to 120 C, may result in distinctive volcanic flow morphologies that allow sulfur flows and volcanoes to be identified on Io. Search of high resolution Voyager images reveals three features--Atar Patera, Daedalus Patera, and Kibero Patera--considered to be possible sulfur volcanoes based on their morphology. All three average 250 km in diameter and are distinguished by circular-to-oval central masses surrounded by irregular, widespread flows. Geometric relations indicate that the flows were emplaced after the central zone and appear to have emanated from their margins. The central zones are interpreted to be domes representing the high temperature stage of sulfur formed initially upon eruption. Rapid quenching formed a crust which preserved this phase of the emplacement. Upon cooling to 170 C, the sulfur reached a low viscosity runny stage and was released as the thin, widespread flows.

Sulfur Volcanoes on Io?

NASA Technical Reports Server (NTRS)

Greeley, R.; Fink, J.

1985-01-01

The unusual rheological properties of molten sulfur, in which viscosity decreases approximately four orders of magnitude as it cools from 170 to 120 C, may result in distinctive volcanic flow morphologies that allow sulfur flows and volcanoes to be identified on Io. Search of high resolution Voyager images reveals three features--Atar Patera, Daedalus Patera, and Kibero Patera--considered to be possible sulfur volcanoes based on their morphology. All three average 250 km in diameter and are distinguished by circular-to-oval central masses surrounded by irregular, widespread flows. Geometric relations indicate that the flows were emplaced after the central zone and appear to have emanated from their margins. The central zones are interpreted to be domes representing the high temperature stage of sulfur formed initially upon eruption. Rapid quenching formed a crust which preserved this phase of the emplacement. Upon cooling to 170 C, the sulfur reached a low viscosity runny stage and was released as the thin, widespread flows.

Survey of large circular and octagonal tanks operated at Norwegian commercial smolt and post-smolt sites

USDA-ARS?s Scientific Manuscript database

A survey was conducted to determine the geometry, operating parameters, and other key features of large circular or octagonal culture tanks used to produce Atlantic salmon smolt and post-smolt at six major Norwegian Atlantic salmon production companies. A total of 55 large tanks were reported at sev...

Metazoan tRNA introns generate stable circular RNAs in vivo

PubMed Central

Lu, Zhipeng; Filonov, Grigory S.; Noto, John J.; Schmidt, Casey A.; Hatkevich, Talia L.; Wen, Ying; Jaffrey, Samie R.; Matera, A. Gregory

2015-01-01

We report the discovery of a class of abundant circular noncoding RNAs that are produced during metazoan tRNA splicing. These transcripts, termed tRNA intronic circular (tric)RNAs, are conserved features of animal transcriptomes. Biogenesis of tricRNAs requires anciently conserved tRNA sequence motifs and processing enzymes, and their expression is regulated in an age-dependent and tissue-specific manner. Furthermore, we exploited this biogenesis pathway to develop an in vivo expression system for generating “designer” circular RNAs in human cells. Reporter constructs expressing RNA aptamers such as Spinach and Broccoli can be used to follow the transcription and subcellular localization of tricRNAs in living cells. Owing to the superior stability of circular vs. linear RNA isoforms, this expression system has a wide range of potential applications, from basic research to pharmaceutical science. PMID:26194134

Children's success at detecting circular explanations and their interest in future learning.

PubMed

Mills, Candice M; Danovitch, Judith H; Rowles, Sydney P; Campbell, Ian L

2017-10-01

These studies explore elementary-school-aged children's ability to evaluate circular explanations and whether they respond to receiving weak explanations by expressing interest in additional learning. In the first study, 6-, 8-, and 10-year-olds (n = 53) heard why questions about unfamiliar animals. For each question, they rated the quality of single explanations and later selected the best explanation between pairs of circular and noncircular explanations. When judging single explanations, 8- and 10-year-olds, and to some extent 6-year-olds, provided higher ratings for noncircular explanations compared to circular ones. When selecting between pairs of explanations, all age groups preferred noncircular explanations to circular ones, but older children did so more consistently than 6-year-olds. Children who recognized the weakness of the single circular explanations were more interested in receiving additional information about the question topics. In Study 2, all three age groups (n = 87) provided higher ratings for noncircular explanations compared to circular ones when listening to responses to how questions, but older children showed a greater distinction in their ratings than 6-year-olds. Moreover, the link between recognizing circular explanations as weak and interest in future learning could not be accounted for solely by individual differences in verbal intelligence. These findings illustrate the developmental trajectory of explanation evaluation and support that recognition of weak explanations is linked to interest in future learning across the elementary years. Implications for education are discussed.

Comparative Analysis of the First Complete Enterococcus faecium Genome

PubMed Central

Lam, Margaret M. C.; Seemann, Torsten; Bulach, Dieter M.; Gladman, Simon L.; Chen, Honglei; Haring, Volker; Moore, Robert J.; Ballard, Susan; Grayson, M. Lindsay; Johnson, Paul D. R.; Howden, Benjamin P.

2012-01-01

Vancomycin-resistant enterococci (VRE) are one of the leading causes of nosocomial infections in health care facilities around the globe. In particular, infections caused by vancomycin-resistant Enterococcus faecium are becoming increasingly common. Comparative and functional genomic studies of E. faecium isolates have so far been limited owing to the lack of a fully assembled E. faecium genome sequence. Here we address this issue and report the complete 3.0-Mb genome sequence of the multilocus sequence type 17 vancomycin-resistant Enterococcus faecium strain Aus0004, isolated from the bloodstream of a patient in Melbourne, Australia, in 1998. The genome comprises a 2.9-Mb circular chromosome and three circular plasmids. The chromosome harbors putative E. faecium virulence factors such as enterococcal surface protein, hemolysin, and collagen-binding adhesin. Aus0004 has a very large accessory genome (38%) that includes three prophage and two genomic islands absent among 22 other E. faecium genomes. One of the prophage was present as inverted 50-kb repeats that appear to have facilitated a 683-kb chromosomal inversion across the replication terminus, resulting in a striking replichore imbalance. Other distinctive features include 76 insertion sequence elements and a single chromosomal copy of Tn1549 containing the vanB vancomycin resistance element. A complete E. faecium genome will be a useful resource to assist our understanding of this emerging nosocomial pathogen. PMID:22366422

Normal and reversed supramolecular chirality of insulin fibrils probed by vibrational circular dichroism at the protofilament level of fibril structure.

PubMed

Kurouski, Dmitry; Dukor, Rina K; Lu, Xuefang; Nafie, Laurence A; Lednev, Igor K

2012-08-08

Fibrils are β-sheet-rich aggregates that are generally composed of several protofibrils and may adopt variable morphologies, such as twisted ribbons or flat-like sheets. This polymorphism is observed for many different amyloid associated proteins and polypeptides. In a previous study we proposed the existence of another level of amyloid polymorphism, namely, that associated with fibril supramolecular chirality. Two chiral polymorphs of insulin, which can be controllably grown by means of small pH variations, exhibit opposite signs of vibrational circular dichroism (VCD) spectra. Herein, using atomic force microscopy (AFM) and scanning electron microscopy (SEM), we demonstrate that indeed VCD supramolecular chirality is correlated not only by the apparent fibril handedness but also by the sense of supramolecular chirality from a deeper level of chiral organization at the protofilament level of fibril structure. Our microscopic examination indicates that normal VCD fibrils have a left-handed twist, whereas reversed VCD fibrils are flat-like aggregates with no obvious helical twist as imaged by atomic force microscopy or scanning electron microscopy. A scheme is proposed consistent with observed data that features a dynamic equilibrium controlled by pH at the protofilament level between left- and right-twist fibril structures with distinctly different aggregation pathways for left- and right-twisted protofilaments. Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Circular RNA is expressed across the eukaryotic tree of life.

PubMed

Wang, Peter L; Bao, Yun; Yee, Muh-Ching; Barrett, Steven P; Hogan, Gregory J; Olsen, Mari N; Dinneny, José R; Brown, Patrick O; Salzman, Julia

2014-01-01

An unexpectedly large fraction of genes in metazoans (human, mouse, zebrafish, worm, fruit fly) express high levels of circularized RNAs containing canonical exons. Here we report that circular RNA isoforms are found in diverse species whose most recent common ancestor existed more than one billion years ago: fungi (Schizosaccharomyces pombe and Saccharomyces cerevisiae), a plant (Arabidopsis thaliana), and protists (Plasmodium falciparum and Dictyostelium discoideum). For all species studied to date, including those in this report, only a small fraction of the theoretically possible circular RNA isoforms from a given gene are actually observed. Unlike metazoans, Arabidopsis, D. discoideum, P. falciparum, S. cerevisiae, and S. pombe have very short introns (∼ 100 nucleotides or shorter), yet they still produce circular RNAs. A minority of genes in S. pombe and P. falciparum have documented examples of canonical alternative splicing, making it unlikely that all circular RNAs are by-products of alternative splicing or 'piggyback' on signals used in alternative RNA processing. In S. pombe, the relative abundance of circular to linear transcript isoforms changed in a gene-specific pattern during nitrogen starvation. Circular RNA may be an ancient, conserved feature of eukaryotic gene expression programs.

Circular RNA Is Expressed across the Eukaryotic Tree of Life

PubMed Central

Wang, Peter L.; Bao, Yun; Yee, Muh-Ching; Barrett, Steven P.; Hogan, Gregory J.; Olsen, Mari N.; Dinneny, José R.; Brown, Patrick O.; Salzman, Julia

2014-01-01

An unexpectedly large fraction of genes in metazoans (human, mouse, zebrafish, worm, fruit fly) express high levels of circularized RNAs containing canonical exons. Here we report that circular RNA isoforms are found in diverse species whose most recent common ancestor existed more than one billion years ago: fungi (Schizosaccharomyces pombe and Saccharomyces cerevisiae), a plant (Arabidopsis thaliana), and protists (Plasmodium falciparum and Dictyostelium discoideum). For all species studied to date, including those in this report, only a small fraction of the theoretically possible circular RNA isoforms from a given gene are actually observed. Unlike metazoans, Arabidopsis, D. discoideum, P. falciparum, S. cerevisiae, and S. pombe have very short introns (∼100 nucleotides or shorter), yet they still produce circular RNAs. A minority of genes in S. pombe and P. falciparum have documented examples of canonical alternative splicing, making it unlikely that all circular RNAs are by-products of alternative splicing or ‘piggyback’ on signals used in alternative RNA processing. In S. pombe, the relative abundance of circular to linear transcript isoforms changed in a gene-specific pattern during nitrogen starvation. Circular RNA may be an ancient, conserved feature of eukaryotic gene expression programs. PMID:24609083

Circularity and self-cleavage as a strategy for the emergence of a chromosome in the RNA-based protocell

PubMed Central

2013-01-01

Background It is now popularly accepted that an “RNA world” existed in early evolution. During division of RNA-based protocells, random distribution of individual genes (simultaneously as ribozymes) between offspring might have resulted in gene loss, especially when the number of gene types increased. Therefore, the emergence of a chromosome carrying linked genes was critical for the prosperity of the RNA world. However, there were quite a few immediate difficulties for this event to occur. For example, a chromosome would be much longer than individual genes, and thus more likely to degrade and less likely to replicate completely; the copying of the chromosome might start at middle sites and be only partial; and, without a complex transcription mechanism, the synthesis of distinct ribozymes would become problematic. Results Inspired by features of viroids, which have been suggested as “living fossils” of the RNA world, we supposed that these difficulties could have been overcome if the chromosome adopted a circular form and small, self-cleaving ribozymes (e.g. the hammer head ribozymes) resided at the sites between genes. Computer simulation using a Monte-Carlo method was conducted to investigate this hypothesis. The simulation shows that an RNA chromosome can spread (increase in quantity and be sustained) in the system if it is a circular one and its linear “transcripts” are readily broken at the sites between genes; the chromosome works as genetic material and ribozymes “coded” by it serve as functional molecules; and both circularity and self-cleavage are important for the spread of the chromosome. Conclusions In the RNA world, circularity and self-cleavage may have been adopted as a strategy to overcome the immediate difficulties for the emergence of a chromosome (with linked genes). The strategy suggested here is very simple and likely to have been used in this early stage of evolution. By demonstrating the possibility of the emergence of an RNA chromosome, this study opens on the prospect of a prosperous RNA world, populated by RNA-based protocells with a number of genes, showing complicated functions. Reviewers This article was reviewed by Sergei Kazakov (nominated by Laura Landweber), Nobuto Takeuchi (nominated by Anthony Poole), and Eugene Koonin. PMID:23971788

Analysis of Morphological Features of Benign and Malignant Breast Cell Extracted From FNAC Microscopic Image Using the Pearsonian System of Curves.

PubMed

Rajbongshi, Nijara; Bora, Kangkana; Nath, Dilip C; Das, Anup K; Mahanta, Lipi B

2018-01-01

Cytological changes in terms of shape and size of nuclei are some of the common morphometric features to study breast cancer, which can be observed by careful screening of fine needle aspiration cytology (FNAC) images. This study attempts to categorize a collection of FNAC microscopic images into benign and malignant classes based on family of probability distribution using some morphometric features of cell nuclei. For this study, features namely area, perimeter, eccentricity, compactness, and circularity of cell nuclei were extracted from FNAC images of both benign and malignant samples using an image processing technique. All experiments were performed on a generated FNAC image database containing 564 malignant (cancerous) and 693 benign (noncancerous) cell level images. The five-set extracted features were reduced to three-set (area, perimeter, and circularity) based on the mean statistic. Finally, the data were fitted to the generalized Pearsonian system of frequency curve, so that the resulting distribution can be used as a statistical model. Pearsonian system is a family of distributions where kappa (κ) is the selection criteria computed as functions of the first four central moments. For the benign group, kappa (κ) corresponding to area, perimeter, and circularity was -0.00004, 0.0000, and 0.04155 and for malignant group it was 1016942, 0.01464, and -0.3213, respectively. Thus, the family of distribution related to these features for the benign and malignant group were different, and therefore, characterization of their probability curve will also be different.

Munitions related feature extraction from LIDAR data.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roberts, Barry L.

2010-06-01

The characterization of former military munitions ranges is critical in the identification of areas likely to contain residual unexploded ordnance (UXO). Although these ranges are large, often covering tens-of-thousands of acres, the actual target areas represent only a small fraction of the sites. The challenge is that many of these sites do not have records indicating locations of former target areas. The identification of target areas is critical in the characterization and remediation of these sites. The Strategic Environmental Research and Development Program (SERDP) and Environmental Security Technology Certification Program (ESTCP) of the DoD have been developing and implementing techniquesmore » for the efficient characterization of large munitions ranges. As part of this process, high-resolution LIDAR terrain data sets have been collected over several former ranges. These data sets have been shown to contain information relating to former munitions usage at these ranges, specifically terrain cratering due to high-explosives detonations. The location and relative intensity of crater features can provide information critical in reconstructing the usage history of a range, and indicate areas most likely to contain UXO. We have developed an automated procedure using an adaptation of the Circular Hough Transform for the identification of crater features in LIDAR terrain data. The Circular Hough Transform is highly adept at finding circular features (craters) in noisy terrain data sets. This technique has the ability to find features of a specific radius providing a means of filtering features based on expected scale and providing additional spatial characterization of the identified feature. This method of automated crater identification has been applied to several former munitions ranges with positive results.« less

Modal analysis applied to circular, rectangular, and coaxial waveguides

NASA Technical Reports Server (NTRS)

Hoppe, D. J.

1988-01-01

Recent developments in the analysis of various waveguide components and feedhorns using Modal Analysis (Mode Matching Method) are summarized. A brief description of the theory is presented, and the important features of the method are pointed out. Specific examples in circular, rectangular, and coaxial waveguides are included, with comparisons between the theory and experimental measurements. Extensions to the methods are described.

Young children's use of features to reorient is more than just associative: further evidence against a modular view of spatial processing.

PubMed

Newcombe, Nora S; Ratliff, Kristin R; Shallcross, Wendy L; Twyman, Alexandra D

2010-01-01

Proponents of a geometric module have argued that instances of young children's use of features as well as geometry to reorient can be explained by a two-stage process. In this model, only the first stage is a true reorientation, accomplished by using geometric information alone; features are considered in a second stage using association (Lee, Shusterman & Spelke, 2006). This account is contradicted by the data from two experiments. Experiment 1a sets the stage for Experiment 1b by showing that young children use geometric information to reorient in a complex geometric figure without a single principal axis of symmetry (an octagon). In such a figure, there are two sets of geometrically congruent corners, with four corners in each set. The addition of a colored wall leads to the existence of three geometrically congruent but, crucially, all unmarked corners; using the colored wall to distinguish among them could not be done associatively. In Experiment 1b, both 3- and 5-year-old children showed true non-associative reorientation using features by performing at above-chance levels on all-white trials. Experiment 2 used a paradigm without distinctive geometry, modeled on Lee et al. (2006), involving an equilateral triangle of hiding places located within a circular enclosure, but with a large stable feature rather than a small moveable one. Four-year-olds (the age group studied by Lee et al.) used features at above-chance levels. Thus, features can be used to reorient, in a way not dependent on association, in contradiction to the two-stage version of the modular view.

Pancake Feature on Ceres

NASA Image and Video Library

2015-03-02

Some might see a pancake, and others a sand dollar, in this new image from NASA Dawn mission. Astronomers are puzzling over a mysterious large circular feature located south of the equator and slightly to the right of center in this view.

Parity–time-symmetric circular Bragg lasers: a proposal and analysis

PubMed Central

Gu, Jiahua; Xi, Xiang; Ma, Jingwen; Yu, Zejie; Sun, Xiankai

2016-01-01

We propose a new type of semiconductor lasers by implementing the concept of parity–time symmetry in a two-dimensional circular Bragg grating structure, where both the real and imaginary parts of the refractive index are modulated along the radial direction. The laser modal properties are analyzed with a transfer-matrix method and are verified with numerical simulation of a practical design. Compared with conventional distributed-feedback lasers with modulation of only the real part of refractive index, the parity–time-symmetric circular Bragg lasers feature reduced threshold and enhanced modal discrimination, which in combination with the intrinsic circularly symmetric, large emission aperture are clear advantages in applications that require mode-hop-free, high-power, single-mode laser operation. PMID:27892933

Metazoan tRNA introns generate stable circular RNAs in vivo.

PubMed

Lu, Zhipeng; Filonov, Grigory S; Noto, John J; Schmidt, Casey A; Hatkevich, Talia L; Wen, Ying; Jaffrey, Samie R; Matera, A Gregory

2015-09-01

We report the discovery of a class of abundant circular noncoding RNAs that are produced during metazoan tRNA splicing. These transcripts, termed tRNA intronic circular (tric)RNAs, are conserved features of animal transcriptomes. Biogenesis of tricRNAs requires anciently conserved tRNA sequence motifs and processing enzymes, and their expression is regulated in an age-dependent and tissue-specific manner. Furthermore, we exploited this biogenesis pathway to develop an in vivo expression system for generating "designer" circular RNAs in human cells. Reporter constructs expressing RNA aptamers such as Spinach and Broccoli can be used to follow the transcription and subcellular localization of tricRNAs in living cells. Owing to the superior stability of circular vs. linear RNA isoforms, this expression system has a wide range of potential applications, from basic research to pharmaceutical science. © 2015 Lu et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

Large Impact Features on Europa: Results of the Galileo Nominal Mission

NASA Technical Reports Server (NTRS)

Moore, Jeffrey M.; Asphaug, Erik; Sullivan, Robert J.; Klemaszewski, James E.; Bender, Kelly C.; Greeley, Ronald; Geissler, Paul E.; McEwen, Alfred S.; Turtle, Elizabeth P.; Phillips, Cynthia B.

1998-01-01

The Galileo Orbiter examined several impact features on Europa at considerably better resolution than was possible from Voyager. The new data allow us to describe the morphology and infer the geology of the largest impact features on Europa, which are probes into the crust. We observe two basic types of large impact features: (1) "classic" impact craters that grossly resemble well-preserved lunar craters of similar size but are more topographically subdued (e.g., Pwyll) and (2) very flat circular features that lack the basic topographic structures of impact craters such as raised rims, a central depression, or central peaks, and which largely owe their identification as impact features to the field of secondary craters radially sprayed about them (e.g., Callanish). Our interpretation is that the classic craters (all <30 km diameter) formed entirely within a solid target at least 5 to 10 km thick that exhibited brittle behavior on time scales of the impact events. Some of the classic craters have a more subdued topography than fresh craters of similar size on other icy bodies such as Ganymede and Callisto, probably due to the enhanced viscous relaxation produced by a steeper thermal gradient on Europa. Pedestal ejecta facies on Europa (and Ganymede) may be produced by the relief-flattening movement of plastically deforming but otherwise solid ice that was warm at the time of emplacement. Callanish and Tyre do not appear to be larger and even more viscously relaxed versions of the classic craters; rather they display totally different morphologies such as distinctive textures and a series of large concentric structural rings cutting impact-feature-related materials. Impact simulations suggest that the distinctive morphologies would not be produced by impact into a solid ice target, but may be explained by impact into an ice layer approximately 10 to 15 km thick overlying a low-viscosity material such as water. The very wide (near antipodal) separation of Callanish and Tyre imply that approximately 10-15 km may have been the global average thickness of the rigid crust of Europa when these impacts occurred. The absence of detectable craters superposed on the interior deposits of Callanish suggests that it is geologically young (< 10(exp 8) years). Hence, it seems likely that our preliminary conclusions about the subsurface structure of Europa apply to the current day.

Large Impact Features on Europa: Results of the Galileo Nominal Mission

USGS Publications Warehouse

Moore, Johnnie N.; Asphaug, E.; Sullivan, R.J.; Klemaszewski, J.E.; Bender, K.C.; Greeley, R.; Geissler, P.E.; McEwen, A.S.; Turtle, E.P.; Phillips, C.B.; Tufts, B.R.; Head, J. W.; Pappalardo, R.T.; Jones, K.B.; Chapman, C.R.; Belton, M.J.S.; Kirk, R.L.; Morrison, D.

1998-01-01

The Galileo Orbiter examined several impact features on Europa at considerably better resolution than was possible from Voyager. The new data allow us to describe the morphology and infer the geology of the largest impact features on Europa, which are probes into the crust. We observe two basic types of large impact features: (1) "classic" impact craters that grossly resemble well-preserved lunar craters of similar size but are more topographically subdued (e.g., Pwyll) and (2) very flat circular features that lack the basic topographic structures of impact craters such as raised rims, a central depression, or central peaks, and which largely owe their identification as impact features to the field of secondary craters radially sprayed about them (e.g., Callanish). Our interpretation is that the classic craters (all <30 km diameter) formed entirely within a solid target at least 5 to 10 km thick that exhibited brittle behavior on time scales of the impact events. Some of the classic craters have a more subdued topography than fresh craters of similar size on other icy bodies such as Ganymede and Callisto, probably due to the enhanced viscous relaxation produced by a steeper thermal gradient on Europa. Pedestal ejecta facies on Europa (and Ganymede) may be produced by the relief-flattening movement of plastically deforming but otherwise solid ice that was warm at the time of emplacement. Callanish and Tyre do not appear to be larger and even more viscously relaxed versions of the classic craters; rather they display totally different morphologies such as distinctive textures and a series of large concentric structural rings cutting impact-feature-related materials. Impact simulations suggest that the distinctive morphologies would not be produced by impact into a solid ice target, but may be explained by impact into an ice layer ~10 to 15 km thick overlying a low-viscosity material such as water. The very wide (near antipodal) separation of Callanish and Tyre imply that ~10-15 km may have been the global average thickness of the rigid crust of Europa when these impacts occurred. The absence of detectable craters superposed on the interior deposits of Callanish suggests that it is geologically young (<108years). Hence, it seems likely that our preliminary conclusions about the subsurface structure of Europa apply to the current day. ?? 1998 Academic Press.

Rotation invariant features for wear particle classification

NASA Astrophysics Data System (ADS)

Arof, Hamzah; Deravi, Farzin

1997-09-01

This paper investigates the ability of a set of rotation invariant features to classify images of wear particles found in used lubricating oil of machinery. The rotation invariant attribute of the features is derived from the property of the magnitudes of Fourier transform coefficients that do not change with spatial shift of the input elements. By analyzing individual circular neighborhoods centered at every pixel in an image, local and global texture characteristics of an image can be described. A number of input sequences are formed by the intensities of pixels on concentric rings of various radii measured from the center of each neighborhood. Fourier transforming the sequences would generate coefficients whose magnitudes are invariant to rotation. Rotation invariant features extracted from these coefficients were utilized to classify wear particle images that were obtained from a number of different particles captured at different orientations. In an experiment involving images of 6 classes, the circular neighborhood features obtained a 91% recognition rate which compares favorably to a 76% rate achieved by features of a 6 by 6 co-occurrence matrix.

Covariance of dynamic strain responses for structural damage detection

NASA Astrophysics Data System (ADS)

Li, X. Y.; Wang, L. X.; Law, S. S.; Nie, Z. H.

2017-10-01

A new approach to address the practical problems with condition evaluation/damage detection of structures is proposed based on the distinct features of a new damage index. The covariance of strain response function (CoS) is a function of modal parameters of the structure. A local stiffness reduction in structure would cause monotonous increase in the CoS. Its sensitivity matrix with respect to local damages of structure is negative and narrow-banded. The damage extent can be estimated with an approximation to the sensitivity matrix to decouple the identification equations. The CoS sensitivity can be calibrated in practice from two previous states of measurements to estimate approximately the damage extent of a structure. A seven-storey plane frame structure is numerically studied to illustrate the features of the CoS index and the proposed method. A steel circular arch in the laboratory is tested. Natural frequencies changed due to damage in the arch and the damage occurrence can be judged. However, the proposed CoS method can identify not only damage happening but also location, even damage extent without need of an analytical model. It is promising for structural condition evaluation of selected components.

Comparison of Topographic Profiles Across Venus' Coronae and Craters: Implications for Corona Origin Hypothesis

NASA Astrophysics Data System (ADS)

Stoddard, P. R.; Jurdy, D. M.

2006-12-01

Venus' surface hosts nearly 1000 unambiguous impact craters, ranging in diameter from 1.5 to 280 km. Although the majority of these are pristine, slightly less than 200 have been modified by either volcanic or tectonic activity or both. In addition, numerous researchers have identified hundreds of ring-like features of varying morphology, termed "coronae." These have typically been thought of as having a diapiric or volcanic origin. Recently, however, based on the circular to quasi-circular nature of coronae, an alternative origin - impact - has been proposed. We compare the profiles across agreed-upon craters to several coronae that have been suggested as impact sites. For each feature, 36 profiles (taken every ten degrees) are aligned and then averaged together. For Mead, Cleopatra, Meitner, and Isabella craters, the profiles display the typical rim and basin structure expected for craters, but for Klenova crater the average is more domal, with only a few of the individual profiles looking crater-like. Among the "contested" coronae, the average profiles for Eurynome, Maya, and C21 appear crater-like, albeit with more variation among the individual profiles than seen in the agreed-upon craters. Anquet has a rim-and-basin structure, but unlike typical craters, the basin is elevated above the surrounding plains. Acrea appears to be a small hill in a large depression, again with a high degree of variability among the profiles. Ninhursag is clearly domal, and cannot be taken as a crater. A summary of the variability of the profiles - where 100% correlation would indicate perfect circular symmetry - indicates that, with the exception of Klenova, those features universally agreed-upon as craters have the highest correlation percentages - all at or above 80%. The disputed features are not as circular, although C21 is close. Based on this analysis, we conclude that Klenova has been mischaracterized as an impact crater, and that C21 and some other features previously classified as coronae may indeed be of impact origin. More careful analyses will be necessary to assess the origin of similar features.

Sequential two-photon double ionization of noble gases by circularly polarized XUV radiation

NASA Astrophysics Data System (ADS)

Gryzlova, E. V.; Grum-Grzhimailo, A. N.; Kuzmina, E. I.; Strakhova, S. I.

2014-10-01

Photoelectron angular distributions (PADs) and angular correlations between two emitted electrons in sequential two-photon double ionization (2PDI) of atoms by circularly polarized radiation are studied theoretically. In particular, the sequential 2PDI of the valence n{{p}6} shell in noble gas atoms (neon, argon, krypton) is analyzed, accounting for the first-order corrections to the dipole approximation. Due to different selection rules in ionization transitions, the circular polarization of photons causes some new features of the cross sections, PADs and angular correlation functions in comparison with the case of linearly polarized photons.

Comparative myoanatomy of Echinoderes (Kinorhyncha): a comprehensive investigation by CLSM and 3D reconstruction

PubMed Central

2014-01-01

Introduction Kinorhyncha is a clade of marine invertebrate meiofauna. Their body plan includes a retractable introvert bearing rings of cuticular spines, and a limbless trunk with distinct segmentation of nervous, muscular and epidermal organ systems. As derived members within the basal branch of Ecdysozoa, kinorhynchs may provide an important example of convergence on the evolution of segmentation within one of three bilaterian superclades. We describe the myoanatomy of Echinoderes, the most specious kinorhynch genus, and build upon historical studies of kinorhynch ultrastructure and gross morphology. This is the first multi-species comparison of a complete organ system by confocal microscopy and three-dimensional reconstruction within Kinorhyncha. Results Myoanatomy of adult Echinoderes is composed of the following: Head with two mouth cone circular muscles, nine pairs of oral style muscles, ten introvert retractors, one introvert circular muscle, and fourteen introvert circular muscle retractors; Neck with one circular muscle; Trunk showing distinct pairs of ventral and dorsal muscles within segments 1–10, dorsoventral muscles within segments 3–10, diagonal muscles within segments 1–8, longitudinal fibers spanning segments 1–9, three pairs of terminal spine muscles, and one pair of male penile spine muscles; Gut showing a pharynx with ten alternating rings of radial and circular muscle fibers enclosed in a complex sheath of protractors and retractors, an orthogonal grid of longitudinal and circular fibers surrounding the intestine, and paired hindgut dilators. Conclusions Myoanatomy is highly conserved between species of Echinoderes. Interspecific variation is observed in the arrangement and number of introvert fibers and the composition of pharyngeal muscles. Segmented trunk musculature facilitates the movements of articulated cuticular plates along the anterior-posterior axis. Intersegmental muscle fibers assist with dorsoventral and lateral trunk movements. Protractors, retractors and circular muscles coordinate eversion and retraction of the introvert and mouth cone, and relocation of the pharynx during locomotion and feeding behaviors. Pairs of posterior fibers suggest independent movements of terminal spines, and male penile spines. Within Scalidophora, myoanatomy is more similar between Kinorhyncha and Loricifera, than either group is to Priapulida. Kinorhynch myoanatomy may reflect a convergent transition from vermiform to segmented body plans during the early radiation of Ecdysozoa. PMID:24708877

Broadband Venetian-Blind Polarizer With Dual Vanes

NASA Technical Reports Server (NTRS)

Conroy, Bruce L.; Hoppe, Daniel J.

1995-01-01

Improved venetian-blind polarizer features optimized tandem, two-layer vane configuration reducing undesired reflections and deformation of radiation pattern below those of prior single-layer vane configuration. Consists of number of thin, parallel metal strips placed in path of propagating radio-frequency beam. Offers simple way to convert polarization from linear to circular or from circular to linear. Particularly useful for beam-wave-guide applications.

Characterization of the complete mitochondrial genomes of two whipworms Trichuris ovis and Trichuris discolor (Nematoda: Trichuridae).

PubMed

Liu, Guo-Hua; Wang, Yan; Xu, Min-Jun; Zhou, Dong-Hui; Ye, Yong-Gang; Li, Jia-Yuan; Song, Hui-Qun; Lin, Rui-Qing; Zhu, Xing-Quan

2012-12-01

For many years, whipworms (Trichuris spp.) have been described with a relatively narrow range of both morphological and biometrical features. Moreover, there has been insufficient discrimination between congeners (or closely related species). In the present study, we determined the complete mitochondrial (mt) genomes of two whipworms Trichuris ovis and Trichuris discolor, compared them and then tested the hypothesis that T. ovis and T. discolor are distinct species by phylogenetic analyses using Bayesian inference, maximum likelihood and maximum parsimony) based on the deduced amino acid sequences of the mt protein-coding genes. The complete mt genomes of T. ovis and T. discolor were 13,946 bp and 13,904 bp in size, respectively. Both mt genomes are circular, and consist of 37 genes, including 13 genes coding for proteins, 2 genes for rRNA, and 22 genes for tRNA. The gene content and arrangement are identical to that of human and pig whipworms Trichuris trichiura and Trichuris suis. Taken together, these analyses showed genetic distinctiveness and strongly supported the recent proposal that T. ovis and T. discolor are distinct species using nuclear ribosomal DNA and a portion of the mtDNA sequence dataset. The availability of the complete mtDNA sequences of T. ovis and T. discolor provides novel genetic markers for studying the population genetics, diagnostics and molecular epidemiology of T. ovis and T. discolor. Copyright © 2012 Elsevier B.V. All rights reserved.

Tharsis Limb Cloud

NASA Technical Reports Server (NTRS)

2005-01-01

[figure removed for brevity, see original site] Annotated image of Tharsis Limb Cloud

7 September 2005 This composite of red and blue Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) daily global images acquired on 6 July 2005 shows an isolated water ice cloud extending more than 30 kilometers (more than 18 miles) above the martian surface. Clouds such as this are common in late spring over the terrain located southwest of the Arsia Mons volcano. Arsia Mons is the dark, oval feature near the limb, just to the left of the 'T' in the 'Tharsis Montes' label. The dark, nearly circular feature above the 'S' in 'Tharsis' is the volcano, Pavonis Mons, and the other dark circular feature, above and to the right of 's' in 'Montes,' is Ascraeus Mons. Illumination is from the left/lower left.

Season: Northern Autumn/Southern Spring

ASI aurora search: an attempt of intelligent image processing for circular fisheye lens.

PubMed

Yang, Xi; Gao, Xinbo; Song, Bin; Wang, Nannan; Yang, Dong

2018-04-02

The circular fisheye lens exhibits an approximately 180° angular field-of-view (FOV), which is much larger than that of an ordinary lens. Thus, images captured with a circular fisheye lens are distributed non-uniformly with spherical deformation. Along with the fast development of deep neural networks for normal images, how to apply it to achieve intelligent image processing for a circular fisheye lens is a new task of significant importance. In this paper, we take the aurora images captured with all-sky-imagers (ASI) as a typical example. By analyzing the imaging principle of ASI and the magnetic characteristics of the aurora, a deformed region division (DRD) scheme is proposed to replace the region proposals network (RPN) in the advanced mask regional convolutional neural network (Mask R-CNN) framework. Thus, each image can be regarded as a "bag" of deformed regions represented with CNN features. After clustering all CNN features to generate a vocabulary, each deformed region is quantified to its nearest center for indexing. On the stage of an online search, a similarity score is computed by measuring the distances between regions in the query image and all regions in the data set, and the image with the highest value is outputted as the top rank search result. Experimental results show that the proposed method greatly improves the search accuracy and efficiency, demonstrating that it is a valuable attempt of intelligent image processing for circular fisheye lenses.

Lake Superior as seen from Skylab

NASA Image and Video Library

1974-01-06

SL4-139-3953 (7 Jan. 1974) --- An oblique view of a portion of the Middle West looking northeastward toward Lake Superior and Ontario, Canada, as seen from the Skylab space station in Earth orbit. This picture was taken by one of the Skylab 4 crewmen with a hand-held 70mm Hasselblad camera using a 100mm lens. Most of the land mass in the foreground is Wisconsin. Iowa is in the lower left corner. Minnesota is at left and upper left. Ontario is in the far right background. Michigan is at right center. Note the circular-shaped feature at center left which was first observed by the Skylab 4 crewmen. The feature is 85 kilometers (55 miles) in diameter, and it is centered near 91.5 degrees west longitude and 44.5 degrees north latitude. The Mississippi River Valley forms the southwest side of the circular feature. The City of La Crosse, Wisconsin, is just south of the near side of the circle, and the Black River completes the southern and eastern part. The City of Eau Claire is at the north edge of the circle. The most likely origin of circular features of this magnitude are (1) volcanic, (2) structural, or (3) meteorite impact. The feature is not volcanic -- the rocks are the wrong type. Possibly it is structural, formed by slight warping of layered rocks into a basin or dome, followed by erosion of all but the most subtle trace of the structure. The feature could be a severely eroded meteorite impact crater. If so, a thorough study of the area may yield evidence of the extreme pressure and temperature the rocks were subjected to by the shock of an impacting meteorite. Photo credit: NASA

The geologic evolution of the moon

NASA Technical Reports Server (NTRS)

Lowman, P. D., Jr.

1971-01-01

A synthesis of pre- and post-Apollo 11 studies is presented to produce an outline of the moon's geologic evolution from three lines of evidence: (1) relative ages of lunar landforms and rock types, (2) absolute ages of returned lunar samples, and (3) petrography, chemistry, and isotopic ratios of lunar rocks and soils. It is assumed that the ray craters, circular mare basins, and most intermediate circular landforms are primarily of impact origin, although many other landforms are volcanic or of hybrid origin. The moon's evolution is divided into four main stages, each including several distinct but overlapping events or processes.

Contrasting effects of feature-based statistics on the categorisation and identification of visual objects

PubMed Central

Taylor, Kirsten I.; Devereux, Barry J.; Acres, Kadia; Randall, Billi; Tyler, Lorraine K.

2013-01-01

Conceptual representations are at the heart of our mental lives, involved in every aspect of cognitive functioning. Despite their centrality, a long-standing debate persists as to how the meanings of concepts are represented and processed. Many accounts agree that the meanings of concrete concepts are represented by their individual features, but disagree about the importance of different feature-based variables: some views stress the importance of the information carried by distinctive features in conceptual processing, others the features which are shared over many concepts, and still others the extent to which features co-occur. We suggest that previously disparate theoretical positions and experimental findings can be unified by an account which claims that task demands determine how concepts are processed in addition to the effects of feature distinctiveness and co-occurrence. We tested these predictions in a basic-level naming task which relies on distinctive feature information (Experiment 1) and a domain decision task which relies on shared feature information (Experiment 2). Both used large-scale regression designs with the same visual objects, and mixed-effects models incorporating participant, session, stimulus-related and feature statistic variables to model the performance. We found that concepts with relatively more distinctive and more highly correlated distinctive relative to shared features facilitated basic-level naming latencies, while concepts with relatively more shared and more highly correlated shared relative to distinctive features speeded domain decisions. These findings demonstrate that the feature statistics of distinctiveness (shared vs. distinctive) and correlational strength, as well as the task demands, determine how concept meaning is processed in the conceptual system. PMID:22137770

Analysis of Radar Images of Angkor, Cambodia

NASA Technical Reports Server (NTRS)

Freeman, Anthony; Hensley, Scott; Moore, Elizabeth

2000-01-01

During the 1996 AIRSAR Pacific Rim Deployment, data were collected over Angkor in Cambodia. The temples of Angkor date the succession of cities to the 9th-13th century AD, but little is known of its prehistoric habitation. A related area of archaeological debate has been the origin, spiritual meaning and use of the hydraulic constructions in the urban zone. The high resolution, multi-channel capability of AIRSAR, together with the unprecedentedly accurate topography provided by TOPSAR, offer identification and delineation of these features. Examples include previously unrecorded circular earthworks around circular village sites, detection of unrecorded earthwork dykes, reservoirs and canal features, and of temple sites located some distance from the main temple complex at Angkor.

Magnetic circular dichroism of chlorofullerenes: Experimental and computational study

NASA Astrophysics Data System (ADS)

Štěpánek, Petr; Straka, Michal; Šebestík, Jaroslav; Bouř, Petr

2016-03-01

Magnetic circular dichroism (MCD) spectra of C60Cl6, C70Cl10 and C60Cl24 were measured and interpreted using a sum-over-state (SOS) protocol exploiting time dependent density functional theory (TDDFT). Unlike for plain absorption, the MCD spectra exhibited easily recognizable features specific for each chlorinated molecule and appear as a useful tool for chlorofullerene identification. MCD spectrum of C60Cl24 was below 400 nm partially obscured due to scattering and low solubility. In all cases a finer vibrational structure of the electronic bands was observed at longer wavelengths. The TDDFT simulations provided a reasonable basis for interpretation of the most prominent spectral features.

An approach for traffic prohibition sign detection

NASA Astrophysics Data System (ADS)

Li, Qingquan; Xu, Dihong; Li, Bijun; Zeng, Zhe

2006-10-01

This paper presents an off-line traffic prohibition sign detection approach, whose core is based on combination with the color feature of traffic prohibition signs, shape feature and degree of circularity. Matlab-Image-processing toolbox is used for this purpose. In order to reduce the computational cost, a pre-processing of the image is applied before the core. Then, we employ the obvious redness attribute of prohibition signs to coarsely eliminate the non-redness image in the input data. Again, a edge-detection operator, Canny edge detector, is applied to extract the potential edge. Finally, Degree of circularity is used to verdict the traffic prohibition sign. Experimental results show that our systems offer satisfactory performance.

Northeast Arabia Terra

NASA Technical Reports Server (NTRS)

2004-01-01

9 September 2004 Northeastern Arabia Terra is a heavily eroded portion of the martian cratered highlands. Layered rock, containing filled and buried valleys and ancient impact craters, has been eroded such that these once-buried features are now partially exposed at the martian surface. This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows an example of a field of circular and somewhat circular features that once were impact craters that were subsequently filled, buried, then exhumed to form the patterns exhibited here. The image is located near 25.6oN, 290.2oW. The image covers an area approximately 3 km (1.9 mi) across and is illuminated by sunlight from the lower left.

Distinctive Geomorphology of Gas Venting and Near Seafloor Gas Hydrate-Bearing sites

NASA Astrophysics Data System (ADS)

Paull, C. K.; Caress, D. W.; Lundsten, E.; Anderson, K.; Gwiazda, R.; McGann, M. L.; Edwards, B. D.; Riedel, M.; Herguera, J.

2012-12-01

High-resolution multibeam bathymetry and chirp seismic-reflection profiles collected with an Autonomous Underwater Vehicle (AUV) complimented by Remotely Operated Vehicle (ROV) observations and sampling reveal the fine scale geomorphology associated with gas venting and/or near subsurface gas hydrate accumulations along the Pacific North American continental margin (Santa Monica Basin, Hydrate Ridge, Eel River, Barkley Canyon, and Bullseye Vent) and along the transform faults in the Gulf of California. At the 1 m multibeam grid resolution of the new data, distinctive features and textures that are undetectable at lower resolution, show the impact of gas venting, gas hydrate development, and related phenomena on the seafloor morphology. Together a suite of geomorphic characteristics illustrates different stages in the development of seafloor gas venting systems. The more mature and/or impacted areas are associated with widespread exposures of methane-derived carbonates, which form broken and irregular seafloor pavements with karst-like voids in between the cemented blocks. These mature areas also contain elevated features >10 m high and circular seafloor craters with diameters of 3-50 m that appear to be associated with missing sections of the original seafloor. Smaller mound-like features (<10 m in diameter and 1-3 m higher than the surrounding seafloor) occur at multiple sites. Solid lenses of gas hydrate are occasionally exposed along fractures on the sides of these mounds and suggest that these are push-up features associated with gas hydrate growth within the near seafloor sediments. The youngest appearing features are associated with more-subtle (<3 m in diameter and ~0.5 m high) seafloor mounds, the crests of which are crossed with small cracks lined with white bacterial mats. ROV-collected (<1.5 m long) cores obtained from these subtle mounds encountered a hard layer at 30-60 cm sub-bottom. When this layer was penetrated, methane bubbles gushed out and continued to flow out for over an hour. These observations indicate that these small mounds are young features that trap considerable volumes of gas near the seafloor. Together these observations reveal the integrated effect that gas and/or gas hydrate occurrences can have on the seafloor. The existence of gaseous methane within ~1 m of the seafloor has intriguing implications as to the geo-hazard potential of such sites.

Detecting Circular RNAs by RNA Fluorescence In Situ Hybridization.

PubMed

Zirkel, Anne; Papantonis, Argyris

2018-01-01

Fluorescence in situ hybridization (FISH) coupled to high-resolution microscopy is a powerful method for analyzing the subcellular localization of RNA. However, the detection of circular RNAs (circRNAs) using microscopy is challenging because the only feature of a circRNA that can be used for the probe design is its junction. Circular RNAs are expressed at varying levels, and for their efficient monitoring by FISH, background fluorescence levels need to be kept low. Here, we describe a FISH protocol coupled to high-precision localizations using a single fluorescently labeled probe spanning the circRNA junction; this allows circRNA detection in mammalian cells with high signal-to-noise ratios.

Contrasting effects of feature-based statistics on the categorisation and basic-level identification of visual objects.

PubMed

Taylor, Kirsten I; Devereux, Barry J; Acres, Kadia; Randall, Billi; Tyler, Lorraine K

2012-03-01

Conceptual representations are at the heart of our mental lives, involved in every aspect of cognitive functioning. Despite their centrality, a long-standing debate persists as to how the meanings of concepts are represented and processed. Many accounts agree that the meanings of concrete concepts are represented by their individual features, but disagree about the importance of different feature-based variables: some views stress the importance of the information carried by distinctive features in conceptual processing, others the features which are shared over many concepts, and still others the extent to which features co-occur. We suggest that previously disparate theoretical positions and experimental findings can be unified by an account which claims that task demands determine how concepts are processed in addition to the effects of feature distinctiveness and co-occurrence. We tested these predictions in a basic-level naming task which relies on distinctive feature information (Experiment 1) and a domain decision task which relies on shared feature information (Experiment 2). Both used large-scale regression designs with the same visual objects, and mixed-effects models incorporating participant, session, stimulus-related and feature statistic variables to model the performance. We found that concepts with relatively more distinctive and more highly correlated distinctive relative to shared features facilitated basic-level naming latencies, while concepts with relatively more shared and more highly correlated shared relative to distinctive features speeded domain decisions. These findings demonstrate that the feature statistics of distinctiveness (shared vs. distinctive) and correlational strength, as well as the task demands, determine how concept meaning is processed in the conceptual system. Copyright © 2011 Elsevier B.V. All rights reserved.

Circular dichroism in photoelectron images from aligned nitric oxide molecules

DOE PAGES

Sen, Ananya; Pratt, S. T.; Reid, K. L.

2017-05-03

We have used velocity map photoelectron imaging to study circular dichroism of the photoelectron angular distributions (PADs) of nitric oxide following two-color resonanceenhanced two-photon ionization via selected rotational levels of the A 2Σ +, v' = 0 state. By using a circularly polarized pump beam and a counter-propagating, circularly polarized probe beam, cylindrical symmetry is preserved in the ionization process, and the images can be reconstructed using standard algorithms. The VMI set up enables individual ion rotational states to be resolved with excellent collection efficiency, rendering the measurements considerably simpler to perform than previous measurements conducted with a conventional photoelectronmore » spectrometer. The results demonstrate that circular dichroism is observed even when cylindrical symmetry is maintained, and serve as a reminder that dichroism is a general feature of the multiphoton ionization of atoms and molecules. Furthermore, the observed PADs are in good agreement with calculations based on parameters extracted from previous experimental results obtained by using a time-offlight electron spectrometer.« less

Circular dichroism in photoelectron images from aligned nitric oxide molecules

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sen, Ananya; Pratt, S. T.; Reid, K. L.

We have used velocity map photoelectron imaging to study circular dichroism of the photoelectron angular distributions (PADs) of nitric oxide following two-color resonanceenhanced two-photon ionization via selected rotational levels of the A 2Σ +, v' = 0 state. By using a circularly polarized pump beam and a counter-propagating, circularly polarized probe beam, cylindrical symmetry is preserved in the ionization process, and the images can be reconstructed using standard algorithms. The VMI set up enables individual ion rotational states to be resolved with excellent collection efficiency, rendering the measurements considerably simpler to perform than previous measurements conducted with a conventional photoelectronmore » spectrometer. The results demonstrate that circular dichroism is observed even when cylindrical symmetry is maintained, and serve as a reminder that dichroism is a general feature of the multiphoton ionization of atoms and molecules. Furthermore, the observed PADs are in good agreement with calculations based on parameters extracted from previous experimental results obtained by using a time-offlight electron spectrometer.« less

DISTINCTIVE FEATURE THEORY AND NASAL ASSIMILATION IN SPANISH.

ERIC Educational Resources Information Center

HARRIS, JAMES W.

CERTAIN FEATURES IN THE MEXICAN PRONUNCIATION OF NASAL CONSONANTS ARE PRESENTED HERE AND LINGUISTIC GENERALIZATIONS ARE FORMULATED--FIRST IN TERMS OF A CURRENT THEORY OF UNIVERSAL PHONOLOGICAL DISTINCTIVE FEATURES, AND SECOND IN TERMS OF A REVISED DISTINCTIVE FEATURE FRAMEWORK INCORPORATING THE CHANGES PROPOSED BY CHOMSKY AND HALLE IN "THE SOUND…

A transposase strategy for creating libraries of circularly permuted proteins.

PubMed

Mehta, Manan M; Liu, Shirley; Silberg, Jonathan J

2012-05-01

A simple approach for creating libraries of circularly permuted proteins is described that is called PERMutation Using Transposase Engineering (PERMUTE). In PERMUTE, the transposase MuA is used to randomly insert a minitransposon that can function as a protein expression vector into a plasmid that contains the open reading frame (ORF) being permuted. A library of vectors that express different permuted variants of the ORF-encoded protein is created by: (i) using bacteria to select for target vectors that acquire an integrated minitransposon; (ii) excising the ensemble of ORFs that contain an integrated minitransposon from the selected vectors; and (iii) circularizing the ensemble of ORFs containing integrated minitransposons using intramolecular ligation. Construction of a Thermotoga neapolitana adenylate kinase (AK) library using PERMUTE revealed that this approach produces vectors that express circularly permuted proteins with distinct sequence diversity from existing methods. In addition, selection of this library for variants that complement the growth of Escherichia coli with a temperature-sensitive AK identified functional proteins with novel architectures, suggesting that PERMUTE will be useful for the directed evolution of proteins with new functions.

A transposase strategy for creating libraries of circularly permuted proteins

PubMed Central

Mehta, Manan M.; Liu, Shirley; Silberg, Jonathan J.

2012-01-01

A simple approach for creating libraries of circularly permuted proteins is described that is called PERMutation Using Transposase Engineering (PERMUTE). In PERMUTE, the transposase MuA is used to randomly insert a minitransposon that can function as a protein expression vector into a plasmid that contains the open reading frame (ORF) being permuted. A library of vectors that express different permuted variants of the ORF-encoded protein is created by: (i) using bacteria to select for target vectors that acquire an integrated minitransposon; (ii) excising the ensemble of ORFs that contain an integrated minitransposon from the selected vectors; and (iii) circularizing the ensemble of ORFs containing integrated minitransposons using intramolecular ligation. Construction of a Thermotoga neapolitana adenylate kinase (AK) library using PERMUTE revealed that this approach produces vectors that express circularly permuted proteins with distinct sequence diversity from existing methods. In addition, selection of this library for variants that complement the growth of Escherichia coli with a temperature-sensitive AK identified functional proteins with novel architectures, suggesting that PERMUTE will be useful for the directed evolution of proteins with new functions. PMID:22319214

Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina.

PubMed

Bejerman, Nicolás; de Breuil, Soledad; Nome, Claudia

2018-06-06

A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family.

HPLC purification and re-evaluation of chemical identity of two circular bacteriocins, gassericin A and reutericin 6.

PubMed

Arakawa, K; Kawai, Y; Ito, Y; Nakamura, K; Chujo, T; Nishimura, J; Kitazawa, H; Saito, T

2010-04-01

The study aimed for the complete purification and recharacterization of the highly hydrophobic circular bacteriocins, gassericin A and reutericin 6. Gassericin A and reutericin 6 were purified to homogeneity using previously described method and reverse-phase HPLC with an octyl column and eluents of aqueous acetonitrile and 2-propanol. Mass analysis, N-terminal sequencing and bacteriocin assay of the HPLC-purified bacteriocins showed the two bacteriocins had identical seamless circular structures with the same m/z value (5651) of [M + H](+) and both had the same specific activity. D/L-amino acid composition analysis using two distinct methods with the chiral fluorescent derivatization reagents (+)-1-(9-fluorenyl)ethyl chloroformate and O-phthalaldehyde/N-acetyl-L-cystein revealed neither gassericin A nor reutericin 6 contained D-alanine residues contrary to our previous results. Purified gassericin A and reutericin 6 are chemically identical circular molecules containing no D-alanine residues. The HPLC conditions developed in this study will facilitate advanced purification and correct characterization of other highly hydrophobic bacteriocins.

Real-time monitoring of rolling-circle amplification using a modified molecular beacon design

PubMed Central

Nilsson, Mats; Gullberg, Mats; Dahl, Fredrik; Szuhai, Karoly; Raap, Anton K.

2002-01-01

We describe a method to monitor rolling-circle replication of circular oligonucleotides in dual-color and in real-time using molecular beacons. The method can be used to study the kinetics of the polymerization reaction and to amplify and quantify circularized oligonucleotide probes in a rolling-circle amplification (RCA) reaction. Modified molecular beacons were made of 2′-O-Me-RNA to prevent 3′ exonucleolytic degradation by the polymerase used. Moreover, the complement of one of the stem sequences of the molecular beacon was included in the RCA products to avoid fluorescence quenching due to inter-molecular hybridization of neighboring molecular beacons hybridizing to the concatemeric polymerization product. The method allows highly accurate quantification of circularized DNA over a broad concentration range by relating the signal from the test DNA circle to an internal reference DNA circle reporting in a distinct fluorescence color. PMID:12136114

Dispersion analysis and measurement of circular cylindrical wedge-like acoustic waveguides.

PubMed

Yu, Tai-Ho

2015-09-01

This study investigated the propagation of flexural waves along the outer edge of a circular cylindrical wedge, the phase velocities, and the corresponding mode displacements. Thus far, only approximate solutions have been derived because the corresponding boundary-value problems are complex. In this study, dispersion curves were determined using the bi-dimensional finite element method and derived through the separation of variables and the Hamilton principle. Modal displacement calculations clarified that the maximal deformations appeared at the outer edge of the wedge tip. Numerical examples indicated how distinct thin-film materials deposited on the outer surface of the circular cylindrical wedge influenced the dispersion curves. Additionally, dispersion curves were measured using a laser-induced guided wave, a knife-edge measurement scheme, and a two-dimensional fast Fourier transform method. Both the numerical and experimental results correlated closely, thus validating the numerical solution. Copyright © 2015 Elsevier B.V. All rights reserved.

A Tale of 3 Craters

NASA Technical Reports Server (NTRS)

2004-01-01

11 November 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image captures some of the complexity of the martian upper crust. Mars does not simply have an impact-cratered surface, it's upper crust is a cratered volume. Over time, older craters on Mars have been eroded, filled, buried, and in some cases exhumed and re-exposed at the martian surface. The crust of Mars is layered to depths of 10 or more kilometers, and mixed in with the layered bedrock are a variety of ancient craters with diameters ranging from a few tens of meters (a few tens of yards) to several hundred kilometers (more than one or two hundred miles).

The picture shown here captures some of the essence of the layered, cratered volume of the upper crust of Mars in a very simple form. The image shows three distinct circular features. The smallest, in the lower right quarter of the image, is a meteor crater surrounded by a mound of material. This small crater formed within a layer of bedrock that once covered the entire scene, but today is found only in this small remnant adjacent to the crater. The intermediate-sized crater, west (left) of the small one, formed either in the next layer down--that is, below the layer in which the small crater formed--or it formed in some layers that are now removed, but was big enough to penetrate deeply into the rock that is near the surface today. The largest circular feature in the image, in the upper right quarter of the image, is still largely buried. It formed in layers of rock that are below the present surface. Erosion has brought traces of its rim back to the surface of Mars. This picture is located near 50.0oS, 77.8oW, and covers an area approximately 3 km (1.9 mi) across. Sunlight illuminates this October 2004 image from the upper left.

Formation of perched lava ponds on basaltic volcanoes: Interaction between cooling rate and flow geometry allows estimation of lava effusion rates

NASA Technical Reports Server (NTRS)

Wilson, L.; Parfitt, E. A.

1993-01-01

Perched lava ponds are infrequent but distinctive topographic features formed during some basaltic eruptions. Two such ponds, each approximately 150 m in diameter, formed during the 1968 eruption at Napau Crater and the 1974 eruption of Mauna Ulu, both on Kilauea Volcano, Hawaii. Each one formed where a channelized, high volume flux lava flow encountered a sharp reduction of slope: the flow spread out radially and stalled, forming a well-defined terminal levee enclosing a nearly circular lava pond. We describe a model of how cooling limits the motion of lava spreading radially into a pond and compare this with the case of a channelized flow. The difference in geometry has a major effect, such that the size of a pond is a good indicator of the volume flux of the lava forming it. Lateral spreading on distal shallow slopes is a major factor limiting the lengths of lava flows.

2D and 3D characterization of pore defects in die cast AM60

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Zhuofei; CanmetMATERIALS, 183 Longwood Road South, Hamilton L8P 0A5, Ontario Canada; Maurey, Alexandre

2016-04-15

The widespread application of die castings can be hampered due to the potential of large scale porosity to act as nucleation sites for fracture and fatigue. It is therefore important to develop robust approaches to the characterization of porosity providing parameters that can be linked to the material's mechanical properties. We have tackled this problem in a study of the AM60 die cast Mg alloy, using samples extracted from a prototype shock tower. A quantitative characterization of porosity has been undertaken, analyzing porosity in both 2D (using classical metallographic methods) and in 3D (using X-ray computed tomography (XCT)). Metallographic characterizationmore » results show that shrinkage pores and small gas pores can be distinguished based on their distinct geometrical features. Shrinkage pores are irregular with multiple arms, resulting in a form factor less than 0.4. In contrast, gas pores are generally more circular in shape yielding form factors larger than 0.6. XCT provides deeper insight into the shape of pores, although this understanding is limited by the resolution obtainable by laboratory based XCT. It also shows how 2D sectioning can produce artefacts as single complex pores are sectioned into multiple small pores. - Highlights: • Mg (e.g. AM60) die castings may contain large scale porosity that act as nucleation sites for fracture and fatigue • Quantitative characterization of porosity metallography (2D) and X-ray tomography (3D) is used • Shrinkage pores and small gas pores can be distinguished based on their distinct geometrical features. • Shrinkage pores are irregular giving a form factor < 0.4; gas pores are rounder with form factors > 0.6 • XCT enables pore visualization, although limited by the resolution obtainable by laboratory based XCT.« less

Tunable multiband polarization conversion and manipulation in vanadium dioxide-based asymmetric chiral metamaterial

NASA Astrophysics Data System (ADS)

Song, Shichao; Ma, Xiaoliang; Pu, Mingbo; Li, Xiong; Zhang, Zuojun; Gao, Ping; Luo, Xiangang

2018-04-01

Tunable multiband polarization conversion and manipulation are achieved by introducing vanadium dioxide (VO2) into a planar spiral asymmetric chiral metamaterial. Numerical simulations demonstrate that when VO2 is in the insulating state, circularly polarized electromagnetic waves are emitted at two distinct resonant frequencies. When VO2 is in the metallic state, the number of resonant frequencies changes from two to four. In addition, the initial left-handed and right-handed circularly polarized transmitted waves correspondingly transform into right and left ones. Moreover, the surface current distributions are studied in order to investigate the transformation behaviors of both the insulating and metallic states.

Comparison of two satellite imaging platforms for evaluating quasi-circular vegetation patch in the Yellow River Delta, China

NASA Astrophysics Data System (ADS)

Liu, Qingsheng; Liang, Li; Liu, Gaohuan; Huang, Chong

2017-09-01

Vegetation often exists as patch in arid and semi-arid region throughout the world. Vegetation patch can be effectively monitored by remote sensing images. However, not all satellite platforms are suitable to study quasi-circular vegetation patch. This study compares fine (GF-1) and coarse (CBERS-04) resolution platforms, specifically focusing on the quasicircular vegetation patches in the Yellow River Delta (YRD), China. Vegetation patch features (area, shape) were extracted from GF-1 and CBERS-04 imagery using unsupervised classifier (K-Means) and object-oriented approach (Example-based feature extraction with SVM classifier) in order to analyze vegetation patterns. These features were then compared using vector overlay and differencing, and the Root Mean Squared Error (RMSE) was used to determine if the mapped vegetation patches were significantly different. Regardless of K-Means or Example-based feature extraction with SVM classification, it was found that the area of quasi-circular vegetation patches from visual interpretation from QuickBird image (ground truth data) was greater than that from both of GF-1 and CBERS-04, and the number of patches detected from GF-1 data was more than that of CBERS-04 image. It was seen that without expert's experience and professional training on object-oriented approach, K-Means was better than example-based feature extraction with SVM for detecting the patch. It indicated that CBERS-04 could be used to detect the patch with area of more than 300 m2, but GF-1 data was a sufficient source for patch detection in the YRD. However, in the future, finer resolution platforms such as Worldview are needed to gain more detailed insight on patch structures and components and formation mechanism.

Disappearance of the Propontis Regional Dark Albedo Feature on Mars

NASA Astrophysics Data System (ADS)

Lee, Steven W.; Thomas, P. C.; Cantor, B. A.

2013-10-01

The appearance of Propontis, one of many distinct classical dark albedo features on Mars, has been documented by ground-based observers for well over a century; Propontis was once thought to be the location of a “typical Martian canal”. The roughly circular feature (centered at 38°N, 179°W) covers about 500km in north-south extent. Modern spacecraft observations have shown the northern plains in which Propontis is located to include many subdued craters, knobs, and troughs. Observations by the Mars Color Imager (MARCI) onboard the Mars Reconnaissance Orbiter (MRO) have documented dramatic changes in the Propontis feature during August 2009. Daily MARCI mosaics (spatial resolution of 1 km/pixel) revealed extensive dust storm activity in this region over a ten day period (August 16-25, Ls ~ 322°-327°). At this time, the north polar seasonal ice cap was at maximum extent (reaching southward to about 55°N), and dust storm activity was frequently observed southward of the seasonal cap. These storms apparently led to sufficient deposition of bright dust to effectively “erase” the dark Propontis feature - yielding one of the most significant changes in regional albedo since Mars Global Surveyor began routine global mapping in 1997. Only minor changes have been detected over the course of repeated MARCI observations of this region since late-2009 - Propontis has not yet “recovered” to its previous extent and appearance. MRO is expected to provide ongoing MARCI mapping, enhanced with regular Context Imager (CTX, spatial resolution of 6 m/pixel) monitoring. An overview of the accumulated observations to date will be presented, along with interpretation of the magnitude of sediment transport required to account for the observed changes in Propontis.

Influence of burner form and pellet type on domestic pellet boiler performance

NASA Astrophysics Data System (ADS)

Rastvorov, D. V.; Osintsev, K. V.; Toropov, E. V.

2017-10-01

The study presents combustion and emission results obtained using two serial pellet boilers of the same heating capacity 40 kW. These boilers have been designed by producers for domestic conditions of exploitation. The principal difference between boilers was the type of the burner. The study concerns the efficiency and ecological performance difference between burners of circular and rectangular forms. The features of the combustion process in both types of burners were studied when boiler operated with different sorts of pellets. The results suggest that the burner of circular form excels the rectangular form burner. However, there is some difference of NOx emission between circular and rectangular burners.

Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types

PubMed Central

Wang, Peter Lincoln; Lacayo, Norman; Brown, Patrick O.

2012-01-01

Most human pre-mRNAs are spliced into linear molecules that retain the exon order defined by the genomic sequence. By deep sequencing of RNA from a variety of normal and malignant human cells, we found RNA transcripts from many human genes in which the exons were arranged in a non-canonical order. Statistical estimates and biochemical assays provided strong evidence that a substantial fraction of the spliced transcripts from hundreds of genes are circular RNAs. Our results suggest that a non-canonical mode of RNA splicing, resulting in a circular RNA isoform, is a general feature of the gene expression program in human cells. PMID:22319583

Helicity-selective phase-matching and quasi-phase matching of circularly polarized high-order harmonics: towards chiral attosecond pulses

DOE PAGES

Kfir, Ofer; Grychtol, Patrik; Turgut, Emrah; ...

2016-05-23

Phase matching of circularly polarized high-order harmonics driven by counter-rotating bi-chromatic lasers was recently predicted theoretically and demonstrated experimentally. In that work, phase matching was analyzed by assuming that the total energy, spin angular momentum and linear momentum of the photons participating in the process are conserved. Here we propose a new perspective on phase matching of circularly polarized high harmonics. We derive an extended phase matching condition by requiring a new propagation matching condition between the classical vectorial bi-chromatic laser pump and harmonics fields. This allows us to include the influence of the laser pulse envelopes on phase matching.more » Here, we find that the helicity dependent phase matching facilitates generation of high harmonics beams with a high degree of chirality. Indeed, we present an experimentally measured chiral spectrum that can support a train of attosecond pulses with a high degree of circular polarization. Moreover, while the degree of circularity of the most intense pulse approaches unity, all other pulses exhibit reduced circularity. Lastly, this feature suggests the possibility of using a train of attosecond pulses as an isolated attosecond probe for chiral-sensitive experiments.« less

Levels of Processing: A Reply to Eysenck

ERIC Educational Resources Information Center

Lockhart, Robert S.; Craik, Fergus I. M.

1978-01-01

These comments take up the major issues raised in Eyseck's (1978) critique (AA 528 584) of Craik & Lockhart (1972): the problem of circularity in the definition of "depth", the distinction between qualitative and quantitative differences in encoding, and the relationships between the concepts of depth, strength and elaboration. (Editor/RK)

ICTV virus taxonomy profile: Baculoviridae

USDA-ARS?s Scientific Manuscript database

The Baculoviridae is a family of large viruses with circular dsDNA genomes ranging from 80 to 180 kbp. Virions consist of enveloped rod-shaped nucleocapsids and are embedded in distinctive occlusion bodies measuring 0.15 to 15 µm. The occlusion bodies consist of a matrix composed of a single viral...

The picture superiority effect in conceptual implicit memory: a conceptual distinctiveness hypothesis.

PubMed

Hamilton, Maryellen; Geraci, Lisa

2006-01-01

According to leading theories, the picture superiority effect is driven by conceptual processing, yet this effect has been difficult to obtain using conceptual implicit memory tests. We hypothesized that the picture superiority effect results from conceptual processing of a picture's distinctive features rather than a picture's semantic features. To test this hypothesis, we used 2 conceptual implicit general knowledge tests; one cued conceptually distinctive features (e.g., "What animal has large eyes?") and the other cued semantic features (e.g., "What animal is the figurehead of Tootsie Roll?"). Results showed a picture superiority effect only on the conceptual test using distinctive cues, supporting our hypothesis that this effect is mediated by conceptual processing of a picture's distinctive features.

ON THE 2012 OCTOBER 23 CIRCULAR RIBBON FLARE: EMISSION FEATURES AND MAGNETIC TOPOLOGY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Kai; Guo, Yang; Ding, M. D., E-mail: guoyang@nju.edu.cn, E-mail: dmd@nju.edu.cn

2015-06-20

Circular ribbon flares are usually related to spine-fan type magnetic topology containing null points. In this paper, we investigate an X-class circular ribbon flare on 2012 October 23, using the multiwavelength data from the Solar Dynamics Observatory, Hinode, and RHESSI. In Ca ii H emission, the flare showed three ribbons with two highly elongated ones inside and outside a quasi-circular one, respectively. A hot channel was displayed in the extreme-ultraviolet emissions that infers the existence of a magnetic flux rope. Two hard X-ray (HXR) sources in the 12–25 keV energy band were located at the footpoints of this hot channel. Using amore » nonlinear force-free magnetic field extrapolation, we identify three topological structures: (1) a three-dimensional null point, (2) a flux rope below the fan of the null point, and (3) a large-scale quasi-separatrix layer (QSL) induced by the quadrupolar-like magnetic field of the active region. We find that the null point is embedded within the large-scale QSL. In our case, all three identified topological structures must be considered to explain all the emission features associated with the observed flare. Besides, the HXR sources are regarded as the consequence of the reconnection within or near the border of the flux rope.« less

Quasi-periodic Behavior of Mini-disks in Binary Black Holes Approaching Merger

NASA Astrophysics Data System (ADS)

Bowen, Dennis B.; Mewes, Vassilios; Campanelli, Manuela; Noble, Scott C.; Krolik, Julian H.; Zilhão, Miguel

2018-01-01

We present the first magnetohydrodynamic simulation in which a circumbinary disk around a relativistic binary black hole feeds mass to individual accretion disks (“mini-disks”) around each black hole. Mass flow through the accretion streams linking the circumbinary disk to the mini-disks is modulated quasi-periodically by the streams’ interaction with a nonlinear m = 1 density feature, or “lump,” at the inner edge of the circumbinary disk: the stream supplying each mini-disk comes into phase with the lump at a frequency 0.74 times the binary orbital frequency. Because the binary is relativistic, the tidal truncation radii of the mini-disks are not much larger than their innermost stable circular orbits; consequently, the mini-disks’ inflow times are shorter than the conventional estimate and are comparable to the stream modulation period. As a result, the mini-disks are always in inflow disequilibrium, with their masses and spiral density wave structures responding to the stream’s quasi-periodic modulation. The fluctuations in each mini-disk’s mass are so large that as much as 75% of the total mini-disk mass can be contained within a single mini-disk. Such quasi-periodic modulation of the mini-disk structure may introduce distinctive time-dependent features in the binary’s electromagnetic emission.

The interaction between awareness of one's own speech disorder with linguistics variables: distinctive features and severity of phonological disorder.

PubMed

Dias, Roberta Freitas; Melo, Roberta Michelon; Mezzomo, Carolina Lisbôa; Mota, Helena Bolli

2013-01-01

To analyze the possible relationship among the awareness of one's own speech disorder and some aspects of the phonological system, as the number and the type of changed distinctive features, as well as the interaction among the severity of the disorder and the non-specification of distinctive features. The analyzed group has 23 children with diagnosis of speech disorder, aged 5:0 to 7:7. The speech data were analyzed through the Distinctive Features Analysis and classified by the Percentage of Correct Consonants. One also applied the Awareness of one's own speech disorder test. The children were separated in two groups: with awareness of their own speech disorder established (more than 50% of correct identification) and without awareness of their own speech disorder established (less than 50% of correct identification). Finally, the variables of this research were submitted to analysis using descriptive and inferential statistics. The type of changed distinctive features weren't different between the groups, as well as the total of changed features and the severity disorder. However, a correlation between the severity disorder and the non-specification of distinctive features was verified, because the more severe disorders have more changes in these linguistic variables. The awareness of one's own speech disorder doesn't seem to be directly influenced by the type and by the number of changed distinctive features, neither by the speech disorder severity. Moreover, one verifies that the greater phonological disorder severity, the greater the number of changed distinctive features.

The concept of geothermal exploration in west Java based on geophysical data

NASA Astrophysics Data System (ADS)

Gaffar, Eddy Z.

2018-02-01

Indonesia has the largest geothermal prospects in the world and most of them are concentrated in Java and Sumatera. The ones on Sumatra island are generally controlled by Sumatra Fault, either the main fault or the second and the third order fault. Geothermal in Java is still influenced by the subduction of oceanic plates from the south of Java island that forms the southern mountains extending from West Java to East Java. From a geophysical point of view, there is still no clue or concept that accelerates the process of geothermal exploration. The concept is that geothermal is located around the volcano (referred to the volcano as a host) and around the fault (fault as a host). There is another method from remote sensing analysis that often shows circular feature. In a study conducted by LIPI, we proposed a new concept for geothermal exploration which is from gravity analysis using Bouguer anomaly data from Java Island, which also show circular feature. The feature is supposed to be an "ancient crater" or a hidden caldera. Therefore, with this hypothesis, LIPI Geophysics team will try to prove whether this symptom can help accelerate the process of geothermal exploration on the island of West Java. Geophysical methods might simplify the exploration of geothermal prospect in West Java. Around the small circular feature, there are some large geothermal prospect areas such as Guntur, Kamojang, Drajat, Papandayan, Karaha Bodas, Patuha. The concept proposed by our team will try be applied to explore geothermal in Java Island for future work.

Assessment of tissue polarimetric properties using Stokes polarimetric imaging with circularly polarized illumination.

PubMed

Qi, Ji; He, Honghui; Lin, Jianyu; Dong, Yang; Chen, Dongsheng; Ma, Hui; Elson, Daniel S

2018-04-01

Tissue-depolarization and linear-retardance are the main polarization characteristics of interest for bulk tissue characterization, and are normally interpreted from Mueller polarimetry. Stokes polarimetry can be conducted using simpler instrumentation and in a shorter time. Here, we use Stokes polarimetric imaging with circularly polarized illumination to assess the circular-depolarization and linear-retardance properties of tissue. Results obtained were compared with Mueller polarimetry in transmission and reflection geometry, respectively. It is found that circular-depolarization obtained from these 2 methods is very similar in both geometries, and that linear-retardance is highly quantitatively similar for transmission geometry and qualitatively similar for reflection geometry. The majority of tissue circular-depolarization and linear-retardance image information (represented by local image contrast features) obtained from Mueller polarimetry is well preserved from Stokes polarimetry in both geometries. These findings can be referred to for further understanding tissue Stokes polarimetric data, and for further application of Stokes polarimetry under the circumstances where short acquisition time or low optical system complexity is a priority, such as polarimetric endoscopy and microscopy. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Comparative Study of Hand-Sutured versus Circular Stapled Anastomosis for Gastrojejunostomy in Laparoscopy Assisted Distal Gastrectomy.

PubMed

Seo, Su Hyun; Kim, Ki Han; Kim, Min Chan; Choi, Hong Jo; Jung, Ghap Joong

2012-06-01

Mechanical stapler is regarded as a good alternative to the hand sewing technique, when used in gastric reconstruction. The circular stapling method has been widely applied to gastrectomy (open orlaparoscopic), for gastric cancer. We illustrated and compared the hand-sutured method to the circular stapling method, for Billroth-II, in patients who underwent laparoscopy assisted distal gastrectomy for gastric cancer. Between April 2009 and May 2011, 60 patients who underwent laparoscopy assisted distal gastrectomy, with Billroth-II, were enrolled. Hand-sutured Billroth-II was performed in 40 patients (manual group) and circular stapler Billroth-II was performed in 20 patients (stapler group). Clinicopathological features and post-operative outcomes were evaluated and compared between the two groups. Nosignificant differences were observed in clinicopathologic parameters and post-operative outcomes, except in the operation times. Operation times and anastomosis times were significantly shorter in the stapler group (P=0.004 and P<0.001). Compared to the hand-sutured method, the circular stapling method can be applied safely and more efficiently, when performing Billroth-II anastomosis, after laparoscopy assisted distal gastrectomy in patients with gastric cancer.

Mobius Molecules

ERIC Educational Resources Information Center

Eckert, J. M.

1973-01-01

Discusses formation of chemical molecules via Mobius strip intermediates, and concludes that many special physics-chemical properties of the fully closed circular form (1) of polyoma DNA are explainable by this topological feature. (CC)

The circular form of the linear superconducting machine for marine propulsion

NASA Astrophysics Data System (ADS)

Rakels, J. H.; Mahtani, J. L.; Rhodes, R. G.

1981-01-01

The superconducting linear synchronous machine (LSM) is an efficient method of propulsion of advanced ground transport systems and can also be used in marine engineering for the propulsion of large commercial vessels, tankers, and military ships. It provides high torque at low shaft speeds and ease of reversibility; a circular LSM design is proposed as a drive motor. The equipment is compared with the superconducting homopolar motors, showing flexibility in design, built in redundancy features, and reliability.

Pyrene-Containing ortho-Oligo(phenylene)ethynylene Foldamer as a Ratiometric Probe Based on Circularly Polarized Luminescence.

PubMed

Reiné, Pablo; Justicia, Jose; Morcillo, Sara P; Abbate, Sergio; Vaz, Belen; Ribagorda, María; Orte, Ángel; Álvarez de Cienfuegos, Luis; Longhi, Giovanna; Campaña, Araceli G; Miguel, Delia; Cuerva, Juan M

2018-04-20

In this manuscript, we report the first synthesis of an organic monomolecular emitter, which behaves as a circularly polarized luminescence (CPL)-based ratiometric probe. The enantiopure helical ortho-oligo(phenylene)ethynylene ( o-OPE) core has been prepared by a new and efficient macrocyclization reaction. The combination of such o-OPE helical skeleton and a pyrene couple leads to two different CPL emission features in a single structure whose ratio linearly responds to silver(I) concentration.

Spin-orbit optomechanics of optically levitated chiral Bragg microspheres

NASA Astrophysics Data System (ADS)

Tkachenko, Georgiy; Rafayelyan, Mushegh; Brasselet, Etienne

2017-05-01

We explore the spin-orbit nature of the optical torque exerted on chiral liquid-crystal microspheres exhibiting circular Bragg reflection. Experimental investigation relies on the direct optomechanical observation of spinning liquid-crystal droplets immersed in water and held in a circularly polarized laser levitator. More generally, we anticipate that the total angular momentum transfer per photon may depart from the commonly assumed spin-only ±2 ℏ contribution, when the topological features of the illuminated microsphere are taken into account.

PLASMAP: an interactive computational tool for storage, retrieval and device-independent graphic display of conventional restriction maps.

PubMed Central

Stone, B N; Griesinger, G L; Modelevsky, J L

1984-01-01

We describe an interactive computational tool, PLASMAP, which allows the user to electronically store, retrieve, and display circular restriction maps. PLASMAP permits users to construct libraries of plasmid restriction maps as a set of files which may be edited in the laboratory at any time. The display feature of PLASMAP quickly generates device-independent, artist-quality, full-color or monochrome, hard copies or CRT screens of complex, conventional circular restriction maps. PMID:6320096

Integrative analysis of Arabidopsis thaliana transcriptomics reveals intuitive splicing mechanism for circular RNA.

PubMed

Sun, Xiaoyong; Wang, Lin; Ding, Jiechao; Wang, Yanru; Wang, Jiansheng; Zhang, Xiaoyang; Che, Yulei; Liu, Ziwei; Zhang, Xinran; Ye, Jiazhen; Wang, Jie; Sablok, Gaurav; Deng, Zhiping; Zhao, Hongwei

2016-10-01

A new regulatory class of small endogenous RNAs called circular RNAs (circRNAs) has been described as miRNA sponges in animals. Using 16 Arabidopsis thaliana RNA-Seq data sets, we identified 803 circRNAs in RNase R-/non-RNase R-treated samples. The results revealed the following features: Canonical and noncanonical splicing can generate circRNAs; chloroplasts are a hotspot for circRNA generation; furthermore, limited complementary sequences exist not only in introns, but also in the sequences flanking splice sites. The latter finding suggests that multiple combinations between complementary sequences may facilitate the formation of the circular structure. Our results contribute to a better understanding of this novel class of plant circRNAs. © 2016 Federation of European Biochemical Societies.

Base pairing among three cis-acting sequences contributes to template switching during hepadnavirus reverse transcription.

PubMed

Liu, Ning; Tian, Ru; Loeb, Daniel D

2003-02-18

Synthesis of the relaxed-circular (RC) DNA genome of hepadnaviruses requires two template switches during plus-strand DNA synthesis: primer translocation and circularization. Although primer translocation and circularization use different donor and acceptor sequences, and are distinct temporally, they share the common theme of switching from one end of the minus-strand template to the other end. Studies of duck hepatitis B virus have indicated that, in addition to the donor and acceptor sequences, three other cis-acting sequences, named 3E, M, and 5E, are required for the synthesis of RC DNA by contributing to primer translocation and circularization. The mechanism by which 3E, M, and 5E act was not known. We present evidence that these sequences function by base pairing with each other within the minus-strand template. 3E base-pairs with one portion of M (M3) and 5E base-pairs with an adjacent portion of M (M5). We found that disrupting base pairing between 3E and M3 and between 5E and M5 inhibited primer translocation and circularization. More importantly, restoring base pairing with mutant sequences restored the production of RC DNA. These results are consistent with the model that, within duck hepatitis B virus capsids, the ends of the minus-strand template are juxtaposed via base pairing to facilitate the two template switches during plus-strand DNA synthesis.

Experimental study of contact edge roughness on sub-100 nm various circular shapes

NASA Astrophysics Data System (ADS)

Lee, Tae Y.; Ihm, Dongchul; Kang, Hyo C.; Lee, Jum B.; Lee, Byoung H.; Chin, Soo B.; Cho, Do H.; Song, Chang L.

2005-05-01

The measurement of edge roughness has become a hot issue in the semiconductor industry. Especially the contact roughness is being more critical as design rule shrinks. Major vendors offer a variety of features to measure the edge roughness in their CD-SEMs. For the line and space patterns, features such as Line Edge Roughness (LER) and Line Width Roughness (LWR) are available in current CD-SEMs. However the features currently available in commercial CD-SEM cannot provide a proper solution in monitoring the contact roughness. We had introduced a new parameter R, measurement algorithm and definition of contact edge roughness to quantify CER and CSR in previous paper. The parameter, R could provide an alternative solution to monitor contact or island pattern roughness. In this paper, we investigated to assess optimum number of CD measurement (1-D) and fitting method for CER or CSR. The study was based on a circular contact shape. Some new ideas to quantify CER or CSR were also suggested with preliminary experimental results.

The structure of a thermophilic kinase shapes fitness upon random circular permutation

PubMed Central

Jones, Alicia M.; Mehta, Manan M.; Thomas, Emily E.; Atkinson, Joshua T.; Segall-Shapiro, Thomas H.; Liu, Shirley; Silberg, Jonathan J.

2016-01-01

Proteins can be engineered for synthetic biology through circular permutation, a sequence rearrangement where native protein termini become linked and new termini are created elsewhere through backbone fission. However, it remains challenging to anticipate a protein’s functional tolerance to circular permutation. Here, we describe new transposons for creating libraries of randomly circularly permuted proteins that minimize peptide additions at their termini, and we use transposase mutagenesis to study the tolerance of a thermophilic adenylate kinase (AK) to circular permutation. We find that libraries expressing permuted AK with either short or long peptides amended to their N-terminus yield distinct sets of active variants and present evidence that this trend arises because permuted protein expression varies across libraries. Mapping all sites that tolerate backbone cleavage onto AK structure reveals that the largest contiguous regions of sequence that lack cleavage sites are proximal to the phosphotransfer site. A comparison of our results with a range of structure-derived parameters further showed that retention of function correlates to the strongest extent with the distance to the phosphotransfer site, amino acid variability in an AK family sequence alignment, and residue-level deviations in superimposed AK structures. Our work illustrates how permuted protein libraries can be created with minimal peptide additions using transposase mutagenesis, and they reveal a challenge of maintaining consistent expression across permuted variants in a library that minimizes peptide additions. Furthermore, these findings provide a basis for interpreting responses of thermophilic phosphotransferases to circular permutation by calibrating how different structure-derived parameters relate to retention of function in a cellular selection. PMID:26976658

The Structure of a Thermophilic Kinase Shapes Fitness upon Random Circular Permutation.

PubMed

Jones, Alicia M; Mehta, Manan M; Thomas, Emily E; Atkinson, Joshua T; Segall-Shapiro, Thomas H; Liu, Shirley; Silberg, Jonathan J

2016-05-20

Proteins can be engineered for synthetic biology through circular permutation, a sequence rearrangement in which native protein termini become linked and new termini are created elsewhere through backbone fission. However, it remains challenging to anticipate a protein's functional tolerance to circular permutation. Here, we describe new transposons for creating libraries of randomly circularly permuted proteins that minimize peptide additions at their termini, and we use transposase mutagenesis to study the tolerance of a thermophilic adenylate kinase (AK) to circular permutation. We find that libraries expressing permuted AKs with either short or long peptides amended to their N-terminus yield distinct sets of active variants and present evidence that this trend arises because permuted protein expression varies across libraries. Mapping all sites that tolerate backbone cleavage onto AK structure reveals that the largest contiguous regions of sequence that lack cleavage sites are proximal to the phosphotransfer site. A comparison of our results with a range of structure-derived parameters further showed that retention of function correlates to the strongest extent with the distance to the phosphotransfer site, amino acid variability in an AK family sequence alignment, and residue-level deviations in superimposed AK structures. Our work illustrates how permuted protein libraries can be created with minimal peptide additions using transposase mutagenesis, and it reveals a challenge of maintaining consistent expression across permuted variants in a library that minimizes peptide additions. Furthermore, these findings provide a basis for interpreting responses of thermophilic phosphotransferases to circular permutation by calibrating how different structure-derived parameters relate to retention of function in a cellular selection.

Two Episodes of Magnetic Reconnections during a Confined Circular-ribbon Flare

NASA Astrophysics Data System (ADS)

Li, Ting; Yang, Shuhong; Zhang, Qingmin; Hou, Yijun; Zhang, Jun

2018-06-01

We analyze a unique event with an M1.8 confined circular-ribbon flare on 2016 February 13, with successive formations of two circular ribbons at the same location. The flare had two distinct phases of UV and extreme ultraviolet emissions with an interval of about 270 s, of which the second peak was energetically more important. The first episode was accompanied by the eruption of a mini-filament and the fast elongation motion of a thin circular ribbon (CR1) along the counterclockwise direction at a speed of about 220 km s‑1. Two elongated spine-related ribbons were also observed, with the inner ribbon co-temporal with CR1 and the remote brightenings forming ∼20 s later. In the second episode, another mini-filament erupted and formed a blowout jet. The second circular ribbon and two spine-related ribbons showed similar elongation motions with that during the first episode. The extrapolated three-dimensional coronal magnetic fields reveal the existence of a fan-spine topology, together with a quasi-separatrix layer (QSL) halo surrounding the fan plane and another QSL structure outlining the inner spine. We suggest that continuous null-point reconnection between the filament and ambient open field occurs in each episode, leading to the sequential opening of the filament and significant shifts of the fan plane footprint. For the first time, we propose a compound eruption model of circular-ribbon flares consisting of two sets of successively formed ribbons and eruptions of multiple filaments in a fan-spine-type magnetic configuration.

Creating fair lineups for suspects with distinctive features.

PubMed

Zarkadi, Theodora; Wade, Kimberley A; Stewart, Neil

2009-12-01

In their descriptions, eyewitnesses often refer to a culprit's distinctive facial features. However, in a police lineup, selecting the only member with the described distinctive feature is unfair to the suspect and provides the police with little further information. For fair and informative lineups, the distinctive feature should be either replicated across foils or concealed on the target. In the present experiments, replication produced more correct identifications in target-present lineups--without increasing the incorrect identification of foils in target-absent lineups--than did concealment. This pattern, and only this pattern, is predicted by the hybrid-similarity model of recognition.

Risk factors associated with delayed gastric emptying after subtotal gastrectomy with Billroth-I anastomosis using circular stapler for early gastric cancer patients.

PubMed

Kim, Ki Han; Kim, Min Chan; Jung, Ghap Joong

2012-11-01

Gastric surgery may potentiate delayed gastric emptying. Billroth I gastroduodenostomy using a circular stapler is the most preferable reconstruction method. The purpose of this study is to analyze the risk factors associated with delayed gastric emptying after radical subtotal gastrectomy with Billroth I anastomosis using a stapler for early gastric cancer. Three hundred and seventy-eight patients who underwent circular stapled Billroth I gastroduodenostomy after subtotal gastrectomy due to early gastric cancer were analyzed retrospectively. One hundred and eighty-two patients had Billroth I anastomosis using a 25 mm diameter circular stapler, and 196 patients had anastomosis with a 28 or 29 mm diameter circular stapler. Clinicopathological features and postoperative outcomes were evaluated and compared between the two groups. Delayed gastric emptying was diagnosed by symptoms and simple abdomen X-ray with or without upper gastrointestinal series or endoscopy. Postoperative delayed gastric emptying was found in 12 (3.2%) of the 378 patients. Among all the variables, distal margin and circular stapler diameter were significantly different between the cases with delayed gastric emptying and no delayed gastric emptying. There were statistically significant differences in sex, body mass index, comorbidity, complication, and operation type according to circular stapler diameter. In both univariate and multivariate logistic regression analyses, only the stapler diameter was found to be a significant factor affecting delayed gastric emptying (P = 0.040). In this study, the circular stapler diameter was one of the most significant predictable factors of delayed gastric emptying for Billroth I gastroduodenostomy. The use of a 28 or 29 mm diameter circular stapler rather than a 25 mm diameter stapler in stapled gastroduodenostomy for early gastric cancer can reduce postoperative delayed gastric emptying associated with anastomosic stenosis or edema with relative safety.

Ulysses Patera

NASA Technical Reports Server (NTRS)

2002-01-01

[figure removed for brevity, see original site] (Released 18 July 2002) It is helpful to look at the context for this THEMIS image, which covers a large area over the summit of Ulysses Patera. Ulysses Patera is one of the many volcanoes that make up the giant Tharsis volcanic province, although Ulysses itself is fairly small in comparison to the other volcanoes in this area. In the context image, there are 3 circular features near the top of the volcano. The large, central feature is called a 'caldera', and is the result of volcanic activity at Ulysses. The other two circular features are impact craters. The THEMIS image primarily spans across the central caldera, but also covers a portion of the northernmost impact crater. We know that the large central caldera must have formed earlier than the two craters, because its circular form has been cut by the smaller crater rims. In the THEMIS image, there are stair-stepping plateaus in the northern portion of the image. These are part of the rim of the northern crater, and are caused by collapse or subsidence after the impact event. Just to the south of this crater, 'rayed' patterns can be seen on part of the caldera floor. The rayed pattern is most likely due to a landslide of material down the crater rim slope. Another possibility is that the impact that formed the northern crater caused material to be ejected radially, and then parts of the ejecta have either been buried or eroded away. Other signs of mass movement events in this image are dark streaks, caused by dust avalanches, visible in the caldera's northern wall. In the central portion of the image, there are two lobe-shaped features-one overlaps the other-that appear to have flowed westward. It is likely that these features are ejecta lobes, because they are located adjacent to the southeastern crater (see context image). The fluidized appearance of these ejecta lobes is probably due to a significant amount of ice or water being present in the soil at the time of impact. We know that the southeastern crater must have formed after the northern crater, because the fluidized ejecta lobe overlies the rayed pattern. A close-up look at the fluidized ejecta lobes reveals a different surface 'texture' than the surrounding caldera floor. This could be due to compressional features that formed during the lobe emplacement, or to contrasting surface properties that cause the flows to be eroded differently than the caldera floor. In the lower portion of the image, there is a cluster of small circular features in the southernmost part of the central caldera. These features may be layered material that has since been eroded into circular plateaus, or they may be degraded volcanic cones, which would indicate a later stage of smaller-scale volcanism within the caldera. Volcanic cones are common in many calderas on Earth, and are formed after the initial stage of volcanic activity in that caldera. Finally, in the southern wall of the caldera, there is classic 'spur-and-gully' morphology. This type of morphology is often formed on steep slopes, where variations in wall resistance cause the surface to be eroded more easily in some areas.

Earth Observations taken by the Expedition 18 Crew

NASA Image and Video Library

2008-12-29

ISS018-E-015908 (29 Dec. 2008) --- The Biokovo Range in Croatia is featured in this image photographed by an Expedition 18 crewmember on the International Space Station. The Biokovo Range in Croatia is part of the Dinaric Alps extending northwest-southeast along the coastline of the Adriatic Sea. The Range itself is the location of a national park; the nearby city of Makarska, located between the mountains and the sea, is a popular tourist destination. The highest peak in the Biokovo Range, Sveti Jure (1762 meters above sea level), is reachable by road or hiking. The Range is comprised mainly of Mesozoic age carbonate rocks ? primarily limestone, a sedimentary rock type rich in calcium carbonate ? deposited in relatively warm, shallow waters. Later tectonic processes uplifted and exposed the carbonate rocks to erosion ? leading to a distinctive geological surface known as karst topography. Karst topography originates due to the chemical erosion of carbonate rocks by acids formed in surface and subsurface water; as the rock is dissolved, underground networks of drainages and caves form. As more underground void space develops through time, the overlaying rock and soil collapses to form a variety of landforms including sinkholes, blind valleys, and towers. In the Biokovo Range, much of the karst surface has a pitted appearance, made easily visible by early morning light in this astronaut photograph. The pitted appearance is produced by numerous circular or semi-circular collapse valleys known locally as vrtace. While this image captures Sveti Jure covered with snow, there are no glaciers or ice fields in the Biokovo Range.

Rhythmic contractility in the hepatic portal "corkscrew" vein of the rat snake.

PubMed

Conklin, Daniel J; Lillywhite, Harvey B; Bishop, Barbara; Hargens, Alan R; Olson, Kenneth R

2009-03-01

Terrestrial, but not aquatic, species of snakes have hepatic portal veins with a corkscrew morphology immediately posterior of the liver. Relatively large volumes of venous blood are associated with this region, and the corkscrew vein has been proposed to function as a bidirectional valve that impedes gravitational shifts of intravascular volume. To better understand the functional significance of the corkscrew anatomy, we investigated the histology and contractile mechanisms in isolated corkscrew segments of the hepatic portal vein of a yellow rat snake (Pantherophis obsoletus). Morphologically, the corkscrew portal vein is here shown to have two distinct layers of smooth muscle--an inner circular layer, and an outer longitudinal layer, separated by a layer of collagen--whereas only a single circular layer of smooth muscle is present in the adjacent posterior caval vein. Low frequency (approximately 0.3 cycles*min(-1)) spontaneous and catecholamine-induced rhythms were observed in 11% and 89% of portal vein segments, respectively, but neither spontaneous nor agonist-induced cycling was observed in adjacent posterior (non-corkscrew) caval veins. Catecholamines, angiotensin II, or stretch increased the amplitude and/or frequency of contractile cycles. Ouabain, verapamil or indomethacin, but not tetrodotoxin, alpha-, or ss-adrenergic receptor antagonists, inhibited cyclical contractions indicating a dependence of these cycles on Na+/K+ ATPase, extracellular Ca2+ and prostanoid(s). These data suggest that the rhythmic contractility of the corkscrew segment of the ophidian portal vein may act in conjunction with its morphological features to improve venous return and to prevent retrograde shifts of blood that might otherwise pool in posterior veins.

Direction-of-arrival estimation for a uniform circular acoustic vector-sensor array mounted around a cylindrical baffle

NASA Astrophysics Data System (ADS)

Yang, DeSen; Zhu, ZhongRui

2012-12-01

This work investigates the direction-of-arrival (DOA) estimation for a uniform circular acoustic Vector-Sensor Array (UCAVSA) mounted around a cylindrical baffle. The total pressure field and the total particle velocity field near the surface of the cylindrical baffle are analyzed theoretically by applying the method of spatial Fourier transform. Then the so-called modal vector-sensor array signal processing algorithm, which is based on the decomposed wavefield representations, for the UCAVSA mounted around the cylindrical baffle is proposed. Simulation and experimental results show that the UCAVSA mounted around the cylindrical baffle has distinct advantages over the same manifold of traditional uniform circular pressure-sensor array (UCPSA). It is pointed out that the acoustic Vector-Sensor (AVS) could be used under the condition of the cylindrical baffle and that the UCAVSA mounted around the cylindrical baffle could also combine the anti-noise performance of the AVS with spatial resolution performance of array system by means of modal vector-sensor array signal processing algorithms.

A newly discovered impact crater in Titan's Senkyo: Cassini VIMS observations and comparison with other impact features

USGS Publications Warehouse

Buratti, B.J.; Sotin, Christophe; Lawrence, K.; Brown, R.H.; Le, Mouelic S.; Soderblom, J.M.; Barnes, J.; Clark, R.N.; Baines, K.H.; Nicholson, P.D.

2012-01-01

Senkyo is an equatorial plain on Titan filled with dunes and surrounded by hummocky plateaus. During the Titan targeted flyby T61 on August 25, 2009, the Cassini Visual and Infrared Mapping Spectrometer (VIMS) onboard the Cassini spacecraft observed a circular feature, centered at 5.4?? N and 341??W, that superimposes the dune fields and a bright plateau. This circular feature, which has been named Paxsi by the International Astronomical Union, is 120??10 km in diameter (measured from the outer edge of the crater rim) and exhibits a central bright area that can be interpreted as the central peak or pit of an impact crater. Although there are only a handful of certain impact craters on Titan, there are two other craters that are of similar size to this newly discovered feature and that have been studied by VIMS: Sinlap (Le Mou??lic et al, 2008) and Selk (Soderblom et al, 2010). Sinlap is associated with a large downwind, fan-like feature that may have been formed from an impact plume that rapidly expanded and deposited icy particles onto the surface. Although much of the surrounding region is covered with dunes, the plume region is devoid of dunes. The formation process of Selk also appears to have removed (or covered up) dunes from parts of the adjacent dune-filled terrain. The circular feature on Senkyo is quite different: there is no evidence of an ejecta blanket and the crater itself appears to be infilled with dune material. The rim of the crater appears to be eroded by fluvial processes; at one point the rim is breached. The rim is unusually narrow, which may be due to mass wasting on its inside and subsequent infill by dunes. Based on these observations, we interpret this newly discovered feature to be a more eroded crater than both Sinlap and Selk. Paxsi may have formed during a period when Titan was warmer and more ductile than it is currently. ?? 2011 Elsevier Ltd. All rights reserved.

Richat Structure, Mauritania

NASA Image and Video Library

2004-06-17

This prominent circular feature, known as the Richat Structure, in the Sahara desert of Mauritania is often noted by astronauts because it forms a conspicuous bull-eye on the otherwise rather featureless expanse of the desert.

Terahertz Absorption and Circular Dichroism Spectroscopy of Solvated Biopolymers

NASA Astrophysics Data System (ADS)

Xu, Jing; Plaxco, Kevin; Allen, S. James

2006-03-01

Biopolymers are expected to exhibit broad spectral features in the terahertz frequency range, corresponding to their functionally relevant, global and sub-global collective vibrational modes with ˜ picosecond timescale. Recent advances in terahertz technology have stimulated researchers to employ terahertz absorption spectroscopy to directly probe these postulated collective modes. However, these pioneering studies have been limited to dry and, at best, moist samples. Successful isolation of low frequency vibrational activities of solvated biopolymers in their natural water environment has remained elusive, due to the overwhelming attenuation of the terahertz radiation by water. Here we have developed a terahertz absorption and circular dichroism spectrometer suitable for studying biopolymers in biologically relevant water solutions. We have precisely isolated, for the first time, the terahertz absorption of solvated prototypical proteins, Bovine Serum Albumin and Lysozyme, and made important direct comparison to the existing molecular dynamic simulations and normal mode calculations. We have also successfully demonstrated the magnetic circular dichroism in semiconductors, and placed upper bounds on the terahertz circular dichroism signatures of prototypical proteins in water solution.

Density Fluctuation in Asymmetric Nozzle Plumes and Correlation with Far Field Noise

NASA Technical Reports Server (NTRS)

Panda, J.; Zaman, K. B. M. Q.

2001-01-01

A comparative experimental study of air density fluctuations in the unheated plumes of a circular, 4-tabbed-circular, chevron-circular and 10-lobed rectangular nozzles was performed at a fixed Mach number of 0.95 using a recently developed Rayleigh scattering based technique. Subsequently, the flow density fluctuations are cross-correlated with the far field sound pressure fluctuations to determine sources for acoustics emission. The nearly identical noise spectra from the baseline circular and the chevron nozzles are found to be in agreement with the similarity in spreading, turbulence fluctuations, and flow-sound correlations measured in the plumes. The lobed nozzle produced the least low frequency noise, in agreement with the weakest overall density fluctuations and flow-sound correlation. The tabbed nozzle took an intermediate position in the hierarchy of noise generation, intensity of turbulent fluctuation and flow-sound correlation. Some of the features in the 4-tabbed nozzle are found to be explainable in terms of splitting of the jet in a central large core and 4 side jetlets.

Photographer : JPL Range : 862,200 km. ( 500,000 miles ) This photograph shows subspacecraft

NASA Technical Reports Server (NTRS)

1979-01-01

Photographer : JPL Range : 862,200 km. ( 500,000 miles ) This photograph shows subspacecraft longitude of approximately 146 degrees of Jupiter's moon Io. Circular features are seen that may be meteorite impact craters or features of internal origins. Irregular depressions are seen that indicate surface modifications. The bright irregular patches appear to be younger deposits masking the surface detail.

Terahertz circular dichroism spectroscopy of biomolecules

NASA Astrophysics Data System (ADS)

Xu, Jing; Galan, Jhenny; Ramian, Gerald; Savvidis, Pavlos; Scopatz, Anthony; Birge, Robert R.; Allen, S. James; Plaxco, Kevin

2004-02-01

Biopolymers such as proteins, DNA and RNA fold into large, macromolecular chiral structures. As charged macromolecules, they absorb strongly in the terahertz due to large-scale collective vibrational modes; as chiral objects, this absorption should be coupled with significant circular dichroism. Terahertz circular dichroism (TCD) is potentially important as a biospecific sensor, unobscured by spectral features related to abiological material. We have constructed atomistic simulations and elastic continuum models of TCD. These models estimate the magnitude of the TCD and the relation between TCD spectroscopic signatures (zero crossings) and the structure, charge distribution and mechanical properties of biomaterials. A broad band TCD spectrometer based on a polarizing interferometer is developed to explore TCD in biomolecules in aqueous solution. Preliminary results on TCD in lysozyme in water at several terahertz frequencies is presented.

Identification and characterization of circular RNAs in zebrafish.

PubMed

Shen, Yudong; Guo, Xianwu; Wang, Weimin

2017-01-01

Circular RNA (circRNA), a class of RNAs with circular structure, has received little attention until recently, when some new features and functions were discovered. In the present study, we sequenced circRNAs in zebrafish (Danio rerio) and identified 3868 circRNAs using three algorithms (find_circ, CIRI, segemehl). The analysis of microRNA target sites on circRNAs shows that some circRNAs may function as miRNA sponges. Furthermore, we identified the existence of reverse complementary sequences in the flanking regions of only 25 (2.64%) exonic circRNAs, indicating that the mechanism of zebrafish exonic circRNA biogenesis might be different from that in mammals. Moreover, 1122 (29%) zebrafish circRNA sequences showed homology with human, mouse and coelacanth circRNAs. © 2016 Federation of European Biochemical Societies.

Comparative Study of Hand-Sutured versus Circular Stapled Anastomosis for Gastrojejunostomy in Laparoscopy Assisted Distal Gastrectomy

PubMed Central

Seo, Su Hyun; Kim, Min Chan; Choi, Hong Jo; Jung, Ghap Joong

2012-01-01

Purpose Mechanical stapler is regarded as a good alternative to the hand sewing technique, when used in gastric reconstruction. The circular stapling method has been widely applied to gastrectomy (open orlaparoscopic), for gastric cancer. We illustrated and compared the hand-sutured method to the circular stapling method, for Billroth-II, in patients who underwent laparoscopy assisted distal gastrectomy for gastric cancer. Materials and Methods Between April 2009 and May 2011, 60 patients who underwent laparoscopy assisted distal gastrectomy, with Billroth-II, were enrolled. Hand-sutured Billroth-II was performed in 40 patients (manual group) and circular stapler Billroth-II was performed in 20 patients (stapler group). Clinicopathological features and post-operative outcomes were evaluated and compared between the two groups. Results Nosignificant differences were observed in clinicopathologic parameters and post-operative outcomes, except in the operation times. Operation times and anastomosis times were significantly shorter in the stapler group (P=0.004 and P<0.001). Conclusions Compared to the hand-sutured method, the circular stapling method can be applied safely and more efficiently, when performing Billroth-II anastomosis, after laparoscopy assisted distal gastrectomy in patients with gastric cancer. PMID:22792525

Airbag Tracks on Mars

NASA Technical Reports Server (NTRS)

2004-01-01

The circular shapes seen on the martian surface in these images are 'footprints' left by the Mars Exploration Rover Opportunity's airbags during landing as the spacecraft gently rolled to a stop. Opportunity landed at approximately 9:05 p.m. PST on Saturday, Jan. 24, 2004, Earth-received time. The circular region of the flower-like feature on the right is about the size of a basketball. Scientists are studying the prints for more clues about the makeup of martian soil. The images were taken at Meridiani Planum, Mars, by the panoramic camera on the Mars Exploration Rover Opportunity.

Empirical velocity profiles for galactic rotation curves

NASA Astrophysics Data System (ADS)

López Fune, E.

2018-04-01

A unified parametrization of the circular velocity, which accurately fits 850 galaxy rotation curves without needing in advance the knowledge of the luminous matter components, nor a fixed dark matter halo model, is proposed. A notable feature is that the associated gravitational potential increases with the distance from the galaxy centre, giving rise to a length-scale indicating a finite size of a galaxy, and after, the Keplerian fall-off of the parametrized circular velocity is recovered according to Newtonian gravity, making possible the estimation of the total mass enclosed by the galaxy.

Energy barriers, entropy barriers, and non-Arrhenius behavior in a minimal glassy model.

PubMed

Du, Xin; Weeks, Eric R

2016-06-01

We study glassy dynamics using a simulation of three soft Brownian particles confined to a two-dimensional circular region. If the circular region is large, the disks freely rearrange, but rearrangements are rarer for smaller system sizes. We directly measure a one-dimensional free-energy landscape characterizing the dynamics. This landscape has two local minima corresponding to the two distinct disk configurations, separated by a free-energy barrier that governs the rearrangement rate. We study several different interaction potentials and demonstrate that the free-energy barrier is composed of a potential-energy barrier and an entropic barrier. The heights of both of these barriers depend on temperature and system size, demonstrating how non-Arrhenius behavior can arise close to the glass transition.

Blackcurrant Leaf Chlorosis Associated Virus: Evidence of the Presence of Circular RNA during Infections.

PubMed

James, Delano; Phelan, James; Sanderson, Daniel

2018-05-15

Blackcurrant leaf chlorosis associated virus (BCLCaV) was detected recently by next-generation sequencing (NGS) and a new and distinct species in the genus Idaeovirus was proposed. Analysis of NGS-derived paired-end reads revealed the existence of bridge reads encompassing the 3'-terminus and 5'-terminus of RNA-2 or RNA-3 of BCLCaV. The full RNA-2 or RNA-3 could be amplified using outward facing or abutting primers; also, RNA-2/RNA-3 could be detected even after three consecutive RNase R enzyme treatments, with denaturation at 95 °C preceding each digestion. Evidence was obtained indicating that there are circular forms of BCLCaV RNA-2 and RNA-3.

Base pairing among three cis-acting sequences contributes to template switching during hepadnavirus reverse transcription

PubMed Central

Liu, Ning; Tian, Ru; Loeb, Daniel D.

2003-01-01

Synthesis of the relaxed-circular (RC) DNA genome of hepadnaviruses requires two template switches during plus-strand DNA synthesis: primer translocation and circularization. Although primer translocation and circularization use different donor and acceptor sequences, and are distinct temporally, they share the common theme of switching from one end of the minus-strand template to the other end. Studies of duck hepatitis B virus have indicated that, in addition to the donor and acceptor sequences, three other cis-acting sequences, named 3E, M, and 5E, are required for the synthesis of RC DNA by contributing to primer translocation and circularization. The mechanism by which 3E, M, and 5E act was not known. We present evidence that these sequences function by base pairing with each other within the minus-strand template. 3E base-pairs with one portion of M (M3) and 5E base-pairs with an adjacent portion of M (M5). We found that disrupting base pairing between 3E and M3 and between 5E and M5 inhibited primer translocation and circularization. More importantly, restoring base pairing with mutant sequences restored the production of RC DNA. These results are consistent with the model that, within duck hepatitis B virus capsids, the ends of the minus-strand template are juxtaposed via base pairing to facilitate the two template switches during plus-strand DNA synthesis. PMID:12578983

South Polar Surface

NASA Image and Video Library

2011-07-14

It is high summer as NASA 2001 Mars Odyssey spacecraft captures this image of the South Pole of Mars. The circular surface features may look like swiss cheese, but how they form, coalesce, and disappear is not fully understood.

Close-up View of Yavine Corona

NASA Image and Video Library

1998-06-03

The view from NASA's Magellan spacecraft shows Yavine Corona, looking northeast. Coronae are roughly circular, volcanic features believed to form over hot upwellings of magma within the Venusian mantle. http://photojournal.jpl.nasa.gov/catalog/PIA00098

A search for Potential Impact Sites in Southern Argentina

NASA Astrophysics Data System (ADS)

Rocca, M. C. L.

The Southern part of Argentina is composed of five Provinces; Tierra del Fuego, Santa Cruz, Chubut, Rio Negro and Neuquen. A search for potential impact sites was performed by the author through the examination of 76 color LANDSAT satellite images ( 1:250,000 - resolution = 250 meters ) at the Instituto Geografico Militar ( IGM ) of Buenos Aires city. When a potential candidate was found a more detailed study of the site was done. If available the radar X-SAR satellite images of the Deutsche Forschungsanstalt fur Luft-und Raumfahrt, (DLR), Berlin, Germany , were also examined. The final step was to perform a review of the available published geologic information of each site at the Servicio Geologico y Minero Argentino ( SEGEMAR ), ( =Geological Survey of Argentina ), in Buenos Aires. The resulting catalogue contains information about sites where possible simple crater or complex impact structures could be present. Each case demands future detailed and `in situ' research by an impact cratering specialist. --Tierra del Fuego: TF1 ) Ushuaia 5569-II, No 218. Cerro Taarsh, Estancia San Justo. Possible complex structure. Semi-circular area of concentric low ridges. Estimated diameter : 12 km. Probably very eroded. --Santa Cruz: SC1 ) Gobernador Gregores 4969-I, No 127. Estancia La Aragonesa Possible eroded complex structure. Circular area of low ridges, estimated diameter: 10 km.. Bull's eye like morphology. SC2 ) Gobernador Gregores 4969-I, No 127. Gran Altiplanicie Central. Possible simple crater in basalts. Diameter: 1 km.. SC3 ) Tres Lagos 4972-IV, No 106. Meseta del Bagual Chico. Possible perfectly circular simple crater in basalts. Diameter: 1.0 km.. SC4 )Paso Rio Bote 5172-II, No 20. Rio Pelque, Ruta Provincial No 5. A circular bowl-shaped structure is present on fluvial deposits of pleistocenic age. Diameter: 3.5 km.. SC5 ) Caleta Olivia 4769-II, No 28. North of Cerro Doce Grande. Possible complex structure of concentric circular rings of ridges. SC6 ) Caleta Olivia 4769-II, No 28. NW shore of Laguna Sirven. Possible simple crater of 2.5 km. Most probably, the circular crater is a basaltic caldera of upper Miocene's age. SC7 ) Destacamento La Maria 4769-II, No 188. Estancia Los Mellizos, Ruta Provincial No 39. Possible eroded and covered complex structure. In this site there is a semi-circular feature of ridges and low hills. Diameter: 15 km. Topographic map shows the same pattern. The DLR's X-SAR images show a clear semi-circular feature of ridges and hills in this site. SC8 ) Hipolito Irigoyen 4772-IV, No 116. Meseta del Lago Buenos Aires. Possible perfectly circular simple crater of 1 Km. Neuquen: N1 ) Picun Leufu 3969-III No 14. Meseta de la Barda Negra. Nice perfectly circular possible simple crater in black Miocene's ( 14-10 Ma ) basaltic plateau. Diameter: 1.5 km.. Possible raised rim. Fresh aspect. No visible lava flows .

Three-dimensional polarization states of monochromatic light fields.

PubMed

Azzam, R M A

2011-11-01

The 3×1 generalized Jones vectors (GJVs) [E(x) E(y) E(z)](t) (t indicates the transpose) that describe the linear, circular, and elliptical polarization states of an arbitrary three-dimensional (3-D) monochromatic light field are determined in terms of the geometrical parameters of the 3-D vibration of the time-harmonic electric field. In three dimensions, there are as many distinct linear polarization states as there are points on the surface of a hemisphere, and the number of distinct 3-D circular polarization states equals that of all two-dimensional (2-D) polarization states on the Poincaré sphere, of which only two are circular states. The subset of 3-D polarization states that results from the superposition of three mutually orthogonal x, y, and z field components of equal amplitude is considered as a function of their relative phases. Interesting contours of equal ellipticity and equal inclination of the normal to the polarization ellipse with respect to the x axis are obtained in 2-D phase space. Finally, the 3×3 generalized Jones calculus, in which elastic scattering (e.g., by a nano-object in the near field) is characterized by the 3-D linear transformation E(s)=T E(i), is briefly introduced. In such a matrix transformation, E(i) and E(s) are the 3×1 GJVs of the incident and scattered waves and T is the 3×3 generalized Jones matrix of the scatterer at a given frequency and for given directions of incidence and scattering.

Venus - 3D Perspective View of Latona Corona and Dali Chasma

NASA Technical Reports Server (NTRS)

1992-01-01

This computer-generated perspective view of Latona Corona and Dali Chasma on Venus shows Magellan radar data superimposed on topography. The view is from the northeast and vertical exaggeration is 10 times. Exaggeration of relief is a common tool scientists use to detect relationships between structure (i.e. faults and fractures) and topography. Latona Corona, a circular feature approximately 1,000 kilometers (620 miles) in diameter whose eastern half is shown at the left of the image, has a relatively smooth, radar-bright raised rim. Bright lines or fractures within the corona appear to radiate away from its center toward the rim. The rest of the bright fractures in the area are associated with the relatively deep (approximately 3 kilometers or 1.9 miles) troughs of Dali Chasma. The Dali and Diana Chasma system consist of deep troughs that extend for 7,400 kilometers (4,588 miles) and are very distinct features on Venus. Those chasma connect the Ovda and Thetis highlands with the large volcanoes at Atla Regio and thus are considered to be the 'Scorpion Tail' of Aphrodite Terra. The broad, curving scarp resembles some of Earth's subduction zones where crustal plates are pushed over each other. The radar-bright surface at the highest elevation along the scarp is similar to surfaces in other elevated regions where some metallic mineral such as pyrite (fool's gold) may occur on the surface.

An accelerating high-latitude jet in Earth's core

NASA Astrophysics Data System (ADS)

Finlay, C. C.; Livermore, P. W.; Hollerbach, R.

2016-12-01

The structure of the core-generated magnetic field, and how it changes in time (its secular variation or SV), supplies an invaluable constraint on the dynamics of the outer core. At high latitude, previous studies have noted distinctive behaviour of secular change, in particular suggesting a polar vortex tied to the dynamics within the tangent cylinder region. Recent high-resolution observational models that include data from the Swarm satellites have refined the structure of observed SV, to a rapidly changing circular daisy-chain configuration centred on the north geographic pole, on or very close to the tangent cylinder itself. Motivated by theoretical considerations of the likely dynamical regime of the core, we demonstrate that this feature can be explained by a localised westwards cylindrical jet of 420 km width centred the tangent cylinder, whose amplitude appears to have increased in strength by a factor of three over the period 2000-2016 to about 40 km/yr. The current accelerating phase may be a short fragment of decadal fluctuations of the jet strength linked to both torsional wave activity and the rotation direction of the inner core.

A multiwavelength study of the Eridanus soft X-ray enhancement

NASA Technical Reports Server (NTRS)

Burrows, D. N.; Singh, K. P.; Nousek, J. A.; Garmire, G. P.; Good, J.

1993-01-01

We present soft X-ray, N(H), and IR maps of the Eridanus soft X-ray enhancement. Soft X-ray maps from the HEAO 1 A-2 LED experiment, processed with a maximum entropy method (MEM) algorithm, show that the enhancement consists of two distinct components: a large hook-shaped component and a small circular component at different temperatures. Both of these are located in 'holes' in the IR emission, and they correspond to N(H) features at very different velocities. The dust surrounding the X-ray enhancements appears to be associated with several high-latitude molecular clouds, which allow us to obtain a probable distance of about 130 pc to the near edge of the main enhancement. The total power emitted by the hot gas is then about 10 exp 35 to 10 exp 36 ergs/s. We consider alternative interpretations of these objects as adiabatic supernova remnants or as stellar wind bubbles and conclude that they are more likely to be stellar wind bubbles, possibly reheated by a SN explosion in the case of the main, hook-shaped object.

Pointillist structural color in Pollia fruit

PubMed Central

Vignolini, Silvia; Rudall, Paula J.; Rowland, Alice V.; Reed, Alison; Moyroud, Edwige; Faden, Robert B.; Baumberg, Jeremy J.; Glover, Beverley J.; Steiner, Ullrich

2012-01-01

Biological communication by means of structural color has existed for at least 500 million years. Structural color is commonly observed in the animal kingdom, but has been little studied in plants. We present a striking example of multilayer-based strong iridescent coloration in plants, in the fruit of Pollia condensata. The color is caused by Bragg reflection of helicoidally stacked cellulose microfibrils that form multilayers in the cell walls of the epicarp. We demonstrate that animals and plants have convergently evolved multilayer-based photonic structures to generate colors using entirely distinct materials. The bright blue coloration of this fruit is more intense than that of any previously described biological material. Uniquely in nature, the reflected color differs from cell to cell, as the layer thicknesses in the multilayer stack vary, giving the fruit a striking pixelated or pointillist appearance. Because the multilayers form with both helicoidicities, optical characterization reveals that the reflected light from every epidermal cell is polarized circularly either to the left or to the right, a feature that has never previously been observed in a single tissue. PMID:23019355

Hot spine loops and the nature of a late-phase solar flare

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sun, Xudong; Todd Hoeksema, J.; Liu, Yang

2013-12-01

The fan-spine magnetic topology is believed to be responsible for many curious features in solar explosive events. A spine field line links distinct flux domains, but direct observation of such a feature has been rare. Here we report a unique event observed by the Solar Dynamic Observatory where a set of hot coronal loops (over 10 MK) connected to a quasi-circular chromospheric ribbon at one end and a remote brightening at the other. Magnetic field extrapolation suggests that these loops are partly tracers of the evolving spine field line. Continuous slipping- and null-point-type reconnections were likely at work, energizing themore » loop plasma and transferring magnetic flux within and across the fan quasi-separatrix layer. We argue that the initial reconnection is of the 'breakout' type, which then transitioned to a more violent flare reconnection with an eruption from the fan dome. Significant magnetic field changes are expected and indeed ensued. This event also features an extreme-ultraviolet (EUV) late phase, i.e., a delayed secondary emission peak in warm EUV lines (about 2-7 MK). We show that this peak comes from the cooling of large post-reconnection loops beside and above the compact fan, a direct product of eruption in such topological settings. The long cooling time of the large arcades contributes to the long delay; additional heating may also be required. Our result demonstrates the critical nature of cross-scale magnetic coupling—topological change in a sub-system may lead to explosions on a much larger scale.« less

The roles of shared vs. distinctive conceptual features in lexical access

PubMed Central

Vieth, Harrison E.; McMahon, Katie L.; de Zubicaray, Greig I.

2014-01-01

Contemporary models of spoken word production assume conceptual feature sharing determines the speed with which objects are named in categorically-related contexts. However, statistical models of concept representation have also identified a role for feature distinctiveness, i.e., features that identify a single concept and serve to distinguish it quickly from other similar concepts. In three experiments we investigated whether distinctive features might explain reports of counter-intuitive semantic facilitation effects in the picture word interference (PWI) paradigm. In Experiment 1, categorically-related distractors matched in terms of semantic similarity ratings (e.g., zebra and pony) and manipulated with respect to feature distinctiveness (e.g., a zebra has stripes unlike other equine species) elicited interference effects of comparable magnitude. Experiments 2 and 3 investigated the role of feature distinctiveness with respect to reports of facilitated naming with part-whole distractor-target relations (e.g., a hump is a distinguishing part of a CAMEL, whereas knee is not, vs. an unrelated part such as plug). Related part distractors did not influence target picture naming latencies significantly when the part denoted by the related distractor was not visible in the target picture (whether distinctive or not; Experiment 2). When the part denoted by the related distractor was visible in the target picture, non-distinctive part distractors slowed target naming significantly at SOA of −150 ms (Experiment 3). Thus, our results show that semantic interference does occur for part-whole distractor-target relations in PWI, but only when distractors denote features shared with the target and other category exemplars. We discuss the implications of these results for some recently developed, novel accounts of lexical access in spoken word production. PMID:25278914

Improving the Inventory of Large Lunar Basins: Using LOLA Data to Test Previous Candidates and Search for New Ones

NASA Technical Reports Server (NTRS)

Frey, H. V.; Meyer, H. M.; Romine, G. C.

2012-01-01

Topography and crustal thickness data from LOLA altimetry were used to test the validity of 98 candidate large lunar basins derived from photogeologic and earlier topographic and crustal thickness data, and to search for possible new candidates. We eliminate 23 previous candidates but find good evidence for 20 new candidates. The number of basins greater than 300 km diameter on the Moon is almost certainly a factor 2 (maybe 3?) larger than the number of named features having basin-like topography. Unified Lunar Control Net 2005 data [1] and model crustal thickness data [2] were previously used to search for possible previously unrecognized large lunar impact basins [3,4]. An inventory of 98 candidate topographic basins greater than 300 km in diameter was found [5]. This includes 33 named features (only those having basin-like topography) out of the 45 listed by Wilhelms [6], 38 additional Quasi-Circular Depressions (QCDs) found in the ULCN2005 topography, and 27 Circular Thin Areas (CTAs) found in model crustal thickness data [2]. Most named features and additional QCDs have strong CTA signatures, but there may be a class of CTAs that are not easily recognized in the old and low resolution ULCN2005 topography. Lunar Orbiter Laser Altimeter (LOLA) data have recently become publically available. We used these data to (a) refine the center and ring diameters of known basins, (b) test the viability of the candidate basins previously found (as described above), and (c) search for additional candidate basins not revealed by the earlier lower resolution data. We used the LOLA topography directly but also a recent new model crustal thickness data that includes Kaguya gravity data [7]. We repeated a Topographic Expression (TE) and a Crustal Thickness Expression (CTE) scoring exercise originally done with the basins found in ULCN and earlier model crustal thickness data [5]. Each candidate was scored on a scale from 0 (no topographic basin or circular thin area signature) to 5 (strong circular low or strong circular thin area signature). These were combined into a total score used to rank the probability for each candidate basin. We used the same GRIDVIEW software to stretch, contour and profile the LOLA and new crustal thickness data as was done with the ULCN2005 and older model crustal thickness data.

A microwave applicator for uniform irradiation by circularly polarized waves in an anechoic chamber

NASA Astrophysics Data System (ADS)

Chiang, W. Y.; Wu, M. H.; Wu, K. L.; Lin, M. H.; Teng, H. H.; Tsai, Y. F.; Ko, C. C.; Yang, E. C.; Jiang, J. A.; Barnett, L. R.; Chu, K. R.

2014-08-01

Microwave applicators are widely employed for materials heating in scientific research and industrial applications, such as food processing, wood drying, ceramic sintering, chemical synthesis, waste treatment, and insect control. For the majority of microwave applicators, materials are heated in the standing waves of a resonant cavity, which can be highly efficient in energy consumption, but often lacks the field uniformity and controllability required for a scientific study. Here, we report a microwave applicator for rapid heating of small samples by highly uniform irradiation. It features an anechoic chamber, a 24-GHz microwave source, and a linear-to-circular polarization converter. With a rather low energy efficiency, such an applicator functions mainly as a research tool. This paper discusses the significance of its special features and describes the structure, in situ diagnostic tools, calculated and measured field patterns, and a preliminary heating test of the overall system.

A microwave applicator for uniform irradiation by circularly polarized waves in an anechoic chamber.

PubMed

Chiang, W Y; Wu, M H; Wu, K L; Lin, M H; Teng, H H; Tsai, Y F; Ko, C C; Yang, E C; Jiang, J A; Barnett, L R; Chu, K R

2014-08-01

Microwave applicators are widely employed for materials heating in scientific research and industrial applications, such as food processing, wood drying, ceramic sintering, chemical synthesis, waste treatment, and insect control. For the majority of microwave applicators, materials are heated in the standing waves of a resonant cavity, which can be highly efficient in energy consumption, but often lacks the field uniformity and controllability required for a scientific study. Here, we report a microwave applicator for rapid heating of small samples by highly uniform irradiation. It features an anechoic chamber, a 24-GHz microwave source, and a linear-to-circular polarization converter. With a rather low energy efficiency, such an applicator functions mainly as a research tool. This paper discusses the significance of its special features and describes the structure, in situ diagnostic tools, calculated and measured field patterns, and a preliminary heating test of the overall system.

The Making of "Who We Are," Now Showing at the NMAI Lelawi Theater

ERIC Educational Resources Information Center

Singer, Beverly R.

2005-01-01

"Who We Are" is among the exhibitions that premiered in September 2004 during the opening of the Smithsonian National Museum of American Indian in the U.S. capital. It is a multimedia-formatted film being shown in the distinctive circular Lelawi Theater located on the fourth floor in the museum. "Lelawi" is a Lenape (Delaware)…

Mesa in Aureum Chaos

NASA Technical Reports Server (NTRS)

2004-01-01

2 August 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a circular mesa and layered materials that are partially-exposed from beneath a thick, dark mantle in the Aureum Chaos region of Mars. The features are part of a much larger circular form (bigger than the image shown here) that marks the location of a crater that was filled with light-toned sedimentary rock, buried, and then later re-exposed when the upper crust of Mars broke apart in this region to form buttes and mesas of 'chaotic terrain.' The circular mesa in this image might also be the location of a formerly filled and buried crater. This image is located near 4.0oS, 26.9oW. It covers an area about 3 km (1.9 mi) across; sunlight illuminates the scene from the left/upper left.

The Advanced Light Source Elliptically Polarizing Undulator

NASA Astrophysics Data System (ADS)

Marks, Steve; Cortopassi, Christopher; Devries, Jan; Hoyer, Egon; Leinbach, Robert; Minamihara, Yoshi; Padmore, Howard; Pipersky, Paul; Plate, Dave; Schlueter, Ross; Young, Anthony

1997-05-01

An elliptically polarizing undulator for the Advanced Light Source has been designed and is currently under construction. The magnetic design is a four quadrant pure permanent magnet structure featuring moveable magnets to correct phase errors and on axis field integrals. The device is designed with a 5.0 cm period and will produce variably polarized light of any ellipticity, including pure circular and linear. The spectral range at 1.9 GeV for typical elliptical polarization with a degree of circular polarization greater than 0.8 will be from 100 eV to 1500 eV, using the third and fifth spectral harmonics. The device will be switchabe between left and right circular modes at a frequency of up to 0.1 Hz. The 1.95 m long overall length will allow two such devices in a single ALS straight sector.

Geophysical anomalies and quartz microstructures, Eastern Warburton Basin, North-east South Australia: Tectonic or impact shock metamorphic origin?

NASA Astrophysics Data System (ADS)

Glikson, Andrew Y.; Uysal, I. Tonguç; Fitz Gerald, John D.; Saygin, Erdinc

2013-03-01

The Eastern Warburton Basin, Northeast South Australia, features major geophysical anomalies, including a magnetic high of near-200 nT centred on a 25 km-wide magnetic low (< 100 nT), interpreted in terms of a magmatic body below 6 km depth. A distinct seismic tomographic low velocity anomaly may reflect its thick (9.5 km) sedimentary section, high temperatures and possible deep fracturing. Scanning electron microscope (SEM) analyses of granites resolves microbreccia veins consisting of micron-scale particles injected into resorbed quartz grains. Planar and sub-planar elements in quartz grains (Qz/PE) occur in granites, volcanics and sediments of the > 30,000 km-large Eastern Warburton Basin. The Qz/PE include multiple intersecting planar to curved sub-planar elements with relic lamellae less than 2 μm wide with spacing of 4-5 μm. Qz/PE are commonly re-deformed, displaying bent and wavy patterns accompanied with fluid inclusions. U-stage measurements of a total of 243 planar sets in 157 quartz grains indicate dominance of ∏{10-12}, ω{10-13} and subsidiary §{11-22}, {22-41}, m{10-11} and x{51-61} planes. Transmission Electron Microscopy (TEM) analysis displays relic narrow ≤ 1 μm-wide lamellae and relic non-sub grain boundaries where crystal segments maintain optical continuity. Extensive sericite alteration of feldspar suggests hydrothermal alteration to a depth of 500 m below the unconformity which overlies the Qz/PE-bearing Warburton Basin terrain. The data are discussed in terms of (A) Tectonic-metamorphic deformation and (B) impact shock metamorphism producing planar deformation features (Qz/PDF). Deformed Qz/PE are compared to re-deformed Qz/PDFs in the Sudbury, Vredefort, Manicouagan and Charlevoix impact structures. A 4-5 km uplift of the Big Lake Granite Suite during 298-295 Ma is consistent with missing of upper Ordovician to Devonian strata and possible impact rebound. The occurrence of circular seismic tomography anomalies below the east Warburton Basin, the Poolowana Basin and the Woodleigh impact structure signifies a potential diagnostic nature of circular tomographic anomalies.

Risk factors associated with delayed gastric emptying after subtotal gastrectomy with Billroth-I anastomosis using circular stapler for early gastric cancer patients

PubMed Central

Kim, Ki Han; Jung, Ghap Joong

2012-01-01

Purpose Gastric surgery may potentiate delayed gastric emptying. Billroth I gastroduodenostomy using a circular stapler is the most preferable reconstruction method. The purpose of this study is to analyze the risk factors associated with delayed gastric emptying after radical subtotal gastrectomy with Billroth I anastomosis using a stapler for early gastric cancer. Methods Three hundred and seventy-eight patients who underwent circular stapled Billroth I gastroduodenostomy after subtotal gastrectomy due to early gastric cancer were analyzed retrospectively. One hundred and eighty-two patients had Billroth I anastomosis using a 25 mm diameter circular stapler, and 196 patients had anastomosis with a 28 or 29 mm diameter circular stapler. Clinicopathological features and postoperative outcomes were evaluated and compared between the two groups. Delayed gastric emptying was diagnosed by symptoms and simple abdomen X-ray with or without upper gastrointestinal series or endoscopy. Results Postoperative delayed gastric emptying was found in 12 (3.2%) of the 378 patients. Among all the variables, distal margin and circular stapler diameter were significantly different between the cases with delayed gastric emptying and no delayed gastric emptying. There were statistically significant differences in sex, body mass index, comorbidity, complication, and operation type according to circular stapler diameter. In both univariate and multivariate logistic regression analyses, only the stapler diameter was found to be a significant factor affecting delayed gastric emptying (P = 0.040). Conclusion In this study, the circular stapler diameter was one of the most significant predictable factors of delayed gastric emptying for Billroth I gastroduodenostomy. The use of a 28 or 29 mm diameter circular stapler rather than a 25 mm diameter stapler in stapled gastroduodenostomy for early gastric cancer can reduce postoperative delayed gastric emptying associated with anastomosic stenosis or edema with relative safety. PMID:23166886

Nova Superposed on Yavine Corona

NASA Image and Video Library

1998-06-04

The view from NASA's Magellan spacecraft shows a 100-km-wide nova superposed on Yavine Corona. Coronae are roughly circular, volcanic features believed to form over hot upwellings of magma within the Venusian mantle. http://photojournal.jpl.nasa.gov/catalog/PIA00150

Signal polymorphism under a constant environment: the odd cross in a web decorating spider

NASA Astrophysics Data System (ADS)

Walter, André; Elgar, Mark A.

2016-12-01

The quality of many animal signals varies, perhaps through their use in different contexts or by representing an adaptive response to reduce the risk of exploitation. Spiders of the orb weaver genus Argiope add linear, cruciate or circular silk structures to their orb webs, creating inter- and intra-specific polymorphic visual signals. Different decoration patterns are frequently attributed to different signal effects, but this view is contradicted by commonly observed intraspecific variation in decorating behaviour. Adults of Argiope mascordi are bimodal web decorators, building two distinct patterns, circular and cruciate silk structures. We investigated the variation of patterns under controlled, invariant laboratory conditions. Circular decorations were most frequent, but individuals often switch to the other pattern. This variation neither increased nor decreased over time, suggesting that pattern variability is primarily intrinsic rather than an exclusive response to environmental changes. Accordingly, we discuss the evolutionary implications in the light of the conservation of a single signal function through maintaining the variation of its quality and the alternative view that silk decorations may not represent adaptive signals at all.

Molecules-in-molecules fragment-based method for the calculation of chiroptical spectra of large molecules: Vibrational circular dichroism and Raman optical activity spectra of alanine polypeptides.

PubMed

Jose, K V Jovan; Raghavachari, Krishnan

2016-12-01

The molecules-in-molecules (MIM) fragment-based method has recently been adapted to evaluate the chiroptical (vibrational circular dichroism [VCD] and Raman optical activity [ROA]) spectra of large molecules such as peptides. In the MIM-VCD and MIM-ROA methods, the relevant higher energy derivatives of the parent molecule are assembled from the corresponding derivatives of smaller fragment subsystems. In addition, the missing long-range interfragment interactions are accounted at a computationally less expensive level of theory (MIM2). In this work we employed the MIM-VCD and MIM-ROA fragment-based methods to explore the evolution of the chiroptical spectroscopic characteristics of 3 10 -helix, α-helix, β-hairpin, γ-turn, and β-extended conformers of gas phase polyalanine (chain length n = 6-14). The different conformers of polyalanine show distinctive features in the MIM chiroptical spectra and the associated spectral intensities increase with evolution of system size. For a better understanding the site-specific effects on the vibrational spectra, isotopic substitutions were also performed employing the MIM method. An increasing redshift with the number of isotopically labeled 13 C=O functional groups in the peptide molecule was seen. For larger polypeptides, we implemented the two-step-MIM model to circumvent the high computational expense associated with the evaluation of chiroptical spectra at a high level of theory using large basis sets. The chiroptical spectra of α-(alanine) 20 polypeptide obtained using the two-step-MIM model, including continuum solvation effects, show good agreement with the full calculations and experiment. This benchmark study suggests that the MIM-fragment approach can assist in predicting and interpreting chiroptical spectra of large polypeptides. © 2016 Wiley Periodicals, Inc.

Fourier transform vibrational circular dichroism of small pharmaceutical molecules

NASA Astrophysics Data System (ADS)

Long, Fujin; Freedman, Teresa B.; Nafie, Laurence A.

1998-06-01

Fourier transform vibrational circular dichroism (FT-VCD) spectra of the small pharmaceutical molecules propanolol, ibuprofen and naproxen have been measured in the hydrogen stretching and mid-infrared regions to obtain information on solution conformation and to identify markers for absolute configuration determination. Ab initio molecular orbital calculations of low energy conformations, vibrational frequencies and VCD intensities for fragments of the drugs were utilized in interpreting the spectra. Features characteristic of five conformers of propranolol were identified. The weak positive CH stretching VCD signal in ibuprofen and naproxen is characteristic of the S-configuration of the chiral center common to these two analgesics.

Polar POLICRYPS diffractive structures generate cylindrical vector beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alj, Domenico; Caputo, Roberto, E-mail: roberto.caputo@fis.unical.it; Umeton, Cesare

2015-11-16

Local shaping of the polarization state of a light beam is appealing for a number of applications. This can be achieved by employing devices containing birefringent materials. In this article, we present one such enables converting a uniformly circularly polarized beam into a cylindrical vector beam (CVB). This device has been fabricated by exploiting the POLICRYPS (POlymer-LIquid CRYstals-Polymer-Slices) photocuring technique. It is a liquid-crystal-based optical diffraction grating featuring polar symmetry of the director alignment. We have characterized the resulting CVB profile and polarization for the cases of left and right circularly polarized incoming beams.

Mirror-symmetry-breaking in poly[(9,9-di-n-octylfluorenyl- 2,7-diyl)-alt-biphenyl] (PF8P2) is susceptible to terpene chirality, achiral solvents, and mechanical stirring.

PubMed

Fujiki, Michiya; Kawagoe, Yoshifumi; Nakano, Yoko; Nakao, Ayako

2013-06-17

Solvent chirality transfer of (S)-/(R)-limonenes allows the instant generation of optically active PF8P2 aggregates with distinct circular dichroism (CD)/circularly polarized luminescence (CPL) amplitudes with a high quantum yield of 16-20%. The present paper also reports subtle mirror-symmetry-breaking effects in CD-/CPL-amplitude and sign, CD/UV-vis spectral wavelengths, and photodynamics of the aggregates, though the reasons for the anomaly are unsolved. However, these photophysical properties depend on (i) the chemical natures of chiral and achiral molecules when used in solvent quantity, (ii) clockwise and counterclockwise stirring operations, and (iii) the order of addition of limonene and methanol to the chloroform solution.

Fe/Rh (100) multilayer magnetism probed by x-ray magnetic circular dichroism

NASA Astrophysics Data System (ADS)

Tomaz, M. A.; Ingram, D. C.; Harp, G. R.; Lederman, D.; Mayo, E.; O'brien, W. L.

1997-09-01

We report the layer-averaged magnetic moments of both Fe and Rh in sputtered Fe/Rh (100) multilayer thin films as measured by x-ray magnetic circular dichroism. We observe two distinct regimes in these films. The first is characterized by Rh moments of at least 1μB, Fe moments enhanced as much as 30% above bulk, and a bct crystal structure. The second regime is distinguished by sharp declines of both Fe and Rh moments accompanied by a transition to an fct crystal lattice. The demarcation between the two regions is identified as the layer thickness for which both bct and fct phases first coexist, which we term the critical thickness tcrit. We attribute the change in magnetic behavior to the structural transformation.

On mass transport in porosity waves

NASA Astrophysics Data System (ADS)

Jordan, Jacob S.; Hesse, Marc A.; Rudge, John F.

2018-03-01

Porosity waves arise naturally from the equations describing fluid migration in ductile rocks. Here, we show that higher-dimensional porosity waves can transport mass and therefore preserve geochemical signatures, at least partially. Fluid focusing into these high porosity waves leads to recirculation in their center. This recirculating fluid is separated from the background flow field by a circular dividing streamline and transported with the phase velocity of the porosity wave. Unlike models for one-dimensional chromatography in geological porous media, tracer transport in higher-dimensional porosity waves does not produce chromatographic separations between relatively incompatible elements due to the circular flow pattern. This may allow melt that originated from the partial melting of fertile heterogeneities or fluid produced during metamorphism to retain distinct geochemical signatures as they rise buoyantly towards the surface.

Vibration due to non-circularity of a rotating ring having discrete radial supports - With application to thin-walled rotor/magnetic bearing systems

NASA Astrophysics Data System (ADS)

Fakkaew, Wichaphon; Cole, Matthew O. T.

2018-06-01

This paper investigates the vibration arising in a thin-walled cylindrical rotor subject to small non-circularity and coupled to discrete space-fixed radial bearing supports. A Fourier series description of rotor non-circularity is incorporated within a mathematical model for vibration of a rotating annulus. This model predicts the multi-harmonic excitation of the rotor wall due to bearing interactions. For each non-circularity harmonic there is a set of distinct critical speeds at which resonance can potentially arise due to flexural mode excitation within the rotor wall. It is shown that whether each potential resonance occurs depends on the multiplicity and symmetry of the bearing supports. Also, a sufficient number of evenly spaced identical supports will eliminate low order resonances. The considered problem is pertinent to the design and operation of thin-walled rotors with active magnetic bearing (AMB) supports, for which small clearances exist between the rotor and bearing and so vibration excitation must be limited to avoid contacts. With this motivation, the mathematical model is further developed for the case of a distributed array of electromagnetic actuators controlled by feedback of measured rotor wall displacements. A case study involving an experimental system with short cylindrical rotor and a single radial AMB support is presented. The results show that flexural mode resonance is largely avoided for the considered design topology. Moreover, numerical predictions based on measured non-circularity show good agreement with measurements of rotor wall vibration, thereby confirming the validity and utility of the theoretical model.

Rapid Processing of a Global Feature in the ON Visual Pathways of Behaving Monkeys.

PubMed

Huang, Jun; Yang, Yan; Zhou, Ke; Zhao, Xudong; Zhou, Quan; Zhu, Hong; Yang, Yingshan; Zhang, Chunming; Zhou, Yifeng; Zhou, Wu

2017-01-01

Visual objects are recognized by their features. Whereas, some features are based on simple components (i.e., local features, such as orientation of line segments), some features are based on the whole object (i.e., global features, such as an object having a hole in it). Over the past five decades, behavioral, physiological, anatomical, and computational studies have established a general model of vision, which starts from extracting local features in the lower visual pathways followed by a feature integration process that extracts global features in the higher visual pathways. This local-to-global model is successful in providing a unified account for a vast sets of perception experiments, but it fails to account for a set of experiments showing human visual systems' superior sensitivity to global features. Understanding the neural mechanisms underlying the "global-first" process will offer critical insights into new models of vision. The goal of the present study was to establish a non-human primate model of rapid processing of global features for elucidating the neural mechanisms underlying differential processing of global and local features. Monkeys were trained to make a saccade to a target in the black background, which was different from the distractors (white circle) in color (e.g., red circle target), local features (e.g., white square target), a global feature (e.g., white ring with a hole target) or their combinations (e.g., red square target). Contrary to the predictions of the prevailing local-to-global model, we found that (1) detecting a distinction or a change in the global feature was faster than detecting a distinction or a change in color or local features; (2) detecting a distinction in color was facilitated by a distinction in the global feature, but not in the local features; and (3) detecting the hole was interfered by the local features of the hole (e.g., white ring with a squared hole). These results suggest that monkey ON visual systems have a subsystem that is more sensitive to distinctions in the global feature than local features. They also provide the behavioral constraints for identifying the underlying neural substrates.

AM Herculis - Simultaneous X-ray, optical, and near-IR coverage

NASA Technical Reports Server (NTRS)

Szkody, P.; Tuohy, I. R.; Cordova, F. A.; Stockman, H. S.; Angel, J. R. P.; Wisniewski, W.

1980-01-01

A 6 hour X-ray pointing at AM Her using the HEAO 1 satellite is correlated with simultaneous broadband V and I photometry and visual circular polarimetry. The absence of correlations on either a flickering or an orbital time scale implies distinct regions for the visual and X-ray emission. Significant changes in the light curves are observed from one binary cycle to the next.

Review of the Functions of Archimedes’ Spiral Metallic Nanostructures

PubMed Central

Li, Zixiang; Zhang, Jingran; Guo, Kai; Shen, Fei; Zhou, Qingfeng; Zhou, Hongping

2017-01-01

Here, we have reviewed some typical plasmonic structures based on Archimedes’ spiral (AS) architectures, which can produce polarization-sensitive focusing phenomenon and generate plasmonic vortices (PVs) carrying controllable orbital angular momentum (OAM) because of the relation between the incident polarized states and the chiralities of the spiral structures. These features can be used to analyze different circular polarization states, which has been one of the rapidly developing researching topics in nanophotonics in recent years. Many investigations demonstrate that the multifunctional spiral-based plasmonic structures are excellent choices for chiral selection and generating the transmitted field with well-defined OAM. The circular polarization extinction ratio, as an evaluation criterion for the polarization selectivity of a designed structure, could be effectively improved by properly modulating the parameters of spiral structures. Such functional spiral plasmonic nanostructures are promising for applications in analyzing circular polarization light, full Stokes vector polarimetric sensors, near-field imaging, and so on. PMID:29165382

Role of Importance and Distinctiveness of Semantic Features in People with Aphasia: A Replication Study

ERIC Educational Resources Information Center

Mason-Baughman, Mary Beth; Wallace, Sarah E.

2014-01-01

Previous studies suggest that people with aphasia have incomplete lexical-semantic representations with decreased low-importance distinctive (LID) feature knowledge. In addition, decreased LID feature knowledge correlates with ability to discriminate among semantically related words. The current study seeks to replicate and extend previous…

Physical properties and dynamical relation of the circular depressions on comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Ip, W.-H.; Lai, I.-L.; Lee, J.-C.; Cheng, Y.-C.; Li, Y.; Lin, Z.-Y.; Vincent, J.-B.; Besse, S.; Sierks, H.; Barbieri, C.; Lamy, P. L.; Rodrigo, R.; Koschny, D.; Rickman, H.; Keller, H. U.; Agarwal, J.; A'Hearn, M. F.; Barucci, M. A.; Bertaux, J.-L.; Bertini, I.; Bodewits, D.; Boudreault, S.; Cremonese, G.; Da Deppo, V.; Davidsson, B.; Debei, S.; De Cecco, M.; El-Maarry, M. R.; Fornasier, S.; Fulle, M.; Groussin, O.; Gutiérrez, P. J.; Güttler, C.; Hviid, S. F.; Jorda, L.; Knollenberg, J.; Kovacs, G.; Kramm, J.-R.; Kührt, E.; Küppers, M.; La Forgia, F.; Lara, L. M.; Lazzarin, M.; López-Moreno, J. J.; Lowry, S.; Marchi, S.; Marzari, F.; Michalik, H.; Mottola, S.; Naletto, G.; Oklay, N.; Pajola, M.; Thomas, N.; Toth, E.; Tubiana, C.

2016-06-01

Aims: We aim to characterize the circular depressions of comet 67P/Churyumov-Gerasimenko and investigate whether such surface morphology of a comet nucleus is related to the cumulative sublimation effect since becoming a Jupiter family comet (JFC). Methods: The images from the Rosetta/OSIRIS science camera experiment are used to construct size frequency distributions of the circular depression structures on comet 67P and they are compared with those of the JFCs 81P/Wild 2, 9P/Tempel 1, and 103P/Hartley 2. The orbital evolutionary histories of these comets over the past 100 000 yr are analyzed statistically and compared with each other. Results: The global distribution of the circular depressions over the surface of 67P is charted and classified. Descriptions are given to the characteristics and cumulative size frequency distribution of the identified features. Orbital statistics of the JFCs visited by spacecraft are derived. Conclusions: The size frequency distribution of the circular depressions is found to have a similar power law distribution to those of 9P/Tempel 1 and 81P/Wild 2. This might imply that they could have been generated by the same process. Orbital integration calculation shows that the surface erosion histories of 81P/Wild 2, and 9P/Tempel 1 could be shorter than those of 67P, 103 P/Hartley 2 and 19P/Borrelly. From this point of view, the circular depressions could be dated back to the pre-JFC phase or the transneptunian phase of these comets. The north-south asymmetry in the distribution of the circular depressions could be associated with the heterogeneous structure of the nucleus of comet 67P and/or the solar insolation history.

Circular RNAs (circRNAs) in Health and Disease

PubMed Central

Haque, Shahnaz; Harries, Lorna W.

2017-01-01

Splicing events do not always produce a linear transcript. Circular RNAs (circRNAs) are a class of RNA that are emerging as key new members of the gene regulatory milieu, which are produced by back-splicing events within genes. In circRNA formation, rather than being spliced in a linear fashion, exons can be circularised by use of the 3′ acceptor splice site of an upstream exon, leading to the formation of a circular RNA species. circRNAs have been demonstrated across species and have the potential to present genetic information in new orientations distinct from their parent transcript. The importance of these RNA players in gene regulation and normal cellular homeostasis is now beginning to be recognised. They have several potential modes of action, from serving as sponges for micro RNAs and RNA binding proteins, to acting as transcriptional regulators. In accordance with an important role in the normal biology of the cell, perturbations of circRNA expression are now being reported in association with disease. Furthermore, the inherent stability of circRNAs conferred by their circular structure and exonuclease resistance, and their expression in blood and other peripheral tissues in association with endosomes and microvesicles, renders them excellent candidates as disease biomarkers. In this review, we explore the state of knowledge on this exciting class of transcripts in regulating gene expression and discuss their emerging role in health and disease. PMID:29182528

Distinctive Features of Japanese Education. NIER Occasional Paper 01/91.

ERIC Educational Resources Information Center

National Inst. for Educational Research, Tokyo (Japan).

For the past decade there has been a surge of international interest in Japanese education in the wake of its economic and technological successes. This paper discusses eight distinctive features of Japanese education, identifying their advantages and disadvantages and how they have been brought about. These eight features of Japanese schooling…

Modelling the circular polarisation of Earth-like exoplanets: constraints on detecting homochirality

NASA Astrophysics Data System (ADS)

Hogenboom, Michael; Stam, Daphne; Rossi, Loic; Snik, Frans

2016-04-01

The circular polarisation of light is a property of electromagnetic radiation from which extensive information can be extracted. It is oft-neglected due to its small signal relative to linear polarisation and the need for advanced instrumentation in measuring it. Additionally, numerical modelling is complex as the full Stokes vector must always be computed. Circular polarisation is commonly induced through the multiple scattering of light by aerosols te{hansen} and multiple reflections of light by rough surfaces te{circplanets}. Most interestingly, distinctive spectral circular polarimetric behaviour is exhibited by light reflected by organisms due to the homochiral molecular structure of all known organisms te{chiralbailey}. Especially fascinating is the unique circular polarimetric behaviour of light reflected by photosynthesising organisms at the absorption wavelength of the chlorophyll pigment te{circpolchar}. This presents the previously unexplored possibility of circular polarimetry as a method for identifying and characterising the presence of organisms, a method which could be applied in the hunt for extraterrestrial life. To date, few telescopes exist that measure circular polarisation and none that have been deployed in space. Observations of the circular polarisation reflected by other planets in the solar system have been made with ground-based telescopes, with significant results te{circplanets}. However, none of these observations have been made at the phase angles at which exoplanets will be observed. Also, none have been made of the Earth, which is the logical starting point for the study of biologically induced circular polarisation signals. This introduces the need for numerical modelling to determine the extent to which circular polarisation is present in light reflected by exoplanets or the Earth. In this study, we model the multiple scattering and reflection of light using the doubling-adding method te{dehaan}. We will present circular polarisation signals for both spatially resolved and spatially unresolved planets, using various atmospheric and surface properties and across a range of phase angles. As a test, the calculated degree of circular polarisation resulting from the multiple scattering of light in an atmosphere with varying properties was compared with results presented by Kawata te{circatmos} and was found to be in agreement. Initial modelling of the atmospheric scattering of light by a planetary disk has shown a presence of degree of circular polarisation in the order of 10-4. This represents a static case with one cloudy hemisphere, one cloudless hemisphere and a Lambertian surface. Results containing varied patchy cloud patterns shall also be presented in a bid to reflect the random nature of planetary cloud cover. We will also present the calculated degree of circular polarisation of planets with various cloud coverage and a circularly polarising surface in order to discover the influence of organisms on the numerical results. {1} {hansen} J. E. {Hansen} and L. D. {Travis}. {Light scattering in planetary atmospheres}. {Space Science Reviews}, 16:527-610, October 1974. {circplanets} J. C. {Kemp} and R. D. {Wolstencroft}. {Circular Polarization: Jupiter and Other Planets}. {Nature}, 232:165-168, July 1971. {chiralbailey} J. {Bailey}. {Circular Polarization and the Origin of Biomolecular Homochirality}. In G. {Lemarchand} and K. {Meech}, editors, {Bioastronomy 99}, volume 213 of {Astronomical Society of the Pacific Conference Series}, 2000. {circpolchar} L. {Nagdimunov}, L. {Kolokolova}, and D. {Mackowski}. {Characterization and remote sensing of biological particles using circular polarization}. {Journal of Quantitative Spectroscopy and Radiative Transfer}, 131:59-65, December 2013. dehaan} J. F. {de Haan}, P. B. {Bosma}, and J. W. {Hovenier}. {The adding method for multiple scattering calculations of polarized light}. {Astronomy and Astrophysics}, 183:371-391, September 1987. {circatmos} Y. {Kawata}. {Circular polarization of sunlight reflected by planetary atmospheres}. {Icarus}, 33:217-232, January 1978.

Chiral-selective nonlinear optical generation and emission control with plasmonic metamaterials (Conference Presentation)

NASA Astrophysics Data System (ADS)

Cai, Wenshan

2016-09-01

Metamaterials can be designed to exhibit extraordinarily strong chiral responses. Here we present a chiral metamaterial that produces both distinguishable linear and nonlinear features in the visible to near-infrared range. In additional to the gigantic chiral effects in the linear regime, the metamaterial demonstrates a pronounced contrast between second harmonic responses from the two circular polarizations. Linear and nonlinear images probed with circularly polarized lights show strongly defined contrast. Moreover, the chiral centers of the nanometallic structures with enhanced hotspots can be purposely opened for direct access, where emitters occupying the light-confining regions produce chiral-selective enhancement of two-photon luminescence.

The multi-mode polarization modulation spectrometer: part 1: simultaneous detection of absorption, turbidity, and optical activity.

PubMed

Arvinte, Tudor; Bui, Tam T T; Dahab, Ali A; Demeule, Barthélemy; Drake, Alex F; Elhag, Dhia; King, Peter

2004-09-01

Circular dichroism (CD) is an important spectroscopic technique for monitoring chirality and biological macromolecule conformation. However, during a CD measurement, absorbance, light scattering/turbidity, and fluorescence can also be detected. The simultaneous measurement of these different spectral features for a single sample is the basis of a multi-mode optical spectrometer. This allows time-efficient gathering of complementary information and provides a scheme to ensure that CD measurements are reliable. Aspects of circular polarization differential light scattering, pH, and temperature variation of a protein (antibody) solution are described. A procedure to help ensure that CD measurements are reliable is described.

Detecting circular RNAs: bioinformatic and experimental challenges

PubMed Central

Szabo, Linda; Salzman, Julia

2017-01-01

The pervasive expression of circular RNAs (circRNAs) is a recently discovered feature of gene expression in highly diverged eukaryotes. Numerous algorithms that are used to detect genome-wide circRNA expression from RNA sequencing (RNA-seq) data have been developed in the past few years, but there is little overlap in their predictions and no clear gold-standard method to assess the accuracy of these algorithms. We review sources of experimental and bioinformatic biases that complicate the accurate discovery of circRNAs and discuss statistical approaches to address these biases. We conclude with a discussion of the current experimental progress on the topic. PMID:27739534

Structural Concepts Study of Non-circular Fuselage Configurations

NASA Technical Reports Server (NTRS)

Mukhopadhyay, Vivel

1996-01-01

A preliminary study of structural concepts for noncircular fuselage configurations is presented. For an unconventional flying-wing type aircraft, in which the fuselage is inside the wing, multiple fuselage bays with non-circular sections need to be considered. In a conventional circular fuselage section, internal pressure is carried efficiently by a thin skin via hoop tension. If the section is non-circular, internal pressure loads also induce large bending stresses. The structure must also withstand additional bending and compression loads from aerodynamic and gravitational forces. Flat and vaulted shell structural configurations for such an unconventional, non-circular pressurized fuselage of a large flying-wing were studied. A deep honeycomb sandwich-shell and a ribbed double-wall shell construction were considered. Combinations of these structural concepts were analyzed using both analytical and simple finite element models of isolated sections for a comparative conceptual study. Weight, stress, and deflection results were compared to identify a suitable configuration for detailed analyses. The flat sandwich-shell concept was found preferable to the vaulted shell concept due to its superior buckling stiffness. Vaulted double-skin ribbed shell configurations were found to be superior due to their weight savings, load diffusion, and fail-safe features. The vaulted double-skin ribbed shell structure concept was also analyzed for an integrated wing-fuselage finite element model. Additional problem areas such as wing-fuselage junction and pressure-bearing spar were identified.

Chirality sensing with stereodynamic copper(I) complexes.

PubMed

De Los Santos, Zeus A; Legaux, Nicholas M; Wolf, Christian

2017-11-01

Three Cu(I) complexes derived from stereodynamic diphosphine ligands were synthesized and used for chirality sensing. The coordination of diamines and amino acids to these complexes generates distinct circular dichroism signals. The chiroptical sensor response allows determination of the absolute configuration and the enantiomeric excess of the analyte at low concentrations. This method is operationally simple, fast, and attractive for high-throughput sensing applications. © 2017 Wiley Periodicals, Inc.

Distinctiveness of management in a university psychiatric hospital as a public health institution.

PubMed

Koncina, Miroslav

2008-06-01

The distinctiveness of management of a university psychiatric hospital which has the status of a public health institution is manifested in the following ways: * Distinctive features and characteristics of managing service provider organizations compared to those whose operational results involve tangible products; * Distinctive features of management which originate from its role as a regional hospital and a tertiary research and educational institution in the field of psychiatry, with special importance for the Republic of Slovenia as a whole; * Distinctive features of management that are defined by the social and legal framework of operation of public health institutions and their special social mission. This paper therefore discusses the specific theoretical and practical findings regarding management of service provider organizations from the viewpoint of their social mission and significance, as well as their legal organization, internal structure and values.

Iron-absorption band analysis for the discrimination of iron-rich zones

NASA Technical Reports Server (NTRS)

Rowan, L. C. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Study has concentrated on the two primary aspects of the project, structural analysis through evaluation of lineaments and circular features and spectral analyses through digital computer-processing techniques. Several previously unrecognized lineaments are mapped which may be the surface manifestations of major fault or fracture zones. Two of these, the Walker Lane and the Midas Trench lineament system, transect the predominantly NNE-NNW-trending moutain ranges for more than 500 km. Correlation of major lineaments with productive mining districts implies a genetic relationship, the 50 circular or elliptical features delineated suggest a related role for Tertiary volcanism. Color-ratio composites have been used to identify limonitic zones and to discriminate mafic and felsic rock by combing diazo color transparencies of three different ratios. EROS Data Center scene identification number for color composite in this report is ER 1 CC 500. Refinement of enhancement procedures for the ratio images is progressing. Fieldwork in coordination with both spectral and structural analyses is underway.

Universal ripper miner

DOEpatents

Morrell, Roger J.; Larson, David A.

1991-01-01

A universal ripper miner used to cut, collect and transfer material from an underground mine working face includes a cutter head that is vertically movable in an arcuate cutting cycle by means of drive members, such as hydraulically actuated pistons. The cutter head may support a circular cutter bit having a circular cutting edge that may be indexed to incrementally expose a fresh cutting edge. An automatic indexing system is disclosed wherein indexing occurs by means of a worm gear and indexing lever mechanism. The invention also contemplates a bi-directional bit holder enabling cutting to occur in both the upstroke and the downstroke cutting cycle. Another feature of the invention discloses multiple bits arranged in an in-line, radially staggered pattern, or a side-by-side pattern to increase the mining capacity in each cutting cycle. An on-board resharpening system is also disclosed for resharpening the cutting edge at the end of cutting stroke position. The aforementioned improvement features may be used either singly, or in any proposed combination with each other.

Exhuming Crater in Northeast Arabia

NASA Technical Reports Server (NTRS)

2003-01-01

MGS MOC Release No. MOC2-563, 3 December 2003

The upper crust of Mars is layered, and interbedded with these layers are old, filled and buried meteor impact craters. In a few places on Mars, such as Arabia Terra, erosion has re-exposed some of the filled and buried craters. This October 2003 Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows an example. The larger circular feature was once a meteor crater. It was filled with sediment, then buried beneath younger rocks. The smaller circular feature is a younger impact crater that formed in the surface above the rocks that buried the large crater. Later, erosion removed all of the material that covered the larger, buried crater, except in the location of the small crater. This pair of martian landforms is located near 17.6oN, 312.8oW. The image covers an area 3 km (1.9 mi) wide and is illuminated from the lower left.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Jing; Key Laboratory of Low Dimensional Quantum Structures and Quantum Control of Ministry of Education, Hunan Normal University, Changsha, Hunan 410081; Yu, Hongwei, E-mail: hwyu@hunnu.edu.cn

We study the spontaneous excitation of a detector (modeled by a two-level atom) in circular motion coupled nonlinearly to vacuum massless Rarita–Schwinger fields in the ultrarelativistic limit and demonstrate that the spontaneous excitation occurs for ground-state atoms in circular motion in vacuum but the excitation rate is not of a pure thermal form as that of the atoms in linear uniform acceleration. An interesting feature is that terms of odd powers in acceleration appear in the excitation rate whereas in the linear acceleration case there are only terms of even powers present. On the other hand, what makes the presentmore » case unique in comparison to the atom’s coupling to other fields that are previously studied is the appearance of the terms proportional to the seventh and ninth powers of acceleration in the mean rate of change of atomic energy which are absent in the scalar, electromagnetic and Dirac field cases. -- Highlights: •Circular Unruh effect for detector coupled to Rarita–Schwinger field. •Nonlinear coupling between the detector and the fields. •Detector in circular motion does not feel pure thermal bath. •Excitation rate contains terms of odd powers in acceleration.« less

A robust recognition and accurate locating method for circular coded diagonal target

NASA Astrophysics Data System (ADS)

Bao, Yunna; Shang, Yang; Sun, Xiaoliang; Zhou, Jiexin

2017-10-01

As a category of special control points which can be automatically identified, artificial coded targets have been widely developed in the field of computer vision, photogrammetry, augmented reality, etc. In this paper, a new circular coded target designed by RockeTech technology Corp. Ltd is analyzed and studied, which is called circular coded diagonal target (CCDT). A novel detection and recognition method with good robustness is proposed in the paper, and implemented on Visual Studio. In this algorithm, firstly, the ellipse features of the center circle are used for rough positioning. Then, according to the characteristics of the center diagonal target, a circular frequency filter is designed to choose the correct center circle and eliminates non-target noise. The precise positioning of the coded target is done by the correlation coefficient fitting extreme value method. Finally, the coded target recognition is achieved by decoding the binary sequence in the outer ring of the extracted target. To test the proposed algorithm, this paper has carried out simulation experiments and real experiments. The results show that the CCDT recognition and accurate locating method proposed in this paper can robustly recognize and accurately locate the targets in complex and noisy background.

Feature Biases in Early Word Learning: Network Distinctiveness Predicts Age of Acquisition

ERIC Educational Resources Information Center

Engelthaler, Tomas; Hills, Thomas T.

2017-01-01

Do properties of a word's features influence the order of its acquisition in early word learning? Combining the principles of mutual exclusivity and shape bias, the present work takes a network analysis approach to understanding how feature distinctiveness predicts the order of early word learning. Distance networks were built from nouns with edge…

Distinctive Features Hold a Privileged Status in the Computation of Word Meaning: Implications for Theories of Semantic Memory

ERIC Educational Resources Information Center

Cree, George S.; McNorgan, Chris; McRae, Ken

2006-01-01

The authors present data from 2 feature verification experiments designed to determine whether distinctive features have a privileged status in the computation of word meaning. They use an attractor-based connectionist model of semantic memory to derive predictions for the experiments. Contrary to central predictions of the conceptual structure…

Effect of Distinctive Feature Training on Paired-Associate Learning

ERIC Educational Resources Information Center

Samuels, S. Jay

1973-01-01

Purpose of this study was to test the hypothesis that training the student to note the distinctive features of a stimulus during perceptual learning facilities the hook-up phase in a paired-associate task. (Author)

SEAFLOOR MANIFESTATIONS OF GAS VENTING AND NEAR SEAFLOOR GAS HYDRATE OCCURRENCES

NASA Astrophysics Data System (ADS)

Paull, C. K.; Ussler, W.; Caress, D. W.; Thomas, H.; Lundsten, E.; Riedel, M.; Lapham, L.

2009-12-01

High-resolution multibeam bathymetry and chirp seismic profiles collected with an AUV complimented by ROV observations and sampling reveal the fine scale geomorphology and seafloor structures associated with gas venting and/or near subsurface gas hydrate accumulations along the Pacific North American continental margin. Sites from Santa Monica Basin, northern and southern Hydrate Ridge, Barkley Canyon, Bullseye Vent and three previously unexplored vent sites near Bullseye Vent have been recently investigated. The new AUV data allow the identification of features and seafloor textures that were previously undetected and reveal the impact of gas venting, gas hydrate development and related phenomena on the seafloor morphology. Distinct geomorphic characteristics are interpreted to represent different stages in the development and evolution of the seafloor in these areas. The more mature features include distinct (>10 m high) elevated features (e.g., Santa Monica Mounds and the Hydrate Ridge Pinnacle), widespread areas where methane-derived carbonates are exposed on the surrounding seafloor (e.g., both Hydrate Ridge sites, and an unnamed ridge north of Bullseye Vent), circular seafloor craters with diameters of 3 to 50 m that appear to be associated with missing sections of the original seafloor (e.g., Bullseye Vent, northern Hydrate Ridge, and an unnamed ridge north of Bullseye Vent). Smaller mound-like features (<10 m in diameter and 1-3 m higher than the surrounding seafloor occur at Barkley Canyon and a newly explored vent system called Spinnaker Vent 6 km NW of Bullseye vent. Solid lens of gas hydrate are occasionally exposed along fractures on the sides of these mounds and suggest that these are push-up features associated with gas hydrate growth within the near seafloor sediments. The existence of both extensive methane-derived carbonates and chemosynthetic biological communities characterized by Vesicomya clams and Lamellibrachia tubeworms (which are slow growing) indicate that methane venting has occurred for protracted periods of time at these sites. However, the youngest appearing features occur in a gulch ~1 km NE of Bullseye Vent. They are associated with more-subtle (2-3 m in diameter and ~0.5 m high) seafloor mounds, with their crests crossed with small cracks lined with white bacterial mats, lack exposed methane-derived carbonates, Vesicomya clams or Lamellibrachia tubeworms. ROV-collected vibracores (<1.5 cm long) obtained from these subtle mounds characteristically encountered a hard layer at 30-60 cm sub-bottom. Where this layer was penetrated, methane bubbles would spontaneously gush out the hole and continue to flow out for more than an hour. These observations suggest that these small mounds are young features which have considerable volumes of over-pressured gas trapped near the seafloor. Together these observations reveal the integrated effect that gas and/or gas hydrate occurrences can have on the seafloor. The existence of apparently over-pressured gas within ~1 m of the seafloor has intriguing implications as to the geo-hazard potential of such sites.

Invariant object recognition based on the generalized discrete radon transform

NASA Astrophysics Data System (ADS)

Easley, Glenn R.; Colonna, Flavia

2004-04-01

We introduce a method for classifying objects based on special cases of the generalized discrete Radon transform. We adjust the transform and the corresponding ridgelet transform by means of circular shifting and a singular value decomposition (SVD) to obtain a translation, rotation and scaling invariant set of feature vectors. We then use a back-propagation neural network to classify the input feature vectors. We conclude with experimental results and compare these with other invariant recognition methods.

Martian Fingerprints

NASA Technical Reports Server (NTRS)

2005-01-01

9 April 2005 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows patterned ground on the martian northern plains. The circular features are buried meteor impact craters; the small dark dots associated with them are boulders. The dark feature at left center is a wind streak.

Location near: 75.1oN, 303.0oW Image width: 3 km (1.9 mi) Illumination from: lower left Season: Northern Summer

Replicating distinctive facial features in lineups: identification performance in young versus older adults.

PubMed

Badham, Stephen P; Wade, Kimberley A; Watts, Hannah J E; Woods, Natalie G; Maylor, Elizabeth A

2013-04-01

Criminal suspects with distinctive facial features, such as tattoos or bruising, may stand out in a police lineup. To prevent suspects from being unfairly identified on the basis of their distinctive feature, the police often manipulate lineup images to ensure that all of the members appear similar. Recent research shows that replicating a distinctive feature across lineup members enhances eyewitness identification performance, relative to removing that feature on the target. In line with this finding, the present study demonstrated that with young adults (n = 60; mean age = 20), replication resulted in more target identifications than did removal in target-present lineups and that replication did not impair performance, relative to removal, in target-absent lineups. Older adults (n = 90; mean age = 74) performed significantly worse than young adults, identifying fewer targets and more foils; moreover, older adults showed a minimal benefit from replication over removal. This pattern is consistent with the associative deficit hypothesis of aging, such that older adults form weaker links between faces and their distinctive features. Although replication did not produce much benefit over removal for older adults, it was not detrimental to their performance. Therefore, the results suggest that replication may not be as beneficial to older adults as it is to young adults and demonstrate a new practical implication of age-related associative deficits in memory.

GenomeVx: simple web-based creation of editable circular chromosome maps.

PubMed

Conant, Gavin C; Wolfe, Kenneth H

2008-03-15

We describe GenomeVx, a web-based tool for making editable, publication-quality, maps of mitochondrial and chloroplast genomes and of large plasmids. These maps show the location of genes and chromosomal features as well as a position scale. The program takes as input either raw feature positions or GenBank records. In the latter case, features are automatically extracted and colored, an example of which is given. Output is in the Adobe Portable Document Format (PDF) and can be edited by programs such as Adobe Illustrator. GenomeVx is available at http://wolfe.gen.tcd.ie/GenomeVx

Perception of initial obstruent voicing is influenced by gestural organization

PubMed Central

Best, Catherine T.; Hallé, Pierre A.

2009-01-01

Cross-language differences in phonetic settings for phonological contrasts of stop voicing have posed a challenge for attempts to relate specific phonological features to specific phonetic details. We probe the phonetic-phonological relationship for voicing contrasts more broadly, analyzing in particular their relevance to nonnative speech perception, from two theoretical perspectives: feature geometry and articulatory phonology. Because these perspectives differ in assumptions about temporal/phasing relationships among features/gestures within syllable onsets, we undertook a cross-language investigation on perception of obstruent (stop, fricative) voicing contrasts in three nonnative onsets that use a common set of features/gestures but with differing time-coupling. Listeners of English and French, which differ in their phonetic settings for word-initial stop voicing distinctions, were tested on perception of three onset types, all nonnative to both English and French, that differ in how initial obstruent voicing is coordinated with a lateral feature/gesture and additional obstruent features/gestures. The targets, listed from least complex to most complex onsets, were: a lateral fricative voicing distinction (Zulu /ɬ/-ɮ/), a laterally-released affricate voicing distinction (Tlingit /tɬ/-/dɮ/), and a coronal stop voicing distinction in stop+/l/ clusters (Hebrew /tl/-/dl/). English and French listeners' performance reflected the differences in their native languages' stop voicing distinctions, compatible with prior perceptual studies on singleton consonant onsets. However, both groups' abilities to perceive voicing as a separable parameter also varied systematically with the structure of the target onsets, supporting the notion that the gestural organization of syllable onsets systematically affects perception of initial voicing distinctions. PMID:20228878

Secondary Crater-Initiated Debris Flow on the Moon

NASA Technical Reports Server (NTRS)

Martin-Wells, K. S.; Campbell, D. B.; Campbell, B. A.; Carter, L. M.; Fox, Q.

2016-01-01

In recent work, radar circular polarization echo properties have been used to identify "secondary" craters without distinctive secondary morphologies. Because of the potential for this method to improve our knowledge of secondary crater population-in particular the effect of secondary populations on crater- derived ages based on small craters-it is important to understand the origin of radar polarization signatures associated with secondary impacts. In this paper, we utilize Lunar Reconnaissance Orbiter Camera photographs to examine the geomorphology of secondary craters with radar circular polarization ratio enhancements. Our investigation reveals evidence of dry debris flow with an impact melt component at such secondary craters. We hypothesize that these debris flows were initiated by the secondary impacts themselves, and that they have entrained blocky material ejected from the secondaries. By transporting this blocky material downrange, we propose that these debris flows (rather than solely ballistic emplacement) are responsible for the tail-like geometries of enhanced radar circular polarization ratio associated with the secondary craters investigated in this work. Evidence of debris flow was observed at both clustered and isolated secondary craters, suggesting that such flow may be a widespread occurrence, with important implications for the mixing of primary and local material in crater rays.

Monolayer Transition Metal Dichalcogenides as Light Sources.

PubMed

Pu, Jiang; Takenobu, Taishi

2018-06-13

Reducing the dimensions of materials is one of the key approaches to discovering novel optical phenomena. The recent emergence of 2D transition metal dichalcogenides (TMDCs) has provided a promising platform for exploring new optoelectronic device applications, with their tunable electronic properties, structural controllability, and unique spin valley-coupled systems. This progress report provides an overview of recent advances in TMDC-based light-emitting devices discussed from several aspects in terms of device concepts, material designs, device fabrication, and their diverse functionalities. First, the advantages of TMDCs used in light-emitting devices and their possible functionalities are presented. Second, conventional approaches for fabricating TMDC light-emitting devices are emphasized, followed by introducing a newly established, versatile method for generating light emission in TMDCs. Third, current growing technologies for heterostructure fabrication, in which distinct TMDCs are vertically stacked or laterally stitched, are explained as a possible means for designing high-performance light-emitting devices. Finally, utilizing the topological features of TMDCs, the challenges for controlling circularly polarized light emission and its device applications are discussed from both theoretical and experimental points of view. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Iron-absorption band analysis for the discrimination of iron-rich zones

NASA Technical Reports Server (NTRS)

Rowan, L. C. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Lineament analysis of the area was initiated on individual images and then expanded areally by the use of mosaics at the 1:1,000,000 scale. Principal trends are NE, NW, NNE-NNW, and ENE. Several previously unrecognized lineaments are mapped which may be the surface manifestations of major fault or fracture zones. Three lineaments are especially noteworthy. Two of these, the Walker Lane and the Midas Trench lineament system, transect the prediominantly NNE-NNW trending mountain ranges for more than 500 km. A third major lineament, formed by the alinement of several topographic escarpments 10-20 km long, is orthogonal to the Midas Trench lineament. This lineament is marked by a distinct positive magnetic anomaly for approximately 200 km. Further visual analysis of ERTS-1 images has resulted in the delineation of 50 circular or elliptical features which are presumed to be volcanic or intrusive centers. A comparison with the 78 Tertiary volcanic centers mapped in the study area in 1970 indicates some good agreement between the proposed and known volcanic centers. The coincidence of some major lineaments and productive ore bodies implies a genetic relationship.

Performance-based robotic assistance during rhythmic arm exercises.

PubMed

Leconte, Patricia; Ronsse, Renaud

2016-09-13

Rhythmic and discrete upper-limb movements are two fundamental motor primitives controlled by different neural pathways, at least partially. After stroke, both primitives can be impaired. Both conventional and robot-assisted therapies mainly train discrete functional movements like reaching and grasping. However, if the movements form two distinct neural and functional primitives, both should be trained to recover the complete motor repertoire. Recent studies show that rhythmic movements tend to be less impaired than discrete ones, so combining both movement types in therapy could support the execution of movements with a higher degree of impairment by movements that are performed more stably. A new performance-based assistance method was developed to train rhythmic movements with a rehabilitation robot. The algorithm uses the assist-as-needed paradigm by independently assessing and assisting movement features of smoothness, velocity, and amplitude. The method relies on different building blocks: (i) an adaptive oscillator captures the main movement harmonic in state variables, (ii) custom metrics measure the movement performance regarding the three features, and (iii) adaptive forces assist the patient. The patient is encouraged to improve performance regarding these three features with assistance forces computed in parallel to each other. The method was tested with simulated jerky signals and a pilot experiment with two stroke patients, who were instructed to make circular movements with an end-effector robot with assistance during half of the trials. Simulation data reveal sensitivity of the metrics for assessing the features while limiting interference between them. The assistance's effectiveness with stroke patients is established since it (i) adapts to the patient's real-time performance, (ii) improves patient motor performance, and (iii) does not lead the patient to slack. The smoothness assistance was by far the most used by both patients, while it provided no active mechanical work to the patient on average. Our performance-based assistance method for training rhythmic movements is a viable candidate to complement robot-assisted upper-limb therapies for training a larger motor repertoire.

For Students: A Model Courtoom

ERIC Educational Resources Information Center

Morisseau, James J.

1973-01-01

Describes a model courtroom in which law school students at the University of the Pacific in Sacramento, California, can conduct practice trials. The courtroom design is circular and new features include an extensive security system, videotaping equipment, a press room, a technicians room, and an isolation room. (Author/DN)

RSO Characterization with Photometric Data Using Machine Learning

DTIC Science & Technology

2015-10-18

chose to simulate the signatures of three object types: A communication satellite, based on the Galaxy 15 architecture; a cube satellite, and a...communication satellite, modeled after the Galaxy 15. One case features a cubic central body, and the other a right-circular cylinder central body

Visible-Frequency Metasurface for Structuring and Spatially Multiplexing Optical Vortices.

PubMed

Mehmood, M Q; Mei, Shengtao; Hussain, Sajid; Huang, Kun; Siew, S Y; Zhang, Lei; Zhang, Tianhang; Ling, Xiaohui; Liu, Hong; Teng, Jinghua; Danner, Aaron; Zhang, Shuang; Qiu, Cheng-Wei

2016-04-06

A multifocus optical vortex metalens, with enhanced signal-to-noise ratio, is presented, which focuses three longitudinal vortices with distinct topological charges at different focal planes. The design largely extends the flexibility of tuning the number of vortices and their focal positions for circularly polarized light in a compact device, which provides the convenience for the nanomanipulation of optical vortices. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Chiral Anomalous Dispersion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sadofyev, Andrey; Sen, Srimoyee

The linearized Einstein equation describing graviton propagation through a chiral medium appears to be helicity dependent. We analyze features of the corresponding spectrum in a collision-less regime above a flat background. In the long wave-length limit, circularly polarized metric perturbations travel with a helicity dependent group velocity that can turn negative giving rise to a new type of an anomalous dispersion. We further show that this chiral anomalous dispersion is a general feature of polarized modes propagating through chiral plasmas extending our result to the electromagnetic sector.

A generalized geologic map of Mars.

NASA Technical Reports Server (NTRS)

Carr, M. H.; Masursky, H.; Saunders, R. S.

1973-01-01

A geologic map of Mars has been constructed largely on the basis of photographic evidence. Four classes of units are recognized: (1) primitive cratered terrain, (2) sparsely cratered volcanic eolian plains, (3) circular radially symmetric volcanic constructs such as shield volcanoes, domes, and craters, and (4) tectonic erosional units such as chaotic and channel deposits. Grabens are the main structural features; compressional and strike slip features are almost completely absent. Most grabens are part of a set radial to the main volcanic area, Tharsis.

Chiral Anomalous Dispersion

DOE PAGES

Sadofyev, Andrey; Sen, Srimoyee

2018-02-16

The linearized Einstein equation describing graviton propagation through a chiral medium appears to be helicity dependent. We analyze features of the corresponding spectrum in a collision-less regime above a flat background. In the long wave-length limit, circularly polarized metric perturbations travel with a helicity dependent group velocity that can turn negative giving rise to a new type of an anomalous dispersion. We further show that this chiral anomalous dispersion is a general feature of polarized modes propagating through chiral plasmas extending our result to the electromagnetic sector.

Arecibo radar imagery of Mars: The major volcanic provinces

NASA Astrophysics Data System (ADS)

Harmon, John K.; Nolan, Michael C.; Husmann, Diana I.; Campbell, Bruce A.

2012-08-01

We present Earth-based radar images of Mars obtained with the upgraded Arecibo S-band (λ = 12.6 cm) radar during the 2005-2012 oppositions. The imaging was done using the same long-code delay-Doppler technique as for the earlier (pre-upgrade) imaging but at a much higher resolution (˜3 km) and, for some regions, a more favorable sub-Earth latitude. This has enabled us to make a more detailed and complete mapping of depolarized radar reflectivity (a proxy for small-scale surface roughness) over the major volcanic provinces of Tharsis, Elysium, and Amazonis. We find that vast portions of these regions are covered by radar-bright lava flows exhibiting circular polarization ratios close to unity, a characteristic that is uncommon for terrestrial lavas and that is a likely indicator of multiple scattering from extremely blocky or otherwise highly disrupted flow surfaces. All of the major volcanoes have radar-bright features on their shields, although the brightness distribution on Olympus Mons is very patchy and the summit plateau of Pavonis Mons is entirely radar-dark. The older minor shields (paterae and tholi) are largely or entirely radar-dark, which is consistent with mantling by dust or pyroclastic material. Other prominent radar-dark features include: the "fan-shaped deposits", possibly glacial, associated with the three major Tharsis Montes shields; various units of the Medusae Fossae Formation; a region south and west of Biblis Patera where "Stealth" deposits appear to obscure Tharsis flows; and a number of "dark-halo craters" with radar-absorbing ejecta blankets deposited atop surrounding bright flows. Several major bright features in Tharsis are associated with off-shield lava flows; these include the Olympus Mons basal plains, volcanic fields east and south of Pavonis Mons, the Daedalia Planum flows south of Arsia Mons, and a broad expanse of flows extending east from the Tharsis Montes to Echus Chasma. The radar-bright lava plains in Elysium are concentrated mainly in Cerberus and include the fluvio-volcanic channels of Athabasca Valles, Grjotá Valles, and Marte Valles, as well as an enigmatic region at the southern tip of the Cerberus basin. Some of the Cerberus bright features correspond to the distinctive "platy-ridged" flows identified in orbiter images. The radar-bright terrain in Amazonis Planitia comprises two distinct but contiguous sections: a northern section formed of lavas and sediments debouched from Marte Valles and a southern section whose volcanics may derive, in part, from local sources. This South Amazonis region shows perhaps the most complex radar-bright structure on Mars and includes features that correspond to platy-ridged flows similar to those in Cerberus.

Propagation of spiral waves pinned to circular and rectangular obstacles.

PubMed

Sutthiopad, Malee; Luengviriya, Jiraporn; Porjai, Porramain; Phantu, Metinee; Kanchanawarin, Jarin; Müller, Stefan C; Luengviriya, Chaiya

2015-05-01

We present an investigation of spiral waves pinned to circular and rectangular obstacles with different circumferences in both thin layers of the Belousov-Zhabotinsky reaction and numerical simulations with the Oregonator model. For circular objects, the area always increases with the circumference. In contrast, we varied the circumference of rectangles with equal areas by adjusting their width w and height h. For both obstacle forms, the propagating parameters (i.e., wavelength, wave period, and velocity of pinned spiral waves) increase with the circumference, regardless of the obstacle area. Despite these common features of the parameters, the forms of pinned spiral waves depend on the obstacle shapes. The structures of spiral waves pinned to circles as well as rectangles with the ratio w/h∼1 are similar to Archimedean spirals. When w/h increases, deformations of the spiral shapes are observed. For extremely thin rectangles with w/h≫1, these shapes can be constructed by employing semicircles with different radii which relate to the obstacle width and the core diameter of free spirals.

Photo-induced spin and valley-dependent Seebeck effect in the low-buckled Dirac materials

NASA Astrophysics Data System (ADS)

Mohammadi, Yawar

2018-04-01

Employing the Landauer-Buttiker formula we investigate the spin and valley dependence of Seebeck effect in low-buckled Dirac materials (LBDMs), whose band structure are modulated by local application of a gate voltage and off-resonant circularly polarized light. We calculate the charge, spin and valley Seebeck coefficients of an irradiated LBDM as functions of electronic doping, light intensity and the amount of the electric field in the linear regime. Our calculation reveal that all Seebeck coefficients always shows an odd features with respect to the chemical potential. Moreover, we show that, due to the strong spin-orbit coupling in the LBDMs, the induced thermovoltage in the irradiated LBDMs is spin polarized, and can also become valley polarized if the gate voltage is applied too. It is also found that the valley (spin) polarization of the induced thermovoltage could be inverted by reversing the circular polarization of light or reversing the direction the electric field (only by reversing the circular polarization of light).

Investigation of electrodynamic stabilization and control of long orbiting tethers

NASA Technical Reports Server (NTRS)

Colombo, G.; Arnold, D.

1984-01-01

The state-of-the-art in tether modelling among participants in the Tethered Satellite System (TSS) Program, the slack tether and its behavior, and certain advanced applications of the tether to problems in orbital mechanics are identified. The features and applications of the TSS software set are reviewed. Modelling the slack tether analytically with as many as 50 mass points and the application of this new model to a study of the behavior of a broken tether near the Shuttle are described. A reel control algorithm developed by SAO and examples of its use are described, including an example which also demonstrates the use of the tether in transferring a heavy payload from a low-orbiting Shuttle to a high circular orbit. Capture of a low-orbiting payload by a Space Station in high circular orbit is described. Energy transfer within a dumbbell-type spacecraft by cyclical reeling operations or gravitational effects on the natural elasticity of the connecting tether, it is shown, can circularize the orbit of the spacecraft.

Gamma-ray vortices from nonlinear inverse Thomson scattering of circularly polarized light.

PubMed

Taira, Yoshitaka; Hayakawa, Takehito; Katoh, Masahiro

2017-07-10

Inverse Thomson scattering is a well-known radiation process that produces high-energy photons both in nature and in the laboratory. Nonlinear inverse Thomson scattering occurring inside an intense light field is a process which generates higher harmonic photons. In this paper, we theoretically show that the higher harmonic gamma-ray produced by nonlinear inverse Thomson scattering of circularly polarized light is a gamma-ray vortex, which means that it possesses a helical wave front and carries orbital angular momentum. Our work explains a recent experimental result regarding nonlinear inverse Thomson scattering that clearly shows an annular intensity distribution as a remarkable feature of a vortex beam. Our work implies that gamma-ray vortices should be produced in various situations in astrophysics in which high-energy electrons and intense circularly polarized light fields coexist. Nonlinear inverse Thomson scattering is a promising radiation process for realizing a gamma-ray vortex source based on currently available laser and accelerator technologies, which would be an indispensable tool for exploring gamma-ray vortex science.

Topologically trivial and nontrivial edge bands in graphene induced by irradiation

NASA Astrophysics Data System (ADS)

Yang, Mou; Cai, Zhi-Jun; Wang, Rui-Qiang; Bai, Yan-Kui

2016-08-01

We proposed a minimal model to describe the Floquet band structure of two-dimensional materials with light-induced resonant inter-band transition. We applied it to graphene to study the band features caused by the light irradiation. Linearly polarized light induces pseudo gaps (gaps are functions of wavevector), and circularly polarized light causes real gaps on the quasi-energy spectrum. If the polarization of light is linear and along the longitudinal direction of zigzag ribbons, flat edge bands appear in the pseudo gaps, and if it is in the lateral direction of armchair ribbons, curved edge bands can be found. For the circularly polarized cases, edge bands arise and intersect in the gaps of both types of ribbons. The edge bands induced by the circularly polarized light are helical and those by linearly polarized light are topologically trivial ones. The Chern number of the Floquet band, which reflects the number of pairs of helical edge bands in graphene ribbons, can be reduced into the winding number at resonance.

Design and operation of small biogas plants

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdel-Dayem, A.M.; Hamad, M.A.

1980-12-01

This paper concentrates on the experience gained from the adaptation of the Chinese biogas technology to rural areas of Egypt. Three different prototype digesters have been constructed. The first is a 10 M/sup 3/ rectangular digester of the water pressure type, the second is a 6 M/sup 3/ circular and shallow digester with domed roof and dished bottom. The third prototype unit with a capacity of 7 M/sup 3/ has been recently constructed. It combines the features of both plug flow and the Indian movable cap types. Provisions for solar heating of feed water, composting of effluent and attachments tomore » both latrine and animal shed were incorporated in the unit. The structural theory, design criteria, construction technique and cost estimation of the circular digester are described. Some operation and performance data of the circular digester are presented. This covers the effects of variation of ambient temperature on internal temperature, effects of temperature and pressure on the gas production rate and composition.« less

Optimization of the Optical Microelements Using High-Performance Computer Systems

NASA Astrophysics Data System (ADS)

Khonina, S. N.; Savelyev, D. A.

2015-01-01

We present a numerical analysis of the laser beam diffraction by a two-zone binary microlens for different focal lengths. Characteristics and features of diffraction of the Gaussian beam and the (0,1) Gauss-Laguerre mode with linear and circular polarizations by the considered element are studied.

Some aspects of geological information contained in LANDSAT images

NASA Technical Reports Server (NTRS)

Dejesusparada, N. (Principal Investigator); Liu, C. C.; Vitorello, I.; Meneses, P. R.

1980-01-01

The characteristics of MSS images and methods of interpretation are analyzed from a geological point of view. The supportive role of LANDSAT data are illustrated in several examples of surface expressions of geological features, such as synclines and anticlines, spectral characteristics of lithologic units, and circular impact structures.

Application of MSS/LANDSAT images to the structural study of recent sedimentary areas: Campos Sedimentary Basin, Rio de Janeiro, Brazil

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Barbosa, M. P.

1983-01-01

Visual and computer aided interpretation of MSS/LANDSAT data identified linear and circular features which represent the ""reflexes'' of the crystalline basement structures in the Cenozoic sediments of the emergent part of the Campos Sedimentary Basin.

Worktable on Wheels.

ERIC Educational Resources Information Center

Glockner, Mary

1969-01-01

This article briefly describes the function and features of the Smith Circular Learning Station used in Chattanooga, Tennessee's Head Start and Follow Through program. The stations are used in place of traditional rows of classroom desks. Each station consists of a mobile worktable and a set of stackable chairs. Children are allowed to move about…

Determination of absolute configuration of natural products: theoretical calculation of electronic circular dichroism as a tool

USDA-ARS?s Scientific Manuscript database

Determination of absolute configuration (AC) is one of the most challenging features in the structure elucidation of chiral natural products, especially those with complex structures. With revolutionary advancements in the area of quantum chemical calculations of chiroptical spectroscopy over the pa...

A note on boundary-layer pumping

NASA Astrophysics Data System (ADS)

Smith, S. H.

1981-05-01

The simple model of strong blowing across an impulsively started rotating disc is considered. The model shows features present in the two basic problems of spin-up in a circular cylinder and the flow between counter-rotating discs. The role of boundary layer pumping appears to be crucial in both situations.

Edge-following algorithm for tracking geological features

NASA Technical Reports Server (NTRS)

Tietz, J. C.

1977-01-01

Sequential edge-tracking algorithm employs circular scanning to point permit effective real-time tracking of coastlines and rivers from earth resources satellites. Technique eliminates expensive high-resolution cameras. System might also be adaptable for application in monitoring automated assembly lines, inspecting conveyor belts, or analyzing thermographs, or x ray images.

Aram Chaos: A Long Lived Subsurface Aqueous Environment with Strong Water Resource Potential for Human Missions on Mars

NASA Astrophysics Data System (ADS)

Sibille, L.; Mueller, R. P.; Niles, P. B.; Glotch, T.; Archer, P. D.; Bell, M. S.

2015-10-01

Aram Chaos is a 280-km-wide near-circular structure near the outflow channel Ares Vallis and Aureum Chaos. It is a compelling landing site for human explorers featuring multiple science ROIs with a compelling resource ROI with polyhydrated sulfates.

Subtypes of depression and their overlap in a naturalistic inpatient sample of major depressive disorder.

PubMed

Musil, Richard; Seemüller, Florian; Meyer, Sebastian; Spellmann, Ilja; Adli, Mazda; Bauer, Michael; Kronmüller, Klaus-Thomas; Brieger, Peter; Laux, Gerd; Bender, Wolfram; Heuser, Isabella; Fisher, Robert; Gaebel, Wolfgang; Schennach, Rebecca; Möller, Hans-Jürgen; Riedel, Michael

2018-03-01

Subtyping depression is important in order to further delineate biological causes of depressive syndromes. The aim of this study was to evaluate clinical and outcome characteristics of distinct subtypes of depression and to assess proportion and features of patients fulfilling criteria for more than one subtype. Melancholic, atypical and anxious subtypes of depression were assessed in a naturalistic sample of 833 inpatients using DSM-IV specifiers based on operationalized criteria. Baseline characteristics and outcome criteria at discharge were compared between distinct subtypes and their overlap. A substantial proportion of patients (16%) were classified with more than one subtype of depression, 28% were of the distinct anxious, 7% of the distinct atypical and 5% of the distinct melancholic subtype. Distinct melancholic patients had shortest duration of episode, highest baseline depression severity, but were more often early improvers; distinct anxious patients had higher NEO-Five Factor Inventory (NEO-FFI) neuroticism scores compared with patients with unspecific subtype. Melancholic patients with overlap of anxious features had worse treatment outcome compared to distinct melancholic and distinct anxious subtype. Distinct subtypes differed in only few variables and patients with overlap of depression subtypes may have independent clinical and outcome characteristics. Studies investigating biological causes of subtypes of depression should take influence of features of other subtypes into account. Copyright © 2017 John Wiley & Sons, Ltd.

Detecting chameleons: The astronomical polarization produced by chameleonlike scalar fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burrage, Clare; Davis, Anne-Christine; Shaw, Douglas J.

2009-02-15

We show that a coupling between chameleonlike scalar fields and photons induces linear and circular polarization in the light from astrophysical sources. In this context chameleonlike scalar fields include those of the Olive-Pospelov (OP) model, which describes a varying fine structure constant. We determine the form of this polarization numerically and give analytic expressions in two useful limits. By comparing the predicted signal with current observations we are able to improve the constraints on the chameleon-photon coupling and the coupling in the OP model by over 2 orders of magnitude. It is argued that, if observed, the distinctive form ofmore » the chameleon induced circular polarization would represent a smoking gun for the presence of a chameleon. We also report a tentative statistical detection of a chameleonlike scalar field from observations of starlight polarization in our galaxy.« less

On random search: Collection kinetics of Paramecia into a trap embedded in a closed domain

NASA Astrophysics Data System (ADS)

Deforet, Maxime; Duplat, Jérôme; Vandenberghe, Nicolas; Villermaux, Emmanuel

2010-06-01

We study the kinetics of a large number of organisms initially spread uniformly in a circular two-dimensional medium, at the center of which a smaller circular trap has been introduced. We take advantage of the acidophily of Paramecium caudatum, which, coming from a neutral medium, penetrates a region of moderate acidity but moves back in the opposite situation when it meets a sharp negative acidity gradient to quantify its rate of irreversible aggregation into a spot of acidified medium in water. Two regimes are distinguished: A ballistic regime characteristic of "fresh" paramecia where the organisms swim in a straight path with a well defined velocity and a Brownian regime characteristic of older paramecia where the mean free path of the organisms is smaller than the system size. Both regimes are characterized by distinct aggregation laws. They both result from a pure random trapping process that appears to have no adaptive strategy.

“FRIED EGG”: AN OCEANIC IMPACT CRATER IN THE MID-ATLANTIC?

NASA Astrophysics Data System (ADS)

Dias, F. C.; Lourenco, N.; Lobo, A.; Santos de Campos, A.; Pinto de Abreu, M.

2009-12-01

Analysis of a multibeam echosounder hydrographic survey performed in the Southern Azores Platform under the scope of the Portuguese Continental Shelf Project has revealed a large scale bathymetric structure nicknamed “Fried Egg” due to its well defined morphology. Laying at about 2km depth, this structure consists of a roughly circular 6km wide depression 110m below the surrounding ocean bottom, with a circular dome shaped central uplift 3km in diameter and with a base to top height of 300m. The associated backscatter signal presents a distinctive ring-like signature corresponding to the lower flank section of the dome, suggesting the outcrop of hard rock material. The remaining backscatter signal seems to correspond to widespread sediments. No lava flows are apparent either within the structure or on its surroundings. All these properties are compatible with the record of terrestrial impact craters, thus making of “Fried Egg” a potential oceanic impact crater.

Initial Observations of Lunar Impact Melts and Ejecta Flows with the Mini-RF Radar

NASA Technical Reports Server (NTRS)

Carter, Lynn M.; Neish, Catherine D.; Bussey, D. B. J.; Spudis, Paul D.; Patterson, G. Wesley; Cahill, Joshua T.; Raney, R. Keith

2011-01-01

The Mini-RF radar on the Lunar Reconnaissance Orbiter's spacecraft has revealed a great variety of crater ejecta flow and impact melt deposits, some of which were not observed in prior radar imaging. The craters Tycho and Glushko have long melt flows that exhibit variations in radar backscatter and circular polarization ratio along the flow. Comparison with optical imaging reveals that these changes are caused by features commonly seen in terrestrial lava flows, such as rafted plates, pressure ridges, and ponding. Small (less than 20 km) sized craters also show a large variety of features, including melt flows and ponds. Two craters have flow features that may be ejecta flows caused by entrained debris flowing across the surface rather than by melted rock. The circular polarization ratios (CPRs) of the impact melt flows are typically very high; even ponded areas have CPR values between 0.7-1.0. This high CPR suggests that deposits that appear smooth in optical imagery may be rough at centimeter- and decimeter- scales. In some places, ponds and flows are visible with no easily discernable source crater. These melt deposits may have come from oblique impacts that are capable of ejecting melted material farther downrange. They may also be associated with older, nearby craters that no longer have a radar-bright proximal ejecta blanket. The observed morphology of the lunar crater flows has implications for similar features observed on Venus. In particular, changes in backscatter along many of the ejecta flows are probably caused by features typical of lava flows.

Light in condensed matter in the upper atmosphere as the origin of homochirality: circularly polarized light from Rydberg matter.

PubMed

Holmlid, Leif

2009-01-01

Clouds of the condensed excited Rydberg matter (RM) exist in the atmospheres of comets and planetary bodies (most easily observed at Mercury and the Moon), where they surround the entire bodies. Vast such clouds are recently proposed to exist in the upper atmosphere of Earth (giving rise to the enormous features called noctilucent clouds, polar mesospheric clouds, and polar mesospheric summer radar echoes). It has been shown in experiments with RM that linearly polarized visible light scattered from an RM layer is transformed to circularly polarized light with a probability of approximately 50%. The circular Rydberg electrons in the magnetic field in the RM may be chiral scatterers. The magnetic and anisotropic RM medium acts as a circular polarizer probably by delaying one of the perpendicular components of the light wave. The delay process involved is called Rabi-flopping and gives delays of the order of femtoseconds. This strong effect thus gives intense circularly polarized visible and UV light within RM clouds. Amino acids and other chiral molecules will experience a strong interaction with this light field in the upper atmospheres of planets. The interaction will vary with the stereogenic conformation of the molecules and in all probability promote the survival of one enantiomer. Here, this strong effect is proposed to be the origin of homochirality. The formation of amino acids in the RM clouds is probably facilitated by the catalytic effect of RM.

Light in Condensed Matter in the Upper Atmosphere as the Origin of Homochirality: Circularly Polarized Light from Rydberg Matter

NASA Astrophysics Data System (ADS)

Holmlid, Leif

2009-08-01

Clouds of the condensed excited Rydberg matter (RM) exist in the atmospheres of comets and planetary bodies (most easily observed at Mercury and the Moon), where they surround the entire bodies. Vast such clouds are recently proposed to exist in the upper atmosphere of Earth (giving rise to the enormous features called noctilucent clouds, polar mesospheric clouds, and polar mesospheric summer radar echoes). It has been shown in experiments with RM that linearly polarized visible light scattered from an RM layer is transformed to circularly polarized light with a probability of approximately 50%. The circular Rydberg electrons in the magnetic field in the RM may be chiral scatterers. The magnetic and anisotropic RM medium acts as a circular polarizer probably by delaying one of the perpendicular components of the light wave. The delay process involved is called Rabi-flopping and gives delays of the order of femtoseconds. This strong effect thus gives intense circularly polarized visible and UV light within RM clouds. Amino acids and other chiral molecules will experience a strong interaction with this light field in the upper atmospheres of planets. The interaction will vary with the stereogenic conformation of the molecules and in all probability promote the survival of one enantiomer. Here, this strong effect is proposed to be the origin of homochirality. The formation of amino acids in the RM clouds is probably facilitated by the catalytic effect of RM.

Identification of differentially expressed circular RNAs in human colorectal cancer.

PubMed

Zhang, Peili; Zuo, Zhigui; Shang, Wenjing; Wu, Aihua; Bi, Ruichun; Wu, Jianbo; Li, Shaotang; Sun, Xuecheng; Jiang, Lei

2017-03-01

Circular RNA, a class of non-coding RNA, is a new group of RNAs and is related to tumorigenesis. Circular RNAs are suggested to be ideal candidate biomarkers with potential diagnostic and therapeutic implications. However, little is known about their expression in human colorectal cancer. In our study, differentially expressed circular RNAs were detected using circular RNA array in paired tumor and adjacent non-tumorous tissues from six colorectal cancer patients. Expression levels of selected circular RNAs (hsa_circRNA_103809 and hsa_circRNA_104700) were measured by real-time polymerase chain reaction in 170 paired colorectal cancer samples for validation. Statistical analyses were conducted to investigate the association between hsa_circRNA_103809 and hsa_circRNA_104700 expression levels and respective patient clinicopathological features. Receiver operating characteristic curve was constructed to evaluate the diagnostic values. Our results indicated that there were 125 downregulated and 76 upregulated circular RNAs in colorectal cancer tissues compared with normal tissues. We also first demonstrated that the expression levels of hsa_circRNA_103809 ( p < 0.0001) and hsa_circRNA_104700 ( p = 0.0003) were significantly lower in colorectal cancer than in normal tissues. The expression level of hsa_circRNA_103809 was significantly correlated with lymph node metastasis ( p = 0.021) and tumor-node-metastasis stage ( p = 0.011), and the expression level of hsa_circRNA_104700 was significantly correlated with distal metastasis ( p = 0.036). The area under receiver operating characteristic curves of hsa_circRNA_103809 and hsa_circRNA_104700 were 0.699 ( p < 0.0001) and 0.616 ( p < 0.0001), respectively. In conclusion, these results suggest that hsa_circRNA_103809 and hsa_circRNA_104700 may be potentially involved in the development of colorectal cancer and serve as potential biomarkers for the diagnosis of colorectal cancer.

Optical spectroscopic elucidation of beta-turns in disulfide bridged cyclic tetrapeptides.

PubMed

Borics, Attila; Murphy, Richard F; Lovas, Sándor

2007-01-01

Vibrational circular dichroism (VCD) spectroscopic features of type II beta-turns were characterized previously, but, criteria for differentiation between beta-turn types had not been established yet. Model tetrapeptides, cyclized through a disulfide bridge, were designed on the basis of previous experimental results and the observed incidence of amino acid residues in the i + 1 and i + 2 positions in beta-turns, to determine the features of VCD spectra of type I and II beta-turns. The results were correlated with electronic circular dichroism (ECD) spectra and VCD spectra calculated from conformational data obtained by molecular dynamics (MD) simulations. All cyclic tetrapeptides yielded VCD signals with a higher frequency negative and a lower frequency positive couplet with negative lobes overlapping. MD simulations confirmed the conformational homogeneity of these peptides in solution. Comparison with ECD spectroscopy, MD, and quantum chemical calculation results suggested that the low frequency component of VCD spectra originating from the tertiary amide vibrations could be used to distinguish between types of beta-turn structures. On the basis of this observation, VCD spectroscopic features of type II and VIII beta-turns and ECD spectroscopic properties of a type VIII beta-turn were suggested. The need for independent experimental as well as theoretical investigations to obtain decisive conformational information was recognized. Copyright 2006 Wiley Periodicals, Inc.

Iconography in Bradshaw rock art: breaking the circularity.

PubMed

Pettigrew, Jack

2011-09-01

Interpreting the symbols found in the rock art of an extinct culture is hampered by the fact that such symbols are culturally determined. How does one break the circularity inherent in the fact that the knowledge of both the symbols and the culture comes from the same source? In this study, the circularity is broken for the Bradshaw rock art of the Kimberley by seeking anchors from outside the culture. Bradshaw rock art in the Kimberley region of Australia and Sandawe rock art in the Kolo region of Eastern Tanzania were surveyed in six visits on foot, by vehicle, by helicopter and from published or shared images, as well as from the published and online images of Khoisan rock art. Uniquely shared images between Bradshaw and Sandawe art, such as the 'mushroom head' symbol of psilocybin use, link the two cultures and indicate that they were shamanistic. Therefore, many mysterious features in the art can be understood in terms of trance visualisations. A number of other features uniquely link Bradshaw and Sandawe cultures, such as a special affinity for small mammals. There are also many references to baobabs in early Bradshaw art but not later. This can be explained in the context of the Toba super-volcano, the likely human transport of baobabs to the Kimberley and the extraordinary utility of the baobab. Many more mysterious symbols in Bradshaw rock art might await interpretation using the approaches adopted here. © 2011 The Author. Clinical and Experimental Optometry © 2011 Optometrists Association Australia.

Economic Modeling and Analysis of Educational Vouchers

ERIC Educational Resources Information Center

Epple, Dennis; Romano, Richard

2012-01-01

The analysis of educational vouchers has evolved from market-based analogies to models that incorporate distinctive features of the educational environment. These distinctive features include peer effects, scope for private school pricing and admissions based on student characteristics, the linkage of household residential and school choices in…

Numerical Studies of Flow Past Two Side-by-Side Circular Cylinders

NASA Astrophysics Data System (ADS)

Shao, J.; Zhang, C.

Multiple circular cylindrical configurations are widely used in engineering applications. The fluid dynamics of the flow around two identical circular cylinders in side-by-side arrangement has been investigated by both experiments and numerical simulations. The center-to-center transverse pitch ratio T/D plays an important role in determining the flow features. It is observed that for 1 < T/D < 1.1 to 1.2, a single vortex street is formed; for 1.2< T/D < 2 to 2.2, bi-stable narrow and wide wakes are formed; for 2.7< T/D < 4 or 5, anti-phase or in-phase vortex streets are formed. In the current study, the vortex structures of turbulent flows past two slightly heated side-by-side circular cylinders are investigated employing the large eddy simulation (LES). Simulations are performed using a commercial CFD software, FLUENT. The Smagorinsky-Lilly subgrid-scale model is employed for the large eddy simulation. The Reynolds number based on free-stream velocity and cylinder diameter is 5 800, which is in the subcritical regime. The transverse pitch ratio T/D = 3 is investigated. Laminar boundary layer, transition in shear layer, flow separation, large vortex structures and flow interference in the wake are all involved in the flow. Such complex flow features make the current study a challenging task. Both flow field and temperature field are investigated. The calculated results are analyzed and compared with experimental data. The simulation results are qualitatively in accordance with experimental observations. Two anti-phase vortex streets are obtained by the large-eddy simulation, which agrees with the experimental observation. At this transverse pitch ratio, these two cylinders behave as independent, isolated single cylinder in cross flow. The time-averaged streamwise velocity and temperature at x/D=10 are in good agreement with the experimental data. Figure1 displays the instantaneous spanwise vorticity at the center plane.

China English: Its Distinctive Features

ERIC Educational Resources Information Center

Yang, Wei-dong; Dai, Wei-ping

2011-01-01

This paper attempts to expound that China English boasting its own distinctive features on the levels of phonology, words, sentences and discourse has been playing an irreplaceable role in intercultural activities, though still in its infancy and in the process of developing and perfecting itself, and it now makes every effort to move towards…

Environmental Assessment. Proposed Sahara Mustard Control on the Barry M. Goldwater Range - East

DTIC Science & Technology

2012-02-01

While some sites consist of only a few artifacts or a single archaeological feature such as a trail or a hearth ; others cover a large area and...such as hearths , roasting pits, and fire-affected rock, cleared areas or sleeping circles, linear and circular rock alignments, rock cairns, trails

Previously Unrecognized Large Lunar Impact Basins Revealed by Topographic Data

NASA Technical Reports Server (NTRS)

Frey, Herbert V.

2008-01-01

The discovery of a large population of apparently buried impact craters on Mars, revealed as Quasi- Circular Depressions (QCDs) in Mars Orbiting Laser Altimeter (MOLA) data [1,2,3] and as Circular Thin Areas (CTAs) [4] in crustal thickness model data [5] leads to the obvious question: are there unrecognized impact features on the Moon and other bodies in the solar system? Early analysis of Clementine topography revealed several large impact basins not previously known [6,7], so the answer certainly is "Yes." How large a population of previously undetected impact basins, their size frequency distribution, and how much these added craters and basins will change ideas about the early cratering history and Late Heavy Bombardment on the Moon remains to be determined. Lunar Orbiter Laser Altimeter (LOLA) data [8] will be able to address these issues. As a prelude, we searched the state-of-the-art global topographic grid for the Moon, the Unified Lunar Control Net (ULCN) [9] for evidence of large impact features not previously recognized by photogeologic mapping, as summarized by Wilhelms [lo].

Circular blurred shape model for multiclass symbol recognition.

PubMed

Escalera, Sergio; Fornés, Alicia; Pujol, Oriol; Lladós, Josep; Radeva, Petia

2011-04-01

In this paper, we propose a circular blurred shape model descriptor to deal with the problem of symbol detection and classification as a particular case of object recognition. The feature extraction is performed by capturing the spatial arrangement of significant object characteristics in a correlogram structure. The shape information from objects is shared among correlogram regions, where a prior blurring degree defines the level of distortion allowed in the symbol, making the descriptor tolerant to irregular deformations. Moreover, the descriptor is rotation invariant by definition. We validate the effectiveness of the proposed descriptor in both the multiclass symbol recognition and symbol detection domains. In order to perform the symbol detection, the descriptors are learned using a cascade of classifiers. In the case of multiclass categorization, the new feature space is learned using a set of binary classifiers which are embedded in an error-correcting output code design. The results over four symbol data sets show the significant improvements of the proposed descriptor compared to the state-of-the-art descriptors. In particular, the results are even more significant in those cases where the symbols suffer from elastic deformations.

Combined optimization of image-gathering and image-processing systems for scene feature detection

NASA Technical Reports Server (NTRS)

Halyo, Nesim; Arduini, Robert F.; Samms, Richard W.

1987-01-01

The relationship between the image gathering and image processing systems for minimum mean squared error estimation of scene characteristics is investigated. A stochastic optimization problem is formulated where the objective is to determine a spatial characteristic of the scene rather than a feature of the already blurred, sampled and noisy image data. An analytical solution for the optimal characteristic image processor is developed. The Wiener filter for the sampled image case is obtained as a special case, where the desired characteristic is scene restoration. Optimal edge detection is investigated using the Laplacian operator x G as the desired characteristic, where G is a two dimensional Gaussian distribution function. It is shown that the optimal edge detector compensates for the blurring introduced by the image gathering optics, and notably, that it is not circularly symmetric. The lack of circular symmetry is largely due to the geometric effects of the sampling lattice used in image acquisition. The optimal image gathering optical transfer function is also investigated and the results of a sensitivity analysis are shown.

Molecular recognition principles and stationary-phase characteristics of topoisomer-selective chemoaffinity materials for chromatographic separation of circular plasmid DNA topoisomers.

PubMed

Mahut, Marek; Lindner, Wolfgang; Lämmerhofer, Michael

2012-01-18

We recently discovered the molecular recognition capability of a quinine carbamate ligand attached to silica as a powerful chemoaffinity material for the chromatographic separation of circular plasmid topoisomers of different linking numbers. In this paper we develop structure-selectivity relationship studies to figure out the essential structural features for topoisomer recognition. By varying different moieties of the original cinchonan-derived selector, it was shown that intercalation by the quinoline moiety of the ligand as assumed initially as the working hypothesis is not an essential feature for topoisomer recognition during chromatography. We found that the key elements for topoisomer selectivity are the presence of a rigid weak anion-exchange site and a H-donor site separated from each other in a defined distance by a 4-atom spacer. Additionally, incorporation of the weak anion-exchange site into a cyclic ring structure provides greater rigidity of the ligand molecule and turned out to be advantageous, if not mandatory, for (close to) baseline separation. © 2011 American Chemical Society

Discovery and Analysis of 21 micrometer Feature Sources in the Magellanic Clouds (Postprint)

DTIC Science & Technology

2011-07-10

either definitely or may show the 21 μm feature have distinct dust shell properties compared to the Galactic 21 μm objects—the 21 μm features are weaker...13 objects that either definitely or may show the 21μm feature have distinct dust shell properties compared to the Galactic 21μm objects—the 21μm...SMC object J004441 than it is to the spectra of any of the other LMC objects. The optical counterpart, while definitely detected in the MCPS (V ∼ 18.4

Anomalous, non-Gaussian tracer diffusion in crowded two-dimensional environments

NASA Astrophysics Data System (ADS)

Ghosh, Surya K.; Cherstvy, Andrey G.; Grebenkov, Denis S.; Metzler, Ralf

2016-01-01

A topic of intense current investigation pursues the question of how the highly crowded environment of biological cells affects the dynamic properties of passively diffusing particles. Motivated by recent experiments we report results of extensive simulations of the motion of a finite sized tracer particle in a heterogeneously crowded environment made up of quenched distributions of monodisperse crowders of varying sizes in finite circular two-dimensional domains. For given spatial distributions of monodisperse crowders we demonstrate how anomalous diffusion with strongly non-Gaussian features arises in this model system. We investigate both biologically relevant situations of particles released either at the surface of an inner domain or at the outer boundary, exhibiting distinctly different features of the observed anomalous diffusion for heterogeneous distributions of crowders. Specifically we reveal an asymmetric spreading of tracers even at moderate crowding. In addition to the mean squared displacement (MSD) and local diffusion exponent we investigate the magnitude and the amplitude scatter of the time averaged MSD of individual tracer trajectories, the non-Gaussianity parameter, and the van Hove correlation function. We also quantify how the average tracer diffusivity varies with the position in the domain with a heterogeneous radial distribution of crowders and examine the behaviour of the survival probability and the dynamics of the tracer survival probability. Inter alia, the systems we investigate are related to the passive transport of lipid molecules and proteins in two-dimensional crowded membranes or the motion in colloidal solutions or emulsions in effectively two-dimensional geometries, as well as inside supercrowded, surface adhered cells.

Toward a model for lexical access based on acoustic landmarks and distinctive features

NASA Astrophysics Data System (ADS)

Stevens, Kenneth N.

2002-04-01

This article describes a model in which the acoustic speech signal is processed to yield a discrete representation of the speech stream in terms of a sequence of segments, each of which is described by a set (or bundle) of binary distinctive features. These distinctive features specify the phonemic contrasts that are used in the language, such that a change in the value of a feature can potentially generate a new word. This model is a part of a more general model that derives a word sequence from this feature representation, the words being represented in a lexicon by sequences of feature bundles. The processing of the signal proceeds in three steps: (1) Detection of peaks, valleys, and discontinuities in particular frequency ranges of the signal leads to identification of acoustic landmarks. The type of landmark provides evidence for a subset of distinctive features called articulator-free features (e.g., [vowel], [consonant], [continuant]). (2) Acoustic parameters are derived from the signal near the landmarks to provide evidence for the actions of particular articulators, and acoustic cues are extracted by sampling selected attributes of these parameters in these regions. The selection of cues that are extracted depends on the type of landmark and on the environment in which it occurs. (3) The cues obtained in step (2) are combined, taking context into account, to provide estimates of ``articulator-bound'' features associated with each landmark (e.g., [lips], [high], [nasal]). These articulator-bound features, combined with the articulator-free features in (1), constitute the sequence of feature bundles that forms the output of the model. Examples of cues that are used, and justification for this selection, are given, as well as examples of the process of inferring the underlying features for a segment when there is variability in the signal due to enhancement gestures (recruited by a speaker to make a contrast more salient) or due to overlap of gestures from neighboring segments.

Distinctive Feature Extraction for Indian Sign Language (ISL) Gesture using Scale Invariant Feature Transform (SIFT)

NASA Astrophysics Data System (ADS)

Patil, Sandeep Baburao; Sinha, G. R.

2017-02-01

India, having less awareness towards the deaf and dumb peoples leads to increase the communication gap between deaf and hard hearing community. Sign language is commonly developed for deaf and hard hearing peoples to convey their message by generating the different sign pattern. The scale invariant feature transform was introduced by David Lowe to perform reliable matching between different images of the same object. This paper implements the various phases of scale invariant feature transform to extract the distinctive features from Indian sign language gestures. The experimental result shows the time constraint for each phase and the number of features extracted for 26 ISL gestures.

The predominant circular form of avocado sunblotch viroid accumulates in planta as a free RNA adopting a rod-shaped secondary structure unprotected by tightly bound host proteins.

PubMed

López-Carrasco, Amparo; Flores, Ricardo

2017-07-01

Avocado sunblotch viroid (ASBVd), the type member of the family Avsunviroidae, replicates and accumulates in chloroplasts. Whether this minimal non-protein-coding circular RNA of 246-250 nt exists in vivo as a free nucleic acid or closely associated with host proteins remains unknown. To tackle this issue, the secondary structures of the monomeric circular (mc) (+) and (-) strands of ASBVd have been examined in silico by searching those of minimal free energy, and in vitro at single-nucleotide resolution by selective 2'-hydroxyl acylation analysed by primer extension (SHAPE). Both approaches resulted in predominant rod-like secondary structures without tertiary interactions, with the mc (+) RNA being more compact than its (-) counterpart as revealed by non-denaturing polyacryamide gel electrophoresis. Moreover, in vivo SHAPE showed that the mc ASBVd (+) form accumulates in avocado leaves as a free RNA adopting a similar rod-shaped conformation unprotected by tightly bound host proteins. Hence, the mc ASBVd (+) RNA behaves in planta like the previously studied mc (+) RNA of potato spindle tuber viroid, the type member of nuclear viroids (family Pospiviroidae), indicating that two different viroids replicating and accumulating in distinct subcellular compartments, have converged into a common structural solution. Circularity and compact secondary structures confer to these RNAs, and probably to all viroids, the intrinsic stability needed to survive in their natural habitats. However, in vivo SHAPE has not revealed the (possibly transient or loose) interactions of the mc ASBVd (+) RNA with two host proteins observed previously by UV irradiation of infected avocado leaves.

Tectonics and volcanism of Eastern Aphrodite Terra: No subduction, no spreading

NASA Technical Reports Server (NTRS)

Hansen, Vicki L.; Keep, Myra; Herrick, Robert R.; Phillips, Roger J.

1992-01-01

Eastern Aphrodite Terra is approximately equal in size to the western North American Cordillera, from Mexico to Alaska. Its size and unique landforms make it an important area for understanding the tectonics of Venus, yet models for its formation are diametrically opposed. This region is part of the Equatorial Highlands, which was proposed as a region of lithospheric thinning, isostatic uplift, and attendant volcanism. Eastern Aphrodite Terra is dominated by circular structures within which deformation and volcanism are intimately related. These structures are marked by radial and concentric fractures, and volcanic flows that emanate from a central vent, as well as from concentric fracture sets. Cross-cutting relations between flows and concentric fracture sets indicate that outer concentric fracture sets are younger than inner fracture sets. The circular structures are joined by regional northeast- to east-trending fractures that dominantly postdate formation of the circular structures. We propose that the circular structures 'grow' outward with time. Although these structures probably represent addition of crust to the lithosphere, they do not represent significant lithospheric spreading or convergence, and the region does not mark the boundary between two distinct tectonic plates. This region is not easily explained by analogy with either terrestrial midocean rifts or subduction zones. It is perhaps best explained by upwelling of magma diapirs that blister the surface, but do not cause significant lithospheric spreading. Further study of the structural and volcanic evolution of this region using Magellan altimetry and SAR data should lead to better understanding of the tectonic evolution of this region.

Partially-Exhumed Crater in Northern Terra Meridiani: Stereo Anaglyph of overlapping coverage in

NASA Technical Reports Server (NTRS)

2002-01-01

MGS MOC Release No. MOC2-316, 8 August 2002 Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) images have shown time and again that the geology and history of Mars is complex. These two pictures show different views of a circular feature in northern Terra Meridiani at 2.3oN, 356.6oW. The first is a mosaic of 3 MOC narrow angle images acquired in August 1999, November 2000, and June 2002. The black area is a gap in coverage resulting from data lost after transmission from Mars to Earth. The second picture is a stereo ('3-D') anaglyph of a portion of the same circular feature. It has been rotated 90o clockwise to show the stereo effect that results from combining the August 1999 image, which was taken while the spacecraft was pointed nadir (straight down) and the June 2002 image, taken with the spacecraft pointing backwards about 16o (i.e., MGS Relay-16 orientation). The anaglyph should be viewed with '3-D' glasses (red in left eye, blue in the right). The circular feature was once an impact crater. The crater was 2.6 km (1.6 mi) across, about 2.6 times larger than the famous Meteor Crater in northern Arizona. Terra Meridiani, like northern Arizona, is a region of vast exposures of layered sedimentary rock. Like the crater in Arizona, this one was formed by a meteor that impacted a layered rock substrate. Later, this crater was filled and completely buried under more than 100 m (more than 327 ft) of additional layered sediment. The sediment hardened to become rock. Later still, the rock was eroded away--by processes unknown (perhaps wind)--to re-expose the buried crater. The crater today remains mostly filled with sediment, its present rim standing only about 40 m (130 ft) above its surroundings.

Buried topography of Utopia, Mars - Persistence of a giant impact depression

NASA Technical Reports Server (NTRS)

Mcgill, George E.

1989-01-01

Knobs, partially buried craters, ring fractures, and some mesas permit a qualitative determination of the topography buried beneath younger northern plains materials. These features are widely distributed in the Utopia area but are absent in a large, roughly circular region centered at about 48 deg N, 240 deg W. This implies the existence of a circular depression about 3300 km in diameter buried beneath Utopia Planitia that is interpreted to represent the central part of a very large impact basin. The presence of buried curved massifs around part of this depression, and a roughly coincident mascon, lend further support. Present topography, areal geology, and paleotopography of buried surfaces all point to the persistence of this major depression for almost the entire history of Mars.

Plastic buckling. [post-bifurcation and imperfection sensitivity

NASA Technical Reports Server (NTRS)

Hutchinson, J. W.

1974-01-01

The present article is concerned mainly with the post-bifurcation and imperfection-sensitivity aspects of plastic buckling. A simple two-degree-of-freedom model is used to introduce post-bifurcation behavior and a second model illustrates features of the behavior of continuous solids and structures. Hill's bifurcation criterion for a class of three-dimensional solids is applied to the Donnell-Mushtari-Vlasov (DMV) theory of plates and shells. A general treatment of the initial post-bifurcation behavior of plates and shells is given within the context of the DMV theory. This is illustrated by problems involving columns and circular plates under radial compression. Numerical results are given for a column under axial compression, a circular plate under radial compression, and spherical and cylindrical shells.

Wave journal bearing with compressible lubricant--Part 1: The wave bearing concept and a comparison to the plain circular bearing

NASA Technical Reports Server (NTRS)

Dimofte, Florin

1995-01-01

To improve hydrodynamic journal bearing steady-state and dynamic performance, a new bearing concept, the wave journal bearing, was developed at the author's lab. This concept features a waved inner bearing diameter. Compared to other alternative bearing geometries used to improve bearing performance such as spiral or herring-bone grooves, steps, etc., the wave bearing's design is relatively simple and allows the shaft to rotate in either direction. A three-wave bearing operating with a compressible lubricant, i.e., gas is analyzed using a numerical code. Its performance is compared to a plain (truly) circular bearing over a broad range of bearing working parameters, e.g., bearing numbers from 0.01 to 100.

Characteristics of microstrip muscle-loaded single-arm Archimedean spiral antennas as investigated by FDTD numerical computations.

PubMed

Jacobsen, Svein; Rolfsnes, Hans Olav; Stauffer, Paul R

2005-02-01

The radiation characteristics and mode of operation of single-arm, groundplane backed, Archimedean spiral antennas are investigated by means of conformal finite difference time domain numerical analysis. It is shown that this antenna type may be categorized as a well-matched, broadband, circularly polarized traveling wave structure that can be fed directly by nonbalanced coaxial networks. The study further concentrates on relevant design and description features parameterized in terms of measures like radiation efficiency, sensing depth, directivity, and axial ratio of complementary polarizations. We document that an antenna of only 30-mm transverse size produces circularly polarized waves in a two-octave frequency span (2-8 GHz) with acceptable radiation efficiency (76%-94%) when loaded by muscle-like tissue.

Spontaneous ordering and vortex states of active fluids in circular confinement

NASA Astrophysics Data System (ADS)

Theillard, Maxime; Ezhilan, Barath; Saintillan, David

2015-11-01

Recent experimental, theoretical and simulation studies have shown that confinement can profoundly affect self-organization in active suspensions leading to striking features such as directed fluid pumping in planar confinement, formation of steady and spontaneous vortices in radial confinement. Motivated by this, we study the dynamics in a suspension of biologically active particles confined in spherical geometries using a mean-field kinetic theory for which we developed a novel numerical solver. In the case of circular confinement, we conduct a systematic exploration of the entire parameter space and distinguish 3 broad states: no-flow, stable vortex and chaotic and several interesting sub-states. Our efficient numerical framework is also employed to study 3D effects and dynamics in more complex geometries.

Structure of chromatin and the linking number of DNA.

PubMed Central

Worcel, A; Strogatz, S; Riley, D

1981-01-01

Recent observations suggest that the basic supranucleosomal structure of chromatin is a zigzag helical ribbon with a repeat unit made of two nucleosomes connected by a relaxed spacer DNA. A remarkable feature of one particular ribbon is that it solves the apparent paradox between the number of DNA turns per nucleosome and the total linking number of a nucleosome-containing closed circular DNA molecule. We show here that the repeat unit of the proposed structure, which contains two nucleosomes with -1 3/4 DNA turns per nucleosome and one spacer crossover per repeat, contributes -2 to the linking number of closed circular DNA. Space-filling models show that the cylindrical 250-A chromatin fiber can be generated by twisting the ribbon. Images PMID:6940168

Circular RNAs: analysis, expression and potential functions

PubMed Central

Salzman, Julia

2016-01-01

Just a few years ago, it had been assumed that the dominant RNA isoforms produced from eukaryotic genes were variants of messenger RNA, functioning as intermediates in gene expression. In early 2012, however, a surprising discovery was made: circular RNA (circRNA) was shown to be a transcriptional product in thousands of human and mouse genes and in hundreds of cases constituted the dominant RNA isoform. Subsequent studies revealed that the expression of circRNAs is developmentally regulated, tissue and cell-type specific, and shared across the eukaryotic tree of life. These features suggest important functions for these molecules. Here, we describe major advances in the field of circRNA biology, focusing on the regulation of and functional roles played by these molecules. PMID:27246710

A simplified model of biosonar echoes from foliage and the properties of natural foliages.

PubMed

Ming, Chen; Zhu, Hongxiao; Müller, Rolf

2017-01-01

Foliage echoes could play an important role in the sensory ecology of echolocating bats, but many aspects of their sensory information content remain to be explored. A realistic numerical model for these echoes could support the development of hypotheses for the relationship between foliage properties and echo parameters. In prior work by the authors, a simple foliage model based on circular disks distributed uniformly in space has been developed. In the current work, three key simplifications used in this model have been examined: (i) representing leaves as circular disks, (ii) neglecting shading effects between leaves, and (iii) the uniform spatial distribution of the leaves. The target strengths of individual leaves and shading between them have been examined in physical experiments, whereas the impact of the spatial leaf distribution has been studied by modifying the numerical model to include leaf distributions according to a biomimetic model for natural branching patterns (L-systems). Leaf samples from a single species (leatherleaf arrowwood) were found to match the relationship between size and target strength of the disk model fairly well, albeit with a large variability part of which could be due to unaccounted geometrical features of the leaves. Shading between leaf-sized disks did occur for distances below 50 cm and could hence impact the echoes. Echoes generated with L-system models in two distinct tree species (ginkgo and pine) showed consistently more temporal inhomogeneity in the envelope amplitudes than a reference with uniform distribution. However, these differences were small compared to effects found in response to changes in the relative orientation of simulated sonar beam and foliage. These findings support the utility of the uniform leaf distribution model and suggest that bats could use temporal inhomogeneities in the echoes to make inferences regarding the relative positioning of their sonar and a foliage.

A simplified model of biosonar echoes from foliage and the properties of natural foliages

PubMed Central

Zhu, Hongxiao; Müller, Rolf

2017-01-01

Foliage echoes could play an important role in the sensory ecology of echolocating bats, but many aspects of their sensory information content remain to be explored. A realistic numerical model for these echoes could support the development of hypotheses for the relationship between foliage properties and echo parameters. In prior work by the authors, a simple foliage model based on circular disks distributed uniformly in space has been developed. In the current work, three key simplifications used in this model have been examined: (i) representing leaves as circular disks, (ii) neglecting shading effects between leaves, and (iii) the uniform spatial distribution of the leaves. The target strengths of individual leaves and shading between them have been examined in physical experiments, whereas the impact of the spatial leaf distribution has been studied by modifying the numerical model to include leaf distributions according to a biomimetic model for natural branching patterns (L-systems). Leaf samples from a single species (leatherleaf arrowwood) were found to match the relationship between size and target strength of the disk model fairly well, albeit with a large variability part of which could be due to unaccounted geometrical features of the leaves. Shading between leaf-sized disks did occur for distances below 50 cm and could hence impact the echoes. Echoes generated with L-system models in two distinct tree species (ginkgo and pine) showed consistently more temporal inhomogeneity in the envelope amplitudes than a reference with uniform distribution. However, these differences were small compared to effects found in response to changes in the relative orientation of simulated sonar beam and foliage. These findings support the utility of the uniform leaf distribution model and suggest that bats could use temporal inhomogeneities in the echoes to make inferences regarding the relative positioning of their sonar and a foliage. PMID:29240840

Structural features of diverse Pin-II proteinase inhibitor genes from Capsicum annuum.

PubMed

Mahajan, Neha S; Dewangan, Veena; Lomate, Purushottam R; Joshi, Rakesh S; Mishra, Manasi; Gupta, Vidya S; Giri, Ashok P

2015-02-01

The proteinase inhibitor (PI) genes from Capsicum annuum were characterized with respect to their UTR, introns and promoter elements. The occurrence of PIs with circularly permuted domain organization was evident. Several potato inhibitor II (Pin-II) type proteinase inhibitor (PI) genes have been analyzed from Capsicum annuum (L.) with respect to their differential expression during plant defense response. However, complete gene characterization of any of these C. annuum PIs (CanPIs) has not been carried out so far. Complete gene architectures of a previously identified CanPI-7 (Beads-on-string, Type A) and a member of newly isolated Bracelet type B, CanPI-69 are reported in this study. The 5' UTR (untranslated region), 3'UTR, and intronic sequences of both the CanPI genes were obtained. The genomic sequence of CanPI-7 exhibited, exon 1 (49 base pair, bp) and exon 2 (740 bp) interrupted by a 294-bp long type I intron. We noted the occurrence of three multi-domain PIs (CanPI-69, 70, 71) with circularly permuted domain organization. CanPI-69 was found to possess exon 1 (49 bp), exon 2 (551 bp) and a 584-bp long type I intron. The upstream sequence analysis of CanPI-7 and CanPI-69 predicted various transcription factor-binding sites including TATA and CAAT boxes, hormone-responsive elements (ABRELATERD1, DOFCOREZM, ERELEE4), and a defense-responsive element (WRKY71OS). Binding of transcription factors such as zinc finger motif MADS-box and MYB to the promoter regions was confirmed using electrophoretic mobility shift assay followed by mass spectrometric identification. The 3' UTR analysis for 25 CanPI genes revealed unique/distinct 3' UTR sequence for each gene. Structures of three domain CanPIs of type A and B were predicted and further analyzed for their attributes. This investigation of CanPI gene architecture will enable the better understanding of the genetic elements present in CanPIs.

Ultrastructural and geochemical characterization of Archean-Paleoproterozoic graphite particles: implications for recognizing traces of life in highly metamorphosed rocks.

PubMed

Schiffbauer, James D; Yin, Leiming; Bodnar, Robert J; Kaufman, Alan J; Meng, Fanwei; Hu, Jie; Shen, Bing; Yuan, Xunlai; Bao, Huiming; Xiao, Shuhai

2007-08-01

Abundant graphite particles occur in amphibolite-grade quartzite of the Archean-Paleoproterozoic Wutai Metamorphic Complex in the Wutaishan area of North China. Petrographic thin section observations suggest that the graphite particles occur within and between quartzite clasts and are heterogeneous in origin. Using HF maceration techniques, the Wutai graphite particles were extracted for further investigation. Laser Raman spectroscopic analysis of a population of extracted graphite discs indicated that they experienced a maximum metamorphic temperature of 513 +/- 50 degrees C, which is consistent with the metamorphic grade of the host rock and supports their indigenicity. Scanning and transmission electron microscopy revealed that the particles bear morphological features (such as hexagonal sheets of graphite crystals) related to metamorphism and crystal growth, but a small fraction of them (graphite discs) are characterized by a circular morphology, distinct marginal concentric folds, surficial wrinkles, and complex nanostructures. Ion microprobe analysis of individual graphite discs showed that their carbon isotope compositions range from -7.4 per thousand to -35.9 per thousand V-PDB (Vienna Pee Dee Belemnite), with an average of -20.3 per thousand, which is comparable to bulk analysis of extracted carbonaceous material. The range of their size, ultrastructures, and isotopic signatures suggests that the morphology and geochemistry of the Wutai graphite discs were overprinted by metamorphism and their ultimate carbon source probably had diverse origins that included abiotic processes. We considered both biotic and abiotic origins of the carbon source and graphite disc morphologies and cannot falsify the possibility that some circular graphite discs characterized by marginal folds and surficial wrinkles represent deflated, compressed, and subsequently graphitized organic-walled vesicles. Together with reports by other authors of acanthomorphic acritarchs from greenschist-amphibolite-grade metamorphic rocks, this study suggests that it is worthwhile to examine carbonaceous materials preserved in highly metamorphosed rocks for possible evidence of ancient life.

Coldspots and hotspots - Global tectonics and mantle dynamics of Venus

NASA Technical Reports Server (NTRS)

Bindschadler, Duane L.; Schubert, Gerald; Kaula, William M.

1992-01-01

Based on geologic observations provided by Magellan's first cycle of data collection and recent models of mantle convection in spherical shells and crustal deformation, the major topographic and geologic features of Venus are incorporated into a model of global mantle dynamics. Consideration is given to volcanic rises, such as Beta Regio and Atla Regio, plateau-shaped highlands dominated by complex ridged terrain (e.g., Ovda Regio and Alpha Regio), and circular lowland regions, such as Atalanta Planitia. Each of these features is related to either mantle plumes (hotspots) or mantle downwellings (coldspots).

New Lethal Skeletal Dysplasia with Dandy-Walker Malformation, Congenital Heart Defects, Abnormal Thumbs, Hypoplastic Genitalia, and Distinctive Facies

PubMed Central

Stevens, Cathy A.; Lachman, Ralph S.

2011-01-01

We report on two sibs with a lethal form of bone dysplasia with distinctive skeletal findings including rhizomelic and mesomelic limb shortening, hooked clavicles, dumbbell femurs, and absence of talus and calcaneus ossification. Other clinical features include Dandy-Walker malformation, congenital heart defects, joint contractures, genital hypoplasia, and distinctive facial features. These sibs appear to have a previously undescribed skeletal dysplasia, which is most likely inherited in an autosomal recessive fashion. PMID:20602491

Comparison of the Cartoons Created by the Gifted and Non-Gifted Students

ERIC Educational Resources Information Center

Kurnaz, Ahmet; Genç, Mehmet Ali

2017-01-01

When compared to their non-gifted peers, gifted students who have high-level talent, motivation and creativity are significantly different from other students in many respects. In addition to their distinct mental, physical and educational features, developed sense of humor is another distinct feature of these students. Also, currently no…

Reference conditions for old-growth redwood restoration on alluvial flats

Treesearch

Christa M. Dagley; John-Pascal. Berrill

2012-01-01

We quantified structural attributes in three alluvial flat old-growth coast redwood stands. Tree size parameters and occurrences of distinctive features (e.g., burls, goose pens) were similar between stands. Occurrence of distinctive features was greater among larger trees. Tree sizefrequency distributions conformed to a reverse-J diameter distribution. The range of...

SPATIALLY RESOLVED SPECTROSCOPY OF EUROPA: THE DISTINCT SPECTRUM OF LARGE-SCALE CHAOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fischer, P. D.; Brown, M. E.; Hand, K. P., E-mail: pfischer@caltech.edu

2015-11-15

We present a comprehensive analysis of spatially resolved moderate spectral resolution near-infrared spectra obtained with the adaptive optics system at the Keck Observatory. We identify three compositionally distinct end member regions: the trailing hemisphere bullseye, the leading hemisphere upper latitudes, and a third component associated with leading hemisphere chaos units. We interpret the composition of the three end member regions to be dominated by irradiation products, water ice, and evaporite deposits or salt brines, respectively. The third component is associated with geological features and distinct from the geography of irradiation, suggesting an endogenous identity. Identifying the endogenous composition is ofmore » particular interest for revealing the subsurface composition. However, its spectrum is not consistent with linear mixtures of the salt minerals previously considered relevant to Europa. The spectrum of this component is distinguished by distorted hydration features rather than distinct spectral features, indicating hydrated minerals but making unique identification difficult. In particular, it lacks features common to hydrated sulfate minerals, challenging the traditional view of an endogenous salty component dominated by Mg-sulfates. Chloride evaporite deposits are one possible alternative.« less

Structural Characteristics of the Plasmid-Encoded Toxin from Enteroaggregative Escherichia coli†

PubMed Central

Scaglione, Patricia; Nemec, Kathleen N.; Burlingame, Kaitlin E.; Grabon, Agnieszka; Huerta, Jazmin; Navarro-García, Fernando; Tatulian, Suren A.; Teter, Ken

2008-01-01

Intoxication by the plasmid-encoded toxin (Pet) of enteroaggregative Escherichia coli requires toxin translocation from the endoplasmic reticulum (ER) to the cytosol. This event involves the quality control system of ER-associated degradation (ERAD), but the molecular details of the process are poorly characterized. For many structurally distinct AB-type toxins, ERAD-mediated translocation is triggered by the spontaneous unfolding of a thermally unstable A chain. Here we show that Pet, a non-AB toxin, engages ERAD by a different mechanism that does not involve thermal unfolding. Circular dichroism and fluorescence spectroscopy measurements demonstrated that Pet maintains most of its secondary and tertiary structural features at 37°C, with significant thermal unfolding only occurring at temperatures ≥50°C. Fluorescence quenching experiments detected the partial solvent exposure of Pet aromatic amino acid residues at 37°C, and a cell-based assay suggested these changes could activate an ERAD-related event known as the unfolded protein response. We also found that HEp-2 cells were resistant to Pet intoxication when incubated with glycerol, a protein stabilizer. Altogether, our data are consistent with a model in which ERAD activity is triggered by a subtle structural destabilization of Pet and the exposure of Pet hydrophobic residues at physiological temperature. This was further supported by computer modeling analysis, which identified a surface-exposed hydrophobic loop among other accessible nonpolar residues in Pet. From our data it appears that Pet can promote its ERAD-mediated translocation into the cytosol by a distinct mechanism involving partial exposure of hydrophobic residues rather than the substantial unfolding observed for certain AB toxins. PMID:18702515

First record of Podocarpoid fossil wood in South China

PubMed Central

Li, Long; Jin, Jian-Hua; Quan, Cheng; Oskolski, Alexei A.

2016-01-01

A new species of fossil conifer wood, Podocarpoxylon donghuaiense sp. nov., is described from the late Eocene of Nadu Formation in Baise Basin of the Guangxi Province, South China. This fossil wood is characterized by distinct growth rings, circular to oval tracheids in cross section, 1–2-seriate opposite pits on radial tracheid walls, uniseriate (rarely biseriate) rays, smooth end walls of ray parenchyma cells, and the absence of resin ducts, suggesting its affinity to Podocarpaceae. The new species is distinctive from other Cenozoic woods ascribed to this family by the combination of distinctive growth rings, the absence of axial parenchyma, the occurrence of bordered pits on tangential tracheid walls, and the occurrence of 3–4 cuppressoid or taxodioid pits on cross-fields. This represents the first record of podocarpoid fossil wood in South China and provides fossil evidence for the early dispersal and diversification of Podocarpaceae in eastern Asia as well as for mild temperate seasonal climate in this region during the late Eocene. PMID:27571780

Elucidating the Role of the Proximal Cysteine Hydrogen Bonding Network in Ferric Cytochrome P450cam and corresponding mutants using Magnetic Circular Dichroism Spectroscopy†

PubMed Central

Galinato, Mary Grace I.; Spolitak, Tatyana; Ballou, David P.; Lehnert, Nicolai

2011-01-01

Although there has been extensive research on various Cytochrome P450s, especially Cyt P450cam, there is much to be learned about the mechanism of how its functional unit, a heme b ligated by an axial cysteine, is finely tuned for catalysis by its second coordination sphere. Here we study how the hydrogen bonding network affects the proximal cysteine and the Fe-S(Cys) bond in ferric Cyt P450cam. This is accomplished using low-temperature magnetic circular dichroism (MCD) spectroscopy on wild-type (wt) Cyt P450cam, and on the mutants Q360P (pure ferric high-spin at low temperature) and L358P with which the “Cys pocket” has been altered (by removing amino acids involved in the hydrogen bonding network), and Y96W (pure ferric low-spin). The MCD spectrum of Q360P reveals fourteen electronic transitions between 15200 and 31050 cm-1. Variable-temperature variable-field (VTVH) saturation curves were used to determine the polarizations of these electronic transitions, with respect to in-plane (xy) and out-of-plane (z) polarization relative to the heme. The polarizations, oscillator strengths, and TD-DFT calculations were then used to assign the observed electronic transitions. In the lower energy region, prominent bands at 15909 and 16919 cm-1 correspond to porphyrin (P) → Fe charge transfer (CT) transitions. The band at 17881 cm-1 has distinct sulfur S(π)→ Fe CT contributions. The Q band is observed as a pseudo A-term (derivative shape) at 18604 and 19539 cm-1. In the case of the Soret band, the negative component of the expected pseudo A-term is split into two features due to mixing with another π → π* and potentially a P → Fe CT excited state. These features are observed at 23731, 24859, and 25618 cm-1. Most importantly, the broad, prominent band at 28570 cm-1 is assigned to the S(σ)→ Fe CT transition, whose intensity is generated through a multitude of CT transitions with strong iron character. For wt, Q360P, and L358P, this band occurs at 28724, 28570, and 28620 cm-1, respectively. The small shift of this feature upon altering the hydrogen bonds to the proximal cysteine indicates that the role of the Cys pocket is not primarily for electronic fine tuning of the sulfur donor strength, but is more for stabilizing the proximal thiolate against external reactants (NO, O2, H3O+), and for properly positioning cysteine to coordinate to the iron center. This aspect is discussed in detail. PMID:21158478

Tunable acoustic absorbers with periodical micro-perforations having varying pore shapes

NASA Astrophysics Data System (ADS)

Ren, Shuwei; Liu, Xuewei; Gong, Junqing; Tang, Yufan; Xin, Fengxian; Huang, Lixi; Lu, Tian Jian

2017-11-01

Circular pores with sub-millimeter diameters have been widely used to construct micro-perforated panels (MPPs), the acoustical performance of which can be predicted well using the Maa theory (MAA D.-Y., J. Acoust. Soc. Am., 104 (1998) 2861). We present a tunable MPP absorber with periodically arranged cylindrical pores, with their cross-sectional shapes systematically altered around the circle while maintaining their cross-sectional areas unchanged. Numerical analyses based on the viscous-thermal coupled acoustical equations are utilized to investigate the tunable acoustic performance of the proposed absorbers and to reveal the underlying physical mechanisms. We demonstrate that pore morphology significantly affects the sound absorbption of MPPs by modifying the velocity field (and hence viscous dissipation) in the pores. Pore shapes featured as meso-scale circular pores accompanied with micro-scale bulges along the boundaries can lead to perfect sound absorption at relatively low frequencies. This work not only enriches the classical Maa theory on MPPs having circular perforations, but it also opens a new avenue for designing subwavelength acoustic metamaterials of superior sound absorption in target frequency ranges.

Rotating flux-focusing eddy current probe for flaw detection

NASA Technical Reports Server (NTRS)

Wincheski, Russell A. (Inventor); Fulton, James P. (Inventor); Nath, Shridhar C. (Inventor); Simpson, John W. (Inventor); Namkung, Min (Inventor)

1997-01-01

A flux-focusing electromagnetic sensor which uses a ferromagnetic flux-focusing lens simplifies inspections and increases detectability of fatigue cracks about circular fasteners and other circular inhomogeneities in high conductivity material. The unique feature of the device is the ferrous shield isolating a high-turn pick-up coil from an excitation coil, The use of the magnetic shield is shown to produce a null voltage output across the receiving coil in the presence of an unflawed sample. A redistribution of the current flow in the sample caused by the presence of flaws, however, eliminates the shielding condition and a large output voltage is produced, yielding a clear unambiguous flaw signal. By rotating the probe in a path around a circular fastener such as a rivet while maintaining a constant distance between the probe and the center of a rivet, the signal due to current flow about the rivet can be held constant. Any further changes in the current distribution, such as due to a fatigue crack at the rivet joint, can be detected as an increase in the output voltage above that due to the flow about the rivet head.

Laser mass spectrometry with circularly polarized light: circular dichroism of cold molecules in a supersonic gas beam.

PubMed

Titze, Katharina; Zollitsch, Tilo; Heiz, Ulrich; Boesl, Ulrich

2014-09-15

An experiment on chiral molecules that combines circular dichroism (CD) spectroscopy, mass-selective detection by laser mass spectrometry (MS), and cooling of molecules by using a supersonic beam is presented. The combination of the former two techniques (CD-laser-MS) is a new method to investigate chiral molecules and is now used by several research groups. Cooling in a supersonic beam supplies a substantial increase in spectroscopic resolution, a feature that has not yet been used in CD spectroscopy. In the experiments reported herein, a large variation in the electronic CD of carbonyl 3-methylcyclopentanone was observed depending on the excited vibrational modes in the n → π* transition. This finding should be of interest for the detection of chiral molecules and for the theoretical understanding of the CD of vibronic bands. It is expected that this effect will show up in other chiral carbonyls because the n → π* transition is typical for the carbonyl group. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Formation of contour optical traps using a four-channel liquid crystal focusing device

DOE Office of Scientific and Technical Information (OSTI.GOV)

Korobtsov, A V; Kotova, S P; Losevsky, N N

2014-12-31

The capabilities and specific features of the formation and dynamic control of so-called contour optical traps using a fourchannel liquid crystal modulator are studied theoretically and experimentally. Circular, elliptical and C-shaped traps are formed. Trapping and confinement of absorbing micro-objects by the formed traps are demonstrated. (optical traps)

Three-dimensional perspective views of Venusian Terrains composed of reduced resolution left-looking synthetic-aperture radar images merged with altimetry data from the Magellan spacecraft.

NASA Image and Video Library

1998-06-03

The view from NASA's Magellan spacecraft shows most of Galindo V-40 quadrangle looking east; Atete Corona, in the foreground, is a 600-km-long and about 450-km-wide, circular volcano-tectonic feature. http://photojournal.jpl.nasa.gov/catalog/PIA00096

¿Origen dinámico del polvo sobre la superficie de Iapetus?

NASA Astrophysics Data System (ADS)

Leiva, A. M.; Briozzo, C. B.

We implement the three-dimensional Circular Restricted Three Body Prob- lem for low energy particles entering the Saturn­Iapetus system from the recently discovered dust ring. The distribution of impacts with the surface of Iapetus so obtained shows features resembling that of the dark regions observed in this satellite. FULL TEXT IN SPANISH

Wavelet-based polarimetry analysis

NASA Astrophysics Data System (ADS)

Ezekiel, Soundararajan; Harrity, Kyle; Farag, Waleed; Alford, Mark; Ferris, David; Blasch, Erik

2014-06-01

Wavelet transformation has become a cutting edge and promising approach in the field of image and signal processing. A wavelet is a waveform of effectively limited duration that has an average value of zero. Wavelet analysis is done by breaking up the signal into shifted and scaled versions of the original signal. The key advantage of a wavelet is that it is capable of revealing smaller changes, trends, and breakdown points that are not revealed by other techniques such as Fourier analysis. The phenomenon of polarization has been studied for quite some time and is a very useful tool for target detection and tracking. Long Wave Infrared (LWIR) polarization is beneficial for detecting camouflaged objects and is a useful approach when identifying and distinguishing manmade objects from natural clutter. In addition, the Stokes Polarization Parameters, which are calculated from 0°, 45°, 90°, 135° right circular, and left circular intensity measurements, provide spatial orientations of target features and suppress natural features. In this paper, we propose a wavelet-based polarimetry analysis (WPA) method to analyze Long Wave Infrared Polarimetry Imagery to discriminate targets such as dismounts and vehicles from background clutter. These parameters can be used for image thresholding and segmentation. Experimental results show the wavelet-based polarimetry analysis is efficient and can be used in a wide range of applications such as change detection, shape extraction, target recognition, and feature-aided tracking.

ARC-1989-A89-7030

NASA Image and Video Library

1989-08-25

P-34692 Range : 500 km. ( 300 miles ) Smallest Resolvable Feature : 900 m. or 2,700 ft. Part of Triton's complex geological history canbe seen in this image, shot by Voyager 2. Part of a sequence, it shows a surface dominated by many roughly circular, polygonal, and arcuate features between 30 and 50 km (18 and 30 miles ) across. Some resemble degraded impact craters of Mars, while others resemble the 'palimpsest' features of Jupiter's satellite Ganymede. Peculiar intersecting, double ridged lines are 15 to 20 km. or 9 to 12 miles wide and hundreds of kilometers long. Theyresemble some deformational belts of Ganymede. Patches of plainsforming material tend to occur in local depressions. The geologic features of Triton and spectroscopic information indicates that the surface of Triton is underlain by a mixture of ices.

Effective traffic features selection algorithm for cyber-attacks samples

NASA Astrophysics Data System (ADS)

Li, Yihong; Liu, Fangzheng; Du, Zhenyu

2018-05-01

By studying the defense scheme of Network attacks, this paper propose an effective traffic features selection algorithm based on k-means++ clustering to deal with the problem of high dimensionality of traffic features which extracted from cyber-attacks samples. Firstly, this algorithm divide the original feature set into attack traffic feature set and background traffic feature set by the clustering. Then, we calculates the variation of clustering performance after removing a certain feature. Finally, evaluating the degree of distinctiveness of the feature vector according to the result. Among them, the effective feature vector is whose degree of distinctiveness exceeds the set threshold. The purpose of this paper is to select out the effective features from the extracted original feature set. In this way, it can reduce the dimensionality of the features so as to reduce the space-time overhead of subsequent detection. The experimental results show that the proposed algorithm is feasible and it has some advantages over other selection algorithms.

The DNA of ciliated protozoa.

PubMed Central

Prescott, D M

1994-01-01

Ciliates contain two types of nuclei: a micronucleus and a macronucleus. The micronucleus serves as the germ line nucleus but does not express its genes. The macronucleus provides the nuclear RNA for vegetative growth. Mating cells exchange haploid micronuclei, and a new macronucleus develops from a new diploid micronucleus. The old macronucleus is destroyed. This conversion consists of amplification, elimination, fragmentation, and splicing of DNA sequences on a massive scale. Fragmentation produces subchromosomal molecules in Tetrahymena and Paramecium cells and much smaller, gene-sized molecules in hypotrichous ciliates to which telomere sequences are added. These molecules are then amplified, some to higher copy numbers than others. rDNA is differentially amplified to thousands of copies per macronucleus. Eliminated sequences include transposonlike elements and sequences called internal eliminated sequences that interrupt gene coding regions in the micronuclear genome. Some, perhaps all, of these are excised as circular molecules and destroyed. In at least some hypotrichs, segments of some micronuclear genes are scrambled in a nonfunctional order and are recorded during macronuclear development. Vegetatively growing ciliates appear to possess a mechanism for adjusting copy numbers of individual genes, which corrects gene imbalances resulting from random distribution of DNA molecules during amitosis of the macronucleus. Other distinctive features of ciliate DNA include an altered use of the conventional stop codons. Images PMID:8078435

Large-scale De Novo Prediction of Physical Protein-Protein Association*

PubMed Central

Elefsinioti, Antigoni; Saraç, Ömer Sinan; Hegele, Anna; Plake, Conrad; Hubner, Nina C.; Poser, Ina; Sarov, Mihail; Hyman, Anthony; Mann, Matthias; Schroeder, Michael; Stelzl, Ulrich; Beyer, Andreas

2011-01-01

Information about the physical association of proteins is extensively used for studying cellular processes and disease mechanisms. However, complete experimental mapping of the human interactome will remain prohibitively difficult in the near future. Here we present a map of predicted human protein interactions that distinguishes functional association from physical binding. Our network classifies more than 5 million protein pairs predicting 94,009 new interactions with high confidence. We experimentally tested a subset of these predictions using yeast two-hybrid analysis and affinity purification followed by quantitative mass spectrometry. Thus we identified 462 new protein-protein interactions and confirmed the predictive power of the network. These independent experiments address potential issues of circular reasoning and are a distinctive feature of this work. Analysis of the physical interactome unravels subnetworks mediating between different functional and physical subunits of the cell. Finally, we demonstrate the utility of the network for the analysis of molecular mechanisms of complex diseases by applying it to genome-wide association studies of neurodegenerative diseases. This analysis provides new evidence implying TOMM40 as a factor involved in Alzheimer's disease. The network provides a high-quality resource for the analysis of genomic data sets and genetic association studies in particular. Our interactome is available via the hPRINT web server at: www.print-db.org. PMID:21836163

The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the ‘yeast mitochondrial genetic code’

PubMed Central

Szabóová, Dana; Bielik, Peter; Poláková, Silvia; Šoltys, Katarína; Jatzová, Katarína; Szemes, Tomáš

2017-01-01

Abstract The yeast Saccharomyces are widely used to test ecological and evolutionary hypotheses. A large number of nuclear genomic DNA sequences are available, but mitochondrial genomic data are insufficient. We completed mitochondrial DNA (mtDNA) sequencing from Illumina MiSeq reads for all Saccharomyces species. All are circularly mapped molecules decreasing in size with phylogenetic distance from Saccharomyces cerevisiae but with similar gene content including regulatory and selfish elements like origins of replication, introns, free-standing open reading frames or GC clusters. Their most profound feature is species-specific alteration in gene order. The genetic code slightly differs from well-established yeast mitochondrial code as GUG is used rarely as the translation start and CGA and CGC code for arginine. The multilocus phylogeny, inferred from mtDNA, does not correlate with the trees derived from nuclear genes. mtDNA data demonstrate that Saccharomyces cariocanus should be assigned as a separate species and Saccharomyces bayanus CBS 380T should not be considered as a distinct species due to mtDNA nearly identical to Saccharomyces uvarum mtDNA. Apparently, comparison of mtDNAs should not be neglected in genomic studies as it is an important tool to understand the origin and evolutionary history of some yeast species. PMID:28992063

Development of a 2-dof uterine manipulator with LED illumination system as a new transvaginal uterus amputation device for gynecological surgeries.

PubMed

Dikici, Serkan; Aldemir Dikici, Betül; Eser, Hakan; Gezgin, Erkin; Başer, Özgün; Şahin, Savaş; Yılmaz, Bülent; Oflaz, Hakan

2018-06-01

Hysterectomy, the most common major gynecological operation worldwide, consists of removal of the uterus and can be performed abdominally, vaginally, or laparoscopically. A uterine manipulator is a key device used for uterine manipulation and cannulation in hysterectomies. The challenges of conventional manipulators are to move the uterus in two distinct planes and to identify cervical landmarks during circular cut and coagulation. In this study, a structural synthesis of the two degrees of freedom parallel manipulator was performed considering the constraints noted by surgeons. Computer-aided design and assembly of the manipulator, the cervicovaginal cap with LEDs, and the external parts were performed before rapid prototyping. The final design of the uterine manipulator was then manufactured from stainless steel and tested on an artificial uterus model using a test chamber. This article presents the design, production and testing processes of an innovative manipulator with a motion capability up to 80° workspace both in the sagittal and coronal planes and an illumination system, easily detectable by the laparoscope, was successfully implemented on the manipulator's cervical cap in order to overcome the drawbacks of conventional uterine manipulators. Despite all the current studies and uterine manipulators on the market, no research has incorporated all the features mentioned above.

Standardized terminology and potential taxonomic utility for hadrosaurid skin impressions: a case study for Saurolophus from Canada and Mongolia.

PubMed

Bell, Phil R

2012-01-01

The characterization of palaeospecies typically relies on hard-tissue anatomy, such as bones or teeth that is more readily fossilized than soft parts. Among dinosaurs, skin impressions are commonly associated with partial and complete hadrosaurid skeletons, and consist of non-imbricating tubercles or scales. Skin impressions from various parts of the body of two species of the hadrosaurine Saurolophus (S. angustirostris from Mongolia and S. osborni from Canada) are described from multiple specimens. These species, recently validated on osteological grounds, can be differentiated based solely on soft-tissue anatomy, namely scale shape and pattern. This study demonstrates for the first time the applicability of soft-tissue (i.e., scale impressions) as a means to differentiate species within the Dinosauria. Differences are most spectacular in the tail, where S. angustirostris is differentiated by the presence of vertical bands of morphologically distinct scales, a grid-like arrangement of circular feature-scales, and tabular scales along the dorsal midline. Preliminary results indicate scale architecture remained consistent throughout ontogeny in S. angustirostris. These results support previous assertions that hadrosaurid scale architecture has a positive phylogenetic signal. As such, future taxonomic descriptions should include, where possible, the standardized description of skin impressions including the position and orientation of these impressions on the body.

Standardized Terminology and Potential Taxonomic Utility for Hadrosaurid Skin Impressions: A Case Study for Saurolophus from Canada and Mongolia

PubMed Central

Bell, Phil R.

2012-01-01

The characterization of palaeospecies typically relies on hard-tissue anatomy, such as bones or teeth that is more readily fossilized than soft parts. Among dinosaurs, skin impressions are commonly associated with partial and complete hadrosaurid skeletons, and consist of non-imbricating tubercles or scales. Skin impressions from various parts of the body of two species of the hadrosaurine Saurolophus (S. angustirostris from Mongolia and S. osborni from Canada) are described from multiple specimens. These species, recently validated on osteological grounds, can be differentiated based solely on soft-tissue anatomy, namely scale shape and pattern. This study demonstrates for the first time the applicability of soft-tissue (i.e., scale impressions) as a means to differentiate species within the Dinosauria. Differences are most spectacular in the tail, where S. angustirostris is differentiated by the presence of vertical bands of morphologically distinct scales, a grid-like arrangement of circular feature-scales, and tabular scales along the dorsal midline. Preliminary results indicate scale architecture remained consistent throughout ontogeny in S. angustirostris. These results support previous assertions that hadrosaurid scale architecture has a positive phylogenetic signal. As such, future taxonomic descriptions should include, where possible, the standardized description of skin impressions including the position and orientation of these impressions on the body. PMID:22319623

Successful Implantation of Bioengineered, Intrinsically Innervated, Human Internal Anal Sphincter

PubMed Central

Raghavan, Shreya; Gilmont, Robert R.; Miyasaka, Eiichi A.; Somara, Sita; Srinivasan, Shanthi; Teitelbaum, Daniel H; Bitar, Khalil N.

2011-01-01

Background & Aims To restore fecal continence, the weakened pressure of the internal anal sphincter (IAS) must be increased. We bioengineered intrinsically innervated human IAS, to emulate sphincteric physiology, in vitro. Methods We co-cultured human IAS circular smooth muscle with immortomouse fetal enteric neurons. We investigated the ability of bioengineered innervated human IAS, implanted in RAG1−/− mice, to undergo neovascularization and preserve the physiology of the constituent myogenic and neuronal components. Results The implanted IAS was neovascularized in vivo; numerous blood vessels were observed with no signs of inflammation or infection. Real-time force acquisition from implanted and pre-implant IAS showed distinct characteristics of IAS physiology. Features included the development of spontaneous myogenic basal tone; relaxation of 100% of basal tone in response to inhibitory neurotransmitter vasoactive intestinal peptide (VIP) and direct electrical field stimulation of the intrinsic innervation; inhibition of nitrergic and VIPergic EFS-induced relaxation (by antagonizing nitric oxide synthesis or receptor interaction); contraction in response to cholinergic stimulation with acetylcholine; and intact electromechanical coupling (evidenced by direct response to potassium chloride). Implanted, intrinsically innervated bioengineered human IAS tissue preserved the integrity and physiology of myogenic and neuronal components. Conclusion Intrinsically innervated human IAS bioengineered tissue can be successfully implanted in mice. This approach might be used to treat patients with fecal incontinence. PMID:21463628

Human mitochondrial pyruvate carrier 2 as an autonomous membrane transporter.

PubMed

Nagampalli, Raghavendra Sashi Krishna; Quesñay, José Edwin Neciosup; Adamoski, Douglas; Islam, Zeyaul; Birch, James; Sebinelli, Heitor Gobbi; Girard, Richard Marcel Bruno Moreira; Ascenção, Carolline Fernanda Rodrigues; Fala, Angela Maria; Pauletti, Bianca Alves; Consonni, Sílvio Roberto; de Oliveira, Juliana Ferreira; Silva, Amanda Cristina Teixeira; Franchini, Kleber Gomes; Leme, Adriana Franco Paes; Silber, Ariel Mariano; Ciancaglini, Pietro; Moraes, Isabel; Dias, Sandra Martha Gomes; Ambrosio, Andre Luis Berteli

2018-02-22

The active transport of glycolytic pyruvate across the inner mitochondrial membrane is thought to involve two mitochondrial pyruvate carrier subunits, MPC1 and MPC2, assembled as a 150 kDa heterotypic oligomer. Here, the recombinant production of human MPC through a co-expression strategy is first described; however, substantial complex formation was not observed, and predominantly individual subunits were purified. In contrast to MPC1, which co-purifies with a host chaperone, we demonstrated that MPC2 homo-oligomers promote efficient pyruvate transport into proteoliposomes. The derived functional requirements and kinetic features of MPC2 resemble those previously demonstrated for MPC in the literature. Distinctly, chemical inhibition of transport is observed only for a thiazolidinedione derivative. The autonomous transport role for MPC2 is validated in cells when the ectopic expression of human MPC2 in yeast lacking endogenous MPC stimulated growth and increased oxygen consumption. Multiple oligomeric species of MPC2 across mitochondrial isolates, purified protein and artificial lipid bilayers suggest functional high-order complexes. Significant changes in the secondary structure content of MPC2, as probed by synchrotron radiation circular dichroism, further supports the interaction between the protein and ligands. Our results provide the initial framework for the independent role of MPC2 in homeostasis and diseases related to dysregulated pyruvate metabolism.

Your Divided Attention, Please! The Maintenance of Multiple Attentional Control Sets over Distinct Regions in Space

ERIC Educational Resources Information Center

Adamo, Maha; Pun, Carson; Pratt, Jay; Ferber, Susanne

2008-01-01

When non-informative peripheral cues precede a target defined by a specific feature, cues that share the critical feature will capture attention while cues that do not will be effectively ignored. We tested whether different attentional control sets can be simultaneously maintained over distinct regions of space. Participants were instructed to…

Individual Distinctive Features of Self-Regulation Processes Peculiar to Students of Different Profiles of Lateral Organization

ERIC Educational Resources Information Center

Korneeva, Svetlana A.; Zherebnenko, Oksana A.; Mukhamedzyanova, Flera G.; Moskalenko, Svetlana V.; Gorelikova, Olga N.

2016-01-01

The research paper presents an analysis of the interrelation between the lateral organisation profiles' indicators and self-regulation features. The existence of significant distinctions in the processes of self-regulation among respondents with different variants of lateral profiles of the interhemispheric asymmetry is proved, as well as the…

A Minimal-Word-Pair Model for Teaching the Linguistic Significance of Distinctive Feature Properties.

ERIC Educational Resources Information Center

Blache, Stephen E.; And Others

1981-01-01

A word level behavioral routine for the remediation of distinctive feature errors was developed and taught to seven children (5 to 6 years old) with moderate to severe nonorganic phonological disabilities. A one-group pretest-posttest design established that the number and severity of the sound substitutions decreased with training. (Author)

Distinctions between Item Format and Objectivity in Scoring.

ERIC Educational Resources Information Center

Terwilliger, James S.

This paper clarifies important distinctions in item writing and item scoring and considers the implications of these distinctions for developing guidelines related to test construction for training teachers. The terminology used to describe and classify paper and pencil test questions frequently confuses two distinct features of questions:…

Elliptical morphotectonic features on Landsat imagery in southwestern New York, northwestern Pennsylvania, and northeastern Ohio

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pees, S.T.; Palmquist, J.C.

1984-12-01

Circular to elliptical patterns are expressed in many diverse ways and scales on earth's surface. Some are clearly of endogenic origin, whereas others are proved to be astroblemes. Many are still of indeterminate origin, but hypotheses have been offered to explain some of them. The Lake Chautauqua-Kinzua composite feature in New York and Pennsylvania is expressed by an inner ring of 29 km (18 mi) (long axis) and fragmented concentric bands extending up to 48 km (30 mi) from its center to include a curved part of the Allegheny River in the Kinzua reservoir area (Pennsylvania). It is bisected bymore » the northeast-southwest Chautauqua anticline and fault zone (decollement), locus of the Bass Islands-Akron dolomite oil and gas play. The Pymatuning reservoir, inverted teardrop feature of 34 km (21 mi) north-south length in Pennsylvania, is defined by impounded water and drainage courses bounding a topographically positive area. A slight anticlinal flexure is coaxial with the ellipse. A deep well found gas in the upper Gatesburg Formation. A nearly circular ring of 9.75 km (6 mi) diameter near New Lyme, Ashtabula County, Ohio, is seen as a tonal design on a specially enhanced composite false-color Landsat image. Elliptical patters may reflect deep deformation, differential compaction over buried basement hills, salt tectonics, filled negative areas, impact phenomena, or various other conditions that cause differences in surface configurations, surficial material, and moisture content. Investigation of such features, especially by seismic surveys and basement drill tests, is suggested for oil and gas exploration in this area.« less

Fronts and waves of actin polymerization in a bistability-based mechanism of circular dorsal ruffles

NASA Astrophysics Data System (ADS)

Bernitt, Erik; Döbereiner, Hans-Günther; Gov, Nir S.; Yochelis, Arik

2017-06-01

During macropinocytosis, cells remodel their morphologies for the uptake of extracellular matter. This endocytotic mechanism relies on the collapse and closure of precursory structures, which are propagating actin-based, ring-shaped vertical undulations at the dorsal (top) cell membrane, a.k.a. circular dorsal ruffles (CDRs). As such, CDRs are essential to a range of vital and pathogenic processes alike. Here we show, based on both experimental data and theoretical analysis, that CDRs are propagating fronts of actin polymerization in a bistable system. The theory relies on a novel mass-conserving reaction-diffusion model, which associates the expansion and contraction of waves to distinct counter-propagating front solutions. Moreover, the model predicts that under a change in parameters (for example, biochemical conditions) CDRs may be pinned and fluctuate near the cell boundary or exhibit complex spiral wave dynamics due to a wave instability. We observe both phenomena also in our experiments indicating the conditions for which macropinocytosis is suppressed.

A single circularly permuted GFP sensor for inositol-1,3,4,5-tetrakisphosphate based on a split PH domain.

PubMed

Sakaguchi, Reiko; Endoh, Takashi; Yamamoto, Seigo; Tainaka, Kazuki; Sugimoto, Kenji; Fujieda, Nobutaka; Kiyonaka, Shigeki; Mori, Yasuo; Morii, Takashi

2009-10-15

A fluorescent sensor for the detection of inositol-1,3,4,5-tetrakisphosphate, Ins(1,3,4,5)P(4), was constructed from a split PH domain and a single circularly permuted GFP. A structure-based design was conducted to transduce a ligand-induced subtle structural perturbation of the split PH domain to an alteration in the population of the protonated and the deprotonated states of the GFP chromophore. Excitation of each distinct absorption band corresponding to the protonated or the deprotonated state of GFP resulted an increase and a decrease, respectively, in the intensity of emission spectra upon addition of Ins(1,3,4,5)P(4) to the split PH domain-based sensor. The Ins(1,3,4,5)P(4) sensor retained the ligand affinity and the selectivity of the parent PH domain, and realized the ratiometric fluorescence detection of Ins(1,3,4,5)P(4).

Fronts and waves of actin polymerization in a bistability-based mechanism of circular dorsal ruffles

PubMed Central

Bernitt, Erik; Döbereiner, Hans-Günther; Gov, Nir S.; Yochelis, Arik

2017-01-01

During macropinocytosis, cells remodel their morphologies for the uptake of extracellular matter. This endocytotic mechanism relies on the collapse and closure of precursory structures, which are propagating actin-based, ring-shaped vertical undulations at the dorsal (top) cell membrane, a.k.a. circular dorsal ruffles (CDRs). As such, CDRs are essential to a range of vital and pathogenic processes alike. Here we show, based on both experimental data and theoretical analysis, that CDRs are propagating fronts of actin polymerization in a bistable system. The theory relies on a novel mass-conserving reaction–diffusion model, which associates the expansion and contraction of waves to distinct counter-propagating front solutions. Moreover, the model predicts that under a change in parameters (for example, biochemical conditions) CDRs may be pinned and fluctuate near the cell boundary or exhibit complex spiral wave dynamics due to a wave instability. We observe both phenomena also in our experiments indicating the conditions for which macropinocytosis is suppressed. PMID:28627511

A Conserved Circular Network of Coregulated Lipids Modulates Innate Immune Responses

PubMed Central

Köberlin, Marielle S.; Snijder, Berend; Heinz, Leonhard X.; Baumann, Christoph L.; Fauster, Astrid; Vladimer, Gregory I.; Gavin, Anne-Claude; Superti-Furga, Giulio

2015-01-01

Summary Lipid composition affects the biophysical properties of membranes that provide a platform for receptor-mediated cellular signaling. To study the regulatory role of membrane lipid composition, we combined genetic perturbations of sphingolipid metabolism with the quantification of diverse steps in Toll-like receptor (TLR) signaling and mass spectrometry-based lipidomics. Membrane lipid composition was broadly affected by these perturbations, revealing a circular network of coregulated sphingolipids and glycerophospholipids. This evolutionarily conserved network architecture simultaneously reflected membrane lipid metabolism, subcellular localization, and adaptation mechanisms. Integration of the diverse TLR-induced inflammatory phenotypes with changes in lipid abundance assigned distinct functional roles to individual lipid species organized across the network. This functional annotation accurately predicted the inflammatory response of cells derived from patients suffering from lipid storage disorders, based solely on their altered membrane lipid composition. The analytical strategy described here empowers the understanding of higher-level organization of membrane lipid function in diverse biological systems. PMID:26095250

Contact lens-induced peripheral ulcers with extended wear of disposable hydrogel lenses: histopathologic observations on the nature and type of corneal infiltrate.

PubMed

Holden, B A; Reddy, M K; Sankaridurg, P R; Buddi, R; Sharma, S; Willcox, M D; Sweeney, D F; Rao, G N

1999-09-01

Contact lens-induced peripheral ulcer (CLPU), a sudden-onset adverse event observed with extended wear of hydrogel lenses, is characterized by a single, small, circular, focal anterior stromal infiltrate in the corneal periphery or midperiphery. The condition is always associated with a significant overlying epithelial loss and resolves in a scar. The aim was to determine, by using histopathologic techniques, the nature and type of the corneal infiltrate of these events. Three CLPUs observed in three patients using disposable hydrogel lenses on an extended-wear schedule were examined. The eye was topically anesthetized, and a corneal section including all of the infiltrate was taken. A small triangular piece of conjunctiva immediately adjacent to the infiltrate was sectioned. The tissue was immediately fixed, processed, stained using hematoxylin and eosin and periodic acid-Schiff stains, and examined by using light microscopy. The diameter of these three corneal infiltrates varied from 0.3 to 0.6 mm. Histopathology of the corneal sections revealed a focal epithelial loss corresponding to the infiltrated stroma in all three patients. The adjacent epithelium was thinned. Bowman's layer was intact in two patients and had a localized area of loss in the remaining patient. The anterior stroma was densely infiltrated with polymorphonuclear leukocytes and had focal areas of necrosis. The infiltration was most dense in the region immediately underlying Bowman's layer. No other infiltrative cell type was seen in any of the sections. Histopathology of the conjunctiva revealed features consistent with normal conjunctival tissue. On histopathology of CLPU, distinctive features (i.e., focal corneal epithelial loss, an intact Bowman's membrane, and a localized infiltration of the anterior stroma with polymorphonuclear leukocytes) were seen. These features suggest that the event is an acute inflammatory process and probably noninfective in nature.

Associative learning in baboons (Papio papio) and humans (Homo sapiens): species differences in learned attention to visual features.

PubMed

Fagot, J; Kruschke, J K; Dépy, D; Vauclair, J

1998-10-01

We examined attention shifting in baboons and humans during the learning of visual categories. Within a conditional matching-to-sample task, participants of the two species sequentially learned two two-feature categories which shared a common feature. Results showed that humans encoded both features of the initially learned category, but predominantly only the distinctive feature of the subsequently learned category. Although baboons initially encoded both features of the first category, they ultimately retained only the distinctive features of each category. Empirical data from the two species were analyzed with the 1996 ADIT connectionist model of Kruschke. ADIT fits the baboon data when the attentional shift rate is zero, and the human data when the attentional shift rate is not zero. These empirical and modeling results suggest species differences in learned attention to visual features.

Orthogonal muscle fibres have different instructive roles in planarian regeneration.

PubMed

Scimone, M Lucila; Cote, Lauren E; Reddien, Peter W

2017-11-30

The ability to regenerate missing body parts exists throughout the animal kingdom. Positional information is crucial for regeneration, but how it is harboured and used by differentiated tissues is poorly understood. In planarians, positional information has been identified from study of phenotypes caused by RNA interference in which the wrong tissues are regenerated. For example, inhibition of the Wnt signalling pathway leads to regeneration of heads in place of tails. Characterization of these phenotypes has led to the identification of position control genes (PCGs)-genes that are expressed in a constitutive and regional manner and are associated with patterning. Most PCGs are expressed within planarian muscle; however, how muscle is specified and how different muscle subsets affect regeneration is unknown. Here we show that different muscle fibres have distinct regulatory roles during regeneration in the planarian Schmidtea mediterranea. myoD is required for formation of a specific muscle cell subset: the longitudinal fibres, oriented along the anterior-posterior axis. Loss of longitudinal fibres led to complete regeneration failure because of defects in regeneration initiation. A different transcription factor-encoding gene, nkx1-1, is required for the formation of circular fibres, oriented along the medial-lateral axis. Loss of circular fibres led to a bifurcated anterior-posterior axis with fused heads forming in single anterior blastemas. Whereas muscle is often viewed as a strictly contractile tissue, these findings reveal that different muscle types have distinct and specific regulatory roles in wound signalling and patterning to enable regeneration.

An on/off Berry phase switch in circular graphene resonators

NASA Astrophysics Data System (ADS)

Ghahari, Fereshte; Walkup, Daniel; Gutiérrez, Christopher; Rodriguez-Nieva, Joaquin F.; Zhao, Yue; Wyrick, Jonathan; Natterer, Fabian D.; Cullen, William G.; Watanabe, Kenji; Taniguchi, Takashi; Levitov, Leonid S.; Zhitenev, Nikolai B.; Stroscio, Joseph A.

2017-05-01

The phase of a quantum state may not return to its original value after the system’s parameters cycle around a closed path; instead, the wave function may acquire a measurable phase difference called the Berry phase. Berry phases typically have been accessed through interference experiments. Here, we demonstrate an unusual Berry phase-induced spectroscopic feature: a sudden and large increase in the energy of angular-momentum states in circular graphene p-n junction resonators when a relatively small critical magnetic field is reached. This behavior results from turning on a π Berry phase associated with the topological properties of Dirac fermions in graphene. The Berry phase can be switched on and off with small magnetic field changes on the order of 10 millitesla, potentially enabling a variety of optoelectronic graphene device applications.

Soft X-ray magnetic circular dichroism of Heusler-type alloy Co 2MnGe

NASA Astrophysics Data System (ADS)

Miyamoto, K.; Iori, K.; Kimura, A.; Xie, T.; Taniguchi, M.; Qiao, S.; Tsuchiya, K.

2003-10-01

Co and Mn 2p core absorption (XAS) and X-ray magnetic circular dichroism (XMCD) spectra have been measured for the ferromagnetic ternary alloy Co 2MnGe. The observed Co 2p XAS spectrum can be understood on the basis of the unoccupied Co 3d partial density of states, whereas the overall features of the Mn 2p XAS and XMCD spectra have been partly reproduced by the Mn 2p 53d 6 final state multiplets. We have found that the orbital polarization of the Co 3d and even the Mn 3d states are recognizable, which suggests that a spin-orbit coupling should be taken into account in the energy band structure in order to reproduce the half metallic nature of this alloy.

Onset of a Large Ejective Solar Eruption from a Typical Coronal-jet-base Field Configuration

NASA Astrophysics Data System (ADS)

Joshi, Navin Chandra; Sterling, Alphonse C.; Moore, Ronald L.; Magara, Tetsuya; Moon, Yong-Jae

2017-08-01

Utilizing multiwavelength observations and magnetic field data from the Solar Dynamics Observatory (SDO)/Atmospheric Imaging Assembly (AIA), SDO/Helioseismic and Magnetic Imager (HMI), the Geostationary Operational Environmental Satellite (GOES), and RHESSI, we investigate a large-scale ejective solar eruption of 2014 December 18 from active region NOAA 12241. This event produced a distinctive “three-ribbon” flare, having two parallel ribbons corresponding to the ribbons of a standard two-ribbon flare, and a larger-scale third quasi-circular ribbon offset from the other two. There are two components to this eruptive event. First, a flux rope forms above a strong-field polarity inversion line and erupts and grows as the parallel ribbons turn on, grow, and spread apart from that polarity inversion line; this evolution is consistent with the mechanism of tether-cutting reconnection for eruptions. Second, the eruption of the arcade that has the erupting flux rope in its core undergoes magnetic reconnection at the null point of a fan dome that envelops the erupting arcade, resulting in formation of the quasi-circular ribbon; this is consistent with the breakout reconnection mechanism for eruptions. We find that the parallel ribbons begin well before (˜12 minutes) the onset of the circular ribbon, indicating that tether-cutting reconnection (or a non-ideal MHD instability) initiated this event, rather than breakout reconnection. The overall setup for this large-scale eruption (diameter of the circular ribbon ˜105 km) is analogous to that of coronal jets (base size ˜104 km), many of which, according to recent findings, result from eruptions of small-scale “minifilaments.” Thus these findings confirm that eruptions of sheared-core magnetic arcades seated in fan-spine null-point magnetic topology happen on a wide range of size scales on the Sun.

Brandburg Prominance, Namibia, Africa

NASA Image and Video Library

1993-01-19

STS054-151-009 (13-19 Jan 1993) --- This large format camera's view shows the circular volcanic structure of the Brandberg mountain, which at 2630 meters (8,550 feet) is the highest point in the new nation of Namibia. The Brandberg is a major feature in the very arid Namib Desert on Africa's southwest coast. Coastal fog brings some moisture to the driest parts of the desert.

Identification of areas of recharge and discharge using Landsat-TM satellite imagery and aerial photography mapping techniques

NASA Astrophysics Data System (ADS)

Salama, R. B.; Tapley, I.; Ishii, T.; Hawkes, G.

1994-10-01

Aerial photographs (AP) and Landsat (TM) colour composites were used to map the geomorphology, geology and structures of the Salt River System of Western Australia. Geomorphic features identified are sand plains, dissected etchplain, colluvium, lateritic duricrust and rock outcrops. The hydrogeomorphic units include streams, lakes and playas, palaeochannels and palaeodeltas. The structural features are linear and curvilinear lineaments, ring structures and dolerite dykes. Suture lines control the course of the main river channel. Permeable areas around the circular granitic plutons were found to be the main areas of recharge in the uplands. Recharge was also found to occur in the highly permeable areas of the sandplains. Discharge was shown to be primarily along the main drainage lines, on the edge of the circular sandplains, in depressions and in lakes. The groundwater occurrence and hydrogeological classification of the recharge potential of the different units were used to classify the mapped areas into recharge and discharge zones. The results also show that TM colour composites provide a viable source of data comparable with AP for mapping and delineating areas of recharge and discharge on a regional scale.

Acquired bilateral telangiectatic macules: a distinct clinical entity.

PubMed

Park, Ji-Hye; Lee, Dong Jun; Lee, Yoo-Jung; Jang, Yong Hyun; Kang, Hee Young; Kim, You Chan

2014-09-01

We evaluated 13 distinct patients with multiple telangiectatic pigmented macules confined mostly to the upper arms to determine if the clinical and histopathological features of these cases might represent a specific clinical entity. We retrospectively investigated the clinical, histopathologic, and immunohistochemical features of 13 patients with multiple telangiectatic pigmented macules on the upper arms who presented between January 2003 and December 2012. Epidermal pigmentation, melanogenic activity, melanocyte number, vascularity, epidermal thickness, and perivascular mast cell number of the specimens were evaluated. Clinically, the condition favored middle-aged men. On histopathologic examination, the lesional skin showed capillary proliferation and telangiectasia in the upper dermis. Histochemical and immunohistochemical analysis revealed basal hyperpigmentation and increased melanogenic activity in the lesional skin (P < .05). No significant difference in epidermal thickness or mast cell number was observed between the normal perilesional skin and the lesional skin. The clinical and histopathologic features of these lesions were relatively consistent in all patients. In addition, the features are quite distinct from other diseases. Based on clinical and histologic features, we suggest the name acquired bilateral telangiectatic macules for this new entity.

A Sequence-Specific Nicking Endonuclease from Streptomyces: Purification, Physical and Catalytic Properties

PubMed Central

Somyoonsap, Peechapack; Kitpreechavanich, Vichein

2013-01-01

A sequence-specific nicking endonuclease from Streptomyces designated as DC13 was purified to near homogeneity. Starting with 30 grams of wet cells, the enzyme was purified by ammonium sulfate fractionation, DEAE cellulose, and phenyl-Sepharose chromatography. The purified protein had a specific activity 1000 units/mg and migrated on SDS-PAGE gel with an estimated molecular weight of 71 kDa. Determination of subunit composition by gel filtration chromatography indicated that the native enzyme is a monomer. When incubated with different DNA substrates including pBluescript II KS, pUC118, pET-15b, and pET-26b, the enzyme converted these supercoiled plasmids to a mixture of open circular and linear DNA products, with the open circular DNA as the major cleavage product. Analysis of the kinetic of DNA cleavage showed that the enzyme appeared to cleave super-coiled plasmid in two distinct steps: a rapid cleavage of super-coiled plasmid to an open circular DNA followed a much slower step to linear DNA. The DNA cleavage reaction of the enzyme required Mg2+ as a cofactor. Based on the monomeric nature of the enzyme, the kinetics of DNA cleavage exhibited by the enzyme, and cofactor requirement, it is suggested here that the purified enzyme is a sequence-specific nicking endonuclease that is similar to type IIS restriction endonuclease. PMID:25937959

Improved moving source photometry with TRIPPy

NASA Astrophysics Data System (ADS)

Alexandersen, Mike; Fraser, Wesley Cristopher

2017-10-01

Photometry of moving sources is more complicated than for stationary sources, because the sources trail their signal out over more pixels than a point source of the same magnitude. Using a circular aperture of same size as would be appropriate for point sources can cut out a large amount of flux if a moving source moves substantially relative to the size of the aperture during the exposure, resulting in underestimated fluxes. Using a large circular aperture can mitigate this issue at the cost of a significantly reduced signal to noise compared to a point source, as a result of the inclusion of a larger background region within the aperture.Trailed Image Photometry in Python (TRIPPy) solves this problem by using a pill-shaped aperture: the traditional circular aperture is sliced in half perpendicular to the direction of motion and separated by a rectangle as long as the total motion of the source during the exposure. TRIPPy can also calculate the appropriate aperture correction (which will depend both on the radius and trail length of the pill-shaped aperture), and has features for selecting good PSF stars, creating a PSF model (convolved moffat profile + lookup table) and selecting a custom sky-background area in order to ensure no other sources contribute to the background estimate.In this poster, we present an overview of the TRIPPy features and demonstrate the improvements resulting from using TRIPPy compared to photometry obtained by other methods with examples from real projects where TRIPPy has been implemented in order to obtain the best-possible photometric measurements of Solar System objects. While TRIPPy has currently mainly been used for Trans-Neptunian Objects, the improvement from using the pill-shaped aperture increases with source motion, making TRIPPy highly relevant for asteroid and centaur photometry as well.

Predicting the Metabolic Sites by Flavin-Containing Monooxygenase on Drug Molecules Using SVM Classification on Computed Quantum Mechanics and Circular Fingerprints Molecular Descriptors

PubMed Central

Fu, Chien-wei; Lin, Thy-Hou

2017-01-01

As an important enzyme in Phase I drug metabolism, the flavin-containing monooxygenase (FMO) also metabolizes some xenobiotics with soft nucleophiles. The site of metabolism (SOM) on a molecule is the site where the metabolic reaction is exerted by an enzyme. Accurate prediction of SOMs on drug molecules will assist the search for drug leads during the optimization process. Here, some quantum mechanics features such as the condensed Fukui function and attributes from circular fingerprints (called Molprint2D) are computed and classified using the support vector machine (SVM) for predicting some potential SOMs on a series of drugs that can be metabolized by FMO enzymes. The condensed Fukui function fA− representing the nucleophilicity of central atom A and the attributes from circular fingerprints accounting the influence of neighbors on the central atom. The total number of FMO substrates and non-substrates collected in the study is 85 and they are equally divided into the training and test sets with each carrying roughly the same number of potential SOMs. However, only N-oxidation and S-oxidation features were considered in the prediction since the available C-oxidation data was scarce. In the training process, the LibSVM package of WEKA package and the option of 10-fold cross validation are employed. The prediction performance on the test set evaluated by accuracy, Matthews correlation coefficient and area under ROC curve computed are 0.829, 0.659, and 0.877 respectively. This work reveals that the SVM model built can accurately predict the potential SOMs for drug molecules that are metabolizable by the FMO enzymes. PMID:28072829

Possible pingos and a periglacial landscape in northwest Utopia Planitia

USGS Publications Warehouse

Soare, R.J.; Burr, D.M.; Wan, Bun Tseung J.-M.

2005-01-01

Hydrostatic (closed-system) pingos are small, elongate to circular, ice-cored mounds that are perennial features of some periglacial landscapes. The growth and development of hydrostatic pingos is contingent upon the presence of surface water, freezing processes and of deep, continuous, ice-cemented permafrost. Other cold-climate landforms such as small-sized, polygonal patterned ground also may occur in the areas where pingos are found. On Mars, landscapes comprising small, elongate to circular mounds and other possible periglacial features have been identified in various areas, including Utopia Planitia, where water is thought to have played an important role in landscape evolution. Despite the importance of the martian mounds as possible markers of water, most accounts of them in the planetary science literature have been brief and/or based upon Viking imagery. We use a high-resolution Mars Orbiter Camera image (EO300299) and superposed Mars Orbiter Laser Altimeter data tracks to describe and characterise a crater-floor landscape in northwest Utopia Planitia (64.8?? N/292.7?? W). The landscape comprises an assemblage of landforms that is consistent with the past presence of water and of periglacial processes. This geomorphological assemblage may have formed as recently as the last episode of high obliquity. A similar assemblage of landforms is found in the Tuktoyaktuk peninsula of northern Canada and other terrestrial cold-climate landscapes. We point to the similarity of the two assemblages and suggest that the small, roughly circular mounds on the floor of the impact crater in northwest Utopia Planitia are hydrostatic pingos. Like the hydrostatic pingos of the Tuktoyaktuk peninsula, the origin of the crater-floor mounds could be tied to the loss of ponded, local water, permafrost aggradation and the evolution of a sub-surface ice core. ?? 2004 Elsevier Inc. All rights reserved.

PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates.

PubMed

Mavridis, Lazaros; Janes, Robert W

2017-01-01

Circular dichroism (CD) spectroscopy is extensively utilized for determining the percentages of secondary structure content present in proteins. However, although a large contributor, secondary structure is not the only factor that influences the shape and magnitude of the CD spectrum produced. Other structural features can make contributions so an entire protein structural conformation can give rise to a CD spectrum. There is a need for an application capable of generating protein CD spectra from atomic coordinates. However, no empirically derived method to do this currently exists. PDB2CD has been created as an empirical-based approach to the generation of protein CD spectra from atomic coordinates. The method utilizes a combination of structural features within the conformation of a protein; not only its percentage secondary structure content, but also the juxtaposition of these structural components relative to one another, and the overall structure similarity of the query protein to proteins in our dataset, the SP175 dataset, the 'gold standard' set obtained from the Protein Circular Dichroism Data Bank (PCDDB). A significant number of the CD spectra associated with the 71 proteins in this dataset have been produced with excellent accuracy using a leave-one-out cross-validation process. The method also creates spectra in good agreement with those of a test set of 14 proteins from the PCDDB. The PDB2CD package provides a web-based, user friendly approach to enable researchers to produce CD spectra from protein atomic coordinates. http://pdb2cd.cryst.bbk.ac.uk CONTACT: r.w.janes@qmul.ac.ukSupplementary information: Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

Vibrational and chiroptical spectroscopic characterization of gamma-turn model cyclic tetrapeptides containing two beta-Ala residues.

PubMed

Vass, Elemér; Majer, Zsuzsa; Kohalmy, Krisztina; Hollósi, Miklós

2010-08-01

The optical spectroscopic characterization of gamma-turns in solution is uncertain and their distinction from beta-turns is often difficult. This work reports systematic ECD and vibrational circular dichroism (VCD) spectroscopic studies on gamma-turn model cyclic tetrapeptides cyclo(Ala-beta-Ala-Pro-beta-Ala) (1), cyclo(Pro-beta-Ala-Pro-beta-Ala) (2) and cyclo(Ala-beta-Ala-Ala-beta-Ala) (3). Conformational analysis performed at the 6-31G(d)/B3LYP level of theory using an adequate PCM solvent model predicted one predominant conformer for 1-3, featuring two inverse gamma-turns. The ECD spectra in ACN of 1 and 2 are characterized by a negative n-->pi* band near 230 nm and a positive pi-->pi* band below 200 nm with a long wavelength shoulder. The ECD spectra in TFE of 1-3 show similar spectra with blue-shifted bands. The VCD spectra in ACN-d(3) of 1 and 2 show a +/-/+/- amide I sign pattern resulting from four uncoupled vibrations in the case of 1 and a sequence of two positive couplets in the case of 2. A -/+/+/- amide I VCD pattern was measured for 3 in TFE-d(2). All three peptides give a positive couplet or couplet-like feature (+/-) in the amide II region. VCD spectroscopy, in agreement with theoretical calculations revealed that low frequency amide I vibrations (at approximately 1630 cm(-1) or below) are indicative of a C(7) H-bonded inverse gamma-turns with Pro in position 2, while gamma-turns encompassing Ala absorb at higher frequency (above 1645 cm(-1)). Copyright 2010 Wiley-Liss, Inc.

Ultrastructural and molecular confirmation of the development of Sarcocystis neurona tissue cysts in the central nervous system of southern sea otters (Enhydra lutris nereis).

PubMed

Miller, M A; Barr, B C; Nordhausen, R; James, E R; Magargal, S L; Murray, M; Conrad, P A; Toy-Choutka, S; Jessup, D A; Grigg, M E

2009-10-01

In 2004, three wild sea otters were diagnosed with putative Sarcocystis neurona-associated meningoencephalitis by histopathology and immunohistochemistry. Schizonts, free merozoites and tissue cysts were observed in the brains of all three infected animals. Tissue cysts walls from sea otter 1 (SO1) stained positively using anti-S. neurona polyclonal antiserum. However, positive staining does not preclude infection by closely related or cross-reactive tissue cyst-forming coccidian parasites. Two immature tissue cysts in the brain of SO1 were examined using transmission electron microscopy. Ultrastructural features included cyst walls with thin villous projections up to 1 microm long with tapered ends and a distinctive, electron-dense outer lining layer composed of linearly-arranged, semi-circular structures with a "hobnailed" surface contour. Small numbers of microtubules extended down through the villi into the underlying granular layer. Metrocytes were short and plump with an anterior apical complex, 22 sub-pellicular microtubules, numerous free ribosomes and no rhoptries. Some metrocytes appeared to be dividing, with two adjacent nuclear profiles. Collectively these ultrastructural features were compatible with developing protozoal cysts and were similar to prior descriptions of S. neurona tissue cysts. Panspecific 18S rDNA primers were utilized to identify protozoa infecting the brains of these otters and DNA amplification and additional sequencing at the ITS1 locus confirmed that all three otters were infected with S. neurona. No other Sarcocystis spp. were detected in the brains or skeletal muscles of these animals by immunohistochemistry or PCR. We believe this is the first ultrastructural and molecular confirmation of the development of S. neurona tissue cysts in the CNS of any animal.

Ultrastructural and molecular confirmation of the development of Sarcocystis neurona tissue cysts in the central nervous system of southern sea otters (Enhydra lutris nereis)

PubMed Central

Miller, M.A.; Barr, B.C.; Nordhausen, R.; James, E.R.; Magargal, S.L.; Murray, M.; Conrad, P.A.; Toy-Choutka, S.; Jessup, D.A.; Grigg, M.E.

2009-01-01

In 2004, three wild sea otters were diagnosed with putative Sarcocystis neurona-associated meningoencephalitis by histopathology and immunohistochemistry. Schizonts, free merozoites and tissue cysts were observed in the brains of all three infected animals. Tissue cysts from sea otter 1 (SO1) stained positively using anti-S. neurona polyclonal antiserum. However, positive staining does not preclude infection by closely related or cross-reactive tissue cyst-forming coccidian parasites. Two immature tissue cysts in the brain of SO1 were examined using transmission electron microscopy. Ultrastructural features included cyst walls with thin villous projections up to 1 μm long with tapered ends and a distinctive, electron-dense outer lining layer composed of linearly-arranged, semi-circular structures with a “hobnailed” surface contour. Small numbers of microtubules extended down through the villi into the underlying granular layer. Metrocytes were short and plump with an anterior apical complex, 22 subpellicular microtubules, numerous free ribosomes and no rhoptries. Some metrocytes appeared to be dividing, with two adjacent nuclear profiles. Collectively these ultrastructural features were compatible with developing protozoal cysts and were similar to prior descriptions of S. neurona tissue cysts. Panspecific 18S rDNA primers were utilized to identify protozoa infecting the brains of these otters and DNA amplification and additional sequencing at the ITS1 locus confirmed that all three otters were infected with S. neurona. No other Sarcocystis spp. were detected in the brains or skeletal muscles of these animals by immunohistochemistry or PCR. We believe this is the first ultrastructural and molecular confirmation of the development of S. neurona tissue cysts in the CNS of any animal. PMID:19527725

X-ray Characterization of Oxide-based Magnetic Semiconductors

NASA Astrophysics Data System (ADS)

Idzerda, Yves

2008-05-01

Although the evidence for magnetic semiconductors (not simply semiconductors which are ferromagnetic) is compelling, there is much uncertainty in the mechanism for the polarization of the carriers, suggesting that it must be quite novel. Recent experimental evidence suggests that this mechanism is similar to the polaron percolation theory proposed by Kaminski and Das Sarma,ootnotetextKaminski and S. Das Sarma, Physical Review Letters 88, 247202 (2002). which was recently applied specifically to doped oxides by Coey et al.ootnotetextJ. M. D. Coey, M. Venkatesan, and C. B. Fitzgerald, Nature Materials 4, 173 (2005). where the ferromagnetism is driven by the percolation of polarons generated by defects or dopants. We have used X-ray absorption spectroscopy at the L-edges and K-edges for low concentrations transition metal (TM) doped magnetic oxides (including TiO2, La1-xSrxO3, HfO2, and In2O3). We have found that in most cases, the transition metal assumes a valence consistent with being at a substitutional, and not interstitial site. We have also measured the X-ray Magnetic Circular Dichroism spectra. Although these materials show strong bulk magnetization, we are unable to detect a robust dichroism feature associated with magnetic elements in the host semiconductor. In the cases where a dichroism signal was observed, it was very weak and could be ascribed to a distinct ferromagnetic phase (TM metal cluster, TM oxide particulate, etc.) separate from the host material. This fascinating absence of a dichroic signal and its significant substantiation of important features of the polaron percolation model may help to finally resolve the issue of ferromagnetism in magnetically doped oxides.

Computed Tomographic Distinction of Intimal and Medial Calcification in the Intracranial Internal Carotid Artery.

PubMed

Kockelkoren, Remko; Vos, Annelotte; Van Hecke, Wim; Vink, Aryan; Bleys, Ronald L A W; Verdoorn, Daphne; Mali, Willem P Th M; Hendrikse, Jeroen; Koek, Huiberdina L; de Jong, Pim A; De Vis, Jill B

2017-01-01

Intracranial internal carotid artery (iICA) calcification is associated with stroke and is often seen as a proxy of atherosclerosis of the intima. However, it was recently shown that these calcifications are predominantly located in the tunica media and internal elastic lamina (medial calcification). Intimal and medial calcifications are thought to have a different pathogenesis and clinical consequences and can only be distinguished through ex vivo histological analysis. Therefore, our aim was to develop CT scoring method to distinguish intimal and medial iICA calcification in vivo. First, in both iICAs of 16 cerebral autopsy patients the intimal and/or medial calcification area was histologically assessed (142 slides). Brain CT images of these patients were matched to the corresponding histological slides to develop a CT score that determines intimal or medial calcification dominance. Second, performance of the CT score was assessed in these 16 patients. Third, reproducibility was tested in a separate cohort. First, CT features of the score were circularity (absent, dot(s), <90°, 90-270° or 270-360°), thickness (absent, ≥1.5mm, or <1.5mm), and morphology (indistinguishable, irregular/patchy or continuous). A high sum of features represented medial and a lower sum intimal calcifications. Second, in the 16 patients the concordance between the CT score and the dominant calcification type was reasonable. Third, the score showed good reproducibility (kappa: 0.72 proportion of agreement: 0.82) between the categories intimal, medial or absent/indistinguishable. The developed CT score shows good reproducibility and can differentiate reasonably well between intimal and medial calcification dominance in the iICA, allowing for further (epidemiological) studies on iICA calcification.

Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes.

PubMed

Anantharaman, Vivek; Aravind, L

2003-01-01

Peptidoglycan is hydrolyzed by a diverse set of enzymes during bacterial growth, development and cell division. The N1pC/P60 proteins define a family of cell-wall peptidases that are widely represented in various bacterial lineages. Currently characterized members are known to hydrolyze D-gamma-glutamyl-meso-diaminopimelate or N-acetylmuramate-L-alanine linkages. Detailed analysis of the N1pC/P60 peptidases showed that these proteins define a large superfamily encompassing several diverse groups of proteins. In addition to the well characterized P60-like proteins, this superfamily includes the AcmB/LytN and YaeF/YiiX families of bacterial proteins, the amidase domain of bacterial and kinetoplastid glutathionylspermidine synthases (GSPSs), and several proteins from eukaryotes, phages, poxviruses, positive-strand RNA viruses, and certain archaea. The eukaryotic members include lecithin retinol acyltransferase (LRAT), nematode developmental regulator Egl-26, and candidate tumor suppressor H-rev107. These eukaryotic proteins, along with the bacterial YaeF/poxviral G6R family, show a circular permutation of the catalytic domain. We identified three conserved residues, namely a cysteine, a histidine and a polar residue, that are involved in the catalytic activities of this superfamily. Evolutionary analysis of this superfamily shows that it comprises four major families, with diverse domain architectures in each of them. Several related, but distinct, catalytic activities, such as murein degradation, acyl transfer and amide hydrolysis, have emerged in the N1pC/P60 superfamily. The three conserved catalytic residues of this superfamily are shown to be equivalent to the catalytic triad of the papain-like thiol peptidases. The predicted structural features indicate that the N1pC/P60 enzymes contain a fold similar to the papain-like peptidases, transglutaminases and arylamine acetyltransferases.

Mitochondrial Genomes of Kinorhyncha: trnM Duplication and New Gene Orders within Animals.

PubMed

Popova, Olga V; Mikhailov, Kirill V; Nikitin, Mikhail A; Logacheva, Maria D; Penin, Aleksey A; Muntyan, Maria S; Kedrova, Olga S; Petrov, Nikolai B; Panchin, Yuri V; Aleoshin, Vladimir V

2016-01-01

Many features of mitochondrial genomes of animals, such as patterns of gene arrangement, nucleotide content and substitution rate variation are extensively used in evolutionary and phylogenetic studies. Nearly 6,000 mitochondrial genomes of animals have already been sequenced, covering the majority of animal phyla. One of the groups that escaped mitogenome sequencing is phylum Kinorhyncha-an isolated taxon of microscopic worm-like ecdysozoans. The kinorhynchs are thought to be one of the early-branching lineages of Ecdysozoa, and their mitochondrial genomes may be important for resolving evolutionary relations between major animal taxa. Here we present the results of sequencing and analysis of mitochondrial genomes from two members of Kinorhyncha, Echinoderes svetlanae (Cyclorhagida) and Pycnophyes kielensis (Allomalorhagida). Their mitochondrial genomes are circular molecules approximately 15 Kbp in size. The kinorhynch mitochondrial gene sequences are highly divergent, which precludes accurate phylogenetic inference. The mitogenomes of both species encode a typical metazoan complement of 37 genes, which are all positioned on the major strand, but the gene order is distinct and unique among Ecdysozoa or animals as a whole. We predict four types of start codons for protein-coding genes in E. svetlanae and five in P. kielensis with a consensus DTD in single letter code. The mitochondrial genomes of E. svetlanae and P. kielensis encode duplicated methionine tRNA genes that display compensatory nucleotide substitutions. Two distant species of Kinorhyncha demonstrate similar patterns of gene arrangements in their mitogenomes. Both genomes have duplicated methionine tRNA genes; the duplication predates the divergence of two species. The kinorhynchs share a few features pertaining to gene order that align them with Priapulida. Gene order analysis reveals that gene arrangement specific of Priapulida may be ancestral for Scalidophora, Ecdysozoa, and even Protostomia.

Mitochondrial Genomes of Kinorhyncha: trnM Duplication and New Gene Orders within Animals

PubMed Central

Popova, Olga V.; Mikhailov, Kirill V.; Nikitin, Mikhail A.; Logacheva, Maria D.; Penin, Aleksey A.; Muntyan, Maria S.; Kedrova, Olga S.; Petrov, Nikolai B.; Panchin, Yuri V.

2016-01-01

Many features of mitochondrial genomes of animals, such as patterns of gene arrangement, nucleotide content and substitution rate variation are extensively used in evolutionary and phylogenetic studies. Nearly 6,000 mitochondrial genomes of animals have already been sequenced, covering the majority of animal phyla. One of the groups that escaped mitogenome sequencing is phylum Kinorhyncha—an isolated taxon of microscopic worm-like ecdysozoans. The kinorhynchs are thought to be one of the early-branching lineages of Ecdysozoa, and their mitochondrial genomes may be important for resolving evolutionary relations between major animal taxa. Here we present the results of sequencing and analysis of mitochondrial genomes from two members of Kinorhyncha, Echinoderes svetlanae (Cyclorhagida) and Pycnophyes kielensis (Allomalorhagida). Their mitochondrial genomes are circular molecules approximately 15 Kbp in size. The kinorhynch mitochondrial gene sequences are highly divergent, which precludes accurate phylogenetic inference. The mitogenomes of both species encode a typical metazoan complement of 37 genes, which are all positioned on the major strand, but the gene order is distinct and unique among Ecdysozoa or animals as a whole. We predict four types of start codons for protein-coding genes in E. svetlanae and five in P. kielensis with a consensus DTD in single letter code. The mitochondrial genomes of E. svetlanae and P. kielensis encode duplicated methionine tRNA genes that display compensatory nucleotide substitutions. Two distant species of Kinorhyncha demonstrate similar patterns of gene arrangements in their mitogenomes. Both genomes have duplicated methionine tRNA genes; the duplication predates the divergence of two species. The kinorhynchs share a few features pertaining to gene order that align them with Priapulida. Gene order analysis reveals that gene arrangement specific of Priapulida may be ancestral for Scalidophora, Ecdysozoa, and even Protostomia. PMID:27755612

Chirality sensing with stereodynamic biphenolate zinc complexes.

PubMed

Bentley, Keith W; de Los Santos, Zeus A; Weiss, Mary J; Wolf, Christian

2015-10-01

Two bidentate ligands consisting of a fluxional polyarylacetylene framework with terminal phenol groups were synthesized. Reaction with diethylzinc gives stereodynamic complexes that undergo distinct asymmetric transformation of the first kind upon binding of chiral amines and amino alcohols. The substrate-to-ligand chirality imprinting at the zinc coordination sphere results in characteristic circular dichroism signals that can be used for direct enantiomeric excess (ee) analysis. This chemosensing approach bears potential for high-throughput ee screening with small sample amounts and reduced solvent waste compared to traditional high-performance liquid chromatography methods. © 2015 Wiley Periodicals, Inc.

Novel Aminoglycoside Resistance Transposons and Transposon-Derived Circular Forms Detected in Carbapenem-Resistant Acinetobacter baumannii Clinical Isolates

PubMed Central

Dwibedi, Chinmay Kumar; Sjöström, Karin; Edquist, Petra; Wai, Sun Nyunt; Uhlin, Bernt Eric

2016-01-01

Acinetobacter baumannii has emerged as an important opportunistic pathogen equipped with a growing number of antibiotic resistance genes. Our study investigated the molecular epidemiology and antibiotic resistance features of 28 consecutive carbapenem-resistant clinical isolates of A. baumannii collected throughout Sweden in 2012 and 2013. The isolates mainly belonged to clonal complexes (CCs) with an extensive international distribution, such as CC2 (n = 16) and CC25 (n = 7). Resistance to carbapenems was related to blaOXA-23 (20 isolates), blaOXA-24/40-like (6 isolates), blaOXA-467 (1 isolate), and ISAba1-blaOXA-69 (1 isolate). Ceftazidime resistance was associated with blaPER-7 in the CC25 isolates. Two classical point mutations were responsible for resistance to quinolones in all the isolates. Isolates with high levels of resistance to aminoglycosides carried the 16S rRNA methylase armA gene. The isolates also carried a variety of genes encoding aminoglycoside-modifying enzymes. Several novel structures involved in aminoglycoside resistance were identified, including Tn6279, ΔTn6279, Ab-ST3-aadB, and different assemblies of Tn6020 and TnaphA6. Importantly, a number of circular forms related to the IS26 or ISAba125 composite transposons were detected. The frequent occurrence of these circular forms in the populations of several isolates indicates a potential role of these circular forms in the dissemination of antibiotic resistance genes. PMID:26824943

Multiresolution pattern recognition of small volcanos in Magellan data

NASA Technical Reports Server (NTRS)

Smyth, P.; Anderson, C. H.; Aubele, J. C.; Crumpler, L. S.

1992-01-01

The Magellan data is a treasure-trove for scientific analysis of venusian geology, providing far more detail than was previously available from Pioneer Venus, Venera 15/16, or ground-based radar observations. However, at this point, planetary scientists are being overwhelmed by the sheer quantities of data collected--data analysis technology has not kept pace with our ability to collect and store it. In particular, 'small-shield' volcanos (less than 20 km in diameter) are the most abundant visible geologic feature on the planet. It is estimated, based on extrapolating from previous studies and knowledge of the underlying geologic processes, that there should be on the order of 10(exp 5) to 10(exp 6) of these volcanos visible in the Magellan data. Identifying and studying these volcanos is fundamental to a proper understanding of the geologic evolution of Venus. However, locating and parameterizing them in a manual manner is very time-consuming. Hence, we have undertaken the development of techniques to partially automate this task. The goal is not the unrealistic one of total automation, but rather the development of a useful tool to aid the project scientists. The primary constraints for this particular problem are as follows: (1) the method must be reasonably robust; and (2) the method must be reasonably fast. Unlike most geological features, the small volcanos of Venus can be ascribed to a basic process that produces features with a short list of readily defined characteristics differing significantly from other surface features on Venus. For pattern recognition purposes the relevant criteria include the following: (1) a circular planimetric outline; (2) known diameter frequency distribution from preliminary studies; (3) a limited number of basic morphological shapes; and (4) the common occurrence of a single, circular summit pit at the center of the edifice.

Features of the normal choriocapillaris with OCT-angiography: Density estimation and textural properties.

PubMed

Montesano, Giovanni; Allegrini, Davide; Colombo, Leonardo; Rossetti, Luca M; Pece, Alfredo

2017-01-01

The main objective of our work is to perform an in depth analysis of the structural features of normal choriocapillaris imaged with OCT Angiography. Specifically, we provide an optimal radius for a circular Region of Interest (ROI) to obtain a stable estimate of the subfoveal choriocapillaris density and characterize its textural properties using Markov Random Fields. On each binarized image of the choriocapillaris OCT Angiography we performed simulated measurements of the subfoveal choriocapillaris densities with circular Regions of Interest (ROIs) of different radii and with small random displacements from the center of the Foveal Avascular Zone (FAZ). We then calculated the variability of the density measure with different ROI radii. We then characterized the textural features of choriocapillaris binary images by estimating the parameters of an Ising model. For each image we calculated the Optimal Radius (OR) as the minimum ROI radius required to obtain a standard deviation in the simulation below 0.01. The density measured with the individual OR was 0.52 ± 0.07 (mean ± STD). Similar density values (0.51 ± 0.07) were obtained using a fixed ROI radius of 450 μm. The Ising model yielded two parameter estimates (β = 0.34 ± 0.03; γ = 0.003 ± 0.012; mean ± STD), characterizing pixel clustering and white pixel density respectively. Using the estimated parameters to synthetize new random textures via simulation we obtained a good reproduction of the original choriocapillaris structural features and density. In conclusion, we developed an extensive characterization of the normal subfoveal choriocapillaris that might be used for flow analysis and applied to the investigation pathological alterations.

Circularly polarized light to study linear magneto-optics for ferrofluids: θ-scan technique

NASA Astrophysics Data System (ADS)

Meng, Xiangshen; Huang, Yan; He, Zhenghong; Lin, Yueqiang; Liu, Xiaodong; Li, Decai; Li, Jian; Qiu, Xiaoyan

2018-06-01

Circularly polarized light can be divided into two vertically linearly polarized light beams with  ±π/2 phase differences. In the presence of an external magnetic field, when circularly polarized light travels through a ferrofluid film, whose thickness is no more than that of λ/4 plate, magneto-optical, magnetic birefringence and dichroism effects cause the transmitted light to behave as elliptically polarized light. Using angular scan by a continuously rotating polarizer as analyzer, the angular (θ) distribution curve of relative intensity (T) corresponding to elliptically polarized light can be measured. From the T  ‑  θ curve having ellipsometry, the parameters such as the ratio of short to long axis, and angular orientation of the long axis to the vertical field direction can be obtained. Thus, magnetic birefringence and dichroism can be probed simultaneously by measuring magneto-optical, positive or negative birefringence and dichroism features from the transmission mode. The proposed method is called θ-scan technique, and can accurately determine sample stability, magnetic field direction, and cancel intrinsic light source ellipticity. This study may be helpful to further research done to ferrofluids and other similar colloidal samples with anisotropic optics.

Flux-focusing eddy current probe and rotating probe method for flaw detection

NASA Astrophysics Data System (ADS)

Wincheski, Buzz A.; Fulton, James P.; Nath, Shridhar C.; Simpson, John W.; Namkung, Min

1994-11-01

A flux-focusing electromagnetic sensor which uses a ferromagnetic flux-focusing lens simplifies inspections and increases detectability of fatigue cracks about circular fasteners and other circular inhomogeneities in high conductivity material. The unique feature of the device is the ferrous shield isolating a high-turn pick-up coil from an excitation coil. The use of the magnetic shield is shown to produce a null voltage output across the receiving coil in the presence of an unflawed sample. A redistribution of the current flow in the sample caused by the presence of flaws, however, eliminates the shielding condition and a large output voltage is produced, yielding a clear unambiguous flaw signal. By rotating the probe in a path around a circular fastener such as a rivet while maintaining a constant distance between the probe and the center of a rivet, the signal due to current flow about the rivet can be held constant. Any further changes in the current distribution, such as due to a fatigue crack at the rivet joint, can be detected as an increase in the output voltage above that due to the flow about the rivet head.

Chiroptical methods in a wide wavelength range for obtaining Ln3+ complexes with circularly polarized luminescence of practical interest.

PubMed

Górecki, Marcin; Carpita, Luca; Arrico, Lorenzo; Zinna, Francesco; Di Bari, Lorenzo

2018-05-29

We studied enantiopure chiral trivalent lanthanide (Ln3+ = La3+, Sm3+, Eu3+, Gd3+, Tm3+, and Yb3+) complexes with two fluorinated achiral tris(β-diketonate) ligands (HFA = hexafluoroacetylacetonate and TTA = 2-thenoyltrifluoroacetonate), incorporating a chiral bis(oxazolinyl)pyridine (PyBox) unit as a neutral ancillary ligand, by the combined use of optical and chiroptical methods, ranging from UV to IR both in absorption and circular dichroism (CD), and including circularly polarized luminescence (CPL). Ultimately, all the spectroscopic information is integrated into a total and a chiroptical super-spectrum, which allows one to characterize a multidimensional chemical space, spanned by the different Ln3+ ions, the acidity and steric demand of the diketone and the chirality of the PyBox ligand. In all cases, the Ln3+ ions endow the systems with peculiar chiroptical properties, either allied to f-f transitions or induced by the metal onto the ligand. In more detail, we found that Sm3+ complexes display interesting CPL features, which partly superimpose and partly integrate the more common Eu3+ properties. Especially, in the context of security tags, the pair Sm/Eu may be a winning choice for chiroptical barcoding.

Flux-focusing eddy current probe and rotating probe method for flaw detection

NASA Technical Reports Server (NTRS)

Wincheski, Buzz A. (Inventor); Fulton, James P. (Inventor); Nath, Shridhar C. (Inventor); Simpson, John W. (Inventor); Namkung, Min (Inventor)

1994-01-01

A flux-focusing electromagnetic sensor which uses a ferromagnetic flux-focusing lens simplifies inspections and increases detectability of fatigue cracks about circular fasteners and other circular inhomogeneities in high conductivity material. The unique feature of the device is the ferrous shield isolating a high-turn pick-up coil from an excitation coil. The use of the magnetic shield is shown to produce a null voltage output across the receiving coil in the presence of an unflawed sample. A redistribution of the current flow in the sample caused by the presence of flaws, however, eliminates the shielding condition and a large output voltage is produced, yielding a clear unambiguous flaw signal. By rotating the probe in a path around a circular fastener such as a rivet while maintaining a constant distance between the probe and the center of a rivet, the signal due to current flow about the rivet can be held constant. Any further changes in the current distribution, such as due to a fatigue crack at the rivet joint, can be detected as an increase in the output voltage above that due to the flow about the rivet head.

Knowing where is different from knowing what: Distinct response time profiles and accuracy effects for target location, orientation, and color probability.

PubMed

Jabar, Syaheed B; Filipowicz, Alex; Anderson, Britt

2017-11-01

When a location is cued, targets appearing at that location are detected more quickly. When a target feature is cued, targets bearing that feature are detected more quickly. These attentional cueing effects are only superficially similar. More detailed analyses find distinct temporal and accuracy profiles for the two different types of cues. This pattern parallels work with probability manipulations, where both feature and spatial probability are known to affect detection accuracy and reaction times. However, little has been done by way of comparing these effects. Are probability manipulations on space and features distinct? In a series of five experiments, we systematically varied spatial probability and feature probability along two dimensions (orientation or color). In addition, we decomposed response times into initiation and movement components. Targets appearing at the probable location were reported more quickly and more accurately regardless of whether the report was based on orientation or color. On the other hand, when either color probability or orientation probability was manipulated, response time and accuracy improvements were specific for that probable feature dimension. Decomposition of the response time benefits demonstrated that spatial probability only affected initiation times, whereas manipulations of feature probability affected both initiation and movement times. As detection was made more difficult, the two effects further diverged, with spatial probability disproportionally affecting initiation times and feature probability disproportionately affecting accuracy. In conclusion, all manipulations of probability, whether spatial or featural, affect detection. However, only feature probability affects perceptual precision, and precision effects are specific to the probable attribute.

Circular RNAs: Regulators of Cancer-Related Signaling Pathways and Potential Diagnostic Biomarkers for Human Cancers

PubMed Central

Yang, Zuozhang; Xie, Lin; Han, Lei; Qu, Xin; Yang, Yihao; Zhang, Ya; He, Zewei; Wang, Yu; Li, Jing

2017-01-01

Circular RNAs (circRNAs) are newly discovered endogenous non-coding RNAs featuring structural stability, high abundance, and tissue-specific expression. CircRNAs are prevalent and conserved in mammalian cells. They are involved in cellular processes and regulate gene expression at the transcriptional or post-transcriptional level by interacting with microRNAs (miRNAs) and other molecules. Recent studies have shown that circRNAs play an important role in the progression of various human diseases including atherosclerosis, nervous system disorders, diabetes, and cancer. In this review, we summarize the advances on endogenous circRNAs in eukaryotic cells and elucidate their diagnostic and prognostic significance in human cancers. Especially, we highlight the involvement of circRNAs in signal transduction pathways as well as their clinical potential to serve as biomarkers. PMID:28839467

A proposed origin of the Olympus Mons escarpment. [Martian volcanic feature

NASA Technical Reports Server (NTRS)

King, J. S.; Riehle, J. R.

1974-01-01

Olympus Mons (Nix Olympica) on Mars is delimited by a unique steep, nearly circular scarp. A pyroclastic model is proposed for the construct's origin. It is postulated that the Olympus Mons plateau is constructed predominantly of numerous ash-flow tuffs which were erupted from central sources over an extended period of time. Lava flows may be intercalated with the tuffs. A schematic radial profile incorporating the inferred compaction zones for an ash sheet is proposed. Following emplacement, eolian (and possibly fluvial) erosion and abrasion during dust storms would act on the ash sheets. Interior portions of the sheets would spall and slump following eolian erosion, generating steep, relatively smooth boundary scarps. The scarp would be circular due to symmetrical distribution of compaction zones. The model implies further that the Olympus Mons plateau rests on a more resistant rock substrate.

Three-dimensional perspective views of Venusian Terrains composed of reduced resolution left-looking synthetic-aperture radar images merged with altimetry data from the Magellan spacecraft.

NASA Image and Video Library

1998-06-03

The view from NASA's Magellan spacecraft shows part of Galindo V40 quadrangle looking north; Nagavonyi Corona is in the foreground. Coronae are roughly circular, volcanic features believed to form over hot upwellings of magma within the Venusian mantle. http://photojournal.jpl.nasa.gov/catalog/PIA00095

Comparative evaluation of Populus variants total sugar release and structural features following pretreatment and digestion by two distinct biological systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomas, Vanessa A.; Kothari, Ninad; Bhagia, Samarthya

Populus natural variants have been shown to realize a broad range of sugar yields during saccharification, however, the structural features responsible for higher sugar release from natural variants are not clear. In addition, the sugar release patterns resulting from digestion with two distinct biological systems, fungal enzymes and Clostridium thermocellum, have yet to be evaluated and compared. This study evaluates the effect of structural features of three natural variant Populus lines, which includes the line BESC standard, with respect to the overall process of sugar release for two different biological systems.

Comparative evaluation of Populus variants total sugar release and structural features following pretreatment and digestion by two distinct biological systems

DOE PAGES

Thomas, Vanessa A.; Kothari, Ninad; Bhagia, Samarthya; ...

2017-11-30

Populus natural variants have been shown to realize a broad range of sugar yields during saccharification, however, the structural features responsible for higher sugar release from natural variants are not clear. In addition, the sugar release patterns resulting from digestion with two distinct biological systems, fungal enzymes and Clostridium thermocellum, have yet to be evaluated and compared. This study evaluates the effect of structural features of three natural variant Populus lines, which includes the line BESC standard, with respect to the overall process of sugar release for two different biological systems.

Observational learning from a radical-behavioristic viewpoint

PubMed Central

Deguchi, Hikaru

1984-01-01

Bandura (1972, 1977b) has argued that observational learning has some distinctive features that set it apart from the operant paradigm: (1) acquisition simply through observation, (2) delayed performance through cognitive mediation, and (3) vicarious reinforcement. The present paper first redefines those three features at the descriptive level, and then adopts a radical-behavioristic viewpoint to show how those redefined distinctive features can be explained and tested experimentally. Finally, the origin of observational learning is discussed in terms of recent data of neonatal imitation. The present analysis offers a consistent theoretical and practical understanding of observational learning from a radical-behavioristic viewpoint. PMID:22478602

Binary information propagation in circular magnetic nanodot arrays using strain induced magnetic anisotropy

NASA Astrophysics Data System (ADS)

Salehi-Fashami, M.; Al-Rashid, M.; Sun, Wei-Yang; Nordeen, P.; Bandyopadhyay, S.; Chavez, A. C.; Carman, G. P.; Atulasimha, J.

2016-10-01

Nanomagnetic logic has emerged as a potential replacement for traditional Complementary Metal Oxide Semiconductor (CMOS) based logic because of superior energy-efficiency (Salahuddin and Datta 2007 Appl. Phys. Lett. 90 093503, Cowburn and Welland 2000 Science 287 1466-68). One implementation of nanomagnetic logic employs shape-anisotropic (e.g. elliptical) ferromagnets (with two stable magnetization orientations) as binary switches that rely on dipole-dipole interaction to communicate binary information (Cowburn and Welland 2000 Science 287 1466-8, Csaba et al 2002 IEEE Trans. Nanotechnol. 1 209-13, Carlton et al 2008 Nano Lett. 8 4173-8, Atulasimha and Bandyopadhyay 2010 Appl. Phys. Lett. 97 173105, Roy et al 2011 Appl. Phys. Lett. 99 063108, Fashami et al 2011 Nanotechnology 22 155201, Tiercelin et al 2011 Appl. Phys. Lett. 99 , Alam et al 2010 IEEE Trans. Nanotechnol. 9 348-51 and Bhowmik et al 2013 Nat. Nanotechnol. 9 59-63). Normally, circular nanomagnets are incompatible with this approach since they lack distinct stable in-plane magnetization orientations to encode bits. However, circular magnetoelastic nanomagnets can be made bi-stable with a voltage induced anisotropic strain, which provides two significant advantages for nanomagnetic logic applications. First, the shape-anisotropy energy barrier is eliminated which reduces the amount of energy required to reorient the magnetization. Second, the in-plane size can be reduced (˜20 nm) which was previously not possible due to thermal stability issues. In circular magnetoelastic nanomagnets, a voltage induced strain stabilizes the magnetization even at this size overcoming the thermal stability issue. In this paper, we analytically demonstrate the feasibility of a binary ‘logic wire’ implemented with an array of circular nanomagnets that are clocked with voltage-induced strain applied by an underlying piezoelectric substrate. This leads to an energy-efficient logic paradigm orders of magnitude superior to existing CMOS-based logic that is scalable to dimensions substantially smaller than those for existing nanomagnetic logic approaches. The analytical approach is validated with experimental measurements conducted on dipole coupled Nickel (Ni) nanodots fabricated on a PMN-PT (Lead Magnesium Niobate-Lead Titanate) sample.

Job loss, human capital job feature, and work condition job feature as distinct job insecurity constructs.

PubMed

Blau, Gary; Tatum, Donna Surges; McCoy, Keith; Dobria, Lidia; Ward-Cook, Kory

2004-01-01

The projected growth of new technologies, increasing use of automation, and continued consolidation of health-related services suggest that continued study of job insecurity is needed for health care professionals. Using a sample of 178 medical technologists over a 5-year period, this study's findings extend earlier work by Blau and Sharp (2000) and suggest that job loss insecurity, human capital job feature insecurity, and work condition job feature insecurity are related but distinct types of job insecurity. A seven-item measure of job loss insecurity, a four-item measure of human capital job feature insecurity, and a four-item measure of work condition job feature insecurity were analyzed. Confirmatory factor analysis using a more heterogeneous sample of 447 working adults supported this three-factor structure. Using correlation and path analysis, different significant relationships of antecedent variables and subsequent organizational withdrawal cognitions to these three types of job insecurity were found.

Multithreaded hybrid feature tracking for markerless augmented reality.

PubMed

Lee, Taehee; Höllerer, Tobias

2009-01-01

We describe a novel markerless camera tracking approach and user interaction methodology for augmented reality (AR) on unprepared tabletop environments. We propose a real-time system architecture that combines two types of feature tracking. Distinctive image features of the scene are detected and tracked frame-to-frame by computing optical flow. In order to achieve real-time performance, multiple operations are processed in a synchronized multi-threaded manner: capturing a video frame, tracking features using optical flow, detecting distinctive invariant features, and rendering an output frame. We also introduce user interaction methodology for establishing a global coordinate system and for placing virtual objects in the AR environment by tracking a user's outstretched hand and estimating a camera pose relative to it. We evaluate the speed and accuracy of our hybrid feature tracking approach, and demonstrate a proof-of-concept application for enabling AR in unprepared tabletop environments, using bare hands for interaction.

Development of Distinctive Feature Theory.

ERIC Educational Resources Information Center

Meyer, Peggy L.

Since the beginning of man's awareness of his language capabilities and language structure, he has assumed that speech is composed of discrete entities. The linguist attempts to establish a model of the workings of these distinctive sounds in a language. Utilizing an historical basis for discussion, this general survey of the distinctive feature…

Real-Time Detection and Measurement of Eye Features from Color Images

PubMed Central

Borza, Diana; Darabant, Adrian Sergiu; Danescu, Radu

2016-01-01

The accurate extraction and measurement of eye features is crucial to a variety of domains, including human-computer interaction, biometry, and medical research. This paper presents a fast and accurate method for extracting multiple features around the eyes: the center of the pupil, the iris radius, and the external shape of the eye. These features are extracted using a multistage algorithm. On the first stage the pupil center is localized using a fast circular symmetry detector and the iris radius is computed using radial gradient projections, and on the second stage the external shape of the eye (of the eyelids) is determined through a Monte Carlo sampling framework based on both color and shape information. Extensive experiments performed on a different dataset demonstrate the effectiveness of our approach. In addition, this work provides eye annotation data for a publicly-available database. PMID:27438838

Normal modes in an overmoded circular waveguide coated with lossy material

NASA Technical Reports Server (NTRS)

Lee, C. S.; Lee, S. W.; Chuang, S. L.

1985-01-01

The normal modes in an overmoded waveguide coated with a lossy material are analyzed, particularly for their attenuation properties as a function of coating material, layer thickness, and frequency. When the coating material is not too lossy, the low-order modes are highly attenuated even with a thin layer of coating. This coated guide serves as a mode suppressor of the low-order modes, which can be particularly useful for reducing the radar cross section (RCS) of a cavity structure such as a jet inlet. When the coating material is very lossy, low-order modes fall into two distinct groups: highly and lowly attenuated modes. However, as a/lambda (a = radius of the cylinder; lambda = the free-space wavelength) increases, the separation between these two groups becomes less distinctive. The attenuation constants of most of the low-order modes become small, and decrease as a function of lambda sup 2/a sup 3.

What History Tells Us about the Distinct Nature of Chemistry.

PubMed

Chang, Hasok

2017-11-01

Attention to the history of chemistry can help us recognise the characteristics of chemistry that have helped to maintain it as a separate scientific discipline with a unique identity. Three such features are highlighted in this paper. First, chemistry has maintained a distinct type of theoretical thinking, independent from that of physics even in the era of quantum chemistry. Second, chemical research has always been shaped by its ineliminable practical relevance and usefulness. Third, the lived experience of chemistry, spanning the laboratory, the classroom and everyday life, is distinctive in its multidimensional sensuousness. Furthermore, I argue that the combination of these three features makes chemistry an exemplary science.

Distinct Circular Single-Stranded DNA Viruses Exist in Different Soil Types

PubMed Central

Swanson, Maud M.; Dawson, Lorna; Freitag, Thomas E.; Singh, Brajesh K.; Torrance, Lesley; Mushegian, Arcady R.

2015-01-01

The potential dependence of virus populations on soil types was examined by electron microscopy, and the total abundance of virus particles in four soil types was similar to that previously observed in soil samples. The four soil types examined differed in the relative abundances of four morphological groups of viruses. Machair, a unique type of coastal soil in western Scotland and Ireland, differed from the others tested in having a higher proportion of tailed bacteriophages. The other soils examined contained predominantly spherical and thin filamentous virus particles, but the Machair soil had a more even distribution of the virus types. As the first step in looking at differences in populations in detail, virus sequences from Machair and brown earth (agricultural pasture) soils were examined by metagenomic sequencing after enriching for circular Rep-encoding single-stranded DNA (ssDNA) (CRESS-DNA) virus genomes. Sequences from the family Microviridae (icosahedral viruses mainly infecting bacteria) of CRESS-DNA viruses were predominant in both soils. Phylogenetic analysis of Microviridae major coat protein sequences from the Machair viruses showed that they spanned most of the diversity of the subfamily Gokushovirinae, whose members mainly infect obligate intracellular parasites. The brown earth soil had a higher proportion of sequences that matched the morphologically similar family Circoviridae in BLAST searches. However, analysis of putative replicase proteins that were similar to those of viruses in the Circoviridae showed that they are a novel clade of Circoviridae-related CRESS-DNA viruses distinct from known Circoviridae genera. Different soils have substantially different taxonomic biodiversities even within ssDNA viruses, which may be driven by physicochemical factors. PMID:25841004

Recognition of the geologic framework of porphyry deposits on ERTS-1 imagery

NASA Technical Reports Server (NTRS)

Wilson, J. C. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Photointerpretation methods have been most successfully applied in the less vegetated test sites where several previously unknown geologic features have been recognized and known ones extended. Northwest mid-Tertiary faults in the ELY, Nevada area are observed to offset north-trending ranges and abruptly terminate older Mesozoic structures. In the Ray, Arizona area the observed patterns of fault and fracture systems appear to be related to the locations of known porphyry copper deposits. In the Tanacross, Alaska area a number of regional circular features observed may represent near surface intrusions and, therefore, permissive environments for copper porphyries.

NREM Arousal Parasomnias and Their Distinction from Nocturnal Frontal Lobe Epilepsy: A Video EEG Analysis

PubMed Central

Derry, Christopher P.; Harvey, A. Simon; Walker, Matthew C.; Duncan, John S.; Berkovic, Samuel F.

2009-01-01

Study Objectives. To describe the semiological features of NREM arousal parasomnias in detail and identify features that can be used to reliably distinguish parasomnias from nocturnal frontal lobe epilepsy (NFLE). Design. Systematic semiologial evaluation of parasomnias and NFLE seizures recorded on video-EEG monitoring. Patients. 120 events (57 parasomnias, 63 NFLE seizures) from 44 subjects (14 males). Interventions. The presence or absence of 68 elemental clinical features was determined in parasomnias and NFLE seizures. Qualitative analysis of behavior patterns and ictal EEG was undertaken. Statistical analysis was undertaken using established techniques. Results. Elemental clinical features strongly favoring parasomnias included: interactive behavior, failure to wake after event, and indistinct offset (all P < 0.001). Cluster analysis confirmed differences in both the frequency and combination of elemental features in parasomnias and NFLE. A diagnostic decision tree generated from these data correctly classified 94% of events. While sleep stage at onset was discriminatory (82% of seizures occurred during stage 1 or 2 sleep, with 100% of parasomnias occurring from stage 3 or 4 sleep), ictal EEG features were less useful. Video analysis of parasomnias identified three principal behavioral patterns: arousal behavior (92% of events); non-agitated motor behavior (72%); distressed emotional behavior (51%). Conclusions Our results broadly support the concept of confusion arousals, somnambulism and night terrors as prototypical behavior patterns of NREM parasomnias, but as a hierarchical continuum rather than distinct entities. Our observations provide an evidence base to assist in the clinical diagnosis of NREM parasomnias, and their distinction from NFLE seizures, on semiological grounds. Citation: Derry CP; Harvey AS; Walker MC; Duncan JS; Berkovic SF. NREM arousal parasomnias and their distinction from nocturnal frontal lobe epilepsy: a video EEG analysis. SLEEP 2009;32(12):1637-1644. PMID:20041600

Positive-Negative Asymmetry in the Evaluations of Political Candidates. The Role of Features of Similarity and Affect in Voter Behavior.

PubMed

Falkowski, Andrzej; Jabłońska, Magdalena

2018-01-01

In this study we followed the extension of Tversky's research about features of similarity with its application to open sets. Unlike the original closed-set model in which a feature was shifted between a common and a distinctive set, we investigated how addition of new features and deletion of existing features affected similarity judgments. The model was tested empirically in a political context and we analyzed how positive and negative changes in a candidate's profile affect the similarity of the politician to his or her ideal and opposite counterpart. The results showed a positive-negative asymmetry in comparison judgments where enhancing negative features (distinctive for an ideal political candidate) had a greater effect on judgments than operations on positive (common) features. However, the effect was not observed for comparisons to a bad politician. Further analyses showed that in the case of a negative reference point, the relationship between similarity judgments and voting intention was mediated by the affective evaluation of the candidate.

Structure and origin of Australian ring and dome features with reference to the search for asteroid impact events

NASA Astrophysics Data System (ADS)

Glikson, Andrew

2018-01-01

Ring, dome and crater features on the Australian continent and shelf include (A) 38 structures of confirmed or probable asteroid and meteorite impact origin and (B) numerous buried and exposed ring, dome and crater features of undefined origin. A large number of the latter include structural and geophysical elements consistent with impact structures, pending test by field investigations and/or drilling. This paper documents and briefly describes 43 ring and dome features with the aim of appraising their similarities and differences from those of impact structures. Discrimination between impact structures and igneous plugs, volcanic caldera and salt domes require field work and/or drilling. Where crater-like morphological patterns intersect pre-existing linear structural features and contain central morphological highs and unique thrust and fault patterns an impact connection needs to tested in the field. Hints of potential buried impact structures may be furnished by single or multi-ring TMI patterns, circular TMI quiet zones, corresponding gravity patterns, low velocity and non-reflective seismic zones.

Embryonic and post-embryonic development of the polyclad flatworm Maritigrella crozieri; implications for the evolution of spiralian life history traits

PubMed Central

2010-01-01

Background Planktonic life history stages of spiralians share some muscular, nervous and ciliary system characters in common. The distribution of these characters is patchy and can be interpreted either as the result of convergent evolution, or as the retention of primitive spiralian larval features. To understand the evolution of these characters adequate taxon sampling across the Spiralia is necessary. Polyclad flatworms are the only free-living Platyhelminthes that exhibit a continuum of developmental modes, with direct development at one extreme, and indirect development via a trochophore-like larval stage at the other. Here I present embryological and larval anatomical data from the indirect developing polyclad Maritrigrella crozieri, and consider these data within a comparative spiralian context. Results After 196 h hours of embryonic development, M. crozieri hatches as a swimming, planktotrophic larva. Larval myoanatomy consists of an orthogonal grid of circular and longitudinal body wall muscles plus parenchymal muscles. Diagonal body wall muscles develop over the planktonic period. Larval neuroanatomy consists of an apical plate, neuropile, paired nerve cords, a peri-oral nerve ring, a medial nerve, a ciliary band nerve net and putative ciliary photoreceptors. Apical neural elements develop first followed by posterior perikarya and later pharyngeal neural elements. The ciliated larva is encircled by a continuous, pre-oral band of longer cilia, which follows the distal margins of the lobes; it also possesses distinct apical and caudal cilia. Conclusions Within polyclads heterochronic shifts in the development of diagonal bodywall and pharyngeal muscles are correlated with life history strategies and feeding requirements. In contrast to many spiralians, M. crozieri hatch with well developed nervous and muscular systems. Comparisons of the ciliary bands and apical organs amongst spiralian planktonic life-stages reveal differences; M. crozieri lack a distinct ciliary band muscle and flask-shaped epidermal serotonergic cells of the apical organ. Based on current phylogenies, the distribution of ciliary bands and apical organs between polyclads and other spiralians is not congruent with a hypothesis of homology. However, some similarities exist, and this study sets an anatomical framework from which to investigate cellular and molecular mechanisms that will help to distinguish between parallelism, convergence and homology of these features. PMID:20426837

The three-dimensional wake of a cylinder undergoing a combination of translational and rotational oscillation in a quiescent fluid

NASA Astrophysics Data System (ADS)

Nazarinia, M.; Lo Jacono, D.; Thompson, M. C.; Sheridan, J.

2009-06-01

Previous two-dimensional numerical studies have shown that a circular cylinder undergoing both oscillatory rotational and translational motions can generate thrust so that it will actually self-propel through a stationary fluid. Although a cylinder undergoing a single oscillation has been thoroughly studied, the combination of the two oscillations has not received much attention until now. The current research reported here extends the numerical study of Blackburn et al. [Phys. Fluids 11, L4 (1999)] both experimentally and numerically, recording detailed vorticity fields in the wake and using these to elucidate the underlying physics, examining the three-dimensional wake development experimentally, and determining the three-dimensional stability of the wake through Floquet stability analysis. Experiments conducted in the laboratory are presented for a given parameter range, confirming the early results from Blackburn et al. [Phys. Fluids 11, L4 (1999)]. In particular, we confirm the thrust generation ability of a circular cylinder undergoing combined oscillatory motions. Importantly, we also find that the wake undergoes three-dimensional transition at low Reynolds numbers (Re≃100) to an instability mode with a wavelength of about two cylinder diameters. The stability analysis indicates that the base flow is also unstable to another mode at slightly higher Reynolds numbers, broadly analogous to the three-dimensional wake transition mode for a circular cylinder, despite the distinct differences in wake/mode topology. The stability of these flows was confirmed by experimental measurements.

Circular RNA profile identifies circPVT1 as a proliferative factor and prognostic marker in gastric cancer.

PubMed

Chen, Jie; Li, Yan; Zheng, Qiupeng; Bao, Chunyang; He, Jian; Chen, Bin; Lyu, Dongbin; Zheng, Biqiang; Xu, Yu; Long, Ziwen; Zhou, Ye; Zhu, Huiyan; Wang, Yanong; He, Xianghuo; Shi, Yingqiang; Huang, Shenglin

2017-03-01

Circular RNAs (circRNAs) comprise a novel class of widespread non-coding RNAs that may regulate gene expression in eukaryotes. However, the characterization and function of circRNAs in human cancer remain elusive. Here we identified at least 5500 distinct circRNA candidates and a series of circRNAs that are differentially expressed in gastric cancer (GC) tissues compared with matched normal tissues. We further characterized one circRNA derived from the PVT1 gene and termed it as circPVT1. The expression of circPVT1 is often upregulated in GC tissues due to the amplification of its genomic locus. circPVT1 may promote cell proliferation by acting as a sponge for members of the miR-125 family. The level of circPVT1 was observed as an independent prognostic marker for overall survival and disease-free survival of patients with GC. Our findings suggest that circPVT1 is a novel proliferative factor and prognostic marker in GC. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Single bunch transverse instability in a circular accelerator with chromaticity and space charge

DOE PAGES

Balbekov, V.

2015-10-21

The transverse instability of a bunch in a circular accelerator is elaborated in this paper. A new tree-modes model is proposed and developed to describe the most unstable modes of the bunch. This simple and flexible model includes chromaticity and space charge, and can be used with any bunch and wake forms. The dispersion equation for the bunch eigentunes is obtained in form of a third-order algebraic equation. The known head-tail and TMCI modes appear as the limiting cases which are distinctly bounded at zero chromaticity only. It is shown that the instability parameters depend only slightly on the bunchmore » model but they are rather sensitive to the wake shape. In particular, space charge effects are investigated in the paper and it is shown that their influence depends on sign of wake field enhancing the bunch stability if the wake is negative. In addition, the resistive wall wake is considered in detail including a comparison of single and collective effects. A comparison of the results with earlier publications is carried out.« less

Beating motion of a circular cylinder in vortex-induced vibrations

NASA Astrophysics Data System (ADS)

Shen, Linwei; Chan, Eng-Soon; Wei, Yan

2018-04-01

In this paper, beating phenomenon of a circular cylinder in vortex-induced vibration is studied by numerical simulations in a systematic manner. The cylinder mass coefficients of 2 and 10 are considered, and the Reynolds number is 150. Two distinctive frequencies, namely cylinder oscillation and vortex shedding frequencies, are obtained from the harmonic analysis of the cylinder displacement. The result is consistent with that observed in laboratory experiments. It is found that the cylinder oscillation frequency changes with the natural frequency of the cylinder while the reduced velocity is varied. The added-mass coefficient of the cylinder in beating motion is therefore estimated. Meanwhile, the vortex shedding frequency does not change dramatically in the beating situations. In fact, it is very close to 0.2. Accordingly, the lift force coefficient has two main components associated with these two frequencies. Besides, higher harmonics of the cylinder oscillation frequency appear in the spectrum of the lift coefficient. Moreover, the vortex shedding timing is studied in the beating motion by examining the instantaneous flow fields in the wake, and two scenarios of the vortex formation are observed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seyler, Kyle L.; Zhong, Ding; Klein, Dahlia R.

Bulk chromium tri-iodide (CrI 3) has long been known as a layered van der Waals ferromagnet. However, its monolayer form was only recently isolated and confirmed to be a truly two-dimensional (2D) ferromagnet, providing a new platform for investigating light–matter interactions and magneto-optical phenomena in the atomically thin limit. Here in this paper, we report spontaneous circularly polarized photoluminescence in monolayer CrI 3 under linearly polarized excitation, with helicity determined by the monolayer magnetization direction. In contrast, the bilayer CrI 3 photoluminescence exhibits vanishing circular polarization, supporting the recently uncovered anomalous antiferromagnetic interlayer coupling in CrI 3 bilayers. Distinct frommore » the Wannier–Mott excitons that dominate the optical response in well-known 2D van der Waals semiconductors, our absorption and layer-dependent photoluminescence measurements reveal the importance of ligand-field and charge-transfer transitions to the optoelectronic response of atomically thin CrI 3. We attribute the photoluminescence to a parity-forbidden d–d transition characteristic of Cr 3+ complexes, which displays broad linewidth due to strong vibronic coupling and thickness-independent peak energy due to its localized molecular orbital nature.« less

Numerical Solution of the Flow of a Perfect Gas Over A Circular Cylinder at Infinite Mach Number

NASA Technical Reports Server (NTRS)

Hamaker, Frank M.

1959-01-01

A solution for the two-dimensional flow of an inviscid perfect gas over a circular cylinder at infinite Mach number is obtained by numerical methods of analysis. Nonisentropic conditions of curved shock waves and vorticity are included in the solution. The analysis is divided into two distinct regions, the subsonic region which is analyzed by the relaxation method of Southwell and the supersonic region which was treated by the method of characteristics. Both these methods of analysis are inapplicable on the sonic line which is therefore considered separately. The shapes of the sonic line and the shock wave are obtained by iteration techniques. The striking result of the solution is the strong curvature of the sonic line and of the other lines of constant Mach number. Because of this the influence of the supersonic flow on the sonic line is negligible. On comparison with Newtonian flow methods, it is found that the approximate methods show a larger variation of surface pressure than is given by the present solution.

The representation of semantic knowledge in a child with Williams syndrome.

PubMed

Robinson, Sally J; Temple, Christine M

2009-05-01

This study investigated whether there are distinct types of semantic knowledge with distinct representational bases during development. The representation of semantic knowledge in a teenage child (S.T.) with Williams syndrome was explored for the categories of animals, fruit, and vegetables, manipulable objects, and nonmanipulable objects. S.T.'s lexical stores were of a normal size but the volume of "sensory feature" semantic knowledge she generated in oral descriptions was reduced. In visual recognition decisions, S.T. made more false positives to nonitems than did controls. Although overall naming of pictures was unimpaired, S.T. exhibited a category-specific anomia for nonmanipulable objects and impaired naming of visual-feature descriptions of animals. S.T.'s performance was interpreted as reflecting the impaired integration of distinctive features from perceptual input, which may impact upon nonmanipulable objects to a greater extent than the other knowledge categories. Performance was used to inform adult-based models of semantic representation, with category structure proposed to emerge due to differing degrees of dependency upon underlying knowledge types, feature correlations, and the acquisition of information from modality-specific processing modules.

Wave propagation in a plate after impact by a projectile

NASA Technical Reports Server (NTRS)

El-Raheb, M.; Wagner, P.

1987-01-01

The wave propagation in a circular plate after impact by a cylindrical projectile is studied. In the vicinity of impact, the pressure is computed numerically. An intense pressure pulse is generated that peaks 0.2 microns after impact, then drops sharply to a plateau. The response of the plate is determined adopting a modal solution of Mindlin's equations. Velocity and acceleration histories display both propagating and dispersive features.

Demonstration of LiDAR and Orthophotography for Wide Area Assessment at Pueblo Precision Bombing Range #2 Colorado and Borrego Military Wash Area, California

DTIC Science & Technology

2008-12-01

Circular Aiming Point Target Features for BT64 at Borrego Shown on Color Orthophoto ...23 Figure 7. Extracted Railroad Strafing Target at Borrego Shown on the Color Orthophoto ....... 23 iv...topographic maps has developed only within the last 7 to 10 years. Orthophoto imagery was first produced more than over 30 years ago and was first

Low emittance electron storage rings

NASA Astrophysics Data System (ADS)

Levichev, E. B.

2018-01-01

Low-emittance electron (positron) beams are essential for synchrotron light sources, linear collider damping rings, and circular Crab Waist colliders. In this review, the principles and methods of emittance minimization are discussed, prospects for developing relativistic electron storage rings with small beam phase volume are assessed, and problems related to emittance minimization are examined together with their possible solutions. The special features and engineering implementation aspects of various facilities are briefly reviewed.

Minnesota, Iowa, Wisconsin and Mississippi river as seen from Skylab

NASA Image and Video Library

1974-01-06

SL4-139-3932 (December 1973) --- A 70mm hand-held Hasselblad photograph showing parts of Minnesota, Iowa and Wisconsin. Lake Superior is in the upper part of the photo; Duluth at upper left; Castle Rock Flowage and Petenwell Flowage at far right center. Note circular feature (partially formed by rivers) which the Skylab 4 crewmen commented on when they made this fly-over. Photo credit: NASA

Metallurgical features of the formation of a solid-phase metal joint upon electric-circuit heating

NASA Astrophysics Data System (ADS)

Latypov, R. A.; Bulychev, V. V.; Zybin, I. N.

2017-06-01

The thermodynamic conditions of formation of a joint between metals using the solid-phase methods of powder metallurgy, welding, and deposition of functional coatings upon electric-current heating of the surfaces to be joined are studied. Relations are obtained to quantitatively estimate the critical sizes of the circular and linear active centers that result in the formation of stable bonding zones.

Genome of Herbaspirillum seropedicae Strain SmR1, a Specialized Diazotrophic Endophyte of Tropical Grasses

PubMed Central

Pedrosa, Fábio O.; Monteiro, Rose Adele; Wassem, Roseli; Cruz, Leonardo M.; Ayub, Ricardo A.; Colauto, Nelson B.; Fernandez, Maria Aparecida; Fungaro, Maria Helena P.; Grisard, Edmundo C.; Hungria, Mariangela; Madeira, Humberto M. F.; Nodari, Rubens O.; Osaku, Clarice A.; Petzl-Erler, Maria Luiza; Terenzi, Hernán; Vieira, Luiz G. E.; Steffens, Maria Berenice R.; Weiss, Vinicius A.; Pereira, Luiz F. P.; Almeida, Marina I. M.; Alves, Lysangela R.; Marin, Anelis; Araujo, Luiza Maria; Balsanelli, Eduardo; Baura, Valter A.; Chubatsu, Leda S.; Faoro, Helisson; Favetti, Augusto; Friedermann, Geraldo; Glienke, Chirlei; Karp, Susan; Kava-Cordeiro, Vanessa; Raittz, Roberto T.; Ramos, Humberto J. O.; Ribeiro, Enilze Maria S. F.; Rigo, Liu Un; Rocha, Saul N.; Schwab, Stefan; Silva, Anilda G.; Souza, Eliel M.; Tadra-Sfeir, Michelle Z.; Torres, Rodrigo A.; Dabul, Audrei N. G.; Soares, Maria Albertina M.; Gasques, Luciano S.; Gimenes, Ciela C. T.; Valle, Juliana S.; Ciferri, Ricardo R.; Correa, Luiz C.; Murace, Norma K.; Pamphile, João A.; Patussi, Eliana Valéria; Prioli, Alberto J.; Prioli, Sonia Maria A.; Rocha, Carmem Lúcia M. S. C.; Arantes, Olívia Márcia N.; Furlaneto, Márcia Cristina; Godoy, Leandro P.; Oliveira, Carlos E. C.; Satori, Daniele; Vilas-Boas, Laurival A.; Watanabe, Maria Angélica E.; Dambros, Bibiana Paula; Guerra, Miguel P.; Mathioni, Sandra Marisa; Santos, Karine Louise; Steindel, Mario; Vernal, Javier; Barcellos, Fernando G.; Campo, Rubens J.; Chueire, Ligia Maria O.; Nicolás, Marisa Fabiana; Pereira-Ferrari, Lilian; da Conceição Silva, José L.; Gioppo, Nereida M. R.; Margarido, Vladimir P.; Menck-Soares, Maria Amélia; Pinto, Fabiana Gisele S.; Simão, Rita de Cássia G.; Takahashi, Elizabete K.; Yates, Marshall G.; Souza, Emanuel M.

2011-01-01

The molecular mechanisms of plant recognition, colonization, and nutrient exchange between diazotrophic endophytes and plants are scarcely known. Herbaspirillum seropedicae is an endophytic bacterium capable of colonizing intercellular spaces of grasses such as rice and sugar cane. The genome of H. seropedicae strain SmR1 was sequenced and annotated by The Paraná State Genome Programme—GENOPAR. The genome is composed of a circular chromosome of 5,513,887 bp and contains a total of 4,804 genes. The genome sequence revealed that H. seropedicae is a highly versatile microorganism with capacity to metabolize a wide range of carbon and nitrogen sources and with possession of four distinct terminal oxidases. The genome contains a multitude of protein secretion systems, including type I, type II, type III, type V, and type VI secretion systems, and type IV pili, suggesting a high potential to interact with host plants. H. seropedicae is able to synthesize indole acetic acid as reflected by the four IAA biosynthetic pathways present. A gene coding for ACC deaminase, which may be involved in modulating the associated plant ethylene-signaling pathway, is also present. Genes for hemagglutinins/hemolysins/adhesins were found and may play a role in plant cell surface adhesion. These features may endow H. seropedicae with the ability to establish an endophytic life-style in a large number of plant species. PMID:21589895

Fatty acid modulated human serum albumin binding of the β-carboline alkaloids norharmane and harmane.

PubMed

Domonkos, Celesztina; Fitos, Ilona; Visy, Júlia; Zsila, Ferenc

2013-12-02

Harmane and norharmane are representative members of the large group of natural β-carboline alkaloids featured with diverse pharmacological activities. In blood, these agents are transported by human serum albumin (HSA) which has a profound impact on the pharmacokinetic and pharmacodynamic properties of many therapeutic drugs and xenobiotics. By combination of various spectroscopic methods, the present contribution is aimed to elucidate how nonesterified fatty acids (FAs), the primary endogenous ligands of HSA, affect the binding properties of harmane and norharmane. Analysis of induced circular dichroism (CD) and fluorescence spectroscopic data indicates the inclusion of the neutral form of both molecules into the binding pocket of subdomain IIIA, which hosts two FA binding sites, too. The induced CD and UV absorption spectra of harmane and norharmane exhibit peculiar changes upon addition of FAs, suggesting the formation of ternary complexes in which the lipid ligands significantly alter the binding mode of the alkaloids via cooperative allosteric mechanism. To our knowledge, it is the first instance of the demonstration of drug-FA cobinding at site IIIA. In line with these results, molecular docking calculations showed two distinct binding positions of norharmane within subdomain IIIA. The profound increase in the affinity constants of β-carbolines estimated in the presence of FAs predicts that the unbound, pharmacologically active serum fraction of these compounds strongly depends on the actual lipid binding profile of HSA.

The separation between the 5'-3' ends in long RNA molecules is short and nearly constant.

PubMed

Leija-Martínez, Nehemías; Casas-Flores, Sergio; Cadena-Nava, Rubén D; Roca, Joan A; Mendez-Cabañas, José A; Gomez, Eduardo; Ruiz-Garcia, Jaime

2014-12-16

RNA molecules play different roles in coding, decoding and gene expression regulation. Such roles are often associated to the RNA secondary or tertiary structures. The folding dynamics lead to multiple secondary structures of long RNA molecules, since an RNA molecule might fold into multiple distinct native states. Despite an ensemble of different structures, it has been theoretically proposed that the separation between the 5' and 3' ends of long single-stranded RNA molecules (ssRNA) remains constant, independent of their base content and length. Here, we present the first experimental measurements of the end-to-end separation in long ssRNA molecules. To determine this separation, we use single molecule Fluorescence Resonance Energy Transfer of fluorescently end-labeled ssRNA molecules ranging from 500 to 5500 nucleotides in length, obtained from two viruses and a fungus. We found that the end-to-end separation is indeed short, within 5-9 nm. It is remarkable that the separation of the ends of all RNA molecules studied remains small and similar, despite the origin, length and differences in their secondary structure. This implies that the ssRNA molecules are 'effectively circularized' something that might be a general feature of RNAs, and could result in fine-tuning for translation and gene expression regulation. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses.

PubMed

Pedrosa, Fábio O; Monteiro, Rose Adele; Wassem, Roseli; Cruz, Leonardo M; Ayub, Ricardo A; Colauto, Nelson B; Fernandez, Maria Aparecida; Fungaro, Maria Helena P; Grisard, Edmundo C; Hungria, Mariangela; Madeira, Humberto M F; Nodari, Rubens O; Osaku, Clarice A; Petzl-Erler, Maria Luiza; Terenzi, Hernán; Vieira, Luiz G E; Steffens, Maria Berenice R; Weiss, Vinicius A; Pereira, Luiz F P; Almeida, Marina I M; Alves, Lysangela R; Marin, Anelis; Araujo, Luiza Maria; Balsanelli, Eduardo; Baura, Valter A; Chubatsu, Leda S; Faoro, Helisson; Favetti, Augusto; Friedermann, Geraldo; Glienke, Chirlei; Karp, Susan; Kava-Cordeiro, Vanessa; Raittz, Roberto T; Ramos, Humberto J O; Ribeiro, Enilze Maria S F; Rigo, Liu Un; Rocha, Saul N; Schwab, Stefan; Silva, Anilda G; Souza, Eliel M; Tadra-Sfeir, Michelle Z; Torres, Rodrigo A; Dabul, Audrei N G; Soares, Maria Albertina M; Gasques, Luciano S; Gimenes, Ciela C T; Valle, Juliana S; Ciferri, Ricardo R; Correa, Luiz C; Murace, Norma K; Pamphile, João A; Patussi, Eliana Valéria; Prioli, Alberto J; Prioli, Sonia Maria A; Rocha, Carmem Lúcia M S C; Arantes, Olívia Márcia N; Furlaneto, Márcia Cristina; Godoy, Leandro P; Oliveira, Carlos E C; Satori, Daniele; Vilas-Boas, Laurival A; Watanabe, Maria Angélica E; Dambros, Bibiana Paula; Guerra, Miguel P; Mathioni, Sandra Marisa; Santos, Karine Louise; Steindel, Mario; Vernal, Javier; Barcellos, Fernando G; Campo, Rubens J; Chueire, Ligia Maria O; Nicolás, Marisa Fabiana; Pereira-Ferrari, Lilian; Silva, José L da Conceição; Gioppo, Nereida M R; Margarido, Vladimir P; Menck-Soares, Maria Amélia; Pinto, Fabiana Gisele S; Simão, Rita de Cássia G; Takahashi, Elizabete K; Yates, Marshall G; Souza, Emanuel M

2011-05-01

The molecular mechanisms of plant recognition, colonization, and nutrient exchange between diazotrophic endophytes and plants are scarcely known. Herbaspirillum seropedicae is an endophytic bacterium capable of colonizing intercellular spaces of grasses such as rice and sugar cane. The genome of H. seropedicae strain SmR1 was sequenced and annotated by The Paraná State Genome Programme--GENOPAR. The genome is composed of a circular chromosome of 5,513,887 bp and contains a total of 4,804 genes. The genome sequence revealed that H. seropedicae is a highly versatile microorganism with capacity to metabolize a wide range of carbon and nitrogen sources and with possession of four distinct terminal oxidases. The genome contains a multitude of protein secretion systems, including type I, type II, type III, type V, and type VI secretion systems, and type IV pili, suggesting a high potential to interact with host plants. H. seropedicae is able to synthesize indole acetic acid as reflected by the four IAA biosynthetic pathways present. A gene coding for ACC deaminase, which may be involved in modulating the associated plant ethylene-signaling pathway, is also present. Genes for hemagglutinins/hemolysins/adhesins were found and may play a role in plant cell surface adhesion. These features may endow H. seropedicae with the ability to establish an endophytic life-style in a large number of plant species.

Mars on 25 December 2003

NASA Technical Reports Server (NTRS)

2004-01-01

8 January 2004 This is how Mars appeared to the Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) wide angle system on 25 December 2003, the day that Beagle 2 and Mars Express reached the red planet. The large, dark region just left of center is Syrtis Major, a persistent low albedo terrain known to astronomers for nearly four centuries before the first spacecraft went to Mars. Immediately to the right (east) of Syrtis Major is the somewhat circular plain, Isidis Planitia. Beagle 2 arrived in Isidis Planitia only about 18 minutes before Mars Global Surveyor flew over the region and acquired a portion of this global view. Relative to other global images of Mars acquired by MGS over the past several martian years, the surface features were not as sharp and distinct on 25 December 2003 because of considerable haze kicked up by large dust storms in the western and southern hemispheres during th previous two weeks. The picture is a composite of several MGS MOC red and blue daily global images that have been map-projected and digitally wrapped to a sphere. Although the effect here is minor, inspection of this mosaic shows zones that appear smudged or blurry. The high dust opacity on 25 December impacted MOC's oblique viewing geometry toward the edges of each orbit's daily global mapping image, thus emphasizing the 'blurry' zones between images acquired on successive orbits.

The Characterization of GSDMB Splicing and Backsplicing Profiles Identifies Novel Isoforms and a Circular RNA That Are Dysregulated in Multiple Sclerosis.

PubMed

Cardamone, Giulia; Paraboschi, Elvezia Maria; Rimoldi, Valeria; Duga, Stefano; Soldà, Giulia; Asselta, Rosanna

2017-03-07

Abnormalities in alternative splicing (AS) are emerging as recurrent features in autoimmune diseases (AIDs). In particular, a growing body of evidence suggests the existence of a pathogenic association between a generalized defect in splicing regulatory genes and multiple sclerosis (MS). Moreover, several studies have documented an unbalance in alternatively-spliced isoforms in MS patients possibly contributing to the disease etiology. In this work, using a combination of PCR-based techniques (reverse-transcription (RT)-PCR, fluorescent-competitive, real-time, and digital RT-PCR assays), we investigated the alternatively-spliced gene encoding Gasdermin B, GSDMB , which was repeatedly associated with susceptibility to asthma and AIDs. The in-depth characterization of GSDMB AS and backsplicing profiles led us to the identification of an exonic circular RNA (ecircRNA) as well as of novel GSDMB in-frame and out-of-frame isoforms. The non-productive splicing variants were shown to be downregulated by the nonsense-mediated mRNA decay (NMD) in human cell lines, suggesting that GSDMB levels are significantly modulated by NMD. Importantly, both AS isoforms and the identified ecircRNA were significantly dysregulated in peripheral blood mononuclear cells of relapsing-remitting MS patients compared to controls, further supporting the notion that aberrant RNA metabolism is a characteristic feature of the disease.

Al Umchaimin depression, Western Iraq: An impact structure?

NASA Astrophysics Data System (ADS)

Underwood, James R., Jr.

Al Umchaimin, in Arabic 'hiding place' or 'place of ambush', is located at latitude 32 degrees 35.5 N and longitude 39 degrees 25 E. The nearly circular depression averages 2.75 km in diameter and is 33-42 m deep. It is floored with fine-grained, clay-rich deposits, estimated to be 36 m thick, the surface of which shows well-developed desiccation fissures or mudcracks when dry. Because of its nearly circular planimetric shape and its apparent isolation from other surface and subsurface features, it has been considered by some to be a possible meteorite impact structure and by others to be a surface collapse feature that originated following removal of magma from the subsurface as the magma extruded elsewhere. Al Umchaimin was listed in the U.S. Geological Survey tabulation of 110 structures worldwide for which a meteorite impact origin had been suggested. It was placed in Category 6 Structures for which more data are required for classification. It is concluded that, on the basis of the studies that have been made of Al Umchaimin and on the basis of the brief site visit made, Al Umchaimin probably is not an impact structure but most likely resulted from the enlargement and coalescence of sink holes and eventual collapse of the roof material into the resulting cavity.

Al Umchaimin depression, Western Iraq: An impact structure?

NASA Technical Reports Server (NTRS)

Underwood, James R., Jr.

1992-01-01

Al Umchaimin, in Arabic 'hiding place' or 'place of ambush', is located at latitude 32 degrees 35.5 N and longitude 39 degrees 25 E. The nearly circular depression averages 2.75 km in diameter and is 33-42 m deep. It is floored with fine-grained, clay-rich deposits, estimated to be 36 m thick, the surface of which shows well-developed desiccation fissures or mudcracks when dry. Because of its nearly circular planimetric shape and its apparent isolation from other surface and subsurface features, it has been considered by some to be a possible meteorite impact structure and by others to be a surface collapse feature that originated following removal of magma from the subsurface as the magma extruded elsewhere. Al Umchaimin was listed in the U.S. Geological Survey tabulation of 110 structures worldwide for which a meteorite impact origin had been suggested. It was placed in Category 6 Structures for which more data are required for classification. It is concluded that, on the basis of the studies that have been made of Al Umchaimin and on the basis of the brief site visit made, Al Umchaimin probably is not an impact structure but most likely resulted from the enlargement and coalescence of sink holes and eventual collapse of the roof material into the resulting cavity.

Unsentimental Ethics: Towards a Content-Specific Account of the Moral-Conventional Distinction

ERIC Educational Resources Information Center

Royzman, Edward B.; Leeman, Robert F.; Baron, Jonathan

2009-01-01

In this paper, we offer an overview and a critique of the existing theories of the moral-conventional distinction, with emphasis on Nichols's [Nichols, S. (2002). Norms with feeling: Towards a psychological account of moral judgment. "Cognition, 84", 221-236] neo-sentimentalist approach. After discussing some distinctive features of Nichols's…

Focused fluid-flow processes through high-quality bathymetric, 2D seismic and Chirp data from the southern parts of the Bay of Biscay, France

NASA Astrophysics Data System (ADS)

Baudon, Catherine; Gillet, Hervé; Cremer, Michel

2013-04-01

High-quality bathymetric, 2D seismic and Chirp data located in the southern parts of the Bay of Biscay, France, collected by the University of Bordeaux 1 (Cruises ITSAS 2, 2001; PROSECAN 3, 2006 and SARGASS, 2010) have recently been compiled. The survey area widely covers the Capbreton Canyon, which lies on the boundary between two major structural zones: the Aquitanian passive margin to the North, and the Basque-Cantabrian margin to the South which corresponds to the offshore Pyrenean front. The dataset revealed a large number of key seafloor features potentially associated with focused fluid-flow processes and subsurface sediment-remobilization. Focused fluid migration through sub-seabed sediments is a common phenomenon on continental margins worldwide and has widespread implications from both industrial and fundamental perspectives, from seafloor marine environmental issues to petroleum exploration and hazard assessments. Our study analyses the relationships between seafloor features, deeper structures and fluid migration through the Plio-Quaternary sedimentary pile. The geometrical characteristics, mechanisms of formation and kinematics of four main groups of seabed features have been investigated. (i) A 150km2 field of pockmarks can be observed on the Basque margin. These features are cone-shaped circular or elliptical depressions that are either randomly distributed as small pockmarks (diameter < 20m) or aligned in trains of large pockmarks (ranging from 200 to 600m in diameter) along shallow troughs leading downstream to the Capbreton Canyon. Seismic data show that most pockmarks reach the seabed through vertically staked V-shaped features but some are buried and show evidence of lateral migration through time. (ii) A second field of widely-spaced groups of pockmarks pierce the upper slope of the Aquitanian margin. These depressions are typically a few hundred meters in diameter and seem to be preferentially located in the troughs or on the stoss sides of sediment waves. (iii) Several trains of small circular depressions are distributed along narrow channels that are up to 70 km in length and run downslope the south-western sides of the marginal Landes Plateau. (iv) The dataset also revealed isolated mega-pockmarks located on the Landes Plateau. These 1,5km-wide circular depressions exhibit a convex upward central part and show no evidence of underlying structure nor fluid migration pathways. However, collapsed strata within the infill sediments suggest that the structure is related to fluid expulsion. Interestingly, our results show that the base level of initiation for many of these features corresponds to a transition in seismic facies that is also marked by a seismic unconformity. This boundary can be interpreted as reflecting drastic changes in the sedimentary record related to an important transition in climatic cycles (i.e. base of Quaternary or Mid Pleistocene Revolution) and/or changes in the Mediterranean Outflow Water (bottom current).

Circular dichroism study of the carbohydrate-modified opioid peptides

NASA Astrophysics Data System (ADS)

Horvat, Štefica; Otvos, Laszlo; Urge, Laszlo; Horvat, Jaroslav; Čudić, Mare; Varga-Defterdarović, Lidija

1999-09-01

The conformational preferences of enkephalins and the related glycoconjugates in which free or protected carbohydrate moieties were linked to the opioid peptides through an ether, ester or amide bond were investigated by circular dichroism spectroscopy in water, trifluoroethanol and water-trifluoroethanol mixtures. The analysis of the spectra revealed that the conformation of the enkephalin molecule is very sensitive to slight changes in the peptide structure around the C-terminal region. It was found that the type II β-turn structures are populated in N-terminal tetrapeptide enkephalin fragment, while leucine-enkephalin amide feature a type I (III) β-turn structure in solution. Incorporation of the sugar moiety into opioid peptide compound did not significantly influence the overall conformation of the peptide backbone, although minor intensity changes may reflect shifts in the population of the different turn systems. These small structural alterations can be responsible for the receptor-subtype selectivity of the various carbohydrate-modified enkephalin analogs.

Size dependent magnetic and magneto-optical properties of Ni0.2Zn0.8Fe2O4 nanoparticles

NASA Astrophysics Data System (ADS)

Li, Oksana A.; Lin, Chun-Rong; Chen, Hung-Yi; Hsu, Hua-Shu; Shih, Kun-Yauh; Edelman, Irina S.; Wu, Kai-Wun; Tseng, Yaw-Teng; Ovchinnikov, Sergey G.; Lee, Jiann-Shing

2016-06-01

Ni0.2Zn0.8Fe2O4 spinel nanoparticles have been synthesized by combustion method. Average particles size varies from 15.5 to 50.0 nm depending on annealing temperature. Correlations between particles size and magnetic and magneto-optical properties are investigated. Magnetization dependences on temperature and external magnetic field correspond to the sum of paramagnetic and superparamagnetic response. Critical size of single-domain transition is found to be 15.9 nm. Magnetic circular dichroism (MCD) studies of nickel zinc spinel are presented here for the first time. The features in magnetic circular dichroism spectrum are assigned to the one-ion d-d transitions in Fe3+ and Ni2+ ions, as well to the intersublattice and intervalence charge transfer transitions. The MCD spectrum rearrangement was revealed with the change of the nanoparticles size.

Process for making ceramic hot gas filter

DOEpatents

Connolly, Elizabeth Sokolinski; Forsythe, George Daniel; Domanski, Daniel Matthew; Chambers, Jeffrey Allen; Rajendran, Govindasamy Paramasivam

2001-01-01

A ceramic hot-gas candle filter having a porous support of filament-wound oxide ceramic yarn at least partially surrounded by a porous refractory oxide ceramic matrix, and a membrane layer on at least one surface thereof. The membrane layer may be on the outer surface, the inner surface, or both the outer and inner surface of the porous support. The membrane layer may be formed of an ordered arrangement of circularly wound, continuous filament oxide ceramic yarn, a ceramic filler material which is less permeable than the filament-wound support structure, or some combination of continuous filament and filler material. A particularly effective membrane layer features circularly wound filament with gaps intentionally placed between adjacent windings, and a filler material of ceramic particulates uniformly distributed throughout the gap region. The filter can withstand thermal cycling during backpulse cleaning and is resistant to chemical degradation at high temperatures.

Ceramic hot-gas filter

DOEpatents

Connolly, Elizabeth Sokolinski; Forsythe, George Daniel; Domanski, Daniel Matthew; Chambers, Jeffrey Allen; Rajendran, Govindasamy Paramasivam

1999-01-01

A ceramic hot-gas candle filter having a porous support of filament-wound oxide ceramic yarn at least partially surrounded by a porous refractory oxide ceramic matrix, and a membrane layer on at least one surface thereof. The membrane layer may be on the outer surface, the inner surface, or both the outer and inner surface of the porous support. The membrane layer may be formed of an ordered arrangement of circularly wound, continuous filament oxide ceramic yarn, a ceramic filler material which is less permeable than the filament-wound support structure, or some combination of continuous filament and filler material. A particularly effective membrane layer features circularly wound filament with gaps intentionally placed between adjacent windings, and a filler material of ceramic particulates uniformly distributed throughout the gap region. The filter can withstand thermal cycling during backpulse cleaning and is resistant to chemical degradation at high temperatures.

All-dielectric reflective half-wave plate metasurface based on the anisotropic excitation of electric and magnetic dipole resonances.

PubMed

Ma, Zhijie; Hanham, Stephen M; Gong, Yandong; Hong, Minghui

2018-02-15

We present an all-dielectric metasurface that simultaneously supports electric and magnetic dipole resonances for orthogonal polarizations. At resonances, the metasurface reflects the incident light with nearly perfect efficiency and provides a phase difference of π in the two axes, making a low-loss half-wave plate in reflection mode. The polarization handedness of the incident circularly polarized light is preserved after reflection; this is different from either a pure electric mirror or magnetic mirror. With the features of high reflection and circular polarization conservation, the metamirror is an ideal platform for the geometric phase-based gradient metasurface functioning in reflection mode. Anomalous reflection with the planar meta-mirror is demonstrated as a proof of concept. The proposed meta-mirror can be a good alternative to plasmonic metasurfaces for future compact and high-efficiency metadevices for polarization and phase manipulation in reflection mode.

Radiation-pressure acceleration of ion beams from nanofoil targets: the leaky light-sail regime.

PubMed

Qiao, B; Zepf, M; Borghesi, M; Dromey, B; Geissler, M; Karmakar, A; Gibbon, P

2010-10-08

A new ion radiation-pressure acceleration regime, the "leaky light sail," is proposed which uses sub-skin-depth nanometer foils irradiated by circularly polarized laser pulses. In the regime, the foil is partially transparent, continuously leaking electrons out along with the transmitted laser field. This feature can be exploited by a multispecies nanofoil configuration to stabilize the acceleration of the light ion component, supplementing the latter with an excess of electrons leaked from those associated with the heavy ions to avoid Coulomb explosion. It is shown by 2D particle-in-cell simulations that a monoenergetic proton beam with energy 18 MeV is produced by circularly polarized lasers at intensities of just 10¹⁹  W/cm². 100 MeV proton beams are obtained by increasing the intensities to 2 × 10²⁰  W/cm².

Morphology of a Hot Coronal Cavity Core as Observed by Hinode/XRT

NASA Technical Reports Server (NTRS)

Reeves, K. K.; Gibson, S. E.; Kucera, T. A.; Hudson, H. S.

2010-01-01

We follow a coronal cavity that was observed by Hinode/XRT during the summer of 2008. This cavity has a persistent area of relatively bright X-ray emission in its center. We use multifilter data from XRT to study the thermal emission from this cavity, and find that the bright center is hotter than the surrounding cavity plasma with temperatures of about 1.6 MK. We follow the morphology of this hot feature as the cavity structure rotates over the limb during the several days between July 19 - 23 2008. We find that the hot structure at first looks fairly circular, then appears to expand and elongate, and then shrinks again to a compact circular shape. We interpret this apparent change in shape as being due to the morphology of the filament channel associated with the cavity, and the change in viewing angle as the structure rotates over the limb of the Sun.

Ceramic hot-gas filter

DOEpatents

Connolly, E.S.; Forsythe, G.D.; Domanski, D.M.; Chambers, J.A.; Rajendran, G.P.

1999-05-11

A ceramic hot-gas candle filter is described having a porous support of filament-wound oxide ceramic yarn at least partially surrounded by a porous refractory oxide ceramic matrix, and a membrane layer on at least one surface thereof. The membrane layer may be on the outer surface, the inner surface, or both the outer and inner surface of the porous support. The membrane layer may be formed of an ordered arrangement of circularly wound, continuous filament oxide ceramic yarn, a ceramic filler material which is less permeable than the filament-wound support structure, or some combination of continuous filament and filler material. A particularly effective membrane layer features circularly wound filament with gaps intentionally placed between adjacent windings, and a filler material of ceramic particulates uniformly distributed throughout the gap region. The filter can withstand thermal cycling during back pulse cleaning and is resistant to chemical degradation at high temperatures.

Attention to Distinct Goal-relevant Features Differentially Guides Semantic Knowledge Retrieval.

PubMed

Hanson, Gavin K; Chrysikou, Evangelia G

2017-07-01

A critical aspect of conceptual knowledge is the selective activation of goal-relevant aspects of meaning. Although the contributions of ventrolateral prefrontal and posterior temporal areas to semantic cognition are well established, the precise role of posterior parietal cortex in semantic control remains unknown. Here, we examined whether this region modulates attention to goal-relevant features within semantic memory according to the same principles that determine the salience of task-relevant object properties during visual attention. Using multivoxel pattern analysis, we decoded attentional referents during a semantic judgment task, in which participants matched an object cue to a target according to concrete (i.e., color, shape) or abstract (i.e., function, thematic context) semantic features. The goal-relevant semantic feature participants attended to (e.g., color or shape, function or theme) could be decoded from task-associated cortical activity with above-chance accuracy, a pattern that held for both concrete and abstract semantic features. A Bayesian confusion matrix analysis further identified differential contributions to representing attentional demands toward specific object properties across lateral prefrontal, posterior temporal, and inferior parietal regions, with the dorsolateral pFC supporting distinctions between higher-order properties and the left intraparietal sulcus being the only region supporting distinctions across all semantic features. These results are the first to demonstrate that patterns of neural activity in the parietal cortex are sensitive to which features of a concept are attended to, thus supporting the contributions of posterior parietal cortex to semantic control.

Renal cell carcinoma with t(6:11) (p21;q12). A case report highlighting distinctive immunohistologic features of this rare tumor.

PubMed

Arneja, Sarabjeet Kaur; Gujar, Neeraj

2015-01-01

Renal cell carcinoma (RCC) with t(6:11) (p21;q12) are extremely rare, fewer than 30 cases have been reported in literature. These tumors are characterized by specific chromosomal translocation involving TFEB, as against the more commonly known TFE3 (Xp11.2) translocation associated RCCs. The distinctive immnohistologic features are helpful in enabling a diagnosis of this rare tumor, otherwise diagnosed by fluorescence in situ hybridization assay, specific for detecting TFEB gene rearrangement. Herein, we report a case of this rare tumor in a 11 years old boy, with the objective of highlighting distinctive light microscopic and immuno-phenotypic features of this rare sub-type of translocation associated renal cell carcinoma, otherwise diagnosed by fluorescence in situ hybridization technique. Morphologically tumor showed distinctive biphasic population of cells, large epitheloid cells with voluminous eosinophillic cytoplasm and smaller cells with much lesser amount of cytoplasm and small rounded nuclei. The smaller cells at places clustered around hyaline pink material forming "pseudorosettes". population. Immunohistochemically both types of tumor cells showed negativity for pan CK (cytokeratin), EMA (epitheleal membrane antigen) and TFE3 (transcription factor E3). HMB 45 (human melanoma black 45) and Melan- A /MART 1 (melanoma antigen recognized by T cells) were moderate to strongly expressed. On review of literature, most RCCs with t(6;11) translocation have been reported to be negative for pan cytokeratins and EMA. Published literature also shows that the most distinctive immunohistochemical feature of t(6;11) translocation RCC is nuclear staining for TFEB protein. Immunostains for TFE3 have always been negative in the reported cases. It is noteworthy that immunoreactivity for melanocytic markers HMB45 and Melan A and immunonegativity for epithelial markers pan CK and EMA may lead to misdiagnosis of angiomyolipoma to the unwary. Knowledge of distinctive morphological and immuno-histochemical features of this tumor can help in establishing a diagnosis of this rare subset of translocation associated RCC on routine hematoxylin and eosin (H and E) staining and immunophenotyping. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

Mass Spectrometer Containing Multiple Fixed Collectors

NASA Technical Reports Server (NTRS)

Moskala, Robert; Celo, Alan; Voss, Guenter; Shaffer, Tom

2008-01-01

A miniature mass spectrometer that incorporates features not typically found in prior mass spectrometers is undergoing development. This mass spectrometer is designed to simultaneously measure the relative concentrations of five gases (H2, He, N2, O2, and Ar) in air, over the relative-concentration range from 10(exp -6) to 1, during a sampling time as short as 1 second. It is intended to serve as a prototype of a product line of easy-to-use, portable, lightweight, highspeed, relatively inexpensive instruments for measuring concentrations of multiple chemical species in such diverse applications as detecting explosive or toxic chemicals in air, monitoring and controlling industrial processes, measuring concentrations of deliberately introduced isotopes in medical and biological investigations, and general environmental monitoring. The heart of this mass spectrometer is an integral combination of a circular cycloidal mass analyzer, multiple fixed ion collectors, and two mass-selective ion sources. By circular cycloidal mass analyzer is meant an analyzer that includes (1) two concentric circular cylindrical electrodes for applying a radial electric field and (2) a magnet arranged to impose a magnetic flux aligned predominantly along the cylindrical axis, so that ions, once accelerated into the annulus between the electrodes, move along circular cycloidal trajectories. As in other mass analyzers, trajectory of each ion is determined by its mass-to-charge ratio, and so ions of different species can be collected simultaneously by collectors (Faraday cups) at different locations intersected by the corresponding trajectories (see figure). Unlike in other mass analyzers, the installation of additional collectors to detect additional species does not necessitate increasing the overall size of the analyzer assembly.

Combining local and global limitations of visual search.

PubMed

Põder, Endel

2017-04-01

There are different opinions about the roles of local interactions and central processing capacity in visual search. This study attempts to clarify the problem using a new version of relevant set cueing. A central precue indicates two symmetrical segments (that may contain a target object) within a circular array of objects presented briefly around the fixation point. The number of objects in the relevant segments, and density of objects in the array were varied independently. Three types of search experiments were run: (a) search for a simple visual feature (color, size, and orientation); (b) conjunctions of simple features; and (c) spatial configuration of simple features (rotated Ts). For spatial configuration stimuli, the results were consistent with a fixed global processing capacity and standard crowding zones. For simple features and their conjunctions, the results were different, dependent on the features involved. While color search exhibits virtually no capacity limits or crowding, search for an orientation target was limited by both. Results for conjunctions of features can be partly explained by the results from the respective features. This study shows that visual search is limited by both local interference and global capacity, and the limitations are different for different visual features.

Feature Integration Theory Revisited: Dissociating Feature Detection and Attentional Guidance in Visual Search

ERIC Educational Resources Information Center

Chan, Louis K. H.; Hayward, William G.

2009-01-01

In feature integration theory (FIT; A. Treisman & S. Sato, 1990), feature detection is driven by independent dimensional modules, and other searches are driven by a master map of locations that integrates dimensional information into salience signals. Although recent theoretical models have largely abandoned this distinction, some observed…

Looking at faces from different angles: Europeans fixate different features in Asian and Caucasian faces.

PubMed

Brielmann, Aenne A; Bülthoff, Isabelle; Armann, Regine

2014-07-01

Race categorization of faces is a fast and automatic process and is known to affect further face processing profoundly and at earliest stages. Whether processing of own- and other-race faces might rely on different facial cues, as indicated by diverging viewing behavior, is much under debate. We therefore aimed to investigate two open questions in our study: (1) Do observers consider information from distinct facial features informative for race categorization or do they prefer to gain global face information by fixating the geometrical center of the face? (2) Does the fixation pattern, or, if facial features are considered relevant, do these features differ between own- and other-race faces? We used eye tracking to test where European observers look when viewing Asian and Caucasian faces in a race categorization task. Importantly, in order to disentangle centrally located fixations from those towards individual facial features, we presented faces in frontal, half-profile and profile views. We found that observers showed no general bias towards looking at the geometrical center of faces, but rather directed their first fixations towards distinct facial features, regardless of face race. However, participants looked at the eyes more often in Caucasian faces than in Asian faces, and there were significantly more fixations to the nose for Asian compared to Caucasian faces. Thus, observers rely on information from distinct facial features rather than facial information gained by centrally fixating the face. To what extent specific features are looked at is determined by the face's race. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

Aerodynamics of the flying snake Chrysopelea paradisi: how a bluff body cross-sectional shape contributes to gliding performance.

PubMed

Holden, Daniel; Socha, John J; Cardwell, Nicholas D; Vlachos, Pavlos P

2014-02-01

A prominent feature of gliding flight in snakes of the genus Chrysopelea is the unique cross-sectional shape of the body, which acts as the lifting surface in the absence of wings. When gliding, the flying snake Chrysopelea paradisi morphs its circular cross-section into a triangular shape by splaying its ribs and flattening its body in the dorsoventral axis, forming a geometry with fore-aft symmetry and a thick profile. Here, we aimed to understand the aerodynamic properties of the snake's cross-sectional shape to determine its contribution to gliding at low Reynolds numbers. We used a straight physical model in a water tunnel to isolate the effects of 2D shape, analogously to studying the profile of an airfoil of a more typical flyer. Force measurements and time-resolved (TR) digital particle image velocimetry (DPIV) were used to determine lift and drag coefficients, wake dynamics and vortex-shedding characteristics of the shape across a behaviorally relevant range of Reynolds numbers and angles of attack. The snake's cross-sectional shape produced a maximum lift coefficient of 1.9 and maximum lift-to-drag ratio of 2.7, maintained increases in lift up to 35 deg, and exhibited two distinctly different vortex-shedding modes. Within the measured Reynolds number regime (Re=3000-15,000), this geometry generated significantly larger maximum lift coefficients than many other shapes including bluff bodies, thick airfoils, symmetric airfoils and circular arc airfoils. In addition, the snake's shape exhibited a gentle stall region that maintained relatively high lift production even up to the highest angle of attack tested (60 deg). Overall, the cross-sectional geometry of the flying snake demonstrated robust aerodynamic behavior by maintaining significant lift production and near-maximum lift-to-drag ratios over a wide range of parameters. These aerodynamic characteristics help to explain how the snake can glide at steep angles and over a wide range of angles of attack, but more complex models that account for 3D effects and the dynamic movements of aerial undulation are required to fully understand the gliding performance of flying snakes.

Shapes, scents and sounds: quantifying the full multi-sensory basis of conceptual knowledge.

PubMed

Hoffman, Paul; Lambon Ralph, Matthew A

2013-01-01

Contemporary neuroscience theories assume that concepts are formed through experience in multiple sensory-motor modalities. Quantifying the contribution of each modality to different object categories is critical to understanding the structure of the conceptual system and to explaining category-specific knowledge deficits. Verbal feature listing is typically used to elicit this information but has a number of drawbacks: sensory knowledge often cannot easily be translated into verbal features and many features are experienced in multiple modalities. Here, we employed a more direct approach in which subjects rated their knowledge of objects in each sensory-motor modality separately. Compared with these ratings, feature listing over-estimated the importance of visual form and functional knowledge and under-estimated the contributions of other sensory channels. An item's sensory rating proved to be a better predictor of lexical-semantic processing speed than the number of features it possessed, suggesting that ratings better capture the overall quantity of sensory information associated with a concept. Finally, the richer, multi-modal rating data not only replicated the sensory-functional distinction between animals and non-living things but also revealed novel distinctions between different types of artefact. Hierarchical cluster analyses indicated that mechanical devices (e.g., vehicles) were distinct from other non-living objects because they had strong sound and motion characteristics, making them more similar to animals in this respect. Taken together, the ratings align with neuroscience evidence in suggesting that a number of distinct sensory processing channels make important contributions to object knowledge. Multi-modal ratings for 160 objects are provided as supplementary materials. Copyright © 2012 Elsevier Ltd. All rights reserved.

Review on Polarization Selective Terahertz Metamaterials: from Chiral Metamaterials to Stereometamaterials

NASA Astrophysics Data System (ADS)

Philip, Elizabath; Zeki Güngördü, M.; Pal, Sharmistha; Kung, Patrick; Kim, Seongsin Margaret

2017-09-01

In this article, recent progress and development of terahertz chiral metamaterials including stereometamaterials are thoroughly reviewed. This review mainly focuses on the fundamental principles of design and arrangement of meta-atoms in metamaterials exhibiting chirality with various asymmetry and symmetry and 2D and 3D configuration. Related optical and propagation properties in chiral metamaterials, such as optical activity, circular dichroism, and negative refraction for each different chiral metamaterials, are compared and investigated. Finally, comparison between chiral metamaterials with stereometamaterials in terms of the polarization selective operation along with the similarity and the distinction is addressed as well.

Colliding Stellar Wind Models with Orbital Motion

NASA Astrophysics Data System (ADS)

Wilkin, Francis P.; O'Connor, Brendan

2018-01-01

We present thin-shell models for the collision between two ballistic stellar winds, including orbital motion.The stellar orbits are assumed circular, so that steady-state solutions exist in the rotating frame, where we include centrifugal and Coriolis forces. Exact solutions for the pre-shock winds are incorporated. Here we discuss 2-D model results for equal wind momentum-loss rates, although we allow for the winds to have distinct speeds and mass loss rates. For these unequal wind conditions, we obtain a clear violation of skew-symmetry, despite equal momentum loss rates, due to the Coriolis force.

Photometric properties of Titan's surface from Cassini VIMS: Relevance to titan's hemispherical albedo dichotomy and surface stability

USGS Publications Warehouse

Nelson, R.M.; Brown, R.H.; Hapke, B.W.; Smythe, W.D.; Kamp, L.; Boryta, M.D.; Leader, F.; Baines, K.H.; Bellucci, G.; Bibring, J.-P.; Buratti, B.J.; Capaccioni, F.; Cerroni, P.; Clark, R.N.; Combes, M.; Coradini, A.; Cruikshank, D.P.; Drossart, P.; Formisano, V.; Jaumann, R.; Langevin, Y.; Matson, D.L.; McCord, T.B.; Mennella, V.; Nicholson, P.D.; Sicardy, B.; Sotin, Christophe

2006-01-01

The Visual and Infrared Mapping Spectrometer (VIMS) instrument on the Cassini Saturn Orbiter returned spectral imaging data as the spacecraft undertook six close encounters with Titan beginning 7 July, 2004. Three of these flybys each produced overlapping coverage of two distinct regions of Titan's surface. Twenty-four points were selected on approximately opposite hemispheres to serve as photometric controls. Six points were selected in each of four reflectance classes. On one hemisphere each control point was observed at three distinct phase angles. From the derived phase coefficients, preliminary normal reflectances were derived for each reflectance class. The normal reflectance of Titan's surface units at 2.0178 ??m ranged from 0.079 to 0.185 for the most absorbing to the most reflective units assuming no contribution from absorbing haze. When a modest haze contribution of ??=0.1 is considered these numbers increase to 0.089-0.215. We find that the lowest three reflectance classes have comparable normal reflectance on either hemisphere. However, for the highest brightness class the normal reflectance is higher on the hemisphere encompassing longitude 14-65?? compared to the same high brightness class for the hemisphere encompassing 122-156?? longitude. We conclude that an albedo dichotomy observed in continental sized units on Titan is due not only to one unit having more areal coverage of reflective material than the other but the material on the brighter unit is intrinsically more reflective than the most reflective material on the other unit. This suggests that surface renewal processes are more widespread on Titan's more reflective units than on its less reflective units. We note that one of our photometric control points has increased in reflectance by 12% relative to the surrounding terrain from July of 2004 to April and May of 2005. Possible causes of this effect include atmospheric processes such as ground fog or orographic clouds; the suggestion of active volcanism cannot be ruled out. Several interesting circular features which resembled impact craters were identified on Titan's surface at the time of the initial Titan flyby in July of 2004. We traced photometric profiles through two of these candidate craters and attempted to fit these profiles to the photometric properties expected from model depressions. We find that the best-fit attempt to model these features as craters requires that they be unrealistically deep, approximately 70 km deep. We conclude that despite their appearance, these circular features are not craters, however, the possibility that they are palimpsests cannot be ruled out. We used two methods to test for the presence of vast expanses of liquids on Titan's surface that had been suggested to resemble oceans. Specular reflection of sunlight would be indicative of widespread liquids on the surface; we found no evidence of this. A large liquid body should also show uniformity in photometric profile; we found the profiles to be highly variable. The lack of specular reflection and the high photometric variability in the profiles across candidate oceans is inconsistent with the presence of vast expanses of flat-lying liquids on Titan's surface. While liquid accumulation may be present as small, sub-pixel-sized bodies, or in areas of the surface which still remain to be observed by VIMS, the presence of large ocean-sized accumulations of liquids can be ruled out. The Cassini orbital tour offers the opportunity for VIMS to image the same parts of Titan's surface repeatedly at many different illumination and observation geometries. This creates the possibility of understanding the properties of Titan's atmosphere and haze by iteratively adapting models to create a best fit to the surface reflectance properties. ?? 2006 Elsevier Ltd. All rights reserved.

Classification of health webpages as expert and non expert with a reduced set of cross-language features.

PubMed

Grabar, Natalia; Krivine, Sonia; Jaulent, Marie-Christine

2007-10-11

Making the distinction between expert and non expert health documents can help users to select the information which is more suitable for them, according to whether they are familiar or not with medical terminology. This issue is particularly important for the information retrieval area. In our work we address this purpose through stylistic corpus analysis and the application of machine learning algorithms. Our hypothesis is that this distinction can be performed on the basis of a small number of features and that such features can be language and domain independent. The used features were acquired in source corpus (Russian language, diabetes topic) and then tested on target (French language, pneumology topic) and source corpora. These cross-language features show 90% precision and 93% recall with non expert documents in source language; and 85% precision and 74% recall with expert documents in target language.

Electromagnetic scattering and radiation from microstrip patch antennas and spirals residing in a cavity

NASA Technical Reports Server (NTRS)

Volakis, J. L.; Gong, J.; Alexanian, A.; Woo, A.

1992-01-01

A new hybrid method is presented for the analysis of the scattering and radiation by conformal antennas and arrays comprised of circular or rectangular elements. In addition, calculations for cavity-backed spiral antennas are given. The method employs a finite element formulation within the cavity and the boundary integral (exact boundary condition) for terminating the mesh. By virtue of the finite element discretization, the method has no restrictions on the geometry and composition of the cavity or its termination. Furthermore, because of the convolutional nature of the boundary integral and the inherent sparseness of the finite element matrix, the storage requirement is kept very low at O(n). These unique features of the method have already been exploited in other scattering applications and have permitted the analysis of large-size structures with remarkable efficiency. In this report, we describe the method's formulation and implementation for circular and rectangular patch antennas in different superstrate and substrate configurations which may also include the presence of lumped loads and resistive sheets/cards. Also, various modelling approaches are investigated and implemented for characterizing a variety of feed structures to permit the computation of the input impedance and radiation pattern. Many computational examples for rectangular and circular patch configurations are presented which demonstrate the method's versatility, modeling capability and accuracy.

Estimating statistical isotropy violation in CMB due to non-circular beam and complex scan in minutes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pant, Nidhi; Das, Santanu; Mitra, Sanjit

Mild, unavoidable deviations from circular-symmetry of instrumental beams along with scan strategy can give rise to measurable Statistical Isotropy (SI) violation in Cosmic Microwave Background (CMB) experiments. If not accounted properly, this spurious signal can complicate the extraction of other SI violation signals (if any) in the data. However, estimation of this effect through exact numerical simulation is computationally intensive and time consuming. A generalized analytical formalism not only provides a quick way of estimating this signal, but also gives a detailed understanding connecting the leading beam anisotropy components to a measurable BipoSH characterisation of SI violation. In this paper,more » we provide an approximate generic analytical method for estimating the SI violation generated due to a non-circular (NC) beam and arbitrary scan strategy, in terms of the Bipolar Spherical Harmonic (BipoSH) spectra. Our analytical method can predict almost all the features introduced by a NC beam in a complex scan and thus reduces the need for extensive numerical simulation worth tens of thousands of CPU hours into minutes long calculations. As an illustrative example, we use WMAP beams and scanning strategy to demonstrate the easability, usability and efficiency of our method. We test all our analytical results against that from exact numerical simulations.« less

Inquiry style interactive virtual experiments: a case on circular motion

NASA Astrophysics Data System (ADS)

Zhou, Shaona; Han, Jing; Pelz, Nathaniel; Wang, Xiaojun; Peng, Liangyu; Xiao, Hua; Bao, Lei

2011-11-01

Interest in computer-based learning, especially in the use of virtual reality simulations is increasing rapidly. While there are good reasons to believe that technologies have the potential to improve teaching and learning, how to utilize the technology effectively in teaching specific content difficulties is challenging. To help students develop robust understandings of correct physics concepts, we have developed interactive virtual experiment simulations that have the unique feature of enabling students to experience force and motion via an analogue joystick, allowing them to feel the applied force and simultaneously see its effects. The simulations provide students learning experiences that integrate both scientific representations and low-level sensory cues such as haptic cues under a single setting. In this paper, we introduce a virtual experiment module on circular motion. A controlled study has been conducted to evaluate the impact of using this virtual experiment on students' learning of force and motion in the context of circular motion. The results show that the interactive virtual experiment method is preferred by students and is more effective in helping students grasp the physics concepts than the traditional education method such as problem-solving practices. Our research suggests that well-developed interactive virtual experiments can be useful tools in teaching difficult concepts in science.

Multiple scattering and stop band characteristics of flexural waves on a thin plate with circular holes

NASA Astrophysics Data System (ADS)

Wang, Zuowei; Biwa, Shiro

2018-03-01

A numerical procedure is proposed for the multiple scattering analysis of flexural waves on a thin plate with circular holes based on the Kirchhoff plate theory. The numerical procedure utilizes the wave function expansion of the exciting as well as scattered fields, and the boundary conditions at the periphery of holes are incorporated as the relations between the expansion coefficients of exciting and scattered fields. A set of linear algebraic equations with respect to the wave expansion coefficients of the exciting field alone is established by the numerical collocation method. To demonstrate the applicability of the procedure, the stop band characteristics of flexural waves are analyzed for different arrangements and concentrations of circular holes on a steel plate. The energy transmission spectra of flexural waves are shown to capture the detailed features of the stop band formation of regular and random arrangements of holes. The increase of the concentration of holes is found to shift the dips of the energy transmission spectra toward higher frequencies as well as deepen them. The hexagonal hole arrangement can form a much broader stop band than the square hole arrangement for flexural wave transmission. It is also demonstrated that random arrangements of holes make the transmission spectrum more complicated.

The affirmation of self: a new perspective on the immune system.

PubMed

Stewart, John; Coutinho, Antonio

2004-01-01

The fundamental concepts of autopoiesis, which emphasize the circular organization underlying both living organisms and cognition, have been criticized on the grounds that since they are conceived as a tight logical chain of definitions and implications, it is often not clear whether they are indeed a scientific theory or rather just a potential scientific vocabulary of doubtful utility to working scientists. This article presents the deployment of the concepts of autopoiesis in the field of immunology, a discipline where working biologists themselves spontaneously have long had recourse to "cognitive" metaphors: "recognition"; a "repertoire" of recognized molecular shapes; "learning" and "memory"; and, most striking of all, a "self versus non-self" distinction. It is shown that in immunology, the concepts of autopoiesis can be employed to generate clear novel hypotheses, models demonstrating these ideas, testable predictions, and novel therapeutic procedures. Epistemologically, it is shown that the self-non-self distinction, while quite real, is misleadingly named. When a real mechanism for generating this distinction is identified, it appears that the actual operational distinction is between (a) a sufficiently numerous set of initial antigens, present from the start of ontogeny, in conditions that allow for their participation in the construction of the system's organization and operation, and (b) single antigens that are first presented to the system after two successive phases of maturation. To call this a self-non-self distinction obscures the issue by presupposing what it ought to be the job of scientific investigation to explain.

The deep muscular plexus of the pig duodenum: a histochemical and ultrastructural study with special reference to the interstitial cells.

PubMed

Henry, M; Porcher, C; Julé, Y

1998-06-10

The aim of the present study was to describe the deep muscular plexus of the pig duodenum and to characterize its cellular components. Numerous nerve varicosities have been detected in the deep muscular plexus using anti-synaptophysin antibodies. Nerve fibres were also detected here in the outer circular muscle layer, whereas no nerve fibres were observed in the inner circular muscle layer. In the deep muscular plexus, nerve fibres projected to interstitial cells which were characterized at the ultrastructural level. The interstitial cells were of two kinds: the interstitial fibroblastic-like cells (FLC) and the interstitial dense cells (IDC), both of which were interposed between nerve fibres and smooth muscle cells. The FLC were characterized by their elongated bipolar shape, the lack of basal lamina, a well-developed endoplasmic reticulum, a Golgi apparatus, and intermediate filaments. They were closely apposed to axon terminals containing small clear synaptic vesicles and/or dense-cored vesicles. They were frequently connected to each other and to smooth muscle cells of the inner and outer circular layer by desmosomes and more rarely by gap junctions. The IDC are myoid-like cells. They had a stellate appearance and were characterized by a dense cell body, numerous caveolae, and a discontinuous basal lamina. The IDC were always closely apposed to nerve fibres and were connected to smooth muscle cells by desmosomes and small gap junctions. The present results show the unique pattern of cellular organization of the deep muscular plexus of the pig small intestine. They suggest that the interstitial cells in the deep muscular plexus are involved in the integration and transmission of nervous inputs from myenteric neurons to the inner and outer circular muscle layers. The clear-cut distinction observed here between the two types of interstitial cells (fibroblastic and myoid-like) suggests that the interstitial cells of each type may also be involved in some other specific activity, which still remains to be determined.

Onset of a Large Ejective Solar Eruption from a Typical Coronal-jet-base Field Configuration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joshi, Navin Chandra; Magara, Tetsuya; Moon, Yong-Jae

Utilizing multiwavelength observations and magnetic field data from the Solar Dynamics Observatory ( SDO )/Atmospheric Imaging Assembly (AIA), SDO /Helioseismic and Magnetic Imager (HMI), the Geostationary Operational Environmental Satellite ( GOES ), and RHESSI , we investigate a large-scale ejective solar eruption of 2014 December 18 from active region NOAA 12241. This event produced a distinctive “three-ribbon” flare, having two parallel ribbons corresponding to the ribbons of a standard two-ribbon flare, and a larger-scale third quasi-circular ribbon offset from the other two. There are two components to this eruptive event. First, a flux rope forms above a strong-field polarity inversionmore » line and erupts and grows as the parallel ribbons turn on, grow, and spread apart from that polarity inversion line; this evolution is consistent with the mechanism of tether-cutting reconnection for eruptions. Second, the eruption of the arcade that has the erupting flux rope in its core undergoes magnetic reconnection at the null point of a fan dome that envelops the erupting arcade, resulting in formation of the quasi-circular ribbon; this is consistent with the breakout reconnection mechanism for eruptions. We find that the parallel ribbons begin well before (∼12 minutes) the onset of the circular ribbon, indicating that tether-cutting reconnection (or a non-ideal MHD instability) initiated this event, rather than breakout reconnection. The overall setup for this large-scale eruption (diameter of the circular ribbon ∼10{sup 5} km) is analogous to that of coronal jets (base size ∼10{sup 4} km), many of which, according to recent findings, result from eruptions of small-scale “minifilaments.” Thus these findings confirm that eruptions of sheared-core magnetic arcades seated in fan–spine null-point magnetic topology happen on a wide range of size scales on the Sun.« less

Interpersonal Subtypes Within Social Anxiety: The Identification of Distinct Social Features.

PubMed

Cooper, Danielle; Anderson, Timothy

2017-10-05

Although social anxiety disorder is defined by anxiety-related symptoms, little research has focused on the interpersonal features of social anxiety. Prior studies (Cain, Pincus, & Grosse Holtforth, 2010; Kachin, Newman, & Pincus, 2001) identified distinct subgroups of socially anxious individuals' interpersonal circumplex problems that were blends of agency and communion, and yet inconsistencies remain. We predicted 2 distinct interpersonal subtypes would exist for individuals with high social anxiety, and that these social anxiety subtypes would differ on empathetic concern, paranoia, received peer victimization, perspective taking, and emotional suppression. From a sample of 175 undergraduate participants, 51 participants with high social anxiety were selected as above a clinical cutoff on the social phobia scale. Cluster analyses identified 2 interpersonal subtypes of socially anxious individuals: low hostility-high submissiveness (Cluster 1) and high hostility-high submissiveness (Cluster 2). Cluster 1 reported higher levels of empathetic concern, lower paranoia, less peer victimization, and lower emotional suppression compared to Cluster 2. There were no differences between subtypes on perspective taking or cognitive reappraisal. Findings are consistent with an interpersonal conceptualization of social anxiety, and provide evidence of distinct social features between these subtypes. Findings have implications for the etiology, classification, and treatment of social anxiety.

Feature Statistics Modulate the Activation of Meaning during Spoken Word Processing

ERIC Educational Resources Information Center

Devereux, Barry J.; Taylor, Kirsten I.; Randall, Billi; Geertzen, Jeroen; Tyler, Lorraine K.

2016-01-01

Understanding spoken words involves a rapid mapping from speech to conceptual representations. One distributed feature-based conceptual account assumes that the statistical characteristics of concepts' features--the number of concepts they occur in ("distinctiveness/sharedness") and likelihood of co-occurrence ("correlational…

Feature Statistics Modulate the Activation of Meaning During Spoken Word Processing.

PubMed

Devereux, Barry J; Taylor, Kirsten I; Randall, Billi; Geertzen, Jeroen; Tyler, Lorraine K

2016-03-01

Understanding spoken words involves a rapid mapping from speech to conceptual representations. One distributed feature-based conceptual account assumes that the statistical characteristics of concepts' features--the number of concepts they occur in (distinctiveness/sharedness) and likelihood of co-occurrence (correlational strength)--determine conceptual activation. To test these claims, we investigated the role of distinctiveness/sharedness and correlational strength in speech-to-meaning mapping, using a lexical decision task and computational simulations. Responses were faster for concepts with higher sharedness, suggesting that shared features are facilitatory in tasks like lexical decision that require access to them. Correlational strength facilitated responses for slower participants, suggesting a time-sensitive co-occurrence-driven settling mechanism. The computational simulation showed similar effects, with early effects of shared features and later effects of correlational strength. These results support a general-to-specific account of conceptual processing, whereby early activation of shared features is followed by the gradual emergence of a specific target representation. Copyright © 2015 The Authors. Cognitive Science published by Cognitive Science Society, Inc.

Integrative and distinctive coding of visual and conceptual object features in the ventral visual stream

PubMed Central

Douglas, Danielle; Newsome, Rachel N; Man, Louisa LY

2018-01-01

A significant body of research in cognitive neuroscience is aimed at understanding how object concepts are represented in the human brain. However, it remains unknown whether and where the visual and abstract conceptual features that define an object concept are integrated. We addressed this issue by comparing the neural pattern similarities among object-evoked fMRI responses with behavior-based models that independently captured the visual and conceptual similarities among these stimuli. Our results revealed evidence for distinctive coding of visual features in lateral occipital cortex, and conceptual features in the temporal pole and parahippocampal cortex. By contrast, we found evidence for integrative coding of visual and conceptual object features in perirhinal cortex. The neuroanatomical specificity of this effect was highlighted by results from a searchlight analysis. Taken together, our findings suggest that perirhinal cortex uniquely supports the representation of fully specified object concepts through the integration of their visual and conceptual features. PMID:29393853

Dual pathology of corticobasal degeneration and Parkinson's disease in a patient with clinical features of progressive supranuclear palsy.

PubMed

Mooney, Tomin; Tampiyappa, Anthony; Robertson, Thomas; Grimley, Rohan; Burke, Chris; Ng, Kenneth; Patrikios, Peter

2011-01-01

Corticobasal degeneration and Parkinson's disease are pathologically distinct disorders with unique histological and biochemical features of a tauopathy and a-synucleinopathy respectively. We report the first case of co-occurrence of these pathologies in the same patient. Convergence of such distinctly separate neuropathology in the same brain highlights the need for extensive brain banking and further research in supporting the hypothesis that tauopathies and a-synucleinopathies might share common pathogenic mechanisms.

Mind the Microgap in Iridescent Cellulose Nanocrystal Films.

PubMed

Fernandes, Susete N; Almeida, Pedro L; Monge, Nuno; Aguirre, Luis E; Reis, Dennys; de Oliveira, Cristiano L P; Neto, António M F; Pieranski, Pawel; Godinho, Maria H

2017-01-01

A new photonic structure is produced from cellulose nanocrystal iridescent films reflecting both right and left circularly polarized light. Micrometer-scale planar gaps perpendicular to the films' cross-section between two different left-handed films' cholesteric domains are impregnated with a nematic liquid crystal. This photonic feature is reversibly tuned by the application of an electric field or a temperature variation. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Deracemization of bilirubin as the marker of the chirality of micellar aggregates.

PubMed

Sorrenti, Alessandro; Altieri, Barbara; Ceccacci, Francesca; Di Profio, Pietro; Germani, Raimondo; Giansanti, Luisa; Savelli, Gianfranco; Mancini, Giovanna

2012-01-01

The deracemization of bilirubin in micellar aggregates of structurally correlated chiral surfactants was studied by circular dichroism experiments and exploited as the marker of the expression of chirality of the aggregates. The obtained results suggest that the hydrophobic interactions control the transfer of chirality from the monomers to the aggregates, and that different regions of the same aggregate might feature opposite enantiorecognition capabilities. Copyright © 2011 Wiley-Liss, Inc.

Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom.

PubMed

Tiwari, Sandeep; Jamal, Syed Babar; Oliveira, Leticia Castro; Clermont, Dominique; Bizet, Chantal; Mariano, Diego; de Carvalho, Paulo Vinicius Sanches Daltro; Souza, Flavia; Pereira, Felipe Luiz; de Castro Soares, Siomar; Guimarães, Luis C; Dorella, Fernanda; Carvalho, Alex; Leal, Carlos; Barh, Debmalya; Figueiredo, Henrique; Hassan, Syed Shah; Azevedo, Vasco; Silva, Artur

2016-08-11

In this work, we describe a set of features of Corynebacterium auriscanis CIP 106629 and details of the draft genome sequence and annotation. The genome comprises a 2.5-Mbp-long single circular genome with 1,797 protein-coding genes, 5 rRNA, 50 tRNA, and 403 pseudogenes, with a G+C content of 58.50%. Copyright © 2016 Tiwari et al.

DIAC object recognition system

NASA Astrophysics Data System (ADS)

Buurman, Johannes

1992-03-01

This paper describes the object recognition system used in an intelligent robot cell. It is used to recognize and estimate pose and orientation of parts as they enter the cell. The parts are mostly metal and consist of polyhedral and cylindrical shapes. The system uses feature-based stereo vision to acquire a wireframe of the observed part. Features are defined as straight lines and ellipses, which lead to a wireframe of straight lines and circular arcs (the latter using a new algorithm). This wireframe is compared to a number of wire frame models obtained from the CAD database. Experimental results show that image processing hardware and parallelization may add considerably to the speed of the system.

ARC-1979-A79-7097

NASA Image and Video Library

1979-07-08

Range : 85,000 kilometers (53,000 miles) This photo of Jupiter's satellite Ganymede shows ancient cratered terrain. A variety of impact craters of different ages are shown. The brightest craters are the youngest. The ejecta blankets fade with age. The center shows a bright patch that represents the rebounding of the floor of the crater. The dirty ice has lost all topography except for faint circular patterns. Also shown are the 'Callisto type' curved troughs and ridges that mark an ancient enormous impact basin. The basin itself has been destroyed by later geologic processes. Only the ring features are preserved on the ancient surface. Near the bottom of the picture, these curved features are trumcated by the younger grooved terrain.

Some Registral Features of Matrimonial Advertisement in Indian English

ERIC Educational Resources Information Center

Mehrotra, R. R.

1975-01-01

Examines these distinct registral features of matrimonial newspaper advertisements in English in India: incongruity, deletion of preposition, miscellaneous deletions, two-word sentence, new abbreviations, registral confusion, stylistic variation. (RM)

Role of depletion on the dynamics of a diffusing forager

NASA Astrophysics Data System (ADS)

Bénichou, O.; Chupeau, M.; Redner, S.

2016-09-01

We study the dynamics of a starving random walk in general spatial dimension d. This model represents an idealized description for the fate of an unaware forager whose motion is not affected by the presence or absence of resources. The forager depletes its environment by consuming resources and dies if it wanders too long without finding food. In the exactly solvable case of one dimension, we explicitly derive the average lifetime of the walk and the distribution for the number of distinct sites visited by the walk at the instant of starvation. We also give a heuristic derivation for the averages of these two quantities. We tackle the complex but ecologically relevant case of two dimensions by an approximation in which the depleted zone is assumed to always be circular and which grows incrementally each time the walk reaches the edge of this zone. Within this framework, we derive a lower bound for the scaling of the average lifetime and number of distinct sites visited at starvation. We also determine the asymptotic distribution of the number of distinct sites visited at starvation. Finally, we solve the case of high spatial dimensions within a mean-field approach.

Spectral domain optical coherence tomography with extended depth-of-focus by aperture synthesis

NASA Astrophysics Data System (ADS)

Bo, En; Liu, Linbo

2016-10-01

We developed a spectral domain optical coherence tomography (SD-OCT) with an extended depth-of-focus (DOF) by synthetizing aperture. For a designated Gaussian-shape light source, the lateral resolution was determined by the numerical aperture (NA) of the objective lens and can be approximately maintained over the confocal parameter, which was defined as twice the Rayleigh range. However, the DOF was proportional to the square of the lateral resolution. Consequently, a trade-off existed between the DOF and lateral resolution, and researchers had to weigh and judge which was more important for their research reasonably. In this study, three distinct optical apertures were obtained by imbedding a circular phase spacer in the sample arm. Due to the optical path difference between three distinct apertures caused by the phase spacer, three images were aligned with equal spacing along z-axis vertically. By correcting the optical path difference (OPD) and defocus-induced wavefront curvature, three images with distinct depths were coherently summed together. This system digitally refocused the sample tissue and obtained a brand new image with higher lateral resolution over the confocal parameter when imaging the polystyrene calibration beads.

Positive–Negative Asymmetry in the Evaluations of Political Candidates. The Role of Features of Similarity and Affect in Voter Behavior

PubMed Central

Falkowski, Andrzej; Jabłońska, Magdalena

2018-01-01

In this study we followed the extension of Tversky’s research about features of similarity with its application to open sets. Unlike the original closed-set model in which a feature was shifted between a common and a distinctive set, we investigated how addition of new features and deletion of existing features affected similarity judgments. The model was tested empirically in a political context and we analyzed how positive and negative changes in a candidate’s profile affect the similarity of the politician to his or her ideal and opposite counterpart. The results showed a positive–negative asymmetry in comparison judgments where enhancing negative features (distinctive for an ideal political candidate) had a greater effect on judgments than operations on positive (common) features. However, the effect was not observed for comparisons to a bad politician. Further analyses showed that in the case of a negative reference point, the relationship between similarity judgments and voting intention was mediated by the affective evaluation of the candidate. PMID:29535663

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.

PubMed

Bolleman, Jerven T; Mungall, Christopher J; Strozzi, Francesco; Baran, Joachim; Dumontier, Michel; Bonnal, Raoul J P; Buels, Robert; Hoehndorf, Robert; Fujisawa, Takatomo; Katayama, Toshiaki; Cock, Peter J A

2016-06-13

Nucleotide and protein sequence feature annotations are essential to understand biology on the genomic, transcriptomic, and proteomic level. Using Semantic Web technologies to query biological annotations, there was no standard that described this potentially complex location information as subject-predicate-object triples. We have developed an ontology, the Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned "omics" areas. Using the same data format to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types. The genome browser JBrowse is used to demonstrate accessing multiple SPARQL endpoints to display genomic feature annotations, as well as protein annotations from UniProt mapped to genomic locations. Our ontology allows users to uniformly describe - and potentially merge - sequence annotations from multiple sources. Data sources using FALDO can prospectively be retrieved using federalised SPARQL queries against public SPARQL endpoints and/or local private triple stores.

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

DOE PAGES

Bolleman, Jerven T.; Mungall, Christopher J.; Strozzi, Francesco; ...

2016-06-13

Nucleotide and protein sequence feature annotations are essential to understand biology on the genomic, transcriptomic, and proteomic level. Using Semantic Web technologies to query biological annotations, there was no standard that described this potentially complex location information as subject-predicate-object triples. In this paper, we have developed an ontology, the Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas. Using the same data formatmore » to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types. The genome browser JBrowse is used to demonstrate accessing multiple SPARQL endpoints to display genomic feature annotations, as well as protein annotations from UniProt mapped to genomic locations. Our ontology allows users to uniformly describe – and potentially merge – sequence annotations from multiple sources. Finally, data sources using FALDO can prospectively be retrieved using federalised SPARQL queries against public SPARQL endpoints and/or local private triple stores.« less

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bolleman, Jerven T.; Mungall, Christopher J.; Strozzi, Francesco

Nucleotide and protein sequence feature annotations are essential to understand biology on the genomic, transcriptomic, and proteomic level. Using Semantic Web technologies to query biological annotations, there was no standard that described this potentially complex location information as subject-predicate-object triples. In this paper, we have developed an ontology, the Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas. Using the same data formatmore » to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types. The genome browser JBrowse is used to demonstrate accessing multiple SPARQL endpoints to display genomic feature annotations, as well as protein annotations from UniProt mapped to genomic locations. Our ontology allows users to uniformly describe – and potentially merge – sequence annotations from multiple sources. Finally, data sources using FALDO can prospectively be retrieved using federalised SPARQL queries against public SPARQL endpoints and/or local private triple stores.« less

Ultrasound waiting lists: rational queue or extended capacity?

PubMed

Brasted, Christopher

2008-06-01

The features and issues regarding clinical waiting lists in general and general ultrasound waiting lists in particular are reviewed, and operational aspects of providing a general ultrasound service are also discussed. A case study is presented describing a service improvement intervention in a UK NHS hospital's ultrasound department, from which arises requirements for a predictive planning model for an ultrasound waiting list. In the course of this, it becomes apparent that a booking system is a more appropriate way of describing the waiting list than a conventional queue. Distinctive features are identified from the literature and the case study as the basis for a predictive model, and a discrete event simulation model is presented which incorporates the distinctive features.

Stickler Syndrome

MedlinePlus

... Children who have Stickler syndrome often have distinctive facial features — prominent eyes, a small nose with a scooped ... develop ear infections than are children with normal facial features. Deafness. Hearing loss may worsen with time and ...

Imaging the Buried Chicxulub Crater with Gravity Gradients and Cenotes

NASA Astrophysics Data System (ADS)

Hildebrand, A. R.; Pilkington, M.; Halpenny, J. F.; Ortiz-Aleman, C.; Chavez, R. E.; Urrutia-Fucugauchi, J.; Connors, M.; Graniel-Castro, E.; Camara-Zi, A.; Vasquez, J.

1995-09-01

Differing interpretations of the Bouguer gravity anomaly over the Chicxulub crater, Yucatan Peninsula, Mexico, have yielded diameter estimates of 170 to 320 km. Knowing the crater's size is necessary to quantify the lethal perturbations to the Cretaceous environment associated with its formation. The crater's size (and internal structure) is revealed by the horizontal gradient of the Bouguer gravity anomaly over the structure, and by mapping the karst features of the Yucatan region. To improve our resolution of the crater's gravity signature we collected additional gravity measurements primarily along radial profiles, but also to fill in previously unsurveyed areas. Horizontal gradient analysis of Bouguer gravity data objectively highlights the lateral density contrasts of the impact lithologies and suppresses regional anomalies which may obscure the gravity signature of the Chicxulub crater lithologies. This gradient technique yields a striking circular structure with at least 6 concentric gradient features between 25 and 85 km radius. These features are most distinct in the southwest probably because of denser sampling of the gravity field. Our detailed profiles detected an additional feature and steeper gradients (up to 5 mGal/km) than the original survey. We interpret the outer four gradient maxima to represent concentric faults in the crater's zone of slumping as is also revealed by seismic reflection data. The inner two probably represent the margin of the central uplift and the peak ring and or collapsed transient cavity. Radial gradients in the SW quadrant over the inferred ~40 km-diameter central uplift (4) may represent structural "puckering" as revealed at eroded terrestrial craters. Gradient features related to regional gravity highs and lows are visible outside the crater, but no concentric gradient features are apparent at distances > 90 km radius. The marginal gradient features may be modelled by slump faults as observed in large complex craters on the other terrestrial planets. A modeled fault of 1.5 km displacement (slightly slumped block exterior and impact breccia interior) reproduces the steepest gradient feature. This model is incompatible with models that place these gradient features inside the collapsed transient cavity. Locations of the karst features of the northern Yucatan region were digitized from 1:50,000 topographic maps, which show most but not all the water-filled sinkholes (locally known as cenotes). A prominent ring of cenotes is visible over the crater that is spatially correlated to the outer steep gravity gradient feature. The mapped cenotes constitute an unbiased sampling of the region's karst surface features of >50 m diameter. The gradient maximum and the cenote ring both meander with amplitudes of up to 2 km. The wiggles in the gradient feature and the cenote distribution probably correspond to the "scalloping" observed at the headwall of terraces in large complex craters. A second partial cenote ring exterior to the southwest side of the main ring corresponds to a less-prominent gravity gradient feature. No concentric structure is observable in the distribution of karst features at radii >90 km. The cenote ring is bounded by the outer peripheral steep gradient feature and must be related to it; the slump faults must have been reactivated sufficiently to create fracturing in the overlying and much younger sediment. Long term subsidence, as found at other terrestrial craters is a possible mechanism for the reactivation. Such long term subsidence may be caused by differential compaction or thermal relaxation. Elevations acquired during gravity surveys show that the cenote ring also corresponds to a topographic low along some of its length that probably reflects preferential erosion.

Hue distinctiveness overrides category in determining performance in multiple object tracking.

PubMed

Sun, Mengdan; Zhang, Xuemin; Fan, Lingxia; Hu, Luming

2018-02-01

The visual distinctiveness between targets and distractors can significantly facilitate performance in multiple object tracking (MOT), in which color is a feature that has been commonly used. However, the processing of color can be more than "visual." Color is continuous in chromaticity, while it is commonly grouped into discrete categories (e.g., red, green). Evidence from color perception suggested that color categories may have a unique role in visual tasks independent of its chromatic appearance. Previous MOT studies have not examined the effect of chromatic and categorical distinctiveness on tracking separately. The current study aimed to reveal how chromatic (hue) and categorical distinctiveness of color between the targets and distractors affects tracking performance. With four experiments, we showed that tracking performance was largely facilitated by the increasing hue distance between the target set and the distractor set, suggesting that perceptual grouping was formed based on hue distinctiveness to aid tracking. However, we found no color categorical effect, because tracking performance was not significantly different when the targets and distractors were from the same or different categories. It was concluded that the chromatic distinctiveness of color overrides category in determining tracking performance, suggesting a dominant role of perceptual feature in MOT.

Ash Shutbah: A possible impact structure in Saudi Arabia

NASA Astrophysics Data System (ADS)

Gnos, Edwin; Hofmann, Beda A.; Schmieder, Martin; Al-Wagdani, Khalid; Mahjoub, Ayman; Al-Solami, Abdulaziz A.; Habibullah, Siddiq N.; Matter, Albert; Alwmark, Carl

2014-10-01

We have investigated the Ash Shutbah circular structure in central Saudi Arabia (21°37'N 45°39'E) using satellite imagery, field mapping, thin-section petrography, and X-ray diffraction of collected samples. The approximately 2.1 km sized structure located in flat-lying Jurassic Tuwaiq Mountain Limestone has been nearly peneplained by erosional processes. Satellite and structural data show a central area consisting of Dhruma Formation sandstones with steep bedding and tight folds plunging radially outward. Open folding occurs in displaced, younger Tuwaiq Mountain Limestone Formation blocks surrounding the central area, but is absent outside the circular structure. An approximately 60 cm thick, unique folded and disrupted orthoquartzitic sandstone marker bed occurring in the central area of the structure is found 140 m deeper in undisturbed escarpment outcrops located a few hundred meters west of the structure. With exception of a possible concave shatter cone found in the orthoquartzite of the central area, other diagnostic shock features are lacking. Some quartz-rich sandstones from the central area show pervasive fracturing of quartz grains with common concussion fractures. This deformation was followed by an event of quartz dissolution and calcite precipitation consistent with local sea- or groundwater heating. The combination of central stratigraphic uplift of 140 m, concussion features in discolored sandstone, outward-dipping concentric folds in the central area, deformation restricted to the rocks of the ring structure, a complex circular structure of 2.1 km diameter that appears broadly consistent with what one would expect from an impact structure in sedimentary targets, and a possible shatter cone all point to an impact origin of the Ash Shutbah structure. In fact, the Ash Shutbah structure appears to be a textbook example of an eroded, complex impact crater located in flat-lying sedimentary rocks, where the undisturbed stratigraphic section can be studied in escarpment outcrops in the vicinity of the structure.

Distinct phenotype clusters in childhood inflammatory brain diseases: implications for diagnostic evaluation.

PubMed

Cellucci, Tania; Tyrrell, Pascal N; Twilt, Marinka; Sheikh, Shehla; Benseler, Susanne M

2014-03-01

To identify distinct clusters of children with inflammatory brain diseases based on clinical, laboratory, and imaging features at presentation, to assess which features contribute strongly to the development of clusters, and to compare additional features between the identified clusters. A single-center cohort study was performed with children who had been diagnosed as having an inflammatory brain disease between June 1, 1989 and December 31, 2010. Demographic, clinical, laboratory, neuroimaging, and histologic data at diagnosis were collected. K-means cluster analysis was performed to identify clusters of patients based on their presenting features. Associations between the clusters and patient variables, such as diagnoses, were determined. A total of 147 children (50% female; median age 8.8 years) were identified: 105 with primary central nervous system (CNS) vasculitis, 11 with secondary CNS vasculitis, 8 with neuronal antibody syndromes, 6 with postinfectious syndromes, and 17 with other inflammatory brain diseases. Three distinct clusters were identified. Paresis and speech deficits were the most common presenting features in cluster 1. Children in cluster 2 were likely to present with behavior changes, cognitive dysfunction, and seizures, while those in cluster 3 experienced ataxia, vision abnormalities, and seizures. Lesions seen on T2/fluid-attenuated inversion recovery sequences of magnetic resonance imaging were common in all clusters, but unilateral ischemic lesions were more prominent in cluster 1. The clusters were associated with specific diagnoses and diagnostic test results. Children with inflammatory brain diseases presented with distinct phenotypical patterns that are associated with specific diagnoses. This information may inform the development of a diagnostic classification of childhood inflammatory brain diseases and suggest that specific pathways of diagnostic evaluation are warranted. Copyright © 2014 by the American College of Rheumatology.

Cytologic separation of branchial cleft cyst from metastatic cystic squamous cell carcinoma: A multivariate analysis of nineteen cytomorphologic features.

PubMed

Layfield, Lester J; Esebua, Magda; Schmidt, Robert L

2016-07-01

The separation of branchial cleft cysts from metastatic cystic squamous cell carcinomas in adults can be clinically and cytologically challenging. Diagnostic accuracy for separation is reported to be as low as 75% prompting some authors to recommend frozen section evaluation of suspected branchial cleft cysts before resection. We evaluated 19 cytologic features to determine which were useful in this distinction. Thirty-three cases (21 squamous carcinoma and 12 branchial cysts) of histologically confirmed cystic lesions of the lateral neck were graded for the presence or absence of 19 cytologic features by two cytopathologists. The cytologic features were analyzed for agreement between observers and underwent multivariate analysis for correlation with the diagnosis of carcinoma. Interobserver agreement was greatest for increased nuclear/cytoplasmic (N/C) ratio, pyknotic nuclei, and irregular nuclear membranes. Recursive partitioning analysis showed increased N/C ratio, small clusters of cells, and irregular nuclear membranes were the best discriminators. The distinction of branchial cleft cysts from cystic squamous cell carcinoma is cytologically difficult. Both digital image analysis and p16 testing have been suggested as aids in this separation, but analysis of cytologic features remains the main method for diagnosis. In an analysis of 19 cytologic features, we found that high nuclear cytoplasmic ratio, irregular nuclear membranes, and small cell clusters were most helpful in their distinction. Diagn. Cytopathol. 2016;44:561-567. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Intensity Accents in French 2 Year Olds' Speech.

ERIC Educational Resources Information Center

Allen, George D.

The acoustic features and functions of accentuation in French are discussed, and features of accentuation in the speech of French 2-year-olds are explored. The four major acoustic features used to signal accentual distinctions are fundamental frequency of voicing, duration of segments and syllables, intensity of segments and syllables, and…

Histological features of the gastrointestinal tract of wild Indonesian shortfin eel, Anguilla bicolor bicolor (McClelland, 1844), captured in Peninsular Malaysia.

PubMed

Nasruddin, Nurrul Shaqinah; Azmai, Mohammad Noor Amal; Ismail, Ahmad; Saad, Mohd Zamri; Daud, Hassan Mohd; Zulkifli, Syaizwan Zahmir

2014-01-01

This study was conducted to record the histological features of the gastrointestinal tract of wild Indonesian shortfin eel, Anguilla bicolor bicolor (McClelland, 1844), captured in Peninsular Malaysia. The gastrointestinal tract was segmented into the oesophagus, stomach, and intestine. Then, the oesophagus was divided into five (first to fifth), the stomach into two (cardiac and pyloric), and the intestine into four segments (anterior, intermediate, posterior, and rectum) for histological examinations. The stomach had significantly taller villi and thicker inner circular muscles compared to the intestine and oesophagus. The lamina propria was thickest in stomach, significantly when compared with oesophagus, but not with the intestine. However, the intestine showed significantly thicker outer longitudinal muscle while gastric glands were observed only in the stomach. The histological features were closely associated with the functions of the different segments of the gastrointestinal tract. In conclusion, the histological features of the gastrointestinal tract of A. b. bicolor are consistent with the feeding habit of a carnivorous fish.

Research of infrared laser based pavement imaging and crack detection

NASA Astrophysics Data System (ADS)

Hong, Hanyu; Wang, Shu; Zhang, Xiuhua; Jing, Genqiang

2013-08-01

Road crack detection is seriously affected by many factors in actual applications, such as some shadows, road signs, oil stains, high frequency noise and so on. Due to these factors, the current crack detection methods can not distinguish the cracks in complex scenes. In order to solve this problem, a novel method based on infrared laser pavement imaging is proposed. Firstly, single sensor laser pavement imaging system is adopted to obtain pavement images, high power laser line projector is well used to resist various shadows. Secondly, the crack extraction algorithm which has merged multiple features intelligently is proposed to extract crack information. In this step, the non-negative feature and contrast feature are used to extract the basic crack information, and circular projection based on linearity feature is applied to enhance the crack area and eliminate noise. A series of experiments have been performed to test the proposed method, which shows that the proposed automatic extraction method is effective and advanced.

X-Ray Polarization from High Mass X-Ray Binaries

NASA Technical Reports Server (NTRS)

Kallman, T.; Dorodnitsyn, A.; Blondin, J.

2015-01-01

X-ray astronomy allows study of objects which may be associated with compact objects, i.e. neutron stars or black holes, and also may contain strong magnetic fields. Such objects are categorically non-spherical, and likely non-circular when projected on the sky. Polarization allows study of such geometric effects, and X-ray polarimetry is likely to become feasible for a significant number of sources in the future. A class of potential targets for future X-ray polarization observations is the high mass X-ray binaries (HMXBs), which consist of a compact object in orbit with an early type star. In this paper we show that X-ray polarization from HMXBs has a distinct signature which depends on the source inclination and orbital phase. The presence of the X-ray source displaced from the star creates linear polarization even if the primary wind is spherically symmetric whenever the system is viewed away from conjunction. Direct X-rays dilute this polarization whenever the X-ray source is not eclipsed; at mid-eclipse the net polarization is expected to be small or zero if the wind is circularly symmetric around the line of centers. Resonance line scattering increases the scattering fraction, often by large factors, over the energy band spanned by resonance lines. Real winds are not expected to be spherically symmetric, or circularly symmetric around the line of centers, owing to the combined effects of the compact object gravity and ionization on the wind hydrodynamics. A sample calculation shows that this creates polarization fractions ranging up to tens of percent at mid-eclipse.

Generation of Covalently Closed Circular DNA of Hepatitis B Viruses via Intracellular Recycling Is Regulated in a Virus Specific Manner

PubMed Central

Köck, Josef; Rösler, Christine; Zhang, Jing-Jing; Blum, Hubert E.; Nassal, Michael; Thoma, Christian

2010-01-01

Persistence of hepatitis B virus (HBV) infection requires covalently closed circular (ccc)DNA formation and amplification, which can occur via intracellular recycling of the viral polymerase-linked relaxed circular (rc) DNA genomes present in virions. Here we reveal a fundamental difference between HBV and the related duck hepatitis B virus (DHBV) in the recycling mechanism. Direct comparison of HBV and DHBV cccDNA amplification in cross-species transfection experiments showed that, in the same human cell background, DHBV but not HBV rcDNA converts efficiently into cccDNA. By characterizing the distinct forms of HBV and DHBV rcDNA accumulating in the cells we find that nuclear import, complete versus partial release from the capsid and complete versus partial removal of the covalently bound polymerase contribute to limiting HBV cccDNA formation; particularly, we identify genome region-selectively opened nuclear capsids as a putative novel HBV uncoating intermediate. However, the presence in the nucleus of around 40% of completely uncoated rcDNA that lacks most if not all of the covalently bound protein strongly suggests a major block further downstream that operates in the HBV but not DHBV recycling pathway. In summary, our results uncover an unexpected contribution of the virus to cccDNA formation that might help to better understand the persistence of HBV infection. Moreover, efficient DHBV cccDNA formation in human hepatoma cells should greatly facilitate experimental identification, and possibly inhibition, of the human cell factors involved in the process. PMID:20824087

Multiple Isoforms of ANRIL in Melanoma Cells: Structural Complexity Suggests Variations in Processing.

PubMed

Sarkar, Debina; Oghabian, Ali; Bodiyabadu, Pasani K; Joseph, Wayne R; Leung, Euphemia Y; Finlay, Graeme J; Baguley, Bruce C; Askarian-Amiri, Marjan E

2017-06-27

The long non-coding RNA ANRIL , antisense to the CDKN2B locus, is transcribed from a gene that encompasses multiple disease-associated polymorphisms. Despite the identification of multiple isoforms of ANRIL , expression of certain transcripts has been found to be tissue-specific and the characterisation of ANRIL transcripts remains incomplete. Several functions have been associated with ANRIL . In our judgement, studies on ANRIL functionality are premature pending a more complete appreciation of the profusion of isoforms. We found differential expression of ANRIL exons, which indicates that multiple isoforms exist in melanoma cells. In addition to linear isoforms, we identified circular forms of ANRIL ( circANRIL ). Further characterisation of circANR IL in two patient-derived metastatic melanoma cell lines (NZM7 and NZM37) revealed the existence of a rich assortment of circular isoforms. Moreover, in the two melanoma cell lines investigated, the complements of circANRIL isoforms were almost completely different. Novel exons were also discovered. We also found the family of linear ANRIL was enriched in the nucleus, whilst the circular isoforms were enriched in the cytoplasm and they differed markedly in stability. With respect to the variable processing of circANRIL species, bioinformatic analysis indicated that intronic Arthrobacter luteus (Alu) restriction endonuclease inverted repeats and exon skipping were not involved in selection of back-spliced exon junctions. Based on our findings, we hypothesise that " ANRIL " has wholly distinct dual sets of functions in melanoma. This reveals the dynamic nature of the locus and constitutes a basis for investigating the functions of ANRIL in melanoma.

Design Features for Linguistically-Mediated Meaning Construction: The Relative Roles of the Linguistic and Conceptual Systems in Subserving the Ideational Function of Language

PubMed Central

Evans, Vyvyan

2016-01-01

Recent research in language and cognitive science proposes that the linguistic system evolved to provide an “executive” control system on the evolutionarily more ancient conceptual system (e.g., Barsalou et al., 2008; Evans, 2009, 2015a,b; Bergen, 2012). In short, the claim is that embodied representations in the linguistic system interface with non-linguistic representations in the conceptual system, facilitating rich meanings, or simulations, enabling linguistically mediated communication. In this paper I build on these proposals by examining the nature of what I identify as design features for this control system. In particular, I address how the ideational function of language—our ability to deploy linguistic symbols to convey meanings of great complexity—is facilitated. The central proposal of this paper is as follows. The linguistic system of any given language user, of any given linguistic system—spoken or signed—facilitates access to knowledge representation—concepts—in the conceptual system, which subserves this ideational function. In the most general terms, the human meaning-making capacity is underpinned by two distinct, although tightly coupled representational systems: the conceptual system and the linguistic system. Each system contributes to meaning construction in qualitatively distinct ways. This leads to the first design feature: given that the two systems are representational—they are populated by semantic representations—the nature and function of the representations are qualitatively different. This proposed design feature I term the bifurcation in semantic representation. After all, it stands to reason that if a linguistic system has a different function, vis-à-vis the conceptual system, which is of far greater evolutionary antiquity, then the semantic representations will be complementary, and as such, qualitatively different, reflecting the functional distinctions of the two systems, in collectively giving rise to meaning. I consider the nature of these qualitatively distinct representations. And second, language itself is adapted to the conceptual system—the semantic potential—that it marshals in the meaning construction process. Hence, a linguistic system itself exhibits a bifurcation, in terms of the symbolic resources at its disposal. This design feature I dub the birfucation in linguistic organization. As I shall argue, this relates to two distinct reference strategies available for symbolic encoding in language: what I dub words-to-world reference and words-to-words reference. In slightly different terms, this design feature of language amounts to a distinction between a lexical subsystem, and a grammatical subsystem. PMID:26925000

Design Features for Linguistically-Mediated Meaning Construction: The Relative Roles of the Linguistic and Conceptual Systems in Subserving the Ideational Function of Language.

PubMed

Evans, Vyvyan

2016-01-01

Recent research in language and cognitive science proposes that the linguistic system evolved to provide an "executive" control system on the evolutionarily more ancient conceptual system (e.g., Barsalou et al., 2008; Evans, 2009, 2015a,b; Bergen, 2012). In short, the claim is that embodied representations in the linguistic system interface with non-linguistic representations in the conceptual system, facilitating rich meanings, or simulations, enabling linguistically mediated communication. In this paper I build on these proposals by examining the nature of what I identify as design features for this control system. In particular, I address how the ideational function of language-our ability to deploy linguistic symbols to convey meanings of great complexity-is facilitated. The central proposal of this paper is as follows. The linguistic system of any given language user, of any given linguistic system-spoken or signed-facilitates access to knowledge representation-concepts-in the conceptual system, which subserves this ideational function. In the most general terms, the human meaning-making capacity is underpinned by two distinct, although tightly coupled representational systems: the conceptual system and the linguistic system. Each system contributes to meaning construction in qualitatively distinct ways. This leads to the first design feature: given that the two systems are representational-they are populated by semantic representations-the nature and function of the representations are qualitatively different. This proposed design feature I term the bifurcation in semantic representation. After all, it stands to reason that if a linguistic system has a different function, vis-à-vis the conceptual system, which is of far greater evolutionary antiquity, then the semantic representations will be complementary, and as such, qualitatively different, reflecting the functional distinctions of the two systems, in collectively giving rise to meaning. I consider the nature of these qualitatively distinct representations. And second, language itself is adapted to the conceptual system-the semantic potential-that it marshals in the meaning construction process. Hence, a linguistic system itself exhibits a bifurcation, in terms of the symbolic resources at its disposal. This design feature I dub the birfucation in linguistic organization. As I shall argue, this relates to two distinct reference strategies available for symbolic encoding in language: what I dub words-to-world reference and words-to-words reference. In slightly different terms, this design feature of language amounts to a distinction between a lexical subsystem, and a grammatical subsystem.

Prader-Willi Syndrome

ERIC Educational Resources Information Center

Kundert, Deborah King

2008-01-01

Although known for its distinctive food-related behaviors, Prader-Willi syndrome is a multisystem disorder with genetic, developmental, and behavioral features. Two separate and distinct eating disorders are noted: initial feeding difficulties and failure to thrive, and later overeating. Additional outcomes observed with this disorder include…

Compressive-sampling-based positioning in wireless body area networks.

PubMed

Banitalebi-Dehkordi, Mehdi; Abouei, Jamshid; Plataniotis, Konstantinos N

2014-01-01

Recent achievements in wireless technologies have opened up enormous opportunities for the implementation of ubiquitous health care systems in providing rich contextual information and warning mechanisms against abnormal conditions. This helps with the automatic and remote monitoring/tracking of patients in hospitals and facilitates and with the supervision of fragile, elderly people in their own domestic environment through automatic systems to handle the remote drug delivery. This paper presents a new modeling and analysis framework for the multipatient positioning in a wireless body area network (WBAN) which exploits the spatial sparsity of patients and a sparse fast Fourier transform (FFT)-based feature extraction mechanism for monitoring of patients and for reporting the movement tracking to a central database server containing patient vital information. The main goal of this paper is to achieve a high degree of accuracy and resolution in the patient localization with less computational complexity in the implementation using the compressive sensing theory. We represent the patients' positions as a sparse vector obtained by the discrete segmentation of the patient movement space in a circular grid. To estimate this vector, a compressive-sampling-based two-level FFT (CS-2FFT) feature vector is synthesized for each received signal from the biosensors embedded on the patient's body at each grid point. This feature extraction process benefits in the combination of both short-time and long-time properties of the received signals. The robustness of the proposed CS-2FFT-based algorithm in terms of the average positioning error is numerically evaluated using the realistic parameters in the IEEE 802.15.6-WBAN standard in the presence of additive white Gaussian noise. Due to the circular grid pattern and the CS-2FFT feature extraction method, the proposed scheme represents a significant reduction in the computational complexity, while improving the level of the resolution and the localization accuracy when compared to some classical CS-based positioning algorithms.

An evaluation of the suitability of ERTS data for the purposes of petroleum exploration

NASA Technical Reports Server (NTRS)

Collins, R. J., Jr. (Principal Investigator); Mccown, F. P.; Stonis, L. P.; Petzel, G.

1973-01-01

The author has identified the following significant results. ERTS-1 imagery seems to be good to excellent for reconnaissance level investigations of large sedimentary basins such as the Anadarko Basin. Many lithologic boundaries, and geomorphic features, and linear features inferred to be indicative of geologic structure are visible in the imagery. This imagery in conjunction with high altitude photography seems to be useful as a tool for intermediate level geologic exploration. Several types of crudely circular anomalous features, such as geomorphic/structural anomalies, hazy areas and tonal anomalies, are identifiable in the imagery. There seems to be a strong correlation between the geomorphic/structural and hazy anomalies and known structurally controlled oil and gas fields. The features recognizable on ERTS-1 imagery and their ease of recognition vary from area to area even in imagery acquired at the same time under essentially uniform atmospheric conditions. Repeated coverage is exceedingly valuable in geologic applications. One time complete coverage even for the various seasons does not reveal all the features that ERTS-1 can reveal.

Feature-based attention is functionally distinct from relation-based attention: The double dissociation between color-based capture and color-relation-based capture of attention.

PubMed

Du, Feng; Jiao, Jun

2016-04-01

The present study used a spatial blink task and a cuing task to examine the boundary between feature-based capture and relation-based capture. Feature-based capture occurs when distractors match the target feature such as target color. The occurrence of relation-based capture is contingent upon the feature relation between target and distractor (e.g., color relation). The results show that color distractors that match the target-nontarget color relation do not consistently capture attention when they appear outside of the attentional window, but distractors appearing outside the attentional window that match the target color consistently capture attention. In contrast, color distractors that best match the target-nontarget color relation but not the target color, are more likely to capture attention when they appear within the attentional window. Consistently, color cues that match the target-nontarget color relation produce a cuing effect when they appear within the attentional window, while target-color matched cues do not. Such a double dissociation between color-based capture and color-relation-based capture indicates functionally distinct mechanisms for these 2 types of attentional selection. This also indicates that the spatial blink task and the uninformative cuing task are measuring distinctive aspects of involuntary attention. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Complex posttraumatic stress disorder: The need to consolidate a distinct clinical syndrome or to reevaluate features of psychiatric disorders following interpersonal trauma?

PubMed

Giourou, Evangelia; Skokou, Maria; Andrew, Stuart P; Alexopoulou, Konstantina; Gourzis, Philippos; Jelastopulu, Eleni

2018-03-22

Complex posttraumatic stress disorder (Complex PTSD) has been recently proposed as a distinct clinical entity in the WHO International Classification of Diseases, 11 th version, due to be published, two decades after its first initiation. It is described as an enhanced version of the current definition of PTSD, with clinical features of PTSD plus three additional clusters of symptoms namely emotional dysregulation, negative self-cognitions and interpersonal hardship, thus resembling the clinical features commonly encountered in borderline personality disorder (BPD). Complex PTSD is related to complex trauma which is defined by its threatening and entrapping context, generally interpersonal in nature. In this manuscript, we review the current findings related to traumatic events predisposing the above-mentioned disorders as well as the biological correlates surrounding them, along with their clinical features. Furthermore, we suggest that besides the present distinct clinical diagnoses (PTSD; Complex PTSD; BPD), there is a cluster of these comorbid disorders, that follow a continuum of trauma and biological severity on a spectrum of common or similar clinical features and should be treated as such. More studies are needed to confirm or reject this hypothesis, particularly in clinical terms and how they correlate to clinical entities' biological background, endorsing a shift from the phenomenologically only classification of psychiatric disorders towards a more biologically validated classification.

A complete three-dimensional reconstruction of the myoanatomy of Loricifera: comparative morphology of an adult and a Higgins larva stage.

PubMed

Neves, Ricardo C; Bailly, Xavier; Leasi, Francesca; Reichert, Heinrich; Sørensen, Martin V; Kristensen, Reinhardt M

2013-04-15

Loricifera is a group of small, marine animals, with undetermined phylogenetic relationships within Ecdysozoa (molting protostome animals). Despite their well-known external morphology, data on the internal anatomy of loriciferans are still incomplete. Aiming to increase the knowledge of this enigmatic phylum, we reconstruct for the first time the three-dimensional myoanatomy of loriciferans. Adult Nanaloricus sp. and the Higgins larva of Armorloricus elegans were investigated with cytochemical labeling techniques and CLSM. We discuss our findings with reference to other loriciferan species and recently established phylogenies. The somatic musculature of both adult and larval stages is very complex and includes several muscles arranged in three orientations: circular, transverse and longitudinal. In adult Nanaloricus sp., the introvert is characterized by a net-like muscular arrangement, which is composed of five thin circular fibers crossed by several (up to 30) thin longitudinal fibers with bifurcated anterior ends. Two sets of muscles surround the pre-pharyngeal armature: 6 buccal tube retractors arranged 3 × 2 in a conical shaped structure, and 8 mouth cone retractors. Additionally, a thick, circular muscle marks the neck region and a putative anal sphincter is the posteriormost myoanatomical feature. In the Higgins larva of A. elegans, two circular muscles are distinguished anteriorly in the introvert: a dorsal semicircular fiber and a thin ring muscle. The posteriormost region of the body is characterized by an anal sphincter and a triangular muscle. Based on the currently available knowledge, the myoanatomical bodyplan of adult loriciferans includes: (i) 8 mouth cone retractors, (ii) a pharynx bulb composed of transversal fibers arranged radially, (iii) circular muscles of the head and neck, (iv) internal muscles of the spinoscalids, (v) longitudinal muscles spanning all body regions, and (vi) transverse (circular) muscles in the abdomen. Concerning the Higgins larva, the muscle subsets assigned to its myoanatomical ground pattern are the (i) longitudinal retractors of the mouth cone, introvert, and abdomen, (ii) abdominal transverse muscles, and (iii) a pharynx bulb composed of transverse, radial fibers. In a comparison with phyla traditionally regarded as phylogenetically close, our data show that the overall myoanatomy of Loricifera is more similar to Kinorhyncha and Nematomorpha than to Priapulida. However, the head musculature of all these groups is very similar, which supports homology of their introverts and head morphology.

A complete three-dimensional reconstruction of the myoanatomy of Loricifera: comparative morphology of an adult and a Higgins larva stage

PubMed Central

2013-01-01

Introduction Loricifera is a group of small, marine animals, with undetermined phylogenetic relationships within Ecdysozoa (molting protostome animals). Despite their well-known external morphology, data on the internal anatomy of loriciferans are still incomplete. Aiming to increase the knowledge of this enigmatic phylum, we reconstruct for the first time the three-dimensional myoanatomy of loriciferans. Adult Nanaloricus sp. and the Higgins larva of Armorloricus elegans were investigated with cytochemical labeling techniques and CLSM. We discuss our findings with reference to other loriciferan species and recently established phylogenies. Results The somatic musculature of both adult and larval stages is very complex and includes several muscles arranged in three orientations: circular, transverse and longitudinal. In adult Nanaloricus sp., the introvert is characterized by a net-like muscular arrangement, which is composed of five thin circular fibers crossed by several (up to 30) thin longitudinal fibers with bifurcated anterior ends. Two sets of muscles surround the pre-pharyngeal armature: 6 buccal tube retractors arranged 3 × 2 in a conical shaped structure, and 8 mouth cone retractors. Additionally, a thick, circular muscle marks the neck region and a putative anal sphincter is the posteriormost myoanatomical feature. In the Higgins larva of A. elegans, two circular muscles are distinguished anteriorly in the introvert: a dorsal semicircular fiber and a thin ring muscle. The posteriormost region of the body is characterized by an anal sphincter and a triangular muscle. Conclusions Based on the currently available knowledge, the myoanatomical bodyplan of adult loriciferans includes: (i) 8 mouth cone retractors, (ii) a pharynx bulb composed of transversal fibers arranged radially, (iii) circular muscles of the head and neck, (iv) internal muscles of the spinoscalids, (v) longitudinal muscles spanning all body regions, and (vi) transverse (circular) muscles in the abdomen. Concerning the Higgins larva, the muscle subsets assigned to its myoanatomical ground pattern are the (i) longitudinal retractors of the mouth cone, introvert, and abdomen, (ii) abdominal transverse muscles, and (iii) a pharynx bulb composed of transverse, radial fibers. In a comparison with phyla traditionally regarded as phylogenetically close, our data show that the overall myoanatomy of Loricifera is more similar to Kinorhyncha and Nematomorpha than to Priapulida. However, the head musculature of all these groups is very similar, which supports homology of their introverts and head morphology. PMID:23587092

Magnetization reversal in circular vortex dots of small radius.

PubMed

Goiriena-Goikoetxea, M; Guslienko, K Y; Rouco, M; Orue, I; Berganza, E; Jaafar, M; Asenjo, A; Fernández-Gubieda, M L; Fernández Barquín, L; García-Arribas, A

2017-08-10

We present a detailed study of the magnetic behavior of Permalloy (Ni 80 Fe 20 alloy) circular nanodots with small radii (30 nm and 70 nm) and different thicknesses (30 nm or 50 nm). Despite the small size of the dots, the measured hysteresis loops manifestly display the features of classical vortex behavior with zero remanence and lobes at high magnetic fields. This is remarkable because the size of the magnetic vortex core is comparable to the dot diameter, as revealed by magnetic force microscopy and micromagnetic simulations. The dot ground states are close to the border of the vortex stability and, depending on the dot size, the magnetization distribution combines attributes of the typical vortex, single domain states or even presents features resembling magnetic skyrmions. An analytical model of the dot magnetization reversal, accounting for the large vortex core size, is developed to explain the observed behavior, providing a rather good agreement with the experimental results. The study extends the understanding of magnetic nanodots beyond the classical vortex concept (where the vortex core spins have a negligible influence on the magnetic behavior) and can therefore be useful for improving emerging spintronic applications, such as spin-torque nano-oscillators. It also delimits the feasibility of producing a well-defined vortex configuration in sub-100 nm dots, enabling the intracellular magneto-mechanical actuation for biomedical applications.

Extracting contours of oval-shaped objects by Hough transform and minimal path algorithms

NASA Astrophysics Data System (ADS)

Tleis, Mohamed; Verbeek, Fons J.

2014-04-01

Circular and oval-like objects are very common in cell and micro biology. These objects need to be analyzed, and to that end, digitized images from the microscope are used so as to come to an automated analysis pipeline. It is essential to detect all the objects in an image as well as to extract the exact contour of each individual object. In this manner it becomes possible to perform measurements on these objects, i.e. shape and texture features. Our measurement objective is achieved by probing contour detection through dynamic programming. In this paper we describe a method that uses Hough transform and two minimal path algorithms to detect contours of (ovoid-like) objects. These algorithms are based on an existing grey-weighted distance transform and a new algorithm to extract the circular shortest path in an image. The methods are tested on an artificial dataset of a 1000 images, with an F1-score of 0.972. In a case study with yeast cells, contours from our methods were compared with another solution using Pratt's figure of merit. Results indicate that our methods were more precise based on a comparison with a ground-truth dataset. As far as yeast cells are concerned, the segmentation and measurement results enable, in future work, to retrieve information from different developmental stages of the cell using complex features.

Sensitivity of 4-Year-Olds to Featural and Second-Order Relational Changes in Face Distinctiveness

ERIC Educational Resources Information Center

McKone, Elinor; Boyer, Barbara L.

2006-01-01

Sensitivity to adult ratings of facial distinctiveness (how much an individual stands out in a crowd) has been demonstrated previously in children age 5 years or older. Experiment 1 extended this result to 4-year-olds using a "choose the more distinctive face" task. Children's patterns of choice across item pairs also correlated well with those of…

Buried and Visible Impact Basin Distribution on Mars: Comparison with Magnetization, Gravity and Crustal Thickness Models

NASA Technical Reports Server (NTRS)

Frey, Herbert

2003-01-01

The large population of buried impact basins found in MOLA elevation data on Mars provides compelling evidence for a pre-Noachian crust below the oldest visible Early Noachian surface units, and lowland crust below the younger plains that is Early Noachian in age, older than much of the visible highlands, but not as old as the buried pre-Noachian highlands. The large (D greater than 200 km) buried basins are suggested by Quasi-Circular Depressions (QCDs) that are not apparent in image data, and include features up to 3000 lun diameter in both the lowlands (Utopia) and highlands (a newly found "Ares Basin"). There are about a dozen QCDs larger than 1000 km diameter. We have placed these large features in a relative age sequence based on superimposed smaller QCD. Only the youngest and most obvious of these (Hellas, Argyre, Isidis) lack magnetic anomalies within their main rings. These all have an N(200) cumulative crater density of less than 2.5. Somewhat older lowland-making basins (Utopia, Chryse, Acidalia) with an N(200) age of approximately 3.0, have weak magnetic anomalies, and the oldest, most subdued basins (including Ares) with N(200) greater than 3.5 have many strong magnetic anomalies within their main ring. These older basins likely formed before the main magnetic field died. We have compared our inventory of large QCDs with the distribution of gravity anomalies and with a crustal thickness model which shows many roughly circular areas of thinner crust completely or partly surrounded by narrow regions of thicker crust. These have the structure expected for impact basins, and many of them do correspond to the visible or buried QCDs we previously identified. But there are cases where the crustal thickness feature is offset from the QCD found in topography alone, and there are also several, sometimes large examples of such features which do not coincide with QCDs previously identified. For example, we find several likely buried basins revealed in the crustal thickness data in the Arcadia and Amazonis regions which we did not previously identify, including several features in the 600-1200 km diameter range.

Ultra-narrow EIA spectra of 85Rb atom in a degenerate Zeeman multiplet system

NASA Astrophysics Data System (ADS)

Rehman, Hafeez Ur; Qureshi, Muhammad Mohsin; Noh, Heung-Ryoul; Kim, Jin-Tae

2015-05-01

Ultra-narrow EIA spectral features of thermal 85Rb atom with respect to coupling Rabi frequencies in a degenerate Zeeman multiplet system have been unraveled in the cases of same (σ+ -σ+ , π ∥ π) and orthogonal (σ+ -σ- , π ⊥ π)polarization configurations. The EIA signals with subnatural linewidth of ~ 100 kHz even in the cases of same circular and linear polarizations of coupling and probe laser have been obtained for the first time theoretically and experimentally. In weak coupling power limit of orthogonal polarization configurations, time-dependent transfer of coherence plays major role in the splitting of the EIA spectra while in strong coupling power, Mollow triplet-like mechanism due to strong power bring into broad split feature. The experimental ultra-narrow EIA features using one laser combined with an AOM match well with simulated spectra obtained by using generalized time-dependent optical Bloch equations.

ICAN: Integrated composites analyzer

NASA Technical Reports Server (NTRS)

Murthy, P. L. N.; Chamis, C. C.

1984-01-01

The ICAN computer program performs all the essential aspects of mechanics/analysis/design of multilayered fiber composites. Modular, open-ended and user friendly, the program can handle a variety of composite systems having one type of fiber and one matrix as constituents as well as intraply and interply hybrid composite systems. It can also simulate isotropic layers by considering a primary composite system with negligible fiber volume content. This feature is specifically useful in modeling thin interply matrix layers. Hygrothermal conditions and various combinations of in-plane and bending loads can also be considered. Usage of this code is illustrated with a sample input and the generated output. Some key features of output are stress concentration factors around a circular hole, locations of probable delamination, a summary of the laminate failure stress analysis, free edge stresses, microstresses and ply stress/strain influence coefficients. These features make ICAN a powerful, cost-effective tool to analyze/design fiber composite structures and components.

Initial evaluation of the geologic applications of ERTS-1 imagery for New Mexico

NASA Technical Reports Server (NTRS)

Vonderlinden, K.; Kottlowski, F. E.

1973-01-01

Coverage of approximately one-third of the test site, the state of New Mexico, had been received by January 31, 1973 and all of the images received were MSS products. Features noted during visual inspection of 91/2 x 91/2 prints include major structural forms, vegetation patterns, drainage patterns and outcrops of geologic formations having marked color contrasts. The Border Hills Structural Zone and the Y-O Structural Zone are prominently reflected in coverage of the Pecos Valley. A study of available maps and remote sensing material covering the Deming-Columbus area indicated that the limit of detection and the resolution of MSS products are not as good as those of aerial photographs, geologic maps, and manned-satellite photographs. The limit of detection of high contrast features on MSS prints in approximately 1000 feet or 300 meters for linear features and about 18 acres for roughly circular areas.

Preliminary investigation of two areas in New York State in terms of possible potential for hot dry rock geothermal energy. [Adirondack Mountains and Catskill Mountains

DOE Office of Scientific and Technical Information (OSTI.GOV)

Isachsen, Y.W.

1978-09-27

Two areas in New York State were studied in terms of possible long range potential for geothermal energy: the Adirondack Mountains which are undergoing contemporary doming, and an anomalous circular feature centered on Panther Mountain in the Catskill Mountains. The Adirondack Mountains constitute an anomalously large, domical uplift on the Appalachian foreland. The domical configuration of the area undergoing uplift, combined with subsidence at the northeastern perimeter of the dome, argues for a geothermal rather than glacioisostatic origin. A contemporary hot spot near the crust-mantle boundary is proposed as the mechanism of doming, based on analogy with uplifts of similarmore » dimensions elsewhere in the world, some of which have associated Tertiary volcanics. The lack of thermal springs in the area, or high heat flow in drill holes up to 370 m deep, indicates that the front of the inferred thermal pulse must be at some depth greater than 1 km. From isopach maps by Rickard (1969, 1973), it is clear that the present Adirondack dome did not come into existence until sometime after Late Devonian time. Strata younger than this are not present to provide further time stratigraphic refinement of this lower limit. However, the consequent radial drainage pattern in the Adirondacks suggests that the dome is a relatively young tectonic feature. Using arguments based on fixed hot spots in central Africa, and the movement of North American plate, Kevin Burke (Appendix I) suggests that the uplift may be less than 4 m.y. old.The other area of interest, the Panther Mountain circular feature in the Catskill Mountains, was studied using photogeology, gravity and magnetic profiling, gravity modeling, conventional field methods, and local shallow seismic refraction profiling.« less

Modeling Drosophila Positional Preferences in Open Field Arenas with Directional Persistence and Wall Attraction

PubMed Central

Soibam, Benjamin; Goldfeder, Rachel L.; Manson-Bishop, Claire; Gamblin, Rachel; Pletcher, Scott D.; Shah, Shishir; Gunaratne, Gemunu H.; Roman, Gregg W.

2012-01-01

In open field arenas, Drosophila adults exhibit a preference for arena boundaries over internal walls and open regions. Herein, we investigate the nature of this preference using phenomenological modeling of locomotion to determine whether local arena features and constraints on movement alone are sufficient to drive positional preferences within open field arenas of different shapes and with different internal features. Our model has two components: directional persistence and local wall force. In regions far away from walls, the trajectory is entirely characterized by a directional persistence probability, , for each movement defined by the step size, , and the turn angle, . In close proximity to walls, motion is computed from and a local attractive force which depends on the distance between the fly and points on the walls. The directional persistence probability was obtained experimentally from trajectories of wild type Drosophila in a circular open field arena and the wall force was computed to minimize the difference between the radial distributions from the model and Drosophila in the same circular arena. The two-component model for fly movement was challenged by comparing the positional preferences from the two-component model to wild type Drosophila in a variety of open field arenas. In most arenas there was a strong concordance between the two-component model and Drosophila. In more complex arenas, the model exhibits similar trends, but some significant differences were found. These differences suggest that there are emergent features within these complex arenas that have significance for the fly, such as potential shelter. Hence, the two-component model is an important step in defining how Drosophila interact with their environment. PMID:23071591

Distinctive Spectral Features of Exciton and Excimer States in the Ultrafast Electronic Deactivation of the Adenine Dinucleotide

NASA Astrophysics Data System (ADS)

Stuhldreier, Mayra C.; Röttger, Katharina; Temps, Friedrich

We report the observation by transient absorption spectroscopy of distinctive spectro-temporal signatures of delocalized exciton versus relaxed, weakly bound excimer states in the ultrafast electronic deactivation after UV photoexcitation of the adenine dinucleotide.

Isocoumarin derivatives from the endophytic fungus, Pestalotiopsis sp.

PubMed

Song, Ren-Yu; Wang, Xiao-Bing; Yin, Guo-Ping; Liu, Rui-Huan; Kong, Ling-Yi; Yang, Ming-Hua

2017-10-01

Five new isocoumarin derivatives, pestalactone A-C (1-3) and pestapyrone D-E (4-5), together with two known compounds (6-7) were isolated from the solid cultures of the endophytic fungus Pestalotiopsis sp. obtained from Photinia frasery. Their structures were mainly determined by extensive spectroscopic analysis, Mo 2 (OCOCH 3 ) 4 -induced electronic circular dichroism (ECD), and ECD calculation. Compounds 1 and 2 were rare isocoumarin derivatives and derived from distinctive polyketide pathways. Compound 3 exhibited potent antifungal activity against Candida glabrata (ATCC 90030) with an MIC 50 value of 3.49±0.21μg/mL. Copyright © 2017. Published by Elsevier B.V.

78 FR 16828 - Endangered and Threatened Wildlife and Plants; Status Review of the West Coast Distinct...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-19

...; biology and ecology; and habitat selection. (2) Information on the effects of potential threat factors... particular physical or biological features that are essential to the conservation of the species and where such physical or biological features are found; (c) Whether any of these features may require special...

Research on Formation of Microsatellite Communication with Genetic Algorithm

PubMed Central

Wu, Guoqiang; Bai, Yuguang; Sun, Zhaowei

2013-01-01

For the formation of three microsatellites which fly in the same orbit and perform three-dimensional solid mapping for terra, this paper proposes an optimizing design method of space circular formation order based on improved generic algorithm and provides an intersatellite direct spread spectrum communication system. The calculating equation of LEO formation flying satellite intersatellite links is guided by the special requirements of formation-flying microsatellite intersatellite links, and the transmitter power is also confirmed throughout the simulation. The method of space circular formation order optimizing design based on improved generic algorithm is given, and it can keep formation order steady for a long time under various absorb impetus. The intersatellite direct spread spectrum communication system is also provided. It can be found that, when the distance is 1 km and the data rate is 1 Mbps, the input wave matches preferably with the output wave. And LDPC code can improve the communication performance. The correct capability of (512, 256) LDPC code is better than (2, 1, 7) convolution code, distinctively. The design system can satisfy the communication requirements of microsatellites. So, the presented method provides a significant theory foundation for formation-flying and intersatellite communication. PMID:24078796

Research on formation of microsatellite communication with genetic algorithm.

PubMed

Wu, Guoqiang; Bai, Yuguang; Sun, Zhaowei

2013-01-01

For the formation of three microsatellites which fly in the same orbit and perform three-dimensional solid mapping for terra, this paper proposes an optimizing design method of space circular formation order based on improved generic algorithm and provides an intersatellite direct spread spectrum communication system. The calculating equation of LEO formation flying satellite intersatellite links is guided by the special requirements of formation-flying microsatellite intersatellite links, and the transmitter power is also confirmed throughout the simulation. The method of space circular formation order optimizing design based on improved generic algorithm is given, and it can keep formation order steady for a long time under various absorb impetus. The intersatellite direct spread spectrum communication system is also provided. It can be found that, when the distance is 1 km and the data rate is 1 Mbps, the input wave matches preferably with the output wave. And LDPC code can improve the communication performance. The correct capability of (512, 256) LDPC code is better than (2, 1, 7) convolution code, distinctively. The design system can satisfy the communication requirements of microsatellites. So, the presented method provides a significant theory foundation for formation-flying and intersatellite communication.

Ligand-field helical luminescence in a 2D ferromagnetic insulator

DOE PAGES

Seyler, Kyle L.; Zhong, Ding; Klein, Dahlia R.; ...

2017-12-04

Bulk chromium tri-iodide (CrI 3) has long been known as a layered van der Waals ferromagnet. However, its monolayer form was only recently isolated and confirmed to be a truly two-dimensional (2D) ferromagnet, providing a new platform for investigating light–matter interactions and magneto-optical phenomena in the atomically thin limit. Here in this paper, we report spontaneous circularly polarized photoluminescence in monolayer CrI 3 under linearly polarized excitation, with helicity determined by the monolayer magnetization direction. In contrast, the bilayer CrI 3 photoluminescence exhibits vanishing circular polarization, supporting the recently uncovered anomalous antiferromagnetic interlayer coupling in CrI 3 bilayers. Distinct frommore » the Wannier–Mott excitons that dominate the optical response in well-known 2D van der Waals semiconductors, our absorption and layer-dependent photoluminescence measurements reveal the importance of ligand-field and charge-transfer transitions to the optoelectronic response of atomically thin CrI 3. We attribute the photoluminescence to a parity-forbidden d–d transition characteristic of Cr 3+ complexes, which displays broad linewidth due to strong vibronic coupling and thickness-independent peak energy due to its localized molecular orbital nature.« less

Self-Powered Active Sensor with Concentric Topography of Piezoelectric Fibers

NASA Astrophysics Data System (ADS)

Fuh, Yiin Kuen; Huang, Zih Ming; Wang, Bo Sheng; Li, Shan Chien

2017-01-01

In this study, we demonstrated a flexible and self-powered sensor based on piezoelectric fibers in the diameter range of nano- and micro-scales. Our work is distinctively different from previous electrospinning research; we fabricated this apparatus precisely via near-field electrospinning which has a spectacular performance to harvest mechanical deformation in arbitrary direction and a novel concentrically circular topography. There are many piezoelectric devices based on electrospinning polymeric fibers. However, the fibers were mostly patterned in parallel lines and they could be actuated in limited direction only. To overcome this predicament, we re-arranged the parallel alignment into concentric circle pattern which made it possible to collect the mechanical energy whenever the deformation is along same axis or not. Despite the change of topography, the output voltage and current could still reach to 5 V and 400 nA, respectively, despite the mechanical deformation was from different direction. This new arbitrarily directional piezoelectric generator with concentrically circular topography (PGCT) allowed the piezoelectric device to harvest more mechanical energy than the one-directional alignment fiber-based devices, and this PGCT could perform even better output which promised more versatile and efficient using as a wearable electronics or sensor.

Self-Powered Active Sensor with Concentric Topography of Piezoelectric Fibers.

PubMed

Fuh, Yiin Kuen; Huang, Zih Ming; Wang, Bo Sheng; Li, Shan Chien

2017-12-01

In this study, we demonstrated a flexible and self-powered sensor based on piezoelectric fibers in the diameter range of nano- and micro-scales. Our work is distinctively different from previous electrospinning research; we fabricated this apparatus precisely via near-field electrospinning which has a spectacular performance to harvest mechanical deformation in arbitrary direction and a novel concentrically circular topography. There are many piezoelectric devices based on electrospinning polymeric fibers. However, the fibers were mostly patterned in parallel lines and they could be actuated in limited direction only. To overcome this predicament, we re-arranged the parallel alignment into concentric circle pattern which made it possible to collect the mechanical energy whenever the deformation is along same axis or not. Despite the change of topography, the output voltage and current could still reach to 5 V and 400 nA, respectively, despite the mechanical deformation was from different direction. This new arbitrarily directional piezoelectric generator with concentrically circular topography (PGCT) allowed the piezoelectric device to harvest more mechanical energy than the one-directional alignment fiber-based devices, and this PGCT could perform even better output which promised more versatile and efficient using as a wearable electronics or sensor.

Electrically tunable polarizer based on 2D orthorhombic ferrovalley materials

NASA Astrophysics Data System (ADS)

Shen, Xin-Wei; Tong, Wen-Yi; Gong, Shi-Jing; Duan, Chun-Gang

2018-03-01

The concept of ferrovalley materials has been proposed very recently. The existence of spontaneous valley polarization, resulting from ferromagnetism, in such hexagonal 2D materials makes nonvolatile valleytronic applications realizable. Here, we introduce a new member of ferrovalley family with orthorhombic lattice, i.e. monolayer group-IV monochalcogenides (GIVMs), in which the intrinsic valley polarization originates from ferroelectricity, instead of ferromagnetism. Combining the group theory analysis and first-principles calculations, we demonstrate that, different from the valley-selective circular dichroism in hexagonal lattice, linearly polarized optical selectivity for valleys exists in the new type of ferrovalley materials. On account of the distinctive property, a prototype of electrically tunable polarizer is realized. In the ferrovalley-based polarizer, a laser beam can be optionally polarized in x- or y-direction, depending on the ferrovalley state controlled by external electric fields. Such a device can be further optimized to emit circularly polarized radiation with specific chirality and to realize the tunability for operating wavelength. Therefore, we show that 2D orthorhombic ferrovalley materials are the promising candidates to provide an advantageous platform to realize the polarizer driven by electric means, which is of great importance in extending the practical applications of valleytronics.

Beyond reductionism: metabolic circularity as a guiding vision for a real biology of systems.

PubMed

Cornish-Bowden, Athel; Cárdenas, María Luz; Letelier, Juan-Carlos; Soto-Andrade, Jorge

2007-03-01

The definition of life has excited little interest among molecular biologists during the past half-century, and the enormous development in biology during that time has been largely based on an analytical approach in which all biological entities are studied in terms of their components, the process being extended to greater and greater detail without limit. The benefits of this reductionism are so obvious that they need no discussion, but there have been costs as well, and future advances, for example, for creating artificial life or for taking biotechnology beyond the level of tinkering, will need more serious attention to be given to the question of what makes a living organism living. According to Robert Rosen's theory of metabolism-replacement systems, the central idea missing from molecular biology is that of metabolic circularity, most evident from the obvious but commonly ignored fact that proteins are not given from outside but are products of metabolism, and thus metabolites. Among other consequences, this implies that the usual distinction between proteome and metabolome is conceptually artificial -- however useful it may be in practice -- as the proteome is part of the metabolome.

Dicer-2-Dependent Generation of Viral DNA from Defective Genomes of RNA Viruses Modulates Antiviral Immunity in Insects.

PubMed

Poirier, Enzo Z; Goic, Bertsy; Tomé-Poderti, Lorena; Frangeul, Lionel; Boussier, Jérémy; Gausson, Valérie; Blanc, Hervé; Vallet, Thomas; Loyd, Hyelee; Levi, Laura I; Lanciano, Sophie; Baron, Chloé; Merkling, Sarah H; Lambrechts, Louis; Mirouze, Marie; Carpenter, Susan; Vignuzzi, Marco; Saleh, Maria-Carla

2018-03-14

The RNAi pathway confers antiviral immunity in insects. Virus-specific siRNA responses are amplified via the reverse transcription of viral RNA to viral DNA (vDNA). The nature, biogenesis, and regulation of vDNA are unclear. We find that vDNA produced during RNA virus infection of Drosophila and mosquitoes is present in both linear and circular forms. Circular vDNA (cvDNA) is sufficient to produce siRNAs that confer partially protective immunity when challenged with a cognate virus. cvDNAs bear homology to defective viral genomes (DVGs), and DVGs serve as templates for vDNA and cvDNA synthesis. Accordingly, DVGs promote the amplification of vDNA-mediated antiviral RNAi responses in infected Drosophila. Furthermore, vDNA synthesis is regulated by the DExD/H helicase domain of Dicer-2 in a mechanism distinct from its role in siRNA generation. We suggest that, analogous to mammalian RIG-I-like receptors, Dicer-2 functions like a pattern recognition receptor for DVGs to modulate antiviral immunity in insects. Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

Optical manipulation of valley pseudospin

DOE PAGES

Ye, Ziliang; Sun, Dezheng; Heinz, Tony F.

2016-09-19

The coherent manipulation of spin and pseudospin underlies existing and emerging quantum technologies, including quantum communication and quantum computation. Valley polarization, associated with the occupancy of degenerate, but quantum mechanically distinct valleys in momentum space, closely resembles spin polarization and has been proposed as a pseudospin carrier for the future quantum electronics. Valley exciton polarization has been created in the transition metal dichalcogenide monolayers using excitation by circularly polarized light and has been detected both optically and electrically. In addition, the existence of coherence in the valley pseudospin has been identified experimentally. The manipulation of such valley coherence has, however,more » remained out of reach. In this paper, we demonstrate all-optical control of the valley coherence by means of the pseudomagnetic field associated with the optical Stark effect. Using below-bandgap circularly polarized light, we rotate the valley exciton pseudospin in monolayer WSe 2 on the femtosecond timescale. Both the direction and speed of the rotation can be manipulated optically by tuning the dynamic phase of excitons in opposite valleys. Finally, this study unveils the possibility of generation, manipulation, and detection of the valley pseudospin by coupling to photons.« less

Is It an Ant or a Butterfly? Convergent Evolution in the Mitochondrial Gene Order of Hymenoptera and Lepidoptera

PubMed Central

Babbucci, Massimiliano; Basso, Andrea; Scupola, Antonio; Patarnello, Tomaso; Negrisolo, Enrico

2014-01-01

Insect mitochondrial genomes (mtDNA) are usually double helical and circular molecules containing 37 genes that are encoded on both strands. The arrangement of the genes is not constant for all species, and produces distinct gene orders (GOs) that have proven to be diagnostic in defining clades at different taxonomic levels. In general, it is believed that distinct taxa have a very low chance of sharing identically arranged GOs. However, examples of identical, homoplastic local rearrangements occurring in distinct taxa do exist. In this study, we sequenced the complete mtDNAs of the ants Formica fusca and Myrmica scabrinodis (Formicidae, Hymenoptera) and compared their GOs with those of other Insecta. The GO of F. fusca was found to be identical to the GO of Dytrisia (the largest clade of Lepidoptera). This finding is the first documented case of an identical GO shared by distinct groups of Insecta, and it is the oldest known event of GO convergent evolution in animals. Both Hymenoptera and Lepidoptera acquired this GO early in their evolution. Using a phylogenetic approach combined with new bioinformatic tools, the chronological order of the evolutionary events that produced the diversity of the hymenopteran GOs was determined. Additionally, new local homoplastic rearrangements shared by distinct groups of insects were identified. Our study showed that local and global homoplasies affecting the insect GOs are more widespread than previously thought. Homoplastic GOs can still be useful for characterizing the various clades, provided that they are appropriately considered in a phylogenetic and taxonomic context. PMID:25480682

Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex

PubMed Central

Deitcher, Yair; Eyal, Guy; Kanari, Lida; Verhoog, Matthijs B; Atenekeng Kahou, Guy Antoine; Mansvelder, Huibert D; de Kock, Christiaan P J; Segev, Idan

2017-01-01

Abstract There have been few quantitative characterizations of the morphological, biophysical, and cable properties of neurons in the human neocortex. We employed feature-based statistical methods on a rare data set of 60 3D reconstructed pyramidal neurons from L2 and L3 in the human temporal cortex (HL2/L3 PCs) removed after brain surgery. Of these cells, 25 neurons were also characterized physiologically. Thirty-two morphological features were analyzed (e.g., dendritic surface area, 36 333 ± 18 157 μm2; number of basal trees, 5.55 ± 1.47; dendritic diameter, 0.76 ± 0.28 μm). Eighteen features showed a significant gradual increase with depth from the pia (e.g., dendritic length and soma radius). The other features showed weak or no correlation with depth (e.g., dendritic diameter). The basal dendritic terminals in HL2/L3 PCs are particularly elongated, enabling multiple nonlinear processing units in these dendrites. Unlike the morphological features, the active biophysical features (e.g., spike shapes and rates) and passive/cable features (e.g., somatic input resistance, 47.68 ± 15.26 MΩ, membrane time constant, 12.03 ± 1.79 ms, average dendritic cable length, 0.99 ± 0.24) were depth-independent. A novel descriptor for apical dendritic topology yielded 2 distinct classes, termed hereby as “slim-tufted” and “profuse-tufted” HL2/L3 PCs; the latter class tends to fire at higher rates. Thus, our morpho-electrotonic analysis shows 2 distinct classes of HL2/L3 PCs. PMID:28968789

A Sublimation Model for the Martian Polar Swiss-Cheese Features. Observational and Modeling Studies of the South Polar Residual Cap

NASA Technical Reports Server (NTRS)

Byrne, Shane; Ingersoll, Andrew P.

2002-01-01

In their pioneering work Leighton and Murray argued that the Mars atmosphere, which is 95 percent CO2 today, is controlled by vapor equilibrium with a much larger polar reservoir of solid CO2. Here we argue that the polar reservoir is small and cannot function as a long-term buffer to the more massive atmosphere. Our work is based on modeling the circular depressions (Swiss-cheese features) in the south polar cap. We argue that a solid CO2 layer approximately 8 meters thick is being etched away to reveal water ice underneath. Preliminary results from the THEMIS (Thermal Emission Imaging System) instrument seem to confirm our model.

(abstract) Venus Gravity Field

NASA Technical Reports Server (NTRS)

Konopliv, A. S.; Sjogren, W. L.

1995-01-01

A global gravity field model of Venus to degree and order 75 (5772 spherical harmonic coefficients) has been estimated from Doppler radio tracking of the orbiting spacecraft Pioneer Venus Orbiter (1979-1992) and Magellan (1990-1994). After the successful aerobraking of Magellan, a near circular polar orbit was attained and relatively uniform gravity field resolution (approximately 200 km) was obtained with formal uncertainties of a few milligals. Detailed gravity for several highland features are displayed as gravity contours overlaying colored topography. The positive correlation of typography with gravity is very high being unlike that of the Earth, Moon, and Mars. The amplitudes are Earth-like, but have significantly different gravity-topography ratios for different features. Global gravity, geoid, and isostatic anomaly maps as well as the admittance function are displayed.

Venus - Volcanic features in Atla Region

NASA Technical Reports Server (NTRS)

1991-01-01

This Magellan image from the Atla region of Venus shows several types of volcanic features and superimposed surface fractures. The area in the image is approximately 350 kilometers (217 miles) across, centered at 9 degrees south latitude, 199 degrees east longitude. Lava flows emanating from circular pits or linear fissures form flower-shaped patterns in several areas. A collapse depression approximately 20 kilometers by 10 kilometers (12 by 6 miles) near the center of the image is drained by a lava channel approximately 40 kilometers (25 miles) long. Numerous surface fractures and graben (linear valleys) criss-cross the volcanic deposits in north to northeast trends. The fractures are not buried by the lavas, indicating that the tectonic activity post-dates most of the volcanic activity.

Reanalysis of Clementine Bistatic Radar Data from the Lunar South Pole

NASA Technical Reports Server (NTRS)

Simpson, Richard A.; Tyler, G. Leonard

1998-01-01

On 9 April 1994 the Clementine spacecraft high-gain antenna was aimed toward the Moon's surface and the resulting 13-cm wavelength radio echoes were received on Earth. Using these data, we have found that the lunar surface generally follows a Lambertian bistatic scattering function sigma(sub 0) = K(sub D)cos(theta(sub i) with K(sub D) approx. 0.003 for the opposite (expected) sense of circular polarization and K(sub D) approx. 0.001 for the same (unexpected) sense. But there are important deviations-of up to 50% in some parts of the echo spectrum-from this simple form. Based on an earlier analysis of these same data, Nozette et al. claimed detection of an enhancement in echoes with right circular polarization from regions near the South Pole in a near-backscatter geometry. Such behavior would be consistent with presence of perhaps large quantities of water ice near the Pole. We have been unable to reproduce that result. Although we find weak suggestions of enhanced echoes at the time of South Pole backscatter, similar features are present at earlier and later times, adjacent frequencies, and in left circular polarization. If enhanced backscatter is present, it is not unique to the South Pole; if not unique to the Pole, then ice is less likely as an explanation for the enhancement.

Magnetic circular dichroism of thiolate-protected plasmonic gold nanoparticles: separating the effects of interband transitions and surface magnetoplasmon resonance

NASA Astrophysics Data System (ADS)

Shiratsu, Taisuke; Yao, Hiroshi

2016-10-01

Magneto-optical activity is demonstrated in thiolate-protected Au nanoparticles with magnetic circular dichroism (MCD) spectroscopy. The samples examined are decanethiolate-protected Au nanoparticles with the mean diameters ranging from 2.0 to 4.7 nm. The nanoparticles larger than 2.4 nm in diameter exhibit a derivative-like MCD signal, indicating the presence of two circular modes of surface magnetoplasmon, but the spectral shape is so asymmetric that its identification is rather difficult. This is due to the contribution of interband transitions occurring at around the localized surface plasmon resonance (LSPR) frequency. We then develop an efficient method to phenomenologically separate the effects of magnetoplasmonic intraband (= Drude) and interband transitions in the measured MCD spectra using an approximation that the optical response of the Au nanoparticle with a critical size (˜2.0 nm) for the disappearance of LSPR, which is also experimentally obtainable, is substantially dominated by the interband transitions. The consistency of the method is ensured for tiopronin-protected Au nanoparticles, and a very small bisignate magnetoplasmonic response hidden in the total MCD spectrum can be extracted. The practical advantage of the proposed method is that we can intuitively and effectively evaluate the characteristic features of the surface magnetoplasmon of thiolate-protected Au nanoparticles without performing complicated Mie or quasielectrostatic calculations.

Small Scale Gasification Application and Perspectives in Circular Economy

NASA Astrophysics Data System (ADS)

Klavins, Maris; Bisters, Valdis; Burlakovs, Juris

2018-06-01

Gasification is the process converting solid fuels as coal and organic plant matter, or biomass into combustible gas, called syngas. Gasification is a thermal conversion process using carbonaceous fuel, and it differs substantially from other thermal processes such as incineration or pyrolysis. The process can be used with virtually any carbonaceous fuel. It is an endothermic thermal conversion process, with partial oxidation being the dominant feature. Gasification converts various feedstock including waste to a syngas. Instead of producing only heat and electricity, synthesis gas produced by gasification may be transformed into commercial products with higher value as transport fuels, fertilizers, chemicals and even to substitute natural gas. Thermo-chemical conversion of biomass and solid municipal waste is developing as a tool to promote the idea of energy system without fossil fuels to a reality. In municipal solid waste management, gasification does not compete with recycling, moreover it enhances recycling programs. Pre-processing and after-processing must increase the amount of recyclables in the circular economy. Additionally, end of life plastics can serve as an energy feedstock for gasification as otherwise it cannot be sorted out and recycled. There is great potential for application of gasification technology within the biomass waste and solid waste management sector. Industrial self-consumption in the mode of combined heat and power can contribute to sustainable economic development within a circular economy.

A biophysical investigation on the binding of proflavine with human hemoglobin: Insights from spectroscopy, thermodynamics and AFM studies.

PubMed

Basu, Anirban; Kumar, Gopinatha Suresh

2016-12-01

Interaction of proflavine with hemoglobin (Hgb) was studied employing spectroscopy, calorimetry, and atomic force microscopy. The equilibrium constant was found to be of the order 10 4 M -1 . The quenching of Hgb fluorescence by proflavine was due to the complex formation. Calculation of the molecular distance (r) between the donor (β-Trp37 of Hgb) and acceptor (proflavine) suggested that energy can be efficiently transferred from the β-Trp37 residue at the α1β2 interface of the protein to the dye. Proflavine induced significant secondary structural changes in Hgb. Synchronous fluorescence studies showed that proflavine altered the microenvironment around the tryptophan residues to a greater extent than the tyrosine residues. Circular dichroism spectral studies showed that proflavine caused significant reduction in the α-helical content of Hgb. The esterase activity assay further complemented the circular dichroism data. The Soret band intensity of Hgb decreased upon complexation. Differential scanning calorimetry and circular dichroism melting results revealed that proflavine induced destabilization of Hgb. The binding was driven by both positive entropy and negative enthalpy. Atomic force microscopy studies revealed that the essential morphological features of hemoglobin were retained in the presence of proflavine. Overall, insights on the photophysical aspects and energetics of the binding of proflavine with Hgb are presented. Copyright © 2016 Elsevier B.V. All rights reserved.

CIRCULARITY OF THE INTERSTELLAR BOUNDARY EXPLORER RIBBON OF ENHANCED ENERGETIC NEUTRAL ATOM (ENA) FLUX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Funsten, H. O.; Higdon, D. M.; Larsen, B. A.

2013-10-10

As a sharp feature in the sky, the ribbon of enhanced energetic neutral atom (ENA) flux observed by the Interstellar Boundary Explorer (IBEX) mission is a key signature for understanding the interaction of the heliosphere and the interstellar medium through which we are moving. Over five nominal IBEX energy passbands (0.7, 1.1, 1.7, 2.7, and 4.3 keV), the ribbon is extraordinarily circular, with a peak location centered at ecliptic (λ{sub RC}, β{sub RC}) = (219.°2 ± 1.°3, 39.°9 ± 2.°3) and a half cone angle of φ{sub C} = 74.°5 ± 2.°0. A slight elongation of the ribbon, generally perpendicularmore » to the ribbon center-heliospheric nose vector and with eccentricity ∼0.3, is observed over all energies. At 4.3 keV, the ribbon is slightly larger and displaced relative to lower energies. For all ENA energies, a slice of the ribbon flux peak perpendicular to the circular arc is asymmetric and systematically skewed toward the ribbon center. We derive a spatial coherence parameter δ{sub C} ≤ 0.014 that characterizes the spatial uniformity of the ribbon over its extent in the sky and is a key constraint for understanding the underlying processes and structure governing the ribbon ENA emission.« less

Cerebral vascular amyloid seeds drive amyloid β-protein fibril assembly with a distinct anti-parallel structure

PubMed Central

Xu, Feng; Fu, Ziao; Dass, Sharmila; Kotarba, AnnMarie E.; Davis, Judianne; Smith, Steven O.; Van Nostrand, William E.

2016-01-01

Cerebrovascular accumulation of amyloid β-protein (Aβ), a condition known as cerebral amyloid angiopathy (CAA), is a common pathological feature of patients with Alzheimer's disease. Familial Aβ mutations, such as Dutch-E22Q and Iowa-D23N, can cause severe cerebrovascular accumulation of amyloid that serves as a potent driver of vascular cognitive impairment and dementia. The distinctive features of vascular amyloid that underlie its unique pathological properties remain unknown. Here, we use transgenic mouse models producing CAA mutants (Tg-SwDI) or overproducing human wild-type Aβ (Tg2576) to demonstrate that CAA-mutant vascular amyloid influences wild-type Aβ deposition in brain. We also show isolated microvascular amyloid seeds from Tg-SwDI mice drive assembly of human wild-type Aβ into distinct anti-parallel β-sheet fibrils. These findings indicate that cerebrovascular amyloid can serve as an effective scaffold to promote rapid assembly and strong deposition of Aβ into a unique structure that likely contributes to its distinctive pathology. PMID:27869115

Numerical prediction of transitional features of turbulent forced gas flows in circular tubes with strong heating

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ezato, K.; Shehata, A.M.; Kunugi, T.

1999-08-01

In order to treat strongly heated, forced gas flows at low Reynolds numbers in vertical circular tubes, the {kappa}-{epsilon} turbulence model of Abe, Kondoh, and Nagano (1994), developed for forced turbulent flow between parallel plates with the constant property idealization, has been successfully applied. For thermal energy transport, the turbulent Prandtl number model of Kays and Crawford (1993) was adopted. The capability to handle these flows was assessed via calculations at the conditions of experiments by Shehata (1984), ranging from essentially turbulent to laminarizing due to the heating. Predictions forecast the development of turbulent transport quantities, Reynolds stress, and turbulentmore » heat flux, as well as turbulent viscosity and turbulent kinetic energy. Overall agreement between the calculations and the measured velocity and temperature distributions is good, establishing confidence in the values of the forecast turbulence quantities--and the model which produced them. Most importantly, the model yields predictions which compare well with the measured wall heat transfer parameters and the pressure drop.« less

Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)).

PubMed

Frank, Oliver; Pradella, Silke; Rohde, Manfred; Scheuner, Carmen; Klenk, Hans-Peter; Göker, Markus; Petersen, Jörn

2014-06-15

Phaeobacter gallaeciensis CIP 105210(T) (= DSM 26640(T) = BS107(T)) is the type strain of the species Phaeobacter gallaeciensis. The genus Phaeobacter belongs to the marine Roseobacter group (Rhodobacteraceae, Alphaproteobacteria). Phaeobacter species are effective colonizers of marine surfaces, including frequent associations with eukaryotes. Strain BS107(T) was isolated from a rearing of the scallop Pecten maximus. Here we describe the features of this organism, together with the complete genome sequence, comprising eight circular replicons with a total of 4,448 genes. In addition to a high number of extrachromosomal replicons, the genome contains six genomic island and three putative prophage regions, as well as a hybrid between a plasmid and a circular phage. Phylogenomic analyses confirm previous results, which indicated that the originally reported P. gallaeciensis type-strain deposit DSM 17395 belongs to P. inhibens and that CIP 105210(T) (= DSM 26640(T)) is the sole genome-sequenced representative of P. gallaeciensis.

Lunar-edge based on-orbit modulation transfer function (MTF) measurement

NASA Astrophysics Data System (ADS)

Cheng, Ying; Yi, Hongwei; Liu, Xinlong

2017-10-01

Modulation transfer function (MTF) is an important parameter for image quality evaluation of on-orbit optical image systems. Various methods have been proposed to determine the MTF of an imaging system which are based on images containing point, pulse and edge features. In this paper, the edge of the moon can be used as a high contrast target to measure on-orbit MTF of image systems based on knife-edge methods. The proposed method is an extension of the ISO 12233 Slanted-edge Spatial Frequency Response test, except that the shape of the edge is a circular arc instead of a straight line. In order to get more accurate edge locations and then obtain a more authentic edge spread function (ESF), we choose circular fitting method based on least square to fit lunar edge in sub-pixel edge detection process. At last, simulation results show that the MTF value at Nyquist frequency calculated using our lunar edge method is reliable and accurate with error less than 2% comparing with theoretical MTF value.

The Erratic Behavior of Lesions in Burnt Bone.

PubMed

Collini, Federica; Amadasi, Alberto; Mazzucchi, Alessandra; Porta, Davide; Regazzola, Valeria Luisa; Garofalo, Paola; Di Blasio, Annalisa; Cattaneo, Cristina

2015-09-01

This study analyses depressed fractures (by blunt force trauma) and circular full-thickness injuries (drill injuries and gunshot wounds) in charred bones. Fifty bovine ribs (total 104 lesions) were divided into three groups. The first group consisted in 20 depressed hammer-produced fractures; in the second one, 60 round drill-holes were produced (30 circular, 30 semicircular); in the third group, 12 fleshed and 12 skeletonized ribs were hit by 9-mm bullets. Each specimen was carbonized in an electric oven up to 800°C. Morphological and metric analyses were performed before and after: morphological features were preserved, but depressed fractures showed an increase in their dimensions (p-value<0.05); the drilled holes shrunk (p-value<0.01); the charring cycle increased the number of fractures in samples with gunshot wounds differently in fleshed and defleshed ribs. This study showed the complex behavior of charred bone, for what concerns the interpretation of trauma and how caution should be applied. © 2015 American Academy of Forensic Sciences.

Vertical-type chiroptical spectrophotometer (I): instrumentation and application to diffuse reflectance circular dichroism measurement.

PubMed

Harada, Takunori; Hayakawa, Hiroshi; Kuroda, Reiko

2008-07-01

We have designed and built a novel universal chiroptical spectrophotometer (UCS-2: J-800KCMF), which can carry out in situ chirality measurement of solid samples without any pretreatment, in the UV-vis region and with high relative efficiency. The instrument was designed to carry out transmittance and diffuse reflectance (DR) circular dichroism (CD) measurements simultaneously, thus housing two photomultipliers. It has a unique feature that light impinges on samples vertically so that loose powders can be measured by placing them on a flat sample holder in an integrating sphere. As is our first universal chiroptical spectrophotometer, UCS-1, two lock-in amplifiers are installed to remove artifact signals arising from macroscopic anisotropies which are unique to solid samples. High performance was achieved by theoretically analyzing and experimentally proven the effect of the photoelastic modulator position on the CD base line shifts, and by selecting high-quality optical and electric components. Measurement of microcrystallines of both enantiomers of ammonium camphorsulfonate by the DRCD mode gave reasonable results.

Low-head feeding system for thin section castings

DOEpatents

Daniel, Sabah S.; Kleeb, Thomas R.; Lewis, Thomas W.; McDermott, John F.; Ozgu, Mustafa R.; Padfield, Ralph C.; Rego, Donovan N.; Vassilicos, Achilles

1990-01-01

A feed system is provided for conveying molten metal to a thin section caster having mold surfaces moving exclusively in the direction of casting. The feed system has a passage of circular cross section adjacent to one end thereof for receiving molten metal and a rectangular cross section at the delivery end thereof adjacent to the caster. The feed system is designed for supplying molten metal to the caster at low pressure for "closed-pool" type caster operation. The point of highest elevation in the metal flow passage of the feed system is on the upper surface of a transition portion where the cross section changes from circular to rectangular adjacent to the nozzle. The level or height of the high point above the centerline of the nozzle exit is selected so as to be less than the pressure of the metal measured in inches at the nozzle exit. This feature enables the maintenance of positive pressure in the metal within the feed system so that ingress of air into the metal is prevented.

A model for chromosome organization during the cell cycle in live E. coli.

PubMed

Liu, Yuru; Xie, Ping; Wang, Pengye; Li, Ming; Li, Hui; Li, Wei; Dou, Shuoxing

2015-11-24

Bacterial chromosomal DNA is a highly compact nucleoid. The organization of this nucleoid is poorly understood due to limitations in the methods used to monitor the complexities of DNA organization in live bacteria. Here, we report that circular plasmid DNA is auto-packaged into a uniform dual-toroidal-spool conformation in response to mechanical stress stemming from sharp bending and un-winding by atomic force microscopic analysis. The mechanism underlying this phenomenon was deduced with basic physical principles to explain the auto-packaging behaviour of circular DNA. Based on our observations and previous studies, we propose a dynamic model of how chromosomal DNA in E. coli may be organized during a cell division cycle. Next, we test the model by monitoring the development of HNS clusters in live E. coli during a cell cycle. The results were in close agreement with the model. Furthermore, the model accommodates a majority of the thus-far-discovered remarkable features of nucleoids in vivo.

A model for chromosome organization during the cell cycle in live E. coli

PubMed Central

Liu, Yuru; Xie, Ping; Wang, Pengye; Li, Ming; Li, Hui; Li, Wei; Dou, Shuoxing

2015-01-01

Bacterial chromosomal DNA is a highly compact nucleoid. The organization of this nucleoid is poorly understood due to limitations in the methods used to monitor the complexities of DNA organization in live bacteria. Here, we report that circular plasmid DNA is auto-packaged into a uniform dual-toroidal-spool conformation in response to mechanical stress stemming from sharp bending and un-winding by atomic force microscopic analysis. The mechanism underlying this phenomenon was deduced with basic physical principles to explain the auto-packaging behaviour of circular DNA. Based on our observations and previous studies, we propose a dynamic model of how chromosomal DNA in E. coli may be organized during a cell division cycle. Next, we test the model by monitoring the development of HNS clusters in live E. coli during a cell cycle. The results were in close agreement with the model. Furthermore, the model accommodates a majority of the thus-far-discovered remarkable features of nucleoids in vivo. PMID:26597953

Permanent magnets as biasing mechanism for improving the performance of circular dielectric elastomer out-of-plane actuators

NASA Astrophysics Data System (ADS)

Loew, P.; Rizzello, G.; Seelecke, S.

2017-04-01

Dielectric Elastomers (DE) represent an attractive technology for the realization of mechatronic actuators, due to their lightweight, high energy density, high energy efficiency, scalability, and low noise features. In order to produce a stroke, a DE membrane needs to be pre-loaded with a mechanical biasing mechanism. In our previous works, we compared the stroke achieved with different biasing mechanisms for a circular out-of-plane DE Actuator (DEA), i.e., hanging masses, linear and bi-stable springs. The novel contribution of this paper is the investigation of a biasing design approach based on permanent magnets. The resulting magnet-based actuators are usually more compact than the spring-based ones, allowing to obtain more compact systems. Two design solutions are proposed and compared, namely a first one characterized by a stable actuation, and a second one which permits to achieve a higher stroke, but it is intrinsically unstable. The effectiveness of the novel design solution is assessed by means of several experiments.

Plasmonic and SERS performances of compound nanohole arrays fabricated by shadow sphere lithography

NASA Astrophysics Data System (ADS)

Skehan, Connor; Ai, Bin; Larson, Steven R.; Stone, Keenan M.; Dennis, William M.; Zhao, Yiping

2018-03-01

Several plasmonic compound nanohole arrays (CNAs), such as triangular nanoholes and fan-like nanoholes with multiple nanotips and nanogaps, are designed by a simple and efficient shadow sphere lithography technique by tuning the sphere mask size, the deposition and azimuthal angles, substrate temperature T S , and the number of deposition steps N. Compared with conventional circular nanohole arrays, the CNAs show more hot spots and exhibit new transmission speaks. Systematic finite-difference time-domain calculations indicate that different resonance modes excited by the various shaped and sized nanoholes are responsible for the enhanced plasmonic performances of CNAs. Compared to the CNA samples with only one circular hole in the unit cell, the Raman scattering intensity of the CNA with multiple triangular nanoholes, nanogaps, and nanotips can be enhanced up to 5-fold. These CNAs, due to the strong resonance due to the multiple structural features, are promising applications as optical filters, plasmonic sensors, and surface-enhanced spectroscopies.

Optically Stimulated Luminescent Dosimetry for High Dose Rate Brachytherapy

PubMed Central

Tien, Christopher Jason; Ebeling, Robert; Hiatt, Jessica R.; Curran, Bruce; Sternick, Edward

2012-01-01

Purpose: The objective was to determine whether optically stimulated luminescent dosimeters (OSLDs) were appropriate for in vivo measurements in high dose rate brachytherapy. In order to make this distinction, three dosimetric characteristics were tested: dose linearity, dose rate dependence, and angular dependence. The Landauer nanoDot™ OSLDs were chosen due to their popularity and their availability commercially. Methods: To test the dose linearity, each OSLD was placed at a constant location and the dwell time was varied. Next, in order to test the dose rate dependence, each OSLD was placed at different OLSD-to-source distances and the dwell time was held constant. A curved geometry was created using a circular Accuboost® applicator in order to test angular dependence. Results: The OSLD response remained linear for high doses and was independent of dose rate. For doses up to 600 cGy, the linear coefficient of determination was 0.9988 with a response of 725 counts per cGy. The angular dependence was significant only in “edge-on” scenarios. Conclusion: OSLDs are conveniently read out using commercially available readers. OSLDs can be re-read and serve as a permanent record for clinical records or be annealed using conventional fluorescent light. Lastly, OSLDs are produced commercially for $5 each. Due to these convenient features, in conjunction with the dosimetric performance, OSLDs should be considered a clinically feasible and attractive tool for in vivo HDR brachytherapy measurements. PMID:22888476