Sample records for dominant condition characterized
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Rusinova, E V
2011-01-01
The motivational condition of hunger and formation of the hunger dominant after daily food deprivation was studied in the conditions of chronic experiments on rabbits. It was shown, that the hunger condition was accompanied by left sided interhemispher asymmetry on indicators of spectral capacity of EEG frontal and right-hand asymmetry sensorimotor areas of the cortex. A hunger dominant was accompanied by falling of spectral capacity of EEG of areas of both hemispheres. The condition of hunger and a hunger dominant were characterized by right-hand asymmetry on average level of EEG coherence of frontal and sensorimotor areas. At transition of a condition of hunger in a hunger dominant there was an average level of EEG coherence decrease in areas of the right hemisphere. Electric processes of the cortex of the brain at a motivational condition of hunger and a hunger dominant were different.
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Gao, Xin; Niu, Cuijuan; Chen, Yushun; Yin, Xuwang
2014-04-01
Understanding the effects of watershed land uses (e.g., agriculture, urban industry) on stream ecological conditions is important for the management of large river basins. A total of 41 and 56 stream sites (from first to fourth order) that were under a gradient of watershed land uses were monitored in 2009 and 2010, respectively, in the Liao River Basin, Northeast China. The monitoring results showed that a total of 192 taxa belonging to four phyla, seven classes, 21 orders and 91 families were identified. The composition of macroinvertebrate community in the Liao River Basin was dominated by aquatic insect taxa (Ephemeroptera and Diptera), Oligochaeta and Molluscs. The functional feeding group GC (Gatherer/Collector) was dominant in the whole basin. Statistical results showed that sites with less watershed impacts (lower order sites) were characterized by higher current velocity and habitat score, more sensitive taxa (e.g., Ephemeroptera), and the substrate was dominated by high percentage of cobble and pebble. The sites with more impacts from agriculture and urban industry (higher order sites) were characterized by higher biochemical (BOD5) and chemical oxygen demand (COD), more tolerant taxa (e.g., Chironominae), and the substrate was dominated by silt and sand. Agriculture and urban-industry activities have reduced habitat condition, increased organic pollutants, reduced macroinvertebrate abundance, diversity, and sensitive taxa in streams of the lower Liao River Basin. Restoration of degraded habitat condition and control of watershed organic pollutants could be potential management priorities for the Basin.
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Conditioned social dominance threat: observation of others' social dominance biases threat learning.
Haaker, Jan; Molapour, Tanaz; Olsson, Andreas
2016-10-01
Social groups are organized along dominance hierarchies, which determine how we respond to threats posed by dominant and subordinate others. The persuasive impact of these dominance threats on mental and physical well-being has been well described but it is unknown how dominance rank of others bias our experience and learning in the first place. We introduce a model of conditioned social dominance threat in humans, where the presence of a dominant other is paired with an aversive event. Participants first learned about the dominance rank of others by observing their dyadic confrontations. During subsequent fear learning, the dominant and subordinate others were equally predictive of an aversive consequence (mild electric shock) to the participant. In three separate experiments, we show that participants' eye-blink startle responses and amygdala reactivity adaptively tracked dominance of others during observation of confrontation. Importantly, during fear learning dominant vs subordinate others elicited stronger and more persistent learned threat responses as measured by physiological arousal and amygdala activity. Our results characterize the neural basis of learning through observing conflicts between others, and how this affects subsequent learning through direct, personal experiences. © The Author (2016). Published by Oxford University Press. For Permissions, please email: journals.permissions@oup.com.
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Conditioned social dominance threat: observation of others’ social dominance biases threat learning
Molapour, Tanaz; Olsson, Andreas
2016-01-01
Social groups are organized along dominance hierarchies, which determine how we respond to threats posed by dominant and subordinate others. The persuasive impact of these dominance threats on mental and physical well-being has been well described but it is unknown how dominance rank of others bias our experience and learning in the first place. We introduce a model of conditioned social dominance threat in humans, where the presence of a dominant other is paired with an aversive event. Participants first learned about the dominance rank of others by observing their dyadic confrontations. During subsequent fear learning, the dominant and subordinate others were equally predictive of an aversive consequence (mild electric shock) to the participant. In three separate experiments, we show that participants’ eye-blink startle responses and amygdala reactivity adaptively tracked dominance of others during observation of confrontation. Importantly, during fear learning dominant vs subordinate others elicited stronger and more persistent learned threat responses as measured by physiological arousal and amygdala activity. Our results characterize the neural basis of learning through observing conflicts between others, and how this affects subsequent learning through direct, personal experiences. PMID:27217107
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An Inquiry into Rural Dwellers' Opinions about Living Conditions in Urban and Rural Places.
ERIC Educational Resources Information Center
Azarkh, Emilia Davidovna; Korel, Liudmila Vasilyevna
Utilizing data derived from a questionnaire survey of the rural population of Novosibirsk province in the USSR, the following hypothesis was tested: the attitude of rural inhabitants toward urban and rural conditions is characterized by a considerable preponderance of positive evaluations of dominant rural conditions and transient urban conditions…
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Identification of Deformation Mechanisms During Bi-Axial Straining of Superplastic AA5083 Material
2004-06-01
equiaxed grain structure in FSS along with the prevalence of high - energy boundaries accommodates sliding under the proper shearing conditions. Figure...by a randomized texture and a higher concentration of high disorientation angles. Dislocation creep, which dominates at higher strain rates, is...concentration of high disorientation angles. Dislocation creep, which dominates at higher strain rates, is characterized by fiber texture formation
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Chong, Jessica X; McMillin, Margaret J; Shively, Kathryn M; Beck, Anita E; Marvin, Colby T; Armenteros, Jose R; Buckingham, Kati J; Nkinsi, Naomi T; Boyle, Evan A; Berry, Margaret N; Bocian, Maureen; Foulds, Nicola; Uzielli, Maria Luisa Giovannucci; Haldeman-Englert, Chad; Hennekam, Raoul C M; Kaplan, Paige; Kline, Antonie D; Mercer, Catherine L; Nowaczyk, Malgorzata J M; Klein Wassink-Ruiter, Jolien S; McPherson, Elizabeth W; Moreno, Regina A; Scheuerle, Angela E; Shashi, Vandana; Stevens, Cathy A; Carey, John C; Monteil, Arnaud; Lory, Philippe; Tabor, Holly K; Smith, Joshua D; Shendure, Jay; Nickerson, Deborah A; Bamshad, Michael J
2015-03-05
Freeman-Sheldon syndrome, or distal arthrogryposis type 2A (DA2A), is an autosomal-dominant condition caused by mutations in MYH3 and characterized by multiple congenital contractures of the face and limbs and normal cognitive development. We identified a subset of five individuals who had been putatively diagnosed with "DA2A with severe neurological abnormalities" and for whom congenital contractures of the limbs and face, hypotonia, and global developmental delay had resulted in early death in three cases; this is a unique condition that we now refer to as CLIFAHDD syndrome. Exome sequencing identified missense mutations in the sodium leak channel, non-selective (NALCN) in four families affected by CLIFAHDD syndrome. We used molecular-inversion probes to screen for NALCN in a cohort of 202 distal arthrogryposis (DA)-affected individuals as well as concurrent exome sequencing of six other DA-affected individuals, thus revealing NALCN mutations in ten additional families with "atypical" forms of DA. All 14 mutations were missense variants predicted to alter amino acid residues in or near the S5 and S6 pore-forming segments of NALCN, highlighting the functional importance of these segments. In vitro functional studies demonstrated that NALCN alterations nearly abolished the expression of wild-type NALCN, suggesting that alterations that cause CLIFAHDD syndrome have a dominant-negative effect. In contrast, homozygosity for mutations in other regions of NALCN has been reported in three families affected by an autosomal-recessive condition characterized mainly by hypotonia and severe intellectual disability. Accordingly, mutations in NALCN can cause either a recessive or dominant condition characterized by varied though overlapping phenotypic features, perhaps based on the type of mutation and affected protein domain(s). Copyright © 2015 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.
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Vermeulen, C J; Bijlsma, R
2004-01-01
The specific genetic basis of inbreeding depression is poorly understood. To address this question, two conditionally expressed lethal effects that were found to cause line-specific life span reductions in two separate inbred lines of Drosophila melanogaster were characterized phenotypically and genetically in terms of whether the accelerated mortality effects are dominant or recessive. The mortality effect in one line (I4) is potentially a temperature-sensitive semilethal that expresses in adult males only and is partially dominant. The other line (I10) responds as one would expect for a recessive lethal. It requires a cold shock for expression and is cold sensitive. Flies exhibiting this lethal condition responded as pupae and freshly eclosed imagoes. The effect is recessive in both males and females. The expression of the lethal effects in both lines is highly dependent upon environmental conditions. These results will serve as a basis for more detailed and mechanistic genetic research on inbreeding depression and are relevant to sex- and environment-specific effects on life span observed in quantitative trait loci studies using inbred lines. PMID:15280238
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Inorganic species distribution and microbial diversity within high Arctic cryptoendolithic habitats.
Omelon, Christopher R; Pollard, Wayne H; Ferris, F Grant
2007-11-01
Cryptoendolithic habitats in the Canadian high Arctic are associated with a variety of microbial community assemblages, including cyanobacteria, algae, and fungi. These habitats were analyzed for the presence of metal ions by sequential extraction and evaluated for relationships between these and the various microorganisms found at each site using multivariate statistical methods. Cyanobacteria-dominated communities exist under higher pH conditions with elevated concentrations of calcium and magnesium, whereas communities dominated by fungi and algae are characterized by lower pH conditions and higher concentrations of iron, aluminum, and silicon in the overlying surfaces. These results suggest that the activity of the dominant microorganisms controls the pH of the surrounding environment, which in turn dictates rates of weathering or the possibility for surface crust formation, both ultimately deciding the structure of microbial diversity for each cryptoendolithic habitat.
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NASA Astrophysics Data System (ADS)
Layes, Vincent; Monje, Sascha; Corbella, Carles; Schulz-von der Gathen, Volker; von Keudell, Achim; de los Arcos, Teresa
2017-05-01
In-vacuum characterization of magnetron targets after High Power Impulse Magnetron Sputtering (HiPIMS) has been performed by X-ray photoelectron spectroscopy (XPS). Al-Cr composite targets (circular, 50 mm diameter) mounted in two different geometries were investigated: an Al target with a small Cr disk embedded at the racetrack position and a Cr target with a small Al disk embedded at the racetrack position. The HiPIMS discharge and the target surface composition were characterized in parallel for low, intermediate, and high power conditions, thus covering both the Ar-dominated and the metal-dominated HiPIMS regimes. The HiPIMS plasma was investigated using optical emission spectroscopy and fast imaging using a CCD camera; the spatially resolved XPS surface characterization was performed after in-vacuum transfer of the magnetron target to the XPS chamber. This parallel evaluation showed that (i) target redeposition of sputtered species was markedly more effective for Cr atoms than for Al atoms; (ii) oxidation at the target racetrack was observed even though the discharge ran in pure Ar gas without O2 admixture, the oxidation depended on the discharge power and target composition; and (iii) a bright emission spot fixed on top of the inserted Cr disk appeared for high power conditions.
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The National Institute of Education and Incremental Budgeting.
ERIC Educational Resources Information Center
Hastings, Anne H.
1979-01-01
The National Institute of Education's (NIE) history demonstrates that the relevant criteria for characterizing budgeting as incremental are not the predictability and stability of appropriations but the conditions of complexity, limited information, multiple factors, and imperfect agreement on ends; NIE's appropriations were dominated by political…
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Intercomparison of model response and internal variability across climate model ensembles
NASA Astrophysics Data System (ADS)
Kumar, Devashish; Ganguly, Auroop R.
2017-10-01
Characterization of climate uncertainty at regional scales over near-term planning horizons (0-30 years) is crucial for climate adaptation. Climate internal variability (CIV) dominates climate uncertainty over decadal prediction horizons at stakeholders' scales (regional to local). In the literature, CIV has been characterized indirectly using projections of climate change from multi-model ensembles (MME) instead of directly using projections from multiple initial condition ensembles (MICE), primarily because adequate number of initial condition (IC) runs were not available for any climate model. Nevertheless, the recent availability of significant number of IC runs from one climate model allows for the first time to characterize CIV directly from climate model projections and perform a sensitivity analysis to study the dominance of CIV compared to model response variability (MRV). Here, we measure relative agreement (a dimensionless number with values ranging between 0 and 1, inclusive; a high value indicates less variability and vice versa) among MME and MICE and find that CIV is lower than MRV for all projection time horizons and spatial resolutions for precipitation and temperature. However, CIV exhibits greater dominance over MRV for seasonal and annual mean precipitation at higher latitudes where signals of climate change are expected to emerge sooner. Furthermore, precipitation exhibits large uncertainties and a rapid decline in relative agreement from global to continental, regional, or local scales for MICE compared to MME. The fractional contribution of uncertainty due to CIV is invariant for precipitation and decreases for temperature as lead time progresses towards the end of the century.
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Dixit, Ramakant; Dixit, Kalpana; Paramez, A. R.
2010-01-01
Cleidocranial dysplasia is a rare autosomal dominant condition with generalized dysplasia of bone, characterized by delayed closer of cranial sutures, hypoplastic or aplastic clavicles, short stature, dental abnormalities and a variety of other skeletal abnormalities. We present a seven-year-old female child presenting with classical features of cleidocranial dysplasia. PMID:20931042
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Farivar, Reza; Thompson, Benjamin; Mansouri, Behzad; Hess, Robert F
2011-12-20
Factors such as strabismus or anisometropia during infancy can disrupt normal visual development and result in amblyopia, characterized by reduced visual function in an otherwise healthy eye and often associated with persistent suppression of inputs from the amblyopic eye by those from the dominant eye. It has become evident from fMRI studies that the cortical response to stimulation of the amblyopic eye is also affected. We were interested to compare the hemodynamic response function (HRF) of early visual cortex to amblyopic vs. dominant eye stimulation. In the first experiment, we found that stimulation of the amblyopic eye resulted in a signal that was both attenuated and delayed in its time to peak. We postulated that this delay may be due to suppressive effects of the dominant eye and, in our second experiment, measured the cortical response of amblyopic eye stimulation under two conditions--where the dominant eye was open and seeing a static pattern (high suppression) or where the dominant eye was patched and closed (low suppression). We found that the HRF in response to amblyopic eye stimulation depended on whether the dominant eye was open. This effect was manifested as both a delayed HRF under the suppressed condition and an amplitude reduction.
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Carbon and nitrogen cycling in southwestern ponderosa fine forests
Stephen C. Hart; Paul C. Selmants; Sarah I. Boyle; Steven T. Overby
2007-01-01
Ponderosa pine forests of the southwestern United States were historically characterized by relatively open, parklike stands with a bunchgrass-dominated understory. This forest structure was maintained by frequent, low-intensity surface fires. Heavy livestock grazing, fire suppression, and favorable weather conditions following Euro-American settlement in the late 19th...
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Growth-climate relationships across topographic gradients in the northern Great Lakes
S.F. Dymond; A.W. D' Amato; Randy Kolka; P.V. Bolstad; Stephen Sebestyen; J.B. Bradford
2016-01-01
Climatic conditions exert important control over the growth, productivity, and distribution of forests, and characterizing these relationships is essential for understanding how forest ecosystems will respond to climate change. We used dendrochronological methods to develop climateâgrowth relationships for two dominant species, Populus tremuloides...
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A process-sedimentary framework for characterizing recent and ancient sabkhas
Handford, C.R.
1981-01-01
The discovery of sabkha environments during the 1960's, marked the beginning of Recent evaporite sedimentological studies and their perception as models for facies analysis. However, variation among Recent sabkhas, though recognized by the geologic community, has not been duly addressed, which has resulted in overuse of the Trucial Coast model in comparative sedimentological studies. Knowledge of the dominant physical processes which determine sabkha morphology, and of the sedimentary response to those processes, can lead to a fundamental understanding of a sabkha's origin and of how it differs from other sabkhas. Physical processes thought to be most important (besides evaporation) include those operative under: (1) marine-; (2) fluvial-lacustrine-; and (3) eolian-dominated conditions. Dominance of one or more of these in the proper settings give rise to marine coastal sabkhas, continental playas, and interdune sabkhas. Sedimentary responses to dominant physical processes lead to the development of sabkhas consisting of a combination of either: (1) terrigenous clastics; (2) carbonate-sulfate (anhydrite-gypsum) minerals; or (3) soluble salts (halite, sylvite, polyhalite, etc.). Sediment characterization can also allow discrimination of the range or compositional variety in, for example, coastal sabkhas. Where applied to the stratigraphic record, this classification system may help unravel the sedimentary history of an ancient sabkha system, and a determination of the dominant physical processes that ruled its development. ?? 1981.
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Lagrangian statistics and flow topology in forced two-dimensional turbulence.
Kadoch, B; Del-Castillo-Negrete, D; Bos, W J T; Schneider, K
2011-03-01
A study of the relationship between Lagrangian statistics and flow topology in fluid turbulence is presented. The topology is characterized using the Weiss criterion, which provides a conceptually simple tool to partition the flow into topologically different regions: elliptic (vortex dominated), hyperbolic (deformation dominated), and intermediate (turbulent background). The flow corresponds to forced two-dimensional Navier-Stokes turbulence in doubly periodic and circular bounded domains, the latter with no-slip boundary conditions. In the double periodic domain, the probability density function (pdf) of the Weiss field exhibits a negative skewness consistent with the fact that in periodic domains the flow is dominated by coherent vortex structures. On the other hand, in the circular domain, the elliptic and hyperbolic regions seem to be statistically similar. We follow a Lagrangian approach and obtain the statistics by tracking large ensembles of passively advected tracers. The pdfs of residence time in the topologically different regions are computed introducing the Lagrangian Weiss field, i.e., the Weiss field computed along the particles' trajectories. In elliptic and hyperbolic regions, the pdfs of the residence time have self-similar algebraic decaying tails. In contrast, in the intermediate regions the pdf has exponential decaying tails. The conditional pdfs (with respect to the flow topology) of the Lagrangian velocity exhibit Gaussian-like behavior in the periodic and in the bounded domains. In contrast to the freely decaying turbulence case, the conditional pdfs of the Lagrangian acceleration in forced turbulence show a comparable level of intermittency in both the periodic and the bounded domains. The conditional pdfs of the Lagrangian curvature are characterized, in all cases, by self-similar power-law behavior with a decay exponent of order -2.
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NASA Technical Reports Server (NTRS)
Banks, Daniel W.
2008-01-01
Infrared thermography is a powerful tool for investigating fluid mechanics on flight vehicles. (Can be used to visualize and characterize transition, shock impingement, separation etc.). Updated onboard F-15 based system was used to visualize supersonic boundary layer transition test article. (Tollmien-Schlichting and cross-flow dominant flow fields). Digital Recording improves image quality and analysis capability. (Allows accurate quantitative (temperature) measurements, Greater enhancement through image processing allows analysis of smaller scale phenomena).
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Bekaert, Karen; Devriese, Lisa; Maes, Sara; Robbens, Johan
2015-04-01
The aim of this study was to investigate the microbial quality of whole Norway lobster (Nephrops norvegicus) and Norway lobster tails to optimize handling conditions. This was done by assessing the total viable count (TVC) and characterizing the dominant microbiota. The cultivable microorganisms were quantified via classical microbiological plating methods. To characterize as many bacterial species present as possible, we performed advanced molecular identification techniques (PCR-DGGE). The initial TVC of fresh Norway lobster meat was high (3.0 log cfu/g) as compared to fish. No significant difference between whole Norway lobster and Norway lobster tails could be found during the storage period. From day 6 of storage, a significant difference between Plate Count Agar (PCA) and Marine Agar (MA) was observed. The microbiota of Norway lobster was dominated by members of the Gram-negative genera such as Psychrobacter spp., Pseudoalteromonas spp., Pseudomonas spp., Luteimonas spp., and Aliivibrio spp. From these bacteria, mainly Psychrobacter spp. and Pseudomonas spp. remained present until the end of the storage period. These are known spoilage organisms in fishery products. Other known spoilage organisms of crustaceans such as Photobacterium spp. could not be identified. Copyright © 2014 Elsevier Ltd. All rights reserved.
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John M. Mulhouse; Diane De Steven; Robert F. Lide; Rebecca R. Sharitz
2005-01-01
Wetland vegetation is strongly dependent upon climate-influenced hydrologic conditions, and plant composition responds in generally consistent ways to droughts. However, the extent of species composition change during drought may be influenced by the pre-existing structure of wetland vegetation. We characterized the vegetation of ten herbaceous Carolina bay wetlands on...
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Eamon Engber; Jason Teraoka; Phil van Mantgem
2017-01-01
Almost half of Redwood National Park is comprised of second-growth forests characterized by high stand density, deficient redwood composition, and low understory biodiversity. Typical structure of young redwood stands impedes the recovery of old-growth conditions, such as dominance of redwood (Sequoia sempervirens (D. Don) Endl.), distinct...
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Type I hereditary punctate keratoderma.
Asadi, Arash K
2003-10-01
A 75-year-old man with a history of prostatic carcinoma and atypical fibroxanthoma reports a long-standing history of 1-2 mm depressed, hyperkeratotic papules on the palms. His mother suffered a similar condition. Histologically, the papules demonstrated hyperkeratosis, without columns of parakeratosis. A diagnosis of type I hereditary punctate keratoderma (Buschke-Fisher-Brauer disease) was made. This condition, which is classified as one of the three hereditary forms of punctate palmoplantar keratoderma, is an autosomal-dominant condition with variable penetrance. It is characterized clinically by multiple, tiny, punctate keratoses of the palms and soles. Affected individuals appear to be at increased risk of developing malignant conditions.
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Sarah K. Poznanovic; Erik A. Lilleskov; Christopher R. Webster
2015-01-01
Coarse woody debris (CWD) is an important nursery environment for many tree species. Understanding the communities of ectomycorrhizal fungi (ECMF) and the effect of ECMF species on tree seedling condition in CWD will elucidate the potential for ECMF-mediated effects on seedling dynamics. In hemlock-dominated stands, we characterized ECMF communities associated with...
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The Effects of Explicit Instruction on the Writing Ability of a Student with Noonan Syndrome
ERIC Educational Resources Information Center
Asaro-Saddler, Kristie; Saddler, Bruce; Ellis-Robinson, Tammy
2014-01-01
In this study, we sought to determine the effectiveness of a sentence creation intervention on the sentence writing ability of a young writer with Noonan Syndrome. Noonan syndrome is an autosomal dominant condition characterized by shortness in stature, with neck and ear anomalies, hypertelorism, ptosis of the eyelids, low set ears, and instances…
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Characterization of high-pressure capacitively coupled hydrogen plasmas
DOE Office of Scientific and Technical Information (OSTI.GOV)
Nunomura, S.; Kondo, M.
2007-11-01
Capacitively coupled very-high-frequency hydrogen plasmas have been systematically diagnosed in a wide range of a gas pressure from 5 mTorr to 10 Torr. The plasma parameters, ion species, and ion energy distributions (IEDs) are measured using a Langmuir probe, optical emission spectroscopy, and energy filtered mass spectrometer. The measurement results show that the ion species in a hydrogen plasma is determined from ionization channels and subsequent ion-molecule reactions. The ions are dominated by H{sub 2}{sup +} at a less-collisional condition of < or approx. 20 mTorr, whereas those are dominated by H{sub 3}{sup +} at a collisional condition of >more » or approx. 20 mTorr. The IED is determined by both the sheath potential drop and ion-neutral collisions in the plasma sheath. The IED is broadened for a collisional sheath at > or approx. 0.3 Torr and the ion bombardment energy is lowered. For high-pressure discharge operated at {approx_equal}10 Torr, plasmas are characterized by a low electron temperature of {approx_equal}0.8 eV and a low ion bombardment energy of < or approx. 15 eV.« less
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Conditions favouring Bromus tectorum dominance of endangered sagebrush steppe ecosystems
Reisner, Michael D.; Grace, James B.; Pyke, David A.; Doescher, Paul S.
2013-01-01
4. Synthesis and applications. Grazing exacerbates Bromus tectorum dominance in one of North America's most endangered ecosystems by adversely impacting key mechanisms mediating resistance to invasion. If the goal is to conserve and restore resistance of these systems, managers should consider maintaining or restoring: (i) high bunchgrass cover and structure characterized by spatially dispersed bunchgrasses and small gaps between them; (ii) a diverse assemblage of bunchgrass species to maximize competitive interactions with B. tectorum in time and space; and (iii) biological soil crusts to limit B. tectorum establishment. Passive restoration by reducing cumulative cattle grazing may be one of the most effective means of achieving these three goals.
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CO2 flux studies of different hemiboreal forest ecosystems
NASA Astrophysics Data System (ADS)
Krasnova, Alisa; Krasnov, Dmitrii; Noe, Steffen M.; Uri, Veiko; Mander, Ülo; Niinemets, Ülo; Soosaar, Kaido
2017-04-01
Hemiboreal zone is a transition between boreal and temperate zones characterized by the combination of climatic and edaphic conditions inherent in both zones. Hemiboreal forests are typically presented by mixed forests types with different ratios of deciduous and conifer tree species. Dominating tree species composition affects the functioning of forest ecosystem and its influence on biogeochemical cycles. We present the result of ecosystem scale CO2 eddy-covariance fluxes research conducted in 4 ecosystems (3 forests sites and 1 clear-cut area) of hemiboreal zone in Estonia. All 4 sites were developing under similar climatic conditions, but different forest management practices resulted in different composition of dominating tree species: pine forest with spruce trees as a second layer (Soontaga site); spruce/birch forest with single alder trees (Liispõllu site); forest presented by sectors of pine, spruce, birch and clearcut areas (SMEAR Estonia site); 5-years old clearcut area (Kõnnu site).
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Stochastic Dominance and Analysis of ODI Batting Performance: the Indian Cricket Team, 1989-2005
Damodaran, Uday
2006-01-01
Relative to other team games, the contribution of individual team members to the overall team performance is more easily quantifiable in cricket. Viewing players as securities and the team as a portfolio, cricket thus lends itself better to the use of analytical methods usually employed in the analysis of securities and portfolios. This paper demonstrates the use of stochastic dominance rules, normally used in investment management, to analyze the One Day International (ODI) batting performance of Indian cricketers. The data used span the years 1989 to 2005. In dealing with cricketing data the existence of ‘not out’ scores poses a problem while processing the data. In this paper, using a Bayesian approach, the ‘not-out’ scores are first replaced with a conditional average. The conditional average that is used represents an estimate of the score that the player would have gone on to score, if the ‘not out’ innings had been completed. The data thus treated are then used in the stochastic dominance analysis. To use stochastic dominance rules we need to characterize the ‘utility’ of a batsman. The first derivative of the utility function, with respect to runs scored, of an ODI batsman can safely be assumed to be positive (more runs scored are preferred to less). However, the second derivative needs not be negative (no diminishing marginal utility for runs scored). This means that we cannot clearly specify whether the value attached to an additional run scored is lesser at higher levels of scores. Because of this, only first-order stochastic dominance is used to analyze the performance of the players under consideration. While this has its limitation (specifically, we cannot arrive at a complete utility value for each batsman), the approach does well in describing player performance. Moreover, the results have intuitive appeal. Key Points The problem of dealing with ‘not out’ scores in cricket is tackled using a Bayesian approach. Stochastic dominance rules are used to characterize the utility of a batsman. Since the marginal utility of runs scored is not diminishing in nature, only first order stochastic dominance rules are used. The results, demonstrated using data for the Indian cricket team are intuitively appealing. The limitation of the approach is that it cannot arrive at a complete utility value for the batsman. PMID:24357944
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Stochastic Dominance and Analysis of ODI Batting Performance: the Indian Cricket Team, 1989-2005.
Damodaran, Uday
2006-01-01
Relative to other team games, the contribution of individual team members to the overall team performance is more easily quantifiable in cricket. Viewing players as securities and the team as a portfolio, cricket thus lends itself better to the use of analytical methods usually employed in the analysis of securities and portfolios. This paper demonstrates the use of stochastic dominance rules, normally used in investment management, to analyze the One Day International (ODI) batting performance of Indian cricketers. The data used span the years 1989 to 2005. In dealing with cricketing data the existence of 'not out' scores poses a problem while processing the data. In this paper, using a Bayesian approach, the 'not-out' scores are first replaced with a conditional average. The conditional average that is used represents an estimate of the score that the player would have gone on to score, if the 'not out' innings had been completed. The data thus treated are then used in the stochastic dominance analysis. To use stochastic dominance rules we need to characterize the 'utility' of a batsman. The first derivative of the utility function, with respect to runs scored, of an ODI batsman can safely be assumed to be positive (more runs scored are preferred to less). However, the second derivative needs not be negative (no diminishing marginal utility for runs scored). This means that we cannot clearly specify whether the value attached to an additional run scored is lesser at higher levels of scores. Because of this, only first-order stochastic dominance is used to analyze the performance of the players under consideration. While this has its limitation (specifically, we cannot arrive at a complete utility value for each batsman), the approach does well in describing player performance. Moreover, the results have intuitive appeal. Key PointsThe problem of dealing with 'not out' scores in cricket is tackled using a Bayesian approach.Stochastic dominance rules are used to characterize the utility of a batsman.Since the marginal utility of runs scored is not diminishing in nature, only first order stochastic dominance rules are used.The results, demonstrated using data for the Indian cricket team are intuitively appealing.The limitation of the approach is that it cannot arrive at a complete utility value for the batsman.
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Autosomal-dominant familial angiolipomatosis.
Garib, George; Siegal, Gene P; Andea, Aleodor A
2015-01-01
Angiolipomas are among the most common benign soft-tissue tumors and usually present as solitary nodules; however, angiolipomas also may present as multiple subcutaneous nodules, typically on the arms and trunk of young men. Although multiple angiolipomas most often occur sporadically, a family history can be identified in a minority of cases. Familial angiolipomatosis is a rare condition with an autosomal-recessive transmission pattern that is characterized by multiple subcutaneous tumors and a family history of similar lesions, which are not associated with malignant neoplasms. We report a case of familial angiolipomatosis with an unusual autosomal-dominant transmission pattern. Our patient presented with multiple angiolipomas that were highly suggestive of familial angiolipomatosis transmitted in an autosomal-dominant fashion, as he had several family members with a history of similar fatty tumors. Autosomal-dominant familial angiolipomatosis may be misdiagnosed as neurofibromatosis type I. Therefore, in cases of multiple subcutaneous tumors and a family history of similar lesions, histologic examination is important to establish the correct diagnosis.
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NASA Astrophysics Data System (ADS)
Possamai, Bianca; Vieira, João P.; Grimm, Alice M.; Garcia, Alexandre M.
2018-03-01
Global climatic phenomena like El Niño events are known to alter hydrological cycles and local abiotic conditions leading to changes in structure and dynamics of terrestrial and aquatic biological communities worldwide. Based on a long-term (19 years) standardized sampling of shallow water estuarine fishes, this study investigated the temporal variability in composition and dominance patterns of trophic guilds in a subtropical estuary (Patos Lagoon estuary, Southern Brazil) and their relationship with local and regional driving forces associated with moderate (2002-2003 and 2009-2010) and very strong (1997-1998 and 2015-2016) El Niño events. Fish species were classified into eight trophic guilds (DTV detritivore, HVP herbivore-phytoplankton, HVM macroalgae herbivore, ISV insectivore, OMN omnivore, PSV piscivore, ZBV zoobenthivore and ZPL zooplanktivore) and their abundances were correlated with environmental factors. Canonical correspondence analysis revealed that less dominant (those comprising < 10% of total abundance) trophic guilds, such as HVP, HVM, ISV, PSV, increased their relative abundance in the estuary during higher rainfall and lower salinity conditions associated with moderate and very strong El Niño events. An opposite pattern was observed for the dominant trophic fish guilds like OMN and, at lesser extent, DTV and ZPL, which had greater association with higher values of salinity and water transparency occurring mostly during non-El Niño conditions. In contrast, ZBV's abundance was not correlated with contrasting environmental conditions, but rather, had higher association with samples characterized by intermediate environmental values. Overall, these findings show that moderate and very strong El Niño events did not substantially disrupt the dominance patterns among trophic fish guilds in the estuary. Rather, they increased trophic estuarine diversity by flushing freshwater fishes with distinct feeding habits into the estuary.
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Between tide and wave marks: a unifying model of physical zonation on littoral shores
Bird, Christopher E.; Franklin, Erik C.; Smith, Celia M.
2013-01-01
The effects of tides on littoral marine habitats are so ubiquitous that shorelines are commonly described as ‘intertidal’, whereas waves are considered a secondary factor that simply modifies the intertidal habitat. However mean significant wave height exceeds tidal range at many locations worldwide. Here we construct a simple sinusoidal model of coastal water level based on both tidal range and wave height. From the patterns of emergence and submergence predicted by the model, we derive four vertical shoreline benchmarks which bracket up to three novel, spatially distinct, and physically defined zones. The (1) emergent tidal zone is characterized by tidally driven emergence in air; the (2) wave zone is characterized by constant (not periodic) wave wash; and the (3) submergent tidal zone is characterized by tidally driven submergence. The decoupling of tidally driven emergence and submergence made possible by wave action is a critical prediction of the model. On wave-dominated shores (wave height ≫ tidal range), all three zones are predicted to exist separately, but on tide-dominated shores (tidal range ≫ wave height) the wave zone is absent and the emergent and submergent tidal zones overlap substantially, forming the traditional “intertidal zone”. We conclude by incorporating time and space in the model to illustrate variability in the physical conditions and zonation on littoral shores. The wave:tide physical zonation model is a unifying framework that can facilitate our understanding of physical conditions on littoral shores whether tropical or temperate, marine or lentic. PMID:24109544
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White matter microstructure damage in tremor-dominant Parkinson's disease patients.
Luo, ChunYan; Song, Wei; Chen, Qin; Yang, Jing; Gong, QiYong; Shang, Hui-Fang
2017-07-01
Resting tremor is one of the cardinal motor features of Parkinson's disease (PD). Several lines of evidence suggest resting tremor may have different underlying pathophysiological processes from those of bradykinesia and rigidity. The current study aims to identify white matter microstructural abnormalities associated with resting tremor in PD. We recruited 60 patients with PD (30 with tremor-dominant PD and 30 with nontremor-dominant PD) and 26 normal controls. All participants underwent clinical assessment and diffusion tensor MRI. We used tract-based spatial statistics to investigate white matter integrity across the entire white matter tract skeleton. Compared with both healthy controls and the nontremor-dominant PD patients, the tremor-dominant PD patients were characterized by increased mean diffusivity (MD) and axial diffusivity (AD) along multiple white matter tracts, mainly involving the cerebello-thalamo-cortical (CTC) pathway. The mean AD value in clusters with significant difference was correlated with resting tremor score in the tremor-dominant PD patients. There was no significant difference between the nontremor-dominant PD patients and controls. Our results support the notion that resting tremor in PD is a distinct condition in which significant microstructural white matter changes exist and provide evidence for the involvement of the CTC in tremor genesis of PD.
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NASA Astrophysics Data System (ADS)
Alvarez, M. C.; Flores, J. A.; Sierro, F. J.; Diz, P.; Frances, G.; Pelejero, C.; Grimalt, J.
2003-04-01
A combined study of coccolithophore assemblages and biomarkers in gravity core VIR-18 (380 cm long) located in the Ria de Vigo (42°14.07 N, 8°47.37W) at a water depth of 45 m situated in the Ria de Vigo (SW Spain) has allowed us to reconstruct the paleoenvironmental conditions for the last 3000 years. The quantitative distribution of coccolithophore species points to three different intervals along the core, dated by AMS radiocarbon measurements. A first interval (I; ca. 975 BC-252 AD), characterized by high abundances of Calcidiscus leptoporus and Gephyrocapsa muellerae, features moderate temperatures, suggesting a transition from a warmer to a cooler period. A second interval (II; ca. 252-1368 AD), characterized by the dominance of Coccolithus pelagicus, Helicosphaera carteri and Syracosphaera spp., and a high concentration of hexacosanol linked to terrestrial input, is interpreted as having been a humid period with prevailing runoff. The third interval (III; ca. 1368 AD-1950) is characterized by a high abundance of Gephyrocapsa oceanica, high values of alkenones and low values of hexacosanol, and is interpreted as a period of dominance of oceanic conditions within the Ria. Taking into account the ocean-atmospheric system existing in the region studied, we propose an alternance in the North Atlantic Oscillation (NAO) at millennial time scale. A developed upwelling and a good Ria-ocean connection in the warmer Interval I, suggest a NAO+ phase influenced by a Hypsithermal period. The occurrence of the humid and relatively warm Interval II is consistent with a negative phase in the NAO, as well as a relative restriction in ocean-Ria exchange. Interval III, which was dryer and more productive, suggests the dominance of a positive phase in the NAO, with a more intense oceanic connection and more energized upwelling.
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The Rare Togetherness of Bladder Leiomyoma and Neurofibromatosis.
Yucel, Cem; Budak, Salih; Kisa, Erdem; Celik, Orcun; Kozacioglu, Zafer
2018-01-01
Neurofibromatosis Type 1 (Von Recklinghausen disease) is a common, autosomal dominant hereditary disorder characterized by involvement of multiple tissues derived from the neural crest. Urinary system involvement in neurofibromatosis is a rare condition. Leiomyoma of the bladder is a rare benign mesenchymal tumor. In this case, our experience and approach regarding the bladder leiomyoma development in a patient diagnosed with neurofibromatosis are presented and the literature data has been reviewed.
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Composting oily sludges: Characterizing microflora using randomly amplified polymorphic DNA
DOE Office of Scientific and Technical Information (OSTI.GOV)
Persson, A.; Quednau, M.; Ahrne, S.
1995-12-31
Laboratory-scale composts in which oily sludge was composted under mesophilic conditions with amendments such as peat, bark, and fresh or decomposed horse manure, were studied with respect to basic parameters such as oil degradation, respirometry, and bacterial numbers. Further, an attempt was made to characterize a part of the bacterial flora using randomly amplified polymorphic DNA (RAPD). The compost based on decomposed horse manure showed the greatest reduction of oil (85%). Comparison with a killed control indicated that microbial degradation actually had occurred. However, a substantial part of the oil was stabilized rather than totally broken down. Volatiles, on themore » contrary, accounted for a rather small percentage (5%) of the observed reduction. RAPD indicated that a selection had taken place and that the dominating microbial flora during the active degradation of oil were not the same as the ones dominating the different basic materials. The stabilized compost, on the other hand, had bacterial flora with similarities to the ones found in peat and bark.« less
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Iyer, Vidyashankara; Hu, Lei; Schanté, Carole E; Vance, David; Chadwick, Chrystal; Jain, Nishant Kumar; Brey, Robert N; Joshi, Sangeeta B; Volkin, David B; Andra, Kiran K; Bann, James G; Mantis, Nicholas J; Middaugh, C Russell
2013-11-01
Dominant Negative Inhibitor (DNI) is a translocation-deficient homolog of recombinant protective antigen of Bacillus anthracis that is a candidate for a next generation anthrax vaccine. This study demonstrates that the biophysical characteristics of the DNI protein stored in lyophilized form at 4°C for 8 y were similar to recombinant Protective Antigen (rPA). To provide information on the accelerated stability of DNI, samples in the lyophilized form were subjected to thermal stress (40°C and 70°C for up to 4 weeks) and thoroughly evaluated using various biophysical and chemical characterization techniques. Results demonstrate preserved structural stability of the DNI protein under extreme conditions, suggesting long-term stability can be achieved for a vaccine that employs DNI, as desired for a biodefense countermeasure. Furthermore, the biological activity of the stressed DNI bound to the adjuvant Alhydrogel (®) was evaluated in mice and it was found that the immunogenicity DNI was not affected by thermal stress.
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The effect of nitrogen loading on a brackish estuarine faunal community: A stable isotope approach
Keats, R.A.; Osher, L.J.; Neckles, H.A.
2004-01-01
Coastal ecosystems worldwide face increased nutrient enrichment from shoreline and watershed development and atmospheric pollution. We investigated the response of the faunal community of a small microtidal estuary dominated by Ruppia maritima (widgeon grass) in Maine, United States, to increased nitrogen loading using an in situ mesocosm enrichment experiment. Community response was characterized by assessing quantitative shifts in macroin-vertebrate community composition and identifying changes in food web structure using stable carbon and nitrogen isotope ratios of producers and consumers. The community was dominated by brackish water invertebrates including midge larvae, oligochaetes, damselfly larvae, amphipods, and ostracods. Experimental nutrient additions resulted in significantly lower densities of herbivorous chironomids and predatory damselflies and greater densities of deposit feeding oligochaetes. Grazing midge larvae (Chironomidae: Dicrotendipes, Cricotopus) consumed epiphytic algae under both natural and enriched conditions. Deposit feeding Chironomus was dependent on allochthonous sources of detritus under natural conditions and exhibited a shift to autochthonous sources of detritus under enriched conditions. Predatory Enallagma primarily consumed grazing chironomids under all but the highest loading conditions. Experimental nutrient loading resulted in an increase in generalist deposit feeders dependent on autochthonous sources of detritus.
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The hydrogeochemistry of argillaceous rock formations at the Horonobe URL site, Japan
NASA Astrophysics Data System (ADS)
Hama, K.; Kunimaru, T.; Metcalfe, R.; Martin, A. J.
A hydrogeochemical investigation is being carried out as part of the Horonobe underground research laboratory (URL) project in Japan. The main aims are to: (1) investigate an actual example of a geological environment in a sedimentary rock formation in Japan; and (2) to confirm the reliability of generic technologies that may in future be applied during the geological disposal of high level radioactive waste. The main rock formations being characterized are the marine Wakkanai and Koetoi Formations (Miocene to Pliocene), consisting dominantly of siliceous shales (porcelanites) and diatomaceous shales respectively. These formations are located within the Tempoku Basin, within a back-arc tectonic setting. Rock sequences of this kind occur widely in Japan and throughout the northern Pacific region. However, prior to the present study, there was relatively little information concerning the processes controlling in situ chemical conditions and groundwater flow in such settings. Chemical data was obtained for both pumped waters and squeezed porewaters in order to characterize the hydrogeochemistry of these argillaceous rock formations. The in situ chemical conditions, residence time of the groundwaters and the evolution processes of the groundwaters were investigated. Generally, at each locality studied, shallower groundwaters are fresh and have Na-HCO 3 dominated chemistry. Deeper groundwaters are saline (TDS up to about 22,000 mg/l) and have Na-Cl dominated chemistry. However, lateral gradients in salinity are also recognized, with salinity contours in the Na-Cl dominated saline water (having TDS > 10,000 mg/l) probably varying in elevation by at least 250 m. Further investigations are required to confirm the origins of the groundwater salinity, but the Na-Cl dominated groundwater chemistry is provisionally explained as a consequence of the dilution of fossil seawater, accompanied by diagenetic water-rock reactions. The vertical and lateral salinity gradients can potentially be used to test the validity of coupled groundwater flow models. A conceptual model is tentatively suggested in which the spatial distribution and frequency of fractures helps to control the spatial distribution of groundwater salinity. Future investigations will clarify the timing of flow, the flow directions and the characteristics of the flow paths.
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Axenfeld-Rieger syndrome (ARS): A review and case report.
Waldron, Jennie M; McNamara, Clare; Hewson, Antonia R; McNamara, C M
2010-01-01
Axenfeld-Rieger syndrome (ARS) is a rare, autosomal dominant condition characterized by ocular, craniofacial, dental, and periumbilical abnormalities. Relatively little information exists on this syndrome within the dental literature despite the fact that midface hypoplasia and maxillary hypodontia are classical presenting features of this syndrome. This is a case report of a 7-year-old Caucasian female with ARS who presented with significant ocular and dental anomalies. She was also found to have osteopenia. Her dental condition is described, her immediate treatment is shown, and her long-term treatment needs are discussed. ©2010 Special Care Dentistry Association and Wiley Periodicals, Inc.
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The Rare Togetherness of Bladder Leiomyoma and Neurofibromatosis
Celik, Orcun; Kozacioglu, Zafer
2018-01-01
Neurofibromatosis Type 1 (Von Recklinghausen disease) is a common, autosomal dominant hereditary disorder characterized by involvement of multiple tissues derived from the neural crest. Urinary system involvement in neurofibromatosis is a rare condition. Leiomyoma of the bladder is a rare benign mesenchymal tumor. In this case, our experience and approach regarding the bladder leiomyoma development in a patient diagnosed with neurofibromatosis are presented and the literature data has been reviewed. PMID:29736289
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NASA Astrophysics Data System (ADS)
Loeb, Valerie; Hofmann, Eileen E.; Klinck, John M.; Holm-Hansen, Osmund
2010-04-01
The South Shetland-Elephant Island and Bransfield Strait region of the West Antarctic Peninsula is an important spawning and nursery ground of Antarctic krill ( Euphausia superba) and is an important source of krill to the Southern Ocean. Krill reproductive and recruitment success, hence supply of krill to predator populations locally and in downstream areas, are extremely variable on interannual and longer time scales. Interannual ecosystem variability in this region has long been recognized and thought related to El Niño Southern Oscillation (ENSO) events, but understanding of how has been limited by the hydrographic complexity of the region and lack of appropriate ocean-atmosphere interaction models. This study utilizes multidisciplinary data sets collected in the region from 1990 to 2004 by the U.S. Antarctic Living Marine Resources (AMLR) Program. We focus on hydrographic conditions associated with changes in the distribution, abundance and composition of salp- and copepod-dominated zooplankton assemblages during 1998 and 1999, years characterized respectively by a strong El Niño event and La Niña conditions. We provide detailed analyses of hydrographic, biological and ecological conditions during these dichotomous years in order to identify previously elusive oceanographic processes underlying ecosystem variability. We found that fluctuations between salp-dominated coastal zooplankton assemblages and copepod-dominated oceanic zooplankton assemblages result from the relative influence of Weddell Sea and oceanic waters and that these fluctuations are associated with latitudinal movement of the Southern Antarctic Circumpolar Current Front (sACCf). Latitudinal movements of the sACCf can be explained by meridional atmosphere teleconnections instigated in the western tropical Pacific Ocean by ENSO variability and are consistent with out-of-phase forcing in the South Pacific and South Atlantic Oceans by the Antarctic Dipole high-latitude climate mode. During El Niño decreased northwest winds, equatorward movement of the sACCf and an intensified Weddell Gyre allow Weddell Sea water to flow into eastern Bransfield Strait. During these periods mixing between oceanic and coastal waters is reduced, chlorophyll a concentrations are low, salps numerically dominate the zooplankton, and krill recruitment success is poor. During La Niña increased and more frequent northwest winds and poleward movement of the sACCf allows increased influence of oceanic waters and mixing of these with cold coastal waters. These periods are characterized by numerical dominance of copepods, elevated concentrations of oceanic zooplankton taxa and phytoplankton blooms that promote krill reproduction and recruitment success. Hydrographic and ecological changes after the 1998 El Niño are associated with a shift from frequent El Niños to the prevalence of La Niña and neutral conditions and conform to a decadal-scale climate regime shift in the Antarctic Peninsula region.
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Environmental controls on chemoautotrophic primary producers at deep-sea vents
NASA Astrophysics Data System (ADS)
Le Bris, Nadine; Mullineaux, Lauren; Sievert, Stefan
2014-05-01
High biomasses and fast growth rates of dominant chemosynthetic species characterize hydrothermal ecosystems, raising the issue of their contribution to energy transfer and carbon cycling in the deep-sea. Addressing this issue, however, needs to account for the temporal instability of hydrothermal systems, both, in terms of biological colonization and habitat conditions. Volcanic eruptions on mid-ocean ridges offer the opportunity to investigate the environmental conditions favoring the successive modes of chemoautotrophic primary production (i.e. free living microbes and symbiotic invertebrates). In that perspective, habitat-scale approaches distinguish from vent field-scale approaches based on fluid composition and provide relevant information on environmental constraints exerted at different stages of colonization focusing on parameters linked with physiological limits and available energy. Investigation of habitat physicochemical properties along a typical successional sequence of recolonization at 9°50'N EPR diffuse-flow vents, between 2006 and 2014, was performed in order to examine potential changes in environmental features associated with chemoautotrophic primary producers, from early microbial colonizers to symbiotic invertebrates. Combined in situ measurements of temperature, pH and hydrogen sulfide were used and their variability documented over a series of assemblages characterizing recolonization stages. The distributions of mature assemblages of dominant invertebrate species associate with substantial differences in habitat conditions, pointing to a strong influence of habitat properties on potential productivity. Among the differences observed, however, the amplitude and rate of environmental fluctuation appear more important than average conditions in the succession, highlighting the role of spatial heterogeneity and temporal dynamics as a control on primary producers. Invertebrate species acting as engineer species are expected to play a primary role in the rate of organic carbon formed over the lifetime of a vent and potentially transferred to adjacent ecosystems.
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Paleogeography of the upper Paleozoic basins of southern South America: An overview
NASA Astrophysics Data System (ADS)
Limarino, Carlos O.; Spalletti, Luis A.
2006-12-01
The paleogeographic evolution of Late Paleozoic basins located in southern South America is addressed. Three major types of basins are recognized: infracratonic or intraplate, arc-related, and retroarc. Intraplate basins (i.e., Paraná, Chaco-Paraná, Sauce Grande-Colorado, and La Golondrina) are floored by continental or quasi-continental crust, with low or moderate subsidence rates and limited magmatic and tectonic activity. Arc-related basins (northern and central Chile, Navidad-Arizaro, Río Blanco, and Calingasta-Uspallata basins and depocenters along Chilean Patagonia) show a very complex tectonic history, widespread magmatic activity, high subsidence rates, and in some cases metamorphism of Late Paleozoic sediments. An intermediate situation corresponds to the retroarc basins (eastern Madre de Dios, Tarija, Paganzo, and Tepuel-Genoa), which lack extensive magmatism and metamorphism but in which coeval tectonism and sedimentation rates were likely more important than those in the intraplate region. According to the stratigraphic distribution of Late Paleozoic sediments, regional-scale discontinuities, and sedimentation pattern changes, five major paleogeographic stages are proposed. The lowermost is restricted to the proto-Pacific and retroarc basins, corresponds to the Mississippian (stage 1), and is characterized by shallow marine and transitional siliciclastic sediments. During stage 2 (Early Pennsylvanian), glacial-postglacial sequences dominated the infracratonic (or intraplate) and retroarc basins, and terrigenous shallow marine sediments prevailed in arc-related basins. Stage 3 (Late Pennsylvanian-Early Cisuralian) shows the maximum extension of glacial-postglacial sediments in the Paraná and Sauce Grande-Colorado basins (intraplate region), whereas fluvial deposits interfingering with thin intervals of shallow marine sediments prevailed in the retroarc basins. To the west, arc-related basins were dominated by coastal to deep marine conditions (including turbiditic successions). In the Late Cisuralian (stage 4), important differences in sedimentation patterns are registered for the western arc-related basins and eastern intraplate basins. The former were locally dominated by volcaniclastic sediments or marine deposits, and the intraplate basins are characterized by shallow marine conditions punctuated by several episodes of deltaic progradation. Finally, in the Late Permian (stage 5), volcanism and volcaniclastic sedimentation dominated in basins located along the western South American margin. The intraplate basins in turn were characterized by T-R cycles composed of shallow marine, deltaic, and fluvial siliciclastic deposits.
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NASA Astrophysics Data System (ADS)
Cohuo, Sergio; Macario, Laura; Sylvestre, Florence; Pailles, Christine; Kutterolf, Steffen; Pérez, Liseth; Curtis, Jason; Schwalb, Antje
2016-04-01
Heinrich stadials (HS) are recognized as fast-acting "pulses" of global rapid environmental change that affect the climate and cause alterations in species composition and distribution. Past changes in aquatic ecosystems due to HSs may be an analog for future disruptions caused by climate change in the Neotropics. Our aim is to provide high resolution water temperature and conductivity records for HSs (HS1-HS6) in the northern Neotropics and identify their effects on aquatic communities. We analyzed the geochemical sediment composition (TIC and TOC) and quantified ostracode and diatom fossil abundances in cores PI-6 (73m long, from71m water depth) and PI-2 (84m long and from 54m water depth) from Lake Petén Itzá, Guatemala. Sediment cores were dated using a combination of radiocarbon and tephra chronology. Taxonomical analysis revealed that the ostracode fauna through all HSs had an exclusive tropical composition, reflecting that water temperatures remained warm, likely within the current tolerant range (26-33°C) observed for modern species inhabiting Central American lakes. Because of these warm conditions on the lake ecosystem, we infer that there was not a large change in temperatures as suggested by Hodell et al. (2012), but a small on such at the 5°C suggested by Correa-Metrio et al. (2012). Sediments during HSs are dominated by gypsum, suggesting variable water solute composition. Low TIC and TOC values during HSs indicate that these variations resulted from a decrease in precipitation and prevailing dry conditions. Bioproxy composition however, suggests sharp climatic transitions from humid to arid (HS5, HS3and H1) and from arid to humid (HS4, HS2). HS6 (63.2-60.1 ka BP) was characterized by domination of benthic diatoms and nektobenthic Cypria petenensis, Paracythereis opesta and Pseudocandona sp. ostracode species, suggesting low lake levels with predominance of littoral conditions. HS5 (50-47ka BP), HS3 (32.7-31.3ka BP) and HS1 (18-15.6ka BP) were characterized by rapid changes from planktonic to benthic diatoms, suggesting deepening of water. These transitions occurred at the onset of HS5, the middle-end of HS3 and the end of HS1. Lake ecosystem, thus had different response to these events. Ostracode community during HS5 was characterized by the nektobenthic and conductivity tolerant ostracodes Cypridopsis vidua, C. petenensis, P. opesta and Heterocypris putei suggesting low lake levels prevailing with high conductivity. During HS1 and HS3 ostracode assemblages was mostly dominated by nektobenthic species with the emergence of conductivity-tolerant H. putei at the end of the periods. Thus, humid conditions dominated during these HSs, but they ended with a rapid transition to a dry environment with increasing of conductivity. HS4 (38.3-40.2ka BP) and HS2 (24.3-26.5ka BP) showed abrupt changes from benthic to planktonic diatoms suggesting increasing water depth due to increased precipitation rates. The HS4 ostracode assemblage was initially dominated by benthic species such as Pseudocandona sp and Darwinula stevensoni but later on only necktobenthic species were present. Similar patter occurred during HS2, but the dominance of littoral-related species lasted longer, suggesting predominant dry conditions and low lake levels. The occurrence of necktobenthic species at the end of the period suggests increase of humidity. Our study highlights good agreement of the cores analyzed from different water depths and the applicability of multiproxy approach for a high resolution interpretation of past climate forces in northern Neotropics.
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NASA Astrophysics Data System (ADS)
Movahednejad, E.; Ommi, F.; Nekofar, K.
2013-04-01
The structures of the port injector spray dominates the mixture preparation process and strongly affect the subsequent engine combustion characteristics over a wide range of operating conditions in port-injection gasoline engines. All these spray characteristics are determined by particular injector design and operating conditions. In this paper, an experimental study is made to characterize the breakup mechanism and spray characteristics of a injector with multi-disc nozzle (SAGEM,D2159MA). A comparison was made on injection characteristics of the multi-hole injectors and its effects on various fuel pressure and temperature. The distributions of the droplet size and velocity and volume flux were characterized using phase Doppler anemometry (PDA) technique. Through this work, it was found that the injector produces a finer spray with a wide spray angle in higher fuel pressure and temperature.
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NASA Astrophysics Data System (ADS)
Kozina, Antonela; Čačija, Maja; Igrc Barčić, Jasminka; Bažok, Renata
2013-07-01
The aims of this work were: (i) to determine the distribution and abundance of Agriotes lineatus, (ii) correlate the abundance with the prevailing climatic conditions to establish how temperature and rainfall are influencing the dominance, and (iii) to determine the activity characteristics of the adults. Investigations were conducted in 17 fields grouped in four regions characterized by different climatic conditions. Using sex pheromone traps the most important Agriotes species ( A. lineatus L., A. sputator L., A. obscurus L., A. brevis Cand. and A. ustulatus Schall.) were collected. The monitoring period for A. brevis, A. sputator, A. lineatus and A. obscurus was from the 18th to the 32nd, and for A. ustulatus from the 23rd to the 32nd week of the year. A total of 61,247 individuals Agriotes were captured, of which 24,916 individuals were A. lineatus. Abundance and dominance of A. lineatus were significantly higher in the region of Zagreb compared to other regions. Moving east, rainfall decreased and temperatures increased and associated with that the abundance and dominance indices were lower. It was determined that the abundance of A. lineatus was negatively correlated with average air temperature ( r = -0.5201; p < 0.0001). Compared to earlier data from the region of Zagreb the dominance index decreased. This might be a result of climate change as established average yearly temperature in these regions increased for 1.04 °C compared to the average data for the period 1961-1990. Other potentially damaging Agriotes species ( A. brevis and A. ustulatus) were also present in high abundances in some micro-regions.
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NASA Astrophysics Data System (ADS)
Wesolowski, Lindsey J. N.; Buatois, Luis A.; Mángano, M. Gabriela; Ponce, Juan José; Carmona, Noelia B.
2018-05-01
Shorefaces can display strong facies variability and integration of sedimentology and ichnology provides a high-resolution model to identify variations among strongly storm-dominated (high energy), moderately storm-affected (intermediate energy), and weakly storm-affected (low energy) shoreface deposits. In addition, ichnology has proved to be of help to delineate parasequences as trace-fossil associations are excellent indicators of environmental conditions which typically change along the depositional profile. Shallow-marine deposits and associated ichnofaunas from the Mulichinco Formation (Valanginian, Lower Cretaceous) in Puerta Curaco, Neuquén Basin, western Argentina, were analyzed to evaluate stress factors on shoreface benthos and parasequence architecture. During storm-dominated conditions, the Skolithos Ichnofacies prevails within the offshore transition and lower shoreface represented by assemblages dominated by Thalassinoides isp. and Ophiomorpha irregulaire. Under weakly storm-affected conditions, the Cruziana Ichnofacies is recognized, characterized by assemblages dominated by Thalassinoides isp. and Gyrochorte comosa in the offshore transition, and by Gyrochorte comosa within the lower shoreface. Storm-influenced conditions yield wider ichnologic variability, showing elements of both ichnofacies. Storm influence on sedimentation is affected by both allogenic (e.g. tectonic subsidence, sea-level, and sediment influx) and autogenic (e.g. hydrodynamic) controls at both parasequence and intra-parasequence scales. Four distinct types of parasequences were recognized, strongly storm-dominated, moderately storm-affected, moderately storm-affected - strongly fair-weather reworked, and weakly storm-affected, categorized based on parasequence architectural variability derived from varying degrees of storm and fair-weather wave influence. The new type of shoreface described here, the moderately storm-affected - strongly fair-weather reworked shoreface, features storm deposits reworked thoroughly by fair-weather waves. During fair-weather wave reworking, elements of the Cruziana Ichnofacies are overprinted upon relict elements of the Skolithos Ichnofacies from previous storm induced deposition. This type of shoreface, commonly overlooked in past literature, expands our understanding of the sedimentary dynamics and stratigraphic architecture in a shoreface susceptible to various parasequence and intra-parasequence scale degrees of storm and fair-weather wave influence.
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Yu, Hwa-Lung; Lin, Yuan-Chien; Kuo, Yi-Ming
2015-09-01
Understanding the temporal dynamics and interactions of particulate matter (PM) concentration and composition is important for air quality control. This paper applied a dynamic factor analysis method (DFA) to reveal the underlying mechanisms of nonstationary variations in twelve ambient concentrations of aerosols and gaseous pollutants, and the associations with meteorological factors. This approach can consider the uncertainties and temporal dependences of time series data. The common trends of the yearlong and three selected diurnal variations were obtained to characterize the dominant processes occurring in general and specific scenarios in Taipei during 2009 (i.e., during Asian dust storm (ADS) events, rainfall, and under normal conditions). The results revealed the two distinct yearlong NOx transformation processes, and demonstrated that traffic emissions and photochemical reactions both critically influence diurnal variation, depending upon meteorological conditions. During an ADS event, transboundary transport and distinct weather conditions both influenced the temporal pattern of identified common trends. This study shows the DFA method can effectively extract meaningful latent processes of time series data and provide insights of the dominant associations and interactions in the complex air pollution processes. Copyright © 2014 Elsevier Ltd. All rights reserved.
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Swanson, H L
1987-01-01
Three theoretical models (additive, independence, maximum rule) that characterize and predict the influence of independent hemispheric resources on learning-disabled and skilled readers' simultaneous processing were tested. Predictions related to word recall performance during simultaneous encoding conditions (dichotic listening task) were made from unilateral (dichotic listening task) presentations. The maximum rule model best characterized both ability groups in that simultaneous encoding produced no better recall than unilateral presentations. While the results support the hypothesis that both ability groups use similar processes in the combining of hemispheric resources (i.e., weak/dominant processing), ability group differences do occur in the coordination of such resources.
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Modulating effects in learned helplessness of dyadic dominance-submission relations.
Díaz-Berciano, Cristina; de Vicente, Francisco; Fontecha, Elisa
2008-01-01
In this experiment, learned helplessness was studied from an ethological perspective by examining individual differences in social dominance and its influence on the effects of helplessness. Ninety animals were used, 30 randomly selected and 60 selected because of their clear dominance or submission. Each condition (dominant, submissive, and random) was distributed in three subgroups corresponding to the triadic design. The test consisted of an escape/avoidance task. The results showed that the animals in the uncontrollable condition performed worse than those in the controllable and no treatment conditions. Social submission and dominance reduced vulnerability of the subjects against learned helplessness. Submission had a facilitating effect on subsequent learning, independently of whether pretreatment was controllability or uncontrollability. Learned mastery was observed in the submissive condition, because submission benefited the subjects in the controllable condition in comparison with the untreated subjects, and dominance impaired the subjects in the controllable condition. Copyright 2007 Wiley-Liss, Inc.
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The insidious effect of diatoms on copepod reproduction
NASA Astrophysics Data System (ADS)
Miralto, A.; Barone, G.; Romano, G.; Poulet, S. A.; Ianora, A.; Russo, G. L.; Buttino, I.; Mazzarella, G.; Laabir, M.; Cabrini, M.; Giacobbe, M. G.
1999-11-01
The productive regions of the ocean are characterized by seasonal blooms of phytoplankton which are generally dominated by diatoms. This algal class has, therefore, traditionally been regarded as providing the bulk of the food that sustains the marine food chain to top consumers and important fisheries. However, this beneficial role has recently been questioned on the basis of laboratory studies showing that although dominant zooplankton grazers such as copepods feed extensively on diatoms, the hatching success of eggs thus produced is seriously impaired. Here we present evidence from the field showing that the hatching success of wild copepods feeding on a diatom-dominated bloom is also heavily compromised, with only 12% of the eggs hatching compared with 90% in post-bloom conditions. We report on the structure of the three aldehydes isolated from diatoms that are responsible for this biological activity, and show that these compounds arrest embryonic development in copepod and sea urchin bioassays and have antiproliferative and apoptotic effects on human carcinoma cells.
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Melean, German; Velasco, Ana; Hernández-Imaz, Elisabete; Rodríguez-Álvarez, Francisco Javier; Martín, Yolanda; Valero, Ana; Hernández-Chico, Concepción
2012-08-01
Germline mutations in the SMARCB1 gene cause familial schwannomatosis, a condition characterized by the presence of multiple schwannomas, although mutations in SMARCB1 have also been associated with rhadboid tumor predisposition syndrome 1 (RTPS1). Both schwannomatosis and RTPS1 are autosomal dominant conditions that predispose individuals to develop distinct types of tumors. We clinically and genetically characterized two families with schwannomatosis associated with SMARCB1 mutations. Eight affected members of these families developed different numbers of schwannomas and/or meningiomas at distinct ages, evidence that meningiomas are variably expressed in this condition. We identified two germline mutations in SMARCB1 associated with the familial disease, c.233-1G>A and the novel c.207_208dupTA mutation, which both proved to affect the main SMARCB1 isoforms at the RNA level distinctly. Interestingly, the c.207_208dupTA mutation had no effect on the coding sequence, pre-mRNA splicing or the level of expression of the SMARCB1 isoform 2. Furthermore, SMARCB1 isoforms harboring a premature termination codon were largely eliminated via the nonsense-mediated mRNA decay pathway. Our results highlight the importance of RNA-based studies to characterize SMARCB1 germline mutations in order to determine their impact on protein expression and gain further insight into the genetic basis of conditions associated with SMARCB1 mutations.
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Zhang, Fang; Yang, Jing-Hua; Dai, Kun; Chen, Yun; Li, Qiu-Rong; Gao, Fa-Ming; Zeng, Raymond J
2016-02-01
The microbial community compositions of a chemostat enriched in a thermophilic (55 °C) mixed culture fermentation (MCF) for hydrogen production under different operational conditions were revealed in this work by integrating denaturing gradient gel electrophoresis (DGGE), Illumina Miseq high-throughput sequencing, and 16S rRNA clone library sequencing. The results showed that the community structure of the enriched cultures was relatively simple. Clones close to the genera of Thermoanaerobacter and/or Bacillus mainly dominated the bacteria. And homoacetogens and archaea were washed out and not detected even by Illumina Miseq high-throughput sequencing which supported the benefit for hydrogen production. On the other hand, the results revealed that the metabolic shift was clearly associated with the change of dominated bacterial groups. The effects of hydrogen partial pressure (PH2) and pH from 4.0 to 5.5 on the microbial compositions were not notable and Thermoanaerobacter was dominant, thus, the metabolites were also not changed. While Bacillus, Thermoanaerobacter and Propionispora hippei dominated the bacteria communities at neutral pH, or Bacillus and Thermoanaerobacter dominated at high influent glucose concentrations, consequently the main metabolites shifted to acetate, ethanol, propionate, or lactate. Thereby, the effect of microbial composition on the metabolite distribution and shift shall be considered when modeling thermophilic MCF in the future.
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Feng, Junran; Fan, Hailong; Zha, Dao-An; Wang, Le; Jin, Zhaoxia
2016-10-11
Recent studies demonstrated that polydopamine (PDA) coating is universal to nearly all substrates, and it endows substrates with biocompatibility, postfunctionality, and other useful properties. Surface chemistry of PDA coating is important for its postmodifications and applications. However, there is less understanding of the formation mechanism and surface functional groups of PDA layers generated in different conditions. Halloysite is a kind of clay mineral with tubular nanostructure. Water-swellable halloysite has unique reactivity. In this study, we have investigated the reaction of dopamine in the presence of water-swellable halloysite. We have tracked the reaction progresses in different pH environments by using UV-vis spectroscopy and surface-enhanced Raman spectroscopy (SERS). The surface properties of PDA on halloysite were clarified by X-ray photoelectron spectroscopy (XPS), SERS, Fourier transform infrared (FTIR) characterizations, zeta potential, surface wettability, and morphological characterizations. We noticed that the interaction between halloysite surface and dopamine strongly influences the surface functionality of coated PDA. In addition, pH condition further modulates surface functional groups, resulting in less content of secondary/aromatic amine in PDA generated in weak acidic environment. This study demonstrates that the formation mechanism of polydopamine becomes complex in the presence of inorganic nanomaterials. Substrate property and reaction condition dominate the functionality of obtained PDA together.
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1999-10-01
also ruled out as confounders. Polycystic ovaries and endometriosis, possible indications for using OCs, were evaluated as potential confounders, but...Cn polymorphism In the MTHFR gone with breast and/or A irne genomic deletion of hMLHI in a family with Muir-Torre syndrome . J.J.P.canoer risk In...reduion I te,1Teth-A Muir-Torre syndrome (MTS) is an autosomal dominant condition characterized by se- Miylonetetrathydrofoiate reductase (MTHFR
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Cuoco, Valentina; Colletti, Chiara; Anastasia, Annalisa; Weisz, Filippo; Bersani, Giuseppe
2015-01-01
Shared psychotic disorder (folie à deux) is a rare condition characterized by the transmission of delusional aspects from a patient (the "dominant partner") to another (the "submissive partner") linked to the first by a close relationship. We report the case of two Moroccan sisters who have experienced a combined delusional episode diagnosed as shared psychotic disorder. In these circumstances, assessment of symptoms from a cross-cultural perspective is a key factor for proper diagnostic evaluation.
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NASA Astrophysics Data System (ADS)
Purdy, A. J.; Fisher, J.; Goulden, M.; Randerson, J. T.; Famiglietti, J. S.
2017-12-01
Plants link the carbon and water cycles through photosynthesis and evapotranspiration (ET). When plants take in CO2 for photosynthesis, water evaporates to the atmosphere. This exchange of carbon and water is sensitive to a number of environmental variables including: soil water availability, temperature, atmospheric water vapor, and radiation. When the atmospheric demand for water is high, plants avoid hydraulic failure by regulating the amount of water exiting leaves at the expense of inhibiting carbon uptake. Over time, stress caused by this response limits plant growth and can even result in death by carbon starvation. With increasing atmospheric demand for water, impending expansion of arid regions, and more frequent droughts, understanding how vegetation responds to regulate photosynthesis and ET is important to quantify potential feedbacks between the carbon and water cycles. Despite its importance, to what extent plants respond to stressful conditions is an open science question. An important step forward is to characterize the dominant controls in these stress events and identify geographic areas that are vulnerable to climate change. The 2015-2016 El Nino and subsequent 2016-2017 La Nina transition provides an opportunity to quantify the extent and magnitude of vegetation regulation of these carbon and water variables in response to changes in environmental conditions. We present results from a space-based analysis using global observations of solar induced fluorescence (SIF) from the Orbiting Carbon Observatory-2 (OCO-2), soil moisture from Soil Moisture Active Passive (SMAP), and two widely used ET models (PT-JPL and MOD-16) to characterize the dominant controls on gross primary production and ET.
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NASA Astrophysics Data System (ADS)
Chi, X.; Winderlich, J.; Mayer, J.-C.; Panov, A. V.; Heimann, M.; Birmili, W.; Heintzenberg, J.; Cheng, Y.; Andreae, M. O.
2013-07-01
Siberia is one of few background regions in the Northern Hemisphere where the atmosphere may sometimes approach pristine conditions. We present the time series of aerosol and carbon monoxide (CO) measurements between September~2006 and December 2010 at the Zotino Tall Tower Observatory (ZOTTO) in Central Siberia (61° N; 90° E). We investigate the seasonal, weekly and diurnal variations of aerosol properties (including absorption and scattering coefficients and derived parameters, like equivalent black carbon (BCe), Ångström exponent, single scattering albedo, and backscattering ratio) and the CO mixing ratios. Criteria were established to distinguish polluted and near-pristine air masses and characterize them separately. Depending on the season, 15-47% of the sampling time at ZOTTO was representative of a clean atmosphere. The summer pristine data indicates that primary biogenic and/or secondary organic aerosol formation are quite strong particle sources in the Siberian Taiga. The summer seasons 2007-2008 are dominated by an Aitken mode of 80 nm size, whereas the summer 2009 with prevailing easterly winds produced aerosols in the accumulation mode around 200 nm size. We found these differences mainly related to air temperature, in parallel with production rates of biogenic volatile organic compounds (VOC). In winter, the footprint and aerosol size distribution (with a peak at 160 nm) of the clean background air are characteristic for aged aerosols from anthropogenic sources at great distances from ZOTTO and diluted biofuel burning emissions from heating. The wintertime polluted air originates from the large cities to the south and southwest of the site; these aerosols have a dominant mode around 100 nm, and the Δ BCe/Δ CO ratio of 7-11 ng m-3 ppb-1 suggests dominant contributions from coal and biofuel burning for heating. During summer, anthropogenic emissions are the dominant contributor to the pollution aerosols at ZOTTO, while only 12% of the polluted events are classified as biomass burning dominated, but then often associated with extremely high CO concentrations and aerosol absorption coefficients. Two biomass-burning case studies revealed different Δ BCe/Δ CO ratios from different fire types, with the agricultural fires in April 2008 yielding a very high ratio of 21 ng m-3 ppb-1. Overall, we find that anthropogenic sources dominate the aerosol population at our site most of the time, even during nominally clean episodes in winter, and that near-pristine conditions are encountered only episodically in the growing season.
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A novel spatially-explicit condition for the onset of waterborne diseases in complex environments
NASA Astrophysics Data System (ADS)
Mari, L.; Gatto, M.; Bertuzzo, E.; Casagrandi, R.; Righetto, L.; Rodriguez-Iturbe, I.; Rinaldo, A.
2012-12-01
In spatial models of waterborne infections the condition that all the local reproduction numbers be larger than one is neither necessary nor sufficient for outbreaks to occur. Here, to properly determine epidemic onset conditions, we examine the transition from stable to unstable of the disease-free equilibrium of a system of nonlinear differential equations characterizing the evolution of susceptible and infected individuals within their respective settlements, and pathogen concentration in their accessible environment. Two different network connectivity layers are assumed to link human settlements: hydrologic pathways serve as ecological corridors for pathogens, while human mobility acts as disease vehicle through susceptibles contracting the disease and asymptomatic infectives shedding bacteria at their temporary destinations. We show that an epidemic outbreak can be triggered if the dominant eigenvalue of a generalized reproduction matrix G0, suitably accounting for spatial distribution of human settlements, hydrological pathways for pathogen dispersal and pathogen redistribution mechanisms due to human mobility, is larger than unity. Matrix G0 and its dominant eigenvalue thus replace the usual reproduction number whenever spatial effects on disease propagation cannot be ignored. Conversely, our novel criterion decays into the standard onset condition based on local reproduction numbers in nonspatial settings. By analyzing realistic test cases we show that within a connected network system the disease can start even if all the local reproduction numbers are smaller than unity, or might not start even if all the local reproduction numbers are larger than unity. We also show that onset geography in complex environments is linked to the dominant eigenvector of matrix G0. Applications to cholera outbreaks in developing countries demonstrate that our approach can be successfully used for disease prediction and emergency management.
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Trace-fossil assemblages with a new ichnogenus in "spotted"
NASA Astrophysics Data System (ADS)
Šimo, Vladimír; Tomašových, Adam
2013-10-01
Highly-bioturbated "spotted" limestones and marls (Fleckenmergel-Fleckenkalk facies) of the Early Jurassic, which were deposited in broad and recurrent deep-shelf habitats of the Northern Tethys, are characterized by rare benthic carbonate-producing macroinvertebrates. To address this paradox, we analyse trace-fossil assemblages in a ~85 m-thick succession of Pliensbachian spotted deposits (Zliechov Basin, Western Carpathians). They are dominated by infaunal and semi-infaunal deposit-feeders, with 9 ichnogenera and pyritized tubes of the semi-infaunal foraminifer Bathysiphon, being dominated by Chondrites, Lamellaeichnus (new ichnogenus), and Teichichnus. Lamellaeichnus, represented by a horizontal basal cylindrical burrow and an upper row of stacked convex-up gutters, was produced by a mobile deposit-feeder inhabiting shallow tiers because it is crossed by most other trace fossils. We show that the spotty appearance of the deposits is generated by a mixture of (1) dark, organic-rich shallow- and deep-tier traces (TOC = 0.16-0.36), and (2) light grey, organic-poor mottled or structurless sediment (TOC = 0.09-0.22). The higher TOC in shallow-tier burrows of Lamellaeichnus demonstrates that uppermost sediment layers were affected by poor redox cycling. Such conditions imply a limited mixed-layer depth and inefficient nutrient recycling conditioned by hypoxic bottom-waters, allowed by poor circulation and high sedimentation rates in depocenters of the Zliechov Basin. Hypoxic conditions are further supported by (1) dominance of trace-fossils produced by infaunal deposit feeders, (2) high abundance of hypoxiatolerant agglutinated foraminifer Bathysiphon, and (3) high abundance of Chondrites with ~0.5 mm-sized branches. Oxygen-deficient bottom-conditions can thus simultaneously explain the rarity of benthic carbonate-producing macroinvertebrates and high standing abundance of tolerant soft-shell and agglutinated organisms in spotted deposits.
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Subsurface water and clay mineral formation during the early history of Mars.
Ehlmann, Bethany L; Mustard, John F; Murchie, Scott L; Bibring, Jean-Pierre; Meunier, Alain; Fraeman, Abigail A; Langevin, Yves
2011-11-02
Clay minerals, recently discovered to be widespread in Mars's Noachian terrains, indicate long-duration interaction between water and rock over 3.7 billion years ago. Analysis of how they formed should indicate what environmental conditions prevailed on early Mars. If clays formed near the surface by weathering, as is common on Earth, their presence would indicate past surface conditions warmer and wetter than at present. However, available data instead indicate substantial Martian clay formation by hydrothermal groundwater circulation and a Noachian rock record dominated by evidence of subsurface waters. Cold, arid conditions with only transient surface water may have characterized Mars's surface for over 4 billion years, since the early-Noachian period, and the longest-duration aqueous, potentially habitable environments may have been in the subsurface.
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Microbial stratification and microbially catalyzed processes along a hypersaline chemocline
NASA Astrophysics Data System (ADS)
Hyde, A.; Joye, S. B.; Teske, A.
2017-12-01
Orca Basin is the largest deep hypersaline anoxic basin in the world, covering over 400 km2. Located at the bottom of the Gulf of Mexico, this body of water reaches depths of 200 meters and is 8 times denser (and more saline) than the overlying seawater. The sharp pycnocline prevents any significant vertical mixing and serves as a particle trap for sinking organic matter. These rapid changes in salinity, oxygen, organic matter, and other geochemical parameters present unique conditions for the microbial communities present. We collected samples in 10m intervals throughout the chemocline. After filtering the water, we used high-throughput bacterial and archaeal 16S rRNA gene sequencing to characterize the changing microbial community along the Orca Basin chemocline. The results reveal a dominance of microbial taxa whose biogeochemical function is entirely unknown. We then used metagenomic sequencing and reconstructed genomes for select samples, revealing the potential dominant metabolic processes in the Orca Basin chemocline. Understanding how these unique geochemical conditions shape microbial communities and metabolic capabilities will have implications for the ocean's biogeochemical cycles and the consequences of expanding oxygen minimum zones.
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NASA Astrophysics Data System (ADS)
Singh, J.; Sharma, R. K.; Sule, U. S.; Goutam, U. K.; Gupta, Jagannath; Gadkari, S. C.
2017-07-01
Magnesium phthalocyanine (MgPc) based Schottky diode on indium tin oxide (ITO) substrate was fabricated by thermal evaporation method. The dark current voltage characteristics of the prepared ITO-MgPc-Al heterojunction Schottky diode were measured at different temperatures. The diode showed the non-ideal rectification behavior under forward and reverse bias conditions with a rectification ratio (RR) of 56 at ±1 V at room temperature. Under forward bias, thermionic emission and space charge limited conduction (SCLC) were found to be the dominant conduction mechanisms at low (below 0.6 V) and high voltages (above 0.6 V) respectively. Under reverse bias conditions, Poole-Frenkel (field assisted thermal detrapping of carriers) was the dominant conduction mechanism. Three different approaches namely, I-V plots, Norde and Cheung methods were used to determine the diode parameters including ideality factor (n), barrier height (Φb), series resistance (R s) and were compared. SCLC mechanism showed that the trap concentration is 5.52 × 1022 m-3 and it lies at 0.46 eV above the valence band edge.
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Stress responses during aerobic exercise in relation to motivational dominance and state.
Thatcher, Joanne; Kuroda, Yusuke; Legrand, Fabien D; Thatcher, Rhys
2011-02-01
We examined the hypothesis that congruence between motivational dominance and state results in optimal psychological responses and performance during exercise. Twenty participants (10 telic dominant and 10 paratelic dominant) rated their stress at 5 min intervals as they cycled on an ergometer at gas exchange threshold for 30 min in both telic and paratelic state manipulated conditions. Participants then performed a test to exhaustion at a resistance equivalent to 110% of VO(2max). The hypothesized interaction between condition and dominance was significant for internal tension stress, as paratelic dominants were more stressed than telic dominants when exercising in the telic state and telic dominants were more stressed than paratelic dominants when exercising in the paratelic state. Similarly, the condition × dominance interaction for internal stress discrepancy was significant, as paratelic dominants reported greater internal stress discrepancy exercising in the telic compared with the paratelic state. Findings are discussed in relation to the application of reversal theory for understanding stress responses during aerobic exercise.
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Characteristics of depositional environments in the Nakdong River Estuary, South Korea
NASA Astrophysics Data System (ADS)
Woo, Han Jun; Lee, Jun-Ho; Kang, Jeongwon; Choi, Jae Ung
2017-04-01
Most of the major Korean estuaries, under high pressure from development, have dams with environmental problems, including restricted water circulation, low water quality, decreased biodiversity and wetland destruction. The Nakdong estuary on the southeastern coast of Korean Peninsula is an enclosed type with two large estuarine dams that were constructed in 1934 and between 1983 and 1987. The construction of dams has led to geomorphologic evolution of the barrier islands within Nakdong estuary. The estuary has been characterized as barrier-lagoon system with various subenvironments and microtidal with a 1.5 m tidal range. The sedimentary analyses and monitoring short-term sedimentation rates were investigated to understand characteristics of depositional environments in barrier-lagoon system of the Nakdong River Estuary. The surface sediments in the system were classified into three sedimentary facies in summer 2015. Generally, sand sediment was dominated in the seaward side of barrier islands and muddy sand sediment was dominated on the lagoon. Sandy mud and mud sediments were distributed in the tidal flat near Noksan industrial district and channels near dams. Fourteen a priori subenvironments were distinguished based on differences in landscape characterization (sediment texture, salinity, total organic carbon, pH and C/N ratios). The dendrogram resulting from cluster analysis of environmental variables from 14 a priori subenvironments could be clustered into 4 groups that were characterized by different sediment texture and hydrodynamic energy. The short-term sedimentation rates were obtained seasonally from three lines by burying a plate at sub-bottom depth from May 2015 to May 2016. The deposition was dominated on the tidal flat between mainland and Jinudo (JW- Line) and Sinjado (SJ-Line) with the net deposition rate of 10.09 mm/year and 12.38 mm/year, respectively. The erosion was dominated on the tidal flats at Eulsukdo (ES-Line) on the east side of the system with an annual erosion rate of -13.15 mm/year. Two 12.5-hours anchoring surveys at inlets were revealed that net suspended sediments were transported to the open sea during a tidal cycle in summer 2015 and 2016. The sedimentary processes of the anthropogenically altered barrier-lagoon system in Nakdong estuary showed that sediments transported into the lagoon through inlets during flood condition and moved to westward and deposited sediments on the tidal flat and channels near dams in low energy environments. In the east side of the system, sediments flowed out the sea with discharge from Nakdong Dam during ebb condition. These data will provide an important baseline for future assessments of environmental quality on dam open.
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Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility.
La Duc, Myron T; Nicholson, Wayne; Kern, Roger; Venkateswaran, Kasthuri
2003-10-01
Microbial characterization of the Mars Odyssey spacecraft and the Kennedy Space Center Spacecraft Assembly and Encapsulation Facility II (SAEF-II) was carried out by both culture-based and molecular methods. The most dominant cultivable microbes were species of Bacillus, with comamonads, microbacteria and actinomycetales also represented. Several spore-forming isolates were resistant to gamma-radiation, UV, H2O2 and desiccation, and one Acinetobacter radioresistens isolate and several Aureobasidium, isolated directly from the spacecraft, survived various conditions. Sequences arising in clone libraries were fairly consistent between the spacecraft and facility; predominant genera included Variovorax, Ralstonia and Aquaspirillum. This study improves our understanding of the microbial community structure, diversity and survival capabilities of microbes in an encapsulation facility and physically associated with colocated spacecraft.
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NASA Astrophysics Data System (ADS)
Luiggi, Ney José A.
1998-11-01
We have characterized a commercial 8011 (Al-Fe-Si) alloy by studying samples under different initial states of strain hardening and iron and silicon supersaturation using thermoelectric power as a measurement technique. Isothermal kinetics of precipitation are obtained in the temperature range between 225 °C and 600 °C. We determine the atom fraction precipitated for each microstructural condition, identifying the dominant alloying additions and evaluating the typical parameters of the precipitated phases, such as, for example, the apparent activation energy. Finally, we determine the time-temperature-transformation (TTT) diagrams. Our results prove that iron is the alloying addition that controls the precipitation kinetics of the 8011 alloy in the temperature range studied.
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Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility
NASA Technical Reports Server (NTRS)
La Duc, Myron T.; Nicholson, Wayne; Kern, Roger; Venkateswaran, Kasthuri
2003-01-01
Microbial characterization of the Mars Odyssey spacecraft and the Kennedy Space Center Spacecraft Assembly and Encapsulation Facility II (SAEF-II) was carried out by both culture-based and molecular methods. The most dominant cultivable microbes were species of Bacillus, with comamonads, microbacteria and actinomycetales also represented. Several spore-forming isolates were resistant to gamma-radiation, UV, H2O2 and desiccation, and one Acinetobacter radioresistens isolate and several Aureobasidium, isolated directly from the spacecraft, survived various conditions. Sequences arising in clone libraries were fairly consistent between the spacecraft and facility; predominant genera included Variovorax, Ralstonia and Aquaspirillum. This study improves our understanding of the microbial community structure, diversity and survival capabilities of microbes in an encapsulation facility and physically associated with colocated spacecraft.
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Variable climatic conditions dominate recent phytoplankton dynamics in Chesapeake Bay
NASA Astrophysics Data System (ADS)
Harding, Lawrence W., Jr.; Mallonee, Michael E.; Perry, Elgin S.; Miller, W. David; Adolf, Jason E.; Gallegos, Charles L.; Paerl, Hans W.
2016-03-01
Variable climatic conditions strongly influence phytoplankton dynamics in estuaries globally. Our study area is Chesapeake Bay, a highly productive ecosystem providing natural resources, transportation, and recreation for nearly 16 million people inhabiting a 165,000-km2 watershed. Since World War II, nutrient over-enrichment has led to multiple ecosystem impairments caused by increased phytoplankton biomass as chlorophyll-a (chl-a). Doubled nitrogen (N) loadings from 1945-1980 led to increased chl-a, reduced water clarity, and low dissolved oxygen (DO), while decreased N loadings from 1981-2012 suggest modest improvement. The recent 30+ years are characterized by high inter-annual variability of chl-a, coinciding with irregular dry and wet periods, complicating the detection of long-term trends. Here, we synthesize time-series data for historical and recent N loadings (TN, NO2 + NO3), chl-a, floral composition, and net primary productivity (NPP) to distinguish secular changes caused by nutrient over-enrichment from spatio-temporal variability imposed by climatic conditions. Wet years showed higher chl-a, higher diatom abundance, and increased NPP, while dry years showed lower chl-a, lower diatom abundance, and decreased NPP. Our findings support a conceptual model wherein variable climatic conditions dominate recent phytoplankton dynamics against a backdrop of nutrient over-enrichment, emphasizing the need to separate these effects to gauge progress toward improving water quality in estuaries.
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Variable climatic conditions dominate recent phytoplankton dynamics in Chesapeake Bay.
Harding, Lawrence W; Mallonee, Michael E; Perry, Elgin S; Miller, W David; Adolf, Jason E; Gallegos, Charles L; Paerl, Hans W
2016-03-30
Variable climatic conditions strongly influence phytoplankton dynamics in estuaries globally. Our study area is Chesapeake Bay, a highly productive ecosystem providing natural resources, transportation, and recreation for nearly 16 million people inhabiting a 165,000-km(2) watershed. Since World War II, nutrient over-enrichment has led to multiple ecosystem impairments caused by increased phytoplankton biomass as chlorophyll-a (chl-a). Doubled nitrogen (N) loadings from 1945-1980 led to increased chl-a, reduced water clarity, and low dissolved oxygen (DO), while decreased N loadings from 1981-2012 suggest modest improvement. The recent 30+ years are characterized by high inter-annual variability of chl-a, coinciding with irregular dry and wet periods, complicating the detection of long-term trends. Here, we synthesize time-series data for historical and recent N loadings (TN, NO2 + NO3), chl-a, floral composition, and net primary productivity (NPP) to distinguish secular changes caused by nutrient over-enrichment from spatio-temporal variability imposed by climatic conditions. Wet years showed higher chl-a, higher diatom abundance, and increased NPP, while dry years showed lower chl-a, lower diatom abundance, and decreased NPP. Our findings support a conceptual model wherein variable climatic conditions dominate recent phytoplankton dynamics against a backdrop of nutrient over-enrichment, emphasizing the need to separate these effects to gauge progress toward improving water quality in estuaries.
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Variable climatic conditions dominate recent phytoplankton dynamics in Chesapeake Bay
Harding, Jr., Lawrence W.; Mallonee, Michael E.; Perry, Elgin S.; Miller, W. David; Adolf, Jason E.; Gallegos, Charles L.; Paerl, Hans W.
2016-01-01
Variable climatic conditions strongly influence phytoplankton dynamics in estuaries globally. Our study area is Chesapeake Bay, a highly productive ecosystem providing natural resources, transportation, and recreation for nearly 16 million people inhabiting a 165,000-km2 watershed. Since World War II, nutrient over-enrichment has led to multiple ecosystem impairments caused by increased phytoplankton biomass as chlorophyll-a (chl-a). Doubled nitrogen (N) loadings from 1945–1980 led to increased chl-a, reduced water clarity, and low dissolved oxygen (DO), while decreased N loadings from 1981–2012 suggest modest improvement. The recent 30+ years are characterized by high inter-annual variability of chl-a, coinciding with irregular dry and wet periods, complicating the detection of long-term trends. Here, we synthesize time-series data for historical and recent N loadings (TN, NO2 + NO3), chl-a, floral composition, and net primary productivity (NPP) to distinguish secular changes caused by nutrient over-enrichment from spatio-temporal variability imposed by climatic conditions. Wet years showed higher chl-a, higher diatom abundance, and increased NPP, while dry years showed lower chl-a, lower diatom abundance, and decreased NPP. Our findings support a conceptual model wherein variable climatic conditions dominate recent phytoplankton dynamics against a backdrop of nutrient over-enrichment, emphasizing the need to separate these effects to gauge progress toward improving water quality in estuaries. PMID:27026279
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Nitrogen: A New Class of π-Bonding Partner in Hetero π-Stacking Interaction.
Ramanathan, N; Sankaran, K; Sundararajan, K
2017-11-30
Spectroscopy under isolated conditions at low temperatures is an excellent tool to characterize the aggregates stabilized through weak interactions. Within the framework of weak interactions, the π-stacking interactions are considered unconventional with the limited experimental proofs, wherein the bonding associates are either aromatic and heterocyclic compounds or their combinations. Besides aromatic compounds, π-stacking networks can even be realized with molecules possessing electron rich π-clouds. In this work, the N 2 molecule as a possible π-bonding partner is explored for the first time in which hetero π-stacking was achieved between pyrrole and N 2 precursors. The matrix isolation experiments performed by seeding pyrrole and N 2 mixtures in an Ar matrix at low temperatures with subsequent infrared spectral characterization revealed the generation of adducts stabilized through a π(pyrrole)···π(N 2 ) interaction. Under identical conditions with the likelihood of two competing π-stacking and hydrogen-bonding interactions in pyrrole-N 2 associates, π-stacking dominates energetically over hydrogen-bonding interaction.
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Invasive Congeners Differ in Successional Impacts across Space and Time
David, Aaron S.; Zarnetske, Phoebe L.; Hacker, Sally D.; Ruggiero, Peter; Biel, Reuben G.; Seabloom, Eric W.
2015-01-01
Invasive species can alter the succession of ecological communities because they are often adapted to the disturbed conditions that initiate succession. The extent to which this occurs may depend on how widely they are distributed across environmental gradients and how long they persist over the course of succession. We focus on plant communities of the USA Pacific Northwest coastal dunes, where disturbance is characterized by changes in sediment supply, and the plant community is dominated by two introduced grasses – the long-established Ammophila arenaria and the currently invading A. breviligulata. Previous studies showed that A. breviligulata has replaced A. arenaria and reduced community diversity. We hypothesize that this is largely due to A. breviligulata occupying a wider distribution across spatial environmental gradients and persisting in later-successional habitat than A. arenaria. We used multi-decadal chronosequences and a resurvey study spanning 2 decades to characterize distributions of both species across space and time, and investigated how these distributions were associated with changes in the plant community. The invading A. breviligulata persisted longer and occupied a wider spatial distribution across the dune, and this corresponded with a reduction in plant species richness and native cover. Furthermore, backdunes previously dominated by A. arenaria switched to being dominated by A. breviligulata, forest, or developed land over a 23-yr period. Ammophila breviligulata likely invades by displacing A. arenaria, and reduces plant diversity by maintaining its dominance into later successional backdunes. Our results suggest distinct roles in succession, with A. arenaria playing a more classically facilitative role and A. breviligulata a more inhibitory role. Differential abilities of closely-related invasive species to persist through time and occupy heterogeneous environments allows for distinct impacts on communities during succession. PMID:25658824
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Iasur-Kruh, Lilach; Taha-Salaime, Leena; Robinson, Wyatt E; Sharon, Rakefet; Droby, Samir; Perlman, Steve J; Zchori-Fein, Einat
2015-01-01
Sap-feeding insects harbor diverse microbial endosymbionts that play important roles in host ecology and evolution, including contributing to host pest status. The vine mealybug, Planococcus ficus, is a serious pest of grapevines, vectoring a number of pathogenic grape viruses. Previous studies have shown that virus transmission is abolished when mealybugs are raised in the laboratory on potato. To examine the possible role of microbial symbionts in virus transmission, the archaeal, bacterial, and fungal microbiota of field and laboratory P. ficus were characterized using molecular and classical microbiological methods. Lab and field colonies of P. ficus harbored different microbiota. While both were dominated by the bacterial obligate nutritional symbionts Moranella and Tremblaya, field samples also harbored a third bacterium that was allied with cluster L, a lineage of bacterial symbionts previously identified in aphids. Archaea were not found in any of the samples. Fungal communities in field-collected mealybugs were dominated by Metschnikowia and Cladosporium species, while those from laboratory-reared mealybugs were dominated by Alternaria and Cladosporium species. In conclusion, this study has identified a diverse set of microbes, most of which appear to be facultatively associated with P. ficus, depending on environmental conditions. The role of various members of the mealybug microbiome, as well as how the host plant affects microbial community structure, remains to be determined.
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NASA Astrophysics Data System (ADS)
Thomas, Manu Anna; Devasthale, Abhay
2017-10-01
Characterizing typical meteorological conditions associated with extreme pollution events helps to better understand the role of local meteorology in governing the transport and distribution of pollutants in the atmosphere. The knowledge of their co-variability could further help to evaluate and constrain chemistry transport models. Hence, in this study, we investigate the statistical linkages between extreme nitrogen dioxide (NO2) pollution events and meteorology over Scandinavia using observational and reanalysis data. It is observed that the south-westerly winds dominated during extreme events, accounting for 50-65 % of the total events depending on the season, while the second largest annual occurrence was from south-easterly winds, accounting for 17 % of total events. The specific humidity anomalies showed an influx of warmer and moisture-laden air masses over Scandinavia in the free troposphere. Two distinct modes in the persistency of circulation patterns are observed. The first mode lasts for 1-2 days, dominated by south-easterly winds that prevailed during 78 % of total extreme events in that mode, while the second mode lasted for 3-5 days, dominated by south-westerly winds that prevailed during 86 % of the events. The combined analysis of circulation patterns, their persistency, and associated changes in humidity and clouds suggests that NO2 extreme events over Scandinavia occur mainly due to long-range transport from the southern latitudes.
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Perthes disease: A new finding in Floating-Harbor syndrome.
Milani, Donatella; Scuvera, Giulietta; Gatti, Marta; Tolva, Gianluca; Bonarrigo, Francesca; Esposito, Susanna; Gervasini, Cristina
2018-03-01
Floating-Harbor Syndrome (FHS; OMIM #136140) is an ultra-rare autosomal dominant genetic condition characterized by expressive language delay, short stature with delayed bone mineralization, a triangular face with a prominent nose, and deep-set eyes, and hand anomalies. First reported in 1973, FHS is associated with mutations in the SRCAP gene, which encodes SNF2-related CREBBP activator protein. Mutations in the CREBBP gene cause Rubinstein-Taybi Syndrome (RSTS; OMIM #180849, #613684), another rare disease characterized by broad thumbs and halluces, facial dysmorphisms, short stature, and intellectual disability, which has a phenotypic overlap with FHS. We describe a case of FHS associated with a novel SRCAP mutation and characterized by Perthes disease, a skeletal anomaly described in approximately 3% of patients with RSTS. Thus Perthes disease can be added to the list of clinical features that overlap between FHS and RSTS. © 2018 Wiley Periodicals, Inc.
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Twenty years of changes in spatial association and community structure among desert perennials.
Miriti, Maria N
2007-05-01
I present results from analyses of 20 years of spatiotemporal dynamics in a desert perennial community. Plants were identified and mapped in a 1-ha permanent plot in Joshua Tree National Park (California, USA) in 1984. Plant size, mortality, and new seedlings were censused every five years through 2004. Two species, Ambrosia dumosa and Tetracoccus hallii, were dominant based on their relative abundance and ubiquitous distributions. Spatial analysis for distance indices (SADIE) identified regions of significantly high (patches) or low (gaps) densities. I used SADIE to test for (1) transience in the distribution of patches and gaps within species over time and (2) changes in juvenile-adult associations with conspecific adults and adults of the two dominant species over time. Plant performance was quantified in patches and gaps to determine plant responsiveness to local spatial associations. Species identity was found to influence associations between juveniles and adults. Juveniles of all species showed significant positive spatial associations with the dominant A. dumosa but not with T. hallii. The broad distribution of A. dumosa may increase the spatial extent of non-dominant species that are facilitated by this dominant. The spatial location of patches and gaps was generally consistent over time for adults but not juveniles. Observed variability in the locations of juvenile patches and gaps suggested that suitable locations for establishment were broad relative to occupied regions of the habitat, and that conditions for seed germination were independent of conditions for seedling survival. A dramatic change in spatial distributions and associations within and between species occurred after a major drought that influenced data from the final census. Positive associations between juveniles and adults of all species were found independent of previous associations and most species distributions contracted to areas that were previously characterized by low density. By linking performance to spatial distribution, results from this study offer a spatial context for plant-plant interactions within and among species. Community composition could be influenced both by individual species tolerances of abiotic conditions and by the competitive or facilitative interactions individuals exert over neighbors.
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Impact of oil on bacterial community structure in bioturbated sediments.
Stauffert, Magalie; Cravo-Laureau, Cristiana; Jézéquel, Ronan; Barantal, Sandra; Cuny, Philippe; Gilbert, Franck; Cagnon, Christine; Militon, Cécile; Amouroux, David; Mahdaoui, Fatima; Bouyssiere, Brice; Stora, Georges; Merlin, François-Xavier; Duran, Robert
2013-01-01
Oil spills threaten coastlines where biological processes supply essential ecosystem services. Therefore, it is crucial to understand how oil influences the microbial communities in sediments that play key roles in ecosystem functioning. Ecosystems such as sediments are characterized by intensive bioturbation due to burrowing macrofauna that may modify the microbial metabolisms. It is thus essential to consider the bioturbation when determining the impact of oil on microbial communities. In this study, an experimental laboratory device maintaining pristine collected mudflat sediments in microcosms closer to true environmental conditions--with tidal cycles and natural seawater--was used to simulate an oil spill under bioturbation conditions. Different conditions were applied to the microcosms including an addition of: standardized oil (Blend Arabian Light crude oil, 25.6 mg.g⁻¹ wet sediment), the common burrowing organism Hediste (Nereis) diversicolor and both the oil and H. diversicolor. The addition of H. diversicolor and its associated bioturbation did not affect the removal of petroleum hydrocarbons. After 270 days, 60% of hydrocarbons had been removed in all microcosms irrespective of the H. diversicolor addition. However, 16S-rRNA gene and 16S-cDNA T-RFLP and RT-PCR-amplicon libraries analysis showed an effect of the condition on the bacterial community structure, composition, and dynamics, supported by PerMANOVA analysis. The 16S-cDNA libraries from microcosms where H. diversicolor was added (oiled and un-oiled) showed a marked dominance of sequences related to Gammaproteobacteria. However, in the oiled-library sequences associated to Deltaproteobacteria and Bacteroidetes were also highly represented. The 16S-cDNA libraries from oiled-microcosms (with and without H. diversicolor addition) revealed two distinct microbial communities characterized by different phylotypes associated to known hydrocarbonoclastic bacteria and dominated by Gammaproteobacteria and Deltaproteobacteria. In the oiled-microcosms, the addition of H. diversicolor reduced the phylotype-richness, sequences associated to Actinobacteria, Firmicutes and Plantomycetes were not detected. These observations highlight the influence of the bioturbation on the bacterial community structure without affecting the biodegradation capacities.
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Broissin-Vargas, L M; Snell-Castro, R; Godon, J J; González-Ríos, O; Suárez-Quiroz, M L
2018-02-01
The purpose of this study was to evaluate the effect of warehouse storage conditions on the composition of the fungal community of green coffee beans (GCB) that were stored in jute sacks for 1 year. Molecular characterization of the fungal community composition and population dynamics obtained by Q-PCR, CE-SSCP (Simpson's diversity index D) and Illumina MiSeq sequencing indicated that Saccharomycetales dominated during the first 6 months of storage period with species as Meyerozyma guilliermondii and Pichia kluyveri. However, after 6 months of storage, the filamentous genus Wallemia became dominant. Principal components analysis correlated this fungal dynamic with storage conditions and other variables as chromaticity (colour), water activity, moisture content, reducing sugars concentration, fungal infection and ochratoxin A production. This study demonstrated that GCB stored in jute sacks after 6 months of storage lead to fungal population dynamics, decreased chromaticity in GCB by bleaching and, then, affected overall quality. Storage plays an important role in the quality evolution during the handling of the GCB. In this context, the composition of the microbial community could be considered a marker to assess the trade value of the coffee beans. © 2017 The Society for Applied Microbiology.
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Whole metagenome profiles of particulates collected from the International Space Station
Be, Nicholas A.; Avila-Herrera, Aram; Allen, Jonathan E.; ...
2017-07-17
Background The built environment of the International Space Station (ISS) is a highly specialized space in terms of both physical characteristics and habitation requirements. It is unique with respect to conditions of microgravity, exposure to space radiation, and increased carbon dioxide concentrations. Additionally, astronauts inhabit a large proportion of this environment. The microbial composition of ISS particulates has been reported; however, its functional genomics, which are pertinent due to potential impact of its constituents on human health and operational mission success, are not yet characterized. Methods This study examined the whole metagenome of ISS microbes at both species- and gene-levelmore » resolution. Air filter and dust samples from the ISS were analyzed and compared to samples collected in a terrestrial cleanroom environment. Furthermore, metagenome mining was carried out to characterize dominant, virulent, and novel microorganisms. The whole genome sequences of select cultivable strains isolated from these samples were extracted from the metagenome and compared. Results Species-level composition in the ISS was found to be largely dominated by Corynebacterium ihumii GD7, with overall microbial diversity being lower in the ISS relative to the cleanroom samples. When examining detection of microbial genes relevant to human health such as antimicrobial resistance and virulence genes, it was found that a larger number of relevant gene categories were observed in the ISS relative to the cleanroom. Strain-level cross-sample comparisons were made for Corynebacterium, Bacillus, and Aspergillus showing possible distinctions in the dominant strain between samples. Conclusion Species-level analyses demonstrated distinct differences between the ISS and cleanroom samples, indicating that the cleanroom population is not necessarily reflective of space habitation environments. Lastly, the overall population of viable microorganisms and the functional diversity inherent to this unique closed environment are of critical interest with respect to future space habitation. Observations and studies such as these will be important to evaluating the conditions required for long-term health of human occupants in such environments.« less
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Last century seabed morphodynamics of the Magra River estuary (Western Mediterranean Sea)
NASA Astrophysics Data System (ADS)
Pratellesi, Marta; Ivaldi, Roberta; Ciavola, Paolo; Sinapi, Luigi
2016-04-01
The estimation of morphological and volumetric changes of the delta system at the mouth of the Magra River is presented in this paper using bathymetric and sedimentological data. The data series were collected during several hydro-oceanographic surveys carried out from 1882 to 2014, processed following the hydrographic international standards and stored in the Italian Navy Hydrographic Institute database. In particular, bathymetric data characterized by the same standard and accuracy were collected using different devices such as sounding lines, single-beam and multi-beam acoustic system. This research compares Digital Terrain Models (DTMs), derived from highly accurate bathymetric data and covering different time scales (secular, half-century and decade) in order to assess and quantify the seabed morphodynamics in relation with the river sedimentary budget. The methodology and data exploitation consist mainly in the production of DTMs to study the elevation change, two-dimensional and three dimensional maps, cross-sections of the seabed, difference surfaces and computation of net volumes as well as an historical sedimentological map. These products are also an useful contribution to the aim of EU RISC-KIT Project. The results of the analysis highlight changes in the geometry of the Magra River mouth, of the coastal profile and bottom features primarily due to variations of the sedimentary budget and secondarily to wave dynamics. This behaviour is characterized by evident river mouth and coastal retreat, beach erosion and sediment bars decay and net accretion under periods of high river sediment discharge and elongate bar formation during relatively fair conditions. In the last century the main change is constituted by the disappearance of the typical constructive seabed delta morphology and the transformation into the current small estuary, with microtidal condition. This small estuary has an upper sector where river processes, sediments and bedforms dominate, a lower sector near the mouth, where wave and tidal processes and marine sediments dominate, and a middle sector, where tidal currents dominate and both river and marine sediments are present.
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Whole metagenome profiles of particulates collected from the International Space Station
DOE Office of Scientific and Technical Information (OSTI.GOV)
Be, Nicholas A.; Avila-Herrera, Aram; Allen, Jonathan E.
Background The built environment of the International Space Station (ISS) is a highly specialized space in terms of both physical characteristics and habitation requirements. It is unique with respect to conditions of microgravity, exposure to space radiation, and increased carbon dioxide concentrations. Additionally, astronauts inhabit a large proportion of this environment. The microbial composition of ISS particulates has been reported; however, its functional genomics, which are pertinent due to potential impact of its constituents on human health and operational mission success, are not yet characterized. Methods This study examined the whole metagenome of ISS microbes at both species- and gene-levelmore » resolution. Air filter and dust samples from the ISS were analyzed and compared to samples collected in a terrestrial cleanroom environment. Furthermore, metagenome mining was carried out to characterize dominant, virulent, and novel microorganisms. The whole genome sequences of select cultivable strains isolated from these samples were extracted from the metagenome and compared. Results Species-level composition in the ISS was found to be largely dominated by Corynebacterium ihumii GD7, with overall microbial diversity being lower in the ISS relative to the cleanroom samples. When examining detection of microbial genes relevant to human health such as antimicrobial resistance and virulence genes, it was found that a larger number of relevant gene categories were observed in the ISS relative to the cleanroom. Strain-level cross-sample comparisons were made for Corynebacterium, Bacillus, and Aspergillus showing possible distinctions in the dominant strain between samples. Conclusion Species-level analyses demonstrated distinct differences between the ISS and cleanroom samples, indicating that the cleanroom population is not necessarily reflective of space habitation environments. Lastly, the overall population of viable microorganisms and the functional diversity inherent to this unique closed environment are of critical interest with respect to future space habitation. Observations and studies such as these will be important to evaluating the conditions required for long-term health of human occupants in such environments.« less
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Whole metagenome profiles of particulates collected from the International Space Station.
Be, Nicholas A; Avila-Herrera, Aram; Allen, Jonathan E; Singh, Nitin; Checinska Sielaff, Aleksandra; Jaing, Crystal; Venkateswaran, Kasthuri
2017-07-17
The built environment of the International Space Station (ISS) is a highly specialized space in terms of both physical characteristics and habitation requirements. It is unique with respect to conditions of microgravity, exposure to space radiation, and increased carbon dioxide concentrations. Additionally, astronauts inhabit a large proportion of this environment. The microbial composition of ISS particulates has been reported; however, its functional genomics, which are pertinent due to potential impact of its constituents on human health and operational mission success, are not yet characterized. This study examined the whole metagenome of ISS microbes at both species- and gene-level resolution. Air filter and dust samples from the ISS were analyzed and compared to samples collected in a terrestrial cleanroom environment. Furthermore, metagenome mining was carried out to characterize dominant, virulent, and novel microorganisms. The whole genome sequences of select cultivable strains isolated from these samples were extracted from the metagenome and compared. Species-level composition in the ISS was found to be largely dominated by Corynebacterium ihumii GD7, with overall microbial diversity being lower in the ISS relative to the cleanroom samples. When examining detection of microbial genes relevant to human health such as antimicrobial resistance and virulence genes, it was found that a larger number of relevant gene categories were observed in the ISS relative to the cleanroom. Strain-level cross-sample comparisons were made for Corynebacterium, Bacillus, and Aspergillus showing possible distinctions in the dominant strain between samples. Species-level analyses demonstrated distinct differences between the ISS and cleanroom samples, indicating that the cleanroom population is not necessarily reflective of space habitation environments. The overall population of viable microorganisms and the functional diversity inherent to this unique closed environment are of critical interest with respect to future space habitation. Observations and studies such as these will be important to evaluating the conditions required for long-term health of human occupants in such environments.
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Buck, Joshua R.; St. Clair, Samuel B.
2012-01-01
Development and change in forest communities are strongly influenced by plant-soil interactions. The primary objective of this paper was to identify how forest soil characteristics vary along gradients of forest community composition in aspen-conifer forests to better understand the relationship between forest vegetation characteristics and soil processes. The study was conducted on the Fishlake National Forest, Utah, USA. Soil measurements were collected in adjacent forest stands that were characterized as aspen dominated, mixed, conifer dominated or open meadow, which includes the range of vegetation conditions that exist in seral aspen forests. Soil chemistry, moisture content, respiration, and temperature were measured. There was a consistent trend in which aspen stands demonstrated higher mean soil nutrient concentrations than mixed and conifer dominated stands and meadows. Specifically, total N, NO3 and NH4 were nearly two-fold higher in soil underneath aspen dominated stands. Soil moisture was significantly higher in aspen stands and meadows in early summer but converged to similar levels as those found in mixed and conifer dominated stands in late summer. Soil respiration was significantly higher in aspen stands than conifer stands or meadows throughout the summer. These results suggest that changes in disturbance regimes or climate scenarios that favor conifer expansion or loss of aspen will decrease soil resource availability, which is likely to have important feedbacks on plant community development. PMID:23285012
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NASA Astrophysics Data System (ADS)
Feng, Xiaojuan; Simpson, André J.; Gregorich, Edward G.; Elberling, Bo; Hopkins, David W.; Sparrow, Ashley D.; Novis, Philip M.; Greenfield, Lawrence G.; Simpson, Myrna J.
2010-11-01
Despite its harsh environmental conditions, terrestrial Antarctica contains a relatively large microbial biomass. Natural abundance carbon and nitrogen stable isotope signatures of organic materials in the dry valleys indicate mixed provenance of the soil organic matter (SOM) with varying proportions of contributions from lichens, mosses, lake-derived algae and cyanobacteria. Here we employed two complementary analytical techniques, biomarker measurements by gas chromatography/mass spectrometry and solution-state 1H nuclear magnetic resonance spectroscopy, to provide further information at a molecular-level about the composition and possible source of SOM in the Garwood Valley, Antarctica. The predominance of branched alkanes and short-chain lipids in the solvent extracts indicates that the primary contribution to the SOM was microbial-derived. Chemical structures in the NaOH extracts from soils were also dominated by amide, peptides, and a CH 3-dominating aliphatic region that were characteristic of microbial signatures. Furthermore, the SOM in the Garwood Valley contained compounds that were different from those in the cyanobacteria-dominated mat from a nearby lake (including monoethyl alkanes and enriched side-chain protons). This observation suggests that easily degradable carbon sources from the nearby lake did not dominate the SOM, which is consistent with a fast turnover of the mat-derived organic matter found in the valley. This study highlights the important role of native soil microbes in the carbon transformation and biogeochemistry in terrestrial Antarctica.
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Acoustic Characterization of a Multi-Rotor Unmanned Aircraft
NASA Astrophysics Data System (ADS)
Feight, Jordan; Gaeta, Richard; Jacob, Jamey
2017-11-01
In this study, the noise produced by a small multi-rotor rotary wing aircraft, or drone, is measured and characterized. The aircraft is tested in different configurations and environments to investigate specific parameters and how they affect the acoustic signature of the system. The parameters include rotor RPM, the number of rotors, distance and angle of microphone array from the noise source, and the ambient environment. The testing environments include an anechoic chamber for an idealized setting and both indoor and outdoor settings to represent real world conditions. PIV measurements are conducted to link the downwash and vortical flow structures from the rotors with the noise generation. The significant factors that arise from this study are the operational state of the aircraft and the microphone location (or the directivity of the noise source). The directivity in the rotor plane was shown to be omni-directional, regardless of the varying parameters. The tonal noise dominates the low to mid frequencies while the broadband noise dominates the higher frequencies. The fundamental characteristics of the acoustic signature appear to be invariant to the number of rotors. Flight maneuvers of the aircraft also significantly impact the tonal content in the acoustic signature.
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Kim, Tae Gwan; Jeong, So-Yeon; Cho, Kyung-Suk
2014-03-10
Tobermolite was characterized as a bed material for methanotrophic biofiltration. A lab-scale biofilter packed with tobermolite was operated for different operation times under identical conditions. The three different runs showed similar acclimation patterns of methane oxidation, with methane removal efficiency increasing rapidly for the first few days and peaking within three weeks, after which the efficiency remained stable. The mean methane removal capacities ranged from 766gm(-3)d(-1) to 974gm(-3)d(-1) after acclimation. Pyrosequencing indicated that the methanotrophic proportion (methanotroph/bacteria) increased to 71-94% within three weeks. Type I methanotrophs Methylocaldum and Methylosarcina were dominant during the initial growth period, then Methylocaldum alone dominated the methanotrophic community. A community comparison showed that total bacterial and methanotrophic communities were temporally stable after the initial growth period. Quantitative PCR showed that methanotrophic density increased during the first 3-4 weeks, then remained stable over 120 days. Tobermolite can provide a special habitat for the selective growth of methanotrophs, resulting in rapid acclimation. Tobermolite also allows the microbial community and methanotrophic density to remain stable, resulting in stable methane biofiltration. Copyright © 2014 Elsevier B.V. All rights reserved.
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Keely, S P; Brinkman, N E; Zimmerman, B D; Wendell, D; Ekeren, K M; De Long, S K; Sharvelle, S; Garland, J L
2015-07-01
Development of efficacious grey water (GW) treatment systems would benefit from detailed knowledge of the bacterial composition of GW. Thus, the aim of this study was to characterize the bacterial composition from (i) various points throughout a GW recycling system that collects shower and sink handwash (SH) water into an equalization tank (ET) prior to treatment and (ii) laundry (LA) water effluent of a commercial-scale washer. Bacterial composition was analysed by high-throughput pyrosequencing of the 16S rRNA gene. LA was dominated by skin-associated bacteria, with Corynebacterium, Staphylococcus, Micrococcus, Propionibacterium and Lactobacillus collectively accounting for nearly 50% of the total sequences. SH contained a more evenly distributed community than LA, with some overlap (e.g. Propionibacterium), but also contained distinct genera common to wastewater infrastructure (e.g. Zoogloea). The ET contained many of these same wastewater infrastructure-associated bacteria, but was dominated by genera adapted for anaerobic conditions. The data indicate that a relatively consistent set of skin-associated genera are the dominant human-associated bacteria in GW, but infrastructure-associated bacteria from the GW collection system and ET used for transient storage will be the most common bacteria entering GW treatment and reuse systems. This study is the first to use high-throughput sequencing to identify the bacterial composition of various GW sources. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.
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NASA Astrophysics Data System (ADS)
Markovic, Slobodan; Sümegi, Pál; Stevens, Thomas; Obreht, Igor; Chu, Wei; Buggle, Björn; Zech, Michael; Zech, Roland; Hambach, Ulrich; Lehmkuhl, Frank; Zeeden, Christian; Gavrilov, Milivoj; Svircev, Zorica
2016-04-01
In this study we present a comparison of two independent paleo-environmental evidences: novel n-alkane biomarkers and traditional land snails assemblages, associated with widely used proxy records such as the low field magnetic susceptibility, grain size and various isotopic and geochemical indices. These paleo-environmental proxy records provide evidence for the continued predominance of the different grassland vegetation types during the entire Late Pleistocene. The results presented in this study highlight the spatial differences in the environmental conditions during the Late Pleistocene across the European loess belt. Contrary to other European loess provinces characterized by high diversity of the Late Pleistocene environments (ranging from tundra-like to deciduous forest habitats), our investigations indicate a continued dominance of grassland-dominated ecosystems in the southeastern Carpathian Basin. This uninterrupted presence of Late Pleistocene grassland zone in the southeastern part of the Carpathian Basin may have played an important role in the preservation of exceptional biodiversity of the Balkan region, as well as in the migration of anatomically modern humans into Europe.
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Zhang, You; Cheng, Long; Tolonen, Katri E; Yin, Hongbin; Gao, Junfeng; Zhang, Zhiming; Li, Kuanyi; Cai, Yongjiu
2018-06-15
Rapid agricultural development has induced severe environmental problems to freshwater ecosystems. In this study, we aimed to examine the structure and environmental determinants of macroinvertebrate assemblages in an agriculture dominated Lake Chaohu Basin, China. A cluster analysis of the macroinvertebrate communities identified four groups of sites that were characterized by significantly different macroinvertebrate species. These four groups of sites had concentric spatial distribution patterns that followed the variation in the environmental conditions from the less anthropogenically disturbed headwaters towards the more anthropogenically disturbed lower reaches of the rivers and the Lake Chaohu. Moreover, taxa richness decreased from the headwaters towards the Lake Chaohu. The increasing practice of agriculture has reduced the abundances and richness of pollution sensitive species while opposite effects on pollution tolerant species. The study identified substrate heterogeneity and nutrient concentrations as the key environmental factors regulating the changes in the macroinvertebrate communities. We propose that particular attentions should be paid to reduce the nutrient enrichment and habitat degradation in the Lake Chaohu Basin and similar agriculture dominated basins. Copyright © 2018 Elsevier B.V. All rights reserved.
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Modeling Transformation and Conjugation in Bacteria Populations
NASA Astrophysics Data System (ADS)
Russo, John; Dong, J. J.
The rise of antibiotic resistance in bacteria populations is a growing threat to medical treatment of diseases. Transformation, where a cell absorbs a plasmid from its environment, and conjugation, direct transfer of a plasmid from one cell to another, are the two main mechanisms of emergence of antibiotic resistance. We model the processes using a combined approach of Kinetic Monte Carlo simulation and differential equations to describe the plasmid-carrying and plasmid-free populations. Through analysis of our results, we characterize the conditions that lead to dominance of the antibiotic resistant population. NSF-DMR #1248387.
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NASA Astrophysics Data System (ADS)
Jamroz, Ben; Julien, Keith; Knobloch, Edgar
2008-12-01
Taking advantage of disparate spatio-temporal scales relevant to astrophysics and laboratory experiments, we derive asymptotically exact reduced partial differential equation models for the magnetorotational instability. These models extend recent single-mode formulations leading to saturation in the presence of weak dissipation, and are characterized by a back-reaction on the imposed shear. Numerical simulations performed for a broad class of initial conditions indicate an initial phase of growth dominated by the optimal (fastest growing) magnetorotational instability fingering mode, followed by a vertical coarsening to a box-filling mode.
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Cross, Eben S; Sappok, Alexander G; Wong, Victor W; Kroll, Jesse H
2015-11-17
A detailed understanding of the climate and air quality impacts of mobile-source emissions requires the characterization of intermediate-volatility organic compounds (IVOCs), relatively-low-vapor-pressure gas-phase species that may generate secondary organic aerosol with high yields. Due to challenges associated with IVOC detection and quantification, IVOC emissions remain poorly understood at present. Here, we describe measurements of the magnitude and composition of IVOC emissions from a medium-duty diesel engine. Measurements are made on an engine dynamometer and utilize a new mass-spectrometric instrument to characterize the load dependence of the emissions in near-real-time. Results from steady-state engine operation indicate that IVOC emissions are highly dependent on engine power, with highest emissions at engine idle and low-load operation (≤25% maximum rated power) with a chemical composition dominated by saturated hydrocarbon species. Results suggest that unburned fuel components are the dominant IVOCs emitted at low loads. As engine load increases, IVOC emissions decline rapidly and become increasingly characterized by unsaturated hydrocarbons and oxygenated organics, newly formed from incomplete combustion processes at elevated engine temperatures and pressures. Engine transients, including a cold-start ignition and engine acceleration, show IVOC emission profiles that are different in amount or composition compared to steady-state combustion, underscoring the utility of characterizing IVOC emissions with high time resolution across realistic engine operating conditions. We find possible evidence for IVOC losses on unheated dilution and sampling surfaces, which need to be carefully accounted for in IVOC emission studies.
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Optical Characterization of an Eddy-induced Diatom Bloom West of the Island of Hawaii
NASA Astrophysics Data System (ADS)
Nencioli, F.; Chang, G.; Twardowski, M.; Dickey, T. D.
2010-01-01
Optical properties were collected along a transect across cyclonic eddy Opal in the lee of Hawaii during the E-Flux III field experiment (10-27 March 2005). The eddy was characterized by an intense doming of isopycnal surfaces, and by an enhanced Deep Chlorophyll Maximum Layer (DCML) within its core. The phytoplankton bloom was diatom dominated, evidencing an eddy-induced shift in ecological community. Four distinct regions were identified throughout the water column at Opal's core: a surface mixed layer dominated by small phytoplankton; a layer dominated by "senescent" diatoms between the bottom of the upper mixed layer and the DCML; the DCML; and a deep layer characterized by decreasing phytoplankton activity. We focused on two parameters, the ratio of chlorophyll concentration to particulate beam attenuation coefficient, [chl]/cp, and the backscattering ratio (the particle backscattering to particle scattering ratio), b~bp, and tested their sensitivity to the changes in particle composition observed through the water column at the eddy center. Our results show that [chl]/cp is not a good indicator. Despite the shift in ecological community, the ratio remains controlled primarily by the variation in chlorophyll concentration per cell with depth (photoadaptation), so that its values increase throughout the DCML. Steeper increase of [chl]/cp below the DCML suggest that remineralization might be another important controlling factor. On the other hand, b~bp clearly indicates a shift from a small phytoplankton to a diatom dominated community. Below an upper layer characterized by constant values, the b~bp showed a rapid decrease to a broad minimum within the DCML. The higher values below the DCML are consistent with enhanced remineralization below the eddy-induced bloom. Both the "senescent" and the "healthy" diatom layers are characterized by similar optical properties, indicating some possible limitations in using optical measurements to fully characterize the composition of suspended material in the water column. The inverse relationship between b~bp, reported by others for Case II waters, is observed neither for the background conditions, nor in the presence of the eddy-induced diatom bloom. Between the two parameters, only the backscattering ratio showed the potential to be a successful indicator for changes in particle composition in Case I waters.
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Machining and grinding: High rate deformation in practice
DOE Office of Scientific and Technical Information (OSTI.GOV)
Follansbee, P.S.
1993-04-01
Machining and grinding are well-established material-working operations involving highly non-uniform deformation and failure processes. A typical machining operation is characterized by uncertain boundary conditions (e.g.,surface interactions), three-dimensional stress states, large strains, high strain rates, non-uniform temperatures, highly localized deformations, and failure by both nominally ductile and brittle mechanisms. While machining and grinding are thought to be dominated by empiricism, even a cursory inspection leads one to the conclusion that this results more from necessity arising out of the complicated and highly interdisciplinary nature of the processes than from the lack thereof. With these conditions in mind, the purpose of thismore » paper is to outline the current understanding of strain rate effects in metals.« less
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Machining and grinding: High rate deformation in practice
DOE Office of Scientific and Technical Information (OSTI.GOV)
Follansbee, P.S.
1993-01-01
Machining and grinding are well-established material-working operations involving highly non-uniform deformation and failure processes. A typical machining operation is characterized by uncertain boundary conditions (e.g.,surface interactions), three-dimensional stress states, large strains, high strain rates, non-uniform temperatures, highly localized deformations, and failure by both nominally ductile and brittle mechanisms. While machining and grinding are thought to be dominated by empiricism, even a cursory inspection leads one to the conclusion that this results more from necessity arising out of the complicated and highly interdisciplinary nature of the processes than from the lack thereof. With these conditions in mind, the purpose of thismore » paper is to outline the current understanding of strain rate effects in metals.« less
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Computation of term dominance in text documents
Bauer, Travis L [Albuquerque, NM; Benz, Zachary O [Albuquerque, NM; Verzi, Stephen J [Albuquerque, NM
2012-04-24
An improved entropy-based term dominance metric useful for characterizing a corpus of text documents, and is useful for comparing the term dominance metrics of a first corpus of documents to a second corpus having a different number of documents.
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Understanding the major transitions in Quaternary climate dynamics
NASA Astrophysics Data System (ADS)
Willeit, Matteo; Ganopolski, Andrey
2017-04-01
Climate dynamics over the past 3 million years was characterized by strong variability associated with glacial cycles and several distinct regime changes. The Pliocene-Pleistocene Transition (PPT), which happened around 2.7 million years ago, was characterized by the appearance of the large continental ice sheets over Northern Eurasia and North America. For two million years after the PPT climate variability was dominated by relatively symmetric 40 kyr cycles. At around 1 million years ago the dominant mode of climate variability experienced a relatively rapid transition from 40 kyr to strongly asymmetric 100 kyr cycles of larger amplitude (Mid-Pleistocene Transition). Additionally, during the past 800 kyr there are clear differences between the earlier and the later glacial cycles with the last five cycles characterized by larger magnitude of variability (Mid-Brunhes Event). Here, we use the Earth system model of intermediate complexity CLIMBER-2 to explore possible mechanisms that could explain these regime shifts. CLIMBER-2 incorporates all major components of the Earth system - atmosphere, ocean, land surface, northern hemisphere ice sheets, terrestrial biota and soil carbon, marine biogeochemistry and aeolian dust. The model was optimally tuned to reproduce climate, ice volume and CO2 variability over the last 400,000 years. Using the same model version, we performed a large set of simulations covering the entire Quaternary (3 million years) starting from identical initial conditions and using a parallelization in time technique which consists of starting the model at different times (every 100,000 years) and running each simulation for 500,000 years. The Earth's orbital variations are the only prescribed radiative forcing. Several sets of the Northern Hemisphere orography and sediment thickness representing different stages of landscape evolution during the Quaternary are prescribed as boundary conditions for the ice sheet model and volcanic CO2 outgassing is used as the external forcing for the carbon cycle to allow for different background atmospheric CO2 concentrations. We show that by varying only these two model boundary conditions and volcanic forcing the model is able to reproduce the major regime changes of Quaternary long-term climate dynamics.
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Weinberg's syndrome: a disorder of attention and behavior problems needing further research.
Brumback, R A
2000-07-01
A subset of inattentive children have an underlying problem in sustaining wakefulness ("vigilance"). This disorder of vigilance, termed Weinberg's syndrome, is characterized by difficulty in maintaining wakefulness and alertness as evidenced by (among other symptoms) motor restlessness (fidgeting and moving about, yawning and stretching, talkativeness) and complaints of tiredness. During tasks requiring concentration (continuous mental activity) such as reading, children with Weinberg's syndrome will daydream, lose interest, complain of boredom, and become increasingly restless. Napping, while infrequent, usually is not refreshing. A distinct personality described by family members and friends as kind, affectionate, compassionate, or "angelic" also seems to characterize this condition. Weinberg's syndrome has a familial pattern suggesting autosomal-dominant inheritance. Additional neurophysiologic, pharmacotherapeutic, epidemiologic, and genetic studies will be necessary for a full understanding of Weinberg's syndrome.
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Ecological resilience indicators for mangrove ecosystems
Day, Richard H.; Allen, Scott T.; Brenner, Jorge; Goodin, Kathleen; Faber-Langendoen, Don; Ames, Katherine Wirt
2018-01-01
Mangrove ecosystems are coastal wetland ecosystems dominated by mangrove species that are typically found in the intertidal zone, characterized by frequently flooded saline soil conditions. The majority of the approximately 500,000 acres of mangrove ecosystem in the United States occurs in the NGoM, and almost all of that is in Florida, with over 90 percent in the four southern counties of Lee, Collier, Miami-Dade, and Monroe. Scattered stands and individuals occur north and westward into Louisiana and Texas (Osland et al., 2016). The three common mangrove species are: black mangrove (Avicennia germinans), white mangrove (Laguncularia racemosa), and red mangrove (Rhizophora mangle). The mangrove system described in this project includes Tidal Mangrove Shrubland and Tidal Mangrove Forest as classified in CMECS (FGDC, 2012). It is classified as Caribbean Fringe Mangrove (G004) in the USNVC (2016), with a variety of distinct associations, based on species dominance and ecological setting.
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A hydrogen-based subsurface microbial community dominated by methanogens
Chapelle, F.H.; O'Neil, Kyle; Bradley, P.M.; Methe, B.A.; Ciufo, S.A.; Knobel, L.L.; Lovley, D.R.
2002-01-01
The search for extraterrestrial life may be facilitated if ecosystems can be found on Earth that exist under conditions analogous to those present on other planets or moons. It has been proposed, on the basis of geochemical and thermodynamic considerations, that geologically derived hydrogen might support subsurface microbial communities on Mars and Europa in which methanogens form the base of the ecosystem1-5. Here we describe a unique subsurface microbial community in which hydrogen-consuming, methane-producing Archaea far outnumber the Bacteria. More than 90% of the 16s ribosomal DNA sequences recovered from hydrothermal waters circulating through deeply buried igneous rocks in Idaho are related to hydrogen-using methanogenic microorganisms. Geochemical characterization indicates that geothermal hydrogen, not organic carbon, is the primary energy source for this methanogen-dominated microbial community. These results demonstrate that hydrogen-based methanogenic communities do occur in Earth's subsurface, providing an analogue for possible subsurface microbial ecosystems on other planets.
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NASA Astrophysics Data System (ADS)
Winnick, M.; Carroll, R. W. H.; Williams, K. H.; Maxwell, R. M.; Maher, K.
2016-12-01
Although important for solute production and transport, the varied interactions between biogeochemical processes and subsurface hydrology remain poorly characterized. We investigate these couplings in the headwaters of the East River, CO, a high-elevation shale-dominated catchment system in the Rocky Mountains, using concentration-discharge (C-Q) relationships for major cations, anions, and organic carbon. Dissolved organic carbon (DOC) displays a positive C-Q relationship with well-defined clockwise hysteresis, indicating the mobilization and depletion of DOC in the upper soil horizons and highlighting the importance of shallow flowpaths through the snowmelt period. Cation and anion concentrations demonstrate that carbonate weathering, which dominates solute fluxes, is promoted by both carbonic acid and sulfuric acid derived from oxidation of pyrite in the shale bedrock. Sulfuric acid weathering in the deep subsurface dominates during base flow conditions when waters have infiltrated below the hypothesized pyrite oxidation front, whereas carbonic acid weathering plays a dominant role during the snowmelt period as a result of shallow flowpaths. Differential C-Q relationships between solutes suggest that infiltrating waters approach calcite saturation before reaching the pyrite oxidation front, after which sulfuric acid reduces carbonate alkalinity. This increase in CO2(aq) at the expense of HCO3- results in outgassing of CO2 when waters equilibrate to surface conditions, and reduces the export of carbon and alkalinity from the East River by roughly 33% annually. Future changes in snowmelt dynamics that control the balance of carbonic and sulfuric acid weathering therefore have the capacity to substantially alter the cycling of carbon in the East River catchment. Ultimately, we demonstrate that differential C-Q relationships between major solutes can provide unique insights into the complex subsurface flow and biogeochemical dynamics that operate at catchment scales.
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NASA Astrophysics Data System (ADS)
Rajaneesh, K. M.; Mitbavkar, Smita; Anil, Arga Chandrashekar
2018-07-01
Phytoplankton size-fractionated biomass is an important determinant of the type of food web functioning in aquatic ecosystems. Knowledge about the effect of seasonal salinity gradient on the size-fractionated biomass dynamics is still lacking, especially in tropical estuaries experiencing monsoon. The phytoplankton size-fractionated chlorophyll a biomass (>3 μm and <3 μm) and picophytoplankton community structure were characterized in the monsoonal Zuari estuary, along the west coast of India, from October 2010 to September 2011 across the salinity gradient (0-35). On an annual scale, >3 μm size-fraction was the major contributor to the total phytoplankton chlorophyll a biomass with the ephemeral dominance of <3 μm size-fraction. During monsoon season, freshwater runoff and shorter water residence time resulted in a size-independent response. The lowest annual chlorophyll a biomass concentration of both size-fractions showed signs of recovery with increasing salinity downstream towards the end of the monsoon season. In contrast, the chlorophyll a biomass response was size-dependent during the non-monsoon seasons with the sporadic dominance (>50%) of <3 μm chlorophyll a biomass during high water temperature episodes from downstream to middle estuary during pre-monsoon and at low salinity and high nutrient conditions upstream during post-monsoon. These conditions also influenced the picophytoplankton community structure with picoeukaryotes dominating during the pre-monsoon, phycoerythrin containing Synechococcus during the monsoon and phycocyanin containing Synechococcus during the post-monsoon. This study highlights switching over of dominance in size-fractionated phytoplankton chlorophyll a biomass at intra, inter-seasonal and spatial scales which will likely govern the estuarine trophodynamics.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Winnick, Matthew J.; Carroll, Rosemary W. H.; Williams, Kenneth H.
Although important for riverine solute and nutrient fluxes, the connections between biogeochemical processes and subsurface hydrology remain poorly characterized. We investigate these couplings in the East River, CO, a high-elevation shale-dominated catchment in the Rocky Mountains, using concentration-discharge (C-Q) relationships for major cations, anions, and organic carbon. Dissolved organic carbon (DOC) displays a positive C-Q relationship with clockwise hysteresis, indicating mobilization and depletion of DOC in the upper soil horizons and emphasizing the importance of shallow flowpaths during snowmelt. Cation and anion concentrations demonstrate that carbonate weathering, which dominates solute fluxes, is promoted by both sulfuric acid derived from pyritemore » oxidation in the shale bedrock and carbonic acid derived from subsurface respiration. Sulfuric acid weathering dominates during baseflow conditions when waters infiltrate below the inferred pyrite oxidation front, whereas carbonic acid weathering plays a dominant role during snowmelt as a result of shallow flowpaths. Differential C-Q relationships between solutes suggest that infiltrating waters approach calcite saturation before reaching the pyrite oxidation front, after which sulfuric acid reduces carbonate alkalinity. This reduction in alkalinity results in CO 2 outgassing when waters equilibrate to surface conditions, and reduces the riverine export of carbon and alkalinity by roughly 33% annually. In conclusion, future changes in snowmelt dynamics that control the balance of carbonic and sulfuric acid weathering may substantially alter carbon cycling in the East River. Ultimately, we demonstrate that differential C-Q relationships between major solutes can provide unique insights into the complex subsurface flow and biogeochemical dynamics that operate at catchment scales.« less
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Motor Cortical Plasticity to Training Started in Childhood: The Example of Piano Players.
Chieffo, Raffaella; Straffi, Laura; Inuggi, Alberto; Gonzalez-Rosa, Javier J; Spagnolo, Francesca; Coppi, Elisabetta; Nuara, Arturo; Houdayer, Elise; Comi, Giancarlo; Leocani, Letizia
2016-01-01
Converging evidence suggest that motor training is associated with early and late changes of the cortical motor system. Transcranial magnetic stimulation (TMS) offers the possibility to study plastic rearrangements of the motor system in physiological and pathological conditions. We used TMS to characterize long-term changes in upper limb motor cortical representation and interhemispheric inhibition associated with bimanual skill training in pianists who started playing in an early age. Ipsilateral silent period (iSP) and cortical TMS mapping of hand muscles were obtained from 30 strictly right-handed subjects (16 pianists, 14 naïve controls), together with electromyographic recording of mirror movements (MMs) to voluntary hand movements. In controls, motor cortical representation of hand muscles was larger on the dominant (DH) than on the non-dominant hemisphere (NDH). On the contrary, pianists showed symmetric cortical output maps, being their DH less represented than in controls. In naïve subjects, the iSP was smaller on the right vs left abductor pollicis brevis (APB) indicating a weaker inhibition from the NDH to the DH. In pianists, interhemispheric inhibition was more symmetric as their DH was better inhibited than in controls. Electromyographic MMs were observed only in naïve subjects (7/14) and only to voluntary movement of the non-dominant hand. Subjects with MM had a lower iSP area on the right APB compared with all the others. Our findings suggest a more symmetrical motor cortex organization in pianists, both in terms of muscle cortical representation and interhemispheric inhibition. Although we cannot disentangle training-related from preexisting conditions, it is possible that long-term bimanual practice may reshape motor cortical representation and rebalance interhemispheric interactions, which in naïve right-handed subjects would both tend to favour the dominant hemisphere.
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Motor Cortical Plasticity to Training Started in Childhood: The Example of Piano Players
Inuggi, Alberto; Gonzalez-Rosa, Javier J.; Spagnolo, Francesca; Coppi, Elisabetta; Nuara, Arturo; Houdayer, Elise; Comi, Giancarlo; Leocani, Letizia
2016-01-01
Converging evidence suggest that motor training is associated with early and late changes of the cortical motor system. Transcranial magnetic stimulation (TMS) offers the possibility to study plastic rearrangements of the motor system in physiological and pathological conditions. We used TMS to characterize long-term changes in upper limb motor cortical representation and interhemispheric inhibition associated with bimanual skill training in pianists who started playing in an early age. Ipsilateral silent period (iSP) and cortical TMS mapping of hand muscles were obtained from 30 strictly right-handed subjects (16 pianists, 14 naïve controls), together with electromyographic recording of mirror movements (MMs) to voluntary hand movements. In controls, motor cortical representation of hand muscles was larger on the dominant (DH) than on the non-dominant hemisphere (NDH). On the contrary, pianists showed symmetric cortical output maps, being their DH less represented than in controls. In naïve subjects, the iSP was smaller on the right vs left abductor pollicis brevis (APB) indicating a weaker inhibition from the NDH to the DH. In pianists, interhemispheric inhibition was more symmetric as their DH was better inhibited than in controls. Electromyographic MMs were observed only in naïve subjects (7/14) and only to voluntary movement of the non-dominant hand. Subjects with MM had a lower iSP area on the right APB compared with all the others. Our findings suggest a more symmetrical motor cortex organization in pianists, both in terms of muscle cortical representation and interhemispheric inhibition. Although we cannot disentangle training-related from preexisting conditions, it is possible that long-term bimanual practice may reshape motor cortical representation and rebalance interhemispheric interactions, which in naïve right-handed subjects would both tend to favour the dominant hemisphere. PMID:27336584
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Winnick, Matthew J.; Carroll, Rosemary W. H.; Williams, Kenneth H.; ...
2017-03-01
Although important for riverine solute and nutrient fluxes, the connections between biogeochemical processes and subsurface hydrology remain poorly characterized. We investigate these couplings in the East River, CO, a high-elevation shale-dominated catchment in the Rocky Mountains, using concentration-discharge (C-Q) relationships for major cations, anions, and organic carbon. Dissolved organic carbon (DOC) displays a positive C-Q relationship with clockwise hysteresis, indicating mobilization and depletion of DOC in the upper soil horizons and emphasizing the importance of shallow flowpaths during snowmelt. Cation and anion concentrations demonstrate that carbonate weathering, which dominates solute fluxes, is promoted by both sulfuric acid derived from pyritemore » oxidation in the shale bedrock and carbonic acid derived from subsurface respiration. Sulfuric acid weathering dominates during baseflow conditions when waters infiltrate below the inferred pyrite oxidation front, whereas carbonic acid weathering plays a dominant role during snowmelt as a result of shallow flowpaths. Differential C-Q relationships between solutes suggest that infiltrating waters approach calcite saturation before reaching the pyrite oxidation front, after which sulfuric acid reduces carbonate alkalinity. This reduction in alkalinity results in CO 2 outgassing when waters equilibrate to surface conditions, and reduces the riverine export of carbon and alkalinity by roughly 33% annually. In conclusion, future changes in snowmelt dynamics that control the balance of carbonic and sulfuric acid weathering may substantially alter carbon cycling in the East River. Ultimately, we demonstrate that differential C-Q relationships between major solutes can provide unique insights into the complex subsurface flow and biogeochemical dynamics that operate at catchment scales.« less
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Characterization of spoilage markers in modified atmosphere packaged iceberg lettuce.
Ioannidis, Angelos-Gerasimos; Kerckhof, Frederiek-Maarten; Riahi Drif, Yasmine; Vanderroost, Mike; Boon, Nico; Ragaert, Peter; De Meulenaer, Bruno; Devlieghere, Frank
2018-04-22
Fresh cut iceberg lettuce spoilage was studied considering the microbial and biochemical activity, the formation of volatile organic compounds (VOC) and consumer acceptability. Lettuce was packaged under three different packaging conditions and stored at 4 °C for 10 days: anaerobic packaging (ANAER), equilibrium modified atmosphere packaging with 3% O 2 (EMAP) and perforated packages (AIR). Results indicated a clear distinction between packaging conditions. EMAP and AIR resulted in a short shelf life (≤5.6 days) which was limited due to browning, leading to consumer rejection as assessed via the Weibull hazard analysis method, while no off-odors were detected. Culture- independent 16 s rRNA gene amplicon sequencing revealed Pseudomonas spp. as the dominating species. In contrast, under ANAER conditions, lactic acid bacteria dominated with genera of Leuconostoc spp. and Lactococcus spp. proliferating, while also oligotypes of Pseudomonas spp. were found. Spoilage under ANAER occurred after 6.6 days and it was related to strong fermentative-like off-odors that were present by the end of storage. As revealed by selective ion flow tube mass spectrometry (SIFT-MS), these odors were associated with several VOCs such as: ethanol, 3-methyl-1-butanol, 2,3-butanediol, (Z)-3-hexen-1-ol, hexanal, acetic acid, ethyl acetate and dimethyl sulfide. Panelists rejected the iceberg lettuce due to the formation of off-odors while the overall appearance remained good throughout the study. Hence a sensor based technology incorporated in the packaging, detecting VOCs and in particular ethanol as dominant compound, could serve as a spoilage indicator for ANAER packed lettuce, which proved to have the longest shelf life. Copyright © 2018 Elsevier B.V. All rights reserved.
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NASA Astrophysics Data System (ADS)
Mallo, Miguel; Ziveri, Patrizia; Mortyn, P. Graham; Schiebel, Ralf; Grelaud, Michael
2017-05-01
Planktic foraminifera were collected with 150 µm BONGO nets from the upper 200 m water depth at 20 stations across the Mediterranean Sea between 2 May and 2 June 2013. The main aim is to characterize the species distribution and test the covariance between foraminiferal area density (ρA) and seawater carbonate chemistry in a biogeochemical gradient including ultraoligotrophic conditions. Average foraminifera abundances are 1.42 ± 1.43 ind. 10 m-3 (ranging from 0.11 to 5.20 ind. 10 m-3), including 12 morphospecies. Large differences in species assemblages and total abundances are observed between the different Mediterranean sub-basins, with an overall dominance of spinose, symbiont-bearing species indicating oligotrophic conditions. The highest values in absolute abundance are found in the Strait of Gibraltar and the Alboran Sea. The western basin is dominated by Globorotalia inflata and Globigerina bulloides at slightly lower standing stocks than in the eastern basin. In contrast, the planktic foraminiferal assemblage in the warmer, saltier, and more nutrient-limited eastern basin is dominated by Globigerinoides ruber (white). These new results, when combined with previous findings, suggest that temperature-induced surface water stratification and food availability are the main factors controlling foraminiferal distribution. In the oligotrophic and highly alkaline and supersaturated with respect to calcite and aragonite Mediterranean surface water, standing stocks and ρA of G. ruber (white) and G. bulloides are affected by both food availability and seawater carbonate chemistry. Rapid warming increased surface ocean stratification impacting food availability and changes in trophic conditions could be the causes of reduced foraminiferal abundance, diversity, and species-specific changes in planktic foraminiferal calcification.
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NASA Astrophysics Data System (ADS)
Ishtiaq, K. S.; Abdul-Aziz, O. I.
2015-12-01
We developed user-friendly empirical models to predict instantaneous fluxes of CO2 and CH4 from coastal wetlands based on a small set of dominant hydro-climatic and environmental drivers (e.g., photosynthetically active radiation, soil temperature, water depth, and soil salinity). The dominant predictor variables were systematically identified by applying a robust data-analytics framework on a wide range of possible environmental variables driving wetland greenhouse gas (GHG) fluxes. The method comprised of a multi-layered data-analytics framework, including Pearson correlation analysis, explanatory principal component and factor analyses, and partial least squares regression modeling. The identified dominant predictors were finally utilized to develop power-law based non-linear regression models to predict CO2 and CH4 fluxes under different climatic, land use (nitrogen gradient), tidal hydrology and salinity conditions. Four different tidal wetlands of Waquoit Bay, MA were considered as the case study sites to identify the dominant drivers and evaluate model performance. The study sites were dominated by native Spartina Alterniflora and characterized by frequent flooding and high saline conditions. The model estimated the potential net ecosystem carbon balance (NECB) both in gC/m2 and metric tonC/hectare by up-scaling the instantaneous predicted fluxes to the growing season and accounting for the lateral C flux exchanges between the wetlands and estuary. The entire model was presented in a single Excel spreadsheet as a user-friendly ecological engineering tool. The model can aid the development of appropriate GHG offset protocols for setting monitoring plans for tidal wetland restoration and maintenance projects. The model can also be used to estimate wetland GHG fluxes and potential carbon storage under various IPCC climate change and sea level rise scenarios; facilitating an appropriate management of carbon stocks in tidal wetlands and their incorporation into a potential carbon market.
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Phase of Target Scattering for Wetland Characterization using Polarimetric C-Band SAR
DOE Office of Scientific and Technical Information (OSTI.GOV)
Touzi, R; Deschamps, Mireille C; Rother, Gernot
2009-09-01
Wetlands continue to be under threat, and there is a major need for mapping and monitoring wetlands for better management and protection of these sensitive areas. Only a few studies have been published on wetland characterization using polarimetric synthetic aperture radars (SARs). The most successful results have been obtained using the phase difference between HH and VV polarizations, phi{sub HH} - phi{sub VV}, which has shown promise for separating flooded wetland classes. Recently, we have introduced a new decomposition, the Touzi decomposition, which describes target scattering type in terms of a complex entity, the symmetric scattering type. Huynen's target helicitymore » is used to assess the symmetric nature of target scattering. In this paper, the new complex-scattering-type parameters, the magnitude alphas and phase Phi{sub alpha} s, are investigated for wetland characterization. The use of the dominant-scattering-type phase Phi{sub alpha} s makes it possible to discriminate shrub bogs from poor (sedge or shrub) fens. These two classes cannot be separated using phi{sub HH} - phi{sub VV}, or the radiometric scattering information provided by alphas, the Cloude alpha, the entropy H, and the multipolarization HH-HV-VV channels. phi{sub alpha} s, which cannot detect deep (45 cm below the peat surface) water flow in a bog, is more sensitive to the shallower (10-20-cm) fen beneath water, and this makes possible the separation of poor fens from shrub bogs. Phi{sub alpha} s also permits the discrimination of conifer-dominated treed bog from upland deciduous forest under leafy conditions. Target helicity information is exploited to introduce a new parameter, the target asymmetry. The latter is shown very promising for detection of forest changes between leafy and no-leaf conditions. The analysis of low-entropy marsh scattering showed that both the scattering-type magnitude and phas- - e alphas and Phi{sub alpha} s, respectively, as well as the maximum polarization intensity of the dominant scattering m, are needed for a better understanding of marsh complex scattering mechanisms. The unique information provided by the new roll-invariant decomposition parameters are demonstrated using repeat-pass Convair-580 polarimetric C-band SAR data collected in June and October 1995 over the RAMSAR Mer Bleue wetland site near Ottawa (Canada).« less
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NASA Astrophysics Data System (ADS)
Zarate, P. F.; Israde-Alcantara, I.; Dorfler, W.; Unkel, I. B.; Dominguez Vazquez, G.; Nelle, O.; Espinoza Encinas, I. R.
2015-12-01
At Lake Chapala (103° 02'W, 20° 15'N) a linear sedimentation rate of 2 mm a-1 for the last 12,000 years was deduced from ten 14C dates. Due to the presence of very old hydrothermal bitumen (14C date: >40,000 years BP) a reservoir effect of c. 2000 years must be taken into account. Pollen results indicate a generally increase in dry forest taxa with an interruption during the middle Holocene. Diatom results allow a zonation into 6 paleoenvironmental phases. Zone 1: From 27 to 26m depth (c. 12,000 yBP), Stephanodiscus niagaraeis the dominant taxa in coincidence with high TOC percents; a transgression into moister conditions is indicated. Zone 2: From 26 to 17m (10,310-8720 cal BP) it is characterized by Aulacoseira granulata indicating an increase in ionic conditions and turbidity in lake as result of a decrease in lacustrine levels. Zone 3: From 17 to 13m (8720-5950 cal BP) it is dominated by C. aff. kuetzingiana and the presence of temperate pollen taxa at 12 m (ca. 5000 YBP) suggest an increase in humid conditions in this interval. Zone 4: From 13 to 8.5m (5950-2840 cal BP) encompass the middle Holocene. Stephanodiscus medius alternating with Surirella ovalis characterize this period and indicate very fluctuant conditions in coincidence with at a decrease of low TOC percents. Zone 5: From 8.5 to 4m (2840-1580 cal BP), mark the establishment of modern conditions until present, with a peak in S. ovalis in coincidence with the high A. granulata, indicating low lake, saline, turbid and more extreme conditions at the base and top of this interval. Zone 6: From 4 to 0m (1580 cal BP to Present) S. medius (over 50%), C. aff. dubius (20 to 40%), perifitic diatoms in low percents (<5%), and A. granulata and S.ovallis in spite of few percents, are observed in concordance with a return of saline conditions of the lake, indicate a regressive phase. Magnetic (susceptibility and paleomagnetism), microprobe analyses on tephra levels, X-ray Fluorescence (XRF) and Difraction (XRD) and anthracological studies are in progress.
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Room temperature photoluminescence properties of ZnO nanorods grown by hydrothermal reaction
DOE Office of Scientific and Technical Information (OSTI.GOV)
Iwan, S., E-mail: iwan-sugihartono@unj.ac.id; Prodi Ilmu Material, Departemen Fisika, FMIPA, Universitas Indonesia, Kampus UI Depok; Fauzia, Vivi
Zinc oxide (ZnO) nanorods were fabricated by a hydrothermal reaction on silicon (Si) substrate at 95 °C for 6 hours. The ZnO seed layer was fabricated by depositing ZnO thin films on Si substrates by ultrasonic spray pyrolisis (USP). The annealing effects on crystal structure and optical properties of ZnO nanorods were investigated. The post-annealing treatment was performed at 800 °C with different environments. The annealed of ZnO nanorods were characterized by X-ray diffraction (XRD) and photoluminescence (PL) in order to analyze crystal structure and optical properties, respectively. The results show the orientations of [002], [101], [102], and [103] diffractionmore » peaks were observed and hexagonal wurtzite structure of ZnO nanorods were vertically grown on Si substrates. The room temperature PL spectra show ultra-violet (UV) and visible emissions. The annealed of ZnO nanorods in vacuum condition (3.8 × 10{sup −3} Torr) has dominant UV emission. Meanwhile, non-annealed of ZnO nanorods has dominant visible emission. It was expected that the annealed of ZnO in vacuum condition suppresses the existence of native defects in ZnO nanorods.« less
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Colon-specific delivery of 5-aminosalicylic acid from chitosan-Ca-alginate microparticles.
Mladenovska, K; Raicki, R S; Janevik, E I; Ristoski, T; Pavlova, M J; Kavrakovski, Z; Dodov, M G; Goracinova, K
2007-09-05
Chitosan-Ca-alginate microparticles for colon-specific delivery and controlled release of 5-aminosalicylic acid after peroral administration were prepared using spray drying method followed by ionotropic gelation/polyelectrolyte complexation. Physicochemical characterization pointed to the negatively charged particles with spherical morphology having a mean diameter less than 9 microm. Chitosan was localized dominantly in the particle wall, while for alginate, a homogeneous distribution throughout the particles was observed. (1)H NMR, FTIR, X-ray and DSC studies indicated molecularly dispersed drug within the particles with preserved stability during microencapsulation and in simulated in vivo drug release conditions. In vitro drug release studies carried out in simulated in vivo conditions in respect to pH, enzymatic and salt content confirmed the potential of the particles to release the drug in a controlled manner. The diffusional exponents according to the general exponential release equation indicated anomalous (non-Fickian) transport in 5-ASA release controlled by a polymer relaxation, erosion and degradation. Biodistribution studies of [(131)I]-5-ASA loaded chitosan-Ca-alginate microparticles, carried out within 2 days after peroral administration to Wistar male rats in which TNBS colitis was induced, confirmed the dominant localization of 5-ASA in the colon with low systemic bioavailability.
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Liu, Jingjing; Sun, Faqian; Wang, Liang; Ju, Xi; Wu, Weixiang; Chen, Yingxu
2014-01-01
Methane can be used as an alternative carbon source in biological denitrification because it is nontoxic, widely available and relatively inexpensive. A microbial consortium involved in methane oxidation coupled to denitrification (MOD) was enriched with nitrite and nitrate as electron acceptors under micro-aerobic conditions. The 16S rRNA gene combined with pmoA phylogeny of methanotrophs and nirK phylogeny of denitrifiers were analysed to reveal the dominant microbial populations and functional microorganisms. Real-time quantitative polymerase chain reaction results showed high numbers of methanotrophs and denitrifiers in the enriched consortium. The 16S rRNA gene clone library revealed that Methylococcaceae and Methylophilaceae were the dominant populations in the MOD ecosystem. Phylogenetic analyses of pmoA gene clone libraries indicated that all methanotrophs belonged to Methylococcaceae, a type I methanotroph employing the ribulose monophosphate pathway for methane oxidation. Methylotrophic denitrifiers of the Methylophilaceae that can utilize organic intermediates (i.e. formaldehyde, citrate and acetate) released from the methanotrophs played a vital role in aerobic denitrification. This study is the first report to confirm micro-aerobic denitrification and to make phylogenetic and functional assignments for some members of the microbial assemblages involved in MOD. PMID:24245852
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Munoz-Saez, Carolina; Manga, Michael; Hurwitz, Shaul; Rudolph, Maxwell L.; Namiki, Atsuko; Wang, Chi-Yuen
2015-01-01
Despite more than 200 years of scientific study, the internal dynamics of geyser systems remain poorly characterized. As a consequence, there remain fundamental questions about what processes initiate and terminate eruptions, and where eruptions begin. Over a one-week period in October 2012, we collected down-hole measurements of pressure and temperature in the conduit of an exceptionally regular geyser (132 s/cycle) located in the Chilean desert. We identified four stages in the geyser cycle: (1) recharge of water into the conduit after an eruption, driven by the pressure difference between water in the conduit and in a deeper reservoir; (2) a pre-eruptive stage that follows the recharge and is dominated by addition of steam from below; (3) the eruption, which occurs by rapid boiling of a large mass of water at the top of the water column, and decompression that propagates boiling conditions downward; (4) a relaxation stage during which pressure and temperature decrease until conditions preceding the recharge stage are restored. Eruptions are triggered by the episodic addition of steam coming from depth, suggesting that the dynamics of the eruptions are dominated by geometrical and thermodynamic complexities in the conduit and reservoir. Further evidence favoring the dominance of internal processes in controlling periodicity is also provided by the absence of responses of the geyser to environmental perturbations (air pressure, temperature and probably also Earth tides).
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Gomez, Marinely Bustamante; Pessoa, Grasielle D'Avila Caldas; Rosa, Aline Cristine Luiz; Echeverria, Jorge Espinoza; Diotaiuti, Liléia Gonçalves
2015-11-16
Over the last few decades, pyrethroid-resistant in Triatoma infestans populations have been reported, mainly on the border between Argentina and Bolivia. Understanding the genetic basis of inheritance mode and heritability of resistance to insecticides under laboratory conditions is crucial for vector management and monitoring of insecticide resistance. Currently, few studies have been performed to characterize the inheritance mode of resistance to pyrethroids in T. infestans; for this reason, the present study aims to characterize the inheritance and heritability of deltamethrin resistance in T. infestans populations from Bolivia with different toxicological profiles. Experimental crosses were performed between a susceptible (S) colony and resistant (R) and reduced susceptibility (RS) colonies in both directions (♀ x ♂ and ♂ x ♀), and inheritance mode was determined based on degree of dominance (DO) and effective dominance (D(ML)). In addition, realized heritability (h(2)) was estimated based on a resistant colony, and select pressure was performed for two generations based on the diagnostic dose (10 ng. i. a. /nymph). The F1 progeny of the experimental crosses and the selection were tested by a standard insecticide resistance bioassay. The result for DO and D(ML) (< 1) indicates that resistance is an incompletely dominant character, and inheritance is autosomal, not sex-linked. The LD50 for F1 of ♀S x ♂R and ♂S x ♀R was 0.74 and 3.97, respectively, which is indicative of dilution effect. In the resistant colony, after selection pressure, the value of h(2) was 0.37; thus, the LD50 value increased 2.25-fold (F2) and 26.83-fold (F3) compared with the parental colony. The inheritance mode of resistance of T. infestans to deltamethrin, is autosomal and an incompletely dominant character; this is a previously known process, confirmed in the present study on T. infestans populations from Bolivia. The lethal doses (LD50) increase from one generation to another rapidly after selection pressure with deltamethrin. This suggests that resistance is an additive and cumulative factor, mainly in highly structured populations with limited dispersal capacity, such as T. infestans. This phenomenon was demonstrated for the first time for T. infestans in the present study. These results are very important for vector control strategies in problematic areas where high resistance ratios of T. infestans have been reported.
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Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment.
Wurzbacher, Christian; Fuchs, Andrea; Attermeyer, Katrin; Frindte, Katharina; Grossart, Hans-Peter; Hupfer, Michael; Casper, Peter; Monaghan, Michael T
2017-04-08
Lake sediments harbor diverse microbial communities that cycle carbon and nutrients while being constantly colonized and potentially buried by organic matter sinking from the water column. The interaction of activity and burial remained largely unexplored in aquatic sediments. We aimed to relate taxonomic composition to sediment biogeochemical parameters, test whether community turnover with depth resulted from taxonomic replacement or from richness effects, and to provide a basic model for the vertical community structure in sediments. We analyzed four replicate sediment cores taken from 30-m depth in oligo-mesotrophic Lake Stechlin in northern Germany. Each 30-cm core spanned ca. 170 years of sediment accumulation according to 137 Cs dating and was sectioned into layers 1-4 cm thick. We examined a full suite of biogeochemical parameters and used DNA metabarcoding to examine community composition of microbial Archaea, Bacteria, and Eukaryota. Community β-diversity indicated nearly complete turnover within the uppermost 30 cm. We observed a pronounced shift from Eukaryota- and Bacteria-dominated upper layers (<5 cm) to Bacteria-dominated intermediate layers (5-14 cm) and to deep layers (>14 cm) dominated by enigmatic Archaea that typically occur in deep-sea sediments. Taxonomic replacement was the prevalent mechanism in structuring the community composition and was linked to parameters indicative of microbial activity (e.g., CO 2 and CH 4 concentration, bacterial protein production). Richness loss played a lesser role but was linked to conservative parameters (e.g., C, N, P) indicative of past conditions. By including all three domains, we were able to directly link the exponential decay of eukaryotes with the active sediment microbial community. The dominance of Archaea in deeper layers confirms earlier findings from marine systems and establishes freshwater sediments as a potential low-energy environment, similar to deep sea sediments. We propose a general model of sediment structure and function based on microbial characteristics and burial processes. An upper "replacement horizon" is dominated by rapid taxonomic turnover with depth, high microbial activity, and biotic interactions. A lower "depauperate horizon" is characterized by low taxonomic richness, more stable "low-energy" conditions, and a dominance of enigmatic Archaea.
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Fundamental Rotorcraft Acoustic Modeling From Experiments (FRAME)
NASA Technical Reports Server (NTRS)
Greenwood, Eric
2011-01-01
A new methodology is developed for the construction of helicopter source noise models for use in mission planning tools from experimental measurements of helicopter external noise radiation. The models are constructed by employing a parameter identification method to an assumed analytical model of the rotor harmonic noise sources. This new method allows for the identification of individual rotor harmonic noise sources and allows them to be characterized in terms of their individual non-dimensional governing parameters. The method is applied to both wind tunnel measurements and ground noise measurements of two-bladed rotors. The method is shown to match the parametric trends of main rotor harmonic noise, allowing accurate estimates of the dominant rotorcraft noise sources to be made for operating conditions based on a small number of measurements taken at different operating conditions. The ability of this method to estimate changes in noise radiation due to changes in ambient conditions is also demonstrated.
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Singh, Kiran; Giri, B S; Sahi, Amrita; Geed, S R; Kureel, M K; Singh, Sanjay; Dubey, S K; Rai, B N; Kumar, Surendra; Upadhyay, S N; Singh, R S
2017-10-01
The main objective of this study was to evaluate the performance of wood charcoal as biofilter media under transient and high loading condition. Biofiltration of xylene was investigated for 150days in a laboratory scale unit packed with wood charcoal and inoculated with mixed microbial culture at the xylene loading rates ranged from 12 to 553gm -3 h -1 . The kinetic analysis of the xylene revealed absence of substrate inhibition and possibility of achieving higher elimination under optimum condition. The pH, temperature, pressure drop and CO 2 production rate were regularly monitored during the experiments. Throughout experimental period, the removal efficiency (RE) was found to be in the range of 65-98.7% and the maximum elimination capacity (EC) was 405.7gm -3 h -1 . Molecular characterization results show Bacillus sp. as dominating microbial group in the biofilm. Copyright © 2017 Elsevier Ltd. All rights reserved.
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Advances in Dynamic Transport of Organic Contaminants in Karst Groundwater Systems
NASA Astrophysics Data System (ADS)
Padilla, I. Y.; Vesper, D.; Alshawabkeh, A.; Hellweger, F.
2011-12-01
Karst groundwater systems develop in soluble rocks such as limestone, and are characterized by high permeability and well-developed conduit porosity. These systems provide important freshwater resources for human consumption and ecological integrity of streams, wetlands, and coastal zones. The same characteristics that make karst aquifers highly productive make them highly vulnerable to contamination. As a result, karst aquifers serve as an important route for contaminants exposure to humans and wildlife. Transport of organic contaminants in karst ground-water occurs in complex pathways influenced by the flow mechanism predominating in the aquifer: conduit-flow dominated systems tend to convey solutes rapidly through the system to a discharge point without much attenuation; diffuse-flow systems, on the other hand, can cause significant solute retardation and slow movement. These two mechanisms represent end members of a wide spectrum of conditions found in karst areas, and often a combination of conduit- and diffuse-flow mechanisms is encountered, where both flow mechanisms can control the fate and transport of contaminants. This is the case in the carbonate aquifers of northern Puerto Rico. This work addresses advances made on the characterization of fate and transport processes in karst ground-water systems characterized by variable conduit and/or diffusion dominated flow under high- and low-flow conditions. It involves laboratory-scale physical modeling and field-scale sampling and historical analysis of contaminant distribution. Statistical analysis of solute transport in Geo-Hydrobed physical models shows the heterogeneous character of transport dynamics in karstic units, and its variability under different flow regimes. Field-work analysis of chlorinated volatile organic compounds and phthalates indicates a large capacity of the karst systems to store and transmit contaminants. This work is part of the program "Puerto Rico Testsite for Exploring Contamination Threats (PRoTECT)" supported by the National Institute of Environmental Health Sciences (NIEHS, Grant Award No. P42ES017198).
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Lambert, Rebecca B.; Opsahl, Stephen P.; Musgrove, MaryLynn
2017-12-22
Located in south-central Texas, the Geronimo Creek and Plum Creek watersheds have long been characterized by elevated nitrate concentrations. From April 2015 through March 2016, an assessment was done by the U.S. Geological Survey, in cooperation with the Guadalupe-Blanco River Authority and the Texas State Soil and Water Conservation Board, to characterize nitrate concentrations and to document possible sources of elevated nitrate in these two watersheds. Water-quality samples were collected from stream, spring, and groundwater sites distributed across the two watersheds, along with precipitation samples and wastewater treatment plant (WWTP) effluent samples from the Plum Creek watershed, to characterize endmember concentrations and isotopic compositions from April 2015 through March 2016. Stream, spring, and groundwater samples from both watersheds were collected during four synoptic sampling events to characterize spatial and temporal variations in water quality and chemical loadings. Water-quality and -quantity data from the WWTPs and stream discharge data also were considered. Samples were analyzed for major ions, selected trace elements, nutrients, and stable isotopes of water and nitrate.The dominant land use in both watersheds is agriculture (cultivated crops, rangeland, and grassland and pasture). The upper part of the Plum Creek watershed is more highly urbanized and has five major WWTPs; numerous smaller permitted wastewater outfalls are concentrated in the upper and central parts of the Plum Creek watershed. The Geronimo Creek watershed, in contrast, has no WWTPs upstream from or near the sampling sites.Results indicate that water quality in the Geronimo Creek watershed, which was evaluated only during base-flow conditions, is dominated by groundwater, which discharges to the stream by numerous springs at various locations. Nitrate isotope values for most Geronimo Creek samples were similar, which indicates that they likely have a common source (or sources) of nitrate. Nitrate sources in the Geronimo Creek watershed include a predominance of nitrate from fertilizer applications, as well as a contribution from septic systems. Additional nitrate loading from these sources is ongoing. Chemical loadings of dissolved solids, chloride, and sulfate varied little among sampling events and were low at most sites because of low streamflow.In contrast to the Geronimo Creek watershed, nitrate sources in the Plum Creek watershed are dominated by effluent discharge from the major WWTPs in the upper and central parts of the watershed. Results indicate that discharge from these WWTPs accounts for the majority of base flow in the watershed. Nitrate concentrations in Plum Creek were dependent on flow conditions, with the highest concentrations measured at lower flows, when flow is dominated by WWTP effluent discharge. In addition to WWTP effluent discharge, the Plum Creek watershed, similar to the Geronimo Creek watershed, also is affected by historical and current loading of nitrate from fertilizer applications and from septic systems in the watershed. Chemical loadings of dissolved solids, chloride, sulfate, and nitrate in Plum Creek at lower flow conditions are highest at the upstream sites and decrease downstream as distance from the WWTPs increases, which is consistent with WWTP effluent as an important control on water quality. Under higher flow conditions, however, nitrate loads to Plum Creek increased by about a factor of three. These higher nitrate loads cannot be accounted for by WWTP effluent discharge from the five major WWTPs in the watershed. This additional loading indicates that nitrate is exported from the northeastern part of the watershed. In the lower part of the Plum Creek watershed, higher concentrations of dissolved solids, chloride, and sulfate occur, which might be affected by produced water associated with oil and gas exploration, or mixing with saline groundwater.
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Response of benthic algae to environmental gradients in an agriculturally dominated landscape
Munn, M.D.; Black, R.W.; Gruber, S.J.
2002-01-01
Benthic algal communities were assessed in an agriculturally dominated landscape in the Central Columbia Plateau, Washington, to determine which environmental variables best explained species distributions, and whether algae species optima models were useful in predicting specific water-quality parameters. Land uses in the study area included forest, range, urban, and agriculture. Most of the streams in this region can be characterized as open-channel systems influenced by intensive dryland (nonirrigated) and irrigated agriculture. Algal communities in forested streams were dominated by blue-green algae, with communities in urban and range streams dominated by diatoms. The predominance of either blue-greens or diatoms in agricultural streams varied greatly depending on the specific site. Canonical correspondence analysis (CCA) indicated a strong gradient effect of several key environmental variables on benthic algal community composition. Conductivity and % agriculture were the dominant explanatory variables when all sites (n = 24) were included in the CCA; water velocity replaced conductivity when the CCA included only agricultural and urban sites. Other significant explanatory variables included dissolved inorganic nitrogen (DIN), orthophosphate (OP), discharge, and precipitation. Regression and calibration models accurately predicted conductivity based on benthic algal communities, with OP having slightly lower predictability. The model for DIN was poor, and therefore may be less useful in this system. Thirty-four algal taxa were identified as potential indicators of conductivity and nutrient conditions, with most indicators being diatoms except for the blue-greens Anabaenasp. and Lyngbya sp.
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Characterizing Novel Archaeal Lineages in Salton Sea Sediments
NASA Astrophysics Data System (ADS)
Tarn, J.; Valentine, D. L.
2016-12-01
Biological communities in extreme environments are often dominated by microorganisms of the domain Archaea. Abundant microbial assemblages of this group are found in the hottest, saltiest, and most thermodynamically-limited ecosystems on earth. These taxing surroundings are thought to impose a state of chronic energy stress on resident organisms due to high costs of cellular maintenance relative to resource availability. Even in more temperate settings, Archaea are regularly associated with low-nutrient lifestyles, reflecting their adaptation to extreme, biologically-limiting conditions, which may be an ancestral, domain-wide trait. In this study, we seek to characterize the Archaeal community of the Salton Sea, where members of this domain are novel and highly abundant. Previous work by Swan et al. in 2010 showed that gradients in salinity, sulfate, carbon and nitrogen across sediment horizons of the Salton Sea are linked to changes in Archaeal dominance and community structure. In light of recent taxonomic revisions of the domain, I reclassified the 107 published small subunit rRNA Archaeal sequences from the 2010 study using updated reference databases. The majority of these Euryarchaeal sequences were reassigned to the so-called DPANN superphylum, with Pacearchaeota-related sequences being very abundant in shallow, organic-rich sediments. In deeper, energy-limited strata, several groups of Bathyarchaeota and one divergent DPANN clade were dominant. Ongoing metagenomic work on these sediment communities is being used to assemble genomes of these novel Archaeal groups. These results will help define genomic adaptations of Salton Sea Archaea to varying levels of energy stress as well as inform future cultivation efforts.
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Ichthyoplankton assemblages of coastal west-central Lake Erie and associated habitat characteristics
McKenna, J.E.; Hunter, R. Douglas; Fabrizio, M.C.; Savino, J.F.; Todd, T.N.; Bur, M.
2008-01-01
Early life stage survival often determines fish cohort strength and that survival is affected by habitat conditions. The structure and dynamics of ichthyoplankton assemblages can tell us much about biodiversity and fish population dynamics, but are poorly understood in nearshore areas of the Great Lakes, where most spawning and nursery habitats exist. Ichthyoplankton samples were collected with a neuston net in waters 2-13 m deep weekly or biweekly from mid-April through August, during 3 years (2000-2002) as part of a study of fish assemblages in west-central Lake Erie. A suite of abiotic variables was simultaneously measured to characterize habitat. Cluster and ordination analyses revealed several distinct ichthyoplankton assemblages that changed seasonally. A lake whitefish (Coregonus clupeaformis) dominated assemblage appeared first in April. In May, assemblages were dominated by several percid species. Summer assemblages were overwhelmingly dominated by emerald shiner (Notropis atherinoides), with large gizzard shad (Dorosoma cepedianum) and alewife (Alosa pseudoharengus) components. This seasonal trend in species assemblages was also associated with increasing temperature and water clarity. Water depth and drift processes may also play a role in structuring these assemblages. The most common and widely distributed assemblages were not associated with substratum type, which we characterized as either hard or soft. The timing of hatch and larval growth separated the major groups in time and may have adaptive significance for the members of each major assemblage. The quality and locations (with reference to lake circulation) of spawning and nursery grounds may determine larval success and affect year class strength.
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Urubschurov, Vladimir; Janczyk, Pawel; Pieper, Robert; Souffrant, Wolfgang B
2008-12-01
The study was conducted to determine yeasts present in the gastrointestinal tract (GIT) of piglets kept under experimental farm (EF) and commercial farm (CF) conditions. Ninety five German Landrace full- and half-sibling piglets were sacrificed at 39 days of age. Sixty eight piglets were weaned at 28th day of life, when they were offered one diet ad libitum. Twenty seven piglets remained unweaned by their dams. None of the piglets received any creep feed before weaning. Digesta samples were collected from 1/3 distal small intestine (SI), caecum and proximal colon. One hundred seventy three colonies of isolated yeasts were characterized by sequence analysis of the PCR-amplified D1/D2 domain of the 26S rRNA gene with following alignment of the recovered sequences to GenBank entries. From the 17 phylotypes found, isolates most closely related to Galactomyces geotrichum, Kazachstania slooffiae and Candida catenulata dominated in the GIT of CF piglets. Kazachstania slooffiae and Candida glabrata dominated in GIT of EF piglets. Sørenson and Morisita-Horn similarity indices between farms were low (0.44 and 0.54 respectively) and the Simpson diversity index was higher for EF (7.58) than for CF (4.34). The study brings new data on yeasts composition in the pig GIT and shows differences in yeasts biodiversity between farms operated at different hygiene conditions.
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Furukawa, Kiminobu; Suzuki, Harue; Fukuda, Jun
2012-11-01
To observe the real-time muscle activity of bilateral hands while subjects draw circles under 2 conditions: with and without using Ramachandran's mirror-box. A total of 24 healthy volunteers. Subjects drew 4 circles sequentially using their dominant hand with the other hand at rest, both with and without looking at a mirror image. Circles were marked by 8 dots on the paper, which subjects connected up to draw the shape. The activity of the bilateral first dorsal interosseus muscles was recorded using surface electromyography. Muscle activity of the dominant hand remained constant during each task. In contrast, muscle activity of the non-dominant hand increased under the condition of watching the image in the mirror, but was low under the non-watching condition. Furthermore, muscle activity of the non-dominant hand increased over the duration of the task. However, wide variation between subjects was observed under the mirror-image condition. Increased muscle action potential of the non-dominant hand may be induced by the circle drawing task of the dominant hand during Ramachandran's mirror-box therapy, which supports previous observations of increased brain activity caused by watching a mirror image.
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Characterization of thermophilic fungal community associated with pile fermentation of Pu-erh tea.
Zhang, Wei; Yang, Ruijuan; Fang, Wenjun; Yan, Liang; Lu, Jun; Sheng, Jun; Lv, Jie
2016-06-16
This study aimed to characterize the thermophilic fungi in pile-fermentation process of Pu-erh tea. Physicochemical analyses showed that the high temperature and low pH provided optimal conditions for propagation of fungi. A number of fungi, including Blastobotrys adeninivorans, Thermomyces lanuginosus, Rasamsonia emersonii, Aspergillus fumigatus, Rhizomucor pusillus, Rasamsonia byssochlamydoides, Rasamsonia cylindrospora, Aspergillus tubingensis, Aspergillus niger, Candida tropicalis and Fusarium graminearum were isolated as thermophilic fungi under combination of high temperature and acid culture conditions from Pu-erh tea pile-fermentation. The fungal communities were analyzed by PCR-DGGE. Results revealed that those fungi are closely related to Debaryomyces hansenii, Cladosporium cladosporioides, A. tubingensis, R. emersonii, R. pusillus, A. fumigatus and A. niger, and the last four presented as dominant species in the pile process. These four preponderant thermophilic fungi reached the order of magnitude of 10(7), 10(7), 10(7) and 10(6)copies/g dry tea, respectively, measured by real-time quantitative PCR (q-PCR). The results indicate that the thermophilic fungi play an important role in Pu-erh tea pile fermentation. Copyright © 2016 Elsevier B.V. All rights reserved.
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Characterization of the Dynamic Pressure Response of Fuels in Microchannels
NASA Astrophysics Data System (ADS)
Haendler, Brenda; Pisano, Albert; Liepmann, Dorian
2004-11-01
In order to create a self-pumping fuel vaporization and delivery systems for a MEMS rotary engine power system, the dynamic pressure response due to phase eruption of fuels in micro channels must be characterized. Testing is done using micro channels with diameters the same order of magnitude as the critical bubble radius, a constant mass flow rate syringe pump, and a steady heat source. Pressure changes in the micro channel due to the periodic movement of the phase change meniscus are measured for a variety of flow conditions. A discrete Fourier transform is performed on the data to determine the dominant frequencies in the signal. Critical trends are discussed comparing both the frequency and the amplitude of the pressure spikes for a variety of temperatures and flow rates. The results presented on the trends in the pressure signature due to phase eruption for fuels are then related back to the fuel delivery system, which is using a nozzle-diffuser design to accomplish positive flow rectification given the periodic pressure condition at the phase eruption interface.
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NASA Technical Reports Server (NTRS)
Kim, Kyong H.; Choi, Young S.; Barnes, Norman P.; Hess, Robert V.; Bair, Clayton H.; Brockman, Philip
1993-01-01
Flash-lamp-pumped normal-mode and Q-switched 2.1-micron laser operations of Ho:Tm:Cr:YAG crystals have been evaluated under a wide variety of experimental conditions in order to determine an optimum lasing condition and to characterize the laser outputs. Q-switched laser-output energies equal to, or in some cases exceeding the normal-mode laser energies, were obtained in the form of a strong single spike through an optimization of the opening time of a lithium niobate Q switch. The increase of the normal-mode laser slope efficiency was observed with the increase of the Tm concentration from 2.5 to 4.5 at. pct at operating temperatures from 120 K to near room temperature. Laser transitions were observed only at 2.098 and 2.091 microns under various conditions. The 2.091-micron laser transition appeared to be dominant at high-temperature operations with low-reflective-output couplers.
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Acerbi, E; Chénard, C; Miller, D; Gaultier, N E; Heinle, C E; Chang, V W-C; Uchida, A; Drautz-Moses, D I; Schuster, S C; Lauro, F M
2017-03-01
Air-conditioning systems harbor microorganisms, potentially spreading them to indoor environments. While air and surfaces in air-conditioning systems are periodically sampled as potential sources of indoor microbes, little is known about the dynamics of cooling coil-associated communities and their effect on the downstream airflow. Here, we conducted a 4-week time series sampling to characterize the succession of an air-conditioning duct and cooling coil after cleaning. Using an universal primer pair targeting hypervariable regions of the 16S/18S ribosomal RNA, we observed a community succession for the condensed water, with the most abundant airborne taxon Agaricomycetes fungi dominating the initial phase and Sphingomonas bacteria becoming the most prevalent taxa toward the end of the experiment. Duplicate air samples collected upstream and downstream of the coil suggest that the system does not act as ecological filter or source/sink for specific microbial taxa during the duration of the experiment. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.
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Polycystic Kidney Disease: Pathogenesis and Potential Therapies
Takiar, Vinita; Caplan, Michael J.
2011-01-01
Autosomal dominant polycystic kidney disease (ADPKD) is a prevalent, inherited condition for which there is currently no effective specific clinical therapy. The disease is characterized by the progressive development of fluid-filled cysts derived from renal tubular epithelial cells which gradually compress the parenchyma and compromise renal function. Current interests in the field focus on understanding and exploiting signaling mechanisms underlying disease pathogenesis as well as delineating the role of the primary cilium in cystogenesis. This review highlights the pathogenetic pathways underlying renal cyst formation as well as novel therapeutic targets for the treatment of PKD. PMID:21146605
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Heterogeneous propellant internal ballistics: criticism and regeneration
NASA Astrophysics Data System (ADS)
Glick, R. L.
2011-10-01
Although heterogeneous propellant and its innately nondeterministic, chemically discrete morphology dominates applications, ballisticcharacterization deterministic time-mean burning rate and acoustic admittance measures' absence of explicit, nondeterministic information requires homogeneous propellant with a smooth, uniformly regressing burning surface: inadequate boundary conditions for heterogeneous propellant grained applications. The past age overcame this dichotomy with one-dimensional (1D) models and empirical knowledge from numerous, adequately supported motor developments and supplementary experiments. However, current cost and risk constraints inhibit this approach. Moreover, its fundamental science approach is more sensitive to incomplete boundary condition information (garbage-in still equals garbage-out) and more is expected. This work critiques this situation and sketches a path forward based on enhanced ballistic and motor characterizations in the workplace and approximate model and apparatus developments mentored by CSAR DNS capabilities (or equivalent).
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Time-resolved characterization of primary emissions from residential wood combustion appliances.
Heringa, M F; DeCarlo, P F; Chirico, R; Lauber, A; Doberer, A; Good, J; Nussbaumer, T; Keller, A; Burtscher, H; Richard, A; Miljevic, B; Prevot, A S H; Baltensperger, U
2012-10-16
Primary emissions from a log wood burner and a pellet boiler were characterized by online measurements of the organic aerosol (OA) using a high-resolution time-of-flight aerosol mass spectrometer (HR-TOF-AMS) and of black carbon (BC). The OA and BC concentrations measured during the burning cycle of the log wood burner, batch wise fueled with wood logs, were highly variable and generally dominated by BC. The emissions of the pellet burner had, besides inorganic material, a high fraction of OA and a minor contribution of BC. However, during artificially induced poor burning BC was the dominating species with ∼80% of the measured mass. The elemental O:C ratio of the OA was generally found in the range of 0.2-0.5 during the startup phase or after reloading of the log wood burner. During the burnout or smoldering phase, O:C ratios increased up to 1.6-1.7, which is similar to the ratios found for the pellet boiler during stable burning conditions and higher than the O:C ratios observed for highly aged ambient OA. The organic emissions of both burners have a very similar H:C ratio at a given O:C ratio and therefore fall on the same line in the Van Krevelen diagram.
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Hydrogeochemical investigations in a drained lake area: the case of Xynias basin (Central Greece).
Charizopoulos, Nikos; Zagana, Eleni; Stamatis, Georgios
2016-08-01
In Xynias drained Lake Basin's area, central Greece, a hydrogeochemical research took place including groundwater sampling from 30 sampling sites, chemical analysis, and statistical analysis. Groundwaters present Ca-Mg-HCO3 as the dominant hydrochemical type, while their majority is mixed waters with non-dominant ion. They are classified as moderately hard to hard and are characterized by oxidizing conditions. They are undersaturated with respect to gypsum, anhydrite, fluorite, siderite, and magnesite and oversaturated in respect to calcite, aragonite, and dolomite. Nitrate concentration ranges from 4.4 to 107.4 mg/L, meanwhile 13.3 % of the samples exceed the European Community (E.C.) drinking water permissible limit. The trace elements Fe, Ni, Cr, and Cd present values of 30, 80, 57, and 50 %, respectively, above the maximum permissible limit set by E.C. Accordingly, the majority of the groundwaters are considered unsuitable for drinking water needs. Sodium adsorption ratio values (0.04-3.98) and the electrical conductivity (227-1200 μS/cm) classify groundwaters as suitable for irrigation uses, presenting low risk and medium soil alkalization risk. Factor analysis shows that geogenic processes associated with the former lacustrine environment and anthropogenic influences with the use of fertilizers are the major factors that characterized the chemical composition of the groundwaters.
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Microbial Community Structure in Relation to Water Quality in ...
Weeks Bay is a shallow, microtidal, eutrophic sub-estuary of Mobile Bay, AL. High watershed nutrient inputs to the estuary contribute to a eutrophic condition characterized by frequent summertime diel-cycling hypoxia and dissolved oxygen (DO) oversaturation. Spatial and seasonal variability of microbial communities that contribute to estuarine ecosystem metabolism were characterized using high-throughput DNA sequencing. Surface water samples were collected from spring to fall at three sites along a transect of Weeks Bay from the Fish River to Mobile Bay. Water samples were analyzed for physiochemical properties and were also filtered onto Sterivex filters for DNA extraction. Genes for 16S rRNA and 18S rRNA were amplified and sequenced according to Earth Microbiome Project protocols. Sequences were assembled into contigs and clustered into OTUs with mothur using the Silva database. The prokaryotes were dominated by Cyanobacteria, Actinobacteria, and Spartobacteria, whereas the eukaryotes were dominated by Bacillariophyta (diatoms). Multivariate statistical analysis of microbial community composition and environmental data showed that Bacteria, Archaea and Eukaryota were clustered by season. BEST analysis by station showed that prokaryotic community structure was associated with salinity and CDOM (Rho=0.924), whereas eukaryotic community structure was most associated with salinity (Rho=0.846). Prokaryotic community structure within seasons was associated with six
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Weakly ionized cosmic gas: Ionization and characterization
NASA Technical Reports Server (NTRS)
Rosenberg, M.; Mendis, D. A.; Chow, V. W.
1994-01-01
Since collective plasma behavior may determine important transport processes (e.g., plasma diffusion across a magnetic field) in certain cosmic environments, it is important to delineate the parameter space in which weakly ionized cosmic gases may be characterized as plasmas. In this short note, we do so. First, we use values for the ionization fraction given in the literature, wherein the ionization is generally assumed to be due primarily to ionization by cosmic rays. We also discuss an additional mechanism for ionization in such environments, namely, the photoelectric emission of electrons from cosmic dust grains in an interstellar Far Ultra Violet (FUV) radiation field. Simple estimates suggest that under certain conditions this mechanism may dominate cosmic ray ionization, and possibly also the photoionization of metal atoms by the interstellar FUV field, and thereby lead to an enhanced ionization level.
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Morrison, Kathleen E.; Bader, Lauren R.; Clinard, Catherine T.; Gerhard, Danielle M.; Gross, Sonya E.; Cooper, Matthew A.
2014-01-01
Resilience is an active process that involves a discrete set of neural substrates and cellular mechanisms and enables individuals to avoid some of the negative consequences of extreme stress. We have previously shown that dominant individuals show less stress-induced changes in behavior compared to subordinates using a conditioned defeat model in male Syrian hamsters (Mesocricetus auratus). To rule out pre-existing differences between dominants and subordinates, we examined whether 14 days of dominance experience is required to reduce the conditioned defeat response and whether the development of conditioned defeat resistance correlates with defeat-induced neural activation in select brain regions. We paired hamsters in daily 5-min aggressive encounters for 1, 7, or 14 days and then exposed animals to 3, 5-min social defeat episodes. The next day animals received conditioned defeat testing which involved a 5-min social interaction test with a non-aggressive intruder. In separate animals brains were collected after social defeat for c-Fos immunohistochemistry. We found that 14-day dominants showed a decreased conditioned defeat response compared to 14-day subordinates and controls, while 1-day and 7-day dominants did not differ from their subordinate counterparts. Also, the duration of dominance relationship was associated with distinct patterns of defeat-induced neural activation such that only 14-day dominants showed elevated c-Fos immunoreactivity in the ventral medial prefrontal cortex, medial amygdala, and lateral portions of the ventral medial hypothalamus. Our data suggest that resistance to social stress develops during the maintenance of dominance relationships and is associated with experience-dependent neural plasticity in select brain regions. PMID:24875769
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Kumar, S; Deffenbacher, K; Marres, H A; Cremers, C W; Kimberling, W J
2000-01-01
Branchio-oto-renal (BOR) syndrome is characterized by ear malformations, cervical fistulas, hearing loss, and renal anomalies. It is an autosomal dominant disorder with variable clinical manifestations. The most common features of BOR syndrome are branchial, hearing, and renal anomalies. However, many affected subjects have been observed with branchial-cleft anomalies and hearing loss but without renal anomalies, a condition called "branchio-otic" (BO) syndrome. It is logical to question whether the BOR and BO syndromes are allelic or whether they represent distinct genetic entities. We identified a very large extended family whose members had branchial and hearing anomalies associated with commissural lip pits that segregated in an autosomal dominant fashion. Using a genomewide search strategy, we identified genetic linkage, with a maximum LOD score of 4.81 at recombination fraction 0, between the BO phenotype and polymorphic marker D1S2757 in the genetic region of chromosome 1q31. This is the first report of linkage for a second gene associated with BOR syndrome. The findings have important clinical implications and will provide insight into the genetic basis of BOR syndrome. PMID:10762556
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Vrancken, Gino; Rimaux, Tom; Weckx, Stefan; Leroy, Frédéric; De Vuyst, Luc
2011-01-01
Sourdough fermentation is a cereal fermentation that is characterized by the formation of stable yeast/lactic acid bacteria (LAB) associations. It is a unique process among food fermentations in that the LAB that mostly dominate these fermentations are heterofermentative. In the present study, four wheat sourdough fermentations were carried out under different conditions of temperature and backslopping time to determine their effect on the composition of the microbiota of the final sourdoughs. A substantial effect of temperature was observed. A fermentation with 10 backsloppings (once every 24 h) at 23°C resulted in a microbiota composed of Leuconostoc citreum as the dominant species, whereas fermentations at 30 and 37°C with backslopping every 24 h resulted in ecosystems dominated by Lactobacillus fermentum. Longer backslopping times (every 48 h at 30°C) resulted in a combination of Lactobacillus fermentum and Lactobacillus plantarum. Residual maltose remained present in all fermentations, except those with longer backslopping times, and ornithine was found in almost all fermentations, indicating enhanced sourdough-typical LAB activity. The sourdough-typical species Lactobacillus sanfranciscensis was not found. Finally, a nonflour origin for this species was hypothesized. PMID:21335386
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Clinard, Catherine T.; Barnes, Abigail K.; Adler, Samuel G.; Cooper, Matthew A.
2016-01-01
Winning aggressive disputes is one of several experiences that can alter responses to future stressful events. We have previously tested dominant and subordinate male Syrian hamsters in a conditioned defeat model and found that dominant individuals show less change in behavior following social defeat stress compared to subordinates and controls, indicating a reduced conditioned defeat response. Resistance to the effects of social defeat in dominants is experience-dependent and requires the maintenance of dominance relationships for 14 days. For this study we investigated whether winning aggressive interactions increases plasma testosterone and whether repeatedly winning increases androgen receptor expression. First, male hamsters were paired in daily 10-min aggressive encounters and blood samples were collected immediately before and 15-min and 30-min after the formation of dominance relationships. Dominants showed an increase in plasma testosterone at 15-min post-interaction compared to their pre-interaction baseline, whereas subordinates and controls showed no change in plasma testosterone. Secondly, we investigated whether 14 days of dominant social status increased androgen or estrogen alpha-receptor immunoreactivity in brain regions that regulate the conditioned defeat response. Dominants showed more androgen, but not estrogen alpha, receptor immuno-positive cells in the dorsal medial amygdala (dMeA) and ventral lateral septum (vLS) compared to subordinates and controls. Finally, we showed that one day of dominant social status was insufficient to increase androgen receptor immunoreactivity compared to subordinates. These results suggest that elevated testosterone signaling at androgen receptors in the dMeA and vLS might contribute to the reduced conditioned defeat response exhibited by dominant hamsters. PMID:27619945
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Specific tackling situations affect the biomechanical demands experienced by rugby union players.
Seminati, Elena; Cazzola, Dario; Preatoni, Ezio; Trewartha, Grant
2017-03-01
Tackling in Rugby Union is an open skill which can involve high-speed collisions and is the match event associated with the greatest proportion of injuries. This study aimed to analyse the biomechanics of rugby tackling under three conditions: from a stationary position, with dominant and non-dominant shoulder, and moving forward, with dominant shoulder. A specially devised contact simulator, a 50-kg punch bag instrumented with pressure sensors, was translated towards the tackler (n = 15) to evaluate the effect of laterality and tackling approach on the external loads absorbed by the tackler, on head and trunk motion, and on trunk muscle activities. Peak impact force was substantially higher in the stationary dominant (2.84 ± 0.74 kN) than in the stationary non-dominant condition (2.44 ± 0.64 kN), but lower than in the moving condition (3.40 ± 0.86 kN). Muscle activation started on average 300 ms before impact, with higher activation for impact-side trapezius and non-impact-side erector spinae and gluteus maximus muscles. Players' technique for non-dominant-side tackles was less compliant with current coaching recommendations in terms of cervical motion (more neck flexion and lateral bending in the stationary non-dominant condition) and players could benefit from specific coaching focus on non-dominant-side tackles.
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Zhang, Hui; Xian, Weiwei; Liu, Shude
2015-01-01
The ichthyoplankton assemblage structure in the Yangtze Estuary was analyzed based on four springs in 1999, 2001, 2004 and 2007 in order to provide detailed characterizations of the ichthyoplankton assemblage in springs, examine the long-term dynamics of spring ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. Forty-two ichthyoplankton species belonging to 23 families were collected. Engraulidae was the most abundant family, including six species and comprising 67.91% of the total catch. Only four species (Coilia mystus, Engraulis japonicus, Trachidermis fasciatus and Allanetta bleekeri) could be considered dominant, accounting for 88.70% of total abundance. The structure of the ichthyoplankton spring assemblage persisted on an annual basis, with the dominant species reappearing consistently even though their abundance fluctuated from year to year. This inter-annual variation probably reflects variable environmental conditions influenced by jellyfish blooms, declining river flow, and overfishing. Canonical correspondence analysis indicated aspatial structure of the ichthyoplankton assemblage in three areas: (1) an inner assemblage dominated by C. mystus; (2) a central assemblage dominated by A. bleekeri and T. fasciatus; and (3) a shelf assemblage featuring E. japonicus. The observed ichthyoplankton assemblage structure appears to be strongly influenced by depth, salinity and suspended particulate matter gradients.
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Zhang, Hui; Liu, Shude
2015-01-01
The ichthyoplankton assemblage structure in the Yangtze Estuary was analyzed based on four springs in 1999, 2001, 2004 and 2007 in order to provide detailed characterizations of the ichthyoplankton assemblage in springs, examine the long-term dynamics of spring ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. Forty-two ichthyoplankton species belonging to 23 families were collected. Engraulidae was the most abundant family, including six species and comprising 67.91% of the total catch. Only four species (Coilia mystus, Engraulis japonicus, Trachidermis fasciatus and Allanetta bleekeri) could be considered dominant, accounting for 88.70% of total abundance. The structure of the ichthyoplankton spring assemblage persisted on an annual basis, with the dominant species reappearing consistently even though their abundance fluctuated from year to year. This inter-annual variation probably reflects variable environmental conditions influenced by jellyfish blooms, declining river flow, and overfishing. Canonical correspondence analysis indicated aspatial structure of the ichthyoplankton assemblage in three areas: (1) an inner assemblage dominated by C. mystus; (2) a central assemblage dominated by A. bleekeri and T. fasciatus; and (3) a shelf assemblage featuring E. japonicus. The observed ichthyoplankton assemblage structure appears to be strongly influenced by depth, salinity and suspended particulate matter gradients. PMID:26312180
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Martinson, Guntars O; Pommerenke, Bianca; Brandt, Franziska B; Homeier, Jürgen; Burneo, Juan I; Conrad, Ralf
2018-02-01
Several thousands of tank bromeliads per hectare of neotropical forest create a unique wetland ecosystem that emits substantial amounts of CH 4 . Tank bromeliads growing in the forest canopy (functional type-II tank bromeliads) were found to emit more CH 4 than tank bromeliads growing on the forest floor (functional type-I tank bromeliads) but the reasons for this difference and the underlying microbial CH 4 -cycling processes have not been studied. Therefore, we characterized archaeal communities in bromeliad tanks of the two different functional types in a neotropical montane forest of southern Ecuador using terminal-restriction fragment length polymorphism (T-RFLP) and performed tank-slurry incubations to measure CH 4 production potential, stable carbon isotope fractionation and pathway of CH 4 formation. The archaeal community composition was dominated by methanogens and differed between bromeliad functional types. Hydrogenotrophic Methanomicrobiales were the dominant methanogens and hydrogenotrophic methanogenesis was the dominant methanogenic pathway among all bromeliads. The relative abundance of aceticlastic Methanosaetaceae and the relative contribution of aceticlastic methanogenesis increased in type-I tank bromeliads probably due to more oxic conditions in type-I than in type-II bromeliads leading to the previously observed lower in situ CH 4 emissions from type-I tank bromeliads but to higher CH 4 production potentials in type-I tank bromeliad slurries. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.
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NASA Astrophysics Data System (ADS)
Lavery, Andone C.; Lawson, Gareth L.; Wiebe, Peter H.
2005-09-01
A series of acoustic surveys of zooplankton and micronekton have been performed in the Gulf of Maine (GOM), off the northeast United States, and along the western Antarctic Peninsula (WAP). Similar techniques were used to survey these regions, including multifrequency acoustic backscatter (43, 120, 200, 420, 1000 kHz), MOCNESS, CTD, VPR, and in some instances physical microstructure measurements. The GOM is characterized by heterogeneous zooplankton communities in which biomass is dominated by abundant millimeter sized copepods, but the scattering is frequently dominated by a smaller number of strong scatterers, such as shelled pteropods and gas-bearing siphonophores. Heterogeneous zooplankton communities are also observed in the WAP, but patches of comparatively large (40 mm) Antarctic krill are present and often dominate the scattering. In both regions, striking patterns are evident in the backscatter that can be related to the biological community structure and physical processes. Differences in community structure, however, strongly affect the quantitative inferences that can be made based on the acoustic data. Combining direct biological and environmental information with recently developed scattering models has allowed dominant scatterers to be identified and inferences to be made regarding the physical factors influencing backscatter variability, though only under limited conditions. Highlights from these studies and lessons learned regarding our ability to interpret multifrequency acoustics are presented.
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The role of tyramine and octopamine in the regulation of reproduction in queenless worker honeybees
NASA Astrophysics Data System (ADS)
Salomon, Mor; Malka, Osnat; Meer, Robert K. Vander; Hefetz, Abraham
2012-02-01
In honeybees, workers under queenless condition compete for reproduction and establish reproductive dominance hierarchy. Ovary activation is generally accompanied by the expression of queen-like pheromones. Biogenic amines (BAs), in particular dopamine, are believed to be involved in this process by regulating ovarian development. However, the role of BAs in establishing reproductive dominance or their effect on queen-like pheromone production was not investigated. Here, we explored the effect of octopamine (OA) and tyramine (TA) oral treatments on the propensity of treated bees to become reproductively dominant and produce queen-like pheromones in Dufour's and mandibular glands. One bee in a pair was treated with either OA or TA while the other was fed sugar solution. TA was found to enhance ovary development and the production of esters in the Dufour's gland and 9HDA (queen component) in the mandibular glands, thus facilitating worker reproductive dominance. OA, on the other hand, did not enhance ovarian development or ester production, but increased the production of 10HDA (worker major component) in the mandibular glands of their sugar-paired mates. OA is known to induce foraging behavior by workers, while increased production of 10HDA characterizes nursing workers. Therefore, we suggest that TA induces reproductive division of labor, while OA treatment results in caste differentiation of workers to foragers and nurses.
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NASA Astrophysics Data System (ADS)
Reinemann, Scott A.; Porinchu, David F.; Bloom, Amy M.; Mark, Bryan G.; Box, Jason E.
2009-11-01
A sediment core spanning ˜ 7000 cal yr BP recovered from Stella Lake, a small sub-alpine lake located in Great Basin National Park, Nevada, was analyzed for subfossil chironomids (non-biting midges), diatoms, and organic content (estimated by loss-on-ignition (LOI)). Subfossil chironomid analysis indicates that Stella Lake was characterized by a warm, middle Holocene, followed by a cool "Neoglacial" period, with the last two millennia characterized by a return to warmer conditions. Throughout the majority of the core the Stella Lake diatom-community composition is dominated by small, periphytic taxa which are suggestive of shallow, cool, alkaline, oligotrophic waters with extensive seasonal ice cover. A reconstruction of mean July air temperature (MJAT) was developed by applying a midge-based inference model for MJAT (two-component WA-PLS) consisting of 79 lakes and 54 midge taxa ( rjack2 = 0.55, RMSEP = 0.9°C). Comparison of the chironomid-inferred temperature record to existing regional paleoclimate reconstructions suggests that the midge-inferred temperatures correspond well to regional patterns. This multi-proxy record provides valuable insight into regional Holocene climate and environmental conditions by providing a quantitative reconstruction of peak Holocene warmth and aquatic ecosystem response to these changes in the Great Basin, a region projected to experience increased aridity and higher temperatures.
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NASA Astrophysics Data System (ADS)
Martínez-Fernández, Vanesa; Gonzalez del Tánago, Marta; García de Jalón, diego
2017-04-01
Riparian corridors result from active vegetation-fluvial interactions, which are highly dependent on flow regime conditions and sediment dynamics. Colonization, establishment and survival of species are constrained by fluvial processes which vary according to topographic and sedimentological complexity of the corridor. In order to manage these dynamic and complex riparian systems there is a need for practical tools based on conceptual models. The objective of this study was to apply the conceptual model of riparian corridors lateral zonation in response to the dominant fluvial processes established by Gurnell et al. (2015) and verify its usefulness as a tool for assessing the effect of flow regulation. Two gravel rivers have been selected for this purpose from the north of Spain, the Porma River regulated by Boñar large dam and the unregulated Curueño River. The historical series of flows and the aerial photographs of 1956 and 2011 on which the river corridor has been delimited have been analyzed and identified the permanent inundated zone (1) and four areas of riparian vegetation dominated respectively by fluvial disturbance with coarse sediment erosion and deposition (zone 2), fluvial disturbance with finer sediment deposition (zone 3), inundation (zone 4) and soil moisture regime (zone 5). Likewise, a two-dimensional hydraulic simulation was performed with avenues of different return periods and calculated the prevailing hydraulic conditions (depths, velocities and drag forces) to characterize each of the vegetation zones mentioned in both rivers. The results show that the most active zone 2 (fluvial disturbance dominated showing coarse sediment erosion and deposition) disappears due to the regulation of flows and vegetation encroachment, while the riparian corridor is dominated by the less active zone where the vegetation is maintained by the humidity of sporadic floods and underground runoff. Moreover, by means of the hydraulic simulation we have found a close relationship between the different areas of fluvial processes recognized through its vegetation and hydraulic conditions, which predicts the expected evolution of vegetation at different scenarios of regulation.
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Maastrichtian sedimentation and palaeoenvironments of the Saratov Volga region
NASA Astrophysics Data System (ADS)
Iakovishina, Elena; Blinova, Irina; Kopaevich, Ludmila; Vishnevskaya, Valentina; Bordunov, Sergey
2016-04-01
The Saratov Volga region was a shallow-marine epicontinental basin North-Eastern shelf zone of the Tethys Ocean in the Maastrichtian. The basis for the modeling conditions of sedimentation was the detection mineral composition of rocks, as well as the contents of various chemical elements in rocks in three reference sections: Lower Bannovka, quarries "Bolshevik" and "Kommunar". Rocks of quarries "Bolshevik" and "Kommunar" characterized by quartz-calcite mineral association. The main rock-forming mineral is calcite, small amounts in rocks contain quartz. Other mineral composition characterized section Lower Bannovka. At the base of the section in the rock marked the presence of the opal. The source of silica are radiolarians. Favorable conditions for the existence of which is cold deep water enriched with SiO2. Above the section marked authigenic glauconite, which are confined to zones of skip in sedimentation.Further up begins to dominate the accumulation of calcite with rich bentic foraminifera. Clay minerals in rocks of the section Lower Bannovka presented montmorillonite and illite. The relationship of chemical elements and their alkali modules allow to detail the conditions of sedimentation. The ratio of Fe/Mn in them varies from 44 to 5729. Higher values are characteristic of glauconite sandstones. Up the section marked decrease in the Ti/Zr, indicating that the increase in the distance from the source area to the place of deposition. The similarity values of the ratio Ti/Zr samples indicates a community source area. Sedimentation Model revealed the impact of the PreUral strait connecting Tethys and Paleoarktic. Through the Strait of deep cold water saturated with SiO2, penetrated into the of the Saratov Volga region, were accumulated clay. The closing of the PreUral Strait changed the conditions of sedimentation, the associated fall in sea levels due to global cooling reflected in the crisis of radiolarians, increase in the number of glauconite. Subsequent warming and warm-water transgression caused dominance of carbonates. The work was supported by grants 15-05-04990, 15-05-04700 Russian Foundation for Basic Research and IGCP project 609.
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Impact of Oil on Bacterial Community Structure in Bioturbated Sediments
Stauffert, Magalie; Cravo-Laureau, Cristiana; Jézéquel, Ronan; Barantal, Sandra; Cuny, Philippe; Gilbert, Franck; Cagnon, Christine; Militon, Cécile; Amouroux, David; Mahdaoui, Fatima; Bouyssiere, Brice; Stora, Georges; Merlin, François-Xavier; Duran, Robert
2013-01-01
Oil spills threaten coastlines where biological processes supply essential ecosystem services. Therefore, it is crucial to understand how oil influences the microbial communities in sediments that play key roles in ecosystem functioning. Ecosystems such as sediments are characterized by intensive bioturbation due to burrowing macrofauna that may modify the microbial metabolisms. It is thus essential to consider the bioturbation when determining the impact of oil on microbial communities. In this study, an experimental laboratory device maintaining pristine collected mudflat sediments in microcosms closer to true environmental conditions – with tidal cycles and natural seawater – was used to simulate an oil spill under bioturbation conditions. Different conditions were applied to the microcosms including an addition of: standardized oil (Blend Arabian Light crude oil, 25.6 mg.g−1 wet sediment), the common burrowing organism Hediste (Nereis) diversicolor and both the oil and H. diversicolor. The addition of H. diversicolor and its associated bioturbation did not affect the removal of petroleum hydrocarbons. After 270 days, 60% of hydrocarbons had been removed in all microcosms irrespective of the H. diversicolor addition. However, 16S-rRNA gene and 16S-cDNA T-RFLP and RT-PCR-amplicon libraries analysis showed an effect of the condition on the bacterial community structure, composition, and dynamics, supported by PerMANOVA analysis. The 16S-cDNA libraries from microcosms where H. diversicolor was added (oiled and un-oiled) showed a marked dominance of sequences related to Gammaproteobacteria. However, in the oiled-library sequences associated to Deltaproteobacteria and Bacteroidetes were also highly represented. The 16S-cDNA libraries from oiled-microcosms (with and without H. diversicolor addition) revealed two distinct microbial communities characterized by different phylotypes associated to known hydrocarbonoclastic bacteria and dominated by Gammaproteobacteria and Deltaproteobacteria. In the oiled-microcosms, the addition of H. diversicolor reduced the phylotype-richness, sequences associated to Actinobacteria, Firmicutes and Plantomycetes were not detected. These observations highlight the influence of the bioturbation on the bacterial community structure without affecting the biodegradation capacities. PMID:23762350
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Determination of uromodulin in human urine: influence of storage and processing.
Youhanna, Sonia; Weber, Julien; Beaujean, Viviane; Glaudemans, Bob; Sobek, Jens; Devuyst, Olivier
2014-01-01
Uromodulin (Tamm-Horsfall protein) is the most abundant protein excreted in the urine under physiological conditions. It is exclusively produced in the kidney and secreted into the urine via proteolytic cleavage. The involvement of UMOD, the gene that encodes uromodulin, in rare autosomal dominant diseases, and its robust genome-wide association with the risk of chronic kidney disease suggest that the level of uromodulin in urine could represent a critical biomarker for kidney function. The structure of uromodulin is complex, with multiple disulfide bonds and typical domains of extracellular proteins. Thus far, the conditions influencing stability and measurement of uromodulin in human urine have not been systematically investigated, giving inconsistent results. In this study, we used a robust, in-house ELISA to characterize the conditions of sampling and storage necessary to provide a faithful dosage of uromodulin in the urine. The levels of uromodulin in human urine were significantly affected by centrifugation and vortexing, as well as by the conditions and duration of storage. These results validate a simple, low-cost ELISA and document the optimal conditions of processing and storage for measuring uromodulin in human urine.
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NASA Astrophysics Data System (ADS)
Otmane, Khadija; Errami, Ezzoura; Olivier, Philippe; Berger, Julien; Triantafyllou, Antoine; Ennih, Nasser
2018-03-01
Located in the Imiter Inlier (Eastern Saghro, Anti-Atlas, Morocco), Ediacaran volcanic dykes have been studied for their petrofabric using Anisotropy of Magnetic Susceptibility (AMS) technique. Four dykes, namely TF, TD, FF and FE show andesitic compositions and are considered to belong to the same dyke swarm. They are oriented respectively N25E, N40E, N50E, and N10E and have been emplaced during a first tectonic event. The dyke FW, oriented N90E displays a composition of alkali basalt and its emplacement is attributed to a subsequent tectonic event. These rocks are propylitized under greenschist facies conditions forming a secondary paragenesis constituted by calcite, chlorite, epidote and sericite. The dykes TF, TD, FF and FE are sub-volcanic calc-alkaline, typical of post-collisional basalts/andesites, belonging to plate margin andesites. The FW dyke shows a within-plate basalt signature; alkaline affinity reflecting a different petrogenetic process. The thermomagnetic analyses show a dominantly ferromagnetic behaviour in the TF dyke core carried by single domain Ti-poor magnetite, maghemite and pyrrhotite. The dominantly paramagnetic susceptibilities in TF dyke rims and TD, FE, FF and FW dykes are controlled by ilmenite, amphibole, pyroxene and chlorite. The magnetic fabrics of the Imider dykes, determined by our AMS study, allows us to reconstitute the tectonic conditions which prevailed during the emplacement of these two generations of volcanic dykes. The first tectonic event was characterized by a roughly NE-SW compression and the second tectonic event is characterized by an E-W shortening followed by a relaxation recording the end of the Pan-African orogeny in the eastern Anti-Atlas.
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Establishment and characterization of a novel murine model of pancreatic cancer cachexia
Michaelis, Katherine A.; Zhu, Xinxia; Burfeind, Kevin G.; Krasnow, Stephanie M.; Levasseur, Peter R.; Morgan, Terry K.
2017-01-01
Abstract Background Cachexia is a complex metabolic and behavioural syndrome lacking effective therapies. Pancreatic ductal adenocarcinoma (PDAC) is one of the most important conditions associated with cachexia, with >80% of PDAC patients suffering from the condition. To establish the cardinal features of a murine model of PDAC‐associated cachexia, we characterized the effects of implanting a pancreatic tumour cell line from a syngeneic C57BL/6 KRASG12D P53R172H Pdx‐Cre+/+ (KPC) mouse. Methods Male and female C57BL/6 mice were inoculated subcutaneously, intraperitoneally, or orthotopically with KPC tumour cells. We performed rigorous phenotypic, metabolic, and behavioural analysis of animals over the course of tumour development. Results All routes of administration produced rapidly growing tumours histologically consistent with moderate to poorly differentiated PDAC. The phenotype of this model was dependent on route of administration, with orthotopic and intraperitoneal implantation inducing more severe cachexia than subcutaneous implantation. KPC tumour growth decreased food intake, decreased adiposity and lean body mass, and decreased locomotor activity. Muscle catabolism was observed in both skeletal and cardiac muscles, but the dominant catabolic pathway differed between these tissues. The wasting syndrome in this model was accompanied by hypothalamic inflammation, progressively decreasing brown and white adipose tissue uncoupling protein 1 (Ucp1) expression, and increased peripheral inflammation. Haematological and endocrine abnormalities included neutrophil‐dominant leukocytosis and anaemia, and decreased serum testosterone. Conclusions Syngeneic KPC allografts are a robust model for studying cachexia, which recapitulate key features of the PDAC disease process and induce a wide array of cachexia manifestations. This model is therefore ideally suited for future studies exploring the physiological systems involved in cachexia and for preclinical studies of novel therapies. PMID:28730707
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Distinct molecular underpinnings of Drosophila olfactory trace conditioning
Shuai, Yichun; Hu, Ying; Qin, Hongtao; Campbell, Robert A. A.; Zhong, Yi
2011-01-01
Trace conditioning is valued as a simple experimental model to assess how the brain associates events that are discrete in time. Here, we adapted an olfactory trace conditioning procedure in Drosophila melanogaster by training fruit flies to avoid an odor that is followed by foot shock many seconds later. The molecular underpinnings of the learning are distinct from the well-characterized simultaneous conditioning, where odor and punishment temporally overlap. First, Rutabaga adenylyl cyclase (Rut-AC), a putative molecular coincidence detector vital for simultaneous conditioning, is dispensable in trace conditioning. Second, dominant-negative Rac expression, thought to sustain early labile memory, significantly enhances learning of trace conditioning, but leaves simultaneous conditioning unaffected. We further show that targeting Rac inhibition to the mushroom body (MB) but not the antennal lobe (AL) suffices to achieve the enhancement effect. Moreover, the absence of trace conditioning learning in D1 dopamine receptor mutants is rescued by restoration of expression specifically in the adult MB. These results suggest the MB as a crucial neuroanatomical locus for trace conditioning, which may harbor a Rac activity-sensitive olfactory “sensory buffer” that later converges with the punishment signal carried by dopamine signaling. The distinct molecular signature of trace conditioning revealed here shall contribute to the understanding of how the brain overcomes a temporal gap in potentially related events. PMID:22123966
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NASA Astrophysics Data System (ADS)
Homuth, S.; Götz, A. E.; Sass, I.
2015-06-01
The Upper Jurassic carbonates of the southern German Molasse Basin are the target of numerous geothermal combined heat and power production projects since the year 2000. A production-orientated reservoir characterization is therefore of high economic interest. Outcrop analogue studies enable reservoir property prediction by determination and correlation of lithofacies-related thermo- and petrophysical parameters. A thermofacies classification of the carbonate formations serves to identify heterogeneities and production zones. The hydraulic conductivity is mainly controlled by tectonic structures and karstification, whilst the type and grade of karstification is facies related. The rock permeability has only a minor effect on the reservoir's sustainability. Physical parameters determined on oven-dried samples have to be corrected, applying reservoir transfer models to water-saturated reservoir conditions. To validate these calculated parameters, a Thermo-Triaxial-Cell simulating the temperature and pressure conditions of the reservoir is used and calorimetric and thermal conductivity measurements under elevated temperature conditions are performed. Additionally, core and cutting material from a 1600 m deep research drilling and a 4850 m (total vertical depth, measured depth: 6020 m) deep well is used to validate the reservoir property predictions. Under reservoir conditions a decrease in permeability of 2-3 magnitudes is observed due to the thermal expansion of the rock matrix. For tight carbonates the matrix permeability is temperature-controlled; the thermophysical matrix parameters are density-controlled. Density increases typically with depth and especially with higher dolomite content. Therefore, thermal conductivity increases; however the dominant factor temperature also decreases the thermal conductivity. Specific heat capacity typically increases with increasing depth and temperature. The lithofacies-related characterization and prediction of reservoir properties based on outcrop and drilling data demonstrates that this approach is a powerful tool for exploration and operation of geothermal reservoirs.
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Karlqvist, Lena K; Härenstam, Annika; Leijon, Ola; Schéele, Patrik
2003-10-01
This study attempted to identify work and leisure-time conditions and life-style factors associated with excess metabolic levels (metabolic demands exceeding one-third of a person's aerobic capacity) at work among men and women. The study focused upon psychological, ergonomic, and physically loading factors and chemical and physical environmental conditions. Data were obtained through self-reports, interviews, workplace analyses, technical measurements, and observations. Gender-specific calculations were used in univariate analyses and in stepwise logistic regression models for excess metabolic level. Twenty-seven percent of the men and twenty-two percent of the women worked at an excess metabolic level during their workday. Awkward work postures, heavy manual materials handling, high circulatory strain, chemical exposures, noise levels, much routine work, and many obstacles to job performance characterized their work conditions. The women had low skill discretion and more often atypical workhours, while the men showed high circulatory strain during leisure-time activities. Important negative life-style factors were a high consumption of alcohol for the men and a high body mass index and no or little regular physical exercise for the women. Metabolic demands in worklife today remain high. The women who exceeded the recommended metabolic level at work in this study were characterized by low pay, poor health, and children at home, in addition to high physical load and psychosocial strain at work. These characteristics indicate a group with few possibilities to leave a hazardous job for a less physically demanding one. The men who worked at an excess metabolic level seemed to be characterized more by a life-style common in some male-dominated work cultures with monotonous work.
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Lahr, Juliana; Pereira, Marcelo Pinto; Pelicioni, Paulo Henrique Silva; De Morais, Luana Carolina; Gobbi, Lilian Teresa Bucken
2015-12-01
This study assesses the association between disease onset side (dominant or non-dominant) and vision on postural control of Parkinson's disease patients. Patient volunteers composed two groups, according to the onset side affected: Dominant group (n=9; M age=66.1 yr., SD=7.2; 6 women, 3 men) and Non-dominant group (n=9; M age=67.4 yr., SD=6.4; 6 women, 3 men). The groups' postural control was assessed by posturography during quiet upright stance in two conditions, Eyes open and Eyes closed. Two-way analyses of variance (ANOVAs; group×condition) with repeated measures for the second factor assessed the differences associated with affected hemibody and vision on postural control. Analyses indicated that patients with the dominant side affected also presented significantly greater variation in center of pressure than those with the non-dominant side affected, mainly in the Eyes closed condition. The results demonstrate a higher reliance on vision in the dominant side, possibly to compensate somatosensory system impairments. These results also highlight the importance of analyzing the hemibody affected by the disease when postural control is assessed in this population.
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Semantic congruency and the (reversed) Colavita effect in children and adults.
Wille, Claudia; Ebersbach, Mirjam
2016-01-01
When presented with auditory, visual, or bimodal audiovisual stimuli in a discrimination task, adults tend to ignore the auditory component in bimodal stimuli and respond to the visual component only (i.e., Colavita visual dominance effect). The same is true for older children, whereas young children are dominated by the auditory component of bimodal audiovisual stimuli. This suggests a change of sensory dominance during childhood. The aim of the current study was to investigate, in three experimental conditions, whether children and adults show sensory dominance when presented with complex semantic stimuli and whether this dominance can be modulated by stimulus characteristics such as semantic (in)congruency, frequency of bimodal trials, and color information. Semantic (in)congruency did not affect the magnitude of the auditory dominance effect in 6-year-olds or the visual dominance effect in adults, but it was a modulating factor of the visual dominance in 9-year-olds (Conditions 1 and 2). Furthermore, the absence of color information (Condition 3) did not affect auditory dominance in 6-year-olds and hardly affected visual dominance in adults, whereas the visual dominance in 9-year-olds disappeared. Our results suggest that (a) sensory dominance in children and adults is not restricted to simple lights and sounds, as used in previous research, but can be extended to semantically meaningful stimuli and that (b) sensory dominance is more robust in 6-year-olds and adults than in 9-year-olds, implying a transitional stage around this age. Copyright © 2015 Elsevier Inc. All rights reserved.
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Green, Stefan J.; Prakash, Om; Jasrotia, Puja; Overholt, Will A.; Cardenas, Erick; Hubbard, Daniela; Tiedje, James M.; Watson, David B.; Schadt, Christopher W.; Brooks, Scott C.
2012-01-01
The effect of long-term mixed-waste contamination, particularly uranium and nitrate, on the microbial community in the terrestrial subsurface was investigated at the field scale at the Oak Ridge Integrated Field Research Challenge (ORIFRC) site in Oak Ridge, TN. The abundance, community composition, and distribution of groundwater microorganisms were examined across the site during two seasonal sampling events. At representative locations, subsurface sediment was also examined from two boreholes, one sampled from the most heavily contaminated area of the site and another from an area with low contamination. A suite of DNA- and RNA-based molecular tools were employed for community characterization, including quantitative PCR of rRNA and nitrite reductase genes, community composition fingerprinting analysis, and high-throughput pyrotag sequencing of rRNA genes. The results demonstrate that pH is a major driver of the subsurface microbial community structure and that denitrifying bacteria from the genus Rhodanobacter (class Gammaproteobacteria) dominate at low pH. The relative abundance of bacteria from this genus was positively correlated with lower-pH conditions, and these bacteria were abundant and active in the most highly contaminated areas. Other factors, such as the concentration of nitrogen species, oxygen level, and sampling season, did not appear to strongly influence the distribution of Rhodanobacter bacteria. The results indicate that these organisms are acid-tolerant denitrifiers, well suited to the acidic, nitrate-rich subsurface conditions, and pH is confirmed as a dominant driver of bacterial community structure in this contaminated subsurface environment. PMID:22179233
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Domínguez-Sáez, Aida; Viana, Mar; Barrios, Carmen C; Rubio, Jose R; Amato, Fulvio; Pujadas, Manuel; Querol, Xavier
2012-10-16
A novel on-board system was tested to characterize size-resolved particle number emission patterns under real-world driving conditions, running in a EURO4 diesel vehicle and in a typical urban circuit in Madrid (Spain). Emission profiles were determined as a function of driving conditions. Source apportionment by Positive Matrix Factorization (PMF) was carried out to interpret the real-world driving conditions. Three emission patterns were identified: (F1) cruise conditions, with medium-high speeds, contributing in this circuit with 60% of total particle number and a particle size distribution dominated by particles >52 nm and around 60 nm; (F2) transient conditions, stop-and-go conditions at medium-high speed, contributing with 25% of the particle number and mainly emitting particles in the nucleation mode; and (F3) creep-idle conditions, representing traffic congestion and frequent idling periods, contributing with 14% to the total particle number and with particles in the nucleation mode (<29.4 nm) and around 98 nm. We suggest potential approaches to reduce particle number emissions depending on particle size and driving conditions. Differences between real-world emission patterns and regulatory cycles (NEDC) are also presented, which evidence that detecting particle number emissions <40 nm is only possible under real-world driving conditions.
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A methodology for investigation of the seasonal evolution in proglacial hydrograph form
NASA Astrophysics Data System (ADS)
Hannah, David M.; Gurnell, Angela M.; McGregor, Glenn R.
1999-11-01
This paper advances an objective method of diurnal hydrograph classification as an aid to exploring changes in the hydrological functioning of glacierized catchments over the ablation season. The temporal sequencing of different hydrograph classes allows identification of seasonal evolution in hydrograph form and also assists delimitation of hydrologically-meaningful time periods of similar diurnal discharge response. The effectiveness of this approach is illustrated by applying it to two contrasting summer discharge records for a small cirque basin. By comparing the results with patterns of surface energy receipt and glacier ablation, the seasonally transient relative influences of: (i) surface meltwater production and (ii) meltwater routing and storage conditions within the intervening glacier drainage system in determining runoff are elucidated. The method successfully characterizes distinct seasonal-scale changes in the diurnal outflow hydrograph during the ablation-dominated 1995 melt season but is also able to reveal underlying trends and short-term fluctuations in the precipitation-dominated, poorly ablation-regulated 1996 melt season. The limitations and benefits of this hydrograph classification technique are evaluated.
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Methane-producing microbial community in a coal bed of the Illinois basin.
Strapoc, Dariusz; Picardal, Flynn W; Turich, Courtney; Schaperdoth, Irene; Macalady, Jennifer L; Lipp, Julius S; Lin, Yu-Shih; Ertefai, Tobias F; Schubotz, Florence; Hinrichs, Kai-Uwe; Mastalerz, Maria; Schimmelmann, Arndt
2008-04-01
A series of molecular and geochemical studies were performed to study microbial, coal bed methane formation in the eastern Illinois Basin. Results suggest that organic matter is biodegraded to simple molecules, such as H(2) and CO(2), which fuel methanogenesis and the generation of large coal bed methane reserves. Small-subunit rRNA analysis of both the in situ microbial community and highly purified, methanogenic enrichments indicated that Methanocorpusculum is the dominant genus. Additionally, we characterized this methanogenic microorganism using scanning electron microscopy and distribution of intact polar cell membrane lipids. Phylogenetic studies of coal water samples helped us develop a model of methanogenic biodegradation of macromolecular coal and coal-derived oil by a complex microbial community. Based on enrichments, phylogenetic analyses, and calculated free energies at in situ subsurface conditions for relevant metabolisms (H(2)-utilizing methanogenesis, acetoclastic methanogenesis, and homoacetogenesis), H(2)-utilizing methanogenesis appears to be the dominant terminal process of biodegradation of coal organic matter at this location.
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Duan, Liang; Song, Yonghui; Xia, Siqing; Hermanowicz, Slawomir W
2013-12-01
This study investigated the nitrifying bacterial community in membrane bioreactor (MBR) at short solids retention times (SRTs) of 3, 5 and 10 days. The denaturing gradient gel electrophoresis results showed that different types of ammonia-oxidizing bacteria (AOB) can survive at different operating conditions. The diversity of AOB increased as the SRT increased. The real-time PCR results showed that the amoA gene concentrations were similar when MBRs were stabilized, and it can be a good indicator of stabilized nitrification. The results of clone library indicated that Nitrosomonas was the dominant group of AOB in three reactors. The microarray results showed that Nitrospira was the dominant group of nitrite-oxidizing bacteria (NOB) in the system. All groups of AOB and NOB except Nitrosolobus and Nitrococcus were found in MBR, indicated that the nitrifying bacterial community structure was more complicated. The combination of some molecular tools can provide more information of microbial communities. Copyright © 2013 Elsevier Ltd. All rights reserved.
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Albedo of the south pole on Mars determined by topographic forcing of atmosphere dynamics
Colaprete, A.; Barnes, J.R.; Haberle, R.M.; Hollingsworth, J.L.; Kieffer, H.H.; Titus, T.N.
2005-01-01
The nature of the martian south polar cap has remained enigmatic since the first spacecraft observations. In particular, the presence of a perennial carbon dioxide ice cap, the formation of a vast area of black 'slab ice' known as the Cryptic region and the asymmetric springtime retreat of the cap have eluded explanation. Here we present observations and climate modelling that indicate the south pole of Mars is characterized by two distinct regional climates that are the result of dynamical forcing by the largest southern impact basins, Argyre and Hellas. The style of surface frost deposition is controlled by these regional climates. In the cold and stormy conditions that exist poleward of 60?? S and extend 180?? in longitude west from the Mountains of Mitchel (???30?? W), surface frost accumulation is dominated by precipitation. In the opposite hemisphere, the polar atmosphere is relatively warm and clear and frost accumulation is dominated by direct vapour deposition. It is the differences in these deposition styles that determine the cap albedo.
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Smith, Ida M.; Baker, Adam; Christensen, Jeffrey E.; Boekhout, Teun; Frøkiær, Hanne; Arneborg, Nils; Jespersen, Lene
2016-01-01
Interactions between members of the intestinal microbiota and the mucosal immune system can significantly impact human health, and in this context, fungi and food-related yeasts are known to influence intestinal inflammation through direct interactions with specialized immune cells in vivo. The aim of the present study was to characterize the immune modulating properties of the food-related yeast Kluyveromyces marxianus in terms of adaptive immune responses indicating inflammation versus tolerance and to explore the mechanisms behind the observed responses. Benchmarking against a Saccharomyces boulardii strain with probiotic effects documented in clinical trials, we evaluated the ability of K. marxianus to modulate human dendritic cell (DC) function in vitro. Further, we assessed yeast induced DC modulation of naive T cells toward effector responses dominated by secretion of IFNγ and IL-17 versus induction of a Treg response characterized by robust IL-10 secretion. In addition, we blocked relevant DC surface receptors and investigated the stimulating properties of β-glucan containing yeast cell wall extracts. K. marxianus and S. boulardii induced distinct levels of DC cytokine secretion, primarily driven by Dectin-1 recognition of β-glucan components in their cell walls. Upon co-incubation of yeast exposed DCs and naive T cells, S. boulardii induced a potent IFNγ response indicating TH1 mobilization. In contrast, K. marxianus induced a response dominated by Foxp3+ Treg cells, a characteristic that may benefit human health in conditions characterized by excessive inflammation and positions K. marxianus as a strong candidate for further development as a novel yeast probiotic. PMID:27898740
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Smith, Ida M; Baker, Adam; Christensen, Jeffrey E; Boekhout, Teun; Frøkiær, Hanne; Arneborg, Nils; Jespersen, Lene
2016-01-01
Interactions between members of the intestinal microbiota and the mucosal immune system can significantly impact human health, and in this context, fungi and food-related yeasts are known to influence intestinal inflammation through direct interactions with specialized immune cells in vivo. The aim of the present study was to characterize the immune modulating properties of the food-related yeast Kluyveromyces marxianus in terms of adaptive immune responses indicating inflammation versus tolerance and to explore the mechanisms behind the observed responses. Benchmarking against a Saccharomyces boulardii strain with probiotic effects documented in clinical trials, we evaluated the ability of K. marxianus to modulate human dendritic cell (DC) function in vitro. Further, we assessed yeast induced DC modulation of naive T cells toward effector responses dominated by secretion of IFNγ and IL-17 versus induction of a Treg response characterized by robust IL-10 secretion. In addition, we blocked relevant DC surface receptors and investigated the stimulating properties of β-glucan containing yeast cell wall extracts. K. marxianus and S. boulardii induced distinct levels of DC cytokine secretion, primarily driven by Dectin-1 recognition of β-glucan components in their cell walls. Upon co-incubation of yeast exposed DCs and naive T cells, S. boulardii induced a potent IFNγ response indicating TH1 mobilization. In contrast, K. marxianus induced a response dominated by Foxp3+ Treg cells, a characteristic that may benefit human health in conditions characterized by excessive inflammation and positions K. marxianus as a strong candidate for further development as a novel yeast probiotic.
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Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations.
Owczarzy, Richard; Moreira, Bernardo G; You, Yong; Behlke, Mark A; Walder, Joseph A
2008-05-13
Accurate predictions of DNA stability in physiological and enzyme buffers are important for the design of many biological and biochemical assays. We therefore investigated the effects of magnesium, potassium, sodium, Tris ions, and deoxynucleoside triphosphates on melting profiles of duplex DNA oligomers and collected large melting data sets. An empirical correction function was developed that predicts melting temperatures, transition enthalpies, entropies, and free energies in buffers containing magnesium and monovalent cations. The new correction function significantly improves the accuracy of predictions and accounts for ion concentration, G-C base pair content, and length of the oligonucleotides. The competitive effects of potassium and magnesium ions were characterized. If the concentration ratio of [Mg (2+)] (0.5)/[Mon (+)] is less than 0.22 M (-1/2), monovalent ions (K (+), Na (+)) are dominant. Effects of magnesium ions dominate and determine duplex stability at higher ratios. Typical reaction conditions for PCR and DNA sequencing (1.5-5 mM magnesium and 20-100 mM monovalent cations) fall within this range. Conditions were identified where monovalent and divalent cations compete and their stability effects are more complex. When duplexes denature, some of the Mg (2+) ions associated with the DNA are released. The number of released magnesium ions per phosphate charge is sequence dependent and decreases surprisingly with increasing oligonucleotide length.
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Liu, Jingjing; Sun, Faqian; Wang, Liang; Ju, Xi; Wu, Weixiang; Chen, Yingxu
2014-01-01
Methane can be used as an alternative carbon source in biological denitrification because it is nontoxic, widely available and relatively inexpensive. A microbial consortium involved in methane oxidation coupled to denitrification (MOD) was enriched with nitrite and nitrate as electron acceptors under micro-aerobic conditions. The 16S rRNA gene combined with pmoA phylogeny of methanotrophs and nirK phylogeny of denitrifiers were analysed to reveal the dominant microbial populations and functional microorganisms. Real-time quantitative polymerase chain reaction results showed high numbers of methanotrophs and denitrifiers in the enriched consortium. The 16S rRNA gene clone library revealed that Methylococcaceae and Methylophilaceae were the dominant populations in the MOD ecosystem. Phylogenetic analyses of pmoA gene clone libraries indicated that all methanotrophs belonged to Methylococcaceae, a type I methanotroph employing the ribulose monophosphate pathway for methane oxidation. Methylotrophic denitrifiers of the Methylophilaceae that can utilize organic intermediates (i.e. formaldehyde, citrate and acetate) released from the methanotrophs played a vital role in aerobic denitrification. This study is the first report to confirm micro-aerobic denitrification and to make phylogenetic and functional assignments for some members of the microbial assemblages involved in MOD. © 2013 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.
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Sea-Floor Character and Sedimentary Processes in the Vicinity of Woods Hole, Massachusetts
Poppe, Lawrence J.; McMullen, Katherine Y.; Foster, David S.; Blackwood, Dann S.; Williams, S. Jeffress; Ackerman, Seth D.; Barnum, Steven R.; Brennan, Rick T.
2008-01-01
Continuous-coverage multibeam bathymetric models and sidescan-sonar imagery have been verified with high-resolution seismic-reflection profiles, sediment sampling, and bottom photography. Together these data layers provide detailed base maps that yield topographic, compositional, and environmental perspectives of the sea floor in the vicinity of Woods Hole, an important harbor and major passage between the Elizabeth Islands and Cape Cod, Massachusetts. Tidally dominated high-energy environments within Woods Hole have prevented deposition of Holocene marine sediments, exposed underlying glacial drift of the Buzzards Bay moraine, and winnowed finer grained sediments, leaving lag deposits of boulders and gravel. These conditions have also enlarged and preserved depressions in the moraine surface that were originally kettle holes and formed ebb-tidal deltas at the entrances to passages. Fields of transverse and barchanoid sand waves dominate across the southern part of the study area in Vineyard Sound, where benthic environments are characterized by processes associated with coarse-bedload transport. Transverse sand waves dominate near shoals where sediment supply is greater and have asymmetries that indicate that the shoals are shaped and maintained by clockwise gyres of net sediment transport. Barchanoid sand waves, which are most common where Holocene sediments are thinner, commonly align into elongate fields that have smaller isolated waves concentrated at the eastern ends and that progressively widen and have waveforms that increase in amplitude, wavelength, and complexity westward. The northern, protected parts of the Little and Inner Harbors are characterized by muddy sediment and processes associated with deposition. A pockmark field in Little Harbor and the muddy, organic-rich sediments that form a scarp along the edge of Parker Flat are evidence for the presence of submerged marsh deposits formed during the Holocene rise in sea level.
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Mirus, B.B.; Ebel, B.A.; Heppner, C.S.; Loague, K.
2011-01-01
Concept development simulation with distributed, physics-based models provides a quantitative approach for investigating runoff generation processes across environmental conditions. Disparities within data sets employed to design and parameterize boundary value problems used in heuristic simulation inevitably introduce various levels of bias. The objective was to evaluate the impact of boundary value problem complexity on process representation for different runoff generation mechanisms. The comprehensive physics-based hydrologic response model InHM has been employed to generate base case simulations for four well-characterized catchments. The C3 and CB catchments are located within steep, forested environments dominated by subsurface stormflow; the TW and R5 catchments are located in gently sloping rangeland environments dominated by Dunne and Horton overland flows. Observational details are well captured within all four of the base case simulations, but the characterization of soil depth, permeability, rainfall intensity, and evapotranspiration differs for each. These differences are investigated through the conversion of each base case into a reduced case scenario, all sharing the same level of complexity. Evaluation of how individual boundary value problem characteristics impact simulated runoff generation processes is facilitated by quantitative analysis of integrated and distributed responses at high spatial and temporal resolution. Generally, the base case reduction causes moderate changes in discharge and runoff patterns, with the dominant process remaining unchanged. Moderate differences between the base and reduced cases highlight the importance of detailed field observations for parameterizing and evaluating physics-based models. Overall, similarities between the base and reduced cases indicate that the simpler boundary value problems may be useful for concept development simulation to investigate fundamental controls on the spectrum of runoff generation mechanisms. Copyright 2011 by the American Geophysical Union.
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NASA Astrophysics Data System (ADS)
Szyja, Michelle; Büdel, Burkhard; Colesie, Claudia
2018-04-01
Ecophysiological characterizations of photoautotrophic communities are not only necessary to identify the response of carbon fixation related to different climatic factors, but also to evaluate risks connected to changing environments. In biological soil crusts (BSCs), the description of ecophysiological features is difficult, due to the high variability in taxonomic composition and variable methodologies applied. Especially for BSCs in early successional stages, the available datasets are rare or focused on individual constituents, although these crusts may represent the only photoautotrophic component in many heavily disturbed ruderal areas, such as parking lots or building areas with increasing surface area worldwide. We analyzed the response of photosynthesis and respiration to changing BSC water contents (WCs), temperature and light in two early successional BSCs. We investigated whether the response of these parameters was different between intact BSC and the isolated dominating components. BSCs dominated by the cyanobacterium Nostoc commune and dominated by the green alga Zygogonium ericetorum were examined. A major divergence between the two BSCs was their absolute carbon fixation rate on a chlorophyll basis, which was significantly higher for the cyanobacterial crust. Nevertheless, independent of species composition, both crust types and their isolated organisms had convergent features such as high light acclimatization and a minor and very late-occurring depression in carbon uptake at water suprasaturation. This particular setup of ecophysiological features may enable these communities to cope with a high variety of climatic stresses and may therefore be a reason for their success in heavily disturbed areas with ongoing human impact. However, the shape of the response was different for intact BSC compared to separated organisms, especially in absolute net photosynthesis (NP) rates. This emphasizes the importance of measuring intact BSCs under natural conditions for collecting reliable data for meaningful analysis of BSC ecosystem services.
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Gkourogianni, Alexandra; Andrew, Melissa; Tyzinski, Leah; Crocker, Melissa; Douglas, Jessica; Dunbar, Nancy; Fairchild, Jan; Funari, Mariana F. A.; Heath, Karen E.; Jorge, Alexander A. L.; Kurtzman, Tracey; LaFranchi, Stephen; Lalani, Seema; Lebl, Jan; Lin, Yuezhen; Los, Evan; Newbern, Dorothee; Nowak, Catherine; Olson, Micah; Popovic, Jadranka; Průhová, Štěpánka; Elblova, Lenka; Quintos, Jose Bernardo; Segerlund, Emma; Sentchordi, Lucia; Shinawi, Marwan; Stattin, Eva-Lena; Swartz, Jonathan; del Angel, Ariadna González; Cuéllar, Sinhué Diaz; Hosono, Hidekazu; Sanchez-Lara, Pedro A.; Hwa, Vivian; Baron, Jeffrey; Dauber, Andrew
2017-01-01
Context: Heterozygous mutations in the aggrecan gene (ACAN) cause autosomal dominant short stature with accelerated skeletal maturation. Objective: We sought to characterize the phenotypic spectrum and response to growth-promoting therapies. Patients and Methods: One hundred three individuals (57 females, 46 males) from 20 families with autosomal dominant short stature and heterozygous ACAN mutations were identified and confirmed using whole-exome sequencing, targeted next-generation sequencing, and/or Sanger sequencing. Clinical information was collected from the medical records. Results: Identified ACAN variants showed perfect cosegregation with phenotype. Adult individuals had mildly disproportionate short stature [median height, −2.8 standard deviation score (SDS); range, −5.9 to −0.9] and a history of early growth cessation. The condition was frequently associated with early-onset osteoarthritis (12 families) and intervertebral disc disease (9 families). No apparent genotype–phenotype correlation was found between the type of ACAN mutation and the presence of joint complaints. Childhood height was less affected (median height, −2.0 SDS; range, −4.2 to −0.6). Most children with ACAN mutations had advanced bone age (bone age − chronologic age; median, +1.3 years; range, +0.0 to +3.7 years). Nineteen individuals had received growth hormone therapy with some evidence of increased growth velocity. Conclusions: Heterozygous ACAN mutations result in a phenotypic spectrum ranging from mild and proportionate short stature to a mild skeletal dysplasia with disproportionate short stature and brachydactyly. Many affected individuals developed early-onset osteoarthritis and degenerative disc disease, suggesting dysfunction of the articular cartilage and intervertebral disc cartilage. Additional studies are needed to determine the optimal treatment strategy for these patients. PMID:27870580
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Shaughnessy, A.T.; Holland, A.F.
1989-12-01
The report summarizes data from the first three years of a long-term monitoring program to establish baseline conditions in benthic communities on the upper Potomac River. Major sources of variation were considered in an effort to characterize the effect of two power plants on distribution and abundance of the benthos. Distinct changes occurred in benthic communities in the vicinity of power plant discharges. These included decreased abundances of dominant species and reduced occurrences of rare species. Impacts associated with power plants were most severe during summer months and during low flow years.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Shaughnessy, A.T.; Holland, A.F.
1989-12-01
The report summarizes data from the first three years of a long-term monitoring program to establish baseline conditions in benthic communities on the upper Potomac River. Major sources of variation were considered in an effort to characterize the effect of two power plants on distribution and abundance of the benthos. Distinct changes occurred in benthic communities in the vicinity of power plant discharges. These included decreased abundances of dominant species and reduced occurrences of rare species. Impacts associated with power plants were most severe during summer months and during low flow years.
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Target-site resistance to neonicotinoids.
Crossthwaite, Andrew J; Rendine, Stefano; Stenta, Marco; Slater, Russell
2014-10-01
Neonicotinoid insecticides selectively target the invertebrate nicotinic acetylcholine receptor and disrupt excitatory cholinergic neurotransmission. First launched over 20 years ago, their broad pest spectrum, variety of application methods and relatively low risk to nontarget organisms have resulted in this class dominating the insecticide market with global annual sales in excess of $3.5 bn. This remarkable commercial success brings with it conditions in the field that favour selection of resistant phenotypes. A number of important pest species have been identified with mutations at the nicotinic acetylcholine receptor associated with insensitivity to neonicotinoids. The detailed characterization of these mutations has facilitated a greater understanding of the invertebrate nicotinic acetylcholine receptor.
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Amplitude and phase fluctuations of Van der Pol oscillator under external random forcing
NASA Astrophysics Data System (ADS)
Singh, Aman K.; Yadava, R. D. S.
2018-05-01
The paper presents an analytical study of noise in Van der Pol oscillator output subjected to an external force noise assumed to be characterized by delta function (white noise). The external fluctuations are assumed to be small in comparison to the average response of the noise free system. The autocorrelation function and power spectrum are calculated under the condition of weak nonlinearity. The latter ensures limit cycle oscillations. The total spectral power density is dominated by the contributions from the phase fluctuations. The amplitude fluctuations are at least two orders of magnitude smaller. The analysis is shown to be useful to interpretation microcantilever based biosensing data.
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Dong, Yang; He, Honghui; He, Chao; Zhou, Jialing; Zeng, Nan; Ma, Hui
2016-08-10
Silk fibers suffer from microstructural changes due to various external environmental conditions including daily washings. In this paper, we take the backscattering Mueller matrix images of silk samples for non-destructive and real-time quantitative characterization of the wavelength-scale microstructure and examination of the effects of washing by different detergents. The 2D images of the 16 Mueller matrix elements are reduced to the frequency distribution histograms (FDHs) whose central moments reveal the dominant structural features of the silk fibers. A group of new parameters are also proposed to characterize the wavelength-scale microstructural changes of the silk samples during the washing processes. Monte Carlo (MC) simulations are carried out to better understand how the Mueller matrix parameters are related to the wavelength-scale microstructure of silk fibers. The good agreement between experiments and simulations indicates that the Mueller matrix polarimetry and FDH based parameters can be used to quantitatively detect the wavelength-scale microstructural features of silk fibers. Mueller matrix polarimetry may be used as a powerful tool for non-destructive and in situ characterization of the wavelength-scale microstructures of silk based materials.
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Dong, Yang; He, Honghui; He, Chao; Zhou, Jialing; Zeng, Nan; Ma, Hui
2016-01-01
Silk fibers suffer from microstructural changes due to various external environmental conditions including daily washings. In this paper, we take the backscattering Mueller matrix images of silk samples for non-destructive and real-time quantitative characterization of the wavelength-scale microstructure and examination of the effects of washing by different detergents. The 2D images of the 16 Mueller matrix elements are reduced to the frequency distribution histograms (FDHs) whose central moments reveal the dominant structural features of the silk fibers. A group of new parameters are also proposed to characterize the wavelength-scale microstructural changes of the silk samples during the washing processes. Monte Carlo (MC) simulations are carried out to better understand how the Mueller matrix parameters are related to the wavelength-scale microstructure of silk fibers. The good agreement between experiments and simulations indicates that the Mueller matrix polarimetry and FDH based parameters can be used to quantitatively detect the wavelength-scale microstructural features of silk fibers. Mueller matrix polarimetry may be used as a powerful tool for non-destructive and in situ characterization of the wavelength-scale microstructures of silk based materials. PMID:27517919
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Spaceborne radar interferometry for coastal DEM construction
Hong, S.-H.; Lee, C.-W.; Won, J.-S.; Kwoun, Oh-Ig; Lu, Z.
2005-01-01
Topographic features in coastal regions including tidal flats change more significantly than landmass, and are characterized by extremely low slopes. High precision DEMs are required to monitor dynamic changes in coastal topography. It is difficult to obtain coherent interferometric SAR pairs especially over tidal flats mainly because of variation of tidal conditions. Here we focus on i) coherence of multi-pass ERS SAR interferometric pairs and ii) DEM construction from ERS-ENVISAT pairs. Coherences of multi-pass ERS interferograms were good enough to construct DEM under favorable tidal conditions. Coherence in sand dominant area was generally higher than that in muddy surface. The coarse grained coastal areas are favorable for multi-pass interferometry. Utilization of ERS-ENVISAT interferometric pairs is taken a growing interest. We carried out investigation using a cross-interferometric pair with a normal baseline of about 1.3 km, a 30 minutes temporal separation and the height sensitivity of about 6 meters. Preliminary results of ERS-ENVISAT interferometry were not successful due to baseline and unfavorable scattering conditions. ?? 2005 IEEE.
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Weld pool oscillation during GTA welding of mild steel
DOE Office of Scientific and Technical Information (OSTI.GOV)
Xiao, Y.H.; Ouden, G. den
1993-08-01
In this paper the results are reported of a study dealing with the oscillation behavior of weld pools in the case of GTA bead-on-plate welding of mild steel, Fe 360. During welding, the weld pool was brought into oscillation by applying short current pulses, and the oscillation frequency and amplitude were measured by monitoring the arc voltage. It was found that the oscillation of the partially penetrated weld pool is dominated by one of two different oscillation modes (Mode 1 and Mode 2) depending on the welding conditions, whereas the oscillation of the fully penetrated weld pool is characterized bymore » a third oscillation mode (Mode 3). It is possible to maintain partially penetrated weld pool oscillation in Mode 1 by choosing appropriate welding conditions. Under these conditions, an abrupt decrease in oscillation frequency occurs when the weld pool transfers from partial penetration to full penetration. Thus, weld penetration can be in-process controlled by monitoring the oscillation frequency during welding.« less
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Popovich, Cecilia A; Damiani, Cecilia; Constenla, Diana; Martínez, Ana María; Freije, Hugo; Giovanardi, Martina; Pancaldi, Simonetta; Leonardi, Patricia I
2012-06-01
The freshwater microalga Neochloris oleoabundans was used to study algal lipid production in enriched natural seawater, in order to assess its suitability as biodiesel feedstock. Optimal and nitrogen-stress (N-stress) conditions were analyzed. Under optimal conditions, the strain's growth rate was 0.73 div day(-1) and the biomass concentration was 1.5 g L(-1), while it had a maximum lipid yield under N-stress conditions (lipid content: 26% of dry weigh and lipid productivity: 56 mg L(-1) day(-1)). Lipid accumulation was mainly due to a significant increase of triacylglycerol content. Neutral lipids were characterized by a dominance of monounsaturated fatty acids and displayed a fatty acid profile that is suitable for biodiesel. This work offers an interesting alternative for sustainable microalgal oil synthesis for biodiesel production without using freshwater resources. However, further studies are necessary in order to optimize the lipid productivities required for commercial biodiesel production. Copyright © 2012 Elsevier Ltd. All rights reserved.
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The influence of gender on auditory and language cortical activation patterns: preliminary data.
Kocak, Mehmet; Ulmer, John L; Biswal, Bharat B; Aralasmak, Ayse; Daniels, David L; Mark, Leighton P
2005-10-01
Intersex cortical and functional asymmetry is an ongoing topic of investigation. In this pilot study, we sought to determine the influence of acoustic scanner noise and sex on auditory and language cortical activation patterns of the dominant hemisphere. Echoplanar functional MR imaging (fMRI; 1.5T) was performed on 12 healthy right-handed subjects (6 men and 6 women). Passive text listening tasks were employed in 2 different background acoustic scanner noise conditions (12 sections/2 seconds TR [6 Hz] and 4 sections/2 seconds TR [2 Hz]), with the first 4 sections in identical locations in the left hemisphere. Cross-correlation analysis was used to construct activation maps in subregions of auditory and language relevant cortex of the dominant (left) hemisphere, and activation areas were calculated by using coefficient thresholds of 0.5, 0.6, and 0.7. Text listening caused robust activation in anatomically defined auditory cortex, and weaker activation in language relevant cortex of all 12 individuals. As a whole, there was no significant difference in regional cortical activation between the 2 background acoustic scanner noise conditions. When sex was considered, men showed a significantly (P < .01) greater change in left hemisphere activation during the high scanner noise rate condition than did women. This effect was significant (P < .05) in the left superior temporal gyrus, the posterior aspect of the left middle temporal gyrus and superior temporal sulcus, and the left inferior frontal gyrus. Increase in the rate of background acoustic scanner noise caused increased activation in auditory and language relevant cortex of the dominant hemisphere in men compared with women where no such change in activation was observed. Our preliminary data suggest possible methodologic confounds of fMRI research and calls for larger investigations to substantiate our findings and further characterize sex-based influences on hemispheric activation patterns.
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Establishment of a Methanogenic Benzene-Degrading Culture and its Implication in Bioremediation
NASA Astrophysics Data System (ADS)
Qiao, W.; Luo, F.; Bawa, N.; Guo, S.; Ye, S.; Edwards, E.
2017-12-01
Benzene is a known human carcinogen and it is a common pollutant in groundwater, mainly resulting from petrochemical industry. Anaerobic degradation of benzene has significant advantages over aerobic processes for in situ bioremediation. In this study, new methanogenic and sulfate-reducing benzene degrading cultures have been enriched. Microbial community composition was characterized with two other previously established benzene-degrading cultures, and their potential use in bioaugmentation is investigated. In this study, a lab microcosm study was conducted anaerobically with contaminated soil and groundwater from a former chemical plant. Benzene degradation was observed in the presence of co-contaminants and electron donor. Through repetitive amendment of benzene, two enrichment cultures have been developed under sulfate and methanogenic conditions. Results from DNA amplicon sequencing and qPCR analysis revealed that an organism similar to previously described benzene-degrading Deltaproteobacterium has been enriched. The microbial community of this culture was compared with other two methanogenic benzene-degrading enrichment cultures that were derived from an oil refinery and a decommissioned gasoline station, and have been maintained for decades. Deltaproteobacterium ORM2-like microbes were dominate in all enrichment cultures, which brought to light benzene-degrading microbes, ORM2 were enriched under different geological conditions distributed around the world. The relative abundance of methanogens was much lower compared to previously established cultures, although substantial amount of methane was produced. The peripheral organisms also vary. To investigate effectiveness of using ORM2-dominant enrichment cultures in bioremediation, microcosm studies were set up using contaminated materials, and a ORM2-dominating methanogenic benzene-degrading culture was used for bioaugmentation. Results revealed that benzene degradation was speeded up under methanogenic or sulfate-reducing condition, and the growth of ORM2 was observed via qPCR analysis. The treatability test is on-going to establish more reliable correspondence between the benzene degraders and natural attenuation potential, to provide more insights into contaminated site management.
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Jin, Tao; Yan, Qingmei
2010-01-01
Using ammonia monooxygenase α-subunit (amoA) gene and 16S rRNA gene, the community structure and abundance of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in a nitrogen-removing reactor, which was operated for five phases, were characterized and quantified by cloning, terminal restriction fragment length polymorphism (T-RFLP), and quantitative polymerase chain reaction (qPCR). The results suggested that the dominant AOB in the reactor fell to the genus Nitrosomonas, while the dominant AOA belonged to Crenarchaeotal Group I.1a in phylum Crenarchaeota. Real-time PCR results demonstrated that the levels of AOB amoA varied from 2.9 × 103 to 2.3 × 105 copies per nanogram DNA, greatly (about 60 times) higher than those of AOA, which ranged from 1.7 × 102 to 3.8 × 103 copies per nanogram DNA. This indicated the possible leading role of AOB in the nitrification process in this study. T-RFLP results showed that the AOB community structure significantly shifted in different phases while AOA only showed one major peak for all the phases. The analyses also suggested that the AOB community was more sensitive than that of AOA to operational conditions, such as ammonia loading and dissolved oxygen. PMID:20405121
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NASA Astrophysics Data System (ADS)
Danovaro, R.; Carugati, L.; Boldrin, A.; Calafat, A.; Canals, M.; Fabres, J.; Finlay, K.; Heussner, S.; Miserocchi, S.; Sanchez-Vidal, A.
2017-08-01
Information on the dynamics of deep-sea biota is extremely scant particularly for long-term time series on deep-sea zooplankton. Here, we present the results of a deep-sea zooplankton investigation over one annual cycle based on samples from sediment trap moorings in three sub-basins along the Mediterranean Sea. Deep-sea zooplankton assemblages were dominated by copepods, as in shallow waters, only in the Adriatic Sea (>60% of total abundance), but not in the deep Ionian Sea, where ostracods represented >80%, neither in the deep Alboran Sea, where polychaetes were >70%. We found that deep-sea zooplankton assemblages: i) are subjected to changes in their abundance and structure over time, ii) are characterized by different dominant taxa in different basins, and iii) display clear taxonomic segregation between shallow and near-bottom waters. Zooplankton biodiversity decreases with increasing water depth, but the equitability increases. We suggest here that variations of zooplankton abundance and assemblage structure are likely influenced by the trophic condition characterizing the basins. Our findings provide new insights on this largely unknown component of the deep ocean, and suggest that changes in the export of organic matter from the photic zone, such as those expected as a consequence of global change, can significantly influence zooplankton assemblages in the largest biome on Earth.
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De novo dominant mutation of SOX10 gene in a Chinese family with Waardenburg syndrome type II.
Chen, Kaitian; Zong, Ling; Liu, Min; Zhan, Yuan; Wu, Xuan; Zou, Wenting; Jiang, Hongyan
2014-06-01
Waardenburg syndrome is a rare genetic disorder, inherited as an autosomal dominant trait. The condition is characterized by sensorineural hearing loss and pigment disturbances of the hair, skin, and iris. The de novo mutation in the SOX10 gene, responsible for Waardenburg syndrome type II, is rarely seen. The present study aimed to identify the genetic causes of Waardenburg syndrome type II in a Chinese family. Clinical and molecular evaluations were conducted in a Chinese family with Waardenburg syndrome type II. A novel SOX10 heterozygous c.259-260delCT mutation was identified. Heterozygosity was not observed in the parents and sister of the proband, indicating that the mutation has arisen de novo. The novel frameshift mutation, located in exon 3 of the SOX10 gene, disrupted normal amino acid coding from Leu87, leading to premature termination at nucleotide 396 (TGA). The high mobility group domain of SOX10 was inferred to be partially impaired. The novel heterozygous c.259-260delCT mutation in the SOX10 gene was considered to be the cause of Waardenburg syndrome in the proband. The clinical and genetic characterization of this family would help elucidate the genetic heterogeneity of SOX10 in Waardenburg syndrome type II. Moreover, the de novo pattern expanded the mutation data of SOX10. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.
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KBG syndrome involving a single-nucleotide duplication in ANKRD11
Kleyner, Robert; Malcolmson, Janet; Tegay, David; Ward, Kenneth; Maughan, Annette; Maughan, Glenn; Nelson, Lesa; Wang, Kai; Robison, Reid; Lyon, Gholson J.
2016-01-01
KBG syndrome is a rare autosomal dominant genetic condition characterized by neurological involvement and distinct facial, hand, and skeletal features. More than 70 cases have been reported; however, it is likely that KBG syndrome is underdiagnosed because of lack of comprehensive characterization of the heterogeneous phenotypic features. We describe the clinical manifestations in a male currently 13 years of age, who exhibited symptoms including epilepsy, severe developmental delay, distinct facial features, and hand anomalies, without a positive genetic diagnosis. Subsequent exome sequencing identified a novel de novo heterozygous single base pair duplication (c.6015dupA) in ANKRD11, which was validated by Sanger sequencing. This single-nucleotide duplication is predicted to lead to a premature stop codon and loss of function in ANKRD11, thereby implicating it as contributing to the proband's symptoms and yielding a molecular diagnosis of KBG syndrome. Before molecular diagnosis, this syndrome was not recognized in the proband, as several key features of the disorder were mild and were not recognized by clinicians, further supporting the concept of variable expressivity in many disorders. Although a diagnosis of cerebral folate deficiency has also been given, its significance for the proband's condition remains uncertain. PMID:27900361
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Physicochemical and optical properties of combustion-generated particles from Ship Diesel Engines
NASA Astrophysics Data System (ADS)
Kim, H.; Jeong, S.; Jin, H. C.; Kim, J. Y.
2015-12-01
Shipping contributes significantly to the anthropogenic burden of particulate matter (PM), and is among the world's highest polluting combustion sources per fuel consumed. Moreover, ships are a highly concentrated source of pollutants which are emitted into clean marine environments (e.g., Artic region). Shipping utilizes heavy fuel oil (HFO) which is less distilled compared to fuels used on land and few investigations on shipping related PM properties are available. BC is one of the dominant combustion products of ship diesel engines and its chemical and microphysical properties have a significant impact on climate by influencing the amount of albedo reduction on bright surfaces such as in polar regions. We have carried out a campaign to characterize the PM emissions from medium-sized marine engines in Gunsan, Jeonbuk Institute of Automotive Technology. The properties of ship-diesel PM have characterized depending on (1) fuel sulfur content (HFO vs. ULSD) and (2) engine conditions (Running state vs. Idling state). Scanning electron microscopy (SEM), high-resolution transmission electron microscopy (HRTEM), energy-dispersive X-ray spectroscopy (EDX) equipped with HRTEM and Raman spectroscopy were used for physicochemical analysis. Optical properties, which are ultimately linked to the snow/ice albedo decrease impacting climate, were assessed as well. PM generated under high engine temperature conditions had typical features of soot, e.g., concentric circles comprised of closely packed graphene layers, however PM generated by the idling state at low combustion temperature was characterized by amorphous and droplet-like carbonaceous particles with no crystalline structure. Significant differences in optical properties depending on the combustion conditions were also observed. Particles from running conditions showed wavelength-independent absorbing properties, whereas the particles from idling conditions showed enhanced absorption at shorter wavelengths, which is characteristic of brown carbon. Regarding different fuel types, distinctive structure differences were not observed, but EDX results showed that PM generated by HFO combustion has sulfur content in PM whereas ULSD generated 100% carbon composed PM.
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Bulk Comptonization by Turbulence in Black Hole Accretion Discs
NASA Astrophysics Data System (ADS)
Kaufman, Jason
Radiation pressure dominated accretion discs may have turbulent velocities that exceed the electron thermal velocities. Bulk Comptonization by the turbulence may therefore dominate over thermal Comptonization in determining the emergent spectrum. We discuss how to self-consistently resolve and interpret this effect in calculations of spectra of radiation MHD simulations. In particular, we show that this effect is dominated by radiation viscous dissipation and can be treated as thermal Comptonization with an equivalent temperature. We investigate whether bulk Comptonization may provide a physical basis for warm Comptonization models of the soft X-ray excess in AGN. We characterize our results with temperatures and optical depths to make contact with other models of this component. We show that bulk Comptonization shifts the Wien tail to higher energy and lowers the gas temperature, broadening the spectrum. More generally, we model the dependence of this effect on a wide range of fundamental accretion disc parameters, such as mass, luminosity, radius, spin, inner boundary condition, and the alpha parameter. Because our model connects bulk Comptonization to one dimensional vertical structure temperature profiles in a physically intuitive way, it will be useful for understanding this effect in future simulations run in new regimes. We also develop a global Monte Carlo code to study this effect in global radiation MHD simulations. This code can be used more broadly to compare global simulations with observed systems, and in particular to investigate whether magnetically dominated discs can explain why observed high Eddington accretion discs appear to be thermally stable.
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Truncating SLC5A7 mutations underlie a spectrum of dominant hereditary motor neuropathies.
Salter, Claire G; Beijer, Danique; Hardy, Holly; Barwick, Katy E S; Bower, Matthew; Mademan, Ines; De Jonghe, Peter; Deconinck, Tine; Russell, Mark A; McEntagart, Meriel M; Chioza, Barry A; Blakely, Randy D; Chilton, John K; De Bleecker, Jan; Baets, Jonathan; Baple, Emma L; Walk, David; Crosby, Andrew H
2018-04-01
To identify the genetic cause of disease in 2 previously unreported families with forms of distal hereditary motor neuropathies (dHMNs). The first family comprises individuals affected by dHMN type V, which lacks the cardinal clinical feature of vocal cord paralysis characteristic of dHMN-VII observed in the second family. Next-generation sequencing was performed on the proband of each family. Variants were annotated and filtered, initially focusing on genes associated with neuropathy. Candidate variants were further investigated and confirmed by dideoxy sequence analysis and cosegregation studies. Thorough patient phenotyping was completed, comprising clinical history, examination, and neurologic investigation. dHMNs are a heterogeneous group of peripheral motor neuron disorders characterized by length-dependent neuropathy and progressive distal limb muscle weakness and wasting. We previously reported a dominant-negative frameshift mutation located in the concluding exon of the SLC5A7 gene encoding the choline transporter (CHT), leading to protein truncation, as the likely cause of dominantly-inherited dHMN-VII in an extended UK family. In this study, our genetic studies identified distinct heterozygous frameshift mutations located in the last coding exon of SLC5A7 , predicted to result in the truncation of the CHT C-terminus, as the likely cause of the condition in each family. This study corroborates C-terminal CHT truncation as a cause of autosomal dominant dHMN, confirming upper limb predominating over lower limb involvement, and broadening the clinical spectrum arising from CHT malfunction.
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Changes in the predominant human Lactobacillus flora during in vitro fertilisation
Jakobsson, Tell; Forsum, Urban
2008-01-01
Background Signature matching of nucleotide sequences in the V1 and V3 regions 16S rRNA genes using pyrosequencing technology is a powerful tool for typing vaginal Lactobacilli to the species level and has been used for investigating the vaginal microbial niche. Methods This study has characterized the normal cultivable vaginal Lactobacillus flora at varying estradiol levels in plasma; the study comprised 17 patients undergoing ovarian stimulation for In Vitro Fertilization (IVF) treatment. The vaginal status of each participant was initially assessed as normal according to Amsel and Nugent criteria. Results L. crispatus, L. gasseri and/or L. jensenii were present in 10 of the patients throughout the study period, and little variation among these three species was encountered in individual patients. The flora of three women was dominated by L. delbrüeckii, L. rhamnosus or L. vaginalis. One woman exhibited a dominance of L. iners. The flora of the remaining three women were initially dominated by L. rhamnosus or L. reuteri, but as their estrogen levels rose, their flora composition altered, to become dominated by one of the three species most common in a normal, healthy vagina. Conclusion Signature matching of nucleotide sequences in the V1 and V3 regions of 16S rRNA genes is a discriminative tool for the study of vaginal Lactobacilli and can be used to track the Lactobacillus flora under a variety of physiological conditions. PMID:18590533
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Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments
Berg, Maureen; Stenuit, Ben; Ho, Joshua; Wang, Andrew; Parke, Caitlin; Knight, Matthew; Alvarez-Cohen, Lisa; Shapira, Michael
2016-01-01
It is now well accepted that the gut microbiota contributes to our health. However, what determines the microbiota composition is still unclear. Whereas it might be expected that the intestinal niche would be dominant in shaping the microbiota, studies in vertebrates have repeatedly demonstrated dominant effects of external factors such as host diet and environmental microbial diversity. Hypothesizing that genetic variation may interfere with discerning contributions of host factors, we turned to Caenorhabditis elegans as a new model, offering the ability to work with genetically homogenous populations. Deep sequencing of 16S rDNA was used to characterize the (previously unknown) worm gut microbiota as assembled from diverse produce-enriched soil environments under laboratory conditions. Comparisons of worm microbiotas with those in their soil environment revealed that worm microbiotas resembled each other even when assembled from different microbial environments, and enabled defining a shared core gut microbiota. Community analyses indicated that species assortment in the worm gut was non-random and that assembly rules differed from those in their soil habitat, pointing at the importance of competitive interactions between gut-residing taxa. The data presented fills a gap in C. elegans biology. Furthermore, our results demonstrate a dominant contribution of the host niche in shaping the gut microbiota. PMID:26800234
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Abe, Kiyomi; Oshima, Masao; Akasaka, Maiko; Konagaya, Ken-Ichi; Nanasato, Yoshihiko; Okuzaki, Ayako; Taniguchi, Yojiro; Tanaka, Junichi; Tabei, Yutaka
2018-03-01
Genomic selection is attracting attention in the field of crop breeding. To apply genomic selection effectively for autogamous (self-pollinating) crops, an efficient outcross system is desired. Since dominant male sterility is a powerful tool for easy and successive outcross of autogamous crops, we developed transgenic dominant male sterile rice ( Oryza sativa L.) using the barnase gene that is expressed by the tapetum-specific promoter BoA9 . Barnase -induced male sterile rice No. 10 (BMS10) was selected for its stable male sterility and normal growth characteristics. The BMS10 flowering habits, including heading date, flowering date, and daily flowering time of BMS10 tended to be delayed compared to wild type. When BMS10 and wild type were placed side-by-side and crossed under an open-pollinating condition, the seed-setting rate was <1.5%. When the clipping method was used to avoid the influence of late flowering habits, the seed-setting rate of BMS10 increased to a maximum of 86.4%. Although flowering synchronicity should be improved to increase the seed-setting rate, our results showed that this system can produce stable transgenic male sterility with normal female fertility in rice. The transgenic male sterile rice would promote a genomic selection-based breeding system in rice.
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Dominance of climate warming effects on recent drying trends over wet monsoon regions
NASA Astrophysics Data System (ADS)
Park, Chang-Eui; Jeong, Su-Jong; Ho, Chang-Hoi; Park, Hoonyoung; Piao, Shilong; Kim, Jinwon; Feng, Song
2017-09-01
Understanding changes in background dryness over land is key information for adapting to climate change because of its critical socioeconomic consequences. However, causes of continental dryness changes remain uncertain because various climate parameters control dryness. Here, we verify dominant climate variables determining dryness trends over continental eastern Asia, which is characterized by diverse hydroclimate regimes ranging from arid to humid, by quantifying the relative effects of changes in precipitation, solar radiation, wind speed, surface air temperature, and relative humidity on trends in the aridity index based on observed data from 189 weather stations for the period of 1961-2010. Before the early 1980s (1961-1983), change in precipitation is a primary condition for determining aridity trends. In the later period (1984-2010), the dominant climate parameter for aridity trends varies according to the hydroclimate regime. Drying trends in arid regions are mostly explained by reduced precipitation. In contrast, the increase in potential evapotranspiration due to increased atmospheric water-holding capacity, a secondary impact of warming, works to increase aridity over the humid monsoon region despite an enhanced water supply and relatively less warming. Our results show significant drying effects of warming over the humid monsoon region in recent decades; this also supports the drying trends over warm and water-sufficient regions in future climate.
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NASA Astrophysics Data System (ADS)
Hashemi Shahraki, Zahra; Sharififard, Hakimeh; Lashanizadegan, Asghar
2018-05-01
In order to produce activated carbon from grape stalks, this biomass was activated chemically with KOH. Identification methods including FTIR, BET, SEM, Boehm titration and pHzpc measurement were applied to characterize the produced carbon. The adsorption ability of produced activated carbon toward cadmium removal from aqueous solution was evaluated by using Central Composite Design methodology and the effects of process parameters were analysed, as well as, the optimum processing conditions were determined using statistical methods. In order to characterize the equilibrium behaviour of adsorption process, the equilibrium data were analysed by Langmuir, Freundlich, and R-D isotherm models. Results indicated that the adsorption process is a monolayer process and the adsorption capacity of prepared activated carbon was 140.84 mg L‑1. Analysis of kinetics data showed that the pseudo-second-order and Elovich models were well fitted with the kinetics results and this suggests the domination of chemical adsorption. The regenerability results showed that the prepared activated carbon has a reasonable adsorption capacity toward cadmium after five adsorption/desorption cycles.
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Carnahan, E.A.; Hoare, A.M.; Hallock, P.; Lidz, B.H.; Reich, C.D.
2009-01-01
This study assessed foraminiferal assemblages in Biscayne Bay, Florida, a heavily utilized estuary, interpreting changes over the past 65 years and providing a baseline for future comparisons. Analyses of foraminiferal data at the genus level revealed three distinct biotopes. The assemblage from the northern bay was characterized by stress-tolerant taxa, especially Ammonia, present in low abundances (???2.0 ?? 103 foraminifers/gram) though relatively high diversity (???19 genera/sample). The southwestern margin of the bay was dominated by Ammonia and Quinqueloculina, an assemblage characterized by the lowest diversities (???12 genera/sample) and highest abundances (???1.1 ?? 104 foraminifers/gram), influenced by both reduced salinity and elevated organic-carbon concentrations. A diverse assemblage of smaller miliolids and rotaliids (???26 genera/sample) characterized the open-bay assemblage, which also had a significant component (???10%) of taxa that host algal endosymbionts. In the past 65 years, populations of symbiont-bearing taxa, which are indicators of normal-marine conditions, have decreased while stress-tolerant taxa, especially Ammonia spp., have increased in predominance. ?? 2009 Elsevier Ltd.
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Harris, Emily Ann; Thai, Michael; Barlow, Fiona Kate
2017-01-01
The present study examined the effects of reading submission- and dominance-themed erotica on attitudes toward women and rape, ideal partner preferences, and subjective sexual arousal. Heterosexual male (n = 241) and female (n = 240) participants read one of three erotic stories depicting male dominance, female dominance, or no dominance, or a fourth nonerotic control story. First, we found that after reading about a sexually dominant man, women reported increased benevolent sexism compared to men, and men reported increased rape myth acceptance compared to women. Second, men and women showed a similar level of preference for partner dominance after reading about a sexually dominant woman. This was in contrast to the typical pattern revealed in all other conditions, whereby women were more likely to favor dominant partners relative to men. Finally, we found no evidence to support the hypothesis that the story describing male dominance would be the most arousing. Rather, all three erotic stories were equally sexually arousing compared to the control condition, and men and women did not differ in the extent to which the erotic stories aroused them. Theoretical and practical implications are discussed.
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NASA Astrophysics Data System (ADS)
Albrechtsen, Hans-JøRgen; Bjerg, Poul L.; Ludvigsen, Liselotte; Rügge, Kirsten; Christensen, Thomas H.
1999-04-01
Redox conditions may be environmental factors which affect the fate of the xenobiotic organic compounds. Therefore the redox conditions were characterized in an anaerobic, leachate-contaminated aquifer 15-60 m downgradient from the Grindsted Landfill, Denmark, where an field injection experiment was carried out. Furthermore, the stability of the redox conditions spatially and over time were investigated, and different approaches to deduce the redox conditions were evaluated. The redox conditions were evaluated in a set of 20 sediment and groundwater samples taken from locations adjacent to the sediment samples. Samples were investigated with respect to groundwater chemistry, including hydrogen and volatile fatty acids (VFAs) and sediment geochemistry, and bioassays were performed. The groundwater chemistry, including redox sensitive species for a large number of samples, varied over time during the experimental period of 924 days owing to variations in the leachate from the landfill. However, no indication of change in the redox environment resulting from the field injection experiment or natural variation was observed in the individual sampling points. The methane, Fe(II), hydrogen, and VFA groundwater chemistry parameters strongly indicated a Fe(III)-reducing environment. This was further supported by the bioassays, although methane production and sulfate-reduction were also observed in a few samples close to the landfill. On the basis of the calculated carbon conversion, Fe(III) was the dominant electron acceptor in the region of the aquifer, which was investigated. Because of the complexity of a landfill leachate plume, several redox processes may occur simultaneously, and an array of methods must be applied for redox characterization in such multicomponent systems.
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Distribution of dissolved manganese in the Peruvian Upwelling and Oxygen Minimum Zone
NASA Astrophysics Data System (ADS)
Vedamati, Jagruti; Chan, Catherine; Moffett, James W.
2015-05-01
The geochemistry of manganese (Mn) in seawater is dominated by its redox chemistry, as Mn(II) is soluble and Mn(IV) forms insoluble oxides, and redox transformations are mediated by a variety of processes in the oceans. Dissolved Mn (DMn) accumulates under reducing conditions and is depleted under oxidizing conditions. Thus the Peruvian upwelling region, characterized by highly reducing conditions over a broad continental shelf and a major oxygen minimum zone extending far offshore, is potentially a large source of Mn to the eastern Tropical South Pacific. In this study, DMn was determined on cruises in October 2005 and February 2010 in the Peruvian Upwelling and Oxygen Minimum Zone, to evaluate the relationship between Mn, oxygen and nitrogen cycle processes. DMn concentrations were determined using simple dilution and matrix-matched external standardization inductively coupled mass spectrometry. Surprisingly, DMn was depleted under the most reducing conditions along the Peruvian shelf. Concentrations of dissolved Mn in surface waters increased offshore, indicating that advection of Mn offshore from the Peruvian shelf is a minor source. Subsurface Mn maxima were observed within the oxycline rather than within the oxygen minimum zone (OMZ), indicating they arise from remineralization of organic matter rather than reduction of Mn oxides. The distribution of DMn appears to be dominated by non-redox processes and inputs from the atmosphere and from other regions associated with specific water masses. Lower than expected DMn concentrations on the shelf probably reflect limited fluvial inputs from the continent and efficient offshore transport. This behavior is in stark contrast to Fe, reported in a companion study which is very high on the shelf and undergoes dynamic redox cycling.
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NASA Astrophysics Data System (ADS)
Gugliotta, Marcello; Saito, Yoshiki; Nguyen, Van Lap; Ta, Thi Kim Oanh; Nakashima, Rei; Tamura, Toru; Uehara, Katsuto; Katsuki, Kota; Yamamoto, Seiichiro
2017-09-01
The fluvial to marine transition zone (FMTZ) is the area of coastal rivers in which sedimentation is controlled by the interaction of fluvial and marine processes. This study examines the FMTZ of the Mekong River delta, along a total channel length of 660 km. Methods consist of collection and analysis of channel bed sediment samples, measurements of channel morphological parameters, and recognition of mangrove, molluscan, and diatom species. The process regime, salinity, morphological, and sedimentary trends recognized were used to define two main tracts for this FMTZ: an upstream, fluvial-dominated tract and a downstream, tide-dominated tract. In more detail, they allow the identification of four subzones, from upstream to downstream: 1) fluvial-dominated, tide-affected; 2) fluvial-dominated, tide-influenced; 3) tide-dominated, fluvial-influenced; and 4) tide-dominated, fluvial-affected. Tide-induced water-level changes affect the entire study area and extend into Cambodia. Measured salinity intrusion extends 15 km upstream of the river mouth during wet season, and 50 km during dry season. Brackish water species of mangroves, mollusks, and diatoms, however, occur landward of these limits, suggesting that highly diluted brackish water may reach 160 km upstream of the river mouth during the dry season. In the fluvial-dominated tract, channels are sinuous and show a seaward-deepening trend, whereas width is relatively constant. In the tide-dominated tract, channels are straight, and show seaward-widening and seaward-shallowing trends. Natural levees are present in the fluvial-dominated, tide-affected subzone, but are replaced by mangroves elsewhere along the FMTZ. In the fluvial-dominated tract, mud content is low, sand grain size fines seaward, and gravelly sand and sand are the dominant facies. In the tide-dominated tract, mud content is high, sand grain size is constant, recycled sand is common, and tidal rhythmites are the dominant facies. Mud pebbles are common in sediments throughout a large part of the FMTZ. These trends characterizing the FMTZ of the Mekong River delta seem to be present in other systems and likely represent a general FMTZ pattern. Nonetheless, minor differences may be observed between different types of systems, or because of differences in local conditions. The comprehensive description of trends and their mutual relationships along the FMTZ presented herein provides critical information that can form the basis of a general conceptual model and can help to better understand these complex zones.
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Galmarini, Mara V; Loiseau, Anne-Laure; Debreyer, Doëtte; Visalli, Michel; Schlich, Pascal
2017-11-01
Even if wine and cheese have long been consumed together, there is little sensory evidence on how wine can influence the perception of cheese. In this work 4 cheeses were dynamically characterized in terms of dominant sensations without and with wine consumption in between intakes. The tasting protocol was based on multi-intake temporal dominance of sensations (TDS) coupled with hedonic rating. Frequent wine and cheese consumers (n = 31) evaluated 4 cheeses (Epoisses, Chaource, and 2 different Comté) over 3 consecutive bites. In the following sessions they performed the same task, but taking sips of wine (rosé Riceys, white Burgundy, red Burgundy, and red Beaujolais) between bites. All cheese-wine combinations were tasted over 4 sessions. TDS data were analyzed in terms of attribute duration of dominance by ANOVA, MANOVA, and canonical variate analysis. Results showed that wine consumption had an impact (P < 0.1) on dominance duration of attributes of cheeses, particularly on salty and some aromatic notes. But, as opposed to a previous work done by the same team, wine had no impact on the preference of cheese; this stayed constant under all the evaluating conditions. This paper aims to validate an innovative protocol on dynamic sensory data acquisition in which consumers evaluate the impact of a beverage (wine) on a solid food (cheese). This protocol is complementary to a previous one presented in this journal, where the effect of cheese was tested on wine. Together they make up an interesting approach towards developing a new tool for the food sector to better understand the impact of one food product on another. This could lead to a better description of a whole meal, something which is still missing in sensory science. © 2017 Institute of Food Technologists®.
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Tundra Fires in the Noatak National Preserve, Northwestern Alaska, Since 6000 yr BP
NASA Astrophysics Data System (ADS)
Chipman, M. L.; Higuera, P. E.; Allen, J.; Rupp, S.; Hu, F. S.
2008-12-01
Over 1.7 million hectares of Alaskan tundra have burned over the past 50 years, including the record-setting Anaktuvuk River fire in 2007. Despite this evidence indicating the flammable nature of these ecosystems under warm and dry conditions, land managers and global change scientists lack critical information concerning long-term relationships among fire, climate and tundra vegetation. This knowledge gap limits the ability to assess the response of the tundra fire regime to ongoing and predicted climate warming and potential feedbacks with Earth systems. We utilize macroscopic charcoal from lake-sediment cores to characterize the frequency component of fire regimes in shrub-dominated and herb-dominated tundra ecosystems in northwestern Alaska over the past 6000 years. Here we present the first long-term records of tundra fire regimes from the Noatak National Preserve, a region encompassing some of the most flammable tundra in the state. Results from three lakes indicate that fire has been a consistent process in the region, with fire return intervals (FRIs) ranging from 70 to 800+ years since 6000 yr BP. FRIs were similar between herb- and shrub-dominated tundra sites before ~2000 yr BP, with a mean FRI of 167 yr (95% CI 145-195) Over the past ~2000 years, however, herb- dominated sites burned more frequently (mean FRI 112 yr [95% CI 80-151]) than shrub-dominated sites (mean FRI 247 yr [95% CI 141-377]). At millennial time scales, shifts in historic FRIs were likely related to regional climate changes and/or associated vegetation changes. These results provide a context for resource management and serve to refine the tundra component of an ecosystem model designed to aid land managers in assessing fuels and fire hazards in the context of climatic change.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Ducros, A.; Alamowitch, S.; Nagy, T.
1996-01-01
Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a recently identified autosomal dominant cerebral arteriopathy characterized by the recurrence of subcortical infarcts leading to dementia. A genetic linkage analysis conducted in two large families recently allowed us to map the affected gene on chromosome 19 in a 12-cM interval bracketed by D19S221 and D19S215. In the present study, these first 2 families and 13 additional ones, including a total of 199 potentially informative meiosis, have been genotyped with eight polymorphic markers located between D19S221 and D19S215. All families were linked to chromosome 19. The highest combined lodmore » score (Z{sub max} = 37.24 at {theta} = .01) was obtained with marker D19S841, a new CA{sub n} microsatellite marker that we isolated from chromosome 19 cosmids. The recombinant events observed within these families were used to refine the genetic mapping of CADASIL within a 2-cM interval that is now bracketed by D19S226 and D19S199 on 19p13.1. These data strongly suggest the genetic homogeneity of this recently identified condition and establish the value of its clinical and neuroimaging diagnostic criteria. Besides their importance for the ongoing positional cloning of the CADASIL gene, these data help to refine the genetic mapping of CADASIL relative to familial hemiplegic migraine and hereditary paroxysmal cerebellar ataxia, conditions that we both mapped within the same chromosome 19 region. 35 refs., 5 figs., 2 tabs.« less
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Lactobacillus species as biomarkers and agents that can promote various aspects of vaginal health
Petrova, Mariya I.; Lievens, Elke; Malik, Shweta; Imholz, Nicole; Lebeer, Sarah
2015-01-01
The human body is colonized by a vast number of microorganisms collectively referred to as the human microbiota. One of the main microbiota body sites is the female genital tract, commonly dominated by Lactobacillus spp., in approximately 70% of women. Each individual species can constitute approximately 99% of the ribotypes observed in any individual woman. The most frequently isolated species are Lactobacillus crispatus, Lactobacillus gasseri, Lactobacillus jensenii and Lactobacillus iners. Residing at the port of entry of bacterial and viral pathogens, the vaginal Lactobacillus species can create a barrier against pathogen invasion since mainly products of their metabolism secreted in the cervicovaginal fluid can play an important role in the inhibition of bacterial and viral infections. Therefore, a Lactobacillus-dominated microbiota appears to be a good biomarker for a healthy vaginal ecosystem. This balance can be rapidly altered during processes such as menstruation, sexual activity, pregnancy and various infections. An abnormal vaginal microbiota is characterized by an increased diversity of microbial species, leading to a condition known as bacterial vaginosis. Information on the vaginal microbiota can be gathered from the analysis of cervicovaginal fluid, by using the Nugent scoring or the Amsel's criteria, or at the molecular level by investigating the number and type of Lactobacillus species. However, when translating this to the clinical setting, it should be noted that the absence of a Lactobacillus-dominated microbiota does not appear to directly imply a diseased condition or dysbiosis. Nevertheless, the widely documented beneficial role of vaginal Lactobacillus species demonstrates the potential of data on the composition and activity of lactobacilli as biomarkers for vaginal health. The substantiation and further validation of such biomarkers will allow the design of better targeted probiotic strategies. PMID:25859220
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Schmidt, S K; Darcy, J L; Sommers, Pacifica; Gunawan, Eva; Knelman, J E; Yager, Karina
2017-05-01
This is the first study of the highest elevation cyanobacteria-dominated microbial mat yet described. The desiccated mat was sampled in 2010 from an ephemeral rock pool at 5500 m above sea level in the Cordillera Vilcanota of southern Perú. After being frozen for 6 years at -20 °C in the lab, pieces of the mat were sequenced to fully characterize both the 16 and 18S microbial communities and experiments were conducted to determine if organisms in the mat could revive and become active under the extreme freeze-thaw conditions that these mats experience in the field. Sequencing revealed an unexpectedly diverse, multi-trophic microbial community with 16S OTU richness comparable to similar, seasonally desiccated mats from the Dry Valleys of Antarctica and low elevation sites in the Atacama Desert region. The bacterial community of the mat was dominated by phototrophs in the Cyanobacteria (Nostoc) and the Rhodospirillales, whereas the eukaryotic community was dominated by predators such as bdelloid rotifers (Philodinidae). Microcosm experiments showed that bdelloid rotifers in the mat were able to come out of dormancy and actively forage even under realistic field conditions (diurnal temperature fluctuations of -12 °C at night to + 27 °C during the day), and after being frozen for 6 years. Our results broaden our understanding of the diversity of life in periodically desiccated, high-elevation habitats and demonstrate that extreme freeze-thaw cycles per se are not a major factor limiting the development of at least some members of these unique microbial mat systems.
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Tumor morphology and phenotypic evolution driven by selective pressure from the microenvironment.
Anderson, Alexander R A; Weaver, Alissa M; Cummings, Peter T; Quaranta, Vito
2006-12-01
Emergence of invasive behavior in cancer is life-threatening, yet ill-defined due to its multifactorial nature. We present a multiscale mathematical model of cancer invasion, which considers cellular and microenvironmental factors simultaneously and interactively. Unexpectedly, the model simulations predict that harsh tumor microenvironment conditions (e.g., hypoxia, heterogenous extracellular matrix) exert a dramatic selective force on the tumor, which grows as an invasive mass with fingering margins, dominated by a few clones with aggressive traits. In contrast, mild microenvironment conditions (e.g., normoxia, homogeneous matrix) allow clones with similar aggressive traits to coexist with less aggressive phenotypes in a heterogeneous tumor mass with smooth, noninvasive margins. Thus, the genetic make-up of a cancer cell may realize its invasive potential through a clonal evolution process driven by definable microenvironmental selective forces. Our mathematical model provides a theoretical/experimental framework to quantitatively characterize this selective pressure for invasion and test ways to eliminate it.
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Trapezial osteotomy for the treatment of trapezial dysplasia.
El-Mahy, Mohammed M
2013-11-01
Dysplastic trapezium is a condition that is characterized by an exaggerated slant (slope) of the distal articular surface of the trapezium in relation to the axis of the second metacarpal. Usually, it becomes evident in the late teens and early 20s with proximolateral subluxation of the base of the first metacarpal and is associated with pain at the base of the thumb. It is more common in the dominant hand of women, but can affect both hands and either sex. The condition can be progressively painful and incapacitating, and those patients will require early support with medical treatment. Surgical management is indicated in persistent cases. In this study, we aimed at correcting theabnormal trapezial tilt in nonarthritic trapeziometacarpal joints by a dorsoradial open wedge osteotomy and bone graft, restoring the normal biomechanics around the joint, abolishing the abnormal loads sustained by the ligaments, and aiming to prevent the development of arthritic changes.
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Nettem, Sowmya; Nettemu, Sunil Kumar; Basha, K.; Venkatachalapathi, S
2014-01-01
Dentin dysplasia is an exceptionally rare, autosomal-dominant, hereditary condition, primarily characterized by defective dentin formation affecting both the deciduous and permanent dentitions. The etiology remains imprecise to date, in spite of the numerous hypotheses put forward and the constant updates on this condition. This case report of type I dentin dysplasia exhibits radiographic findings that are unique and diverse from the classical findings of various subtypes of this disease reported to date. This article also depicts the implant-based oral rehabilitation of the young patient diagnosed with this variant model of dentin dysplasia type I. Early diagnosis and implementation of this preventive and curative therapy is vital for avoiding premature exfoliation of deciduous and permanent dentition and the associated residual ridge resorption, thereby overcoming functional and esthetic deficits and ensuring protection of the remaining dentition from further harm. PMID:25225567
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Krawchuk, Meg A.; Haire, Sandra L.; Coop, Jonathan D.; Parisien, Marc-Andre; Whitman, Ellen; Chong, Geneva W.; Miller, Carol
2016-01-01
for seven study fires that burned in conifer-dominated forested landscapes of the Western Cordillera of Canada between 2001 and 2014. We fit nine models, each for distinct levels of fire weather and terrain ruggedness. Our framework revealed that the predictability and abundance of fire refugia varied among these environmental settings. We observed highest predictability under moderate fire weather conditions and moderate terrain ruggedness (ROC-AUC = 0.77), and lowest predictability in flatter landscapes and under high fire weather conditions (ROC-AUC = 0.63–0.68). Catchment slope, local aspect, relative position, topographic wetness, topographic convergence, and local slope all contributed to discriminating where refugia occur but the relative importance of these topographic controls differed among environments. Our framework allows us to characterize the predictability of contemporary fire refugia across multiple environmental settings and provides important insights for ecosystem resilience, wildfire management, conservation planning, and climate change adaptation.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Finley, C; Dave, J
Purpose: To characterize noise for image receptors of digital radiography systems based on pixel variance. Methods: Nine calibrated digital image receptors associated with nine new portable digital radiography systems (Carestream Health, Inc., Rochester, NY) were used in this study. For each image receptor, thirteen images were acquired with RQA5 beam conditions for input detector air kerma ranging from 0 to 110 µGy, and linearized ‘For Processing’ images were extracted. Mean pixel value (MPV), standard deviation (SD) and relative noise (SD/MPV) were obtained from each image using ROI sizes varying from 2.5×2.5 to 20×20 mm{sup 2}. Variance (SD{sup 2}) was plottedmore » as a function of input detector air kerma and the coefficients of the quadratic fit were used to derive structured, quantum and electronic noise coefficients. Relative noise was also fitted as a function of input detector air kerma to identify noise sources. The fitting functions used least-squares approach. Results: The coefficient of variation values obtained using different ROI sizes was less than 1% for all the images. The structured, quantum and electronic coefficients obtained from the quadratic fit of variance (r>0.97) were 0.43±0.10, 3.95±0.27 and 2.89±0.74 (mean ± standard deviation), respectively, indicating that overall the quantum noise was the dominant noise source. However, for one system electronic noise coefficient (3.91) was greater than quantum noise coefficient (3.56) indicating electronic noise to be dominant. Using relative noise values, the power parameter of the fitting equation (|r|>0.93) showed a mean and standard deviation of 0.46±0.02. A 0.50 value for this power parameter indicates quantum noise to be the dominant noise source whereas values around 0.50 indicate presence of other noise sources. Conclusion: Characterizing noise from pixel variance assists in identifying contributions from various noise sources that, eventually, may affect image quality. This approach may be integrated during periodic quality assessments of digital image receptors.« less
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A Lactobacillus-Deficient Vaginal Microbiota Dominates Postpartum Women in Rural Malawi
2018-01-01
ABSTRACT The bacterial community found in the vagina is an important determinant of a woman's health and disease status. A healthy vaginal microbiota is associated with low species richness and a high proportion of one of a number of different Lactobacillus spp. When disrupted, the resulting abnormal vaginal microbiota is associated with a number of disease states and poor pregnancy outcomes. Studies up until now have concentrated on relatively small numbers of American and European populations that may not capture the full complexity of the community or adequately predict what constitutes a healthy microbiota in all populations. In this study, we sampled and characterized the vaginal microbiota found on vaginal swabs taken postpartum from a cohort of 1,107 women in rural Malawi. We found a population dominated by Gardnerella vaginalis and devoid of the most common vaginal Lactobacillus species, even if the vagina was sampled over a year postpartum. This Lactobacillus-deficient anaerobic community, commonly labeled community state type (CST) 4, could be subdivided into four further communities. A Lactobacillus iners-dominated vaginal microbiota became more common the longer after delivery the vagina was sampled, but G. vaginalis remained the dominant organism. These results outline the difficulty in all-encompassing definitions of what a healthy or abnormal postpartum vaginal microbiota is. Previous identification of community state types and associations among bacterial species, bacterial vaginosis, and adverse birth outcomes may not represent the complex heterogeneity of the microbiota present. (This study has been registered at ClinicalTrials.gov as NCT01239693.) IMPORTANCE A bacterial community in the vaginal tract is dominated by a small number of Lactobacillus species, and when not present there is an increased incidence of inflammatory conditions and adverse birth outcomes. A switch to a vaginal bacterial community lacking in Lactobacillus species is common after pregnancy. In this study, we characterized the postpartum vaginal bacterial community of a large group of women from a resource-poor, undersampled population in rural Malawi. The majority of women were found to have a Lactobacillus-deficient community, and even when sampled a year after delivery the majority of women still did not have Lactobacillus present in their vaginal microbiota. The effect of becoming pregnant again for those who do not revert to a Lactobacillus-dominant community is unknown, and this could suggest that not all Lactobacillus-deficient community structures are adverse. A better understanding of this complex community state type is needed. PMID:29305501
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Association between cigarette smoking and the vaginal microbiota: a pilot study.
Brotman, Rebecca M; He, Xin; Gajer, Pawel; Fadrosh, Doug; Sharma, Eva; Mongodin, Emmanuel F; Ravel, Jacques; Glover, Elbert D; Rath, Jessica M
2014-08-28
Smoking has been identified in observational studies as a risk factor for bacterial vaginosis (BV), a condition defined in part by decimation of Lactobacillus spp. The anti-estrogenic effect of smoking and trace amounts of benzo[a]pyrene diol epoxide (BPDE) may predispose women to BV. BPDE increases bacteriophage induction in Lactobacillus spp. and is found in the vaginal secretions of smokers. We compared the vaginal microbiota between smokers and non-smokers and followed microbiota changes in a smoking cessation pilot study. In 2010-2011, 20 smokers and 20 non-smokers were recruited to a cross-sectional study (Phase A) and 9 smokers were enrolled and followed for a 12-week smoking cessation program (Phase B). Phase B included weekly behavioral counseling and nicotine patches to encourage smoking cessation. In both phases, participants self-collected mid-vaginal swabs (daily, Phase B) and completed behavioral surveys. Vaginal bacterial composition was characterized by pyrosequencing of barcoded 16S rRNA genes (V1-V3 regions). Vaginal smears were assigned Nugent Gram stain scores. Smoking status was evaluated (weekly, Phase B) using the semi-quantitative NicAlert® saliva cotinine test and carbon monoxide (CO) exhalation. In phase A, there was a significant trend for increasing saliva cotinine and CO exhalation with elevated Nugent scores (P value <0.005). Vaginal microbiota clustered into three community state types (CSTs); two dominated by Lactobacillus (L. iners, L. crispatus), and one lacking significant numbers of Lactobacillus spp. and characterized by anaerobes (termed CST-IV). Women who were observed in the low-Lactobacillus CST-IV state were 25-fold more likely to be smokers than those dominated by L. crispatus (aOR: 25.61, 95 % CI: 1.03-636.61). Four women completed Phase B. One of three who entered smoking cessation with high Nugent scores demonstrated a switch from CST-IV to a L.iners-dominated profile with a concomitant drop in Nugent scores which coincided with completion of nicotine patches. The other two women fluctuated between CST-IV and L. iners-dominated CSTs. The fourth woman had low Nugent scores with L. crispatus-dominated CSTs throughout. Smokers had a lower proportion of vaginal Lactobacillus spp. compared to non-smokers. Smoking cessation should be investigated as an adjunct to reducing recurrent BV. Larger studies are needed to confirm these findings.
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Effect of Different Ground Scenarios on Flow Structure of a Rotor At Hover Condition
NASA Astrophysics Data System (ADS)
Kocak, Goktug; Nalbantoglu, Volkan; Yavuz, Mehmet Metin
2017-11-01
The ground effect of a scaled model rotor at hover condition was investigated experimentally in a confined environment. Different ground effect scenarios including full, partial, and inclined conditions, compared to out of ground condition, were characterized qualitatively and quantitatively using laser illuminated smoke visualization and Laser Doppler Anemometry measurements. The results indicate that the presence of the ground affects the flow regime near the blade tip by changing the spatial extent and the path of the vortex core. After the impingement of the wake to the ground, highly unsteady and turbulent wake is observed. Both the mean and the root mean square of the induced velocity increase toward the blade tip. In line with this, the spectral power of the dominant frequency in the velocity fluctuations significantly increases toward the blade tip. All these observations are witnessed in all ground effect conditions tested in the present study. Considering the inclined ground effect in particular, it is observed that the mean induced velocities of the high side (mountain) are higher compared to the velocities of the low side (valley) in contrast to the general trend observed in the present study where the ground effect reduces the induced velocity.
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THE INTERNAL STRUCTURE OF OVERPRESSURED, MAGNETIZED, RELATIVISTIC JETS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Martí, J. M.; Perucho, M.; Gómez, J. L.
This work presents the first characterization of the internal structure of overpressured, steady superfast-magnetosonic relativistic jets in connection with their dominant type of energy. To this aim, relativistic magnetohydrodynamic simulations of different jet models threaded by a helical magnetic field have been analyzed covering a wide region in the magnetosonic Mach number–specific internal energy plane. The merit of this plane is that models dominated by different types of energy (internal energy: hot jets; rest-mass energy: kinetically dominated jets; magnetic energy: Poynting-flux-dominated jets) occupy well-separated regions. The analyzed models also cover a wide range of magnetizations. Models dominated by the internalmore » energy (i.e., hot models, or Poynting-flux-dominated jets with magnetizations larger than but close to one) have a rich internal structure characterized by a series of recollimation shocks and present the largest variations in the flow Lorentz factor (and internal energy density). Conversely, in kinetically dominated models, there is not much internal or magnetic energy to be converted into kinetic, and the jets are featureless with small variations in the flow Lorentz factor. The presence of a significant toroidal magnetic field threading the jet produces large gradients in the transversal profile of the internal energy density. Poynting-flux-dominated models with high magnetization (≈10 or larger) are prone to be unstable against magnetic pinch modes, which sets limits on the expected magnetization in parsec-scale active galactic nucleus jets or constrains their magnetic field configuration.« less
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NASA Astrophysics Data System (ADS)
Letizia, Di Bella; Martina, Pierdomenico; Roberta, Porretta; Chiocci, Francesco Latino; Eleonora, Martorelli
2017-05-01
Living (rose Bengal stained) and dead benthic foraminiferal assemblages were studied from 23 stations located between 60 and 670 m depth along the Gioia Canyon and the adjacent continental shelf and slope (Southern Tyrrhenian Sea). The aim of this study is to investigate the relationships among sedimentary processes, hydrological patterns and benthic foraminiferal distribution, in a highly dynamic environment. High sedimentation rates on the shelf and occasional turbidity flows along the canyon, lead to unstable environmental conditions at the seafloor that reflect on the microbenthic community influencing faunal density, diversity, species composition and distribution inside the sediment. The foraminiferal distribution seems to be controlled by sedimentary processes, nutrient supply and organic matter recycling, which in turn are strongly controlled by the seasonal variability of riverine inputs and current dynamics in the Gulf of Gioia. From the inner shelf to the upper continental slope (550 m depth), the living foraminiferal assemblage is dominated by agglutinated taxa, likely favored by the high terrigenous supply. Frequent eutrophic taxa (Valvulineria bradyana and Nonionella turgida) tolerant high turbidity (Leptohalysis scottii,) and low oxygen (Bolivina spp. and Bulimina spp.) are recorded on the edge of the inner shelf, where channeling, deposition of coastal deposits and occasional sediment gravity flows occur. In the outer sector of the shelf a turnover of species is observed; L. scottii replaced by the opportunistic species Reophax scorpiurus, and taxa indicative of high energy conditions (Cassidulina spp.) become dominant in association with mesotrophic species like Globocassidulina subglobosa. Along the continental slope, lower sedimentation rates and more stable environmental conditions support richer and more diversified foraminiferal assemblage. The abundance of Bulimina marginata indicates eutrophic conditions at the shallower station (300 m depth) whereas at greater depth (550 m) typical open slope species dominate (Gyroidina spp., Uvigerina mediterranea). Within the Gioia Canyon, benthic assemblage indicates environmental conditions similar to those observed in other Mediterranean and extra-Mediterranean canyons. The assemblage is characterized by eutrophic and low oxygen taxa (Bolivina spp., Bulimina spp.) in relation to periodical fluxes of sediment and organic matter. Similar relationships arise from the analysis of dead foraminiferal assemblages. However, the comparison between living and dead faunas highlight compositional and structural changes related to taphonomic processes.
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NASA Astrophysics Data System (ADS)
Wu, Jiawang; Liu, Zhifei; Stuut, Jan-Berend W.; Zhao, Yulong; Schirone, Antonio; de Lange, Gert J.
2017-05-01
Using elemental geochemistry, clay mineralogy, grain size end-member modeling, and planktonic foraminiferal δ18O, we characterize the provenance of central-Mediterranean sediments over the past 18 ka. The provenance is dust-dominated before and after the African Humid Period (AHP). By contrast, during the AHP (∼11-5 ka), largely concurrent with organic-rich sapropel S1 formation, it is predominantly riverine from North-African sources. Such fluvial supply is suggested to come from paleodrainage networks that were reactivated by intensified monsoon precipitation during the AHP. The supply is characterized by high Mg/Al and smectite contents, and has been accompanied by considerable freshwater influx, as indicated by the enhanced grain size and lighter foraminiferal δ18O. The clay-mineral assemblages in our core and in nearby cores correspond with a provenance from the Libyan-Tunisian margin, mainly via the paleo-river Irharhar. The inferred fluvial discharge is strongest during the late-AHP (∼8-5.5 ka), coinciding with reported enhanced fluvial dynamics and wettest conditions over western Libya and Tunisia/Algeria. This period is not only synchronous with the largest extension of open-water bodies in North Africa and lowest Saharan dust inputs, but also consistent with precipitation records of the West-African monsoon. Moreover, our records show a remarkable correspondence with that of a paleodrainage system towards the Atlantic West-African margin, inferring a common headwater region in the central Saharan mountains, and a similar climate mechanism. Taken together, we suggest a dominant control of North-African humid surfaces on the paleodrainage delivery, modulated by groundwater level, in response to the insolation-driven West-African monsoon precipitation.
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NASA Astrophysics Data System (ADS)
Dylmer, C. V.; Giraudeau, J.; Hanquiez, V.; Husum, K.
2015-04-01
The distributions of the coccolithophore species Emiliania huxleyi and Coccolithus pelagicus (heterococcolith-bearing phase) in the northern North Atlantic were investigated along two zonal transects crossing Fram Strait and the Norwegian-Iceland Sea, respectively, each conducted during both July 2011 and September-October 2007. Remote-sensing images as well as CTD and ARGO profiles were used to constrain the physico-chemical state of the surface water and surface mixed layer at the time of sampling. Strong seasonal differences in bulk coccolithophore standing stocks characterized the northern and southern transects, where the maximum values of 53×103 cells/l (fall) and 70×103 cells/l (summer), respectively, were essentially explained by E. huxleyi. This pattern confirms previous findings of a summer to fall northwestward shift in peak coccolithophore cell densities within the Nordic Seas. While depicting an overall zonal shift in high cell densities between the summer (Norwegian Sea) and fall (northern Iceland Sea) conditions, the southern transects were additionally characterized by local peak coccolithophore concentrations associated with a geographically and temporally restricted convective process (Lofoten Gyre, summer), as well as an island mass effect (in the vicinity of Jan Mayen Island, fall). Maximum coccolithophore abundances within Fram Strait were found during both seasons close to the western frontal zone (Polar and Arctic Fronts) an area of strong density gradients where physical and chemical properties of the surface mixed layer are prone to enhance phytoplankton biomass and productivity. Here, changes in species dominance from E. huxleyi in summer, to C. pelagicus in fall, were related to the strengthened influence during summer, of surface AW, as well as to high July solar irradiance, within an area usually characterized by C. pelagicus-dominated low density populations.
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Bottlenecks to coral recovery in the Seychelles
NASA Astrophysics Data System (ADS)
Chong-Seng, K. M.; Graham, N. A. J.; Pratchett, M. S.
2014-06-01
Processes that affect recovery of coral assemblages require investigation because coral reefs are experiencing a diverse array of more frequent disturbances. Potential bottlenecks to coral recovery include limited larval supply, low rates of settlement, and high mortality of new recruits or juvenile corals. We investigated spatial variation in local abundance of scleractinian corals in the Seychelles at three distinct life history stages (recruits, juveniles, and adults) on reefs with differing benthic conditions. Following widespread coral loss due to the 1998 bleaching event, some reefs are recovering (i.e., relatively high scleractinian coral cover: `coral-dominated'), some reefs have low cover of living macrobenthos and unconsolidated rubble substrates (`rubble-dominated'), and some reefs have high cover of macroalgae (`macroalgal-dominated'). Rates of coral recruitment to artificial settlement tiles were similar across all reef conditions, suggesting that larval supply does not explain differential coral recovery across the three reef types. However, acroporid recruits were absent on macroalgal-dominated reefs (0.0 ± 0.0 recruits tile-1) in comparison to coral-dominated reefs (5.2 ± 1.6 recruits tile-1). Juvenile coral colony density was significantly lower on macroalgal-dominated reefs (2.4 ± 1.1 colonies m-2), compared to coral-dominated reefs (16.8 ± 2.4 m-2) and rubble-dominated reefs (33.1 ± 7.3 m-2), suggesting that macroalgal-dominated reefs have either a bottleneck to successful settlement on the natural substrates or a high post-settlement mortality bottleneck. Rubble-dominated reefs had very low cover of adult corals (10.0 ± 1.7 %) compared to coral-dominated reefs (33.4 ± 3.6 %) despite no statistical difference in their juvenile coral densities. A bottleneck caused by low juvenile colony survivorship on unconsolidated rubble-dominated reefs is possible, or alternatively, recruitment to rubble-dominated reefs has only recently begun. This study identified bottlenecks to recovery of coral assemblages that varied depending on post-disturbance habitat condition.
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Tibbetts, Elizabeth A; Izzo, Amanda S
2009-11-01
There has been increasing interest in the mechanisms that mediate behavioral and physiological plasticity across individuals with similar genotypes. Some of the most dramatic plasticity is found within and between social insect castes. For example, Polistes wasp queens can nest alone, dominate a group of cooperative queens, or act as worker-like subordinates who rarely reproduce. Previous work suggests that condition-dependent endocrine responses may play a role in plasticity between castes in the hymenoptera. Here, we test whether condition-dependent endocrine responses influence plasticity within castes in the wasp Polistes dominulus. We experimentally manipulate juvenile hormone (JH) titers in nest-founding queens and assess whether JH mediates variation in behavior and physiology. JH generally increased dominance and fertility of queens, but JH's effects were not uniform across individuals. JH had a stronger effect on the dominance and fertility of large individuals and individuals with facial patterns advertising high quality than on the dominance and fertility of small individuals and those advertising low quality. These results demonstrate that JH has condition-dependent effects. As such, they clarify how JH can mediate different behaviors in well nourished queens and poorly nourished workers. Many Polistes queens nest cooperatively with other queens, so condition-dependent hormonal responses provide a mechanism for queens to adaptively allocate energy based on their probability of successfully becoming the dominant queen. Research on the endocrine basis of plasticity often focuses on variation in endocrine titers alone. However, differential endocrine responses are likely to be a widespread mechanism mediating behavioral and physiological plasticity.
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Condition assessment of tidal wetlands of Washington, Oregon and California
EPA and State partners conducted an assessment of the condition of estuarine tidal wetlands of Washington, Oregon and California at 217 sites during the summer of 2002. Dominant habitat types varied, although unvegetated sand or mud flats were the dominant habitat types for all...
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2007-08-01
zooplankton scatterer types, perhaps dominated by copepods and gas- bearing siphonophores (Lawson et al., 2004). Similar analyses of multi-frequency...in this Gulf of Maine study region, gas-bearing siphonophores dominated scattering at all four BIOMAPER-II frequencies (Lavery et al., in press...with multi-frequency acoustics. 2. Away from these locations, other zooplankton dominated scattering, especially copepods and gas-bearing siphonophores
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Lakušić, Branislava; Ristić, Mihailo; Slavkovska, Violeta; Milenković, Marina; Lakušić, Dmitar
2011-03-01
The chemical composition of the essential oils of Satureja horvatii Šilić from two natural habitats (Mt. Orjen and Mt. Lovćen in Montenegro) and from cultivated plants (Belgrade, Serbia) were characterized. For the latter, plants from the locus classicus, i.e., Orjenske Lokve (Mt. Orjen), were transferred to Belgrade and, after three years of cultivation, the chemical composition of their essential oils at different phenological stages was analyzed. The essential oils were obtained from the aerial parts of the plants by hydrodistillation and analyzed by GC and GC/MS. The yields and chemical compositions of the S. horvatii oils showed significant differences between the plants collected in the natural habitats and those from cultivation, as well as between the plants at different phenological stages. In the populations from the natural habitats, growing in Mediterranean conditions, the most abundant oil constituents were the phenols thymol (63.7% in the samples from Mt. Orjen) or carvacrol (68.1% in the samples from Mt. Lovćen), while the oils from the cultivated plants (Belgrade), growing in continental conditions, were dominated by linalool (up to 65.8 and 55.9% in average). The basic characteristics of the essential oil from plants at the early phenological stage (before flowering) were high percentages of linalool (37.4%), thymol (27.3%), and carvacrol (12.2%). At the stage of flowering, the percentage of linalool (56.6-57.5%) increased, while those of thymol (15.5-15.8%) and carvacrol (1.4-1.5%) significantly decreased. The essential oil of plants in the full stage of fruiting was characterized by the domination of linalool (58.4 and 65.8%) and lower percentages of thymol (7.6 and 1.3%) and carvacrol (0.7 and 0.1%). In conclusion, the oil composition of S. horvatii was found to depend on the pedoclimatic conditions of the habitat and the phenological stage of the plants. Copyright © 2011 Verlag Helvetica Chimica Acta AG, Zürich.
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NASA Astrophysics Data System (ADS)
Chapman, C. J.; Pennington, D.; Beitscher, M. R.; Godek, M. L.
2017-12-01
Understanding and forecasting the characteristics of winter weather change in the northern U.S. is vital to regional economy, agriculture, tourism and resident life. This is especially true in the Northeast and Northern Plains where substantial changes to the winter season have already been documented in the atmospheric science and biological literature. As there is no single established definition of `winter', this research attempts to identify the winter season in both regions utilizing a synoptic climatological approach with air mass frequencies. The Spatial Synoptic Classification is used to determine the daily air mass/ weather type conditions since 1950 at 40 locations across the two regions. Annual frequencies are first computed as a baseline reference. Then winter air mass frequencies and departures from normal are calculated to define the season along with the statistical significance. Once the synoptic winter is established, long-term regional changes to the season and significance are explored. As evident global changes have occurred after 1975, an Early period of years prior to 1975 and a Late set for all years following this date are compared. Early and Late record synoptic changes are then examined to assess any thermal and moisture condition changes of the regional winter air masses over time. Cold to moderately dry air masses dominate annually in both regions. Northeast winters are also characterized by cold to moderate dry air masses, with coastal locations experiencing more Moist Polar types. The Northern Plains winters are dominated by cold, dry air masses in the east and cold to moderate dry air masses in the west. Prior to 1975, Northeast winters are defined by an increase in cooler and wetter air masses. Dry Tropical air masses only occur in this region after 1975. Northern Plains winters are also characterized by more cold, dry air masses prior to 1975. More Dry Moderate and Moist Moderate air masses have occurred since 1975. These results demonstrate that Northeast winters have air mass conditions that have become warmer and drier in recent decades. Additionally, Northern Plains winters have air mass setups that have become warmer and more moist since the mid 1970s.
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NASA Astrophysics Data System (ADS)
Loick-Wilde, Natalie; Bombar, Deniz; Doan, Hai Nhu; Nguyen, Lam Ngoc; Nguyen-Thi, Anh Mai; Voss, Maren; Dippner, Joachim W.
2017-04-01
Investigating microplankton biomass and diversity under different climatological conditions is key to the understanding of cascading effects of climate change on nutrient cycles and biological productivity. Here we have used data collected during two contrasting summers along the coast of Viet Nam to show how climatological-driven changes can have a significant influence on the distribution of microplankton communities and their biomass via its impact on nutrient concentrations in the water column. The first summer in July 2003 followed a weak El-Nino Southern Oscillation (ENSO) event and was characterized by weak coastal upwelling, in the second summer during July 2004, upwelling was normal. Very low silicate (SiO4) concentrations and SiO4:DIN ratios characterized the source water mass for upwelling in July 2004, and dynamic SiO4 to dissolved inorganic nitrogen ratios (SiO4:DIN) mainly below the Redfield-Brzezinski ratio and DIN to phosphate ratios (DIN:PO43-) below the Redfield ratio were a common feature off Viet Nam. Much higher particle concentrations and PSi/PC ratios during normal upwelling revealed major changes in the microplankton community structure among summers. Small dinoflagellates (10-20 μm) prevailed ubiquitously during reduced upwelling. During normal upwelling, the diatom Rhizosolenia sp. dominated the cell-carbon biomass in the silicate poor upwelling waters. Trichodesmium erythraeum dominated in the Mekong-influenced and nutrient depleted offshore waters, where it co-occurred with Rhizosolenia sp. Both species were directly associated with the much higher primary production (PP) and N2 fixation rates that were quantified in earlier studies, as well as with much higher diversities at these offshore sites. Along the coast, the correlation between Rhizosolenia sp. and PP rates was less clear and the factors regulating the biomass of Rhizosolenia sp. in the upwelling waters are discussed. The very low silicate concentrations in the source water mass for upwelling and the offshore deflection of the Mekong river plume likely triggered the observed ecological differences in the microplankton communities off Viet Nam in the normal upwelling season compared to the post ENSO conditions.
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Model photoautrophs isolated from a Proterozoic ocean analog - aerobic life under anoxic conditions
NASA Astrophysics Data System (ADS)
Hamilton, T. L.; de Beer, D.; Klatt, J.; Macalady, J.; Weber, M.; Lott, C.; Chennu, A.
2016-12-01
The 1-2 billion year delay before the final rise of oxygen at the end of the Proterozoic represents an important gap in our understanding of ancient biogeochemical cycling. Primary production fueled by sulfide-dependent anoxygenic photosynthesis, including the activity of metabolically versatile cyanobacteria, has been invoked as a mechanism for sustaining low atmospheric O2 throughout much of the Proterozoic. However, we understand very little about photoautotrophs that inhabit Proterozoic-like environments present on Earth today. Here we report on the isolation and characterization of a cyanobacterium and a green sulfur bacterium that are the dominant members of pinnacle mats in Little Salt Spring—a karst sinkhole in Florida with perennially low levels of dissolved oxygen and sulfide. The red pinnacle mats bloom in the anoxic basin of the sinkhole and receive light that is of very poor quality to support photosynthesis. Characterization of the isolates is consistent with observations of oxygenic and anoxygenic photosynthesis in situ—both organisms perform anoxygenic photosynthesis under conditions of very low light quality and quantity. Oxygenic photosynthesis by the cyanobacterium isolate is inhibited by the presence of sulfide and under optimal light conditions, rates of anoxygenic photosynthesis are nearly double that of oxygenic photosynthesis. The green sulfur bacterium is tolerant of oxygen and has a very low affinity for sulfide. In Little Salt Spring, oxygenic photosynthesis occurs for only four hours a day and the water column remains anoxic because of a continuous supply of sulfide. Isolation and characterization of these photoautotrophs combined with our high resolution microsensor data in situ highlight microbial biogeochemical cycling in this exceptional site where aerobic microorganisms persist in a largely anoxic ecosystem.
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Distinct water activation on polar/non-polar facets of ZnO nanoparticles
DOE Office of Scientific and Technical Information (OSTI.GOV)
Zhang, He; Sun, Junming; Liu, Changjun
2015-11-01
ZnO nanoparticles with differing dominant facets were prepared and characterized by a complimentary of techniques such as X-ray diffraction, electron microscopy, temperature programmed desorption of H2O, and Fourier transform infrared spectroscopy analysis of adsorbed D2O. For the first time, water interaction/activation is compared on ZnO polar and non-polar facets. We report that non-polar facets exhibit high activity in water activation, which favors reactions such as ketonization and steam reforming in which dissociated water is involved. The distinct water dissociation on ZnO non-polar facets could be related to its facile formation of oxygen vacancies under realistic reaction conditions.
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Crouzon's Syndrome: A Case Report.
Kumar, G Ravi; Jyothsna, M; Ahmed, Syed Basheer; Lakshmi, K Sree
2013-01-01
Crouzon's syndrome (CS) is a rare autosomal dominant condition with multiple mutations of the fibroblast growth factor receptor (FGFR2) gene, which accounts for 4.8% of all cases of craniosynostosis. It is characterized by premature closure of cranial sutures, cranial deformities, midface hypoplasia, relative mandibular prognathism, hypertelorism, proptosis, strabismus and short upper lip, crowding of teeth, pseudocleft or sometimes cleft palate and other associated abnormalities. The CS can vary in severity from mild presentation to severe forms involving multiple cranial sutures. We report a case of CS in 11-year-old boy. How to cite this article: Kumar GR, Jyothsna M, Ahmed SB, Lakshmi KS, Crouzon's Syndrome: A Case Report. Int J Clin Pediatr Dent 2013;6(1):33-37.
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Genetics Home Reference: autosomal dominant partial epilepsy with auditory features
... Twitter Home Health Conditions ADPEAF Autosomal dominant partial epilepsy with auditory features Printable PDF Open All Close ... the expand/collapse boxes. Description Autosomal dominant partial epilepsy with auditory features ( ADPEAF ) is an uncommon form ...
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Fleming, Alyson H; Clark, Casey T; Calambokidis, John; Barlow, Jay
2016-03-01
Large, migratory predators are often cited as sentinel species for ecosystem processes and climate-related changes, but their utility as indicators is dependent upon an understanding of their response to environmental variability. Documentation of the links between climate variability, ecosystem change and predator dynamics is absent for most top predators. Identifying species that may be useful indicators and elucidating these mechanistic links provides insight into current ecological dynamics and may inform predictions of future ecosystem responses to climatic change. We examine humpback whale response to environmental variability through stable isotope analysis of diet over a dynamic 20-year period (1993-2012) in the California Current System (CCS). Humpback whale diets captured two major shifts in oceanographic and ecological conditions in the CCS. Isotopic signatures reflect a diet dominated by krill during periods characterized by positive phases of the North Pacific Gyre Oscillation (NPGO), cool sea surface temperature (SST), strong upwelling and high krill biomass. In contrast, humpback whale diets are dominated by schooling fish when the NPGO is negative, SST is warmer, seasonal upwelling is delayed and anchovy and sardine populations display increased biomass and range expansion. These findings demonstrate that humpback whales trophically respond to ecosystem shifts, and as a result, their foraging behavior is a synoptic indicator of oceanographic and ecological conditions across the CCS. Multi-decadal examination of these sentinel species thus provides insight into biological consequences of interannual climate fluctuations, fundamental to advancing ecosystem predictions related to global climate change. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.
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Time-varying economic dominance in financial markets: A bistable dynamics approach
NASA Astrophysics Data System (ADS)
He, Xue-Zhong; Li, Kai; Wang, Chuncheng
2018-05-01
By developing a continuous-time heterogeneous agent financial market model of multi-assets traded by fundamental and momentum investors, we provide a potential mechanism for generating time-varying dominance between fundamental and non-fundamental in financial markets. We show that investment constraints lead to the coexistence of a locally stable fundamental steady state and a locally stable limit cycle around the fundamental, characterized by a Bautin bifurcation. This provides a mechanism for market prices to switch stochastically between the two persistent but very different market states, leading to the coexistence and time-varying dominance of seemingly controversial efficient market and price momentum over different time periods. The model also generates other financial market stylized facts, such as spillover effects in both momentum and volatility, market booms, crashes, and correlation reduction due to cross-sectional momentum trading. Empirical evidence based on the U.S. market supports the main findings. The mechanism developed in this paper can be used to characterize time-varying economic dominance in economics and finance in general.
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Time-varying economic dominance in financial markets: A bistable dynamics approach.
He, Xue-Zhong; Li, Kai; Wang, Chuncheng
2018-05-01
By developing a continuous-time heterogeneous agent financial market model of multi-assets traded by fundamental and momentum investors, we provide a potential mechanism for generating time-varying dominance between fundamental and non-fundamental in financial markets. We show that investment constraints lead to the coexistence of a locally stable fundamental steady state and a locally stable limit cycle around the fundamental, characterized by a Bautin bifurcation. This provides a mechanism for market prices to switch stochastically between the two persistent but very different market states, leading to the coexistence and time-varying dominance of seemingly controversial efficient market and price momentum over different time periods. The model also generates other financial market stylized facts, such as spillover effects in both momentum and volatility, market booms, crashes, and correlation reduction due to cross-sectional momentum trading. Empirical evidence based on the U.S. market supports the main findings. The mechanism developed in this paper can be used to characterize time-varying economic dominance in economics and finance in general.
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Inkaew, Kanawut; Saffarzadeh, Amirhomayoun; Shimaoka, Takayuki
2016-06-01
This study investigated changes in bottom ash morphology and mineralogy under lab-scale quenching conditions. The main purpose was to clarify the mechanisms behind the formation of the quench product/layer around bottom ash particles. In the experiments, the unquenched bottom ashes were heated to 300°C for 1h, and were quenched by warm water (65°C) with different simulated conditions. After having filtered and dried, the ashes were analyzed by a combination of methodologies namely, particle size distribution analysis, intact particle and thin-section observation, X-ray diffractometry, and scanning electron microscope with energy dispersive X-ray spectroscopy. The results indicated that after quenching, the morphology and mineralogy of the bottom ash changed significantly. The freshly quenched bottom ash was dominated by a quench product that was characterized by amorphous and microcrystalline calcium-silicate-hydrate (CSH) phases. This product also enclosed tiny minerals, glasses, ceramics, metals, and organic materials. The dominant mineral phases produced by quenching process and detected by XRD were calcite, Friedel's salt, hydrocalumite and portlandite. The formation of quench product was controlled by the fine fraction of the bottom ash (particle size <0.425mm). From the observations, a conceptual model of the ash-water reactions and formation of the quench product in the bottom ash was proposed. Copyright © 2016 Elsevier Ltd. All rights reserved.
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Liu, Haibo; Li, Mengxue; Chen, Tianhu; Chen, Changlun; Alharbi, Njud S; Hayat, Tasawar; Chen, Dong; Zhang, Qiang; Sun, Yubing
2017-08-15
New nanoscale zerovalent iron/carbon (nZVI/C) composites were successfully prepared via heating natural hematite and pine sawdust at 800 °C under nitrogen conditions. Characterization by SEM, XRD, FTIR, and XPS analyses indicated that the as-prepared nZVI/C composites contained a large number of reactive sites. The lack of influence of the ionic strength revealed inner-sphere complexation dominated U(VI) uptake by the nZVI/C composites. Simultaneous adsorption and reduction were involved in the uptake process of U(VI) according to the results of XPS and XANES analyses. The presence of U-C/U-U shells demonstrated that innersphere complexation and surface coprecipitation dominated the U(VI) uptake at low and high pH conditions, respectively. The uptake behaviors of U(VI) by the nZVI/C composites were fitted well by surface complexation modeling with two weak and two strong sites. The maximum uptake capacity of U(VI) by the nZVI/C composites was 186.92 mg/g at pH 4.0 and 328 K. Additionally, the nZVI/C composites presented good recyclability and recoverability for U(VI) uptake in regeneration experiments. These observations indicated that the nZVI/C composites can be considered as potential adsorbents to remove radionuclides for environmental remediation.
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Deterministic Role of Collision Cascade Density in Radiation Defect Dynamics in Si
NASA Astrophysics Data System (ADS)
Wallace, J. B.; Aji, L. B. Bayu; Shao, L.; Kucheyev, S. O.
2018-05-01
The formation of stable radiation damage in solids often proceeds via complex dynamic annealing (DA) processes, involving point defect migration and interaction. The dependence of DA on irradiation conditions remains poorly understood even for Si. Here, we use a pulsed ion beam method to study defect interaction dynamics in Si bombarded in the temperature range from ˜-30 ° C to 210 °C with ions in a wide range of masses, from Ne to Xe, creating collision cascades with different densities. We demonstrate that the complexity of the influence of irradiation conditions on defect dynamics can be reduced to a deterministic effect of a single parameter, the average cascade density, calculated by taking into account the fractal nature of collision cascades. For each ion species, the DA rate exhibits two well-defined Arrhenius regions where different DA mechanisms dominate. These two regions intersect at a critical temperature, which depends linearly on the cascade density. The low-temperature DA regime is characterized by an activation energy of ˜0.1 eV , independent of the cascade density. The high-temperature regime, however, exhibits a change in the dominant DA process for cascade densities above ˜0.04 at.%, evidenced by an increase in the activation energy. These results clearly demonstrate a crucial role of the collision cascade density and can be used to predict radiation defect dynamics in Si.
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Deterministic Role of Collision Cascade Density in Radiation Defect Dynamics in Si.
Wallace, J B; Aji, L B Bayu; Shao, L; Kucheyev, S O
2018-05-25
The formation of stable radiation damage in solids often proceeds via complex dynamic annealing (DA) processes, involving point defect migration and interaction. The dependence of DA on irradiation conditions remains poorly understood even for Si. Here, we use a pulsed ion beam method to study defect interaction dynamics in Si bombarded in the temperature range from ∼-30 °C to 210 °C with ions in a wide range of masses, from Ne to Xe, creating collision cascades with different densities. We demonstrate that the complexity of the influence of irradiation conditions on defect dynamics can be reduced to a deterministic effect of a single parameter, the average cascade density, calculated by taking into account the fractal nature of collision cascades. For each ion species, the DA rate exhibits two well-defined Arrhenius regions where different DA mechanisms dominate. These two regions intersect at a critical temperature, which depends linearly on the cascade density. The low-temperature DA regime is characterized by an activation energy of ∼0.1 eV, independent of the cascade density. The high-temperature regime, however, exhibits a change in the dominant DA process for cascade densities above ∼0.04 at.%, evidenced by an increase in the activation energy. These results clearly demonstrate a crucial role of the collision cascade density and can be used to predict radiation defect dynamics in Si.
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NASA Astrophysics Data System (ADS)
Xian, Benzhong; Wang, Junhui; Gong, Chenglin; Yin, Yu; Chao, Chuzhi; Liu, Jianping; Zhang, Guodong; Yan, Qi
2018-06-01
Subaquatic channels are known as active conduits for the delivery of terrigenous sediments into related marine and lacustrine basins, as well as important targets for hydrocarbon exploration. Compared to submarine channels, lacustrine subaqueous channels created by hyperpycnal flows are understudied. Using well-exposed outcrops collected from three different locations in the southern Ordos Basin, central China, morphologies and architecture of a channelized hyperpycnal system were studied and classified. Six facies associations represent sedimentary processes from strong erosion by bedload dominated hyperpycnal flows, to transitional deposition jointly controlled by bedload and suspended-load dominated hyperpycnal flows, finally to deposition from suspended-load dominated hyperpycnal flows. On the basis of channel morphologies, infilling sediments and sedimentary processes, the documented channels can be classified into four main categories, which are erosional, bedload dominated, suspended-load dominated, and depositional channels. In very proximal and very distal locations, erosional channels and depositional channels serve as two end-members, while in middle areas, bedload-dominated channels and suspended-load dominated channels are transitional types. Erosional channels, as a response to strong erosion from bedload dominated hyperpycnal flows on upper slope, were mainly filled by mud interbedded with thin sand beds. As flow energy decreases, bedload dominated channels develop on middle slopes, which are characterized mainly by under- to balanced sediment infillings with cross-bedded sandstones and/or minor massive sandstones. Compared to bedload dominated channels, suspended-load dominated channels mainly develop in deeper water, and were filled mainly by massive or planar-laminated sandstones. Depositional channels, as a response to suspended-load dominated hyperpycnal flows in deep-water areas, are characterized by thin-medium bed classical turbidites with Bouma sequences and thin- to thick massive sandstones. Such evolution patterns of hyperpycnal channel systems are ascribed to the progressive decrease in flow capacity of hyperpycnal flows, and provide an adequate explanation for the basinward channelization behavior of hyperpycnal systems.
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NASA Astrophysics Data System (ADS)
Feehan, S.; Ruggiero, P.; Hempel, L. A.; Anderson, D. L.; Cohn, N.
2016-12-01
Characterizing Feedbacks Between Environmental Forcing and Sediment Characteristics in Fluvial and Coastal Systems American Geophysical Union, 2016 Fall Meeting: San Francisco, CA Authors: Scott Feehan, Peter Ruggiero, Laura Hempel, and Dylan Anderson Linking transport processes and sediment characteristics within different environments along the source to sink continuum provides critical insight into the dominant feedbacks between grain size distributions and morphological evolution. This research is focused on evaluating differences in sediment size distributions across both fluvial and coastal environments in the U.S. Pacific Northwest. The Cascades' high relief is characterized by diverse flow regimes with high peak/flashy flows and sub-threshold flows occurring in relative proximity and one of the most energetic wave climates in the world. Combining analyses of both fluvial and coastal environments provides a broader understanding of the dominant forces driving differences between each system's grain size distributions, sediment transport processes, and resultant evolution. We consider sediment samples taken during a large-scale flume experiment that simulated floods representative of both high/flashy peak flows analogous to runoff dominated rivers and sub-threshold flows, analogous to spring-fed rivers. High discharge flows resulted in narrower grain size distributions while low flows where less skewed. Relative sediment size showed clear dependence on distance from source and the environments' dominant fluid motion. Grain size distributions and sediment transport rates were also quantified in both wave dominated nearshore and aeolian dominated backshore portions of Long Beach Peninsula, Washington during SEDEX2, the Sandbar-aEolian-Dune EXchange Experiment of summer 2016. The distributions showed spatial patterns in mean grain size, skewness, and kurtosis dependent on the dominant sediment transport process. The feedback between these grain size distributions and the predominant driver of sediment transport controls the potential for geomorphic change on societally relevant time scales in multiple settings.
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The role of pore fluids on deforming volcanic rocks: an experimental study
NASA Astrophysics Data System (ADS)
Fazio, Marco; Benson, Philip; Vinciguerra, Sergio; Meredith, Philip
2015-04-01
Pore fluids play an important role on the process of the deformation of rocks. Not only it affects the mechanical properties and the elastic velocities of the material, but it is also responsible in the generation of a whole kind of seismicity, characterized by lower frequency and longer tail (i.e. Long Period, LP, and Hybrid events) than the Volcano-Tectonic (VT) signals, generated by simple shear. While great progress has been made in understanding VT events, LPs, Hybrid signals and the transition between these types of activity are not fully understood yet. This study, aiming in particular on the transition between VT and Hybrid events, shows the results of triaxial experiments on a volcanic rock, run both in dry and wet conditions, to better understand the role of the pore fluids on the final stage of the deformation tests, when the sample is approaching failure. This is achieved through a servo-controlled triaxial testing machine and a state-of the-art acoustic emissions (AEs) kit, composed by an array of 12 piezoelectric sensors surrounding the sample and by both a "triggered" unit, where the events are recorded only if a certain threshold is reached, and a "continuous" unit, where the data is recorded from the beginning to the end of the acquisition, fundamental when the AEs grow exponentially and the triggered unit cannot store at the same rate. The use of sensors of different dominant frequency allows us to better investigate the events occurring as the sample is approaching failure. In both conditions we observe a decrease of the dominant frequency of the seismic activity, due to two different processes: in dry conditions the coalescence of fractures, eventually leading to the major shear zone, creates relatively low-frequency VT events; the same occurs in wet conditions, but the movement of fluids, eased by the merging of the cracks, generates hybrid events. These two type of seismicity are then distinguished in terms of their source mechanism components, where the low-frequency VTs are characterized by a higher DC component, while hybrid events show a greater CLVD one. These results may have a great impacts in the failure forecasting models, not only in volcanic settings, but wherever the pore fluids play an important role on the stability of the rock mass.
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Who is the boss? Individual recognition memory and social hierarchy formation in crayfish.
Jiménez-Morales, Nayeli; Mendoza-Ángeles, Karina; Porras-Villalobos, Mercedes; Ibarra-Coronado, Elizabeth; Roldán-Roldán, Gabriel; Hernández-Falcón, Jesús
2018-01-01
Under laboratory conditions, crayfish establish hierarchical orders through agonistic encounters whose outcome defines the dominant one and one, or more, submissive animals. These agonistic encounters are ritualistic, based on threats, pushes, attacks, grabs, and avoidance behaviors that include retreats and escape responses. Agonistic behavior in a triad of unfamiliar, size-matched animals is intense on the first day of social interaction and the intensity fades on daily repetitions. The dominant animal keeps its status for long periods, and the submissive ones seem to remember 'who the boss is'. It has been assumed that animals remember and recognize their hierarchical status by urine signals, but the putative substance mediating this recognition has not been reported. The aim of this work was to characterize this hierarchical recognition memory. Triads of unfamiliar crayfish (male animals, size and weight-matched) were faced during standardized agonistic protocols for five consecutive days to analyze memory acquisition dynamics (Experiment 1). In Experiment 2, dominant crayfish were shifted among triads to disclose whether hierarchy depended upon individual recognition memory or recognition of status. The maintenance of the hierarchical structure without behavioral reinforcement was assessed by immobilizing the dominant animal during eleven daily agonistic encounters, and considering any shift in the dominance order (Experiment 3). Standard amnesic treatments (anisomycin, scopolamine or cold-anesthesia) were given to all members of the triads immediately after the first interaction session to prevent individual recognition memory consolidation and evaluate its effect on the hierarchical order (Experiment 4). Acquisition of hierarchical recognition occurs at the first agonistic encounter and agonistic behavior gradually diminishes in the following days; animals keep their hierarchical order despite the inability of the dominant crayfish to attack the submissive ones. Finally, blocking of protein synthesis or muscarinic receptors and cold anesthesia impair memory consolidation. These findings suggest that agonistic encounters induces the acquisition of a robust and lasting social recognition memory in crayfish. Copyright © 2017 Elsevier Inc. All rights reserved.
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Mean Field Games with a Dominating Player
DOE Office of Scientific and Technical Information (OSTI.GOV)
Bensoussan, A., E-mail: axb046100@utdallas.edu; Chau, M. H. M., E-mail: michaelchaumanho@gmail.com; Yam, S. C. P., E-mail: scpyam@sta.cuhk.edu.hk
In this article, we consider mean field games between a dominating player and a group of representative agents, each of which acts similarly and also interacts with each other through a mean field term being substantially influenced by the dominating player. We first provide the general theory and discuss the necessary condition for the optimal controls and equilibrium condition by adopting adjoint equation approach. We then present a special case in the context of linear-quadratic framework, in which a necessary and sufficient condition can be asserted by stochastic maximum principle; we finally establish the sufficient condition that guarantees the uniquemore » existence of the equilibrium control. The proof of the convergence result of finite player game to mean field counterpart is provided in Appendix.« less
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NASA Astrophysics Data System (ADS)
Rinaldi, Matteo; Gilardoni, Stefania; Paglione, Marco; Sandrini, Silvia; Decesari, Stefano; Zanca, Nicola; Marinoni, Angela; Cristofanelli, Paolo; Bonasoni, Paolo; Ielpo, Piera; Fossum, Kirsten; Gobbi, Gian Paolo; Facchini, Maria Cristina
2017-04-01
The Mediterranean basin is characterized by elevated aerosol amounts and co-existence of different aerosol types, both natural and anthropogenic, while it is one of the most climatically sensitive areas. Therefore, it offers ideal conditions for studying aerosol processes and aerosol-climate interactions. An intensive aerosol physico-chemical characterization campaign was held at the Environmental-Climatic Observatory at Capo Granitola (Sicily; 37.5753° N, 12.6595° E) during April 2016, under the framework of the project Air-Sea Lab. The Observatory is located at the coast-line, facing the Strait of Sicily, and is part of the national I-AMICA network (http://www.i-amica.it/i-amica/?lang=en). Sub-micrometer aerosol chemical composition was measured by high resolution time of flight aerosol mass spectrometer (HR-ToF-AMS), for the first time at Capogranitola. Sea-salt concentration was estimated from AMS measurements following Ovadnevaite et al. (2012). For a complete mass closure of the submicron aerosol, black carbon (BC) concentration was derived from multiangle absorption photometer (MAAP) measurements. Positive matrix factorization was deployed to investigate organic aerosol (OA) sources at the site. Aerosol chemical composition confirms that Capogranitola is a representative background site, with generally low contribution of BC and nitrate and highly oxidized OA. In particular, aerosol sampled in the marine sector (130-310°) is less affected by local sources and it is likely representative of the central Mediterranean background. Aerosol in background conditions is dominated by sulfate and OA (37% and 31%), followed by ammonium (12%), sea-salt (10%), BC (6%) and nitrate (3%). The average reconstructed sub-micrometer aerosol mass in background conditions is 3.7±2.3 μg m-3. OA source apportionment shows a minor contribution from primary sources, with hydrocarbon-like OA (HOA), from fossil fuel combustion, contributing for 3% and biomass burning OA (BBOA) for 2%. Oxidized OA (OOA) dominates the rest of OA mass. In particular, OOA1 and OOA2 (70% in total, OM:OC ˜ 2.5) represent the result of prolonged atmospheric processing of OA, while OOA3 (25%, OM:OC ˜ 2.0) clearly represents fresher inputs of OOA from land. Investigation of HOA and BC time trends suggests that HOA in background conditions may be strongly contributed by ship traffic more than by land sources. The representativity of the background aerosol collected at Capogranitola will be discussed by comparing with measurements performed in parallel at the other I-AMICA southern Italy coastal stations and with those acquired in a subsequent cruise (May-June 2016) around the Italian Peninsula. Aerosol climate relevant properties, in relation with chemical composition, will be also presented and discussed. Ovadnevaite J. et al. (2012), J. Geophys. Res., 117, D16201.
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NASA Astrophysics Data System (ADS)
Haselmair, Alexandra; Gallmetzer, Ivo; Tomasovych, Adam; Stachowitsch, Michael; Zuschin, Martin
2015-04-01
The northern Adriatic Sea, with its densely populated shoreline, is among the most degraded marine ecosystems worldwide and therefore particularly suited to study ecosystem modification under human pressure. In particular, the period of the last 500 to 1500 years witnessed major anthropogenic impacts here. The present study reconstructs major ecological shifts over this timespan by identifying down-core changes in molluscan death assemblages that can serve as proxies for changing environmental conditions. Here, we focus on taxonomical down-core fluctuations and changes in abundance of key bivalve and gastropod taxa found at seven sampling stations spread throughout the northern Adriatic basin. At these stations, which were chosen in order to cover different sediment types, nutrient conditions and degrees of exploitation, several cores of 1.5 m length and diameters of 90 and 160 mm were taken and sliced into smaller subsamples of 2 and 5 cm, respectively. The samples were sieved through a 1 mm mesh size and all the shells found counted and identified to species level if possible. In total, 114 bivalve and 112 gastropod species were recorded. At the Po delta and Panzano bay stations, characterized by muddy sediments, Corbula gibba and Kurtiella bidentata were the dominant bivalve species, Nassarius pygmaeus and Turritella communis the most abundand gastropods. In the sandy mud from the Brijuni islands, the bivalves Timoclea ovata and Striarca lactea were very numerous, whereas at the Piran station, characterized by a similar sediment composition, Gouldia minima and Corbula gibba reached the highest numbers. Overall abundances of bivalve and gastropod species differed markedly between stations. In all cores, the incidence of individual species varied down-core. Opposite trends were recorded for Brijuni and Piran station: at Piran, the abundance peaked in the uppermost sediment layers while at the Brijuni islands the number of most gastropod and bivalve species increased with depth. The down-core changes in species abundance and dominance can be correlated with shifts in the environmental parameters such as sedimentation rates and sediment composition and may also indicate anthropogenic influence. The available data from a radiometric sediment dating performed for all the seven sampling stations help to specify the timing of these past ecological changes.
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Venturi, Manuel; Guerrini, Simona; Vincenzini, Massimo
2012-08-01
The microbiota occurring in all the manufacturing phases of two Italian sourdough sweet-leavened baked goods (a typical Genoese dry biscuit, Lagaccio, and a soft stuffed North Italian typical cake, Panettone) were investigated over a period of three years. The two sourdough mother sponges were characterized by the stable presence of three dominant microbial species in potential competition for carbohydrates: Lactobacillus sanfranciscensis, Candida milleri, and Saccharomyces cerevisiae. Genotypic and phenotypic characterizations of microbial isolates pointed out that each mother sponge harbored its own strains, well distinguishable by molecular methods of analysis but not differing in their main metabolic properties from those known for the corresponding species. The microbial and biochemical evolution during the whole production protocol of both manufactures demonstrated that the three microbial species grew at almost the same growth rates, without exhausting any of the main carbon substrates (maltose, glucose and fructose). The quite similar growth dynamics under practical conditions and the constant presence of all fermentable carbohydrates were recognized as responsible for the stable non competitive association of maltose-positive and maltose-negative species in both sourdoughs. However, the two sourdoughs were characterized by quite different LAB to yeast ratio, with values significantly higher in Panettone than in Lagaccio. The cause of this difference could mainly be ascribed to the temperature of the mother sponge regeneration phase, that, in the case of Panettone manufacture, occurred under conditions of moderate refrigeration. Copyright © 2012 Elsevier Ltd. All rights reserved.
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Methane-producing microbial community in a coal bed of the Illinois Basin
Strapoc, D.; Picardal, F.W.; Turich, C.; Schaperdoth, I.; Macalady, J.L.; Lipp, J.S.; Lin, Y.-S.; Ertefai, T.F.; Schubotz, F.; Hinrichs, K.-U.; Mastalerz, Maria; Schimmelmann, A.
2008-01-01
A series of molecular and geochemical studies were performed to study microbial, coal bed methane formation in the eastern Illinois Basin. Results suggest that organic matter is biodegraded to simple molecules, such as H 2 and CO2, which fuel methanogenesis and the generation of large coal bed methane reserves. Small-subunit rRNA analysis of both the in situ microbial community and highly purified, methanogenic enrichments indicated that Methanocorpusculum is the dominant genus. Additionally, we characterized this methanogenic microorganism using scanning electron microscopy and distribution of intact polar cell membrane lipids. Phylogenetic studies of coal water samples helped us develop a model of methanogenic biodegradation of macromolecular coal and coal-derived oil by a complex microbial community. Based on enrichments, phylogenetic analyses, and calculated free energies at in situ subsurface conditions for relevant metabolisms (H2-utilizing methanogenesis, acetoclastic methanogenesis, and homoacetogenesis), H 2-utilizing methanogenesis appears to be the dominant terminal process of biodegradation of coal organic matter at this location. Copyright ?? 2008, American Society for Microbiology. All Rights Reserved.
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Interaction between a laminar starting immersed micro-jet and a parallel wall
NASA Astrophysics Data System (ADS)
Cabaleiro, Juan Martin; Laborde, Cecilia; Artana, Guillermo
2015-01-01
In the present work, we study the starting transient of an immersed micro-jet in close vicinity to a solid wall parallel to its axis. The experiments concern laminar jets (Re < 200) issuing from a 100 μm internal tip diameter glass micro-pipette. The effect of the confinement was studied placing the micro-pipette at different distances from the wall. The characterization of the jet was carried out by visualizations on which the morphology of the vortex head and trajectories was analyzed. Numerical simulations were used as a complementary tool for the analysis. The jet remains stable for very long distances away from the tip allowing for a similarity analysis. The self-similar behavior of the starting jet has been studied in terms of the frontline position with time. A symmetric and a wall dominated regime could be identified. The starting jet in the wall type regime, and in the symmetric regime as well, develops a self-similar behavior that has a relative rapid loss of memory of the preceding condition of the flow. Scaling for both regimes are those that correspond to viscous dominated flows.
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Long-term affects of experimental flows on riverine biota below a reservoir
NASA Astrophysics Data System (ADS)
Robinson, Chris; Ortlepp, Johannes
2010-05-01
Large dams have altered the flow regime of most rivers on the globe with consequent effects on riverine biota. Experimental flows (multiple floods per year) have been used on the regulated Spöl River below Livigno Reservoir for over 9 years to enhance the ecological condition of the river. The flow program has improved the brown trout fishery in the river as indicated by an increased number of redds. Floods have reset periphyton assemblages from a moss-dominated streambed to one dominated by diatoms and patches of filamentous algae. Zoobenthic assemblages have shown dramatic shifts in benthic structure in line with predictions from altered state models. Ecosystem regime shifts have been characterized with increases in parameter variances followed by periods of stable states. The system appears to be entering a second zoobenthic regime shift after year 8, perhaps in response to biotic interactions due to changes in the fishery. The response patterns clearly show that a long-term perspective must be in place when assessing biotic responses to changes in physical habitat properties resulting from flow experiments.
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Estimation of Time Scales in Unsteady Flows in a Turbomachinery Rig
NASA Technical Reports Server (NTRS)
Lewalle, Jacques; Ashpis, David E.
2004-01-01
Time scales in turbulent and transitional flow provide a link between experimental data and modeling, both in terms of physical content and for quantitative assessment. The problem of interest here is the definition of time scales in an unsteady flow. Using representative samples of data from GEAE low pressure turbine experiment in low speed research turbine facility with wake-induced transition, we document several methods to extract dominant frequencies, and compare the results. We show that conventional methods of time scale evaluation (based on autocorrelation functions and on Fourier spectra) and wavelet-based methods provide similar information when applied to stationary signals. We also show the greater flexibility of the wavelet-based methods when dealing with intermittent or strongly modulated data, as are encountered in transitioning boundary layers and in flows with unsteady forcing associated with wake passing. We define phase-averaged dominant frequencies that characterize the turbulence associated with freestream conditions and with the passing wakes downstream of a rotor. The relevance of these results for modeling is discussed in the paper.
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Perturbative instability of inflationary cosmology from quantum potentials
NASA Astrophysics Data System (ADS)
Tawfik, A.; Diab, A.; Abou El Dahab, E.
2017-09-01
It was argued that the Raychaudhuri equation with a quantum correction term seems to avoid the Big Bang singularity and to characterize an everlasting Universe (Ali and Das in Phys Lett B 741:276, 2015). Critical comments on both conclusions and on the correctness of the key expressions of this work were discussed in literature (Lashin in Mod Phys Lett 31:1650044, 2016). In the present work, we have analyzed the perturbative (in)stability conditions in the inflationary era of the early Universe. We conclude that both unstable and stable modes are incompatible with the corresponding ones obtained in the standard FLRW Universe. We have shown that unstable modes do exist at small (an)isotropic perturbation and for different equations of state. Inequalities for both unstable and stable solutions with the standard FLRW space were derived. They reveal that in the FLRW flat Universe both perturbative instability and stability are likely. While negative stability modes have been obtained for radiation- and matter-dominated eras, merely, instability modes exist in case of a finite cosmological constant and also if the vacuum energy dominates the cosmic background geometry.
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Yanuka-Golub, Keren; Reshef, Leah; Rishpon, Judith; Gophna, Uri
2016-07-01
For microbial fuel cells (MFCs) to become a cost-effective wastewater treatment technology, they must produce a stable electro-active microbial community quickly and operate under realistic wastewater nutrient conditions. The composition of the anodic-biofilm and planktonic-cells communities was followed temporally for MFCs operated under typical laboratory phosphate concentrations (134mgL(-1)P) versus wastewater phosphate concentrations (16mgL(-1)P). A stable peak voltage was attained two-fold faster in MFCs operating under lower phosphate concentration. All anodic-biofilms were composed of well-known exoelectrogenic bacterial families; however, MFCs showing faster startup and a stable voltage had a Desulfuromonadaceae-dominated-biofilm, while biofilms co-dominated by Desulfuromonadaceae and Geobacteraceae characterized slower or less stable MFCs. Interestingly,planktonic-cell concentrations of these bacteria followed a similar trend as the anodic-biofilm and could therefore serve as a biomarker for its formation. These results demonstrate that wastewater-phosphate concentrations do not compromise MFCs efficiency, and considerably speed up startup times. Copyright © 2016 Elsevier Ltd. All rights reserved.
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Temporal patterns in the soundscape of the shallow waters of a Mediterranean marine protected area.
Buscaino, Giuseppa; Ceraulo, Maria; Pieretti, Nadia; Corrias, Valentina; Farina, Almo; Filiciotto, Francesco; Maccarrone, Vincenzo; Grammauta, Rosario; Caruso, Francesco; Giuseppe, Alonge; Mazzola, Salvatore
2016-09-28
The study of marine soundscapes is an emerging field of research that contributes important information about biological compositions and environmental conditions. The seasonal and circadian soundscape trends of a marine protected area (MPA) in the Mediterranean Sea have been studied for one year using an autonomous acoustic recorder. Frequencies less than 1 kHz are dominated by noise generated by waves and are louder during the winter; conversely, higher frequencies (4-96 kHz) are dominated by snapping shrimp, which increase their acoustic activity at night during the summer. Fish choruses, below 2 kHz, characterize the soundscape at sunset during the summer. Because there are 13 vessel passages per hour on average, causing acoustic interference with fish choruses 46% of the time, this MPA cannot be considered to be protected from noise. On the basis of the high seasonal variability of the soundscape components, this study proposes a one-year acoustic monitoring protocol using the soundscape methodology approach and discusses the concept of MPA size.
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Temporal patterns in the soundscape of the shallow waters of a Mediterranean marine protected area
NASA Astrophysics Data System (ADS)
Buscaino, Giuseppa; Ceraulo, Maria; Pieretti, Nadia; Corrias, Valentina; Farina, Almo; Filiciotto, Francesco; Maccarrone, Vincenzo; Grammauta, Rosario; Caruso, Francesco; Giuseppe, Alonge; Mazzola, Salvatore
2016-09-01
The study of marine soundscapes is an emerging field of research that contributes important information about biological compositions and environmental conditions. The seasonal and circadian soundscape trends of a marine protected area (MPA) in the Mediterranean Sea have been studied for one year using an autonomous acoustic recorder. Frequencies less than 1 kHz are dominated by noise generated by waves and are louder during the winter; conversely, higher frequencies (4-96 kHz) are dominated by snapping shrimp, which increase their acoustic activity at night during the summer. Fish choruses, below 2 kHz, characterize the soundscape at sunset during the summer. Because there are 13 vessel passages per hour on average, causing acoustic interference with fish choruses 46% of the time, this MPA cannot be considered to be protected from noise. On the basis of the high seasonal variability of the soundscape components, this study proposes a one-year acoustic monitoring protocol using the soundscape methodology approach and discusses the concept of MPA size.
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Temporal patterns in the soundscape of the shallow waters of a Mediterranean marine protected area
Buscaino, Giuseppa; Ceraulo, Maria; Pieretti, Nadia; Corrias, Valentina; Farina, Almo; Filiciotto, Francesco; Maccarrone, Vincenzo; Grammauta, Rosario; Caruso, Francesco; Giuseppe, Alonge; Mazzola, Salvatore
2016-01-01
The study of marine soundscapes is an emerging field of research that contributes important information about biological compositions and environmental conditions. The seasonal and circadian soundscape trends of a marine protected area (MPA) in the Mediterranean Sea have been studied for one year using an autonomous acoustic recorder. Frequencies less than 1 kHz are dominated by noise generated by waves and are louder during the winter; conversely, higher frequencies (4–96 kHz) are dominated by snapping shrimp, which increase their acoustic activity at night during the summer. Fish choruses, below 2 kHz, characterize the soundscape at sunset during the summer. Because there are 13 vessel passages per hour on average, causing acoustic interference with fish choruses 46% of the time, this MPA cannot be considered to be protected from noise. On the basis of the high seasonal variability of the soundscape components, this study proposes a one-year acoustic monitoring protocol using the soundscape methodology approach and discusses the concept of MPA size. PMID:27677956
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Experimental characterization of turbulent inflow noise on a full-scale wind turbine
NASA Astrophysics Data System (ADS)
Buck, Steven; Oerlemans, Stefan; Palo, Scott
2016-12-01
An extensive experimental campaign was conducted on a 108-m diameter 2.3-MW wind turbine in order to assess the effect of inflow turbulence conditions on wind turbine acoustics. Over 50 h of continuous acoustic data was acquired at power-generating wind speeds. Twelve precision microphones were used, arranged in a one rotor radius ring about the turbine tower in order to assess the directivity of the noise emission. Turbine operational and atmospheric conditions were gathered simultaneously with acoustics measurements. The testing and analysis constitute perhaps the most thorough experimental characterization of turbulent inflow noise from a wind turbine to date. Turbulence intensities typically varied between 10 percent and 35 percent, and wind speeds covered most of the operational range of the wind turbine, from cut-on to well above its rated power. A method was developed for using blade-mounted accelerometers for determining the turbulence conditions in the immediate vicinity of the blades, which are the primary turbulence noise generating bodies. The method uses the blades' vibrational energy within a specified frequency range to estimate the overall turbulence conditions by assuming a von Kármán turbulence spectrum. Using this method, a clear positive correlation is shown between turbulence intensity and noise levels. The turbulence noise is dominant at low frequencies and is primarily observed in the upwind and downwind directions. Low frequency noise increases by as much as 6 dB for the range of turbulence conditions measured. Comparisons are made between the measured turbine noise directivity and theory using a simple acoustic model of the turbine as three point-sources. Strong agreement is found between the theoretical leading edge noise directivity model and the measured low frequency noise directivity.
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Measuring succession: methods for establishing long term vegetation monitoring sites
USDA-ARS?s Scientific Manuscript database
Successional stages are often characterized by dominant plant species (species with the highest cover) and their effect on the structure and function of an area through time. However, the plant species determining the ecosystem properties and plant community dynamics may not be the dominant, especia...
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NASA Astrophysics Data System (ADS)
De la Fuente, Maria; Vaunat, Jean; Pedone, Giuseppe; Cotecchia, Federica; Sollecito, Francesca; Casini, Francesca
2015-04-01
Tectonized clays are complex materials characterized by several levels of structures that may evolve during load and wetting/drying processes. Some microstructural patterns, as microfissures, have a particular influence on the value of permeability which is one of the main factors controlling pore pressure regime in slopes. In this work, the pore pressure regime measured in a real slope of tectonized clay in Southern Italy is analyzed by a numerical model that considers changes in permeability induced by microfissure closure and opening during the wetting and drying processes resulting from climatic actions. Permeability model accounts for the changes in Pore Size Distribution observed by Microscopy Intrusion Porosimetry. MIP tests are performed on representative samples of ground in initial conditions ("in situ" conditions) and final conditions (deformed sample after applying a wetting path that aims to reproduce the saturation of the soil under heavy rains). The resulting measurements allow for the characterization at microstructural level of the soil, identifying the distribution of dominant families pores in the sample and its evolution under external actions. Moreover, comparison of pore size density functions allows defining a microstructural parameter that depends on void ratio and degree of saturation and controls the variation of permeability. Model has been implemented in a thermo-hydro-mechanical code provided with a special boundary condition for climatic actions. Tool is used to analyze pore pressure measurements obtained in the tectonized clay slope. Results are analyzed at the light of the effect that permeability changes during wetting and drying have on the pore pressure regime.
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Modeling and characterization of multipath in global navigation satellite system ranging signals
NASA Astrophysics Data System (ADS)
Weiss, Jan Peter
The Global Positioning System (GPS) provides position, velocity, and time information to users in anywhere near the earth in real-time and regardless of weather conditions. Since the system became operational, improvements in many areas have reduced systematic errors affecting GPS measurements such that multipath, defined as any signal taking a path other than the direct, has become a significant, if not dominant, error source for many applications. This dissertation utilizes several approaches to characterize and model multipath errors in GPS measurements. Multipath errors in GPS ranging signals are characterized for several receiver systems and environments. Experimental P(Y) code multipath data are analyzed for ground stations with multipath levels ranging from minimal to severe, a C-12 turboprop, an F-18 jet, and an aircraft carrier. Comparisons between receivers utilizing single patch antennas and multi-element arrays are also made. In general, the results show significant reductions in multipath with antenna array processing, although large errors can occur even with this kind of equipment. Analysis of airborne platform multipath shows that the errors tend to be small in magnitude because the size of the aircraft limits the geometric delay of multipath signals, and high in frequency because aircraft dynamics cause rapid variations in geometric delay. A comprehensive multipath model is developed and validated. The model integrates 3D structure models, satellite ephemerides, electromagnetic ray-tracing algorithms, and detailed antenna and receiver models to predict multipath errors. Validation is performed by comparing experimental and simulated multipath via overall error statistics, per satellite time histories, and frequency content analysis. The validation environments include two urban buildings, an F-18, an aircraft carrier, and a rural area where terrain multipath dominates. The validated models are used to identify multipath sources, characterize signal properties, evaluate additional antenna and receiver tracking configurations, and estimate the reflection coefficients of multipath-producing surfaces. Dynamic models for an F-18 landing on an aircraft carrier correlate aircraft dynamics to multipath frequency content; the model also characterizes the separate contributions of multipath due to the aircraft, ship, and ocean to the overall error statistics. Finally, reflection coefficients for multipath produced by terrain are estimated via a least-squares algorithm.
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Obser, T; Ledford-Kraemer, M; Oyen, F; Brehm, M A; Denis, C V; Marschalek, R; Montgomery, R R; Sadler, J E; Schneppenheim, S; Budde, U; Schneppenheim, R
2016-09-01
Essentials Von Willebrand disease IIC Miami features high von Willebrand factor (VWF) with reduced function. We aimed to identify and characterize the elusive underlying mutation in the original family. An inframe duplication of VWF exons 9-10 was identified and characterized. The mutation causes a defect in VWF multimerization and decreased VWF clearance from the circulation. Background A variant of von Willebrand disease (VWD) type 2A, phenotype IIC (VWD2AIIC), is characterized by recessive inheritance, low von Willebrand factor antigen (VWF:Ag), lack of VWF high-molecular-weight multimers, absence of VWF proteolytic fragments and mutations in the VWF propeptide. A family with dominantly inherited VWD2AIIC but markedly elevated VWF:Ag of > 2 U L(-1) was described as VWD type IIC Miami (VWD2AIIC-Miami) in 1993; however, the molecular defect remained elusive. Objectives To identify the molecular mechanism underlying the phenotype of the original VWD2AIIC-Miami. Patients and Methods We studied the original family with VWD2AIIC-Miami phenotypically and by genotyping. The identified mutation was recombinantly expressed and characterized by standard techniques, confocal imaging and in a mouse model, respectively. Results By Multiplex ligation-dependent probe amplification we identified an in-frame duplication of VWF exons 9-10 (c.998_1156dup; p.Glu333_385dup) in all patients. Recombinant mutant (rm)VWF only presented as a dimer. Co-expressed with wild-type VWF, the multimer pattern was indistinguishable from patients' plasma VWF. Immunofluorescence studies indicated retention of rmVWF in unusually large intracellular granules in the endoplasmic reticulum. ADAMTS-13 proteolysis of rmVWF under denaturing conditions was normal; however, an aberrant proteolytic fragment was apparent. A decreased ratio of VWF propeptide to VWF:Ag and a 1-desamino-8-d-arginine vasopressin (DDAVP) test in one patient indicated delayed VWF clearance, which was supported by clearance data after infusion of rmVWF into VWF(-/-) mice. Conclusion The unique phenotype of VWD2 type IIC-Miami results from dominant impairment of multimer assembly, an aberrant structure of mutant mature VWF and reduced clearance in vivo. © 2016 International Society on Thrombosis and Haemostasis.
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Moncrieff, Glenn R; Scheiter, Simon; Bond, William J; Higgins, Steven I
2014-02-01
The dominant vegetation over much of the global land surface is not predetermined by contemporary climate, but also influenced by past environmental conditions. This confounds attempts to predict current and future biome distributions, because even a perfect model would project multiple possible biomes without knowledge of the historical vegetation state. Here we compare the distribution of tree- and grass-dominated biomes across Africa simulated using a dynamic global vegetation model (DGVM). We explicitly evaluate where and under what conditions multiple stable biome states are possible for current and projected future climates. Our simulation results show that multiple stable biomes states are possible for vast areas of tropical and subtropical Africa under current conditions. Widespread loss of the potential for multiple stable biomes states is projected in the 21st Century, driven by increasing atmospheric CO2 . Many sites where currently both tree-dominated and grass-dominated biomes are possible become deterministically tree-dominated. Regions with multiple stable biome states are widespread and require consideration when attempting to predict future vegetation changes. Testing for behaviour characteristic of systems with multiple stable equilibria, such as hysteresis and dependence on historical conditions, and the resulting uncertainty in simulated vegetation, will lead to improved projections of global change impacts. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.
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Modes of hurricane activity variability in the eastern Pacific: Implications for the 2016 season
NASA Astrophysics Data System (ADS)
Boucharel, Julien; Jin, Fei-Fei; England, Matthew H.; Lin, I. I.
2016-11-01
A gridded product of accumulated cyclone energy (ACE) in the eastern Pacific is constructed to assess the dominant mode of tropical cyclone (TC) activity variability. Results of an empirical orthogonal function decomposition and regression analysis of environmental variables indicate that the two dominant modes of ACE variability (40% of the total variance) are related to different flavors of the El Niño-Southern Oscillation (ENSO). The first mode, more active during the later part of the hurricane season (September-November), is linked to the eastern Pacific El Niño through the delayed oceanic control associated with the recharge-discharge mechanism. The second mode, dominant in the early months of the hurricane season, is related to the central Pacific El Niño mode and the associated changes in atmospheric variability. A multilinear regression forecast model of the dominant principal components of ACE variability is then constructed. The wintertime subsurface state of the eastern equatorial Pacific (characterizing ENSO heat discharge), the east-west tilt of the thermocline (describing ENSO phase transition), the anomalous ocean surface conditions in the TC region in spring (portraying atmospheric changes induced by persistence of local surface anomalies), and the intraseasonal atmospheric variability in the western Pacific are found to be good predictors of TC activity. Results complement NOAA's official forecast by providing additional spatial and temporal information. They indicate a more active 2016 season ( 2 times the ACE mean) with a spatial expansion into the central Pacific associated with the heat discharge from the 2015/2016 El Niño.
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Truncating SLC5A7 mutations underlie a spectrum of dominant hereditary motor neuropathies
Salter, Claire G.; Beijer, Danique; Hardy, Holly; Barwick, Katy E.S.; Bower, Matthew; Mademan, Ines; De Jonghe, Peter; Deconinck, Tine; Russell, Mark A.; McEntagart, Meriel M.; Chioza, Barry A.; Blakely, Randy D.; Chilton, John K.; De Bleecker, Jan; Baets, Jonathan; Baple, Emma L.
2018-01-01
Objective To identify the genetic cause of disease in 2 previously unreported families with forms of distal hereditary motor neuropathies (dHMNs). Methods The first family comprises individuals affected by dHMN type V, which lacks the cardinal clinical feature of vocal cord paralysis characteristic of dHMN-VII observed in the second family. Next-generation sequencing was performed on the proband of each family. Variants were annotated and filtered, initially focusing on genes associated with neuropathy. Candidate variants were further investigated and confirmed by dideoxy sequence analysis and cosegregation studies. Thorough patient phenotyping was completed, comprising clinical history, examination, and neurologic investigation. Results dHMNs are a heterogeneous group of peripheral motor neuron disorders characterized by length-dependent neuropathy and progressive distal limb muscle weakness and wasting. We previously reported a dominant-negative frameshift mutation located in the concluding exon of the SLC5A7 gene encoding the choline transporter (CHT), leading to protein truncation, as the likely cause of dominantly-inherited dHMN-VII in an extended UK family. In this study, our genetic studies identified distinct heterozygous frameshift mutations located in the last coding exon of SLC5A7, predicted to result in the truncation of the CHT C-terminus, as the likely cause of the condition in each family. Conclusions This study corroborates C-terminal CHT truncation as a cause of autosomal dominant dHMN, confirming upper limb predominating over lower limb involvement, and broadening the clinical spectrum arising from CHT malfunction. PMID:29582019
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Cuautle, M; Vergara, C H; Badano, E I
2016-04-01
Ants have been used to assess land use conversion, because they reflect environmental change, and their response to these changes have been useful in the identification of bioindicators. We evaluated ant diversity and composition associated to different land use change in a temperate forest (above 2000 m asl) in Mexico. The study was carried out in "Flor del Bosque" Park a vegetation mosaic of native Oak Forests and introduced Eucalyptus and grasslands. Species richness, dominance and diversity rarefaction curves, based on ant morphospecies and functional groups, were constructed and compared among the three vegetation types, for the rainy and the dry seasons of 2008-2009. Jaccard and Sorensen incidence-based indices were calculated to obtain similarity values among all the habitats. The Oak Forest was a rich dominant community, both in species and functional groups; the Eucalyptus plantation was diverse with low dominance. The most seasonality habitat was the grassland, with low species and high functional group diversity during the dry seasons, but the reverse pattern during the wet season. The Oak Forest was more similar to the Eucalyptus plantation than to the grassland, particularly during the dry season. Oak Forests are dominated by Cold Climate Specialists, specifically Prenolepis imparis (Say). The Eucalyptus and the grassland are characterized by generalized Myrmicinae, as Pheidole spp. and Monomorium ebenium (Forel). The conservation of the native Oak Forest is primordial for the maintenance of Cold Climate Specialist ant communities. The microclimatic conditions in this forest, probably, prevented the invasion by opportunistic species.
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Tidal asymmetry in a tidal creek with mixed mainly semidiurnal tide, Bushehr Port, Persian Gulf
NASA Astrophysics Data System (ADS)
Hosseini, Seyed Taleb; Chegini, Vahid; Sadrinasab, Masoud; Siadatmousavi, Seyed Mostafa; Yari, Sadegh
2016-03-01
This study investigated the tidal asymmetry imposed by both the interaction of principal tides and the higher harmonics generated by distortions within a tidal creek network with mixed mainly semidiurnal tide in the Bushehr Port, Persian Gulf. Since velocity and water-level imposed by principal triad tides K1-O1-M2 are in quadrature, duration asymmetries during a tidal period in this short, shallow inverse estuary should be manifest as skewed velocities. The principal tides produce periodic asymmetries including a strong ebb-dominance and a weak flood-dominance condition during spring and neap tides respectively. The higher harmonics induced by nonlinearities engender a flood-dominance condition where the convergence effects are higher than frictional effects, and an ebbdominance condition where intertidal storage are extended. Since the triad K1-O1-M2 driven asymmetry is not overcome by higher harmonics close to the mouth, the periodic asymmetry dominates within the creek in which higher harmonics reinforce the weak flood-dominance (strong ebb-dominance) condition in the convergent channel (divergent area). Also, the maximum flood and the maximum ebb from all harmonic constituents occurred close to high water slack time during both spring and neap tides in this short creek. Since occational wetting of intertidal areas happened close to the high water (HW) time during spring tide, the water level flooded slowly close to the HW time of the spring tide.
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NASA Astrophysics Data System (ADS)
Barron, J. A.; Metcalfe, S. E.; Davies, S. J.
2014-12-01
We evaluate proxy reconstructions of Holocene records precipitation in the North American Monsoon region (SW US and northern Mexico) and regions to the south (southern Mexico, Central America, and the Caribbean). Seventy-seven precipitation records are tabulated at 2-3 kyr increments for the past 12 kyr, with results displayed mainly on maps. Sites currently dominated by summer precipitation, coupled with proxy records that distinguish summer vs. winter vegetation are used to estimate summer precipitation. Resulting patterns of precipitation variability are evaluated against SST reconstructions from surrounding tropical seas -eastern tropical Pacific, Gulf of California (GoC), Caribbean, and Gulf of Mexico (GoM), which are source areas for summer precipitation. During the Younger Dryas, ca. 12 ka, widespread drying in southern regions contrasted with evidence for wetter conditions in multiple records from the SW US. By 9 ka wetter conditions had spread to the southern regions, likely reflecting an increased Caribbean low-level jet associated with an enhanced Bermuda High. Pacific westerlies contributed significant winter precipitation to the southwestern US and northernmost Mexico at 9 ka. The modern geographical pattern of summer precipitation was established by 6 ka, as the Bermuda High moved northward following the demise of the Laurentide Ice Sheet. SSTs in the GoC and GoM increased, and the NAM strengthened. Increased regional precipitation differences are apparent by 4 ka, likely reflecting enhanced ENSO variability. Most of the southern region experienced increased precipitation during the Medieval Climate Anomaly (MCA), whereas winter drought dominated in the north. In contrast, much of the Little Ice Age (LIA) was characterized by generally drier conditions in Central America and Mexico, with wetter conditions in the SW US. Results are broadly supportive of enhanced La Niña-like conditions during the MCA vs. increased ENSO variability during the LIA.
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NASA Astrophysics Data System (ADS)
Katsev, S.; Li, J.
2017-12-01
Predicting the time scales on which lake ecosystems respond to changes in anthropogenic phosphorus loadings is critical for devising efficient management strategies and setting regulatory limits on loading. Internal loading of phosphorus from sediments, however, can significantly contribute to the lake P budget and may delay recovery from eutrophication. The efficiency of mineralization and recycling of settled P in bottom sediments, which is ultimately responsible for this loading, is often poorly known and is surprisingly poorly characterized in the societally important systems such as the Great Lakes. We show that a simple mass-balance model that uses only a minimum number of parameters, all of which are measurable, can successfully predict the time scales over which the total phosphorus (TP) content of lakes responds to changes in external loadings, in a range of situations. The model also predicts the eventual TP levels attained under stable loading conditions. We characterize the efficiency of P recycling in Lake Superior based on a detailed characterization of sediments at 13 locations that includes chemical extractions for P and Fe fractions and characterization of sediment-water exchange fluxes of P. Despite the low efficiency of P remobilization in these deeply oxygenated sediments (only 12% of deposited P is recycled), effluxes of dissolved phosphorus (2.5-7.0 μmol m-2 d-1) still contribute 37% to total P inputs into the water column. In this oligotrophic large lake, phosphate effluxes are regulated by organic sedimentation rather than sediment redox conditions. By adjusting the recycling efficiency to conditions in other Laurentian Great Lakes, we show that the model reproduces the historical data for total phosphorus levels. Analysis further suggests that, in the Lower Lakes, the rate of P sequestration from water column into sediments has undergone a significant change in recent decades, possibly in response to their invasion by quagga mussels. Importantly, even for lakes where P budgets are dominated by internal loading, mass balance arguments show that, over multi-year time scales, lakes should respond to changes in external P inputs faster than their hydrological residence times.
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NASA Astrophysics Data System (ADS)
Zhang, Yu; Jin, Lei; Jiang, Dandan; Zou, Xingqi; Zhao, Zhiguo; Gao, Jing; Zeng, Ming; Zhou, Wenbin; Tang, Zhaoyun; Huo, Zongliang
2018-03-01
In order to optimize program disturbance characteristics effectively, a characterization approach that measures top select transistor (TSG) leakage from bit-line is proposed to quantify TSG leakage under program inhibit condition in 3D NAND flash memory. Based on this approach, the effect of Vth modulation of two-cell TSG on leakage is evaluated. By checking the dependence of leakage and corresponding program disturbance on upper and lower TSG Vth, this approach is validated. The optimal Vth pattern with high upper TSG Vth and low lower TSG Vth has been suggested for low leakage current and high boosted channel potential. It is found that upper TSG plays dominant role in preventing drain induced barrier lowering (DIBL) leakage from boosted channel to bit-line, while lower TSG assists to further suppress TSG leakage by providing smooth potential drop from dummy WL to edge of TSG, consequently suppressing trap assisted band-to-band tunneling current (BTBT) between dummy WL and TSG.
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SiC Fibers and SiCf/SiC Ceramic Matrix Minicomposites Damage Behavior
NASA Technical Reports Server (NTRS)
Almansour, Amjad S.
2017-01-01
Silicon Carbide based Ceramic Matrix Composites (CMCs) are attractive materials for use in high-temperature applications in the aerospace industry. Performance and durability of CMCs depend on the properties of its constituents such as fibers and matrix. Therefore, CMCs constituents limitations and damage mechanisms are discussed and characterized in representative simulated application conditions and dominant damage mechanisms are identified at elevated temperatures. In this work, the initiation and evolution of damage in Hi-Nicalon type S fiber-reinforced minicomposites with different interphases thicknesses from different manufacturers were investigated employing several nondestructive evaluation techniques such as acoustic emission, electrical resistance and microscopy. Moreover, the tensile creep behavior of single Hi-Nicalon Type S SiC fibers were tested and characterized and creep parameters were extracted. Fibers creep tests were performed in air or vacuum at 1200-1482 C under high stresses. Creep parameters was then used in understanding load sharing and lifing of ceramic matrix minicomposites. Future work plans will be reviewed.
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Purification and characterization of Aspergillus niger exo-1,4-glucosidase.
Freedberg, I M; Levin, Y; Kay, C M; McCubbin, W D; Katchalski-Katzir, E
1975-06-24
A specific exo-1,4-glucosidase (1,4-alpha-D-glucan glucohydrooase, EC 3.2.1.3) from Aspergillus niger has been partially purified and subsequently characterized by biochemical, physico-chemical and optical methods. Molecular sieve chromatography yields an enzyme with maximal activity at pH 4.2-4.5 close to its isoelectric point. Reduction and carboxymethylation leads to complete loss of activity and O-acetylation of 3 of the 13 tyrosine residues results in loss of 20 % of the activity. Sodium dodecylsulfate-polyacrylamide gel electrophoresis indicates that the native enzyme consists of two major components of molecular weights 63 000 and 57 500, respectively. Small amounts of dissociated material of molecular weight 28 000 and 16 000 as well as aggregates of the order of 100 000 are also present to the extent of 2-5% of the total potein. Following reduction and carboxymethylation under forcing conditions, the bands around 60 000 diminish and the 28 000-30 000, 16 000 and aggregate bands are dominant...
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Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers
USDA-ARS?s Scientific Manuscript database
Germplasm from the center of origin/diversity is important for the breeding and fingerprinting crop plants. In this study we utilized both dominant and co-dominant markers for the characterization of garlic samples from diverse geographic origins to assess the relative utility of these markers to id...
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Stress Priming and Statistical Learning in Italian Nonword Reading: Evidence from Children
ERIC Educational Resources Information Center
Colombo, Lucia; Deguchi, Chizuru; Boureux, Magali
2014-01-01
Italian has regular spelling-sound correspondences; however, assignment of lexical stress is unpredictable. Sensitivity to stress neighborhood information was investigated by constructing three types of three-syllabic nonwords: nonwords with word-endings characterized by a strong neighborhood of dominant stress words (dominant), nonwords with…
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NASA Astrophysics Data System (ADS)
Chi, X.; Winderlich, J.; Mayer, J.-C.; Panov, A. V.; Heimann, M.; Birmili, W.; Heintzenberg, J.; Cheng, Y.; Andreae, M. O.
2013-12-01
Siberia is one of few continental regions in the Northern Hemisphere where the atmosphere may sometimes approach pristine background conditions. We present the time series of aerosol and carbon monoxide (CO) measurements between September 2006 and December 2011 at the Zotino Tall Tower Observatory (ZOTTO) in Central Siberia (61° N; 89° E). We investigate the seasonal, weekly and diurnal variations of aerosol properties (including absorption and scattering coefficients and derived parameters, such as equivalent black carbon (BCe), Ångström exponent, single scattering albedo, and backscattering ratio) and the CO mixing ratios. Criteria were established to distinguish polluted from near-pristine air masses, providing quantitative characteristics for each type. Depending on the season, 23-36% of the sampling time at ZOTTO was found to be representative of a clean atmosphere. The summer pristine data indicate that primary biogenic and secondary organic aerosol formation are quite strong particle sources in the Siberian taiga. The summer seasons 2007-2008 were dominated by an Aitken mode around 80 nm size, whereas the summer 2009 with prevailing easterly winds produced particles in the accumulation mode around 200 nm size. We found these differences to be mainly related to air temperature, through its effect on the production rates of biogenic volatile organic compounds (VOC) precursor gases. In winter, the particle size distribution peaked at 160 nm, and the footprint of clean background air was characteristic for aged particles from anthropogenic sources at great distances from ZOTTO and diluted biofuel burning emissions from domestic heating. The wintertime polluted air originates mainly from large cities south and southwest of the site; these particles have a dominant mode around 100 nm, and the ΔBCe / ΔCO ratio of 7-11 ng m-3 ppb-1 suggests dominant contributions from coal and biofuel burning for heating. During summer, anthropogenic emissions are the dominant contributor to the pollution particles at ZOTTO, while only 12% of the polluted events are classified as biomass-burning-dominated, but then often associated with extremely high CO concentrations and aerosol absorption coefficients. Two biomass-burning case studies revealed different ΔBCe / ΔCO ratios from different fire types, with the agricultural fires in April~2008 yielding a very high ratio of 21 ng m-3 ppb-1. Overall, we find that anthropogenic sources dominate the aerosol population at ZOTTO most of the time, even during nominally clean episodes in winter, and that near-pristine conditions are encountered only in the growing season and then only episodically.
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NASA Technical Reports Server (NTRS)
Ivana, Babic; Maja, Mucko; Ivica, Vilibic; Hrvoje, Mihanovic; Reffaella, Casotti; Zrinka, Ljubesic; Ivona, Cetinic; Cecilia, Balestra; Ines, Petric; Suncica, Bosak;
2018-01-01
Bacteria are the most important microorganisms in the world oceans, accounting for up to 75% of the total biomass. They are responsible for fundamental biogeochemical processes and therefore often used as ecological indicators. In this study, bacteria were quantified by flow cytometry and their diversity assessed by High Throughput Sequencing (HTS) in the southern Adriatic Sea. The most abundant bacterial groups were also quantified by qPCR. The samples were collected from the surface to the seabed over a total of 16 different depths at four stations during the late winter BIOTA (BIO-Tracing Adriatic water masses) cruise conducted in March 2016. The investigated area showed unusual water mass properties and was characterized by a shallow mixed layer, which differed from the usual winter convection conditions, typical of middle-altitude ecosystems and important for the seasonal picoplankton dynamics of this area. Heterotrophic bacteria were separated into HNA (relative High Nucleic Acid content) and LNA (Low Nucleic Acid content) subpopulations with abundances up to 1.8×10(exp 5) and 8.8×10(exp 5) cells/mL, respectively. HNA dominated at offshore stations reaching their maximum at depths below the euphotic zone. The bacterial community was dominated by Alphaproteobacteria, accounting for greater than 40% of the total sequence reads and were mainly represented by the SAR11 clade (90.84%), followed by Marinimicrobia (18% of the total sequence reads), mainly represented by clade SAR406 (8.44%). Distinctive bacterial groups were found in the euphotic layer (Bacteroidetes and Actinobacteria) and aphotic layer samples (Deltaproteobacteria, Marinimicrobia, Chloroflexi, Acidobacteria and Planctomycetes). Results of the qPCR analyses further confirmed HTS results with highest abundances obtained for Alphaproteobacteria, followed by Gammaproteobacteria and Bacteroidetes. The adopted multiple approach, combining different molecular tools, critically supported by optics and flow cytometry, reveal changes in the bacterial assemblages during the unusual thermohaline conditions observed in 2016 in the southern Adriatic Sea.
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NASA Astrophysics Data System (ADS)
Persaud, E.; Levison, J.; MacRitchie, S.
2017-12-01
An understanding of temporal and spatial variations in groundwater response to conditions of changing climate is necessary to assess potential impacts on ecological functioning and human activities within a watershed. In particular, long term monitoring and site characterization studies can play an important role in the development of improved water management practices and the identification of potential climate change adaptation strategies. This research aims to provide an improved understanding of the physical cycling of groundwater, including surface water interactions, in a setting that is typical to that encountered in the Great Lakes Basin. The area of interest for this study is the Upper Parkhill Watershed in southwestern Ontario, Canada (jurisdiction of the Ausable-Bayfield Conservation Authority). This agriculturally dominated watershed, with surficial deposits of predominantly low permeability till, features an Integrated Water and Climate Monitoring Station on Parkhill Creek which has been collecting continuous data since 2012 describing meteorological conditions, surface water, groundwater, and soil properties (e.g. soil moisture, groundwater levels, and surface water stage/discharge etc.). Additional site characterization activities include hydraulic testing (e.g. slug tests and in-stream seepage meter testing), pedological studies as well as water sampling of natural groundwater tracers (electrical conductivity and 222-Radon), stable isotopes (18O and 2H), and tritium to identify locations of groundwater inflow and to examine water origin and age, respectively. The collected data will be used to develop an improved hydrogeological conceptual model and assess groundwater dynamics in relation to historical and potential future climate variability (e.g. sensitivity of groundwater recharge to temperature, timing and amount of precipitation, and evapotranspiration). It is anticipated that watershed similarities, such as those related to geology and land use, will allow outcomes of this investigation to be transferrable to other regions in the province undergoing similar stresses.
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2016-01-01
Through the combination of reaction kinetics (both stoichiometric and catalytic), solution- and solid-state characterization of arylpalladium(II) arylsilanolates, and computational analysis, the intermediacy of covalent adducts containing Si–O–Pd linkages in the cross-coupling reactions of arylsilanolates has been unambiguously established. Two mechanistically distinct pathways have been demonstrated: (1) transmetalation via a neutral 8-Si-4 intermediate that dominates in the absence of free silanolate (i.e., stoichiometric reactions of arylpalladium(II) arylsilanolate complexes), and (2) transmetalation via an anionic 10-Si-5 intermediate that dominates in the cross-coupling under catalytic conditions (i.e., in the presence of free silanolate). Arylpalladium(II) arylsilanolate complexes bearing various phosphine ligands have been isolated, fully characterized, and evaluated for their kinetic competence under thermal (stoichiometric) and anionic (catalytic) conditions. Comparison of the rates for thermal and anionic activation suggested, but did not prove, that intermediates containing the Si–O–Pd linkage were involved in the cross-coupling process. The isolation of a coordinatively unsaturated, T-shaped arylpalladium(II) arylsilanolate complex ligated with t-Bu3P allowed the unambiguous demonstration of the operation of both pathways involving 8-Si-4 and 10-Si-5 intermediates. Three kinetic regimes were identified: (1) with 0.5–1.0 equiv of added silanolate (with respect to arylpalladium bromide), thermal transmetalation via a neutral 8-Si-4 intermediate; (2) with 1.0–5.0 equiv of added silanolate, activated transmetalation via an anionic 10-Si-5 intermediate; and (3) with >5.0 equiv of added silanolate, concentration-independent (saturation) activated transmetalation via an anionic 10-Si-5 intermediate. Transition states for the intramolecular transmetalation of neutral (8-Si-4) and anionic (10-Si-5) intermediates have been located computationally, and the anionic pathway is favored by 1.8 kcal/mol. The energies of all intermediates and transition states are highly dependent on the configuration around the palladium atom. PMID:25945516
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NASA Astrophysics Data System (ADS)
Bertoni, E.; Bertello, L.; Capotondi, L.; Bergami, C.; Giglio, F.; Ravaioli, M.; Rossi, C.; Ferretti, A.
2012-04-01
This study, present data on benthic foraminiferal assemblages from four box cores collected in different areas of the Ross Sea during the 2005 oceanographic cruise in the framework of the Italian Antarctic Research National Programme (PNRA). Based on magnetic susceptibility, biosiliceous content, and micropaleontological analysis, the sediment cores provide a record of glacial retreat and Holocene environmental changes in the Ross Sea during the last 11 kyr BP. Sediment lithologies range between diamicton to surficial diatomaceous mud, the intermediate levels being glacial-marine sediment. The sedimentary sections include diatomaceous glacial-marine deposit over transitional (proximal grounding zone) glacial-marine sediment. The study revealed that the Ross Sea contains typical Antarctic foraminifera fauna with the dominance of agglutinated taxa. Relatively elevated abundances, richness and diversity were common in the northernmost site, where the water column was characterized by relatively warmer intermediate waters and by the presence of the colder High Salinity Shelf Water (HSSW) occupying the deepest part of the basin. Here, the assemblage was dominated by Miliammina arenacea and the more abundant species were Trochammina quadricamerata and Lagenammina difflugiformis. In the southernmost site and in the eastern Ross Sea, richness and diversity were low and the most significant species were Trochammina sp., and Reophax sp. M. arenacea was ubiquitous in all the samples and sites, confirming its tolerance to cold corrosive bottom waters and salinity fluctuations as well as its uniquely high preservation potential. Moreover, elevated abundances, richness and diversity were common in the upper portion of the core which represents the youngest climatic phase characterized by the presence of some calcareous specimens too. This may indicate a deeper Carbonate Compensation Depth, probably due to relatively stable and warmer environmental conditions. Results document that diversity of benthic foraminifera, number of specimens and variations in test morphology are related to regional differences in water properties (temperature, salinity, carbonate chemistry).
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Establishment and characterization of a novel murine model of pancreatic cancer cachexia.
Michaelis, Katherine A; Zhu, Xinxia; Burfeind, Kevin G; Krasnow, Stephanie M; Levasseur, Peter R; Morgan, Terry K; Marks, Daniel L
2017-10-01
Cachexia is a complex metabolic and behavioural syndrome lacking effective therapies. Pancreatic ductal adenocarcinoma (PDAC) is one of the most important conditions associated with cachexia, with >80% of PDAC patients suffering from the condition. To establish the cardinal features of a murine model of PDAC-associated cachexia, we characterized the effects of implanting a pancreatic tumour cell line from a syngeneic C57BL/6 KRAS G12D P53 R172H Pdx-Cre +/+ (KPC) mouse. Male and female C57BL/6 mice were inoculated subcutaneously, intraperitoneally, or orthotopically with KPC tumour cells. We performed rigorous phenotypic, metabolic, and behavioural analysis of animals over the course of tumour development. All routes of administration produced rapidly growing tumours histologically consistent with moderate to poorly differentiated PDAC. The phenotype of this model was dependent on route of administration, with orthotopic and intraperitoneal implantation inducing more severe cachexia than subcutaneous implantation. KPC tumour growth decreased food intake, decreased adiposity and lean body mass, and decreased locomotor activity. Muscle catabolism was observed in both skeletal and cardiac muscles, but the dominant catabolic pathway differed between these tissues. The wasting syndrome in this model was accompanied by hypothalamic inflammation, progressively decreasing brown and white adipose tissue uncoupling protein 1 (Ucp1) expression, and increased peripheral inflammation. Haematological and endocrine abnormalities included neutrophil-dominant leukocytosis and anaemia, and decreased serum testosterone. Syngeneic KPC allografts are a robust model for studying cachexia, which recapitulate key features of the PDAC disease process and induce a wide array of cachexia manifestations. This model is therefore ideally suited for future studies exploring the physiological systems involved in cachexia and for preclinical studies of novel therapies. © 2017 The Authors. Journal of Cachexia, Sarcopenia and Muscle published by John Wiley & Sons Ltd on behalf of the Society on Sarcopenia, Cachexia and Wasting Disorders.
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NASA Astrophysics Data System (ADS)
Benard, L. D.; Tuah, P. M.; Suadin, E. G.; Jamian, N.
2015-04-01
The distribution of hydrocarbon-utilizing bacterial may vary between surface and subsurface of the seawater. One of the identified contributors is the Total Petroleum Hydrocarbon. The isolation and characterization of bacteria using Direct and Enrichment techniques helps in identifying dominant bacterial populations in seawater of Mantanani Island, Kota Belud, Sabah, potential of further investigation as hydrocarbon degrader. Crude oil (5% v/v) was added as the carbon source for bacteria in Enrichment technique. For surface seawater, the highest population of bacteria identified for both Direct and Enrichment technique were 2.60 × 107 CFU/mL and 3.84 × 106 CFU/mL respectively. Meanwhile, for subsurface seawater, the highest population of bacteria identified for both Direct and Enrichment technique were 5.21 × 106 CFU/mL and 8.99 × 107 CFU/mL respectively. Dominant species in surface seawater were characterized as Marinobacter hydrocarbonoclasticus-RMSF-C1 and RMSF-C2 and Alcanivorax borkumensis-RMSF-C3, RMSF-C4 and RMSF-C5. As for subsurface seawater, dominant species were characterized as Pseudomonas luteola-SSBR-W1, Burkholderia cepacia-SSBR-C1, Rhizobium radiobacter- SSBR-C3 and Leuconostoc-cremois -SSBR-C4.
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Vanadium Geochemistry of Oil Sands Fluid Petroleum Coke.
Nesbitt, Jake A; Lindsay, Matthew B J
2017-03-07
Vanadium has previously been linked to elevated toxicity of leachates derived from oil sands petroleum coke. However, geochemical controls on V mobility within coke deposits remain poorly constrained. Detailed examinations of porewater and solid-phase V geochemistry were therefore performed on oil sands fluid petroleum coke deposits in Alberta, Canada. Sample collection focused on both active and reclaimed deposits, which contained more than 3 × 10 7 m 3 of fluid petroleum coke. Dissolved V concentrations were highest (up to 3.0 mg L -1 ) immediately below the water table but decreased rapidly with increasing depth. This trend corresponded to a transition from mildly acidic (pH 6-7) and oxic conditions to mildly alkaline (pH 7-8.5) and anoxic conditions. Scanning electron microscopy (SEM), electron microprobe analysis (EMPA), and micro-X-ray fluorescence (μXRF) mapping revealed coke particles exhibited an internal structure characterized by successive concentric layers. The outer margins of these layers were characterized by elevated V, Fe, Si, and Al concentrations, indicating the presence of inorganic phases. Micro-X-ray absorption near-edge structure (μXANES) spectroscopy revealed that V speciation was dominated by V(IV) porphyrins except at outer margins of layers, where octahedrally coordinated V(III) was a major component. Minor to trace V(V) was also detected within fluid petroleum coke particles.
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[Gene therapy for inherited retinal dystrophies].
Côco, Monique; Han, Sang Won; Sallum, Juliana Maria Ferraz
2009-01-01
The inherited retinal dystrophies comprise a large number of disorders characterized by a slow and progressive retinal degeneration. They are the result of mutations in genes that express in either the photoreceptor cells or the retinal pigment epithelium. The mode of inheritance can be autosomal dominant, autosomal recessive, X linked recessive, digenic or mitochondrial DNA inherited. At the moment, there is no treatment for these conditions and the patients can expect a progressive loss of vision. Accurate genetic counseling and support for rehabilitation are indicated. Research into the molecular and genetic basis of disease is continually expanding and improving the prospects for rational treatments. In this way, gene therapy, defined as the introduction of exogenous genetic material into human cells for therapeutic purposes, may ultimately offer the greatest treatment for the inherited retinal dystrophies. The eye is an attractive target for gene therapy because of its accessibility, immune privilege and translucent media. A number of retinal diseases affecting the eye have known gene defects. Besides, there is a well characterized animal model for many of these conditions. Proposals for clinical trials of gene therapy for inherited retinal degenerations owing to defects in the gene RPE65, have recently received ethical approval and the obtained preliminary results brought large prospects in the improvement on patient's quality of life.
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Carbonate petrography of the Burlington/Keokuk contact in southeastern Iowa
DOE Office of Scientific and Technical Information (OSTI.GOV)
Maguire, T.D.
1993-02-01
The top of the Burlington Formation (Mississippian, Osagean Series), a dominantly skeletal packstone/grainstone unit in southeastern Iowa, is defined by a regionally persistent bone bed horizon and is overlain by the lower Keokuk Formation, a dominant skeletal wackestone and chert. A thin gray-green shale at some localities at the contact is interpreted as a condensed section that corresponds to a deepening event during the beginning of the Keokuk deposition. Both units represent similar carbonate bank settings deposited during rapid, uninterrupted progradation of carbonate sediments during changing sea levels. The upper Burlington facies consists dominantly of crinoids and has the highestmore » biotic diversity (i.e., bryozoan, corals, and brachiopods) during the most open marine conditions. In thin section most crinoid grains show moderate abrasion and some evidence of early fragmentation. Frequent winnowing during storm events resulted in relatively clean packed calcarenite fabrics. Both formations acted as a single paragenetic unit during the induration process, characterized by multiple episodes of cementation, dolomitization, and compaction. Crinoidal syntaxial overgrowths and crushed bryozoan matrix make up most of the packstone/grainstone fabrics in both formations. The presence of mashed bryozoans suggests that some compaction may have preceded complete stabilization of the sedimentary mass by crinoidal syntaxial overgrowth cements. Staining revealed at least three generations of syntaxial overgrowth cements which probably formed in a meteoric phreatic environment during a relatively short period of geologic time.« less
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Role of tree size in moist tropical forest carbon cycling and water deficit responses.
Meakem, Victoria; Tepley, Alan J; Gonzalez-Akre, Erika B; Herrmann, Valentine; Muller-Landau, Helene C; Wright, S Joseph; Hubbell, Stephen P; Condit, Richard; Anderson-Teixeira, Kristina J
2017-06-06
Drought disproportionately affects larger trees in tropical forests, but implications for forest composition and carbon (C) cycling in relation to dry season intensity remain poorly understood. In order to characterize how C cycling is shaped by tree size and drought adaptations and how these patterns relate to spatial and temporal variation in water deficit, we analyze data from three forest dynamics plots spanning a moisture gradient in Panama that have experienced El Niño droughts. At all sites, aboveground C cycle contributions peaked below 50-cm stem diameter, with stems ≥ 50 cm accounting for on average 59% of live aboveground biomass, 45% of woody productivity and 49% of woody mortality. The dominance of drought-avoidance strategies increased interactively with stem diameter and dry season intensity. Although size-related C cycle contributions did not vary systematically across the moisture gradient under nondrought conditions, woody mortality of larger trees was disproportionately elevated under El Niño drought stress. Thus, large (> 50 cm) stems, which strongly mediate but do not necessarily dominate C cycling, have drought adaptations that compensate for their more challenging hydraulic environment, particularly in drier climates. However, these adaptations do not fully buffer the effects of severe drought, and increased large tree mortality dominates ecosystem-level drought responses. © 2017 Smithsonian. Institute New Phytologist © 2017 New Phytologist Trust.
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Shi, Qing; Stell, William K.
2013-01-01
Background Through adaptation, animals can function visually under an extremely broad range of light intensities. Light adaptation starts in the retina, through shifts in photoreceptor sensitivity and kinetics plus modulation of visual processing in retinal circuits. Although considerable research has been conducted on retinal adaptation in nocturnal species with rod-dominated retinas, such as the mouse, little is known about how cone-dominated avian retinas adapt to changes in mean light intensity. Methodology/Principal Findings We used the optokinetic response to characterize contrast sensitivity (CS) in the chick retina as a function of spatial frequency and temporal frequency at different mean light intensities. We found that: 1) daytime, cone-driven CS was tuned to spatial frequency; 2) nighttime, presumably rod-driven CS was tuned to temporal frequency and spatial frequency; 3) daytime, presumably cone-driven CS at threshold intensity was invariant with temporal and spatial frequency; and 4) daytime photopic CS was invariant with clock time. Conclusion/Significance Light- and dark-adaptational changes in CS were investigated comprehensively for the first time in the cone-dominated retina of an avian, diurnal species. The chick retina, like the mouse retina, adapts by using a “day/night” or “cone/rod” switch in tuning preference during changes in lighting conditions. The chick optokinetic response is an attractive model for noninvasive, behavioral studies of adaptation in retinal circuitry in health and disease. PMID:24098693
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NASA Technical Reports Server (NTRS)
Cowings, P. S.
1977-01-01
Experiments were performed on 24 men and women (aged 20-27 yr) in three equal groups who were taught to control their own heart rates by autogenic training and biofeedback under dark and sound-isolated conditions. Group I was parasympathetic dominant, group II was sympathetic dominant, and group III consisted of parasympathetic-dominant subjects and controls who received only biofeedback of their own heart rates. The results corroborate three hypotheses: (1) subjects with para-sympathetic-dominant autonomic profiles perform in a way that is both qualitatively and quantitatively different from subjects with sympathetic-dominant autonomic profiles; (2) tests of interindividual variability yield data relevant to individual performance in visceral learning tasks; and (3) the combined use of autogenic training, biofeedback, and verbal feedback is suitable for conditioning large stable autonomic responses in humans.
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Kumar, Manoj; van Elsas, Jan Dirk; Nissinen, Riitta
2017-01-01
Arctic and alpine biomes are most often strongly nitrogen-limited, and hence biological nitrogen fixation is a strong driver of these ecosystems. Both biomes are characterized by low temperatures and short growing seasons, but they differ in seasonality of solar radiation and in soil water balance due to underlying permafrost in the Arctic. Arcto-alpine plant species are well-adapted to the low temperatures that prevail in their habitats, and plant growth is mainly limited by the availability of nutrients, in particular nitrogen, due to slow mineralization. Nitrogen fixing bacteria are likely important for plant growth in these habitats, but very little is known of these bacteria or forces shaping their communities. In this study, we characterized the potential nitrogen fixing bacterial (PNFB) communities associated with two arcto-alpine pioneer plant species, Oxyria digyna (mountain sorrel) and Saxifraga oppositifolia (blue saxifrage), in three climate regions. Both of these plants readily colonize low nutrient mineral soils. Our goal was to investigate how climate (region) and, on the other hand, host plant and plant species shape these communities. To our knowledge, this is the first comprehensive study describing PNFB communities associated with pioneer plants in different arcto-alpine biomes. Replicate samples were taken from two arctic regions, Kilpisjärvi and Ny-Ålesund, and one alpine region, Mayrhofen. In these, the PNFB communities in the bulk and rhizosphere soils and the plant endospheres were characterized by nifH -targeted PCR and massive parallel sequencing. The data revealed strong effects of climatic region on the dominating nitrogen fixers. Specifically, nifH sequences related to Geobacter (δ- Proteobacteria ) were present in high relative abundances in the nitrogen-fixing communities in the Mayrhofen and Kilpisjärvi regions, while members of the Clostridiales prevailed in the Kilpisjärvi and Ny-Ålesund regions. The bulk and rhizosphere soil as well as the endosphere communities in the Mayrhofen region were all characterized by high relative abundances of nifH sequences related to Geobacter . In contrast, the endosphere and soil (bulk or rhizosphere soil) communities in the High Arctic were highly divergent: endosphere communities in the arctic regions were shaped by Clostridium spp., while nifH sequences representing δ- Proteobacteria , β- Proteobacteria, Cyanobacteria (in Ny-Ålesund), and Verrucomicrobia (in Kilpisjärvi) dominated the soil communities. Interestingly, the major PNFB genera identified in this study have been previously identified as members of conserved core microbiomes in the endospheres and seeds of these plants by 16S rRNA gene based analyses combined with bacterial isolation, suggesting a very tight interaction between diazotrophic bacteria and these arctic pioneer plants. Overall, anaerobic bacterial taxa dominated the PNFB communities of the endospheres and rhizospheres of the two plant species in all study sites. This could indicate anoxic conditions in and around plant roots at the time of sampling (early growth season), created by melting snow and underlying permafrost.
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Dorer, Conrad; Vogt, Carsten; Neu, Thomas R; Stryhanyuk, Hryhoriy; Richnow, Hans-Hermann
2016-04-01
Ethylbenzene and toluene degradation under nitrate-, Mn(IV)-, or Fe(III)-reducing conditions was investigated by compound specific stable isotope analysis (CSIA) using three model cultures (Aromatoleum aromaticum EbN1, Georgfuchsia toluolica G5G6, and a Azoarcus-dominated mixed culture). Systematically lower isotope enrichment factors for carbon and hydrogen were observed for particulate Mn(IV). The increasing diffusion distances of toluene or ethylbenzene to the solid Mn(IV) most likely caused limited bioavailability and hence resulted in the observed masking effect. The data suggests further ethylbenzene hydroxylation by ethylbenzene dehydrogenase (EBDH) and toluene activation by benzylsuccinate synthase (BSS) as initial activation steps. Notably, significantly different values in dual isotope analysis were detected for toluene degradation by G. toluolica under the three studied redox conditions, suggesting variations in the enzymatic transition state depending on the available TEA. The results indicate that two-dimensional CSIA has significant potential to assess anaerobic biodegradation of ethylbenzene and toluene at contaminated sites. Copyright © 2015 Elsevier Ltd. All rights reserved.
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Su, Jun Feng; Luo, Xian Xin; Wei, Li; Ma, Fang; Zheng, Sheng Chen; Shao, Si Cheng
2016-07-01
In this study, Mn(II) as electron donor was tested for the effects on denitrification in the MBBR under the conditions of initial nitrate concentration (10mgL(-1), 30mgL(-1), 50mgL(-1)), pH (5, 6, 7) and hydraulic retention time (HRT) (4h, 8h, 12h) which conducted by response surface methodology (RSM), the results demonstrated that the highest nitrate removal efficiency was occurred under the conditions of initial nitrate concentration of 47.64mgL(-1), HRT of 11.96h and pH 5.21. Analysis of SEM and flow cytometry suggested that microorganisms were immobilized on the Yu Long plastic carrier media successfully before the reactor began to operate. Furthermore, high-throughput sequencing was employed to characterize and compare the community compositions and structures of MBBR under the optimum conditions, the results showed that Pseudomonas sp. SZF15 was the dominant contributor for effective removal of nitrate in the MBBR. Copyright © 2016 Elsevier Ltd. All rights reserved.
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Toward a Physical Characterization of Raindrop Collision Outcome Regimes
NASA Technical Reports Server (NTRS)
Testik, F. Y.; Barros, Ana P.; Bilven, Francis L.
2011-01-01
A comprehensive raindrop collision outcome regime diagram that delineates the physical conditions associated with the outcome regimes (i.e., bounce, coalescence, and different breakup types) of binary raindrop collisions is proposed. The proposed diagram builds on a theoretical regime diagram defined in the phase space of collision Weber numbers We and the drop diameter ratio p by including critical angle of impact considerations. In this study, the theoretical regime diagram is first evaluated against a comprehensive dataset for drop collision experiments representative of raindrop collisions in nature. Subsequently, the theoretical regime diagram is modified to explicitly describe the dominant regimes of raindrop interactions in (We, p) by delineating the physical conditions necessary for the occurrence of distinct types of collision-induced breakup (neck/filament, sheet, disk, and crown breakups) based on critical angle of impact consideration. Crown breakup is a subtype of disk breakup for lower collision kinetic energy that presents distinctive morphology. Finally, the experimental results are analyzed in the context of the comprehensive collision regime diagram, and conditional probabilities that can be used in the parameterization of breakup kernels in stochastic models of raindrop dynamics are provided.
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Continuum calculations of continental deformation in transcurrent environments
NASA Technical Reports Server (NTRS)
Sonder, L. J.; England, P. C.; Houseman, G. A.
1986-01-01
A thin viscous sheet approximation is used to investigate continental deformation near a strike-slip boundary. The vertically averaged velocity field is calculated for a medium characterized by a power law rheology with stress exponent n. Driving stresses include those applied along boundaries of the sheet and those arising from buoyancy forces related to lateral differences in crustal thickness. Exact and approximate analytic solutions for a region with a sinusoidal strike-slip boundary condition are compared with solutions for more geologically relevant boundary conditions obtained using a finite element technique. The across-strike length scale of the deformation is approximately 1/4pi x sq rt n times the dominant wavelength of the imposed strike-slip boundary condition for both the analytic and the numerical solutions; this result is consistent with length scales observed in continental regions of large-scale transcurrent faulting. An approximate, linear relationship between displacement and rotation is found that depends only on the deformation length scale and the rheology. Calculated displacements, finite rotations, and distribution of crustal thicknesses are consistent with those observed in the region of the Pacific-North America plate boundary in California.
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Nestlerode, Janet A; Hansen, Virginia D; Teague, Aarin; Harwell, Matthew C
2014-06-01
A multi-level coastal wetland assessment strategy was applied to wetlands in the northern Gulf of Mexico (GOM) to evaluate the feasibility of this approach for a broad national scale wetland condition assessment (US Environmental Protection Agency's National Wetlands Condition Assessment). Landscape-scale assessment indicators (tier 1) were developed and applied at the sub-watershed (12-digit hydrologic unit code (HUC)) level within the GOM coastal wetland sample frame with scores calculated using land-use maps and geographic information system. Rapid assessment protocols (tier 2), using a combination of data analysis and field work, evaluated metrics associated with landscape context, hydrology, physical structure, and biological structure. Intensive site monitoring (tier 3) included measures of soil chemistry and composition, water column and pore-water chemistry, and dominant macrophyte community composition and tissue chemistry. Relationships within and among assessment levels were evaluated using multivariate analyses with few significant correlations found. More detailed measures of hydrology, soils, and macrophyte species composition from sites across a known condition gradient, in conjunction with validation of standardized rapid assessment method, may be necessary to fully characterize coastal wetlands across the region.
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Diversity of endophytic fungi of Myricaria laxiflora grown under pre- and post-flooding conditions.
Tian, W; Bi, Y H; Zeng, W; Jiang, W; Xue, Y H; Wang, G X; Liu, S P
2015-09-09
Myricaria laxiflora is distributed along the riverbanks of the Yangtze River valley. The Three Gorges Dam has dramatically changed the habitat of M. laxiflora, which has evolved to develop increased resistance to flooding stress. In order to elucidate the relationship between plant endophytic fungi and flooding stress, we isolated and taxonomically characterized the endophytic fungi of M. laxiflora. One hundred and sixty-three fungi were isolated from healthy stems, leaves and roots of M. laxiflora grown under pre- and post-flooding conditions. Culture and isolation were carried out under aerobic and anaerobic conditions. Based on internal transcribed spacer sequence analysis and morphological characteristics, the isolates exhibited abundant biodiversity; they were classified into 5 subphyla, 7 classes, 12 orders, 17 families, and 26 genera. Dominant endophytes varied between pre- and post-flooding plants, among different plant tissues, and between aerobic and anaerobic culture conditions. Aspergillus and Alternaria accounted for more than 55% of all isolates. Although the number of isolates from post-flooding plants was greater, endophytes from pre-flooding plants were more diverse and abundant. Endophytes were distributed preferentially in particular tissues; this affinity was constrained by both the host habitat and the oxygen availability of the host.
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NASA Astrophysics Data System (ADS)
Rudolf, R.; Anzel, I.; Gusel, L.; Stamenkovi, D.; Todorovi, A.; Colic, M.
2010-12-01
Microstructures of two high noble experimental Au-Pt alloys were compared before and after conditioning for biocompatibility, in order to identify phases and microelements responsible for the alloys' corrosive behaviour. Microstructural characterization was carried-out by optical and scanning electron microscopy, in addition to energy dispersive X-ray analysis. X-ray diffraction was applied to determine the phases' composition and their contribution in the alloys. Additionally, simultaneous thermal analysis was used to identify the temperatures of phase transformations. An overall assessment before conditioning showed that Au-Pt I is a two-phase alloy containing a dominant Au-rich α1 phase and a minor Pt-rich α2 phase, while the Au-Pt II alloy contains in addition three minor phases: AuZn3, Pt3Zn and Au1.4Zn0.52. The highest content of Zn (up to 6.76 wt.%) was detected in the Pt3Zn phase. After RPMI cell culture medium conditioning, the Pt3Zn and AuZn3 phases disappeared, suggesting that they are predominantly responsible for Zn loss and the lower corrosive stability of the Au-Pt II alloy.
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Moore, J.N.; Allis, R.G.; Nemcok, M.; Powell, T.S.; Bruton, C.J.; Wannamaker, P.E.; Raharjo, I.B.; Norman, D.I.
2008-01-01
Temperature and pressure surveys, fluid samples, and petrologic analyses of rock samples from deep drill holes at the Karaha - Telaga Bodas geothermal field on the volcanic ridge extending northward from Galunggung Volcano, West Java, have provided a unique opportunity to characterize the evolution of an active volcano-hosted geothermal system. Wells up to 3 km in depth have encountered temperatures as high as 353??C and a weakly altered granodiorite that intruded to within 2 to 3 km of the surface. The intrusion is shallowest beneath the southern end of the field where an acid lake overlies a nearly vertical low resistivity structure (<10 ohm-m) defined by magnetotelluric measurements. This structure is interpreted to represent a vapor-dominated chimney that provides a pathway to the surface for magmatic gases. Four distinct hydrothermal mineral assemblages document the evolution of the geothermal system and the transition from liquid- to vapor-dominated conditions. The earliest assemblage represents the initial liquid-dominated system generated during emplacement of the granodiorite between 5910 ?? 76 and 4200 ?? 150 y BP. Tourmaline, biotite, actinolite, epidote and clay minerals were deposited contemporaneously at progressively greater distances from the intrusive contact (assemblage 1). At 4200 ?? 150 y BP, flank collapse and the formation of the volcano's crater, Kawah Galunggung, resulted in catastrophic decompression and boiling of the hydrothermal fluids. This event initiated development of the modern vapor-dominated regime. Chalcedony and then quartz were deposited as the early low salinity liquids boiled (assemblage 2). Both vapor- and liquid-rich fluid inclusions were trapped in the quartz crystals. Liquid-rich fluid inclusions from the southern part of the field record salinities ranging from 0 to 26 weight percent NaCl- CaCl2 equivalent and locally contain fluorite daughter crystals. We suggest, based on temperature-salinity relationships and evidence of boiling, that these fluids were progressively concentrated as steam was lost from the system. However, mixing with fluids derived from the underlying intrusion or generated during the formation of acid SO4 water on the vapor-dominated chimney margins could have contributed to the observed salinities. As pressures declined, CO2- and SO4-rich steam-heated water drained downward, depositing anhydrite and calcite (assemblage 3) in the fractures, limiting further recharge. Fluid inclusions with salinities up to 31 weight percent NaCl equivalent were trapped in these minerals as the descending water vaporized. The final assemblage is represented by precipitates of NaCl, KCl and FeClx deposited on rock surfaces in portions of the vapor-dominated zone that boiled dry. Vapor-dominated conditions extend over a distance of at least 10 km and to depths below sea level. Deep wells drilled into the underlying liquid-dominated reservoir in the northern and central part of the volcanic ridge produce low salinity fluids representing recent recharge of meteoric and steam-heated water. The evolution of volcanic-hosted vapor-dominated geothermal systems can be described by a five stage model. Stage 1 involves the formation of an over-pressured liquid-dominated geothermal system soon after magmatic intrusion. In Stages 2 and 3, pressures progressively decrease, and a curtain of steam-heated water surrounding a magmatic vapor-dominated chimney at 350??C and 14 ?? 2 MPa develops. The relatively low pressure near the base of the chimney causes liquid inflow adjacent to the intrusion and the development of a secondary marginal vapor-dominated zone. In Stage 4, the magmatic vapor discharge from the intrusion becomes small, vapor pressure declines, and the secondary vapor-dominated zone expands above the intrusion. In Stage 5, the vapor-dominated zone floods because heat from the intrusion is insufficient to boil all liquid inflow. A more common, liquid-dominated volcanic-hosted system the
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Seasonal and spatial patterns in diurnal cycles in streamflow in the western United States
Lundquist, J.D.; Cayan, D.R.
2002-01-01
The diurnal cycle in streamflow constitutes a significant part of the variability in many rivers in the western United States and can be used to understand some of the dominant processes affecting the water balance of a given river basin. Rivers in which water is added diurnally, as in snowmelt, and rivers in which water is removed diurnally, as in evapotranspiration and infiltration, exhibit substantial differences in the timing, relative magnitude, and shape of their diurnal flow variations. Snowmelt-dominated rivers achieve their highest sustained flow and largest diurnal fluctuations during the spring melt season. These fluctuations are characterized by sharp rises and gradual declines in discharge each day. In large snowmelt-dominated basins, at the end of the melt season, the hour of maximum discharge shifts to later in the day as the snow line retreats to higher elevations. Many evapotranspiration/infiltration-dominated rivers in the western states achieve their highest sustained flows during the winter rainy season but exhibit their strongest diurnal cycles during summer months, when discharge is low, and the diurnal fluctuations compose a large percentage of the total flow. In contrast to snowmelt-dominated rivers, the maximum discharge in evapotranspiration/infiltration-dominated rivers occurs consistently in the morning throughout the summer. In these rivers, diurnal changes are characterized by a gradual rise and sharp decline each day.
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Macroalgal herbivory on recovering versus degrading coral reefs
NASA Astrophysics Data System (ADS)
Chong-Seng, K. M.; Nash, K. L.; Bellwood, D. R.; Graham, N. A. J.
2014-06-01
Macroalgal-feeding fishes are considered to be a key functional group on coral reefs due to their role in preventing phase shifts from coral to macroalgal dominance, and potentially reversing the shift should it occur. However, assessments of macroalgal herbivory using bioassay experiments are primarily from systems with relatively high coral cover. This raises the question of whether continued functionality can be ensured in degraded systems. It is clearly important to determine whether the species that remove macroalgae on coral-dominated reefs will still be present and performing significant algal removal on macroalgal-dominated reefs. We compared the identity and effectiveness of macroalgal-feeding fishes on reefs in two conditions post-disturbance—those regenerating with high live coral cover (20-46 %) and those degrading with high macroalgal cover (57-82 %). Using filmed Sargassum bioassays, we found significantly different Sargassum biomass loss between the two conditions; mean assay weight loss due to herbivory was 27.9 ± 4.9 % on coral-dominated reefs and 2.2 ± 1.1 % on reefs with high macroalgal cover. However, once standardised for the availability of macroalgae on the reefs, the rates of removal were similar between the two reef conditions (4.8 ± 4.1 g m-2 h-1 on coral-dominated and 5.3 ± 2.1 g m-2 h-1 on macroalgal-dominated reefs). Interestingly, the Sargassum-assay consumer assemblages differed between reef conditions; nominally grazing herbivores, Siganus puelloides and Chlorurus sordidus, and the browser , Siganus sutor, dominated feeding on high coral cover reefs, whereas browsing herbivores, Naso elegans, Naso unicornis, and Leptoscarus vaigiensis, prevailed on macroalgal-dominated reefs. It appeared that macroalgal density in the surrounding habitat had a strong influence on the species driving the process of macroalgal removal. This suggests that although the function of macroalgal removal may continue, the species responsible may change with context, differing between systems that are regenerating versus degrading.
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Karapanagioti, Hrissi K.; Childs, Jeffrey; Sabatini, David A.
2001-01-01
Organic petrography has been proposed as a tool for characterizing the heterogeneous organic matter present in soil and sediment samples. A new simplified method is proposed as a quantitative means of interpreting observed sorption behavior for phenanthrene and different soils and sediments based on their organic petrographical characterization. This method is tested under singe solute conditions and at phenanthrene concentration of 1 μg/L. Since the opaque organic matter fraction dominates the sorption process, we propose that by quantifying this fraction one can interpret organic content normalized sorption distribution coefficient (Koc) values for a sample. While this method was developed and tested for various samples within the same aquifer, in the current study the method is validated for soil and sediment samples from different sites that cover a wide range of organic matter origin, age, and organic content. All 10 soil and sediment samples studied had log Koc values for the opaque particles between 5.6 and 6.8. This range of Koc values illustrates the heterogeneity of opaque particles between sites and geological formations and thus the need to characterize the opaque fraction of materials on a site-by-site basis.
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Molecular bases of diseases characterized by hypophosphatemia and phosphaturia: new understanding.
Ozono, Keiichi; Michigami, Toshimi; Namba, Noriyuki; Nakajima, Shigeo; Yamamoto, Takehisa
2006-01-01
Serum phosphate levels are regulated in both calcium-dependent and -independent fashions. Active vitamin D increases while PTH decreases serum phosphate levels in association with the elevation of serum calcium. On the other hand, a calcium-independent phosphaturic factor, historically called phosphatonin is believed to exert a physiological function based on findings in hereditary and tumor-induced diseases characterized by hypophosphatemia with normocalcemia. Among them, autosomal dominant hypophosphatemic rickets (ADHR) has contributed greatly to its elucidation because the gene responsible for ADHR encodes fibroblast growth factor 23 (FGF23) that has been found to have a phosphaturic effect. In addition, FGF23 has been proved to be involved in most cases of oncogenic osteomalacia and X-linked hypophosphatemic rickets that are also characterized by hypophosphatemia and normocalcemia. Moreover, familial tumoral calcinosis, which represents the metabolic mirror image of hypophosphatemic conditions, is caused by a loss-of-function mutation in the FGF23 gene in some patients. Very recently, hereditary hypophosphatemic rickets with hypercalciuria has been found to be caused by mutations in the SLC34A1 gene which encodes a type of sodium phosphate cotransporter. These findings may provide new strategies for treating patients with abnormal phosphate metabolism.
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Characteristics of particulate matter emissions from toy cars with electric motors.
Wang, Xiaofei; Williams, Brent J; Biswas, Pratim
2015-04-01
Aerosol emissions from toy cars with electric motors were characterized. Particle emission rates from the toy cars, as high as 7.47×10(7) particles/s, were measured. This emission rate is lower than other indoor sources such as smoking and cooking. The particles emitted from toy cars are generated from spark discharges inside the electric motors that power the toy cars. Size distribution measurements indicated that most particles were below 100 nm in diameter. Copper was the dominant inorganic species in these particles. By deploying aerosol mass spectrometers, high concentrations of particulate organic matter were also detected and characterized in detail. Several organic compounds were identified using a thermal desorption aerosol gas chromatography. The mass size distribution of particulate organic matter was bimodal. The formation mechanism of particulate organic matter from toy cars was elucidated. A possible new source of indoor air pollution, particles from electric motors in toy cars, was identified. This study characterized aerosol emissions from toy cars in detail. Most of these particles have a diameter less than 100 nm. Copper and some organics are the major components of these particles. Conditions that minimize these emissions were determined.
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Farías, María E; Rascovan, Nicolás; Toneatti, Diego M; Albarracín, Virginia H; Flores, María R; Poiré, Daniel G; Collavino, Mónica M; Aguilar, O Mario; Vazquez, Martin P; Polerecky, Lubos
2013-01-01
We describe stromatolites forming at an altitude of 3570 m at the shore of a volcanic lake Socompa, Argentinean Andes. The water at the site of stromatolites formation is alkaline, hypersaline, rich in inorganic nutrients, very rich in arsenic, and warm (20-24°C) due to a hydrothermal input. The stromatolites do not lithify, but form broad, rounded and low-domed bioherms dominated by diatom frustules and aragonite micro-crystals agglutinated by extracellular substances. In comparison to other modern stromatolites, they harbour an atypical microbial community characterized by highly abundant representatives of Deinococcus-Thermus, Rhodobacteraceae, Desulfobacterales and Spirochaetes. Additionally, a high proportion of the sequences that could not be classified at phylum level showed less than 80% identity to the best hit in the NCBI database, suggesting the presence of novel distant lineages. The primary production in the stromatolites is generally high and likely dominated by Microcoleus sp. Through negative phototaxis, the location of these cyanobacteria in the stromatolites is controlled by UV light, which greatly influences their photosynthetic activity. Diatoms, dominated by Amphora sp., are abundant in the anoxic, sulfidic and essentially dark parts of the stromatolites. Although their origin in the stromatolites is unclear, they are possibly an important source of anaerobically degraded organic matter that induces in situ aragonite precipitation. To the best of our knowledge, this is so far the highest altitude with documented actively forming stromatolites. Their generally rich, diverse and to a large extent novel microbial community likely harbours valuable genetic and proteomic reserves, and thus deserves active protection. Furthermore, since the stromatolites flourish in an environment characterized by a multitude of extremes, including high exposure to UV radiation, they can be an excellent model system for studying microbial adaptations under conditions that, at least in part, resemble those during the early phase of life evolution on Earth.
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Microbial Diversity in Soil Treatment Systems for Wastewater
NASA Astrophysics Data System (ADS)
Van Cuyk, S.; Spear, J.; Siegrist, R.; Pace, N.
2002-05-01
There is an increasing awareness and concern over land based wastewater system performance with respect to the removal of bacteria and virus. The goal of this work is to describe and identify the organismal composition of the microbiota in the applied wastewater effluent, the rich biomat that develops at the infiltrative surface, and in the soil percolate in order to aid in the understanding of bacterial and virus purification in soil treatment systems. The traditional reliance on pure culture techniques to describe microbiota is circumvented by the employment of a molecular approach. Microbial community characterization is underway based on cloning and sequencing of 16S rRNA genes for phylogenetic analyses, to determine the nature and quantity of microbiota that constitute these ecosystems. Knowledge of the organisms naturally present can influence the design and treatment capacity of these widely used land based systems. Laboratory, intermediate and field scale systems are currently under study. Since human pathogens are known to exist in sewage effluents, their removal in wastewater infiltration systems and within the underlying soil are in need of a more fundamental understanding. The relationship between design parameters and environmental conditions, including a microbial characterization, is essential for the prevention of contamination in groundwater sources. Preliminary results indicate the presence of uncultured organisms and phylogenetic kinds that had not been detected in these systems using other methods. Acinetobacter johnsonii and Acrobacter cryaerophilus were the two dominant species found in septic tank effluent, comprising 20% and 11% of the library respectively. In soil samples collected from the infiltrative surface of a column dosed with STE, there was no dominant bacterial species present. Percolate samples collected from the outflow of the column showed that a tuber borchii symbiont, a common soil microorganism, dominated the bacterial community of this sample (35% of the library). Additional work evaluating eukarya present is being conducted.
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Farías, María E.; Rascovan, Nicolás; Toneatti, Diego M.; Albarracín, Virginia H.; Flores, María R.; Poiré, Daniel G.; Collavino, Mónica M.; Aguilar, O. Mario; Vazquez, Martin P.; Polerecky, Lubos
2013-01-01
We describe stromatolites forming at an altitude of 3570 m at the shore of a volcanic lake Socompa, Argentinean Andes. The water at the site of stromatolites formation is alkaline, hypersaline, rich in inorganic nutrients, very rich in arsenic, and warm (20–24°C) due to a hydrothermal input. The stromatolites do not lithify, but form broad, rounded and low-domed bioherms dominated by diatom frustules and aragonite micro-crystals agglutinated by extracellular substances. In comparison to other modern stromatolites, they harbour an atypical microbial community characterized by highly abundant representatives of Deinococcus-Thermus, Rhodobacteraceae, Desulfobacterales and Spirochaetes. Additionally, a high proportion of the sequences that could not be classified at phylum level showed less than 80% identity to the best hit in the NCBI database, suggesting the presence of novel distant lineages. The primary production in the stromatolites is generally high and likely dominated by Microcoleus sp. Through negative phototaxis, the location of these cyanobacteria in the stromatolites is controlled by UV light, which greatly influences their photosynthetic activity. Diatoms, dominated by Amphora sp., are abundant in the anoxic, sulfidic and essentially dark parts of the stromatolites. Although their origin in the stromatolites is unclear, they are possibly an important source of anaerobically degraded organic matter that induces in situ aragonite precipitation. To the best of our knowledge, this is so far the highest altitude with documented actively forming stromatolites. Their generally rich, diverse and to a large extent novel microbial community likely harbours valuable genetic and proteomic reserves, and thus deserves active protection. Furthermore, since the stromatolites flourish in an environment characterized by a multitude of extremes, including high exposure to UV radiation, they can be an excellent model system for studying microbial adaptations under conditions that, at least in part, resemble those during the early phase of life evolution on Earth. PMID:23308236
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Peck, Jerilynn E; Frelich, Lee E
2008-01-01
We evaluated the impact of commercial moss harvest on the development of an understory epiphyte community in the Pacific Northwest by characterizing natural development stages using data from both a long-term regrowth study and demographic sampling. First, experimentally stripped 1 m long cylindrats on 46 shrub stems in the Oregon Coast Range were monitored for species composition and abundance annually during the first five years of recovery and again in year 10. Second, a pathway of community development was inferred by examining the relative species composition and abundance of epiphytic species present in moss mats in a four-stage chronosequence. We (1) characterized the change in richness and composition from year 1 through 10 of regrowth following experimental disturbance, (2) quantified the proportion of approximately 1-, 10-, 25-, and 50-year-old moss mats of commercially harvestable species that were monodominant, diverse, and late successional, and (3) contrasted these proportions with estimates from a compositional transition matrix derived from long-term monitoring. Roughly half of the observed moss mats demonstrated neutral dynamics and were composed of a mixture of readily dispersed acrocarps and pleurocarps. The remaining half exhibited positive dynamics and were dominated by aggressively growing pleurocarpous species such as Isothecium myosuroides. Following structural developmental pathways well established for vascular plants, moss mats shift with time from high diversity and evenness in the initial colonization and extended establishment phases to increasing Isothecium dominance during a presumed competitive-exclusion phase. Old mats exist in alternate states of either Isothecium dominance or mixed composition, either of which may have late-successional species. Patchy historic commercial moss harvest likely facilitated high diversity by increasing the simultaneous occurrence of all moss mat age classes, while modern strip harvesting methods are predicted to promote predominantly even-aged mats that are unlikely to reach "old-growth" conditions before re-harvest.
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Quantitative risk stratification in Markov chains with limiting conditional distributions.
Chan, David C; Pollett, Philip K; Weinstein, Milton C
2009-01-01
Many clinical decisions require patient risk stratification. The authors introduce the concept of limiting conditional distributions, which describe the equilibrium proportion of surviving patients occupying each disease state in a Markov chain with death. Such distributions can quantitatively describe risk stratification. The authors first establish conditions for the existence of a positive limiting conditional distribution in a general Markov chain and describe a framework for risk stratification using the limiting conditional distribution. They then apply their framework to a clinical example of a treatment indicated for high-risk patients, first to infer the risk of patients selected for treatment in clinical trials and then to predict the outcomes of expanding treatment to other populations of risk. For the general chain, a positive limiting conditional distribution exists only if patients in the earliest state have the lowest combined risk of progression or death. The authors show that in their general framework, outcomes and population risk are interchangeable. For the clinical example, they estimate that previous clinical trials have selected the upper quintile of patient risk for this treatment, but they also show that expanded treatment would weakly dominate this degree of targeted treatment, and universal treatment may be cost-effective. Limiting conditional distributions exist in most Markov models of progressive diseases and are well suited to represent risk stratification quantitatively. This framework can characterize patient risk in clinical trials and predict outcomes for other populations of risk.
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NASA Astrophysics Data System (ADS)
Mullin, S. W.; Wrighton, K. C.; Luef, B.; Wilkins, M. J.; Handley, K. M.; Williams, K. H.; Banfield, J. F.
2012-12-01
Community genomics and proteomics (proteogenomics) can be used to predict the metabolic potential of complex microbial communities and provide insight into microbial activity and nutrient cycling in situ. Inferences regarding the physiology of specific organisms then can guide isolation efforts, which, if successful, can yield strains that can be metabolically and structurally characterized to further test metagenomic predictions. Here we used proteogenomic data from an acetate-stimulated, sulfidic sediment column deployed in a groundwater well in Rifle, CO to direct laboratory amendment experiments to isolate a bacterial strain potentially involved in sulfur oxidation for physiological and microscopic characterization (Handley et al, submitted 2012). Field strains of Sulfurovum (genome r9c2) were predicted to be capable of CO2 fixation via the reverse TCA cycle and sulfur oxidation (Sox and SQR) coupled to either nitrate reduction (Nap, Nir, Nos) in anaerobic environments or oxygen reduction in microaerobic (cbb3 and bd oxidases) environments; however, key genes for sulfur oxidation (soxXAB) were not identified. Sulfidic groundwater and sediment from the Rifle site were used to inoculate cultures that contained various sulfur species, with and without nitrate and oxygen. We isolated a bacterium, Sulfurovum sp. OBA, whose 16S rRNA gene shares 99.8 % identity to the gene of the dominant genomically characterized strain (genome r9c2) in the Rifle sediment column. The 16S rRNA gene of the isolate most closely matches (95 % sequence identity) the gene of Sulfurovum sp. NBC37-1, a genome-sequenced deep-sea sulfur oxidizer. Strain OBA grew via polysulfide, colloidal sulfur, and tetrathionate oxidation coupled to nitrate reduction under autotrophic and mixotrophic conditions. Strain OBA also grew heterotrophically, oxidizing glucose, fructose, mannose, and maltose with nitrate as an electron acceptor. Over the range of oxygen concentrations tested, strain OBA was not capable of aerobic growth, but it could tolerate low oxygen conditions in the polysulfide/nitrate growth medium, suggesting that oxidases identified by genomics may play a role in detoxification rather than energy generation. Cryo-TEM imaging showed that strain OBA cells are rod-shaped and ~0.4 wide and 1.0 μm in length, and confirmed metagenomics-based predictions of a Gram-negative cell envelope, pili and polyphosphate body production. Our results show the value of integrating metagenomics, culturing, and microscopic imaging to discern the physiology of bacteria involved in biogeochemical transformations in the subsurface.
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Kidgell, Dawson J; Goodwill, Alicia M; Frazer, Ashlyn K; Daly, Robin M
2013-07-01
Transcranial direct current stimulation (tDCS) is a non-invasive technique that modulates the excitability of neurons within the primary motor cortex (M1). Research shows that anodal-tDCS applied over the non-dominant M1 (i.e. unilateral stimulation) improves motor function of the non-dominant hand. Similarly, previous studies also show that applying cathodal tDCS over the dominant M1 improves motor function of the non-dominant hand, presumably by reducing interhemispheric inhibition. In the present study, one condition involved anodal-tDCS over the non-dominant M1 (unilateral stimulation) whilst a second condition involved applying cathodal-tDCS over the dominant M1 and anodal-tDCS over non-dominant M1 (bilateral stimulation) to determine if unilateral or bilateral stimulation differentially modulates motor function of the non-dominant hand. Using a randomized, cross-over design, 11 right-handed participants underwent three stimulation conditions: 1) unilateral stimulation, that involved anodal-tDCS applied over the non-dominant M1, 2) bilateral stimulation, whereby anodal-tDCS was applied over the non-dominant M1, and cathodal-tDCS over the dominant M1, and 3) sham stimulation. Transcranial magnetic stimulation (TMS) was performed before, immediately after, 30 and 60 minutes after stimulation to elucidate the neural mechanisms underlying any potential after-effects on motor performance. Motor function was evaluated by the Purdue pegboard test. There were significant improvements in motor function following unilateral and bilateral stimulation when compared to sham stimulation at all-time points (all P < 0.05); however there was no difference across time points between unilateral and bilateral stimulation. There was also a similar significant increase in corticomotor excitability with both unilateral and bilateral stimulation immediately post, 30 minutes and 60 minutes compared to sham stimulation (all P < 0.05). Unilateral and bilateral stimulation reduced short-interval intracortical inhibition (SICI) immediately post and at 30 minutes (all P < 0.05), but returned to baseline in both conditions at 60 minutes. There was no difference between unilateral and bilateral stimulation for SICI (P > 0.05). Furthermore, changes in corticomotor plasticity were not related to changes in motor performance. These results indicate that tDCS induced behavioural changes in the non-dominant hand as a consequence of mechanisms associated with use-dependant cortical plasticity that is independent of the electrode arrangement.
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Macroinvertebrate palaeo-communities from the Jurassic succession of Gebel Maghara (Sinai, Egypt)
NASA Astrophysics Data System (ADS)
Abdelhady, Ahmed Awad; Fürsich, Franz Theodor
2014-09-01
Macrobenthic palaeo-communities of the Middle and Upper Jurassic strata of G. Maghara, Egypt, were investigated to identify relationships with environmental parameters and to trace the temporal changes of the ecosystem associated with sea-level fluctuations. The quantitative analysis of a data matrix comprising 198 macrobenthic taxa in 138 samples collected from four sections identified nine associations and three assemblages, interpreted to be representative of their original environment. Non-Metric Multidimensional Scaling (NMDS) delineated the same degree of habitat partitioning as hierarchical clusters with very little overlap. Detrended Correspondence Analysis (DCA) identified water depth as the primary environmental gradient controlling the distribution of the fauna, while Axis 2 reflects substrate consistency. Community structure is related to the various ramp environments. Based on diversities, the associations and assemblages have been divided into two major groups, low-stress polyspecific associations and high-stress paucispecific associations. The low-stress polyspecific associations were interpreted to represent two different habitats, a high-energy, firm substrate habitat, in which epifaunal bivalves and brachiopods in addition to solitary corals dominated during advanced stages of transgression, and a low-energy, soft substrate habitat dominated by infaunal bivalves during the maximum flooding. The high-stress paucispecific associations are dominated by one or few taxa and occurred (1) in an oligotrophic setting that developed during episodes of sediment starvation in restricted inner ramp environments or during early transgression, (2) in a setting characterized by high sedimentation rates which developed during advanced regression, (3) in a distal prodelta setting with soft substrate and dysoxia during sea-level lowstand, and (4) in a high-energy shoal environment during peak regression. A combined stress involving a shortage in food supply, episodic dysoxia, in addition to a soupy substrate may have developed during maximum flooding episodes. Hydrodynamic conditions were most likely the main factor controlling the benthic communities. Hydrodynamic conditions influenced the substrate type, redistributed nutrients and were responsible for stratified water masses and hypoxia. Animal-sediment relationships in addition to replacement between bivalves and brachiopods are also discussed. Middle ramp settings were found to provide the best conditions for macrobenthos.
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NASA Astrophysics Data System (ADS)
Kumar, Amit; Gokhale, Anupam Anand; Shukla, Tanuj; Dobhal, Dwarika Prasad
2016-07-01
Sediments released from high altitude glaciers exhibit varying evacuation patterns and transport characteristics owing to the presence of thick debris cover over the glacier. Despite the recent needs for integrated hydrometeorological studies in the Himalaya, little is known about the impacts of suspended sediment on hydropower generation, reservoir sedimentation, and abrasion of turbine components. Present study involves analysis of particle size distribution of suspended sediments to understand sediment evacuation patterns and transport characteristics in variable energy conditions during the ablation season. Peak suspended sediments were evacuated during extreme rainfall events. The estimated seasonal modern sediment erosion rate varies from 0.6 to 2.3 mm y- 1 for the study period (2009-2012). The analysis shows dominance of medium silt-sized to fine sand-sized particles having sediment size of 0.0156-0.25 mm corresponding to 70-80% without any significant seasonal variation. These transported sediments show that they are poorly sorted, coarser in nature with a nearly symmetrical to coarse skewed texture and kurtosis analysis suggesting mesokurtic distribution of sediments. The particle size fraction ranges between 4.65 and 5.23 ϕ, which is dominantly medium to coarse silty in texture. Results indicate that suspended sediments are evacuated in highly variable energy conditions through subglacial transport pathways because of increase in availability of meltwater with the progressive ablation season. Bulk geochemical characterization has been carried out to differentiate the source of suspended sediments and intensity of weathering. Chemical Index of Alterations (CIA) values of sediment flux range from 54.68 to 55.18 compared to the Upper Continental Crust (UCC) ~ 50, indicating moderate intensity of weathering. Mean seasonal (2009-2012) elemental fluxes and their contribution to the suspended sediment flux reflect that Si and Al are responsible for about 85% of the total detrital elemental flux. Trace elements show high concentrations of radioactive elements like U, Th, Pb, and Rb that suggest their high anomalous presence in the catchment lithology. An overall study indicates that the hydroclimatic conditions over the debris-covered glacier play a dominant controlling factor in erosion, transportation, and evacuation of suspended sediments during the ablation season.
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Crouzon's Syndrome: A Case Report
Jyothsna, M; Ahmed, Syed Basheer; Lakshmi, K Sree
2013-01-01
ABSTRACT Crouzon's syndrome (CS) is a rare autosomal dominant condition with multiple mutations of the fibroblast growth factor receptor (FGFR2) gene, which accounts for 4.8% of all cases of craniosynostosis. It is characterized by premature closure of cranial sutures, cranial deformities, midface hypoplasia, relative mandibular prognathism, hypertelorism, proptosis, strabismus and short upper lip, crowding of teeth, pseudocleft or sometimes cleft palate and other associated abnormalities. The CS can vary in severity from mild presentation to severe forms involving multiple cranial sutures. We report a case of CS in 11-year-old boy. How to cite this article: Kumar GR, Jyothsna M, Ahmed SB, Lakshmi KS, Crouzon's Syndrome: A Case Report. Int J Clin Pediatr Dent 2013;6(1):33-37. PMID:25206185
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Maple prepared organic heterostructures for photovoltaic applications
NASA Astrophysics Data System (ADS)
Stanculescu, A.; Socol, M.; Socol, G.; Mihailescu, I. N.; Girtan, M.; Stanculescu, F.
2011-09-01
In this study, we present the deposition of ZnPc, Alq3, and PTCDA thin films using Matrix Assisted Pulsed Laser Evaporation (MAPLE) technique. We also report the realisation of multilayer structures, made by the successive application of MAPLE. The films have been characterized by spectroscopic (UV-VIS and Photoluminescence) and microscopic (SEM and AFM) methods, and the effect of different deposition conditions such as fluence, number of pulses, and target concentration on the properties has been analysed. This paper also presents some investigations on the electrical conduction in sandwich type structures ITO or Si/organic layer/Au or Cu and ITO/double organic layer/Cu, emphasising the dominant effect of the height of the energetic barriers at the inorganic/organic and organic/organic interfaces.
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Synthesis of Greedy Algorithms Using Dominance Relations
NASA Technical Reports Server (NTRS)
Nedunuri, Srinivas; Smith, Douglas R.; Cook, William R.
2010-01-01
Greedy algorithms exploit problem structure and constraints to achieve linear-time performance. Yet there is still no completely satisfactory way of constructing greedy algorithms. For example, the Greedy Algorithm of Edmonds depends upon translating a problem into an algebraic structure called a matroid, but the existence of such a translation can be as hard to determine as the existence of a greedy algorithm itself. An alternative characterization of greedy algorithms is in terms of dominance relations, a well-known algorithmic technique used to prune search spaces. We demonstrate a process by which dominance relations can be methodically derived for a number of greedy algorithms, including activity selection, and prefix-free codes. By incorporating our approach into an existing framework for algorithm synthesis, we demonstrate that it could be the basis for an effective engineering method for greedy algorithms. We also compare our approach with other characterizations of greedy algorithms.
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NASA Astrophysics Data System (ADS)
Navarro-Barranco, Carlos; Tierno-de-Figueroa, José Manuel; Guerra-García, José Manuel; Sánchez-Tocino, Luis; García-Gómez, José Carlos
2013-04-01
Marine caves are environments of great interest since the organisms that inhabit them are forced to develop specific adaptations to high constraint conditions. Because of some of these particular conditions, such as light absence or oligotrophy, it can be expected that feeding strategies into caves differ from that present outside them. Nevertheless, no studies have been done to compare the trophic structure of marine caves and open habitats, at least for amphipod communities, considering their importance both inside and outside of the caves. In this study, the diet of the dominant amphipod species living on shallow sediments, both inside and outside of six marine caves in western Mediterranean, was characterized. Thereby, the gut content of 17 amphipod species was studied, being this study the first attempt to establish the feeding habit of most of these species. Analysis of digestive contents of the species showed that amphipod diet is less diverse in sediments than in other environments, such as algae and seagrasses. No herbivorous species were found in the sediment and carnivorous amphipods showed a little variety of prey, feeding mainly on crustaceans. Differences in the trophic structure were also found between marine caves and open habitats sediments: while outside the caves detritivorous was the dominant group (both in number of species and number of individuals), amphipods mainly play the role of carnivorous inside the caves. No detritivorous species were found into the caves, where carnivorous represents almost 60% of amphipods species and more than 80% of amphipod individuals. This pattern obtained in amphipods differ from the general trend observed in marine cave organisms, for which a generalist diet, such as omnivory, usually is an advantage in these oligotrophic conditions. The possible causes of this pattern are discussed.
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NASA Astrophysics Data System (ADS)
Duros, P.; Silva Jacinto, R.; Dennielou, B.; Schmidt, S.; Martinez Lamas, R.; Gautier, E.; Roubi, A.; Gayet, N.
2017-02-01
Living (Rose Bengal stained) and dead benthic foraminifera were investigated at 6 deep-sea sites sampled in the Capbreton canyon area (Bay of Biscay, France). Three sites were located along the canyon axis at 301 m, 983 m and 1478 m and 3 stations were positioned on adjacent terraces at 251 m, 894 m and 1454 m. Sedimentary features indicate that frequent sedimentary disturbances of different magnitudes occur along the Capbreton canyon axis and adjacent terraces. Such environmental conditions cause the presence of very particular benthic environments. Along the 6 studied sites, different foraminiferal responses to various sedimentary patterns are observed revealing the complexity of this canyon environment. Some sites (Gitan 3 (canyon axis), Gitan 5 (canyon axis) and Gitan 6 (terrace)) are characterized by moderate to low standing stocks and low diversity and are mainly dominated by pioneer taxa such as Fursenkoina brady, Reophax dentaliniformis and Technitella melo suggesting a recent response to turbidite deposits recorded at these sites. Others sites (Gitan 1 and Gitan 2) show extremely high standing stocks and are mainly dominated by the opportunistic Bolivina subaenariensis and Bulimina marginata. Such faunal characteristics belonging to a more advanced stage of ecosystem colonization indicates strongly food-enriched sediment but extremely unstable conditions. Moderate standing stocks and diverse assemblage composed of species such as Uvigerina mediterranea and U. peregrina has only been observed at the terrace site Gitan 4. More stable sedimentary conditions recorded at this terrace seem to be suitable to the development of a dense and diverse foraminiferal community. Numerous neritic allochtonous species were observed in the dead foraminiferal fauna. These allochthonous species mainly originate from shelf areas (<60 m).
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NASA Astrophysics Data System (ADS)
Immoor, J.; Marquardt, H.; Miyagi, L. M.; Lin, F.; Speziale, S.; Merkel, S.; Liermann, H. P.
2017-12-01
Seismic anisotropy in Earth's lowermost mantle, resulting from crystallographic preferred orientation (CPO) of elastically anisotropic minerals, is the most promising observable to map mantle flow patterns. The shear wave anisotropy observed in the lowermost mantle might be caused by CPO of (Mg,Fe)O ferropericlase that is characterized by large elastic anisotropy in the deep lower mantle. However, our understanding of the slip system activities of ferropericlase at conditions of the lowermost mantle is still incomplete. Here, we present results of an experimental study designed to determine slip system activities in (Mg,Fe)O at P-T conditions of the lower mantle. In-situ deformation experiments on powders of (Mg0.8Fe0.2)O were conducted in a graphite heated diamond anvil cell (DAC) up to a temperature of 1400K. Synchrotron x-ray diffraction data were fit with the program MAUD (Materials Analysing Using Diffraction) to extract textures and lattice strains. The experimental results were modelled using the Elasto-Viscoplastic Self Consistent (EVPSC) code. Our data indicate a change in slip system activities from dominant {110} to increasing {100} slip at temperatures above 1150 K and pressures corresponding to the mid-lower mantle. Our findings indicate an effect of both pressure and temperature on the plasticity of (Mg,Fe)O and, hence, pave the way to a better understanding of with a potential change of dominant slip system between 40-60 GPa in MgO predicted from numerical models (Amodeo et al., 2012). We use the results to model the possible contribution of ferropericlase CPO to observed seismic anisotropy in the D'' layer in the lowermost mantle. Amodeo et al. (2012) Phil Mag, 92, 1523-1541
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Runoff sources and flow paths dynamics in the Andean Páramo.
NASA Astrophysics Data System (ADS)
Correa, Alicia; Windhorst, David; Tetzlaff, Doerthe; Silva, Camila; Crespo, Patricio; Celleri, Rolando; Feyen, Jan; Breuer, Lutz
2017-04-01
The dynamics of runoff sources and flow paths in headwater catchments are still poorly understood. This is even more the case for remote areas such as the Páramo (Alpine grasslands) in the Andes, where these ecosystems act as water towers for a large fraction of the society. Temporal dynamics in water source areas, flow paths and relative age were assessed in a small catchment in the Ecuadorian Andes using data from the Zhurucay Ecohydrological Observatory (7.53 km2). We applied End Member Mixing Analysis, Hydrograph Separation and Inverse Transit Time Proxies to a multi-tracer set of solutes, stable isotopes, pH and electrical conductivity sampled from stream and twelve potential sources during two years. Rainfall, spring water and water from the bottom layers of Histosols (located at the foot of the hillslopes and in the riparian zone) and Andosols (located at the hillslopes) represented the dominant sources for runoff generation. Water coming from Histosols was the main contributor to stream water year-round, in line with a hydrological system that is dominated by pre-event water. Rainfall presented a uniform contribution during the year, while in drier conditions the spring water tripled in contribution. In wetter conditions, the relative age of stream water decreases, when the contributing area of the riparian zone expands, increasing the connectivity with lateral flow from hillslopes to the channel network. Being one of the earliest in the region, this multi-method study improved the understanding of the hydrological processes of headwater catchments and allowed to demonstrate that catchments with relatively homogeneous hydro-climatic conditions are characterized by inter-annual varying source contributions.
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Voorhies, A A; Biddanda, B A; Kendall, S T; Jain, S; Marcus, D N; Nold, S C; Sheldon, N D; Dick, G J
2012-05-01
Cyanobacteria are renowned as the mediators of Earth's oxygenation. However, little is known about the cyanobacterial communities that flourished under the low-O(2) conditions that characterized most of their evolutionary history. Microbial mats in the submerged Middle Island Sinkhole of Lake Huron provide opportunities to investigate cyanobacteria under such persistent low-O(2) conditions. Here, venting groundwater rich in sulfate and low in O(2) supports a unique benthic ecosystem of purple-colored cyanobacterial mats. Beneath the mat is a layer of carbonate that is enriched in calcite and to a lesser extent dolomite. In situ benthic metabolism chambers revealed that the mats are net sinks for O(2), suggesting primary production mechanisms other than oxygenic photosynthesis. Indeed, (14)C-bicarbonate uptake studies of autotrophic production show variable contributions from oxygenic and anoxygenic photosynthesis and chemosynthesis, presumably because of supply of sulfide. These results suggest the presence of either facultatively anoxygenic cyanobacteria or a mix of oxygenic/anoxygenic types of cyanobacteria. Shotgun metagenomic sequencing revealed a remarkably low-diversity mat community dominated by just one genotype most closely related to the cyanobacterium Phormidium autumnale, for which an essentially complete genome was reconstructed. Also recovered were partial genomes from a second genotype of Phormidium and several Oscillatoria. Despite the taxonomic simplicity, diverse cyanobacterial genes putatively involved in sulfur oxidation were identified, suggesting a diversity of sulfide physiologies. The dominant Phormidium genome reflects versatile metabolism and physiology that is specialized for a communal lifestyle under fluctuating redox conditions and light availability. Overall, this study provides genomic and physiologic insights into low-O(2) cyanobacterial mat ecosystems that played crucial geobiological roles over long stretches of Earth history. © 2012 Blackwell Publishing Ltd.
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NASA Astrophysics Data System (ADS)
Tamrat, Wuhib Zewde; Rose, Jérôme; Grauby, Olivier; Doelsch, Emmanuel; Levard, Clément; Chaurand, Perrine; Basile-Doelsch, Isabelle
2018-05-01
Because of their large surface area and reactivity, nanometric-size soil mineral phases have a high potential for soil organic matter stabilization, contaminant sorption or soil aggregation. In the literature, Fe and Al phases have been the main targets of batch-synthesized nanomineral studies while nano-aluminosilicates (Al and Si phases) have been mainly studied in Andic soils. In the present work, we synthesized secondary nanophases of Fe, Al and Si. To simulate a system as close as possible to soil conditions, we conducted laboratory simulations of the processes of (1) biotite alteration in acidic conditions producing a Al Si Fe Mg K leachate solution and (2) the following neoformation of secondary nanophases by titrating the leachate solution to pH 4.2, 5 and 7. The morphology of the nanophases, their size, crystallinity and chemistry were characterized by TEM-EDX on single particles and their local atomic structure by EXAFS (Extended X-ray Absorption Fine Structure) at the Fe absorption K-edge. The main nanophases formed were amorphous particles 10-60 nm in size whose composition (dominated by Fe and Si) was strongly controlled by the pH conditions at the end of the titration. At pH 4.2 and pH 7, the structure of the nanophases was dominated by the polymerization of Fe, which was hindered by Al, Si, Mg and K. Conversely, at pH 5, the polymerization of Fe was counteracted by precipitation of high amounts of Si. The synthetized nanophases were estimated to be rather analogous to nanophases formed in natural biotite-bearing soils. Because of their small size and potential high surface reactivity, the adsorption capacities of these nanophases with respect to the OM should be revisited in the framework of soil C storage.
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NASA Astrophysics Data System (ADS)
Koval, M. V.; Gorin, S. L.; Romanenko, F. A.; Lepskaya, E. V.; Polyakova, A. A.; Galyamov, R. A.; Esin, E. V.
2017-07-01
New data on the abiotic conditions; species composition; abundance, distribution, and migrations of fauna; and feeding interactions in an estuary ecosystem were obtained during expeditions in the mouths of Penzhina and Talovka rivers (northwest Kamchatka). It is revealed that in the ice-free season, the hydrological regime of the estuary is determined by seasonal fluctuations of river runoff, as well as fortnightly and daily variation of tides. The estuary is characterized by hypertidal fluctuations (up to 10-12 m); strong reverse flows (up to 1.0-1.5 m/s), considerable tidal variations in salinity (from 0 to 6-9‰ at the river boundary and from 6-8 to 14-16‰ at the offshore boundary), and high water turbidity (up to 1 000 NTU or more). Based on the spatial structure of the community, three ecological zones with mobile boundaries are distinguished: freshwater (salinity 0-0.1‰), estuarine (0-12.3‰), and neritic (11.2-18.9‰). High turbidity prevents the development of phytoplankton in the estuarine zone (EZ), and the local benthic community is significantly depleted due to the desalination and wide spread of aleuritic silts. Neritic copepods and nektobenthic brackish- water crustaceans generate the maximum abundance and biomass here. The species that have adapted to the local extreme hydrologic conditions dominate and form the basis of the estuarine food chain. Dominant among the EZ vertebrates are such groups as anadromous fishes (smelts, pacific salmons, charrs, and sticklebacks); waterfowl (terns, kittiwakes, cormorants, fulmars, puffins, guillemots, auklets, and wadepipers); and predatory marine mammals (larga, ringed seal, bearded seal, and white whale). The total abundance and biomass of these animals are much higher in the pelagic EZ in comparison to neighboring zones.
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Nemcok, M.; Moore, J.N.; Allis, R.; McCulloch, J.
2004-01-01
Karaha-Telaga Bodas, a vapour-dominated geothermal system located in an active volcano in western Java, is penetrated by more than two dozen deep geothermal wells reaching depths of 3 km. Detailed paragenetic and fluid-inclusion studies from over 1000 natural fractures define the liquid-dominated, transitional and vapour-dominated stages in the evolution of this system. The liquid-dominated stage was initiated by ashallow magma intrusion into the base of the volcanic cone. Lava and pyroclastic flows capped a geothermal system. The uppermost andesite flows were only weakly fractured due to the insulating effect of the intervening altered pyroclastics, which absorbed the deformation. Shear and tensile fractures that developed were filled with carbonates at shallow depths, and by quartz, epidote and actinolite at depths and temperatures over 1 km and 300??C. The system underwent numerous cycles of overpressuring, documented by subhorizontal tensile fractures, anastomosing tensile fracture patterns and implosion breccias. The development of the liquidsystem was interrupted by a catastrophic drop in fluid pressures. As the fluids boiled in response to this pressure drop, chalcedony and quartz were selectively deposited in fractures that had the largest apertures and steep dips. The orientations of these fractures indicate that the escaping overpressured fluids used the shortest possible paths to the surface. Vapour-dominated conditions were initiated at this time within a vertical chimney overlying the still hot intrusion. As pressures declined, these conditions spread outward to form the marginal vapour-dominated region encountered in the drill holes. Downward migration of the chimney, accompanied by growth of the marginal vapour-dominated regime, occurred as the intrusion cooled and the brittle-ductile transition migrated to greater depths. As the liquids boiled off, condensate that formed at the top of the vapour-dominated zone percolated downward and low-salinity meteoric water entered the marginal parts of the system. Calcite, anhydrite and fluorite precipitated in fractures on heating. Progressive sealing of the fractures resulted in the downward migration of the cap rock. In response to decreased pore pressure in the expanding vapour zone, walls of the fracture system within the vapour-dominated reservoir progressively collapsed. It left only residual permeability in the remaining fracture volume, with apertures supported only by asperities or propping breccia. In places where normal stresses acting on the fracture walls exceeded the compressive strength of the wall rock, the fractures have completely collapsed. Fractures within the present-day cap rock include strike- and oblique-slip faults, normal faults and tensile fractures, all controlled by a strike-slip stress regime. The reservoir is characterized by normal faults and tensile fractures controlled by a normal-fault stress regime. The fractures show no evidence that the orientation of the stress field has changed since fracture propagation began. Fluid migration in the lava and pyroclastic flows is controlled by fractures. Matrix permeability controls fluid flow in the sedimentary sections of the reservoir. Productive fractures are typically roughly perpendicular to the minimum compressive stress, ??3, and are prone to slip and dilation within the modern stress regime. ?? The Geological Society of London 2004.
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The vaginal microbiota: what have we learned after a decade of molecular characterization?
van de Wijgert, Janneke H H M; Borgdorff, Hanneke; Verhelst, Rita; Crucitti, Tania; Francis, Suzanna; Verstraelen, Hans; Jespers, Vicky
2014-01-01
We conducted a systematic review of the Medline database (U.S. National Library of Medicine, National Institutes of Health, Bethesda, MD, U.S.A) to determine if consistent molecular vaginal microbiota (VMB) composition patterns can be discerned after a decade of molecular testing, and to evaluate demographic, behavioral and clinical determinants of VMB compositions. Studies were eligible when published between 1 January 2008 and 15 November 2013, and if at least one molecular technique (sequencing, PCR, DNA fingerprinting, or DNA hybridization) was used to characterize the VMB. Sixty three eligible studies were identified. These studies have now conclusively shown that lactobacilli-dominated VMB are associated with a healthy vaginal micro-environment and that bacterial vaginosis (BV) is best described as a polybacterial dysbiosis. The extent of dysbiosis correlates well with Nugent score and vaginal pH but not with the other Amsel criteria. Lactobacillus crispatus is more beneficial than L. iners. Longitudinal studies have shown that a L. crispatus-dominated VMB is more likely to shift to a L. iners-dominated or mixed lactobacilli VMB than to full dysbiosis. Data on VMB determinants are scarce and inconsistent, but dysbiosis is consistently associated with HIV, human papillomavirus (HPV), and Trichomonas vaginalis infection. In contrast, vaginal colonization with Candida spp. is more common in women with a lactobacilli-dominated VMB than in women with dysbiosis. Cervicovaginal mucosal immune responses to molecular VMB compositions have not yet been properly characterized. Molecular techniques have now become more affordable, and we make a case for incorporating them into larger epidemiological studies to address knowledge gaps in etiology and pathogenesis of dysbiosis, associations of different dysbiotic states with clinical outcomes, and to evaluate interventions aimed at restoring and maintaining a lactobacilli-dominated VMB.
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The Vaginal Microbiota: What Have We Learned after a Decade of Molecular Characterization?
van de Wijgert, Janneke H. H. M.; Borgdorff, Hanneke; Verhelst, Rita; Crucitti, Tania; Francis, Suzanna; Verstraelen, Hans; Jespers, Vicky
2014-01-01
We conducted a systematic review of the Medline database (U.S. National Library of Medicine, National Institutes of Health, Bethesda, MD, U.S.A) to determine if consistent molecular vaginal microbiota (VMB) composition patterns can be discerned after a decade of molecular testing, and to evaluate demographic, behavioral and clinical determinants of VMB compositions. Studies were eligible when published between 1 January 2008 and 15 November 2013, and if at least one molecular technique (sequencing, PCR, DNA fingerprinting, or DNA hybridization) was used to characterize the VMB. Sixty three eligible studies were identified. These studies have now conclusively shown that lactobacilli-dominated VMB are associated with a healthy vaginal micro-environment and that bacterial vaginosis (BV) is best described as a polybacterial dysbiosis. The extent of dysbiosis correlates well with Nugent score and vaginal pH but not with the other Amsel criteria. Lactobacillus crispatus is more beneficial than L. iners. Longitudinal studies have shown that a L. crispatus-dominated VMB is more likely to shift to a L. iners-dominated or mixed lactobacilli VMB than to full dysbiosis. Data on VMB determinants are scarce and inconsistent, but dysbiosis is consistently associated with HIV, human papillomavirus (HPV), and Trichomonas vaginalis infection. In contrast, vaginal colonization with Candida spp. is more common in women with a lactobacilli-dominated VMB than in women with dysbiosis. Cervicovaginal mucosal immune responses to molecular VMB compositions have not yet been properly characterized. Molecular techniques have now become more affordable, and we make a case for incorporating them into larger epidemiological studies to address knowledge gaps in etiology and pathogenesis of dysbiosis, associations of different dysbiotic states with clinical outcomes, and to evaluate interventions aimed at restoring and maintaining a lactobacilli-dominated VMB. PMID:25148517
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NASA Astrophysics Data System (ADS)
Rand, K.; Logerwell, E.; Bluhm, B.; Chenelot, H.; Danielson, S. L.; Iken, K.; Sousa, L.
2016-02-01
In the Arctic, benthic invertebrate communities are characterized by high species diversity and overall biomass when compared to corresponding benthic fish communities. Communities can be characterized with respect to their species diversity, biomass and the type of functions performed by the dominant organisms. Invertebrate communities with equally high species diversity may or may not have functionally similar traits. In this study, we examined basic functional traits of the dominant trawl-collected epifaunal invertebrates (e.g. mobility, feeding mode) along with environmental variables (e.g. sediment, salinity) in two high Arctic systems in and around Barrow Canyon; the northwest Chukchi Sea shelf (SHELFZ study, 2012) and the western Beaufort Sea shelf and upper slope (2008). The epifaunal communities are characterized by a large biomass of invertebrates (average of 5,000 kg/km2 in each) and species diversity ranged from 6-75 taxa per station in the Beaufort Sea (158 total) and 26-57 taxa per station in the Chukchi (215 total). These two communities share a commonality in taxonomic families, however, only 45 species occur in both. The top 2 dominant species within each community also differ; the filter-feeding basket star, Gorgonocephalus arcticus, and sea cucumber, Psolus peronii, dominate the offshore SHELFZ survey ( 60% of the biomass) while in the Beaufort Sea survey the primarily deposit feeding brittle star, Ophiura sarsi, and the mobile, predatory crab, Chionoecetes opilio, were the most biomass-prevalent species offshore (52% of the biomass). Oceanographic processes influencing water mass distribution in and around Barrow Canyon contribute to the benthic invertebrate community structure and the spatial variation in dominant functional traits. Finally, results from this study are discussed in the context of Arctic oil and gas development and climate change.
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NASA Astrophysics Data System (ADS)
Goh, Sien Fong
An experimental and numerical study of a turbulent smoke point diffusion flame in a quiescent and cross-flow condition was performed. The fuel mass flow rate of a turbulent smoke point flame was determined at a quiescent condition and in cross-flow with velocity ranging from 2 to 4 m/s. This fuel mass flow rate is defined as the Critical Fuel Mass Flow Rate (CFMFR). At a fuel mass flow rate below the CFMFR the flame produces smoke. In the dilution study, an amount of inert gas (nitrogen) was added to the fuel stream to achieve the smoke point condition for ten different fractions of CFMFR. From this dilution study, three regions were defined, the chemically-dominated region, transition region, and momentum-dominated region. The first objective of this study was to determine the factors behind the distinction of these three regions. The second objective was to understand the effect of cross-flow velocity on the smoke point flame structure. The flame temperature, radiation, geometrical dimension of flame, velocity, and global emissions and in-flame species concentration were measured. The third objective was to study a numerical model that can simulate the turbulent smoke point flame structure. The dilution study showed that the flames in quiescent condition and in the 3.5 and 4 m/s cross-flow condition had the chemically-dominated region at 5% to 20% CFMFR, the transition region at 20% to 40% CFMFR, and the momentum-dominated region at 40% to 100% CFMFR. On the other hand, the flame in cross-flow of 2 to 3 m/s showed the chemically-dominated region at 5% to 10% CFMFR, the transition region at 10% to 30% CFMFR, and the momentum-dominated region at 30% to 100% CFMFR. The chemically-dominated flame had a sharp dual-peak structure for the flame temperature, CO2 and NO concentration profiles at 25% and 50% flame length. However, the momentum-dominated region flame exhibited a dual peak structure only at 25% flame length. The decrease of flow rate from 30% to 10% CFMFR showed an increase of flame length. The LII study showed that the soot concentration increased with the decrease of the turbulence intensity in the momentum dominated region (tested on the 100% and 60% CFMFR). The cross-flow velocity had a non-monotonic effects on the flame. The evidences could be observed from the flame length and the soot concentration results. The flame length showed a decrease when the cross-flow velocity increased from 2 to 3 m/s. The numerical model was fairly adequate in qualitatively predicting a smoke point turbulent diffusion flame structure in a cross-flow and quiescent condition. The model failed in the prediction of a laminar flame. The model showed a good agreement between experimental and numerical results for O 2 concentration and flame temperature. (Abstract shortened by UMI.)
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Wildfire and drought dynamics destabilize carbon stores of fire-suppressed forests.
Earles, J Mason; North, Malcolm P; Hurteau, Matthew D
2014-06-01
Widespread fire suppression and thinning have altered the structure and composition of many forests in the western United States, making them more susceptible to the synergy of large-scale drought and fire events. We examine how these changes affect carbon storage and stability compared to historic fire-adapted conditions. We modeled carbon dynamics under possible drought and fire conditions over a 300-year simulation period in two mixed-conifer conditions common in the western United States: (1) pine-dominated with an active fire regime and (2) fir-dominated, fire suppressed forests. Fir-dominated stands, with higher live- and dead-wood density, had much lower carbon stability as drought and fire frequency increased compared to pine-dominated forest. Carbon instability resulted from species (i.e., fir's greater susceptibility to drought and fire) and stand (i.e., high density of smaller trees) conditions that develop in the absence of active management. Our modeling suggests restoring historic species composition and active fire regimes can significantly increase carbon stability in fire-suppressed, mixed-conifer forests. Long-term management of forest carbon should consider the relative resilience of stand structure and composition to possible increases in disturbance frequency and intensity under changing climate.
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Giacomini, Henrique C.; DeAngelis, Donald; Trexler, Joel C.; Petrere, Miguel
2013-01-01
Community ecology seeks to understand and predict the characteristics of communities that can develop under different environmental conditions, but most theory has been built on analytical models that are limited in the diversity of species traits that can be considered simultaneously. We address that limitation with an individual-based model to simulate assembly of fish communities characterized by life history and trophic interactions with multiple physiological tradeoffs as constraints on species performance. Simulation experiments were carried out to evaluate the distribution of 6 life history and 4 feeding traits along gradients of resource productivity and prey accessibility. These experiments revealed that traits differ greatly in importance for species sorting along the gradients. Body growth rate emerged as a key factor distinguishing community types and defining patterns of community stability and coexistence, followed by egg size and maximum body size. Dominance by fast-growing, relatively large, and fecund species occurred more frequently in cases where functional responses were saturated (i.e. high productivity and/or prey accessibility). Such dominance was associated with large biomass fluctuations and priority effects, which prevented richness from increasing with productivity and may have limited selection on secondary traits, such as spawning strategies and relative size at maturation. Our results illustrate that the distribution of species traits and the consequences for community dynamics are intimately linked and strictly dependent on how the benefits and costs of these traits are balanced across different conditions.
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Fuentes, Sebastián; Barra, Bárbara; Caporaso, J Gregory; Seeger, Michael
2016-02-01
Hydrocarbons are worldwide-distributed pollutants that disturb various ecosystems. The aim of this study was to characterize the short-lapse dynamics of soil microbial communities in response to hydrocarbon pollution and different bioremediation treatments. Replicate diesel-spiked soil microcosms were inoculated with either a defined bacterial consortium or a hydrocarbonoclastic bacterial enrichment and incubated for 12 weeks. The microbial community dynamics was followed weekly in microcosms using Illumina 16S rRNA gene sequencing. Both the bacterial consortium and enrichment enhanced hydrocarbon degradation in diesel-polluted soils. A pronounced and rapid bloom of a native gammaproteobacterium was observed in all diesel-polluted soils. A unique operational taxonomic unit (OTU) related to the Alkanindiges genus represented ∼ 0.1% of the sequences in the original community but surprisingly reached >60% after 6 weeks. Despite this Alkanindiges-related bloom, inoculated strains were maintained in the community and may explain the differences in hydrocarbon degradation. This study shows the detailed dynamics of a soil bacterial bloom in response to hydrocarbon pollution, resembling microbial blooms observed in marine environments. Rare community members presumably act as a reservoir of ecological functions in high-diversity environments, such as soils. This rare-to-dominant bacterial shift illustrates the potential role of a rare biosphere facing drastic environmental disturbances. Additionally, it supports the concept of "conditionally rare taxa," in which rareness is a temporary state conditioned by environmental constraints. Copyright © 2016, American Society for Microbiology. All Rights Reserved.
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Stalder, Claudio; Vertino, Agostina; Rosso, Antonietta; Rüggeberg, Andres; Pirkenseer, Claudius; Spangenberg, Jorge E.; Spezzaferri, Silvia; Camozzi, Osvaldo; Rappo, Sacha; Hajdas, Irka
2015-01-01
Cold-water coral (CWC) ecosystems occur worldwide and play a major role in the ocean's carbonate budget and atmospheric CO2 balance since the Danian (~65 m.y. ago). However their temporal and spatial evolution against climatic and oceanographic variability is still unclear. For the first time, we combine the main macrofaunal components of a sediment core from a CWC mound of the Melilla Mounds Field in the Eastern Alboran Sea with the associated microfauna and we highlight the importance of foraminifera and ostracods as indicators of CWC mound evolution in the paleorecord. Abundances of macrofauna along the core reveal alternating periods dominated by distinct CWC taxa (mostly Lophelia pertusa, Madrepora oculata) that correspond to major shifts in foraminiferal and ostracod assemblages. The period dominated by M. oculata coincides with a period characterized by increased export of refractory organic matter to the seafloor and rather unstable oceanographic conditions at the benthic boundary layer with periodically decreased water energy and oxygenation, variable bottom water temperature/density and increased sediment flow. The microfaunal and geochemical data strongly suggest that M. oculata and in particular Dendrophylliidae show a higher tolerance to environmental changes than L. pertusa. Finally, we show evidence for sustained CWC growth during the Alleröd-Younger-Dryas in the Eastern Alboran Sea and that this period corresponds to stable benthic conditions with cold/dense and well oxygenated bottom waters, high fluxes of labile organic matter and relatively strong bottom currents PMID:26447699
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Designing Forest Adaptation Experiments through Manager-Scientist Partnerships
NASA Astrophysics Data System (ADS)
Nagel, L. M.; Swanston, C.; Janowiak, M.
2014-12-01
Three common forest adaptation options discussed in the context of an uncertain future climate are: creating resistance, promoting resilience, and enabling forests to respond to change. Though there is consensus on the broad management goals addressed by each of these options, translating these concepts into management plans specific for individual forest types that vary in structure, composition, and function remains a challenge. We will describe a decision-making framework that we employed within a manager-scientist partnership to develop a suite of adaptation treatments for two contrasting forest types as part of a long-term forest management experiment. The first, in northern Minnesota, is a red pine-dominated forest with components of white pine, aspen, paper birch, and northern red oak, with a hazel understory. The second, in southwest Colorado, is a warm-dry mixed conifer forest dominated by ponderosa pine, white fir, and Douglas-fir, with scattered aspen and an understory of Gambel oak. The current conditions at both sites are characterized by overstocking with moderate-to-high fuel loading, vulnerability to numerous forest health threats, and are generally uncharacteristic of historic structure and composition. The desired future condition articulated by managers for each site included elements of historic structure and natural range of variability, but were greatly tempered by known vulnerabilities and projected changes to climate and disturbance patterns. The resultant range of treatments we developed are distinct for each forest type, and address a wide range of management objectives.
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From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation
Fuentes, Sebastián; Barra, Bárbara; Caporaso, J. Gregory
2015-01-01
Hydrocarbons are worldwide-distributed pollutants that disturb various ecosystems. The aim of this study was to characterize the short-lapse dynamics of soil microbial communities in response to hydrocarbon pollution and different bioremediation treatments. Replicate diesel-spiked soil microcosms were inoculated with either a defined bacterial consortium or a hydrocarbonoclastic bacterial enrichment and incubated for 12 weeks. The microbial community dynamics was followed weekly in microcosms using Illumina 16S rRNA gene sequencing. Both the bacterial consortium and enrichment enhanced hydrocarbon degradation in diesel-polluted soils. A pronounced and rapid bloom of a native gammaproteobacterium was observed in all diesel-polluted soils. A unique operational taxonomic unit (OTU) related to the Alkanindiges genus represented ∼0.1% of the sequences in the original community but surprisingly reached >60% after 6 weeks. Despite this Alkanindiges-related bloom, inoculated strains were maintained in the community and may explain the differences in hydrocarbon degradation. This study shows the detailed dynamics of a soil bacterial bloom in response to hydrocarbon pollution, resembling microbial blooms observed in marine environments. Rare community members presumably act as a reservoir of ecological functions in high-diversity environments, such as soils. This rare-to-dominant bacterial shift illustrates the potential role of a rare biosphere facing drastic environmental disturbances. Additionally, it supports the concept of “conditionally rare taxa,” in which rareness is a temporary state conditioned by environmental constraints. PMID:26590285
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Gagliano, A L; Tagliavia, M; D'Alessandro, W; Franzetti, A; Parello, F; Quatrini, P
2016-03-01
This study is focused on the (micro)biogeochemical features of two close geothermal sites (FAV1 and FAV2), both selected at the main exhalative area of Pantelleria Island, Italy. A previous biogeochemical survey revealed high CH4 consumption and the presence of a diverse community of methanotrophs at FAV2 site, whereas the close site FAV1 was apparently devoid of methanotrophs and recorded no CH4 consumption. Next-Generation Sequencing (NGS) techniques were applied to describe the bacterial and archaeal communities which have been linked to the physicochemical conditions and the geothermal sources of energy available at the two sites. Both sites are dominated by Bacteria and host a negligible component of ammonia-oxidizing Archaea (phylum Thaumarchaeota). The FAV2 bacterial community is characterized by an extraordinary diversity of methanotrophs, with 40% of the sequences assigned to Methylocaldum, Methylobacter (Gammaproteobacteria) and Bejerickia (Alphaproteobacteria); conversely, a community of thermo-acidophilic chemolithotrophs (Acidithiobacillus, Nitrosococcus) or putative chemolithotrophs (Ktedonobacter) dominates the FAV1 community, in the absence of methanotrophs. Since physical andchemical factors of FAV1, such as temperature and pH, cannot be considered limiting for methanotrophy, it is hypothesized that the main limiting factor for methanotrophs could be high NH4(+) concentration. At the same time, abundant availability of NH4(+) and other high energy electron donors and acceptors determined by the hydrothermal flux in this site create more energetically favourable conditions for chemolithotrophs that outcompete methanotrophs in non-nitrogen-limited soils. © 2015 John Wiley & Sons Ltd.
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NASA Astrophysics Data System (ADS)
Baba, Soumei; Sawada, Kenichiro; Kubota, Chisato; Kawanami, Osamu; Asano, Hitoshi; Inoue, Koichi; Ohta, Haruhiko
Recent increase in the size of space platforms requires the management of larger amount of waste heat under high heat flux conditions and the transportation of it along a long distance to the radiator. Flow boiling applied to the thermal management system in space attracts much attention as promising means to realize high-performance heat transfer and transport because of large latent heat of vaporization. In microgravity two-phase flow phenomena are quite different from those under 1-g condition because buoyancy effects are significantly reduced and surface tension becomes dominant. By the similar reason, flow boiling characteristics in mini channels are not the same as those in channels of normal sizes. In the present stage, however, the boundary between the regimes of body force dominated and of surface tension dominated is not clear. The design of space thermal devices, operated under the conditions where no effect of gravity is expected, will improve the reliability of their ground tests, provided that the boundaries of dominant force regimes are clarified quantitatively in advance. In flow boiling in mini channels or in parallel channels, back flow could be occurred because of rapid growth of bubbles in a confined space, resulting flow rate fluctuation. Flow boiling heat transfer characteristics in mini channels can be changed considerably by the existence of inlet flow rate fluctuation. It is important to pay attention to experimental accuracy and to use a single circular mini-tube to compare heat transfer characteristics with those of normal size tubes. In the present paper, effects of tube orientations, i.e. vertical upward flow, vertical downward flow and horizontal flow, on flow boiling heat transfer characteristics is investigated for FC72 flowing in single mini-tubes with inner diameters of 0.13 and 0.51 mm to establish a reliable dominant force regime map. If the regime map is described by using dimensionless groups of Bond, Weber and Froude numbers, the boundary of dominant forces of inertia and body force is examined by using the mini-tube of the larger diameter at constant Bond number Bo = 0.51, and the boundary of inertia and surface tension by using the mini-tube of smaller diameter at Bo = 0.033. The influence of inertia is varied by the change of vapor quality, i.e. ratio of vapor mass flow rate to the total, under constant mass velocities, where the velocity of liquid-vapor mixtures is increased with increasing vapor quality. For the tube diameter of 0.51 mm, under low inertia conditions at Froude number Fr < 5, heat transfer coefficients were influenced by the tube orientation, while the heat transfer coefficients were almost independent of the orientation for Fr > 5. The results indicated that the boundary between the body force dominated and the inertia force dominated regimes was given by Froude number as Fr ˜ 5. On the other hand, for tube diameter of 0.13 mm, almost no effect of tube = orientation was observed for all combinations of mass velocity and vapor quality, and heat transfer coefficients were independent of vapor quality under low inertia conditions at Weber number We < 5, and vice versa. The results implied the boundary between the surface tension dominated and the inertia force dominated regimes was represented by We ˜ 5. = In addition, by the reflection of both results on the two-dimensional regime map, the boundary between the surface tension dominated and the body force dominated regimes was approx-imately evaluated as Bo ˜ 0.25 from the crossing point of two boundary lines. This value = located in the range of 0.033 < Bo < 0.51 is consistent with the boundaries between the sur-face tension dominated and the body force dominated regimes classified for the smaller and larger mini-tubes, respectively, under low inertia conditions.
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NASA Astrophysics Data System (ADS)
Turner, K.; Wolfe, B. B.; Edwards, T. W.
2010-12-01
The Old Crow Flats (OCF), Yukon Territory, is a wetland of international significance that comprises approximately 2700 shallow thermokarst lakes. Located near the northern limit of the boreal forest, the OCF provides vital habitat for abundant wildlife including waterfowl, moose, muskrat, and the Porcupine Caribou Herd, which support the traditional lifestyle of the Vuntut Gwitchin First Nation. Thermokarst lakes, which occupy vast northern regions, are greatly influenced by climate conditions. In the OCF and other regions there have been observations of decreasing water levels and an increase in frequency of lake drainage events over recent decades. Though there is widespread concern that thermokarst landscape changes are accelerating as a result of ongoing climate change, there are few studies that have investigated current and past variability of lake water balances and climate interactions at the landscape scale. As part of a Government of Canada International Polar Year multidisciplinary project, the present and past hydrology of lakes spanning the OCF are being investigated using water isotope tracers and paleolimnological approaches. Water samples were obtained from 57 lakes three times over three ice-free seasons (2007-09) and analyzed for oxygen and hydrogen isotope composition in order to capture seasonal and interannual changes in water balance conditions. Results highlight strong diversity in the hydrology of lakes throughout the OCF. Based on patterns of isotopic evolution and calculations of input source compositions and evaporation-to-inflow ratios, we identified snowmelt-dominated, rainfall-dominated, groundwater-influenced, evaporation-dominated and drained lake types, which represent the dominant hydrological processes influencing lake water balances. Lake physical and catchment land cover characteristics influence dominant input type (rain or snow). Snowmelt-dominated catchments are large relative to lake surface areas and typically contain woodland or large willow land cover that allows for greater snowpack development in contrast to rainfall-dominated lakes, which have catchments dominated by tundra vegetation that are typically smaller relative to lake areas. Precipitation during the three-year study was highly variable and strongly influenced water balance conditions. For example, in years of reduced precipitation, many rainfall-dominated lakes are susceptible to becoming evaporation-dominated late in the ice-free season, whereas prolonged wet conditions can lead to increased thermokarst activity and subsequent lake drainage events. Approaches used in this modern water balance study are readily transferable to other northern thermokarst landscapes in order to develop greater insight into landscape-scale responses to ongoing climate change. Additionally, knowledge of modern water balance variability throughout the OCF provides the basis for interpretation of past limnological conditions, which are being determined through ongoing paleolimnological analyses. Key findings will be used to enhance our ability to anticipate how the water balance of lakes in the OCF will respond to future climate change.
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Dysaerobic trace fossils and ichnofabrics in the upper Jurassic Kimmeridge Clay of southern England
DOE Office of Scientific and Technical Information (OSTI.GOV)
Wignall, P.B.
The trace fossil suite from the Kimmeridge Clay is calibrated against an oxygen gradient derived from previous geochemical, lithological and shelly macrofaunal studies. Several soft-bodied trace markers appear to have tolerated lower oxygen tensions than even the hardiest shelly benthic macrofauna-a common occurrence in both recent and ancient dysaerobic settings. Lowest diversity trace fossil assemblages consist of Astacimorphichnus etchesi (new ichnotaxon), a small endostratal pascichnial trace attributed to pioneering polychaete populations. Ekdale and Masons' (1988) contention that fodinichnia dominate the lowest diversity and lowest oxygen settings is not substantiated as the only example of this feeding strategy, Rhizocorallium irregulare, ismore » encountered in moderately diverse trace fossil assemblages associated with a low diversity shelly macrofauna. Upper dysaerobic conditions are characterized by the development of a surface mixed layer and the consequent destruction of fine lamination. Tiering is only developed under normal oxygen conditions with Chondrites as the deepest trace. In contrast to many previous studies, Chondrites is never found in dysaerobic facies.« less
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How Phytoplankton Membranes Cope With Steep Ionic Strength (Salinity) Gradient?
NASA Astrophysics Data System (ADS)
Gasparovic, B.; Sesar, T.; Cankovic, M.; Ljubešić, Z.; Hrustić, E.; Zhu, Z.; Zhang, R.; Du, J.
2016-02-01
We report on phytoplankton accommodation on stressful conditions being steep ionic strength, i.e. salinity, changes, the conditions regularly found in the estuaries. We aimed defining how lipid composition of phytoplankton membrane structure is accommodated to prevent spontaneous osmosis. Salinity-dependent lipid profiles for particulate lipid extracts from blooming periods of the two opposing estuaries: eutrophic and polluted Wenchang River Estuary and pristine oligotrophic/mesotrophic Krka River Estuary were characterized by thin layer chromatography (TLC). The composition of phytoplankton pigments which was analyzed by high performance liquid chromatography. Domination of pigment Fucoxanthin in both estuaries indicates diatoms were major blooming group. While total particulate lipid concentration was almost an order of magnitude higher in the Wenchang River estuary (on average 238 µg/L) than in the Krka River Estuary (on average 36 µg/L), the lipid composition was similar. This implies that salinity stress is the main influential factor on phytoplankton lipid composition rather than availability of nutrients. Details on the lipid composition that follow salinity changes will be discussed.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Harrington, Timothy D.; Babauta, Jerome T.; Davenport, Emily K.
We investigated ion transport limitations on 3D graphite felt electrodes by growing Geobacter sulfurreducens biofilms with advection to eliminate external mass transfer limitations. We characterized ion transport limitations by: (i) showing that serially increasing NaCl concentration up to 200mM increased current linearly up to a total of þ273% vs. 0mM NaCl under advective conditions; (ii) growing the biofilm with a starting concentration of 200mM NaCl, which led to a maximum current increase of 400% vs. current generation without NaCl, and (iii) showing that un-colonized surface area remained even after steadystate current was reached. After accounting for iR effects, we confirmedmore » that the excess surface area existed despite a non-zero overpotential. The fact that the biofilm was constrained from colonizing and producing further current under these conditions confirmed the biofilms under study here were ion transport-limited. Our work demonstrates that the use of high surface area electrodes may not increase current density when the system design allows ion transport limitations to become dominant.« less
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da Silva-Filho, Eurípedes Alves; Brito dos Santos, Scheila Karina; Resende, Alecsandra do Monte; de Morais, José Otamar Falcão; de Morais, Marcos Antonio; Ardaillon Simões, Diogo
2005-07-01
Yeast population used in industrial production of fuel-ethanol may vary according to the plant process condition and to the environmental stresses imposed to yeast cells. Therefore, yeast strains isolated from a particular industrial process may be adapted to such conditions and should be used as starter strain instead of less adapted commercial strains. This work reports the use of PCR-fingerprinting method based on microsatellite primer (GTG)5 to characterize the yeast population dynamics along the fermentation period in six distilleries. The results show that indigenous fermenting strains present in the crude substrate can be more adapted to the industrial process than commercial strains. We also identified new strains that dominate the yeast population and were more present either in molasses or sugar cane fermenting distilleries. Those strains were proposed to be used as starters in those industrial processes. This is the first report on the use of molecular markers to discriminate Saccharomyces cerevisiae strains from fuel-ethanol producing process.
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Topology in two dimensions. IV - CDM models with non-Gaussian initial conditions
NASA Astrophysics Data System (ADS)
Coles, Peter; Moscardini, Lauro; Plionis, Manolis; Lucchin, Francesco; Matarrese, Sabino; Messina, Antonio
1993-02-01
The results of N-body simulations with both Gaussian and non-Gaussian initial conditions are used here to generate projected galaxy catalogs with the same selection criteria as the Shane-Wirtanen counts of galaxies. The Euler-Poincare characteristic is used to compare the statistical nature of the projected galaxy clustering in these simulated data sets with that of the observed galaxy catalog. All the models produce a topology dominated by a meatball shift when normalized to the known small-scale clustering properties of galaxies. Models characterized by a positive skewness of the distribution of primordial density perturbations are inconsistent with the Lick data, suggesting problems in reconciling models based on cosmic textures with observations. Gaussian CDM models fit the distribution of cell counts only if they have a rather high normalization but possess too low a coherence length compared with the Lick counts. This suggests that a CDM model with extra large scale power would probably fit the available data.
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NASA Astrophysics Data System (ADS)
Figueiral, I.; Terral, J.-F.
2002-02-01
The study of archaeological charcoal preserved in the sediments of Buraca Grande (Estremadura, Portugal) are used to aid the reconstruction of vegetation available to prehistoric settlements from the Upper Palaeolithic to the Neolithic. Results indicate the possible existence of three different phases. The first is mostly characterized by the presence of Pinus type sylvestris and of Buxus sempervirens. During the second phase, these taxa are replaced by more thermophilous elements dominated by Olea europaea. The decrease of Olea europaea in the last archaeological layer appears to represent the beginning of a third phase. The eco-anatomical analyses of charcoal fragments identified as Olea europaea allowed us to evaluate the palaeoclimatic conditions during this period. Two main phases are recognized; the first (Upper Pleistocene) is drier and cooler than present, while the Holocene sequence is comparable to present-day conditions. Results from both analyses are complementary and appear to show that this region was a refuge area for thermophilous taxa during the colder periods of the Pleistocene.
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Liquid jet breakup regimes at supercritical pressures
Oefelein, Joseph C.; Dahms, Rainer Norbert Uwe
2015-07-23
Previously, a theory has been presented that explains how discrete vapor–liquid interfaces become diminished at certain high-pressure conditions in a manner that leads to well known qualitative trends observed from imaging in a variety of experiments. Rather than surface tension forces, transport processes can dominate over relevant ranges of conditions. In this paper, this framework is now generalized to treat a wide range of fuel-oxidizer combinations in a manner consistent with theories of capillary flows and extended corresponding states theory. Different flow conditions and species-specific molecular properties are shown to produce distinct variations of interfacial structures and local free molecularmore » paths. These variations are shown to occur over the operating ranges in a variety of propulsion and power systems. Despite these variations, the generalized analysis reveals that the envelope of flow conditions at which the transition from classical sprays to diffusion-dominated mixing occurs exhibits a characteristic shape for all liquid–gas combinations. As a result, for alkane-oxidizer mixtures, it explains that these conditions shift to higher pressure flow conditions with increasing carbon number and demonstrates that, instead of widely assumed classical spray atomization, diffusion-dominated mixing may occur under relevant high-pressure conditions in many modern devices.« less
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NASA Astrophysics Data System (ADS)
Lancaster, N.; LeBlanc, D.; Bebis, G.; Nicolescu, M.
2015-12-01
Dune-field patterns are believed to behave as self-organizing systems, but what causes the patterns to form is still poorly understood. The most obvious (and in many cases the most significant) aspect of a dune system is the pattern of dune crest lines. Extracting meaningful features such as crest length, orientation, spacing, bifurcations, and merging of crests from image data can reveal important information about the specific dune-field morphological properties, development, and response to changes in boundary conditions, but manual methods are labor-intensive and time-consuming. We are developing the capability to recognize and characterize patterns of sand dunes on planetary surfaces. Our goal is to develop a robust methodology and the necessary algorithms for automated or semi-automated extraction of dune morphometric information from image data. Our main approach uses image processing methods to extract gradient information from satellite images of dune fields. Typically, the gradients have a dominant magnitude and orientation. In many cases, the images have two major dominant gradient orientations, for the sunny and shaded side of the dunes. A histogram of the gradient orientations is used to determine the dominant orientation. A threshold is applied to the image based on gradient orientations which agree with the dominant orientation. The contours of the binary image can then be used to determine the dune crest-lines, based on pixel intensity values. Once the crest-lines have been extracted, the morphological properties can be computed. We have tested our approach on a variety of images of linear and crescentic (transverse) dunes and compared dune detection algorithms with manually-digitized dune crest lines, achieving true positive values of 0.57-0.99; and false positives values of 0.30-0.67, indicating that out approach is generally robust.
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Dominance rank causally affects personality and glucocorticoid regulation in female rhesus macaques
Kohn, Jordan N.; Snyder-Mackler, Noah; Barreiro, Luis B.; Johnson, Zachary P.; Tung, Jenny; Wilson, Mark E.
2017-01-01
Low social status is frequently associated with heightened exposure to social stressors and altered glucocorticoid regulation by the hypothalamic-pituitary-adrenal (HPA) axis. Additionally, personality differences can affect how individuals behave in response to social conditions, and thus may aggravate or protect against the effects of low status on HPA function. Disentangling the relative importance of personality from the effects of the social environment on the HPA axis has been challenging, since social status can predict aspects of behavior, and both can remain stable across the lifespan. To do so here, we studied an animal model of social status and social behavior, the rhesus macaque (Macaca mulatta). We performed two sequential experimental manipulations of dominance rank (i.e., social status) in 45 adult females, allowing us to characterize personality and glucocorticoid regulation (based on sensitivity to the exogenous glucocorticoid dexamethasone) in each individual while she occupied two different dominance ranks. We identified two behavioral characteristics, termed ‘social approachability’ and ‘boldness,’ which were highly social status-dependent. Social approachability and a third dimension, anxiousness, were also associated with cortisol dynamics in low status females, suggesting that behavioral tendencies may sensitize individuals to the effects of low status on HPA axis function. Finally, we found that improvements in dominance rank increased dexamethasone-induced acute cortisol suppression and glucocorticoid negative feedback. Our findings indicate that social status causally affects both behavioral tendencies and glucocorticoid regulation, and that some behavioral tendencies also independently affect cortisol levels, beyond the effects of rank. Together, they highlight the importance of considering personality and social status together when investigating their effects on HPA axis function. PMID:27639059
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Dominance rank causally affects personality and glucocorticoid regulation in female rhesus macaques.
Kohn, Jordan N; Snyder-Mackler, Noah; Barreiro, Luis B; Johnson, Zachary P; Tung, Jenny; Wilson, Mark E
2016-12-01
Low social status is frequently associated with heightened exposure to social stressors and altered glucocorticoid regulation by the hypothalamic-pituitary-adrenal (HPA) axis. Additionally, personality differences can affect how individuals behave in response to social conditions, and thus may aggravate or protect against the effects of low status on HPA function. Disentangling the relative importance of personality from the effects of the social environment on the HPA axis has been challenging, since social status can predict aspects of behavior, and both can remain stable across the lifespan. To do so here, we studied an animal model of social status and social behavior, the rhesus macaque (Macaca mulatta). We performed two sequential experimental manipulations of dominance rank (i.e., social status) in 45 adult females, allowing us to characterize personality and glucocorticoid regulation (based on sensitivity to the exogenous glucocorticoid dexamethasone) in each individual while she occupied two different dominance ranks. We identified two behavioral characteristics, termed 'social approachability' and 'boldness,' which were highly social status-dependent. Social approachability and a third dimension, anxiousness, were also associated with cortisol dynamics in low status females, suggesting that behavioral tendencies may sensitize individuals to the effects of low status on HPA axis function. Finally, we found that improvements in dominance rank increased dexamethasone-induced acute cortisol suppression and glucocorticoid negative feedback. Our findings indicate that social status causally affects both behavioral tendencies and glucocorticoid regulation, and that some behavioral tendencies also independently affect cortisol levels, beyond the effects of rank. Together, they highlight the importance of considering personality and social status together when investigating their effects on HPA axis function. Copyright © 2016 Elsevier Ltd. All rights reserved.
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Litter sex composition influences dominance status of Alpine marmots (Marmota marmota).
Dupont, Pierre; Pradel, Roger; Lardy, Sophie; Allainé, Dominique; Cohas, Aurélie
2015-11-01
In social species, the hierarchical status of an individual has important consequences for its fitness. While many studies have focused on individual condition to explain access to dominance, very few have investigated the influence of the social environment, especially during early life. Yet it is known that environmental conditions early in life may influence several traits at adulthood. Here, we examine the influence of early social environment on accession to dominance by investigating the influence of litter size and sex composition on survival and the probability of ascending to dominance later in life using a 20-year dataset from a wild population of Alpine marmots (Marmota marmota). Although litter size had no effect on the fate of individuals, litter sex composition affected male juvenile survival and both male and female probabilities of reaching dominant status when adult. Male juveniles incur lower survival when the number of male juveniles in the litter increases, and individuals of both sexes from male-biased litters are more likely to become dominant than individuals from female-biased litters. However, the absolute number of sisters in the litter, rather than the sex ratio, seems to be an important predictor of the probability of acquiring dominant status: pups having more sisters are less likely to become dominant. Several potential mechanisms to explain these results are discussed.
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NASA Astrophysics Data System (ADS)
Gatti, M.; Vielzeuf, P.; Davis, C.; Cawthon, R.; Rau, M. M.; DeRose, J.; De Vicente, J.; Alarcon, A.; Rozo, E.; Gaztanaga, E.; Hoyle, B.; Miquel, R.; Bernstein, G. M.; Bonnett, C.; Carnero Rosell, A.; Castander, F. J.; Chang, C.; da Costa, L. N.; Gruen, D.; Gschwend, J.; Hartley, W. G.; Lin, H.; MacCrann, N.; Maia, M. A. G.; Ogando, R. L. C.; Roodman, A.; Sevilla-Noarbe, I.; Troxel, M. A.; Wechsler, R. H.; Asorey, J.; Davis, T. M.; Glazebrook, K.; Hinton, S. R.; Lewis, G.; Lidman, C.; Macaulay, E.; Möller, A.; O'Neill, C. R.; Sommer, N. E.; Uddin, S. A.; Yuan, F.; Zhang, B.; Abbott, T. M. C.; Allam, S.; Annis, J.; Bechtol, K.; Brooks, D.; Burke, D. L.; Carollo, D.; Carrasco Kind, M.; Carretero, J.; Cunha, C. E.; D'Andrea, C. B.; DePoy, D. L.; Desai, S.; Eifler, T. F.; Evrard, A. E.; Flaugher, B.; Fosalba, P.; Frieman, J.; García-Bellido, J.; Gerdes, D. W.; Goldstein, D. A.; Gruendl, R. A.; Gutierrez, G.; Honscheid, K.; Hoormann, J. K.; Jain, B.; James, D. J.; Jarvis, M.; Jeltema, T.; Johnson, M. W. G.; Johnson, M. D.; Krause, E.; Kuehn, K.; Kuhlmann, S.; Kuropatkin, N.; Li, T. S.; Lima, M.; Marshall, J. L.; Melchior, P.; Menanteau, F.; Nichol, R. C.; Nord, B.; Plazas, A. A.; Reil, K.; Rykoff, E. S.; Sako, M.; Sanchez, E.; Scarpine, V.; Schubnell, M.; Sheldon, E.; Smith, M.; Smith, R. C.; Soares-Santos, M.; Sobreira, F.; Suchyta, E.; Swanson, M. E. C.; Tarle, G.; Thomas, D.; Tucker, B. E.; Tucker, D. L.; Vikram, V.; Walker, A. R.; Weller, J.; Wester, W.; Wolf, R. C.
2018-06-01
We use numerical simulations to characterize the performance of a clustering-based method to calibrate photometric redshift biases. In particular, we cross-correlate the weak lensing source galaxies from the Dark Energy Survey Year 1 sample with redMaGiC galaxies (luminous red galaxies with secure photometric redshifts) to estimate the redshift distribution of the former sample. The recovered redshift distributions are used to calibrate the photometric redshift bias of standard photo-z methods applied to the same source galaxy sample. We apply the method to two photo-z codes run in our simulated data: Bayesian Photometric Redshift and Directional Neighbourhood Fitting. We characterize the systematic uncertainties of our calibration procedure, and find that these systematic uncertainties dominate our error budget. The dominant systematics are due to our assumption of unevolving bias and clustering across each redshift bin, and to differences between the shapes of the redshift distributions derived by clustering versus photo-zs. The systematic uncertainty in the mean redshift bias of the source galaxy sample is Δz ≲ 0.02, though the precise value depends on the redshift bin under consideration. We discuss possible ways to mitigate the impact of our dominant systematics in future analyses.
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ERIC Educational Resources Information Center
Friedman, Howard S.
1979-01-01
Students' perceptions of sincerity, dominance, and positivity were measured by pairing happy, angry, surprised and sad faces of teachers with teachers' comments characterized as positive or negative and dominant or submissive. Clear effects of facial-verbal combinations emerged; there were no sex differences other than in perceptions of sincerity.…
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ERIC Educational Resources Information Center
Galloway, Margaret E.
A review of the literature reveals that American Indian women are stereotyped into two roles--Indian princess or Indian squaw. Indian women who reject their culture are considered to be princesses by the dominant culture. Those who remain with their culture are considered to be squaws by the dominant culture. This paper analyzes the portrayal of…
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Dominant side in single-leg stance stability during floor oscillations at various frequencies
2014-01-01
Background We investigated lateral dominance in the postural stability of single-leg stance with anteroposterior floor oscillations at various frequencies. Methods Thirty adults maintained a single-leg stance on a force platform for 20 seconds per trial. Trials were performed with no oscillation (static condition) and with anteroposterior floor oscillations (2.5-cm amplitude) at six frequencies: 0.25, 0.5, 0.75, 1.0, 1.25 and 1.5 Hz (dynamic condition). A set of three trials was performed on each leg in each oscillation frequency in random order. The mean speed of the center of pressure in the anteroposterior direction (CoPap) was calculated as an index of postural stability, and frequency analysis of CoPap sway was performed. Footedness for carrying out mobilizing activities was assessed with a questionnaire. Results CoPap speed exponentially increased as oscillation frequency increased in both legs. The frequency analysis of CoPap showed a peak <0.3 Hz at no oscillation. The frequency components at 0.25-Hz oscillation included common components with no oscillation and those at 1.5-Hz oscillation showed the maximum amplitude among all conditions. Postural stability showed no significant difference between left- and right-leg stance at no oscillation and oscillations ≤1.25 Hz, but at 1.5-Hz oscillation was significantly higher in the right-leg stance than in the left-leg stance. For the lateral dominance of postural stability at individual levels, the lateral difference in postural stability at no oscillation was positively correlated with that at 0.25-Hz oscillation (r = 0.51) and negatively correlated with that at 1.5-Hz oscillation (r = -0.53). For 70% of subjects, the dominant side of postural stability was different at no oscillation and 1.5-Hz oscillation. In the subjects with left- or right-side dominance at no oscillation, 94% or 38% changed their dominant side at 1.5-Hz oscillation, with a significant difference between these percentages. In the 1.5-Hz oscillation, 73% of subjects had concordance between the dominant side of postural stability and that of mobilizing footedness. Conclusion In static conditions, there was no lateral dominance of stability during single-leg stance. At 1.5-Hz oscillation, the highest frequency, right-side dominance of postural stability was recognized. Functional role in supporting leg may be divided between left and right legs according to the change of balance condition from static to dynamic. PMID:25127541
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Birch, David G; Bernstein, Paul S; Iannacone, Alessandro; Pennesi, Mark E; Lam, Byron L; Heckenlively, John; Csaky, Karl; Hartnett, Mary Elizabeth; Winthrop, Kevin L; Jayasundera, Thiran; Hughbanks-Wheaton, Dianna K; Warner, Judith; Yang, Paul; Fish, Gary Edd; Teske, Michael P; Sklaver, Neal L; Erker, Laura; Chegarnov, Elvira; Smith, Travis; Wahle, Aimee; VanVeldhuisen, Paul C; McCormack, Jennifer; Lindblad, Robert; Bramer, Steven; Rose, Stephen; Zilliox, Patricia; Francis, Peter J; Weleber, Richard G
2018-06-07
There are no approved drug treatments for autosomal dominant retinitis pigmentosa, a relentlessly progressive cause of adult and childhood blindness. To evaluate the potential efficacy and assess the safety of orally administered valproic acid (VPA) in the treatment of autosomal dominant retinitis pigmentosa. Multicenter, phase 2, prospective, interventional, placebo-controlled, double-masked randomized clinical trial. The study took place in 6 US academic retinal degeneration centers. Individuals with genetically characterized autosomal dominant retinitis pigmentosa were randomly assigned to receive treatment or placebo for 12 months. Analyses were intention-to-treat. Oral VPA 500 mg to 1000 mg daily for 12 months or placebo. The primary outcome measure was determined prior to study initiation as the change in visual field area (assessed by the III4e isopter, semiautomated kinetic perimetry) between baseline and month 12. The mean (SD) age of the 90 participants was 50.4 (11.6) years. Forty-four (48.9%) were women, 87 (96.7%) were white, and 79 (87.8%) were non-Hispanic. Seventy-nine participants (87.8%) completed the study (42 [95.5%] received placebo and 37 [80.4%] received VPA). Forty-two (46.7%) had a rhodopsin mutation. Most adverse events were mild, although 7 serious adverse events unrelated to VPA were reported. The difference between the VPA and placebo arms for mean change in the primary outcome was -150.43 degree2 (95% CI, -290.5 to -10.03; P = .035). This negative value indicates that the VPA arm had worse outcomes than the placebo group. This study brings to light the key methodological considerations that should be applied to the rigorous evaluation of treatments for these conditions. This study does not provide support for the use of VPA in the treatment of autosomal dominant retinitis pigmentosa. ClinicalTrials.gov Identifier: NCT01233609.
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Lactic acid bacterium and yeast microbiotas of sixteen French traditional sourdoughs.
Lhomme, Emilie; Lattanzi, Anna; Dousset, Xavier; Minervini, Fabio; De Angelis, Maria; Lacaze, Guylaine; Onno, Bernard; Gobbetti, Marco
2015-12-23
Sixteen sourdoughs (FS1-FS16) used for the manufacture of traditional French breads were characterized by strongly acid conditions (median value of pH 3.5). The concentration of free amino acids (FAA) was highly variable, due to different proteolytic activity of flour used for back slopping and of dominant microorganisms. Median value of cell density of lactic acid bacteria (LAB) was 9.2 log CFU/g. The ratio between LAB and yeasts ranged from 10,000:1 to 10:1. According to the culture-dependent method and 16S metagenetics, Lactobacillus sanfranciscensis was the dominant species in French sourdoughs. FS5 and FS15, propagated according to protocols including one back slopping step at 14 °C, were the only exceptions. High positive correlations were found between L. sanfranciscensis, temperature of back slopping and FAA. The results of this study highlighted the broad adaptability of L. sanfranciscensis to very acid sourdough. Besides species frequently encountered (e.g., Lactobacillus parabrevis/Lactobacillus hammesii, Lactobacillus plantarum and Leuconostoc mesenteroides), first Lactobacillus xiangfangensis (FS5) and Lactobacillus diolivorans (FS15) were found in sourdough. As determined by RAPD-PCR analyses, the sourdough samples showed a different number of strains, ranging from 5 (FS9, FS11 and FS15) to 12 (FS1 and FS13), meaning a highly variable bacterial diversity. Cluster analysis showed that different sourdoughs, especially when propagated in the same bakery, may harbor similar strains. Except for L. plantarum (FS5) and Ln. mesenteroides (FS3), all the dominant species were detected by both 16S metagenetics and culture-dependent method. Yeast diversity was lower than LAB. Except for FS4 (solely dominated by Kazachstania servazzii), yeast microbiota of French sourdoughs was dominated by Saccharomyces cerevisiae. Strains isolated in this study could be a useful base for developing new basic researches on physiology, metabolism, and intraspecific diversity of L. sanfranciscensis, as well as for standardizing the quality of traditional French breads. Copyright © 2015 Elsevier B.V. All rights reserved.
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USDA-ARS?s Scientific Manuscript database
Chemical properties of whole organic matter (OM) and its dissolved organic matter (DOM) fraction from six dominant macrophytes in Lake Dianchi were comparatively characterized, and their environmental implications were discussed. Significant differences in chemical composition of the OM samples were...
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USDA-ARS?s Scientific Manuscript database
Cryptolepis sanguinolenta (Lindl.) Schlechter (Periplocaceae) is an herbaceous plant used in traditional medicine to treat malaria and populations of the species are diminishing due to overharvesting and lack of conservation. Co-dominant microsatellite markers that can be used to characterize geneti...
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Waudby, Helen P; Petit, Sophie
2017-05-01
Deserts exhibit extreme climatic conditions. Small desert-dwelling vertebrates have physiological and behavioral adaptations to cope with these conditions, including the ability to seek shelter. We investigated the temperature (T) and relative humidity (RH) regulating properties of the soil cracks that characterize the extensive cracking-clay landscapes of arid Australia, and the extent of their use by 2 small marsupial species: fat-tailed and stripe-faced dunnarts (Sminthopsis crassicaudata and Sminthopsis macroura). We measured hourly (over 24-h periods) the T and RH of randomly-selected soil cracks compared to outside conditions, during 2 summers and 2 winters. We tracked 17 dunnarts (8 Sminthopsis crassicaudata and 9 Sminthopsis macroura) to quantify their use of cracks. Cracks consistently moderated microclimate, providing more stable conditions than available from non-crack points, which often displayed comparatively dramatic fluctuations in T and RH. Both dunnart species used crack shelters extensively. Cracks constitute important shelter for small animals during extreme conditions by providing a stable microclimate, which is typically cooler than outside conditions in summer and warmer in winter. Cracks likely play a fundamental sheltering role by sustaining the physiological needs of small mammal populations. Globally, cracking-clay areas are dominated by agricultural land uses, including livestock grazing. Management of these systems should focus not only on vegetation condition, but also on soil integrity, to maintain shelter resources for ground-dwelling fauna. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.
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NASA Astrophysics Data System (ADS)
Cuttitta, Angela; Quinci, Enza Maria; Patti, Bernardo; Bonomo, Sergio; Bonanno, Angelo; Musco, Marianna; Torri, Marco; Placenti, Francesco; Basilone, Gualtiero; Genovese, Simona; Armeri, Grazia Maria; Spanò, Antonina; Arculeo, Marco; Mazzola, Antonio; Mazzola, Salvatore
2016-09-01
Fish larvae data collected in year 2009 were used to examine the effects of particular environmental conditions on the structure of larval assemblages in two oligotrophic Mediterranean areas (the Southern Tyrrhenian Sea and the Strait of Sicily). For this purpose, relationships with environmental variables (temperature, salinity and fluorescence), zooplankton biomass, water circulation and bathymetry are discussed. Hydrodynamic conditions resulted very differently between two study areas. The Southern Tyrrhenian Sea was characterized by moderate shallow circulation compared to the Strait of Sicily. In this framework, distribution pattern of larval density in the Tyrrhenian Sea was mainly driven by bathymetry, due to spawning behavior of adult fish. There, results defined four assemblages: two coastal assemblages dominated by pelagic and demersal families and two oceanic assemblages dominated by mesopelagic species more abundant in western offshore and less abundant in eastern offshore. The assemblage variations in the western side was related to the presence of an anti-cyclonic gyre in the northern side of the Gulf of Palermo, while in the eastern side the effect of circulation was not very strong and the environmental conditions rather than the dispersal of species determined the larval fish communities structure. Otherwise in the Strait of Sicily the currents were the main factor governing the concentration and the assemblage structure. In fact, the distribution of larvae was largely consistent with the branch of the Atlantic Ionian Stream (AIS). Moreover, very complex oceanographic structures (two cyclonic circulations in the western part of the study area and one anti-cyclonic circulation in the eastern part) caused the formation of uncommon spatial distribution of larval fish assemblages, only partially linked to bathymetry of the study area. Typically coastal larvae (pelagic families: Engraulidae and Clupeidae) were mostly concentrated in the offshore areas and off Capo Passero, where the presence of a thermo-haline front maintained their position in an area with favourable conditions for larval fish feeding and growth.
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Durstewitz, Daniel; Seamans, Jeremy K
2008-11-01
There is now general consensus that at least some of the cognitive deficits in schizophrenia are related to dysfunctions in the prefrontal cortex (PFC) dopamine (DA) system. At the cellular and synaptic level, the effects of DA in PFC via D1- and D2-class receptors are highly complex, often apparently opposing, and hence difficult to understand with regard to their functional implications. Biophysically realistic computational models have provided valuable insights into how the effects of DA on PFC neurons and synaptic currents as measured in vitro link up to the neural network and cognitive levels. They suggest the existence of two discrete dynamical regimes, a D1-dominated state characterized by a high energy barrier among different network patterns that favors robust online maintenance of information and a D2-dominated state characterized by a low energy barrier that is beneficial for flexible and fast switching among representational states. These predictions are consistent with a variety of electrophysiological, neuroimaging, and behavioral results in humans and nonhuman species. Moreover, these biophysically based models predict that imbalanced D1:D2 receptor activation causing extremely low or extremely high energy barriers among activity states could lead to the emergence of cognitive, positive, and negative symptoms observed in schizophrenia. Thus, combined experimental and computational approaches hold the promise of allowing a detailed mechanistic understanding of how DA alters information processing in normal and pathological conditions, thereby potentially providing new routes for the development of pharmacological treatments for schizophrenia.
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Tan, X L; Wang, X K; Geckeis, H; Rabung, Th
2008-09-01
To identify the effect of humic acid (HA) and fulvic acid (FA) on the sorption mechanism of Eu(III) on organic--inorganic colloids in the environment at a molecular level, surface adsorbed/ complexed Eu(III) on hydrous alumina, HA-, and FA-hydrous alumina hybrids were characterized by using X-ray photoelectron spectroscopy (XPS) and time-resolved laser fluorescence spectroscopy (TRLFS). The experiments were performed in 0.1 mol/L KNO3 or 0.1 mol/L NaClO4 under ambient conditions. The pH values were varied between 2 and 11 at a fixed Eu(III) concentration of 6.0 x 10(-7) mol/L and 4.3 x 10(-5) mol/L. The different Eu(III)/FA(HA)/hydrous alumina complexes were characterized by their fluorescence emission spectra ((5D0-F1)/ (5D0 --> 7F2)) and binding energy of Eu(III). Inner-sphere surface complexation may contribute mainly to Eu(III) sorption on hydrous alumina, and a ternary surface complex is formed at the HA/ FA-hydrous alumina hybrid surfaces. The sorption and species of Eu(III) in ternary Eu-HA/FA-hydrous alumina systems are not dominated by either HA/FA or hydrous alumina, but are dominated by both HA/FA and hydrous alumina. The results are important for understanding the sorption mechanisms and the nature of surface adsorbed Eu(III) species and trivalent chemical homologues of Eu(III) in the natural environment.
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Leaf temperature and stomatal influences on sap velocity diurnal hysteresis in the Amazon rainforest
NASA Astrophysics Data System (ADS)
Jardine, K.; Gimenez, B.; Negron Juarez, R. I.; Koven, C.; Powell, T.; Higuchi, N.; Chambers, J.; Varadharajan, C.
2016-12-01
In order to improve our ability to predict terrestrial evapotranspiration fluxes, an understanding of the interactions between plant physiology and environmental conditions is necessary, but remains poorly characterized, especially in tropical ecosystems. In this study we show a tight positive correlation between sap velocity (at 1 m of height) and leaf surface temperature (LST, 20-30 m of height) in canopy dominant trees in two primary rainforest sites in the Amazon basin (Santarém and Manaus, Brazil). As leaf temperatures varied throughout the day, sap velocity responded with little delay (<15 min). Positive sap velocity was often observed at night, but also closely followed night time LSTs. When plotted versus LST, sap velocity showed an exponential increase before reaching a reflection point and a plateau and is characterized as a sigmoidal curve, in all observed trees. Moreover, a clear diurnal hysteresis in sap velocity was evident with morning periods showing higher temperature sensitivities than afternoon and night periods. Diurnal leaf observations showed a morning peak in stomatal conductance ( 10:00-10:30), but a mid-day to afternoon peak in transpiration and leaf temperature (12:00-14:00). Our observations suggest the sap velocity-LST hysteresis pattern arises due to the temporal offset between stomatal conductance and vapor pressure deficits (VPD) and demonstrates the dominating effect of VPD over stomatal conductance in maintaining high transpiration/sap flow rates under elevated temperatures. Our results have important implications for modeling tropical forest transpiration and suggests the possibility of predicting evapotranspiration fluxes at the ecosystem to regional scales based on remote sensed vegetation temperature.
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Masyuko, Rachel N; Lanni, Eric J; Driscoll, Callan M; Shrout, Joshua D; Sweedler, Jonathan V; Bohn, Paul W
2014-11-21
Bacteria growing as surface attached biofilms differ significantly from planktonic cells in several important traits that are reflected in the spatiotemporal organization of the cells and the extracellular polymeric substances they secrete. The structural and chemical features that define these biofilms are explored here using a combination of matrix-assisted laser desorption ionization mass spectrometry (MALDI MS) and confocal Raman microspectroscopies (CRM) to characterize and compare the composition and distribution of biomolecules found in biofilms and planktonic cells of the bacterium Pseudomonas aeruginosa. Three-day old P. aeruginosa biofilms show dramatic differences in molecular composition compared to planktonic cultures. CRM reveals that wild-type planktonic cell Raman spectra are characterized by bands linked to cellular constituents and are dominated by contributions from DNA- and RNA-related bands. In contrast, biofilm spectra are dominated by bands characteristic of glycolipids - rhamnolipids - polysaccharides and by secreted proteins. LDI MS was applied in turn to identify the rhamnolipids present in the biofilm. Experiments were also conducted using an acyl homoserine lactone quorum sensing-deficient mutant (ΔlasIΔrhlI), which is incapable of producing rhamnolipids. CRM and LDI MS analyses revealed that while molecular composition of the planktonic quorum sensing-deficient cells is similar to that of the wild-type planktonic cells, several compositional differences are observed in the mutant after biofilm growth, including complete absence of detectable rhamnolipids. CRM vibrational spectra of the mutant cells are very similar for planktonic and biofilm growth conditions, indicating that biofilm formation is greatly hindered in the absence of functioning quorum sensing machinery.
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Nearshore substrate and morphology offshore of the Elwha River, Washington
Warrick, J.A.; Cochrane, G.R.; Sagy, Y.; Gelfenbaum, G.
2008-01-01
The planned removal of two dams on the Elwha River, Washington, will likely increase river sediment flux to the coast, which may alter coastal habitats through sedimentation and turbidity. It is therefore important to characterize the current habitat conditions near the river mouth, so that future changes can be identified. Here we provide combined sonar and video mapping results of approximately 20 km2 of seafloor offshore of the Elwha River collected with the purpose to characterize nearshore substrate type and distribution prior to dam removal. These combined data suggest that the nearshore of the western delta and Freshwater Bay are dominated by coarse sediment (sand, gravel, cobble, and boulders) and bedrock outcrops; no fine-grained sediment (mud or silt) was identified within the survey limits. The substrate is generally coarser in Freshwater Bay and on the western flank of the delta, where boulders and bedrock outcrops occur, than directly offshore and east of the river mouth. High variation in substrate was observed within much of the study area, however, and distinct boulder fields, gravel beds and sand waves were observed with spatial scales of 10-100 m. Gravel beds and sand waves suggest that sediment transport is active in the study area, presumably in response to tidal currents and waves. Both historic (1912) and recent (1989-2004) distributions of Bull Kelp (Nereocystis sp.) beds were preferentially located along the boulder and bedrock substrates of Freshwater Bay. Although kelp has also been mapped in areas dominated by gravel and sand substrate, it typically has smaller canopy areas and lower temporal persistence in these regions.
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Choi, Jungyill; Harvey, Judson W.; Conklin, Martha H.
2000-01-01
The fate of contaminants in streams and rivers is affected by exchange and biogeochemical transformation in slowly moving or stagnant flow zones that interact with rapid flow in the main channel. In a typical stream, there are multiple types of slowly moving flow zones in which exchange and transformation occur, such as stagnant or recirculating surface water as well as subsurface hyporheic zones. However, most investigators use transport models with just a single storage zone in their modeling studies, which assumes that the effects of multiple storage zones can be lumped together. Our study addressed the following question: Can a single‐storage zone model reliably characterize the effects of physical retention and biogeochemical reactions in multiple storage zones? We extended an existing stream transport model with a single storage zone to include a second storage zone. With the extended model we generated 500 data sets representing transport of nonreactive and reactive solutes in stream systems that have two different types of storage zones with variable hydrologic conditions. The one storage zone model was tested by optimizing the lumped storage parameters to achieve a best fit for each of the generated data sets. Multiple storage processes were categorized as possessing I, additive; II, competitive; or III, dominant storage zone characteristics. The classification was based on the goodness of fit of generated data sets, the degree of similarity in mean retention time of the two storage zones, and the relative distributions of exchange flux and storage capacity between the two storage zones. For most cases (>90%) the one storage zone model described either the effect of the sum of multiple storage processes (category I) or the dominant storage process (category III). Failure of the one storage zone model occurred mainly for category II, that is, when one of the storage zones had a much longer mean retention time (ts ratio > 5.0) and when the dominance of storage capacity and exchange flux occurred in different storage zones. We also used the one storage zone model to estimate a “single” lumped rate constant representing the net removal of a solute by biogeochemical reactions in multiple storage zones. For most cases the lumped rate constant that was optimized by one storage zone modeling estimated the flux‐weighted rate constant for multiple storage zones. Our results explain how the relative hydrologic properties of multiple storage zones (retention time, storage capacity, exchange flux, and biogeochemical reaction rate constant) affect the reliability of lumped parameters determined by a one storage zone transport model. We conclude that stream transport models with a single storage compartment will in most cases reliably characterize the dominant physical processes of solute retention and biogeochemical reactions in streams with multiple storage zones.
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An Experimental Investigation of Infiltration in a Shallow Karst System
NASA Astrophysics Data System (ADS)
Bellin, A.; Becker, M. W.; Borsato, A.
2008-12-01
We present preliminary results of a field investigation of infiltration in a karst terrain in the Dolomiti del Brenta ridge, North-East Italy. A sub-horizontal cave 40 m deep drains a small catchment of about 6,000 m2 at the elevation of 2,600 m a.s.l. in a fractured triassic dolomite formation. The surface is characterized by a thin soil cover, vertical fractures, and karst collapse features (dolines). Water infiltrates through the dolines and vertical shafts which are connected to an unsaturated cave system. Within the cave, water discharge, temperature, and electric conductivity are recorded. Meterological conditions were measured at a weather station installed within the cave contributing area. Furthermore, in order to study residence time distribution in the summer 2007 we conducted a tracer experiment by injecting fluorescein in one of the dolines and recording its concentration within the cave. The recorded time series are statistically non-stationary with a wavelet spectrum strongly variable in time. However, a closer inspection of the water discharge wavelet spectrum reveals three periods in which the local power spectrum is nearly time invariant: November-April, April -July and August-October. In the first period we observe a slow exponential decline of the water discharge. The season is dominated by release of water from subsurface storage, in absence of surface input. In the second period, the system is dominated by snowmelt with a time lag that reduces from 9 hours to 1 hour through the melting season. The variation in time apparently corresponds with reduction in snowpack thickness. In the final period, the system is dominated by rainfall. The lag time in this period is on the order of 1 hour or less. These results suggest that in this hydrologic system the distribution of the residence time, and thus the transfer function relating input to output signals, is not state invariant, as typically assumed in applications. Rather, hydraulic residence time is seasonally variable and linked to both surface and subsurface hydrologic conditions.
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Kokkinakis, Kostas; Loizou, Philipos C
2011-09-01
The purpose of this study is to determine the relative impact of reverberant self-masking and overlap-masking effects on speech intelligibility by cochlear implant listeners. Sentences were presented in two conditions wherein reverberant consonant segments were replaced with clean consonants, and in another condition wherein reverberant vowel segments were replaced with clean vowels. The underlying assumption is that self-masking effects would dominate in the first condition, whereas overlap-masking effects would dominate in the second condition. Results indicated that the degradation of speech intelligibility in reverberant conditions is caused primarily by self-masking effects that give rise to flattened formant transitions. © 2011 Acoustical Society of America
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NASA Astrophysics Data System (ADS)
Reiss, Martin; Zaenker, Stefan; Chifflard, Peter
2017-04-01
Since 2002, spring habitat investigations and mapping campaigns were executed in the National Park Kellerwald-Edersee (Central Germany, Federal State of Hesse). 693 springs are currently assessed within an ongoing ecological-faunistic inventory with additional data about physico-chemical properties and hydrological conditions of the spring water (e.g. pH value, electrical conductivity, water temperature and flow velocity). 1029 taxa are found so far, whereby, springs are investigated as a land-water ecotone where aquatic and terrestrial fauna was detected. Data continuously stored in the data base of the Hesse Biospeleological Register (Reiss, Steiner, Zaenker 2009) coupled with a Geographical Information System. Spring habitats can be characterized as mostly undisturbed, oligotrophic and near natural structured with heterogenous microhabitat conditions. Nearly 90 percentages of the springs are helocrenic habitats with a diffuse and low discharge, temporally dried out, but staying under wet substrate conditions. 85 percentages of the springs occurring under forests without any cultivation or forest management use. Coarse mineral substrate dominating slightly, followed up by fine mineral substrate types. Most common mineral related microhabitats are microlithal (coarse gravel) and psammopelal (fine silt). The high microhabitat diversity depends mostly to forest correlated organic substrate types. Here, most dominant are CPOM (leaf litter) and woody debris (deadwood). Substrate richness is significantly correlated to preferential fauna colonization of different, partly rare or endangered species. Undisturbed conditions are also characterized by relative cold stenothermy and oligotrophy. The latter is indicated by a very low electrical conductivity (Mean: 236 µS*cm-1). The mean annual water temperature is 9° Celsius with low amplitudes of max. and min. values. Spring water is nearly neutral and there is no identifiable trend in acidification (mean pH value of 6,9). Due to nearly unaffected ecohydrological properties, in particular: relative consistently cold water temperature with low amplitudes (cold stenothermy), mostly low flow velocity and an intermittent discharge regime a very unique and specific adapted spring fauna composition for the German low mountain ranges can be characterized. Cold stenothermic and spring related species are very frequent in relative occurrence and abundance. We analyzed a map based and representative distribution for the entire large-scale protected area of the National Park Kellerwald-Edersee according to Bythinella dunkeri (spring snail), Crenobia alpina (planarian), Crunoecia irrorata (caddisfly) and Niphargus schellenbergi (groundwater amphipod). We discuss the potential of ecohydrological research on possible climate change predictions and consequences on the distribution of cold stenothermic and spring dwelling species within the special context of research goals in National Parks. Here, an idea of a new approach for an ecohydrological assessment by indicating cold stenothermic taxa is given as an outlook. References Reiss, M., Steiner, H. & S. Zaenker (2009): The Biospeleological Register of the Hesse Federation for Cave and Karst Research (Germany). Cave and Karst Science 35(1), pp.25-34.
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2013-01-01
Background The permanent dominance of Planktothrix-like сyanobacteria has been often reported for shallow eutrophic\\hypertrophic lakes in central Europe in summer\\autumn. However studies on phytoplankton growth under ice cover in nutrient-rich lakes are very scarce. Lake Nero provides a good example of the contrasting seasonal extremes in environmental conditions. Moreover, the ecosystem underwent a catastrophic transition from eutrophic to hypertrophic 2003–05, with dominance of filamentous cyanobacteria in summer\\autumn. Towards the end of the period of ice cover, there is an almost complete lack of light and oxygen but abundance in nutrients, especially ammonium nitrogen, soluble reactive phosphorus and total phosphorus in lake Nero. The aim of the present study was to describe species composition and abundance of the phytoplankton, in relation to the abiotic properties of the habitat to the end of winters 1999–2010. We were interested if Planktothrix-like сyanobacteria kept their dominant role under the ice conditions or only survived, and how did the under-ice phytoplankton community differ from year to year. Results Samples collected contained 172 algal taxa of sub-generic rank. Abundance of phytoplankton varied widely from very low to the bloom level. Cyanobacteria (Limnothrix, Pseudanabaena, Planktothrix) were present in all winter samples but did not always dominate. Favourable conditions included low winter temperature, thicker ice, almost complete lack of oxygen and high ammonium concentration. Flagellates belonging to Euglenophyta and Cryptophyta dominated in warmer winters, when phosphorus concentrations increased. Conclusion A full picture of algal succession in the lake may be obtained only if systematic winter observations are taken into account. Nearly anoxic conditions, severe light deficiency and high concentration of biogenic elements present a highly selective environment for phytoplankton. Hypertrophic water bodies of moderate zone covered by ice in winter and dominated by Planktothrix - like сyanobacteria in summer/autumn may follow several scenarios in the end of winter. It may be intense proliferation сyanobacteria normally dominating in summer, or the switch to the other species like the euglenoids and cryptomonads flagellates, or almost total depletion of phytoplankton. PMID:24079446
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Beauty parlor stroke syndrome due to a bone fragment from an osteophyte of the atlas: case report.
Kameda, Takuya; Otani, Koji; Tamura, Takamitsu; Konno, Shinichi
2018-04-01
Beauty parlor stroke syndrome (BPSS) is a rare condition characterized by mechanical impingement of a vertebral artery (VA) during neck rotation and/or hyperextension followed by vertebrobasilar insufficiency. However, there have been no reports of BPSS in which the cause of mechanical impingement was identified and no cases for which surgical treatment was reported. The authors report the case of a 56-year-old Japanese man who presented with presyncope that occurred during cervical extension. Given the possibility of vertebrobasilar insufficiency, digital subtraction angiography and CT angiography were performed. These studies revealed that the right VA was hypoplastic and the left VA was dominant. Moreover, in the position of cervical extension, the dominant left VA showed constriction caused by a bone fragment of an osteophyte of the atlas. Removal of the bone fragment was performed. Postoperative left vertebral angiography showed improvement of blood flow in the extended position, and the presyncope completely disappeared. The pathomechanism of this case was a bone fragment compressing the left VA in the C-1 groove during neck extension. In BPSS patients with recurrent transient symptoms, the possibility of this mechanism of VA constriction by a free bone fragment should be considered.
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Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting.
Meier, Dimitri V; Bach, Wolfgang; Girguis, Peter R; Gruber-Vodicka, Harald R; Reeves, Eoghan P; Richter, Michael; Vidoudez, Charles; Amann, Rudolf; Meyerdierks, Anke
2016-12-01
Deep-sea hydrothermal vents are highly dynamic habitats characterized by steep temperature and chemical gradients. The oxidation of reduced compounds dissolved in the venting fluids fuels primary production providing the basis for extensive life. Until recently studies of microbial vent communities have focused primarily on chemolithoautotrophic organisms. In our study, we targeted the change of microbial community compositions along mixing gradients, focusing on distribution and capabilities of heterotrophic microorganisms. Samples were retrieved from different venting areas within the Menez Gwen hydrothermal field, taken along mixing gradients, including diffuse fluid discharge points, their immediate surroundings and the buoyant parts of hydrothermal plumes. High throughput 16S rRNA gene amplicon sequencing, fluorescence in situ hybridization, and targeted metagenome analysis were combined with geochemical analyses. Close to diffuse venting orifices dominated by chemolithoautotrophic Epsilonproteobacteria, in areas where environmental conditions still supported chemolithoautotrophic processes, we detected microbial communities enriched for versatile heterotrophic Alpha- and Gammaproteobacteria. The potential for alkane degradation could be shown for several genera and yet uncultured clades. We propose that hotspots of chemolithoautotrophic life support a 'belt' of heterotrophic bacteria significantly different from the dominating oligotrophic microbiota of the deep sea. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.
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Tectonic-driven climate change and the diversification of angiosperms.
Chaboureau, Anne-Claire; Sepulchre, Pierre; Donnadieu, Yannick; Franc, Alain
2014-09-30
In 1879, Charles Darwin characterized the sudden and unexplained rise of angiosperms during the Cretaceous as an "abominable mystery." The diversification of this clade marked the beginning of a rapid transition among Mesozoic ecosystems and floras formerly dominated by ferns, conifers, and cycads. Although the role of environmental factors has been suggested [Coiffard C, Gómez B (2012) Geol Acta 10(2):181-188], Cretaceous global climate change has barely been considered as a contributor to angiosperm radiation, and focus was put on biotic factors to explain this transition. Here we use a fully coupled climate model driven by Mesozoic paleogeographic maps to quantify and discuss the impact of continental drift on angiosperm expansion and diversification. We show that the decrease of desertic belts between the Triassic and the Cretaceous and the subsequent onset of long-lasting humid conditions during the Late Cretaceous were driven by the breakup of Pangea and were contemporaneous with the first rise of angiosperm diversification. Positioning angiosperm-bearing fossil sites on our paleobioclimatic maps shows a strong match between the location of fossil-rich outcrops and temperate humid zones, indicating that climate change from arid to temperate dominance may have set the stage for the ecological expansion of flowering plants.
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Laboratory-Produced X-Ray Photoionized Plasmas for Astrophysics Exploration
NASA Astrophysics Data System (ADS)
Goyon, Clement; Le Pape, Sebastien; Liedahl, Duane; Ma, Tammy; Berzak-Hopkins, Laura; Reverdin, Charles; Rousseaux, Christophe; Renaudin, Patrick; Blancard, Christophe; Nottet, Edouard; Bidault, Niels; Mancini, Roberto; Koenig, Michel
2015-11-01
X-ray photoionized plasmas are rare in the laboratory, but of broad importance in astrophysical objects such as active galactic nuclei, x-ray binaries. Indeed, existing models are not yet able to accurately describe these plasmas where ionization is driven by radiation rather than electron collisions. Here, we describe an experiment on the LULI2000 facility whose versatility allows for measuring the X-ray absorption of the plasma while independently probing its electron density and temperature. The bright X-ray source is created by the two main beams focused inside a gold hohlraum and is used to photoionise a Neon gas jet. Then, a thin gold foil serves as a source of backlit photons for absorption spectroscopy. The transmitted spectrum through the plasma is collected by a crystal spectrometer. We will present the experimental setup used to characterize both plasma conditions and X-ray emission. Then we will show the transmitted spectra through the plasma to observe the transition from collision dominated to radiation dominated ionization and compare it to model predictions. This work was performed under the auspices of the U.S.Department of Energy by Lawrence Livermore Natl Lab under Contract No. DE-AC52-07NA27344.
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CHANGES IN BACTERIAL COMPOSITION OF BIOFILM IN A ...
This study examined the development of bacterial biofilms within a metropolitan distribution system. The distribution system is fed with different source water (i.e., groundwater, GW and surface water, SW) and undergoes different treatment processes in separate facilities. The biofilm community was characterized using 16S rRNA gene clone libraries and functional potential analysis, generated from total DNA extracted from coupons in biofilm annular reactors fed with onsite drinking water for up to eighteen months. Significant differences in the bacterial community structure were observed between GW and SW. Representatives that explained the dissimilarity between service areas were associated with Betaproteobacteria, Alphaproteobacteria, Actinobacteria, Gammaproteobacteria, and Firmicutes. After nine months the biofilm bacterial community from both areas were dominated by Mycobacterium species. The distribution of the dominant OTU (Mycobacterium) positively correlated with the drinking water distribution system (DWDS) temperature, but no clear relationship was seen with free chlorine residual, pH, turbidity or total organic carbon (TOC). The results suggest that biofilm microbial communities harbor distinct and diverse bacterial communities, and that source water, treatment processes and environmental conditions may play an important role in shaping the bacterial community in the distribution system. On the other hand, several bacterial groups were present i
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Peña-Becerril, Juan C; Monroy-Ata, Arcadio; Orozco-Almanza, María del Socorro; García-Amador, Esther Matiana
2016-06-01
Mexico is dominated by arid or semi-arid ecosystems, predominantly characterized as xeric shrublands. These areas are frequently deteriorated due to agriculture or over-grazing by livestock (sheep and goats). The vegetation type mainly consists of thorny plant species, and among these, the dominant one in overgrazed areas is catclaw (Mimosa biuncifera). This is a nurse plant that facilitates establishment of other vegetation and promotes plant succession. Catclaw plants form a mutualistic association with arbuscular mycorrhizal fungi (AMF), which improves uptake of nutrients and water. The objective of this study was to determine the effect of inoculating catclaw plants with native AMF and starting their growth under a low water availability treatment in a greenhouse, and later transplanting them to field conditions of drought and deterioration. Field plants were evaluated according to their survivorship and growth. The seeds of catclaw plants and soil with AMF spores were collected in the Mezquital Valley of Hidalgo State, in Central Mexico. Seedlings were grown in individual pots in a greenhouse. The experimental design consisted of two levels of pot irrigation, wet (W) and dry (D), as well as the presence (M+) or absence (M-) of AMF inoculum, with 20 replicates for each treatment. The following plant parameters were recorded every week: height, number of leaves and pinnae, and mean diameter of coverage. After 20 weeks in the greenhouse, determination was made of fresh and dry biomass, relative growth rate (RGR), root/shoot ratio, real evapotranspiration (RET), water-use efficiency (WUE), and percentage of mycorrhizal colonization. The remaining plants growing under the dry treatment (M+ and M-) were then transplanted to a semi-arid locality in the Mezquital Valley. During one year, monthly records were kept of their height, number of leaves, mean diameter of coverage and survival. Results showed that compared to greenhouse plants under other treatments, those under the wet mycorrhizal (WM+) treatment were taller, had more pinnae, and were characterized by greater coverage, faster RGR, and greater fresh and dry biomass. Moreover, inoculated plants (WM+ and DM+) showed higher WUE than those uninoculated (WM- and DM-, respectively). After one year in field conditions, there was a higher survival rate for previously inoculated versus uninoculated plants. Hence, mycorrhization of M. biuncifera with native AMF inoculum increased plant efficiency in biomass production, thus favoring establishment and survival in field conditions. We concluded that inoculation of catclaw plants is recommendable for revegetation programs in deteriorated semi-arid zones.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Sanders, B.P.; Mall, S.; Dennis, L.B.
1997-10-01
A study was conducted to investigate the fatigue behavior of a cross-ply metal matrix composite subjected to fully-reversed, strain-controlled fatigue cycling at elevated temperature. The stress-strain response, maximum and minimum stresses, and modulus during cycling were analyzed to characterize the macro-mechanical behavior. Additionally, microscopy and fractography were conducted to identify damage mechanisms. Damage always initiated in the 90 deg plies, but the governing factor in the fatigue life was damage in the 0 deg plies. The dominant failure mode was fracturing of fibers in the 0 deg plies when the maximum strain was greater than 0.55%, but the dominant failuremore » mode was matrix cracking when the maximum strain was less than 0.55%. Combining the fatigue life data with the macro-mechanical and microscopic observations, a fatigue life diagram was developed and partitioned into three regions. These regions showed relationships between the maximum applied strain and the dominant damage mechanisms. Also, on a strain range basis, the fatigue lives of the specimens tested under the strain-controlled mode in this study were compared with its counterpart under the load-controlled mode of the previous study. It was found that the fatigue lives for these two conditions were the same within the experimental scatter. The MMC tested in this investigation was the Ti-15V-3Cr-3Al-3Sn titanium alloy reinforced with 36 volume percent of silicon carbide fibers (SCS-6).« less
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Possible roles of uncultured archaea in carbon cycling in methane-seep sediments
NASA Astrophysics Data System (ADS)
Yoshinaga, Marcos Y.; Lazar, Cassandre S.; Elvert, Marcus; Lin, Yu-Shih; Zhu, Chun; Heuer, Verena B.; Teske, Andreas; Hinrichs, Kai-Uwe
2015-09-01
Studies on microbial carbon cycling uniformly confirm that anaerobic methane-oxidizing archaea (ANME) and sulfate-reducing bacteria represent the dominant and most active fraction of the sedimentary microbial community in methane-seep sediments. However, little is known about other frequently observed and abundant microbial taxa, their role in carbon cycling and association with the anaerobic oxidation of methane (AOM). Here, we provide a comprehensive characterization of stable carbon isotopes (δ13C) from several intact polar lipid (IPL) classes and metabolite pools in a downcore profile at a cold seep within the oxygen minimum zone off Pakistan. We aimed to evaluate microbial carbon metabolism using IPLs in relation to redox conditions, metabolites and 16S rRNA gene libraries. The 13C-depleted signature of carbon pools and microbial metabolites in pore waters (e.g., dissolved inorganic carbon, lactate and acetate) demonstrated high accumulation of AOM-associated biomass and subsequent turnover thereof. ANMEs accounted for a small fraction of the archaeal 16S rRNA gene survey, whereas sequences of other uncultured benthic archaea dominated the clone libraries, particularly the Marine Benthic Group D. On the basis of lipid diversity and carbon isotope information, we suggest that structurally diverse phospho- and glycolipids, including the recently identified unsaturated tetraethers that are particularly abundant in this setting, are likely derived from archaea other than ANMEs. Through the evaluation of δ13C values of individual IPL, our results indicate heterotrophy as a possible metabolic pathway of archaea in these AOM-dominated sediments.
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Nonrainfall water origins and formation mechanisms
Kaseke, Kudzai Farai; Wang, Lixin; Seely, Mary K.
2017-01-01
Dryland ecosystems cover 40% of the total land surface on Earth and are defined broadly as zones where precipitation is considerably less than the potential evapotranspiration. Nonrainfall waters (for example, fog and dew) are the least-studied and least-characterized components of the hydrological cycle, although they supply critical amounts of water for dryland ecosystems. The sources of nonrainfall waters are largely unknown for most systems. In addition, most field and modeling studies tend to consider all nonrainfall inputs as a single category because of technical constraints, which hinders prediction of dryland responses to future warming conditions. This study uses multiple stable isotopes (2H, 18O, and 17O) to show that fog and dew have multiple origins and that groundwater in drylands can be recycled via evapotranspiration and redistributed to the upper soil profile as nonrainfall water. Surprisingly, the non–ocean-derived (locally generated) fog accounts for more than half of the total fog events, suggesting a potential shift from advection-dominated fog to radiation-dominated fog in the fog zone of the Namib Desert. This shift will have implications on the flora and fauna distribution in this fog-dependent system. We also demonstrate that fog and dew can be differentiated on the basis of the dominant fractionation (equilibrium and kinetic) processes during their formation using the 17O-18O relationship. Our results are of great significance in an era of global climate change where the importance of nonrainfall water increases because rainfall is predicted to decline in many dryland ecosystems. PMID:28345058
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Controls on the Karaha-Telaga Bodas geothermal reservoir, Indonesia
Nemcok, M.; Moore, J.N.; Christensen, Carl; Allis, R.; Powell, T.; Murray, B.; Nash, G.
2007-01-01
Karaha-Telaga Bodas is a partially vapor-dominated, fracture-controlled geothermal system located adjacent to Galunggung Volcano in western Java, Indonesia. The geothermal system consists of: (1) a caprock, ranging from several hundred to 1600 m in thickness, and characterized by a steep, conductive temperature gradient and low permeability; (2) an underlying vapor-dominated zone that extends below sea level; and (3) a deep liquid-dominated zone with measured temperatures up to 353 ??C. Heat is provided by a tabular granodiorite stock encountered at about 3 km depth. A structural analysis of the geothermal system shows that the effective base of the reservoir is controlled either by the boundary between brittle and ductile deformational regimes or by the closure and collapse of fractures within volcanic rocks located above the brittle/ductile transition. The base of the caprock is determined by the distribution of initially low-permeability lithologies above the reservoir; the extent of pervasive clay alteration that has significantly reduced primary rock permeabilities; the distribution of secondary minerals deposited by descending waters; and, locally, by a downward change from a strike-slip to an extensional stress regime. Fluid-producing zones are controlled by both matrix and fracture permeabilities. High matrix permeabilities are associated with lacustrine, pyroclastic, and epiclastic deposits. Productive fractures are those showing the greatest tendency to slip and dilate under the present-day stress conditions. Although the reservoir appears to be in pressure communication across its length, fluid, and gas chemistries vary laterally, suggesting the presence of isolated convection cells. ?? 2006 CNR.
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Patterns of seasonal variation in lagoonal macrozoobenthic assemblages (Mellah lagoon, Algeria).
Magni, Paolo; Draredja, Brahim; Melouah, Khalil; Como, Serena
2015-08-01
In coastal lagoons, many studies indicated that macrozoobenthic assemblages undergo marked temporal fluctuations as related to the strong environmental variability of these systems. However, most of these studies have not assessed the seasonal patterns of these fluctuations and none of them has investigated the consistency of this variation in different areas within the same lagoon system. In this study, we assessed patterns of variation at multiple temporal (date, season and year) scales in two different areas in the coastal lagoon of Mellah (northeast Algeria). These areas (hereafter Shore and Center) are representative of two different environments typically found in coastal lagoons. The Shore (water depth of about 1.5-2 m) is characterized by relatively higher hydrodynamics, sand to silty-sand sediments and the presence of vegetation (Ruppia maritima), the Center (water depth of about 3-3.5 m) is characterized by mud to sandy-mud, organic-enriched sediments due to fine particle accumulation. Results showed two distinct patterns of seasonal variation in Shore and Center assemblages for two consecutive years. In Shore, species richness (S), total abundance (N) and the abundance of several dominant taxa were highest in summer and/or autumn. This pattern can be related to the local environmental conditions maintaining relatively well oxidized conditions, while increasing food availability, and favoring the recruitment of species and individuals in summer/autumn. On the contrary in Center, S was lowest in summer and autumn, and N and the abundance of fewer dominant taxa were lowest in summer. In Center, the bivalve Loripes lucinalis showed a 10-fold increase from summer to autumn in both years, likely related to the lagoon's hydrodynamics favoring larval transport and settlement in the central sector of the lagoon. Overall, the seasonal variation found in Center followed a regression/recovery pattern typical of opportunistic assemblages occurring in confined organic-enriched environments. In conclusion, our results provide new insight into the patterns of seasonal variation in lagoon soft-sediment benthos and highlight the importance of local environmental conditions on this variation. This study provides a valuable tool for adopting appropriate monitoring strategies in these systems, with special reference to Southern-Eastern Mediterranean lagoons which are expected to suffer from increasing coastal development and human pressure in the near future. Copyright © 2015 Elsevier Ltd. All rights reserved.
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Sakurada, Takeshi; Nakajima, Takeshi; Morita, Mitsuya; Hirai, Masahiro; Watanabe, Eiju
2017-01-01
It is believed that motor performance improves when individuals direct attention to movement outcome (external focus, EF) rather than to body movement itself (internal focus, IF). However, our previous study found that an optimal individual attentional strategy depended on motor imagery ability. We explored whether the individual motor imagery ability in stroke patients also affected the optimal attentional strategy for motor control. Individual motor imagery ability was determined as either kinesthetic- or visual-dominant by a questionnaire in 28 patients and 28 healthy-controls. Participants then performed a visuomotor task that required tracing a trajectory under three attentional conditions: no instruction (NI), attention to hand movement (IF), or attention to cursor movement (EF). Movement error in the stroke group strongly depended on individual modality dominance of motor imagery. Patients with kinesthetic dominance showed higher motor accuracy under the IF condition but with concomitantly lower velocity. Alternatively, patients with visual dominance showed improvements in both speed and accuracy under the EF condition. These results suggest that the optimal attentional strategy for improving motor accuracy in stroke rehabilitation differs according to the individual dominance of motor imagery. Our findings may contribute to the development of tailor-made pre-assessment and rehabilitation programs optimized for individual cognitive abilities. PMID:28094320
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Graph Embedding Techniques for Bounding Condition Numbers of Incomplete Factor Preconditioning
NASA Technical Reports Server (NTRS)
Guattery, Stephen
1997-01-01
We extend graph embedding techniques for bounding the spectral condition number of preconditioned systems involving symmetric, irreducibly diagonally dominant M-matrices to systems where the preconditioner is not diagonally dominant. In particular, this allows us to bound the spectral condition number when the preconditioner is based on an incomplete factorization. We provide a review of previous techniques, describe our extension, and give examples both of a bound for a model problem, and of ways in which our techniques give intuitive way of looking at incomplete factor preconditioners.
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Aguilera, Moisés A; Navarrete, Sergio A
2012-01-01
Despite the great interest in characterizing the functional structure and resilience of functional groups in natural communities, few studies have examined in which way the roles and relationships of coexisting species change during community succession, a fundamental and natural process that follows the release of new resources in terrestrial and aquatic ecosystems. Variation in algal traits that characterize different phases and stages of community succession on rocky shores are likely to influence the magnitude, direction of effects, and the level of redundancy and complementarity in the diverse assemblage of herbivores. Two separate field experiments were conducted to quantify per capita and population effects and the functional relationship (i.e., redundancy or complementarity) of four herbivore species found in central Chile during early and late algal succession. The first experiment examined grazer effects on the colonization and establishment of early-succession algal species. The second experiment examined effects on the late-successional, dominant corticated alga Mazzaella laminarioides. Complementary laboratory experiments with all species and under natural environmental conditions allowed us to further characterize the collective effects of these species. We found that, during early community succession, all herbivore species had similar effects on the ephemeral algae, ulvoids, but only during the phase of colonization. Once these algae were established, only a subset of the species was able to control their abundance. During late succession, only the keyhole limpet Fissurella crassa could control corticated Mazzaella. The functional relationships among these species changed dramatically from redundant effects on ephemeral algae during early colonization, to a more complementary role on established early-successional algae, to a dominant (i.e., keystone) effect on late succession. This study highlights that functional relationship within consumer assemblages can vary at different phases and times of community succession. Differentiation in herbivore roles emphasizes the need to evaluate consumer's impacts through different times of community succession, and through experimental manipulations to make even broad predictions about the resilience or vulnerability of diverse intertidal assemblages to human disturbances.
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Air Quality and Meteorological Boundary Conditions during the MCMA-2003 Field Campaign
NASA Astrophysics Data System (ADS)
Sosa, G.; Arriaga, J.; Vega, E.; Magaña, V.; Caetano, E.; de Foy, B.; Molina, L. T.; Molina, M. J.; Ramos, R.; Retama, A.; Zaragoza, J.; Martínez, A. P.; Márquez, C.; Cárdenas, B.; Lamb, B.; Velasco, E.; Allwine, E.; Pressley, S.; Westberg, H.; Reyes, R.
2004-12-01
A comprehensive field campaign to characterize photochemical smog in the Mexico City Metropolitan Area (MCMA) was conducted during April 2003. An important number of equipment was deployed all around the urban core and its surroundings to measure gas and particles composition from the various sources and receptor sites. In addition to air quality measurements, meteorology variables were also taken by regular weather meteorological stations, tethered balloons, radiosondes, sodars and lidars. One important issue with regard to the field campaign was the characterization of the boundary conditions in order to feed meteorological and air quality models. Four boundary sites were selected to measure continuously criteria pollutants, VOC and meteorological variables at surface level. Vertical meteorological profiles were measured at three other sites : radiosondes in Tacubaya site were launched every six hours daily; tethered balloons were launched at CENICA and FES-Cuautitlan sites according to the weather conditions, and one sodar was deployed at UNAM site in the south of the city. Additionally to these measurements, two fixed meteorological monitoring networks deployed along the city were available to complement these measurements. In general, we observed that transport of pollutants from the city to the boundary sites changes every day, according to the coupling between synoptic and local winds. This effect were less important at elevated sites such as Cerro de la Catedral and ININ, where synoptic wind were more dominant during the field campaign. Also, local sources nearby boundary sites hide the influence of pollution coming from the city some days, particularly at the La Reforma site.
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Nicholas J. Brazee; Daniel L. Lindner; Shawn Fraver; Anthony W. D' Amato; Amy M. Milo
2012-01-01
To better understand the potential long-term effects of biomass harvesting on biodiversity, the polyporoid fungi community was characterized from 120 plots in four aspen-dominated forests in Minnesota. Four deadwood variables (substratum species, substratum type, decay class and diameter class) were recorded for each polyporoid species occurrence. A total of 2358...
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Physical hydrology and the effects of forest harvesting in the Pacific Northwest: a review.
R. Dan Moore; S.M. Wondzell
2005-01-01
The Pacific Northwest encompasses a range of hydrologic regimes that can be broadly characterized as either coastal (where rain and rain on snow are dominant) or interior (where snowmelt is dominant). Forest harvesting generally increases the fraction of precipitation that is available to become streamflow, increases rates of snowmelt, and modifies the runoff pathways...
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Nitao, J.J.; Buscheck, T.A.; Chesnut, D.A.
1992-04-01
We apply our work on fracture- and matrix-dominated flow to develop a conceptual model of hydrological flow processes in the unsaturated zone at Yucca Mountain. The possibility of fracture-dominated flow is discussed, and various deductions are made on its impact on natural and total system performance, site characterization activities, and site suitability determination.
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Simulation of quaking aspen potential fire behavior in Northern Utah, USA
R. Justin DeRose; A. Joshua Leffler
2014-01-01
Current understanding of aspen fire ecology in western North America includes the paradoxical characterization that aspen-dominated stands, although often regenerated following fire, are âfire-proofâ. We tested this idea by predicting potential fire behavior across a gradient of aspen dominance in northern Utah using the Forest Vegetation Simulator and the Fire and...
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NASA Astrophysics Data System (ADS)
Chen, X.; Zachara, J. M.; Vermeul, V. R.; Freshley, M.; Hammond, G. E.
2015-12-01
The behavior of a persistent uranium plume in an extended groundwater- river water (GW-SW) interaction zone at the DOE Hanford site is dominantly controlled by river stage fluctuations in the adjacent Columbia River. The plume behavior is further complicated by substantial heterogeneity in physical and geochemical properties of the host aquifer sediments. Multi-scale field and laboratory experiments and reactive transport modeling were integrated to understand the complex plume behavior influenced by highly variable hydrologic and geochemical conditions in time and space. In this presentation we (1) describe multiple data sets from field-scale uranium adsorption and desorption experiments performed at our experimental well-field, (2) develop a reactive transport model that incorporates hydrologic and geochemical heterogeneities characterized from multi-scale and multi-type datasets and a surface complexation reaction network based on laboratory studies, and (3) compare the modeling and observation results to provide insights on how to refine the conceptual model and reduce prediction uncertainties. The experimental results revealed significant spatial variability in uranium adsorption/desorption behavior, while modeling demonstrated that ambient hydrologic and geochemical conditions and heterogeneities in sediment physical and chemical properties both contributed to complex plume behavior and its persistence. Our analysis provides important insights into the characterization, understanding, modeling, and remediation of groundwater contaminant plumes influenced by surface water and groundwater interactions.
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Cortisol modulates men's affiliative responses to acute social stress.
Berger, Justus; Heinrichs, Markus; von Dawans, Bernadette; Way, Baldwin M; Chen, Frances S
2016-01-01
The dominant characterization of the physiological and behavioral human stress reaction is the fight-or-flight response. On the other hand, it has been suggested that social affiliation during stressful times ("tend-and-befriend") also represents a common adaptive response to stress, particularly for women. In the current study, we investigate the extent to which men may also show affiliative responses following acute stress. In addition, we examine a potential neuroendocrine modulator of the hypothesized affiliative response. Eighty male students (forty dyads) were recruited to undergo either the Trier Social Stress Test for Groups (TSST-G) or a non-stressful control situation. Subsequently, participants completed a dyadic interaction task and were then asked to report their feelings of psychological closeness to their interaction partner. Although participants assigned to the stress condition did not differ overall on psychological closeness from participants assigned to the control condition, participants with high cortisol responses to the stressor showed significantly higher ratings of psychological closeness to their interaction partner than participants with low cortisol responses. Our findings suggest that men may form closer temporary bonds following stressful situations that are accompanied by a significant cortisol response. We suggest that the traditional characterization of the male stress response in terms of "fight-or-flight" may be incomplete, and that social affiliation may in fact represent a common, adaptive response to stress in men. Copyright © 2015 Elsevier Ltd. All rights reserved.
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Selective removal of uranium ions from contaminated waters using modified-X nanozeolite.
Shakur, H R; Rezaee Ebrahim Saraee, Kh; Abdi, M R; Azimi, G
2016-12-01
In order to efficiently remove of uranium anionic species (which are the most dominant species of uranium in natural water at neutral pH) from contaminated waters, nano-NaX zeolite was synthesized and then modified using various divalent cations (Mg 2+ , Ca 2+ , Mn 2+ ) and ZnO nanoparticles (from 1.7 to 10.3wt%). Different characterization techniques of XRF, XRD, FE-SEM, TEM, FT-IR, and AAS were used to characterize the final synthesized absorbents. Sorption experiments by batch technique were done to study the effect of solid-liquid ratio, initial uranium concentration, contact time and temperature under neutral condition of pH and presence of all anions and cations which are available in the waters. Results showed that although nano-NaX zeolite due to its negative framework charge had a low sorption capacity for adsorption of uranium anionic species, but modification of parent nano-NaX zeolite with ZnO nanoparticles and various cations effectively improved its uranium adsorption capacity. Also, results showed that under optimum condition of pH=7.56, contact time of 60min at 27°C with solid-liquid ratio of 20g/L a maximum uranium removal efficiency of 99.7% can be obtained in the presence of all anions and cations which are available in the drinking waters by NaX/ZnO nanocomposite. Copyright © 2016 Elsevier Ltd. All rights reserved.
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NASA Astrophysics Data System (ADS)
Gasparini, Sarah Pereira; Vilela, Claudia Gutterres
2017-12-01
The paleoecology and distribution of benthic foraminiferal assemblages were analyzed in the core 2-MU-1-RJ well, drilled in the Paraíba do Sul Deltaic Complex, Rio de Janeiro (Brazil). An abundant assemblage was found in the upper portion of the well core, inferred to be pleistocenic deposits. The coastal dynamic was recognized from five biofacies based on clusters, the Planktonic/Benthic (P/B) ratios and indicator species distribution in the core. Several biofacies were identified along the core depending on the species dominance. From the bottom to the top of the core, the biofacies succession represents the environmental changes in the coastal area associated to sea-level oscillations. The biofacies ABP dominated by Ammonia parkinsoniana and Bolivina spp. and Pararotalia cananeiaensis represents an inner shelf environment; biofacies QP dominated by shelf miliolids species; biofacies PGH, dominated by P. cananeiaensis, Gavelinopsis praegeri, and Hanzawaia nitidula, represents the estuary complex with middle or outer shelf influence; biofacies QL represents hypersaline waters dominated by lagoonal miliolids; and biofacies HP characterized by Haynesina germanica and P. cananeiaensis is associated with paralic environments. Marine ingressions are recorded and those biofacies show the pleistocenic coastal hydrodinamic in the deltaic complex. The foraminiferal biofacies contribute with detailed information to sedimentary facies previously characterized in the study area by the reconstruction of paleoenvironment succession.
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Antimicrobial Applications of Ambient--Air Plasmas
NASA Astrophysics Data System (ADS)
Pavlovich, Matthew John
The emerging field of plasma biotechology studies the applications of the plasma phase of matter to biological systems. "Ambient-condition" plasmas created at or near room temperature and atmospheric pressure are especially promising for biomedical applications because of their convenience, safety to patients, and compatibility with existing medical technology. Plasmas can be created from many different gases; plasma made from air contains a number of reactive oxygen and nitrogen species, or RONS, involved in various biological processes, including immune activity, signaling, and gene expression. Therefore, ambient-condition air plasma is of particular interest for biological applications. To understand and predict the effects of treating biological systems with ambient-air plasma, it is necessary to characterize and measure the chemical species that these plasmas produce. Understanding both gaseous chemistry and the chemistry in plasma-treated aqueous solution is important because many biological systems exist in aqueous media. Existing literature about ambient-air plasma hypothesizes the critical role of reactive oxygen and nitrogen species; a major aim of this dissertation is to better quantify RONS by produced ambient-air plasma and understand how RONS chemistry changes in response to different plasma processing conditions. Measurements imply that both gaseous and aqueous chemistry are highly sensitive to operating conditions. In particular, chemical species in air treated by plasma exist in either a low-power ozone-dominated mode or a high-power nitrogen oxide-dominated mode, with an unstable transition region at intermediate discharge power and treatment time. Ozone (O3) and nitrogen oxides (NO and NO2, or NOx) are mutually exclusive in this system and that the transition region corresponds to the transition from ozone- to nitrogen oxides-mode. Aqueous chemistry agrees well with to air plasma chemistry, and a similar transition in liquid-phase composition from ozone mode to nitrogen oxides mode occurs as the discharge power increases. One prominent example of plasma biotechnology is the use of plasma-derived reactive species as a novel disinfectant. Ambient-air plasma is an attractive means of disinfection because it is non-thermal, expends a small amount of power, and requires only air and electricity to operate. Both solid surfaces and liquid volumes can be effectively and efficiently decontaminated by the reactive oxygen and nitrogen species that plasma generates. Dry surfaces are decontaminated most effectively by the plasma operating in NOx mode and less effectively in ozone mode, with the weakest antibacterial effects in the transition region, and neutral reactive species are more influential in surface disinfection than charged particles. Aqueous bacterial inactivation correlates well with ozone concentration, suggesting that ozone is the dominant species for bacterial inactivation under the condition of a low-power discharge. Alternatively, air plasma operating in the higher-power, nitrogen oxides-rich mode can create a persistently antibacterial solution. Finally, when near-UV (UVA) treatment follows plasma treatment of bacterial suspension, the antimicrobial effect exceeds the effect predicted from the two treatments alone, and addition of nitrite to aqueous solution, followed by photolysis of nitrite by UVA photons, is hypothesized as the primary mechanism of synergy. The results presented in this dissertation underscore the dynamic nature of air plasma chemistry and the importance of careful chemical characterization of plasma devices intended for biological applications. The complexity of atmospheric pressure plasma devices, and their sensitivity to subtle differences in design and operation, can lead to different results with different mechanisms.
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Leaching of Arsenic from Granular Ferric Hydroxide Residuals under Mature Landfill Conditions
Ghosh, Amlan; Mukiibi, Muhammed; Sáez, A. Eduardo; Ela, Wendell P.
2008-01-01
Most arsenic bearing solid residuals (ABSR) from water treatment will be disposed in non-hazardous landfills. The lack of an appropriate leaching test to predict arsenic mobilization from ABSR creates a need to evaluate the magnitude and mechanisms of arsenic release under landfill conditions. This work studies the leaching of arsenic and iron from a common ABSR, granular ferric hydroxide, in a laboratory-scale column that simulates the biological and physicochemical conditions of a mature, mixed solid waste landfill. The column operated for approximately 900 days and the mode of transport as well as chemical speciation of iron and arsenic changed with column age. Both iron and arsenic were readily mobilized under the anaerobic, reducing conditions. During the early stages of operation, most arsenic and iron leaching (80% and 65%, respectively) was associated with suspended particulate matter and iron was lost proportionately faster than arsenic. In later stages, while the rate of iron leaching declined, the arsenic leaching rate increased greater than 7-fold. The final phase was characterized by dissolved species leaching. Future work on the development of standard batch leaching tests should take into account the dominant mobilization mechanisms identified in this work: solid associated transport, reductive sorbent dissolution, and microbially mediated arsenic reduction. PMID:17051802
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Leaching of arsenic from granular ferric hydroxide residuals under mature landfill conditions.
Ghosh, Amlan; Mukiibi, Muhammed; Sáez, A Eduardo; Ela, Wendell P
2006-10-01
Most arsenic bearing solid residuals (ABSR) from water treatment will be disposed in nonhazardous landfills. The lack of an appropriate leaching test to predict arsenic mobilization from ABSR creates a need to evaluate the magnitude and mechanisms of arsenic release under landfill conditions. This work studies the leaching of arsenic and iron from a common ABSR, granular ferric hydroxide, in a laboratory-scale column that simulates the biological and physicochemical conditions of a mature, mixed solid waste landfill. The column operated for approximately 900 days and the mode of transport as well as chemical speciation of iron and arsenic changed with column age. Both iron and arsenic were readily mobilized under the anaerobic, reducing conditions. During the early stages of operation, most arsenic and iron leaching (80% and 65%, respectively) was associated with suspended particulate matter, and iron was lost proportionately faster than arsenic. In later stages, while the rate of iron leaching declined, the arsenic leaching rate increased greater than 7-fold. The final phase was characterized by dissolved species leaching. Future work on the development of standard batch leaching tests should take into account the dominant mobilization mechanisms identified in this work: solid associated transport, reductive sorbent dissolution, and microbially mediated arsenic reduction.
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Global-scale patterns of forest fragmentation
Riitters, K.; Wickham, J.; O'Neill, R.; Jones, B.; Smith, E.
2000-01-01
We report an analysis of forest fragmentation based on 1-km resolution land-cover maps for the globe. Measurements in analysis windows from 81 km 2 (9 ?? 9 pixels, "small" scale) to 59,049 km 2 (243 ?? 243 pixels, "large" scale) were used to characterize the fragmentation around each forested pixel. We identified six categories of fragmentation (interior, perforated, edge, transitional, patch, and undetermined) from the amount of forest and its occurrence as adjacent forest pixels. Interior forest exists only at relatively small scales; at larger scales, forests are dominated by edge and patch conditions. At the smallest scale, there were significant differences in fragmentation among continents; within continents, there were significant differences among individual forest types. Tropical rain forest fragmentation was most severe in North America and least severe in Europe - Asia. Forest types with a high percentage of perforated conditions were mainly in North America (five types) and Europe - Asia (four types), in both temperate and subtropical regions. Transitional and patch conditions were most common in 11 forest types, of which only a few would be considered as "naturally patchy" (e.g., dry woodland). The five forest types with the highest percentage of interior conditions were in North America; in decreasing order, they were cool rain forest, coniferous, conifer boreal, cool mixed, and cool broadleaf. Copyright ?? 2000 by The Resilience Alliance.
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To better characterize the relationships between both adjacent hydrology/ precipitation and nutrient processing with groundwater level fluctuations, continuous water level data are being collected across three dominant wetland types, each with varied landscape characteristics. Th...
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Genetic analysis reveals the diversity of larval Gobiidae in a temperate estuary.
Ojaveer, H; Gross, R; Laur, K; Arula, T; Klais, R
2017-10-01
Using molecular tools to examine Gobiidae, the second most abundant taxon in ichthyoplankton samples in the Gulf of Riga (Baltic Sea), the sand goby Pomatoschistus minutus was the most abundant taxon (82% of all individuals analysed), the common goby Pomatoschistus microps constituted 12% and the black goby Gobius niger 6%. The spatiotemporal distribution of P. microps and G. niger indicated a preference for habitats closer to the river inlet and their abundances increased slightly towards the end of the sampling period in summer. The species composition was interpreted in the context of the prevailing habitat conditions, characterized by extremely low water transparency, low salinity, limited spread of vegetated area and dominance of sandy-muddy substrata. © 2017 The Fisheries Society of the British Isles.
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Energy Savings Potential and RD&D Opportunities for Non-Vapor-Compression HVAC Technologies
DOE Office of Scientific and Technical Information (OSTI.GOV)
none,
While vapor-compression technologies have served heating, ventilation, and air-conditioning (HVAC) needs very effectively, and have been the dominant HVAC technology for close to 100 years, the conventional refrigerants used in vapor-compression equipment contribute to global climate change when released to the atmosphere. This Building Technologies Office report: --Identifies alternatives to vapor-compression technology in residential and commercial HVAC applications --Characterizes these technologies based on their technical energy savings potential, development status, non-energy benefits, and other factors affecting end-user acceptance and their ability to compete with conventional vapor-compression systems --Makes specific research, development, and deployment (RD&D) recommendations to support further development ofmore » these technologies, should DOE choose to support non-vapor-compression technology further.« less
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NASA Astrophysics Data System (ADS)
Naftel, S. J.; Coulthard, I.; Sham, T. K.; Xu, D.-X.; Erickson, L.; Das, S. R.
1999-05-01
We report a Ni and Si L3,2-edge x-ray absorption near edge structures (XANES) study of nickel-silicon interaction in submicron (0.15 and 0.2 μm) lines on a n-Si(100) wafer as well as a series of well characterized Ni-Si blanket films. XANES measurements recorded in both total electron yield and soft x-ray fluorescence yield indicate that under the selected silicidation conditions, the more desirable low resistivity phase, NiSi, is indeed the dominant phase in the subhalf-micron lines although the formation of this phase is less complete as the line becomes narrower and this is accompanied by a Ni rich surface.
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Fernández-Pradas, J M; Clèries, L; Sardin, G; Morenza, J L
2002-05-01
Calcium phosphate coatings were deposited by pulsed laser ablation with a radiation of 355 nm from a Nd:YAG laser. All the coatings were obtained at the same conditions, but deposition was stopped after different number of pulses to get coatings with different thickness. The influence of thickness in the structural and mechanical properties of the coatings was investigated. Coatings structure was characterised by scanning electron microscopy, grazing incidence X-ray diffractometry and Raman spectroscopy. The mechanical properties were evaluated by scratch test. The morphology of the coatings is dominated by the presence of droplets. The coatings are composed mainly of hydroxyapatite, alpha tricalcium phosphate and amorphous calcium phosphate. Thinner coatings withstand higher loads of failure in the scratch test.
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Chemistry of water collected from an unventilated drift, Yucca Mountain, Nevada
Marshall, B.D.; Oliver, T.A.; Peterman, Z.E.
2007-01-01
Water samples (referred to as puddle water samples) were collected from the surfaces of a conveyor belt and plastic sheeting in the unventilated portion of the Enhanced Characterization of the Repository Block (ECRB) Cross Drift in 2003 and 2005 at Yucca Mountain, Nevada. The chemistry of these puddle water samples is very different than that of pore water samples from borehole cores in the same region of the Cross Drift or than seepage water samples collected from the Exploratory Studies Facility tunnel in 2005. The origin of the puddle water is condensation on surfaces of introduced materials and its chemistry is dominated by components of the introduced materials. Large CO2 concentrations may be indicative of localized chemical conditions induced by biologic activity. ?? 2007 Materials Research Society.
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Anaerobic Cultures from Preserved Tissues of Baby Mammoth
NASA Technical Reports Server (NTRS)
Pikuta, Elena V.; Hoover, Richard B.; Fisher, Daniel
2011-01-01
Microbiological analysis of several cold-preserved tissue samples from the Siberian baby mammoth known as Lyuba revealed a number of culturable bacterial strains that were grown on anaerobic media at 4 C. Lactic acid produced by LAB (lactic acid bacteria) group, usually by members of the genera Carnobacterium and Lactosphera, appears to be a wonderful preservative that prevents other bacteria from over-dominating a system. Permafrost and lactic acid preserved the body of this one-month old baby mammoth and kept it in exceptionally good condition, resulting in this mammoth being the most complete such specimen ever recovered. The diversity of novel anaerobic isolates was expressed on morphological, physiological and phylogenetic levels. Here we discuss the specifics of the isolation of new strains, differentiation from trivial contamination, and preliminary results for the characterization of cultures.
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van de Crommenacker, Janske; Komdeur, Jan; Richardson, David S.
2011-01-01
In cooperatively breeding species, helping close relatives may provide important fitness benefits. However, helping can be energetically expensive and may result in increased generation of reactive oxygen species. Consequently, an oxidant/antioxidant imbalance can lead to higher oxidative stress susceptibility. Given the potential costs of helping, it may be that only individuals with a sufficiently good body condition and/or stable oxidative balance can afford to help. Knowledge about relationships between social status and oxidative balance in cooperatively breeding systems is still limited. Studying these relationships is important for understanding the costs of helping and physiological pressures of reproduction. Here we evaluate the relationship between helping behaviour, body condition and oxidative balance in a wild population of the cooperatively breeding Seychelles warbler (Acrocephalus sechellensis). In this species, some subordinate individuals help dominant birds with the rearing of young, while others refrain from any assistance. We assessed body condition and oxidative parameters of birds of different social status caught during different breeding stages. We found that, prior to breeding, female subordinates that did not subsequently help (non-helpers) had significantly lower body condition and higher ROMs (reactive oxygen metabolites) than helpers and dominants. During the later stages of breeding, body condition was low in dominants and helpers, but high in non-helpers. Differences in oxidative balance between individuals of different social status were found only during nest care: Dominant males occupied with guarding behaviours tended to have relatively high oxidative stress susceptibility. Furthermore, dominant and helper females showed elevated antioxidant capacity (measured as OXY) in the weeks just prior to egg-laying, possibly representing a change in their reproductive physiology. The results imply that an individuals' oxidative balance may be influenced by factors related to reproduction, which can differ with sex and—within cooperative breeding systems—social status. PMID:22046283
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Cool but counterproductive: interactive, Web-based risk communications can backfire.
Zikmund-Fisher, Brian J; Dickson, Mark; Witteman, Holly O
2011-08-25
Paper-based patient decision aids generally present risk information using numbers and/or static images. However, limited psychological research has suggested that when people interactively graph risk information, they process the statistics more actively, making the information more available for decision making. Such interactive tools could potentially be incorporated in a new generation of Web-based decision aids. The objective of our study was to investigate whether interactive graphics detailing the risk of side effects of two treatments improve knowledge and decision making over standard risk graphics. A total of 3371 members of a demographically diverse Internet panel viewed a hypothetical scenario about two hypothetical treatments for thyroid cancer. Each treatment had a chance of causing 1 of 2 side effects, but we randomly varied whether one treatment was better on both dimensions (strong dominance condition), slightly better on only one dimension (mild dominance condition), or better on one dimension but worse on the other (trade-off condition) than the other treatment. We also varied whether respondents passively viewed the risk information in static pictograph (icon array) images or actively manipulated the information by using interactive Flash-based animations of "fill-in-the-blank" pictographs. Our primary hypothesis was that active manipulation would increase respondents' ability to recognize dominance (when available) and choose the better treatment. The interactive risk graphic conditions had significantly worse survey completion rates (1110/1695, 65.5% vs 1316/1659, 79.3%, P < .001) than the static image conditions. In addition, respondents using interactive graphs were less likely to recognize and select the dominant treatment option (234/380, 61.6% vs 343/465, 73.8%, P < .001 in the strong dominance condition). Interactivity, however visually appealing, can both add to respondent burden and distract people from understanding relevant statistical information. Decision-aid developers need to be aware that interactive risk presentations may create worse outcomes than presentations of static risk graphic formats.
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Cool but Counterproductive: Interactive, Web-Based Risk Communications Can Backfire
Dickson, Mark; Witteman, Holly O
2011-01-01
Background Paper-based patient decision aids generally present risk information using numbers and/or static images. However, limited psychological research has suggested that when people interactively graph risk information, they process the statistics more actively, making the information more available for decision making. Such interactive tools could potentially be incorporated in a new generation of Web-based decision aids. Objective The objective of our study was to investigate whether interactive graphics detailing the risk of side effects of two treatments improve knowledge and decision making over standard risk graphics. Methods A total of 3371 members of a demographically diverse Internet panel viewed a hypothetical scenario about two hypothetical treatments for thyroid cancer. Each treatment had a chance of causing 1 of 2 side effects, but we randomly varied whether one treatment was better on both dimensions (strong dominance condition), slightly better on only one dimension (mild dominance condition), or better on one dimension but worse on the other (trade-off condition) than the other treatment. We also varied whether respondents passively viewed the risk information in static pictograph (icon array) images or actively manipulated the information by using interactive Flash-based animations of “fill-in-the-blank” pictographs. Our primary hypothesis was that active manipulation would increase respondents’ ability to recognize dominance (when available) and choose the better treatment. Results The interactive risk graphic conditions had significantly worse survey completion rates (1110/1695, 65.5% vs 1316/1659, 79.3%, P < .001) than the static image conditions. In addition, respondents using interactive graphs were less likely to recognize and select the dominant treatment option (234/380, 61.6% vs 343/465, 73.8%, P < .001 in the strong dominance condition). Conclusions Interactivity, however visually appealing, can both add to respondent burden and distract people from understanding relevant statistical information. Decision-aid developers need to be aware that interactive risk presentations may create worse outcomes than presentations of static risk graphic formats. PMID:21868349
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NASA Astrophysics Data System (ADS)
Andersen, G.; Dubinsky, E. A.; Chakraborty, R.; Hollibaugh, J. T.; Hazen, T. C.
2012-12-01
The Deepwater Horizon oil spill created large plumes of dispersed oil and gas that remained deep in the water column and stimulated growth of several deep-sea bacteria that can degrade hydrocarbons at cold temperatures. We tracked microbial community composition before, during and after the 83-day spill to determine relationships between microbial dynamics, and hydrocarbon and dissolved-oxygen concentrations. Dominant bacteria in plumes shifted drastically over time and were dependent on the concentration of hydrocarbons, and the relative quantities of insoluble and soluble oil fractions. Unmitigated flow from the wellhead early in the spill resulted in the highest concentrations of oil and relatively more n-alkanes suspended in the plume as small oil droplets. These conditions resulted in near complete dominance by alkane-degrading Oceanospirillales, Pseudomonas and Shewanella. Six-weeks into the spill overall hydrocarbon concentrations in the plume decreased and were almost entirely composed of BTEX after management actions reduced emissions into the water column. These conditions corresponded with the emergence of Colwellia, Pseudoalteromonas, Cycloclasticus and Halomonas that are capable of degrading aromatic compounds. After the well was contained dominant plume bacteria disappeared within two weeks after the spill and transitioned to an entirely different set of bacteria dominated by Flavobacteria, Methylophaga, Alteromonas and Rhodobacteraceae that were found in anomalous oxygen depressions throughout August and are prominent degraders of both high molecular weight organic matter as well as hydrocarbons. Bio-Sep beads amended with volatile hydrocarbons from MC-252 oil were used from August through September to create hydrocarbon-amended traps for attracting oil-degrading microbes in situ. Traps were placed at multiple depths on a drilling rig about 600-m from the original MC-252 oil spill site. Microbes were isolated on media using MC-252 oil as the sole carbon source and characterized. Pure cultures were obtained from bacteria similar to those found to dominate hydrocarbon plumes and anomalous oxygen depressions by molecular community analysis. Respirometry studies confirmed that the isolates were able to metabolize the MC-252 oil. Our results from both molecular and culture analysis indicate that indigenous psychrophilic consortia of microorganisms thriving at 5°C from the oil-plume depth water were able to rapidly respond to dispersed oil at depth. The microbial community was highly dynamic and structured by changes in hydrocarbon composition over time. The spill caused sustained alterations in subsurface microbial communities and impacted the deep ocean for at least months after well containment.
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Early-onset severe hereditary sensory and autonomic neuropathy type 1 with S331F SPTLC1 mutation.
Suh, Bum Chun; Hong, Young Bin; Nakhro, Khriezhanuo; Nam, Soo Hyun; Chung, Ki Wha; Choi, Byung-Ok
2014-02-01
Hereditary sensory and autonomic neuropathy type I (HSAN I) is an autosomal dominant disease characterized by prominent sensory impairment, resulting in foot ulcers or amputations and has a juvenile to adult onset. The major underlying causes of HSAN I are mutations in SPTLC1, which encodes the first subunit of serine palmitoyltransferase (SPT). To date, there have been no reports with regard to an HSAN patient of Korean origin. In this report we discussed an HSAN I patient with a missense mutation in SPTLC1 (c.992C>T: p.S331F). The patient had noticed frequent falls, lower leg weakness and hand tremors at age five. The patient also presented with foot ulcers, muscle hypotrophy, cataracts, hoarseness, vocal cord palsy and respiratory difficulties and succumbed to the condition at the age of 28 years. In accordance with previous reports, a mutation in Ser331 in the present patient was associated with early-onset and a severe phenotype. Therefore, Ser331 in SPTLC1 is a crucial amino acid, which characterizes the HSAN I phenotype.
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Zhou, Zhengzhen; Liu, Zhanfei; Guo, Laodong
2013-01-15
The fluorescence EEM technique, PARAFAC modeling, and hydrocarbon composition were used to characterize oil components and to examine the chemical evolution and degradation pathways of Macondo crude oil under controlled laboratory conditions. Three major fluorescent oil components were identified, with Ex/Em maxima at 226/328, 262/315, and 244/366 nm, respectively. An average degradation half-life of ∼20 d was determined for the oil components based on fluorescence EEM and hydrocarbon composition measurements, showing a dynamic chemical evolution and transformation of the oil during degradation. Dispersants appeared to change the chemical characteristics of oil, to shift the fluorescence EEM spectra, and to enhance the degradation of low-molecular-weight hydrocarbons. Photochemical degradation played a dominant role in the transformation of oil components, likely an effective degradation pathway of oil in the water column. Results from laboratory experiments should facilitate the interpretation of field-data and provide insights for understanding the fate and transport of oil components in the Gulf of Mexico. Copyright © 2012 Elsevier Ltd. All rights reserved.
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UV laser-induced cross-linking in peptides
Leo, Gabriella; Altucci, Carlo; Bourgoin-Voillard, Sandrine; Gravagnuolo, Alfredo M.; Esposito, Rosario; Marino, Gennaro; Costello, Catherine E.; Velotta, Raffaele; Birolo, Leila
2013-01-01
RATIONALE The aim of this study was to demonstrate, and to characterize by high resolution mass spectrometry, that it is possible to preferentially induce covalent cross-links in peptides by using high energy femtosecond UV laser pulses. The cross-link is readily formed only when aromatic amino acids are present in the peptide sequence. METHODS Three peptides, xenopsin, angiotensin I, interleukin, individually or in combination, were exposed to high energy femtosecond UV laser pulses, either alone or in the presence of spin trapping molecules, the reaction products being characterized by high resolution mass spectrometry. RESULTS High resolution mass spectrometry and spin trapping strategies showed that cross-linking occurs readily, proceeds via a radical mechanism, and is the highly dominant reaction, proceeding without causing significant photo-damage in the investigated range of experimental parameters. CONCLUSIONS High energy femtosecond UV laser pulses can be used to induce covalent cross-links between aromatic amino acids in peptides, overcoming photo-oxidation processes, that predominate as the mean laser pulse intensity approaches illumination conditions achievable with conventional UV light sources. PMID:23754800
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NASA Technical Reports Server (NTRS)
Margolis, Stephen B.; Sacksteder, Kurt (Technical Monitor)
2000-01-01
A pulsating form of hydrodynamic instability has recently been shown to arise during liquid-propellant deflagration in those parameter regimes where the pressure-dependent burning rate is characterized by a negative pressure sensitivity. This type of instability can coexist with the classical cellular, or Landau form of hydrodynamic instability, with the occurrence of either dependent on whether the pressure sensitivity is sufficiently large or small in magnitude. For the inviscid problem, it has been shown that, when the burning rate is realistically allowed to depend on temperature as well as pressure, sufficiently large values of the temperature sensitivity relative to the pressure sensitivity causes like pulsating form of hydrodynamic instability to become dominant. In that regime, steady, planar burning becomes intrinsically unstable to pulsating disturbances whose wave numbers are sufficiently small. This analysis is extended to the fully viscous case, where it is shown that although viscosity is stabilizing for intermediate and larger wave number perturbations, the intrinsic pulsating instability for small wave numbers remains. Under these conditions, liquid-propellant combustion is predicted to be characterized by large unsteady cells along the liquid/gas interface.
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Synaptic UNC13A protein variant causes increased neurotransmission and dyskinetic movement disorder.
Lipstein, Noa; Verhoeven-Duif, Nanda M; Michelassi, Francesco E; Calloway, Nathaniel; van Hasselt, Peter M; Pienkowska, Katarzyna; van Haaften, Gijs; van Haelst, Mieke M; van Empelen, Ron; Cuppen, Inge; van Teeseling, Heleen C; Evelein, Annemieke M V; Vorstman, Jacob A; Thoms, Sven; Jahn, Olaf; Duran, Karen J; Monroe, Glen R; Ryan, Timothy A; Taschenberger, Holger; Dittman, Jeremy S; Rhee, Jeong-Seop; Visser, Gepke; Jans, Judith J; Brose, Nils
2017-03-01
Munc13 proteins are essential regulators of neurotransmitter release at nerve cell synapses. They mediate the priming step that renders synaptic vesicles fusion-competent, and their genetic elimination causes a complete block of synaptic transmission. Here we have described a patient displaying a disorder characterized by a dyskinetic movement disorder, developmental delay, and autism. Using whole-exome sequencing, we have shown that this condition is associated with a rare, de novo Pro814Leu variant in the major human Munc13 paralog UNC13A (also known as Munc13-1). Electrophysiological studies in murine neuronal cultures and functional analyses in Caenorhabditis elegans revealed that the UNC13A variant causes a distinct dominant gain of function that is characterized by increased fusion propensity of synaptic vesicles, which leads to increased initial synaptic vesicle release probability and abnormal short-term synaptic plasticity. Our study underscores the critical importance of fine-tuned presynaptic control in normal brain function. Further, it adds the neuronal Munc13 proteins and the synaptic vesicle priming process that they control to the known etiological mechanisms of psychiatric and neurological synaptopathies.
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Synaptic UNC13A protein variant causes increased neurotransmission and dyskinetic movement disorder
Lipstein, Noa; Verhoeven-Duif, Nanda M.; Calloway, Nathaniel; van Hasselt, Peter M.; Pienkowska, Katarzyna; van Haelst, Mieke M.; van Empelen, Ron; Cuppen, Inge; van Teeseling, Heleen C.; Evelein, Annemieke M.V.; Vorstman, Jacob A.; Jahn, Olaf; Duran, Karen J.; Monroe, Glen R.; Ryan, Timothy A.; Taschenberger, Holger; Rhee, Jeong-Seop; Visser, Gepke; Jans, Judith J.
2017-01-01
Munc13 proteins are essential regulators of neurotransmitter release at nerve cell synapses. They mediate the priming step that renders synaptic vesicles fusion-competent, and their genetic elimination causes a complete block of synaptic transmission. Here we have described a patient displaying a disorder characterized by a dyskinetic movement disorder, developmental delay, and autism. Using whole-exome sequencing, we have shown that this condition is associated with a rare, de novo Pro814Leu variant in the major human Munc13 paralog UNC13A (also known as Munc13-1). Electrophysiological studies in murine neuronal cultures and functional analyses in Caenorhabditis elegans revealed that the UNC13A variant causes a distinct dominant gain of function that is characterized by increased fusion propensity of synaptic vesicles, which leads to increased initial synaptic vesicle release probability and abnormal short-term synaptic plasticity. Our study underscores the critical importance of fine-tuned presynaptic control in normal brain function. Further, it adds the neuronal Munc13 proteins and the synaptic vesicle priming process that they control to the known etiological mechanisms of psychiatric and neurological synaptopathies. PMID:28192369
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2015-06-01
Distribution Unlimited 13. SUPPLEMENTARY NOTES 14. ABSTRACT Neurofibromatosis type 2 (NF2) is an autosomal dominant disorder characterized by the... Neurofibromatosis type 2 (NF2) is an autosomal dominant disorder characterized by the development of brain tumors of peripheral nervous system origin...in autophagy and tumorigenesis, and will to contribute to the development of new therapies means against NF2. Key words: Neurofibromatosis type 2
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Evolutionary game dynamics of controlled and automatic decision-making
NASA Astrophysics Data System (ADS)
Toupo, Danielle F. P.; Strogatz, Steven H.; Cohen, Jonathan D.; Rand, David G.
2015-07-01
We integrate dual-process theories of human cognition with evolutionary game theory to study the evolution of automatic and controlled decision-making processes. We introduce a model in which agents who make decisions using either automatic or controlled processing compete with each other for survival. Agents using automatic processing act quickly and so are more likely to acquire resources, but agents using controlled processing are better planners and so make more effective use of the resources they have. Using the replicator equation, we characterize the conditions under which automatic or controlled agents dominate, when coexistence is possible and when bistability occurs. We then extend the replicator equation to consider feedback between the state of the population and the environment. Under conditions in which having a greater proportion of controlled agents either enriches the environment or enhances the competitive advantage of automatic agents, we find that limit cycles can occur, leading to persistent oscillations in the population dynamics. Critically, however, these limit cycles only emerge when feedback occurs on a sufficiently long time scale. Our results shed light on the connection between evolution and human cognition and suggest necessary conditions for the rise and fall of rationality.
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Computational Simulation of Acoustic Modes in Rocket Combustors
NASA Technical Reports Server (NTRS)
Harper, Brent (Technical Monitor); Merkle, C. L.; Sankaran, V.; Ellis, M.
2004-01-01
A combination of computational fluid dynamic analysis and analytical solutions is being used to characterize the dominant modes in liquid rocket engines in conjunction with laboratory experiments. The analytical solutions are based on simplified geometries and flow conditions and are used for careful validation of the numerical formulation. The validated computational model is then extended to realistic geometries and flow conditions to test the effects of various parameters on chamber modes, to guide and interpret companion laboratory experiments in simplified combustors, and to scale the measurements to engine operating conditions. In turn, the experiments are used to validate and improve the model. The present paper gives an overview of the numerical and analytical techniques along with comparisons illustrating the accuracy of the computations as a function of grid resolution. A representative parametric study of the effect of combustor mean flow Mach number and combustor aspect ratio on the chamber modes is then presented for both transverse and longitudinal modes. The results show that higher mean flow Mach numbers drive the modes to lower frequencies. Estimates of transverse wave mechanics in a high aspect ratio combustor are then contrasted with longitudinal modes in a long and narrow combustor to provide understanding of potential experimental simulations.
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NASA Astrophysics Data System (ADS)
Telesman, J.; Smith, T. M.; Gabb, T. P.; Ring, A. J.
2018-06-01
Cyclic near-threshold fatigue crack growth (FCG) behavior of two disk superalloys was evaluated and was shown to exhibit an unexpected sudden failure mode transition from a mostly transgranular failure mode at higher stress intensity factor ranges to an almost completely intergranular failure mode in the threshold regime. The change in failure modes was associated with a crossover of FCG resistance curves in which the conditions that produced higher FCG rates in the Paris regime resulted in lower FCG rates and increased ΔK th values in the threshold region. High-resolution scanning and transmission electron microscopy were used to carefully characterize the crack tips at these near-threshold conditions. Formation of stable Al-oxide followed by Cr-oxide and Ti-oxides was found to occur at the crack tip prior to formation of unstable oxides. To contrast with the threshold failure mode regime, a quantitative assessment of the role that the intergranular failure mode has on cyclic FCG behavior in the Paris regime was also performed. It was demonstrated that even a very limited intergranular failure content dominates the FCG response under mixed mode failure conditions.
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Larsman, Pernilla; Kadefors, Roland; Sandsjö, Leif
2013-01-01
Unfavorable psychosocial working conditions are hypothesized to lead to perceived stress, which, in turn, can be related to an increased risk of development of neck/shoulder symptoms through increased and sustained muscle activation. The aim of the present study was to test this hypothesized process model among medical secretaries, a female-dominated profession characterized by a high amount of visual display unit use and a high prevalence of neck/shoulder symptoms. In this cross-sectional study, a questionnaire survey was conducted among medical secretaries (n = 200). The proposed process model was tested using a path model framework. The results indicate that high work demands were related to high perceived stress, which in turn was related to a high perceived muscle tension and neck/shoulder symptoms. Low influence at work was not related to perceived stress, but was directly related to a high perceived muscle tension. In general, these cross-sectional results lend tentative support for the hypothesis that adverse psychosocial work conditions (high work demands) may contribute to the development of neck/shoulder symptoms through the mechanism of stress-induced sustained muscular activation. This process model needs to be further tested in longitudinal studies.
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Evolutionary game dynamics of controlled and automatic decision-making.
Toupo, Danielle F P; Strogatz, Steven H; Cohen, Jonathan D; Rand, David G
2015-07-01
We integrate dual-process theories of human cognition with evolutionary game theory to study the evolution of automatic and controlled decision-making processes. We introduce a model in which agents who make decisions using either automatic or controlled processing compete with each other for survival. Agents using automatic processing act quickly and so are more likely to acquire resources, but agents using controlled processing are better planners and so make more effective use of the resources they have. Using the replicator equation, we characterize the conditions under which automatic or controlled agents dominate, when coexistence is possible and when bistability occurs. We then extend the replicator equation to consider feedback between the state of the population and the environment. Under conditions in which having a greater proportion of controlled agents either enriches the environment or enhances the competitive advantage of automatic agents, we find that limit cycles can occur, leading to persistent oscillations in the population dynamics. Critically, however, these limit cycles only emerge when feedback occurs on a sufficiently long time scale. Our results shed light on the connection between evolution and human cognition and suggest necessary conditions for the rise and fall of rationality.
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Overview of Mount Washington Icing Sensors Project
NASA Technical Reports Server (NTRS)
Ryerson, Charles C.; Politovich, Marcia K.; Rancourt, Kenneth L.; Koenig, George G.; Reinking, Roger F.; Miller, Dean R.
2003-01-01
NASA, the FAA, the Department of Defense, the National Center for Atmospheric Research and NOAA are developing techniques for retrieving cloud microphysical properties from a variety of remote sensing technologies. The intent is to predict aircraft icing conditions ahead of aircraft. The Mount Washington Icing Sensors Project MWISP), conducted in April, 1999 at Mt. Washington, NH, was organized to evaluate technologies for the prediction of icing conditions ahead of aircraft in a natural environment, and to characterize icing cloud and drizzle environments. April was selected for operations because the Summit is typically in cloud, generally has frequent freezing precipitation in spring, and the clouds have high liquid water contents. Remote sensing equipment, consisting of radars, radiometers and a lidar, was placed at the base of the mountain, and probes measuring cloud particles, and a radiometer, were operated from the Summit. NASA s Twin Otter research aircraft also conducted six missions over the site. Operations spanned the entire month of April, which was dominated by wrap-around moisture from a low pressure center stalled off the coast of Labrador providing persistent upslope clouds with relatively high liquid water contents and mixed phase conditions. Preliminary assessments indicate excellent results from the lidar, radar polarimetry, radiosondes and summit and aircraft measurements.
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NASA Technical Reports Server (NTRS)
Zak, J. A.
1989-01-01
A three-dimensional cloud model was used to characterize the dominant influence of the environment on the Space Shuttle exhaust cloud. The model was modified to accept the actual heat and moisture from rocket exhausts and deluge water as initial conditions. An upper-air sounding determined the ambient atmosphere in which the cloud would grow. The model was validated by comparing simulated clouds with observed clouds from four actual Shuttle launches. Results are discussed with operational weather forecasters in mind. The model successfully produced clouds with dimensions, rise, decay, liquid water contents, and vertical motion fields very similar to observed clouds whose dimensions were calculated from 16 mm film frames. Once validated, the model was used in a number of different atmospheric conditions ranging from very unstable to very stable. Wind shear strongly affected the appearance of both the ground cloud and vertical column cloud. The ambient low-level atmospheric moisture governed the amount of cloud water in model clouds. Some dry atmospheres produced little or no cloud water. An empirical forecast technique for Shuttle cloud rise is presented and differences between natural atmospheric convection and exhaust clouds are discussed.
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Biofouling of contaminated ground-water recovery wells: Characterization of microorganisms
DOE Office of Scientific and Technical Information (OSTI.GOV)
Taylor, S.W.; Lange, C.R.; Lesold, E.A.
1997-11-01
The taxonomy and physiology of microorganisms isolated from contaminated ground-water recovery wells prone to biofouling are characterized for an industrial site in Rochester, New York. Principal aquifer contaminants include acetone, cyclohexane, dichloroethane, dichloromethane, 1,4-dioxane, isopropanol, methanol, and toluene. These contaminants represent a significant fraction (up to 95%) of the total organic carbon in the ground water. Ground-water samples from 12 recovery wells were used to isolate, quantify, and identify aerobic and anaerobic bacterial populations. Samples from selected wells were also characterized geochemically to assess redox conditions and availability of essential and trace nutrients. Dominant bacteria, listed in order of descendingmore » numbers, including sulfate-reducers (Desulfovibrio desulfuricans), anaerobic heterotrophs (Actinomyces, Bacteriodes, Bacillus, Agrobacterium), aerobic heterotrophs (Pseudomonas, Flavobacterium, Nocardia, Citrobacter), iron-oxidizers (Gallionella ferruginea, Crenothrix polyspora), iron-reducers (Shewanella), and sulfur-oxidizers (Thiobacillus ferrooxidans). Fungi were also recovered in low numbers. Both aerobic and anaerobic heterotrophs were able to utilize all principal contaminants as sole carbon and energy sources except 1,4-dioxane. The prevalence of heterotrophic bacteria and their ability to use the available anthropogenic carbon suggests that aerobic and anaerobic heterotrophs contribute to the biofouling of wells at this site, in addition to the often cited fouling due to iron-oxidizing bacteria and sulfate-reducing bacteria.« less
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Characterization of xenon ion and neutral interactions in a well-characterized experiment
NASA Astrophysics Data System (ADS)
Patino, Marlene I.; Wirz, Richard E.
2018-06-01
Interactions between fast ions and slow neutral atoms are commonly dominated by charge-exchange and momentum-exchange collisions, which are important to understanding and simulating the performance and behavior of many plasma devices. To investigate these interactions, this work developed a simple, well-characterized experiment that accurately measures the behavior of high energy xenon ions incident on a background of xenon neutral atoms. By using well-defined operating conditions and a simple geometry, these results serve as canonical data for the development and validation of plasma models and models of neutral beam sources that need to ensure accurate treatment of angular scattering distributions of charge-exchange and momentum-exchange ions and neutrals. The energies used in this study are relevant for electric propulsion devices ˜1.5 keV and can be used to improve models of ion-neutral interactions in the plume. By comparing these results to both analytical and computational models of ion-neutral interactions, we discovered the importance of (1) accurately treating the differential cross-sections for momentum-exchange and charge-exchange collisions over a large range of neutral background pressures and (2) properly considering commonly overlooked interactions, such as ion-induced electron emission from nearby surfaces and neutral-neutral ionization collisions.
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Tonal noise of a controlled-diffusion airfoil at low angle of attack and Reynolds number.
Padois, Thomas; Laffay, Paul; Idier, Alexandre; Moreau, Stéphane
2016-07-01
The acoustic signature of a controlled-diffusion airfoil immersed in a flow is experimentally characterized. Acoustic measurements have been carried out in an anechoic open-jet-wind-tunnel for low Reynolds numbers (from 5 × 10(4) to 4.3 × 10(5)) and several angles of attack. As with the NACA0012, the acoustic spectrum is dominated by discrete tones. These tonal behaviors are divided into three different regimes. The first one is characterized by a dominant primary tone which is steady over time, surrounded by secondary peaks. The second consists of two unsteady primary tones associated with secondary peaks and the third consists of a hump dominated by several small peaks. A wavelet study allows one to identify an amplitude modulation of the acoustic signal mainly for the unsteady tonal regime. This amplitude modulation is equal to the frequency interval between two successive tones. Finally, a bispectral analysis explains the presence of tones at higher frequencies.
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Cenomanian-Turonian transition in a shallow water sequence of the Sinai, Egypt
NASA Astrophysics Data System (ADS)
Gertsch, B.; Keller, G.; Adatte, T.; Berner, Z.; Kassab, A. S.; Tantawy, A. A. A.; El-Sabbagh, A. M.; Stueben, D.
2010-01-01
Environmental and depositional changes across the Late Cenomanian oceanic anoxic event (OAE2) in the Sinai, Egypt, are examined based on biostratigraphy, mineralogy, δ13C values and phosphorus analyses. Comparison with the Pueblo, Colorado, stratotype section reveals the Whadi El Ghaib section as stratigraphically complete across the late Cenomanian-early Turonian. Foraminifera are dominated by high-stress planktic and benthic assemblages characterized by low diversity, low-oxygen and low-salinity tolerant species, which mark shallow-water oceanic dysoxic conditions during OAE2. Oyster biostromes suggest deposition occurred in less than 50 m depths in low-oxygen, brackish, and nutrient-rich waters. Their demise prior to the peak δ13C excursion is likely due to a rising sea-level. Characteristic OAE2 anoxic conditions reached this coastal region only at the end of the δ13C plateau in deeper waters near the end of the Cenomanian. Increased phosphorus accumulations before and after the δ13C excursion suggest higher oxic conditions and increased detrital input. Bulk-rock and clay mineralogy indicate humid climate conditions, increased continental runoff and a rising sea up to the first δ13C peak. Above this interval, a dryer and seasonally well-contrasted climate with intermittently dry conditions prevailed. These results reveal the globally synchronous δ13C shift, but delayed effects of OAE2 dependent on water depth.
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NASA Astrophysics Data System (ADS)
Khan, M. Yusuf; Johnson, Kent C.; Durbin, Thomas D.; Jung, Heejung; Cocker, David R.; Bishnu, Dipak; Giannelli, Robert
2012-08-01
This study provides an evaluation of the latest Particulate Matter-Portable Emissions Measurement Systems (PM-PEMS) under different environmental and in-use conditions. It characterizes four PM measurement systems based on different measurement principles. At least three different units were tested for each PM-PEMS to account for variability. These PM-PEMS were compared with a UC Riverside's mobile reference laboratory (MEL). PM measurements were made from a class 8 truck with a 2008 Cummins diesel engine with a diesel particulate filter (DPF). A bypass around the DPF was installed in the exhaust to achieve a brake specific PM (bsPM) emissions level of 25 mg hp-1h-1. PM was dominated by elemental carbon (EC) during non-regeneration conditions and by hydrated sulfate (H2SO4.6H2O) during regeneration. The photo-acoustic PM-PEMS performed best, with a linear regression slope of 0.90 and R2 of 0.88 during non-regenerative conditions. With the addition of a filter, the photo-acoustic PM-PEMS slightly over reported than the total PM mass (slope = 1.10, R2 = 0.87). Under these same non-regeneration conditions, a PM-PEMS equipped with a quartz crystal microbalance (QCM) technology performed the poorest, and had a slope of 0.22 and R2 of 0.13. Re-tests performed on upgraded QCM PM-PEMS showed a better slope (0.66), and a higher R2 of 0.25. In the case of DPF regeneration, all PM-PEMS performed poorly, with the best having a slope of 0.20 and R2 of 0.78. Particle size distributions (PSD) showed nucleation during regeneration, with a shift of particle size to smaller diameters (˜64 nm to ˜13 nm) with elevated number concentrations when compared to non-regeneration conditions.
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So, Nina; Franks, Becca; Lim, Sean; Curley, James P
2015-01-01
Modelling complex social behavior in the laboratory is challenging and requires analyses of dyadic interactions occurring over time in a physically and socially complex environment. In the current study, we approached the analyses of complex social interactions in group-housed male CD1 mice living in a large vivarium. Intensive observations of social interactions during a 3-week period indicated that male mice form a highly linear and steep dominance hierarchy that is maintained by fighting and chasing behaviors. Individual animals were classified as dominant, sub-dominant or subordinate according to their David's Scores and I& SI ranking. Using a novel dynamic temporal Glicko rating method, we ascertained that the dominance hierarchy was stable across time. Using social network analyses, we characterized the behavior of individuals within 66 unique relationships in the social group. We identified two individual network metrics, Kleinberg's Hub Centrality and Bonacich's Power Centrality, as accurate predictors of individual dominance and power. Comparing across behaviors, we establish that agonistic, grooming and sniffing social networks possess their own distinctive characteristics in terms of density, average path length, reciprocity out-degree centralization and out-closeness centralization. Though grooming ties between individuals were largely independent of other social networks, sniffing relationships were highly predictive of the directionality of agonistic relationships. Individual variation in dominance status was associated with brain gene expression, with more dominant individuals having higher levels of corticotropin releasing factor mRNA in the medial and central nuclei of the amygdala and the medial preoptic area of the hypothalamus, as well as higher levels of hippocampal glucocorticoid receptor and brain-derived neurotrophic factor mRNA. This study demonstrates the potential and significance of combining complex social housing and intensive behavioral characterization of group-living animals with the utilization of novel statistical methods to further our understanding of the neurobiological basis of social behavior at the individual, relationship and group levels.
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So, Nina; Franks, Becca; Lim, Sean; Curley, James P.
2015-01-01
Modelling complex social behavior in the laboratory is challenging and requires analyses of dyadic interactions occurring over time in a physically and socially complex environment. In the current study, we approached the analyses of complex social interactions in group-housed male CD1 mice living in a large vivarium. Intensive observations of social interactions during a 3-week period indicated that male mice form a highly linear and steep dominance hierarchy that is maintained by fighting and chasing behaviors. Individual animals were classified as dominant, sub-dominant or subordinate according to their David’s Scores and I& SI ranking. Using a novel dynamic temporal Glicko rating method, we ascertained that the dominance hierarchy was stable across time. Using social network analyses, we characterized the behavior of individuals within 66 unique relationships in the social group. We identified two individual network metrics, Kleinberg’s Hub Centrality and Bonacich’s Power Centrality, as accurate predictors of individual dominance and power. Comparing across behaviors, we establish that agonistic, grooming and sniffing social networks possess their own distinctive characteristics in terms of density, average path length, reciprocity out-degree centralization and out-closeness centralization. Though grooming ties between individuals were largely independent of other social networks, sniffing relationships were highly predictive of the directionality of agonistic relationships. Individual variation in dominance status was associated with brain gene expression, with more dominant individuals having higher levels of corticotropin releasing factor mRNA in the medial and central nuclei of the amygdala and the medial preoptic area of the hypothalamus, as well as higher levels of hippocampal glucocorticoid receptor and brain-derived neurotrophic factor mRNA. This study demonstrates the potential and significance of combining complex social housing and intensive behavioral characterization of group-living animals with the utilization of novel statistical methods to further our understanding of the neurobiological basis of social behavior at the individual, relationship and group levels. PMID:26226265
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NASA Astrophysics Data System (ADS)
Cosmin Diaconu, Andrei; Feurdean, Angelica; Lamentowicz, Mariusz; Gałka, Mariusz; Tanţǎu, Ioan
2016-04-01
Knowledge of past local vs. regional hydro-climate variability is a priority in climate research. This is because ecosystems and human depend on local climatic conditions and the magnitude of these climate changes is more variable at local and regional rather than at global scales. Ombrotrophic bogs are highly suitable for hydro-climate reconstructions as they are entirely dependent on the water from precipitation. We used stratigraphy, radiocarbon dating, testate amoebae (TA) and plant macrofossils on a peat profile from an ombrotrophic bog (Tǎul Muced) located in the Biosphere Reserve of the Rodna National Park Romania. We performed quantitative reconstruction of the depth to water table (DWT) and pH over the last 8000 years in a continental area of CE Europe. We identified six main stages in the development of the bog based on changes in TA assemblages in time. Wet conditions and pH between 2 and 4.5 were recorded between 4600-2750 and 1300-400 cal. yr BP, by the occurrence of Archerella flavum, Amphitrema wrightianum and Hyalosphenia papilio. This was associated to a local vegetation primarily composed of Sphagnum magellanicum and S. angustifolium. Dry stages and pH of 2.5 to 5 were inferred between 7550-4600, 2750-1300 and -50 cal. yr BP, by the dominance of Nebela militaris, Difflugia pulex and Phryganella acropodia. These overall dry conditions were also connected with increased abundance of Eriophorum vaginatum. The period between 400 and -50 cal. yr BP was characterized by a rapid shift from dry to wet conditions on the surface of the bog. Vegetation shifted from Sphagnum magellanicum to Sphagnum russowii dominated community. Our reconstruction remains in relatively good agreement with other palaeohydrological records from Central Eastern Europe. However, it shows contrasting conditions to others particularly with records from NW Europe. The valuable information regarding bog hydrology offered by our record puts an accent on the need of more regional TA based reconstruction studies, to get a compressive picture of larger spatial scales of hydro-climate variability in Europe.
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Allen, M. Brady; Burkhardt, Jeanette; Munz, Carrie; Connolly, Patrick J.
2012-01-01
We assessed the physical and biotic conditions in the part of Buck Creek, Washington, potentially accessible to anadromous fishes. This creek is a major tributary to the White Salmon River upstream of Condit Dam, which was breached in October 2011. Habitat and fish populations were characterized in four stream reaches. Reach breaks were based on stream gradient, water withdrawals, and fish barriers. Buck Creek generally was confined, with a single straight channel and low sinuosity. Boulders and cobble were the dominant stream substrate, with limited gravel available for spawning. Large-cobble riffles were 83 percent of the available fish habitat. Pools, comprising 15 percent of the surface area, mostly were formed by bedrock with little instream cover and low complexity. Instream wood averaged 6—10 pieces per 100 meters, 80 percent of which was less than 50 centimeters in diameter. Water temperature in Buck Creek rarely exceeded 16 degrees Celsius and did so for only 1 day at river kilometer (rkm) 3 and 11 days at rkm 0.2 in late July and early August 2009. The maximum temperature recorded was 17.2 degrees Celsius at rkm 0.2 on August 2, 2009. Minimum summer discharge in Buck Creek was 3.3 cubic feet per second downstream of an irrigation diversion (rkm 3.1) and 7.7 cubic feet per second at its confluence with the White Salmon River. Rainbow trout (Oncorhynchus mykiss) was the dominant fish species in all reaches. The abundance of age-1 or older rainbow trout was similar between reaches. However, in 2009 and 2010, the greatest abundance of age-0 rainbow trout (8 fish per meter) was in the most downstream reach. These analyses in Buck Creek are important for understanding the factors that may limit fish abundance and productivity, and they will help identify and prioritize potential restoration actions. The data collected constitute baseline information of pre-dam removal conditions that will allow assessment of changes in fish populations now that Condit Dam has been removed and anadromous fish have an opportunity to recolonize Buck Creek.
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Late Holocene environmental changes in a mesotidal estuary from Patagonia, Argentina
NASA Astrophysics Data System (ADS)
Espinosa, Marcela; Escandell, Alejandra; Velez Agudelo, Camilo
2016-04-01
Two sediment records from the lower valley of Negro River, Patagonia, Argentina (41°01´S; 62°47'W) spanning for the last 2000 cal yrs BP were analyzed according to diatoms and sediments contents. The river originates at the junction of the Neuquén and the Limay Rivers, Northern Patagonia, and discharges more than 1000 m3/s to the South Atlantic Ocean. Mesotidal conditions dominate at the inlet (2.95 m) affecting the lower valley (about 20 km) where salinity decreases drastically in the last 2 km. Fossil diatom assemblages and grain size were studied from two cores located at 1.5 km (Villarino site) and 12 km (Criadero site) from the inlet. Samples for modern diatom analyses were collected from the littoral zone at eleven sites along the river. Physical and chemical variables were quantified representing the maximum heterogeneity along the aquatic environment. Turbidity, salinity, conductivity, pH and temperature data were obtained in situ during summer and winter. In addition, a surface sediment sample was taken for grain size analysis and organic matter content, and water samples were taken to analyze nutrients and major ions following standard methods. The diatom content of modern sediment samples were studied in order to achieve ecological information useful as modern analogous for Patagonian rivers. Diatom zones were characterized by constrained incremental sum of squares cluster analysis (single linkage, Euclidean distance) in the fossil sequences. Fossil and modern diatom assemblages were compared with Detrended Correspondence Analysis (DCA). A total of 77 samples (modern and fossils) were analyzed and more than 200 taxa were identified. Diatom assemblages showed distinct abundance patterns in relation to salinity with a shift from communities dominated by marine/brackish taxa in lower sites to communities dominated by freshwater taxa in the middle and upper course of the river. The record of Criadero core (12 km from the inlet) began 2000 cal yrs BP with a shallow vegetated brackish/freshwater environment represented by Surirella brebissonii, Epithemia adnata and Rhopalodia gibba. The environment evolved gradually into marine conditions with dominance of Paralia sulcata, Delphineis surirella, Raphoneis amphiceros and Cymatosira belgica (tidal channel). Finally, marine brackish aerophilous taxa indicate the development of a saltmarsh. Villarino core (1.5 km from the inlet) represents the infilling of the estuary during the last 1300 cal yrs BP with the dominance of the marine/brackish tychoplankton taxa Paralia sulcata. The fossil assemblages of the two studied sequences showed similarity with modern assemblages of the lower valley of the river. Considering the strong influence of salinity changes on diatom assemblages, tidal effects are the main controlling factor for the composition and distribution of diatoms along mesotidal estuaries from Patagonia. The knowledge of palaeoenvironmental conditions derived from fossil diatom assemblages is very important to infer man-made changes in coastal areas and can be used as reference for the assessment of recent coastal changes (dredging, harbour construction, flood control improvements, pollution).
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The Genetic Counseling Video Project (GCVP): Models of Practice
Roter, D.; Ellington, L.; Erby, L. Hamby; Larson, S.; W, Dudley
2009-01-01
Genetic counseling is conceptualized as having both “teaching” and “counseling” functions; however, little is known about how these functions are articulated in routine practice. This study addresses the question by documenting, on videotape, the practices of a national sample of prenatal and cancer genetic counselors (GCs) providing routine pretest counseling to simulated clients (SCs). 177 GCs recruited at two annual conferences of the National Society of Genetic Counselors (NSGC) were randomly assigned to counsel one of six female SCs of varying ethnicity, with or without a spouse, in their specialty. 152 videotapes were coded with the Roter Interaction Analysis System (RIAS) and both GCs and SCs completed evaluative questionnaires. Two teaching and two counseling patterns of practice emerged from cluster analysis. The teaching patterns included: (1) Clinical teaching (31%) characterized by low psychosocial, emotional and facilitative talk, high levels of clinical exchange, and high verbal dominance; and (2) Psycho-educational teaching (27%) characterized by high levels of both clinical and psychosocial exchange, low levels of emotional and facilitative talk, and higher verbal dominance. The counseling patterns included: (1) Supportive counseling (33%) characterized by low psychosocial and clinical exchange, high levels of emotional and facilitative talk, and low verbal dominance; and (2) Psychosocial counseling (9%) with high emotional and facilitative talk, low clinical and high psychosocial exchange, and the lowest verbal dominance. SCs ratings of satisfaction with communication, the counselor’s affective demeanor, and the counselor’s use of nonverbal skills were highest for the counseling model sessions. Both the teaching and counseling models seem to be represented in routine practice and predict variation in client satisfaction. PMID:16941666
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Convection- and SASI-driven flows in parametrized models of core-collapse supernova explosions
Endeve, E.; Cardall, C. Y.; Budiardja, R. D.; ...
2016-01-21
We present initial results from three-dimensional simulations of parametrized core-collapse supernova (CCSN) explosions obtained with our astrophysical simulation code General Astrophysical Simulation System (GenASIS). We are interested in nonlinear flows resulting from neutrino-driven convection and the standing accretion shock instability (SASI) in the CCSN environment prior to and during the explosion. By varying parameters in our model that control neutrino heating and shock dissociation, our simulations result in convection-dominated and SASI-dominated evolution. We describe this initial set of simulation results in some detail. To characterize the turbulent flows in the simulations, we compute and compare velocity power spectra from convection-dominatedmore » and SASI-dominated (both non-exploding and exploding) models. When compared to SASI-dominated models, convection-dominated models exhibit significantly more power on small spatial scales.« less
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Caro-Martín, C Rocío; Leal-Campanario, Rocío; Sánchez-Campusano, Raudel; Delgado-García, José M; Gruart, Agnès
2015-11-04
We were interested in determining whether rostral medial prefrontal cortex (rmPFC) neurons participate in the measurement of conditioned stimulus-unconditioned stimulus (CS-US) time intervals during classical eyeblink conditioning. Rabbits were conditioned with a delay paradigm consisting of a tone as CS. The CS started 50, 250, 500, 1000, or 2000 ms before and coterminated with an air puff (100 ms) directed at the cornea as the US. Eyelid movements were recorded with the magnetic search coil technique and the EMG activity of the orbicularis oculi muscle. Firing activities of rmPFC neurons were recorded across conditioning sessions. Reflex and conditioned eyelid responses presented a dominant oscillatory frequency of ≈12 Hz. The firing rate of each recorded neuron presented a single peak of activity with a frequency dependent on the CS-US interval (i.e., ≈12 Hz for 250 ms, ≈6 Hz for 500 ms, and≈3 Hz for 1000 ms). Interestingly, rmPFC neurons presented their dominant firing peaks at three precise times evenly distributed with respect to CS start and also depending on the duration of the CS-US interval (only for intervals of 250, 500, and 1000 ms). No significant neural responses were recorded at very short (50 ms) or long (2000 ms) CS-US intervals. rmPFC neurons seem not to encode the oscillatory properties characterizing conditioned eyelid responses in rabbits, but are probably involved in the determination of CS-US intervals of an intermediate range (250-1000 ms). We propose that a variable oscillator underlies the generation of working memories in rabbits. The way in which brains generate working memories (those used for the transient processing and storage of newly acquired information) is still an intriguing question. Here, we report that the firing activities of neurons located in the rostromedial prefrontal cortex recorded in alert behaving rabbits are controlled by a dynamic oscillator. This oscillator generated firing frequencies in a variable band of 3-12 Hz depending on the conditioned stimulus-unconditioned stimulus intervals (1 s, 500 ms, 250 ms) selected for classical eyeblink conditioning of behaving rabbits. Shorter (50 ms) and longer (2 s) intervals failed to activate the oscillator and prevented the acquisition of conditioned eyelid responses. This is an unexpected mechanism to generate sustained firing activities in neural circuits generating working memories. Copyright © 2015 the authors 0270-6474/15/3514809-13$15.00/0.
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Winter feeding, growth and condition of brown trout Salmo trutta in a groundwater-dominated stream
French, William E.; Vondracek, Bruce C.; Ferrington, Leonard C.; Finlay, Jacques C.; Dieterman, Douglas J.
2014-01-01
Winter can be a stressful period for stream-dwelling salmonid populations, often resulting in reduced growth and survival. Stream water temperatures have been identified as a primary mechanism driving reductions in fitness during winter. However, groundwater inputs can moderate water temperature and may reduce winter severity. Additionally, seasonal reductions in prey availability may contribute to decreased growth and survival, although few studies have examined food webs supporting salmonids under winter conditions. This study employed diet, stable isotope, and mark-recapture techniques to examine winter (November through March) feeding, growth, and condition of brown troutSalmo trutta in a groundwater-dominated stream (Badger Creek, Minnesota, USA). Growth was greater for fish ≤ 150 mm (mean = 4.1 mg g−1 day−1) than for those 151–276 mm (mean = 1.0 mg g−1 day−1) during the winter season. Overall condition from early winter to late winter did not vary for fish ≤150 mm (mean relative weight (Wr) = 89.5) and increased for those 151–276 mm (mean Wr = 85.8 early and 89.4 late). Although composition varied both temporally and by individual, brown trout diets were dominated by aquatic invertebrates, primarily Amphipods, Dipterans, and Trichopterans. Stable isotope analysis supported the observations of the dominant prey taxa in stomach contents and indicated the winter food web was supported by a combination of allochthonous inputs and aquatic macrophytes. Brown trout in Badger Creek likely benefited from the thermal regime and increased prey abundance present in this groundwater-dominated stream during winter.
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Lubricating oil dominates primary organic aerosol emissions from motor vehicles.
Worton, David R; Isaacman, Gabriel; Gentner, Drew R; Dallmann, Timothy R; Chan, Arthur W H; Ruehl, Christopher; Kirchstetter, Thomas W; Wilson, Kevin R; Harley, Robert A; Goldstein, Allen H
2014-04-01
Motor vehicles are major sources of primary organic aerosol (POA), which is a mixture of a large number of organic compounds that have not been comprehensively characterized. In this work, we apply a recently developed gas chromatography mass spectrometry approach utilizing "soft" vacuum ultraviolet photoionization to achieve unprecedented chemical characterization of motor vehicle POA emissions in a roadway tunnel with a mass closure of >60%. The observed POA was characterized by number of carbon atoms (NC), number of double bond equivalents (NDBE) and degree of molecular branching. Vehicular POA was observed to predominantly contain cycloalkanes with one or more rings and one or more branched alkyl side chains (≥80%) with low abundances of n-alkanes and aromatics (<5%), similar to "fresh" lubricating oil. The gas chromatography retention time data indicates that the cycloalkane ring structures are most likely dominated by cyclohexane and cyclopentane rings and not larger cycloalkanes. High molecular weight combustion byproducts, that is, alkenes, oxygenates, and aromatics, were not present in significant amounts. The observed carbon number and chemical composition of motor vehicle POA was consistent with lubricating oil being the dominant source from both gasoline and diesel-powered vehicles, with an additional smaller contribution from unburned diesel fuel and a negligible contribution from unburned gasoline.
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An overview of physical and ecological processes in the Rio de la Plata Estuary
NASA Astrophysics Data System (ADS)
Marcelo Acha, E.; Mianzan, Hermes; Guerrero, Raúl; Carreto, José; Giberto, Diego; Montoya, Norma; Carignan, Mario
2008-07-01
The Rio de la Plata is a large-scale estuary located at 35°S on the Atlantic coast of South America. This system is one of the most important estuarine environments in the continent, being a highly productive area that sustains valuable artisanal and coastal fisheries in Uruguay and Argentina. The main goals of this paper are to summarize recent knowledge on this estuary, integrating physical, chemical and biological studies, and to explore the sources and ecological meaning of estuarine variability associated to the stratification/mixing alternateness in the estuary. We summarized unpublished data and information from several bibliographic sources. From study cases representing different stratification conditions, we draw a holistic view of physical patterns and ecological processes of the stratification/mixing alternateness. This estuary is characterized by strong vertical salinity stratification most of the time (the salt-wedge condition). The head of the estuary is characterized by a well-developed turbidity front. High turbidity constrains their photosynthesis. Immediately offshore the turbidity front, water becomes less turbid and phytoplankton peaks. As a consequence, trophic web in the estuary could be based on two sources of organic matter: phytoplankton and plant detritus. Dense plankton aggregations occur below the halocline and at the tip of the salt wedge. The mysid Neomysis americana, a key prey for juvenile fishes, occurs all along the turbidity front. A similar spatial pattern is shown by one of the most abundant benthic species, the clam Mactra isabelleana. These species could be taken advantage of the particulate organic matter and/or phytoplankton concentrated near the front. Nekton is represented by a rich fish community, with several fishes breeding inside the estuary. The most important species in terms of biomass is Micropogonias furnieri, the main target for the coastal fisheries of Argentina and Uruguay. Two processes have been identified as producing partially stratified conditions: persistent moderate winds (synoptic scale), or low freshwater runoff (interannual scale). Less frequently, total mixing of the salt wedge occurs after several hours of strong winds. The co-dominance of diatoms (which proliferate in highly turbulent environments) and red tides dinoflagellates and other bloom taxa (better adapted to stratified conditions), would indicate great variability in the turbulence strength, probably manifested as pulses. Microplankton and ichthyoplankton assemblages defined for the stratified condition are still recognized during the partially mixed condition, but in this case they occupy the entire water column: vertical structure of the plankton featuring the stratified condition become lost. Bottom fish assemblages, on the contrary, shows persistence under the different stratification conditions, though the dominant species of the groups show some variations. Summarizing, the Río de la Plata Estuary is a highly variable environment, strongly stratified most of the time but that can be mixed in some few hours by strong wind events that occur in an unpredictable manner, generating stratification/partially mixed (less frequently totally mixed) pulses all along the year. At larger temporal scales, the system is under the effects of river discharge variations associated to the ENSO cycle, but their ecological consequences are not fully studied.
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Hydrological control over stream nitrate loss in an aggrading New Hampshire forest
NASA Astrophysics Data System (ADS)
Daley, R.; Goodale, C. L.; Buso, D.; Driscoll, C. T.; Fuss, C.; Likens, G. E.
2008-12-01
Stream chemistry of a small watershed in the Hubbard Brook Experimental Forest (Watershed 4) displays higher nitrate export than expected for an early successional forest in this region. Within Watershed 4, a small tributary (300 m in length) has a chemical signature far different from the main channel (1000 m in length). Previous monitoring has shown that the pH of the side tributary was significantly higher than that of the main channel and contains detectable levels of nitrate whereas the main channel had no detectable nitrate, and it is suspected that this side tributary significantly contributes to watershed export under base flow conditions. We expected that watershed's dominant water and chemical sources would vary with flow conditions, especially during summer thunderstorms. We hypothesized that the side tributary is the dominant source area under the normal base flow conditions of the summer (usually under 1 L/s) and that the main stem exerts dominance under the high flow conditions brought on by events. Daily water samples were taken throughout summer 2008 with three ISCO automated samplers: One ISCO was placed at the main stem of the stream, a second at the small internal tributary, and a third was placed at the weir. The samples were analyzed for pH, specific conductivity, and ANC, DOC, DON, and major anions and cations. The chemical data was compared to precipitation and rate of watershed flow calculated at each sampling hour to detect associations between chemical dominance and hydrological conditions. Under the base flow conditions of the summer, the chemistry of watershed outflow was dominated by that of the short side tributary, with lower acidity and higher nitrate levels than the longer main channel, but with notable contributions from the main channel. During each of the three high flow events that occurred over the summer, flow in the main channel increased dramatically and flow at the weir corresponded to temporarily increased acidity and decreased ANC. Preliminary nitrate data shows that a dilution response was associated with these events since there were significant declines in the nitrate levels of both the side tributary and watershed export during high flow conditions.
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NASA Astrophysics Data System (ADS)
Mnich, M.; Condit, C.
2016-12-01
The Springerville Volcanic Field (SVF), located in east-central Arizona, is one of the best-characterized basaltic monogenetic volcanic fields in the world, with it's expanse of over 3000 km2 now mapped in it's entirety as a result of recent efforts in 2010 and 2011. The methods used, called "magmatic mapping" (Condit, 2007), provide a standardized, volcanic unit focused approach to characterizing volcanic fields. This approach focuses on delineating contacts between flows, completely characterizing each flow, and placing them into a temporal framework. Results of magmatic mapping in the SVF now provide a comprehensive overview of the lifespan of the field, representing a unique resource, useful not only in studying the petrogenetic evolution of this field, but in serving as a template for comparing similar volcanic fields. On Earth, several fields pose a significant risk to population centers, though these hazards are often poorly understood due to long intervals between eruptions. On other planets, remote mapping can be greatly enhanced by comparing it with a well-studied terrestrial analog that has been analyzed in detail; an area with ever heightening necessity as high-resolution data is becoming increasingly available. In the SVF, olivine phyric lavas are most abundance (22% of volcanic outcrop), followed by diktytaxitic and olivine/plagioclase phyric flows. However, lithology will vary depending on when an eruption takes place in a volcanic fields lifecycle. On the whole, the SVF is younger to the east and younger lavas are dominantly more alkalic. These trends are also displayed within individual geographic divisions, many of which correspond to temporal-geographic clusters as defined by Condit and Connor (1996). The mapping methods and patterns in geochemistry, lithology and age progression within the SVF represent a unique template for which to base basaltic mapping.
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Blake, Stephen; Guézou, Anne; Deem, Sharon L.; Yackulic, Charles B.; Cabrera, Fredy
2015-01-01
The distribution of resources and food selection are fundamental to the ecology, life history, physiology, population dynamics, and conservation of animals. Introduced plants are changing foraging dynamics of herbivores in many ecosystems often with unknown consequences. Galapagos tortoises, like many herbivores, undertake migrations along elevation gradients driven by variability in vegetation productivity which take them into upland areas dominated by introduced plants. We sought to characterize diet composition of two species of Galapagos tortoises, focussing on how the role of introduced forage species changes over space and the implications for tortoise conservation. We quantified the distribution of tortoises with elevation using GPS telemetry. Along the elevation gradient, we quantified the abundance of introduced and native plant species, estimated diet composition by recording foods consumed by tortoises, and assessed tortoise physical condition from body weights and blood parameter values. Tortoises ranged between 0 and 429 m in elevation over which they consumed at least 64 plant species from 26 families, 44 percent of which were introduced species. Cover of introduced species and the proportion of introduced species in tortoise diets increased with elevation. Introduced species were positively selected for by tortoises at all elevations. Tortoise physical condition was either consistent or increased with elevation at the least biologically productive season on Galapagos. Santa Cruz tortoises are generalist herbivores that have adapted their feeding behavior to consume many introduced plant species that has likely made a positive contribution to tortoise nutrition. Some transformed habitats that contain an abundance of introduced forage species are compatible with tortoise conservation.
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Changes of the transitional climate zone in East Asia: past and future
NASA Astrophysics Data System (ADS)
Wang, Lin; Chen, Wen; Huang, Gang; Zeng, Gang
2017-08-01
The transitional climate zone (TCZ) between humid and arid regions in East Asia is characterized by sharp climate and biome gradients, interaction between the East Asian summer monsoon and the mid-latitude westerly winds and mixed agriculture-pasture activities. Consequently, it is highly vulnerable to natural disturbances and particularly human-driven global change. This study aims to illuminate the spatial and temporal variation of TCZ across both the retrospective and the prospective periods. In the historical period, both the front and rear edges of TCZ exhibit wide year-to-year excursions and have experienced coastward migration with increasing aridity throughout TCZ. Furthermore, precipitation fluctuation mainly contributes to interannual variability of TCZ whereas potential evaporation behavior dominates the long-term trends of TCZ. Models are capable of largely reproducing the shape and orientation of TCZ, although northwestward bias is apparent. In global warming scenario period, there will be continuing southeastward displacement for the front edge but the opposite northwestward movement is projected for the rear one, as a consequence of significant drying trends in the humid zone together with regime shifts towards humid conditions in the arid zone. Despite expanded TCZ sector, however, the available water resources inside it suffer little magnitude changes without preferential tendency towards either drier or wetter conditions, implying neither deleterious nor beneficial effects on the TCZ environment. Moreover, interannual variability of TCZ is expected to become stronger, resulting in more frequent occurrences of extreme swings. Finally, it is noted that uncertainty arising from climate models dominates in the TCZ than dispersed emission scenarios, in contrast to the situation in humid and arid zones.
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Distribution of Diatoms in Relation to Land Use and pH in Blackwater Coastal Plain Streams
NASA Astrophysics Data System (ADS)
Zampella, Robert A.; Laidig, Kim J.; Lowe, Rex L.
2007-03-01
We compared the composition of diatom assemblages collected from New Jersey Pinelands blackwater streams draining four different land uses, including forest land, abandoned-cranberry bogs, active-cranberry bogs, and developed and upland-agricultural land. Over a 2-year period (2002-2003), we collected 132 diatom taxa at 14 stream sites. Between-year variability in the composition of stream samples was high. Most diatom species were rarely encountered and were found in low abundance. Specific conductance and pH were higher at developed/agricultural sites compared with all other site types. Neither species richness nor genus richness was significantly different between stream types. However, clear community patterns were evident, and a significant difference in species composition existed between the developed/agricultural sites and both cranberry and forest sites. The primary community gradient, represented by the first axis of a DCA ordination, was associated with variations in pH and specific conductance. Although community patterns revealed by ordinating the data collected in 2002 differed from those obtained using the 2003 data, both ordinations contrasted the developed/agricultural sites and the other sites. Acidobiontic and acidophilous diatoms characterized the dominant species at forest, abandoned-bog, and cranberry sites, whereas indifferent species dominated the developed/agricultural samples. Although our study demonstrated a relationship between the composition of diatom assemblages and watershed conditions, several factors, including taxonomic problems, the large number of diatom species, incomplete pH classifications, and year-to-year variability may limit the utility of diatom species as indicators of watershed conditions in the New Jersey Pinelands.
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Nocturia in men is a chaotic condition dominated by nocturnal polyuria.
Fujimura, Tetsuya; Yamada, Yuta; Sugihara, Toru; Azuma, Takeshi; Suzuki, Motofumi; Fukuhara, Hiroshi; Nakagawa, Tohru; Kume, Haruki; Igawa, Yasuhiko; Homma, Yukio
2015-05-01
To characterize nocturia in men based on frequency volume chart data and symptom profiles assessed using the Core Lower Urinary Tract Symptom Score and Athens Insomnia Scale questionnaires. The Core Lower Urinary Tract Symptom Score and Athens Insomnia Scale questionnaires were administered to 299 consecutive treatment naïve men with nocturia (≥one time per night). Frequency volume chart data were recorded for 2 days. Correlations between nocturia and clinical characteristics including symptom scores, clinical diagnosis, Charlson Comorbidity Index, estimated glomerular filtration rate, uroflowmetry and prostate volume were analyzed. Patients were divided into five groups: one time (n = 36), two times (n = 65), three times (n = 85), four times (n = 78) and five times (n = 34) of nocturia. Age, prevalence or severity of chronic kidney disease, hyperlipidemia, low bladder capacity, nocturnal polyuria, urgency, bladder pain and sleep disorders were significantly correlated with the severity of nocturia. The Spearman correlation analysis identified eight possible independent factors for nocturia: age, estimated glomerular filtration rate, urgency, bladder pain, sleep quality, sleepiness during the day, average voided volume and nocturnal volume divided by body weight. Logistic regression analysis showed that nocturnal volume divided by body weight was the strongest factor of nocturia, and ≥7, 9 and 9.7 mL/kg were practical cut-off values of three, four and five times per night of nocturia, respectively. Nocturia in men is a chaotic condition dominated by nocturnal polyuria, and related to multiple factors including age, renal function, urgency, bladder pain, insomnia and bladder volume. © 2015 The Japanese Urological Association.
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Monte Carlo simulations of relativistic radiation-mediated shocks - I. Photon-rich regime
NASA Astrophysics Data System (ADS)
Ito, Hirotaka; Levinson, Amir; Stern, Boris E.; Nagataki, Shigehiro
2018-02-01
We explore the physics of relativistic radiation-mediated shocks (RRMSs) in the regime where photon advection dominates over photon generation. For this purpose, a novel iterative method for deriving a self-consistent steady-state structure of RRMS is developed, based on a Monte Carlo code that solves the transfer of photons subject to Compton scattering and pair production/annihilation. Systematic study is performed by imposing various upstream conditions which are characterized by the following three parameters: the photon-to-baryon inertia ratio ξu*, the photon-to-baryon number ratio \\tilde{n}, and the shock Lorentz factor γu. We find that the properties of RRMSs vary considerably with these parameters. In particular, while a smooth decline in the velocity, accompanied by a gradual temperature increase is seen for ξu* ≫ 1, an efficient bulk Comptonization, that leads to a heating precursor, is found for ξu* ≲ 1. As a consequence, although particle acceleration is highly inefficient in these shocks, a broad non-thermal spectrum is produced in the latter case. The generation of high-energy photons through bulk Comptonization leads, in certain cases, to a copious production of pairs that provide the dominant opacity for Compton scattering. We also find that for certain upstream conditions a weak subshock appears within the flow. For a choice of parameters suitable to gamma-ray bursts, the radiation spectrum within the shock is found to be compatible with that of the prompt emission, suggesting that subphotospheric shocks may give rise to the observed non-thermal features despite the absence of accelerated particles.
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Litterfall production of mangroves in the Huizache-Caimanero lagoon system, México
Flores-Cárdenas, Francisco; Hurtado-Oliva, Miguel Ángel; Doyle, Thomas W.; Nieves-Sotol, Mario; Díaz-Castro, Sara; Manzano-Sarabia, Marlenne
2017-01-01
The ecological legacy of the Huizache-Caimanero lagoon system has long been known as a trophically rich and productive ecosystem that supported artisanal fisheries of local and regional importance; however, a decline in fisheries' yields has been observed in recent decades. Mangroves are a fundamental component of this ecosystem, though data records and field studies are lacking in describing their structure and seasonal characteristics. Mangrove litterfall production was monitored during 2012–13 and described for the dominant species, Avicennia germinans (L.) Stearn and Laguncularia racemosa (L.) C.F. Gaertn. Forest surveys and monthly litter collections were obtained along a latitudinal gradient within the larger lagoon system to characterize the forest structure, leaf biomass, and related biological indicators (chlorophyll a concentration and Normalized Difference Vegetation Index [NDVI] estimated on leaf tissues). Results showed that structural characteristics (diameter at breast height, basal area, height, and crown diameter) were greater in Huizache, corresponding to patches with a dominance of A. germinans, while higher stem density was recorded for L. racemosa in Caimanero, comparatively similar to other mangrove habitat in NW Mexico. Litterfall was highest from May to October for both species. Litterfall production was also higher overall in 2012 in comparison to 2013, possibly corresponding with meteorological differences, most notably wind conditions. Annual litterfall production was similar by species across northern and southern Sinaloa. A contrast of the NDVI by site and species showed a wide interval, including low values for A. germinans, suggesting stress conditions for this species.
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Geochemistry of great Salt Lake, Utah II: Pleistocene-Holocene evolution
Spencer, R.J.; Eugster, H.P.; Jones, B.F.
1985-01-01
Sedimentologic and biostratigraphic evidence is used to develop a geochemical model for Great Salt Lake, Utah, extending back some 30,000 yrs. B.P. Hydrologie conditions as defined by the water budget equation are characterized by a lake initially at a low, saline stage, rising by about 17,000 yrs. B.P. to fresh water basin-full conditions (Bonneville level) and then, after about 15,000 yrs. B.P., dropping rapidly to a saline stage again, as exemplified by the present situation. Inflow composition has changed through time in response to the hydrologie history. During fresh-water periods high discharge inflow is dominated by calcium bicarbonate-type river waters; during saline stages, low discharge, NaCl-rich hydrothermal springs are significant solute sources. This evolution in lake composition to NaCl domination is illustrated by the massive mirabilite deposition, free of halite, following the rapid drawdown until about 8,000 years ago, while historic droughts have yielded principally halite. Hydrologic history can be combined with inferred inflow composition to derive concentration curves with time for each major solute in the lake. Calcium concentrations before the drawdown were controlled by calcite solubility, and afterwards by aragonite. Significant amounts of solutes are removed from the lake by diffusion into the sediments. Na+, Cl- and SO42- are also involved in salt precipitation. By including pore fluid data, a surprisingly good fit has been obtained between solute input over the time period considered and the amounts actually found in lake brines, pore fluids, salt beds and sediments. Excess amounts are present for calcium, carbonate and silica, indicating detrital input. ?? 1985.
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Hamel, C P; Griffoin, J M; Bazalgette, C; Lasquellec, L; Duval, P A; Bareil, C; Beaufrère, L; Bonnet, S; Eliaou, C; Marlhens, F; Schmitt-Bernard, C F; Tuffery, S; Claustres, M; Arnaud, B
2000-12-01
To evaluate the occurrence and inheritance of various types of pigmentary retinopathy in patients followed at the outpatient clinic in the university hospital, Montpellier, France. To characterize genes and mutations causing these conditions. Ophthalmic examination and various visual tests were performed. Mutations were sought from genomic DNA by PCR amplification of exons associated with single-strand conformation analysis and/or direct sequencing. Among 315 patients over an 8-year period, cases of retinitis pigmentosa (63.2%), Usher's syndrome (10.2%), Stargardt's disease (5.4%), choroideremia (3.2%), Leber's congenital amaurosis (3.2%), congenital stationary night blindness (2.9%), cone dystrophy (2.5%), dominant optic atrophy (1.9%), X-linked juvenile retinoschisis (1.6%), Best's disease (1.6%), and others (4.3%) were diagnosed. In retinitis pigmentosa, inheritance could be determined in 54.2% of the cases including dominant autosomic (26.6%), recessive autosomic (22.6%), and X-linked cases (5%) while it could not be confirmed in 45.7% of the cases (simplex cases in the majority). For the 6 examined genes, mutations were found in 22 out of 182 propositus (12.1%). Analysis of phenotype-genotype correlations indicates that in retinitis pigmentosa, RDS is more frequently associated with macular involvement and retinal flecks, RHO with regional disease, and RPE65 with the great severity of the disease with some cases of Leber's congenital amaurosis. Identification of genes may help in diagnosis and in genetic counseling, especially in simplex cases with retinitis pigmentosa. In this latter condition, molecular diagnosis will be necessary to rationalize future treatments.
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The puzzling spectrum of HD 94509. Sounding out the extremes of Be shell star spectral morphology
NASA Astrophysics Data System (ADS)
Cowley, C. R.; Przybilla, N.; Hubrig, S.
2015-06-01
Context. The spectral features of HD 94509 are highly unusual, adding an extreme to the zoo of Be and shell stars. The shell dominates the spectrum, showing lines typical for spectral types mid-A to early-F, while the presence of a late/mid B-type central star is indicated by photospheric hydrogen line wings and helium lines. Numerous metallic absorption lines have broad wings but taper to narrow cores. They cannot be fit by Voigt profiles. Aims: We describe and illustrate unusual spectral features of this star, and make rough calculations to estimate physical conditions and abundances in the shell. Furthermore, the central star is characterized. Methods: We assume mean conditions for the shell. An electron density estimate is made from the Inglis-Teller formula. Excitation temperatures and column densities for Fe i and Fe ii are derived from curves of growth. The neutral H column density is estimated from high Paschen members. The column densities are compared with calculations made with the photoionization code Cloudy. Atmospheric parameters of the central star are constrained employing non-LTE spectrum synthesis. Results: Overall chemical abundances are close to solar. Column densities of the dominant ions of several elements, as well as excitation temperatures and the mean electron density are well accounted for by a simple model. Several features, including the degree of ionization, are less well described. Conclusions: HD 94509 is a Be star with a stable shell, close to the terminal-age main sequence. The dynamical state of the shell and the unusually shaped, but symmetric line profiles, require a separate study.
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Lacombe, D; Patton, M A; Elleau, C; Battin, J
1995-08-01
The Floating-Harbor syndrome is a growth retardation syndrome with delayed bone age, speech development, and typical facial features. The face is triangular with deep-set eyes, long eyelashes, bulbous nose, wide columella, short philtrum, and thin lips. We present an additional patient and review 16 cases from the literature. The possible phenotype in the patient's mother suggests a dominant mode of inheritance for the syndrome. The Floating Harbor syndrome is a growth deficiency syndrome characterized by proportionate short stature, characteristic face and delayed speech development. Inheritance is possibly autosomal dominant.
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Jansen, Daniela; Binder, Tobias; Eichler, Jan; Faria, Sérgio H.; Wilhelms, Frank; Kipfstuhl, Sepp; Sheldon, Simon; Miller, Heinrich; Dahl-Jensen, Dorthe; Kleiner, Thomas
2017-01-01
Microstructures from deep ice cores reflect the dynamic conditions of the drill location as well as the thermodynamic history of the drill site and catchment area in great detail. Ice core parameters (crystal lattice-preferred orientation (LPO), grain size, grain shape), mesostructures (visual stratigraphy) as well as borehole deformation were measured in a deep ice core drilled at Kohnen Station, Dronning Maud Land (DML), Antarctica. These observations are used to characterize the local dynamic setting and its rheological as well as microstructural effects at the EDML ice core drilling site (European Project for Ice Coring in Antarctica in DML). The results suggest a division of the core into five distinct sections, interpreted as the effects of changing deformation boundary conditions from triaxial deformation with horizontal extension to bedrock-parallel shear. Region 1 (uppermost approx. 450 m depth) with still small macroscopic strain is dominated by compression of bubbles and strong strain and recrystallization localization. Region 2 (approx. 450–1700 m depth) shows a girdle-type LPO with the girdle plane being perpendicular to grain elongations, which indicates triaxial deformation with dominating horizontal extension. In this region (approx. 1000 m depth), the first subtle traces of shear deformation are observed in the shape-preferred orientation (SPO) by inclination of the grain elongation. Region 3 (approx. 1700–2030 m depth) represents a transitional regime between triaxial deformation and dominance of shear, which becomes apparent in the progression of the girdle to a single maximum LPO and increasing obliqueness of grain elongations. The fully developed single maximum LPO in region 4 (approx. 2030–2385 m depth) is an indicator of shear dominance. Region 5 (below approx. 2385 m depth) is marked by signs of strong shear, such as strong SPO values of grain elongation and strong kink folding of visual layers. The details of structural observations are compared with results from a numerical ice sheet model (PISM, isotropic) for comparison of strain rate trends predicted from the large-scale geometry of the ice sheet and borehole logging data. This comparison confirms the segmentation into these depth regions and in turn provides a wider view of the ice sheet. This article is part of the themed issue ‘Microdynamics of ice’. PMID:28025296
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Weikusat, Ilka; Jansen, Daniela; Binder, Tobias; Eichler, Jan; Faria, Sérgio H; Wilhelms, Frank; Kipfstuhl, Sepp; Sheldon, Simon; Miller, Heinrich; Dahl-Jensen, Dorthe; Kleiner, Thomas
2017-02-13
Microstructures from deep ice cores reflect the dynamic conditions of the drill location as well as the thermodynamic history of the drill site and catchment area in great detail. Ice core parameters (crystal lattice-preferred orientation (LPO), grain size, grain shape), mesostructures (visual stratigraphy) as well as borehole deformation were measured in a deep ice core drilled at Kohnen Station, Dronning Maud Land (DML), Antarctica. These observations are used to characterize the local dynamic setting and its rheological as well as microstructural effects at the EDML ice core drilling site (European Project for Ice Coring in Antarctica in DML). The results suggest a division of the core into five distinct sections, interpreted as the effects of changing deformation boundary conditions from triaxial deformation with horizontal extension to bedrock-parallel shear. Region 1 (uppermost approx. 450 m depth) with still small macroscopic strain is dominated by compression of bubbles and strong strain and recrystallization localization. Region 2 (approx. 450-1700 m depth) shows a girdle-type LPO with the girdle plane being perpendicular to grain elongations, which indicates triaxial deformation with dominating horizontal extension. In this region (approx. 1000 m depth), the first subtle traces of shear deformation are observed in the shape-preferred orientation (SPO) by inclination of the grain elongation. Region 3 (approx. 1700-2030 m depth) represents a transitional regime between triaxial deformation and dominance of shear, which becomes apparent in the progression of the girdle to a single maximum LPO and increasing obliqueness of grain elongations. The fully developed single maximum LPO in region 4 (approx. 2030-2385 m depth) is an indicator of shear dominance. Region 5 (below approx. 2385 m depth) is marked by signs of strong shear, such as strong SPO values of grain elongation and strong kink folding of visual layers. The details of structural observations are compared with results from a numerical ice sheet model (PISM, isotropic) for comparison of strain rate trends predicted from the large-scale geometry of the ice sheet and borehole logging data. This comparison confirms the segmentation into these depth regions and in turn provides a wider view of the ice sheet.This article is part of the themed issue 'Microdynamics of ice'. © 2016 The Authors.
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NASA Astrophysics Data System (ADS)
Weikusat, Ilka; Jansen, Daniela; Binder, Tobias; Eichler, Jan; Faria, Sérgio H.; Wilhelms, Frank; Kipfstuhl, Sepp; Sheldon, Simon; Miller, Heinrich; Dahl-Jensen, Dorthe; Kleiner, Thomas
2017-02-01
Microstructures from deep ice cores reflect the dynamic conditions of the drill location as well as the thermodynamic history of the drill site and catchment area in great detail. Ice core parameters (crystal lattice-preferred orientation (LPO), grain size, grain shape), mesostructures (visual stratigraphy) as well as borehole deformation were measured in a deep ice core drilled at Kohnen Station, Dronning Maud Land (DML), Antarctica. These observations are used to characterize the local dynamic setting and its rheological as well as microstructural effects at the EDML ice core drilling site (European Project for Ice Coring in Antarctica in DML). The results suggest a division of the core into five distinct sections, interpreted as the effects of changing deformation boundary conditions from triaxial deformation with horizontal extension to bedrock-parallel shear. Region 1 (uppermost approx. 450 m depth) with still small macroscopic strain is dominated by compression of bubbles and strong strain and recrystallization localization. Region 2 (approx. 450-1700 m depth) shows a girdle-type LPO with the girdle plane being perpendicular to grain elongations, which indicates triaxial deformation with dominating horizontal extension. In this region (approx. 1000 m depth), the first subtle traces of shear deformation are observed in the shape-preferred orientation (SPO) by inclination of the grain elongation. Region 3 (approx. 1700-2030 m depth) represents a transitional regime between triaxial deformation and dominance of shear, which becomes apparent in the progression of the girdle to a single maximum LPO and increasing obliqueness of grain elongations. The fully developed single maximum LPO in region 4 (approx. 2030-2385 m depth) is an indicator of shear dominance. Region 5 (below approx. 2385 m depth) is marked by signs of strong shear, such as strong SPO values of grain elongation and strong kink folding of visual layers. The details of structural observations are compared with results from a numerical ice sheet model (PISM, isotropic) for comparison of strain rate trends predicted from the large-scale geometry of the ice sheet and borehole logging data. This comparison confirms the segmentation into these depth regions and in turn provides a wider view of the ice sheet. This article is part of the themed issue 'Microdynamics of ice'.
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Biological Characterization of Microenvironments in a Hypersaline Cold Spring Mars Analog
Sapers, Haley M.; Ronholm, Jennifer; Raymond-Bouchard, Isabelle; Comrey, Raven; Osinski, Gordon R.; Whyte, Lyle G.
2017-01-01
While many habitable niches on Earth are characterized by permanently cold conditions, little is known about the spatial structure of seasonal communities and the importance of substrate-cell associations in terrestrial cyroenvironments. Here we use the 16S rRNA gene as a marker for genetic diversity to compare two visually distinct but spatially integrated surface microbial mats on Axel Heiberg Island, Canadian high arctic, proximal to a perennial saline spring. This is the first study to describe the bacterial diversity in microbial mats on Axel Heiberg Island. The hypersaline springs on Axel Heiberg represent a unique analog to putative subsurface aquifers on Mars. The Martian subsurface represents the longest-lived potentially habitable environment on Mars and a better understanding of the microbial communities on Earth that thrive in analog conditions will help direct future life detection missions. The microbial mats sampled on Axel Heiberg are only visible during the summer months in seasonal flood plains formed by melt water and run-off from the proximal spring. Targeted-amplicon sequencing revealed that not only does the bacterial composition of the two mat communities differ substantially from the sediment community of the proximal cold spring, but that the mat communities are distinct from any other microbial community in proximity to the Arctic springs studied to date. All samples are dominated by Gammaproteobacteria: Thiotichales is dominant within the spring samples while Alteromonadales comprises a significant component of the mat communities. The two mat samples differ in their Thiotichales:Alteromonadales ratio and contribution of Bacteroidetes to overall diversity. The red mats have a greater proportion of Alteromonadales and Bacteroidetes reads. The distinct bacterial composition of the mat bacterial communities suggests that the spring communities are not sourced from the surface, and that seasonal melt events create ephemerally habitable niches with distinct microbial communities in the Canadian high arctic. The finding that these surficial complex microbial communities exist in close proximity to perennial springs demonstrates the existence of a transiently habitable niche in an important Mars analog site. PMID:29312221
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NASA Astrophysics Data System (ADS)
Lowry, David; Fisher, Rebecca; Zazzeri, Giulia; al-Shalaan, Aalia; France, James; Lanoisellé, Mathias; Nisbet, Euan
2017-04-01
Large landfill sites remain a significant source of methane emissions in developed and developing countries, with a global estimated flux of 29 Tg / yr in the EDGAR 2008 database. This is significantly lower than 20 years ago due to the introduction of gas extraction systems, but active cells still emit significant amounts of methane before the gas is ready for extraction. Historically the methane was either passively oxidized through topsoil layers or flared. Oxidation is still the primary method of methane removal in many countries, and covered, remediated cells across the world continue to emit small quantities of methane. The isotopic signatures of methane from landfill gas wells, and that emitted from active and closed cells have been characterized for more than 20 UK landfills since 2011, with more recent work in Kuwait and Hong Kong. Since 2013 the emission plumes have been identified by a mobile measurement system (Zazzeri et al., 2015). Emissions in all 3 countries have a characteristic δ13C signature of -58 ± 3 ‰ dominated by emissions from the active cells, despite the hot, dry conditions of Kuwait and the hot, humid conditions of Hong Kong. Gas well samples define a similar range. Surface emissions from closed cells and closed landfills are mostly in the range -56 to -52 ‰Ṫhese are much more depleted values than those observed in the 1990s (up to -35 ) when soil oxidation was the dominant mechanism of methane removal. Calculations using isotopic signatures of the amount of methane oxidised in these closed areas before emission to atmosphere range from 5 to 15%, but average less than 10%, and are too small to calculate from the high-emitting active cells. Compared to other major methane sources, landfills have the most consistent isotopic signature globally, and are distinct from the more 13C-enriched natural gas, combustion and biomass burning sources. Zazzeri, G. et al. (2015) Plume mapping and isotopic characterization of anthropogenic methane sources, Atmospheric Environment, 110, 151-162, doi.org/10.1016/j.atmosenv.2015.03.029.
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Biological Characterization of Microenvironments in a Hypersaline Cold Spring Mars Analog.
Sapers, Haley M; Ronholm, Jennifer; Raymond-Bouchard, Isabelle; Comrey, Raven; Osinski, Gordon R; Whyte, Lyle G
2017-01-01
While many habitable niches on Earth are characterized by permanently cold conditions, little is known about the spatial structure of seasonal communities and the importance of substrate-cell associations in terrestrial cyroenvironments. Here we use the 16S rRNA gene as a marker for genetic diversity to compare two visually distinct but spatially integrated surface microbial mats on Axel Heiberg Island, Canadian high arctic, proximal to a perennial saline spring. This is the first study to describe the bacterial diversity in microbial mats on Axel Heiberg Island. The hypersaline springs on Axel Heiberg represent a unique analog to putative subsurface aquifers on Mars. The Martian subsurface represents the longest-lived potentially habitable environment on Mars and a better understanding of the microbial communities on Earth that thrive in analog conditions will help direct future life detection missions. The microbial mats sampled on Axel Heiberg are only visible during the summer months in seasonal flood plains formed by melt water and run-off from the proximal spring. Targeted-amplicon sequencing revealed that not only does the bacterial composition of the two mat communities differ substantially from the sediment community of the proximal cold spring, but that the mat communities are distinct from any other microbial community in proximity to the Arctic springs studied to date. All samples are dominated by Gammaproteobacteria: Thiotichales is dominant within the spring samples while Alteromonadales comprises a significant component of the mat communities. The two mat samples differ in their Thiotichales:Alteromonadales ratio and contribution of Bacteroidetes to overall diversity. The red mats have a greater proportion of Alteromonadales and Bacteroidetes reads. The distinct bacterial composition of the mat bacterial communities suggests that the spring communities are not sourced from the surface, and that seasonal melt events create ephemerally habitable niches with distinct microbial communities in the Canadian high arctic. The finding that these surficial complex microbial communities exist in close proximity to perennial springs demonstrates the existence of a transiently habitable niche in an important Mars analog site.
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Signal Processing Methods for Liquid Rocket Engine Combustion Stability Assessments
NASA Technical Reports Server (NTRS)
Kenny, R. Jeremy; Lee, Erik; Hulka, James R.; Casiano, Matthew
2011-01-01
The J2X Gas Generator engine design specifications include dynamic, spontaneous, and broadband combustion stability requirements. These requirements are verified empirically based high frequency chamber pressure measurements and analyses. Dynamic stability is determined with the dynamic pressure response due to an artificial perturbation of the combustion chamber pressure (bomb testing), and spontaneous and broadband stability are determined from the dynamic pressure responses during steady operation starting at specified power levels. J2X Workhorse Gas Generator testing included bomb tests with multiple hardware configurations and operating conditions, including a configuration used explicitly for engine verification test series. This work covers signal processing techniques developed at Marshall Space Flight Center (MSFC) to help assess engine design stability requirements. Dynamic stability assessments were performed following both the CPIA 655 guidelines and a MSFC in-house developed statistical-based approach. The statistical approach was developed to better verify when the dynamic pressure amplitudes corresponding to a particular frequency returned back to pre-bomb characteristics. This was accomplished by first determining the statistical characteristics of the pre-bomb dynamic levels. The pre-bomb statistical characterization provided 95% coverage bounds; these bounds were used as a quantitative measure to determine when the post-bomb signal returned to pre-bomb conditions. The time for post-bomb levels to acceptably return to pre-bomb levels was compared to the dominant frequency-dependent time recommended by CPIA 655. Results for multiple test configurations, including stable and unstable configurations, were reviewed. Spontaneous stability was assessed using two processes: 1) characterization of the ratio of the peak response amplitudes to the excited chamber acoustic mode amplitudes and 2) characterization of the variability of the peak response's frequency over the test duration. This characterization process assists in evaluating the discreteness of a signal as well as the stability of the chamber response. Broadband stability was assessed using a running root-mean-square evaluation. These techniques were also employed, in a comparative analysis, on available Fastrac data, and these results are presented here.
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Vertebral Aspergillosis in a Patient with Autosomal-Dominant Hyper-IgE Syndrome
Ma, Hong; Kuang, Lei; Wang, Bing; Lian, Zhesi
2014-01-01
We present a report of an autosomal-dominant hyper-IgE syndrome patient with vertebral aspergillosis. Early diagnosis and antifungal therapy with surgery are crucial for improving the outcome of this aggressive condition. PMID:24197892
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Pfattheicher, Stefan
2017-01-01
The dual-hormone hypothesis suggests that testosterone is positively associated with status-seeking tendencies such as aggression and dominance, particularly in individuals with low levels of cortisol. Although recent research supports the dual-hormone hypothesis, its boundary conditions under which the dual-hormone interaction is likely to emerge are not clearly understood. In the present study (N = 153), the dual-hormone hypothesis was empirically tested in the context of an economic game that included a decision whether to dominate another individual. We also examined whether the dual-hormone interaction is more likely to be found in individuals who are chronically prone to dominance tendencies. Results revealed a significant testosterone × cortisol interaction in line with the dual-hormone hypothesis. Additionally, the testosterone × cortisol interaction was only significant in individuals with a high level of chronic dominance. Overall, the present work suggests that chronic personality tendencies should be taken into account in order to explore (the boundary conditions) of hormone-behavior associations. Aggr. Behav. 43:85-92, 2017. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.
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Composite Materials Characterization and Development at AFWAL
NASA Technical Reports Server (NTRS)
Browning, C. E.
1984-01-01
The development of test methodology for characterizing matrix dominated failure modes is discussed emphasizing issues of matrix cracking, delamination under static loading, and the relationship of composite properties to matrix properties. Both strength characterization and classical techniques of linear elastic fracture mechanics were examined. Materials development studies are also discussed. Major areas of interest include acetylene-terminated and bismaleimide resins for 350 to 450 deg use, thermoplastics development, and failure resistant composite concepts.
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Mapping tree density in forests of the southwestern USA using Landsat 8 data
Humagain, Kamal; Portillo-Quintero, Carlos; Cox, Robert D.; Cain, James W.
2017-01-01
The increase of tree density in forests of the American Southwest promotes extreme fire events, understory biodiversity losses, and degraded habitat conditions for many wildlife species. To ameliorate these changes, managers and scientists have begun planning treatments aimed at reducing fuels and increasing understory biodiversity. However, spatial variability in tree density across the landscape is not well-characterized, and if better known, could greatly influence planning efforts. We used reflectance values from individual Landsat 8 bands (bands 2, 3, 4, 5, 6, and 7) and calculated vegetation indices (difference vegetation index, simple ratios, and normalized vegetation indices) to estimate tree density in an area planned for treatment in the Jemez Mountains, New Mexico, characterized by multiple vegetation types and a complex topography. Because different vegetation types have different spectral signatures, we derived models with multiple predictor variables for each vegetation type, rather than using a single model for the entire project area, and compared the model-derived values to values collected from on-the-ground transects. Among conifer-dominated areas (73% of the project area), the best models (as determined by corrected Akaike Information Criteria (AICc)) included Landsat bands 2, 3, 4, and 7 along with simple ratios, normalized vegetation indices, and the difference vegetation index (R2 values for ponderosa: 0.47, piñon-juniper: 0.52, and spruce-fir: 0.66). On the other hand, in aspen-dominated areas (9% of the project area), the best model included individual bands 4 and 2, simple ratio, and normalized vegetation index (R2 value: 0.97). Most areas dominated by ponderosa, pinyon-juniper, or spruce-fir had more than 100 trees per hectare. About 54% of the study area has medium to high density of trees (100–1000 trees/hectare), and a small fraction (4.5%) of the area has very high density (>1000 trees/hectare). Our results provide a better understanding of tree density for identifying areas in need of treatment and planning for more effective treatment. Our analysis also provides an integrated method of estimating tree density across complex landscapes that could be useful for further restoration planning.
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Eble, C.F.; Greb, S.F.; Williams, D.A.
2001-01-01
The Western Kentucky Coal Field is the southern tip of the Eastern Interior, or Illinois Basin. Pennsylvanian rocks in this area, which include conglomerate, sandstone, shale, limestone and coal, were deposited primarily in coastal-deltaic settings at a time when western Kentucky was located close to the equator. This paper discusses temporal changes in regional sedimentation patterns and coal-forming floras of Lower and Middle Pennsylvanian strata in the Western Kentucky Coal Field. Lower Pennsylvanian strata of the Caseyville Formation are characterized by paleovalley-filling sedimentation patterns and extabasinal quartz pebbles. Caseyville Formation coals are characterized thin and discontinuous and were strongly influenced by subsidence within underlying paleovalleys, and the dissected lower Pennsylvanian paleotopography. Caseyville coals are commonly dominated by Lycospora, but can also have variable palynofloras, which probably reflects variable edaphic conditions and edge effects within small, patchy paleomires. Tradewater Formation strata show increased marine influences and tidal-estuarine sedimentation, especially in the middle and upper parts. Coal beds in the lower part of the Tradewater typically are thin and discontinuous, although some economically important beds are present. Coals become thicker, more abundant and more laterally persistent towards the top of the formation. Palynologically, lower and middle Tradewater Formation coals are dominated by Lycospora, but begin to show increased amounts of tree fern spores. Middle and upper Tradewater coals are thicker and more continuous, and contain high percentages of tree fern spores. In addition, cordaite pollen is locally abundant in this interval. Carbondale and Shelburn (Desmoinesian) strata are much more laterally continuous, and occur within classic cyclothems that can be traced across the coal field. Cyclothems have long been interpreted as being eustatically driven, and glacio-eustacy controlled not only sedimentation but also the formation of Desmoinesian paleomires. Palynologically, Carbondale and Shelburn coals are either dominated by Lycospora or have heterogeneous palynofloras. Palynologic and coal-quality data suggest that hydrologic base level may have been the primary control on Desmoinesian paleomires, rather than paleoclimate, as the coals display rheotrophic, rather than ombrotrophic characteristics. ?? 2001 Elsevier Science B.V. All rights reserved.
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Extremal values on Zagreb indices of trees with given distance k-domination number.
Pei, Lidan; Pan, Xiangfeng
2018-01-01
Let [Formula: see text] be a graph. A set [Formula: see text] is a distance k -dominating set of G if for every vertex [Formula: see text], [Formula: see text] for some vertex [Formula: see text], where k is a positive integer. The distance k -domination number [Formula: see text] of G is the minimum cardinality among all distance k -dominating sets of G . The first Zagreb index of G is defined as [Formula: see text] and the second Zagreb index of G is [Formula: see text]. In this paper, we obtain the upper bounds for the Zagreb indices of n -vertex trees with given distance k -domination number and characterize the extremal trees, which generalize the results of Borovićanin and Furtula (Appl. Math. Comput. 276:208-218, 2016). What is worth mentioning, for an n -vertex tree T , is that a sharp upper bound on the distance k -domination number [Formula: see text] is determined.
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Partner stalking: psychological dominance or "business as usual"?
Logan, Tk; Walker, Robert
2009-07-01
Partner stalking may remain one of the least clearly understood forms of intimate violence. This review examines the literature guided by two main goals: (a) to examine how partner stalking is distinct from nonpartner forms of stalking and (b) to describe areas of research on partner stalking that need to be systematically addressed to deepen the understanding of partner stalking and to craft more effective mental health and criminal justice responses. These areas of research include three overarching questions: (a) Is partner stalking a unique form of psychological dominance or is it just "business as usual"? (b) What components characterize stalking differently from business as usual for women? and (c) How is psychological distress within the context of partner stalking best characterized?
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Bulk and edge spin transport in topological magnon insulators
NASA Astrophysics Data System (ADS)
Rückriegel, Andreas; Brataas, Arne; Duine, Rembert A.
2018-02-01
We investigate the spin transport properties of a topological magnon insulator, a magnetic insulator characterized by topologically nontrivial bulk magnon bands and protected magnon edge modes located in the bulk band gaps. Employing the Landau-Lifshitz-Gilbert phenomenology, we calculate the spin current driven through a normal metal |topological magnon insulator |normal metal heterostructure by a spin accumulation imbalance between the metals, with and without random lattice defects. We show that bulk and edge transport are characterized by different length scales. This results in a characteristic system size where the magnon transport crosses over from being bulk dominated for small systems to edge dominated for larger systems. These findings are generic and relevant for topological transport in systems of nonconserved bosons.
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NASA Technical Reports Server (NTRS)
Pollmann, Konrad W.; Stodieck, Louis S.; Luttges, Marvin W.
1994-01-01
Microgravity can provide a diffusion-dominated environment for double-diffusion and diffusion-reaction experiments otherwise disrupted by buoyant convection or sedimentation. In sliding solvent diffusion cells, a diffusion interface between two liquid columns is achieved by aligning two offset sliding wells. Fluid in contact with the sliding lid of the cavities is subjected to an applied shear stress. The momentum change by the start/stop action of the well creates an additional hydrodynamical force. In microgravity, these viscous and inertial forces are sufficiently large to deform the diffusion interface and induce hydrodynamic transfer between the wells. A series of KC-135 parabolic flight experiments were conducted to characterize these effects and establish baseline data for microgravity diffusion experiments. Flow visualizations show the diffusion interface to be deformed in a sinusoidal fashion following well alignment. After the wells were separated again in a second sliding movement, the total induced liquid transfer was determined and normalized by the well aspect ratio. The normalized transfer decreased linearly with Reynolds number from 3.3 to 4.0% (w/v) for Re = 0.4 (Stokes flow) to a minimum of 1.0% for Re = 23 to 30. Reynolds numbers that provide minimum induced transfers are characterized by an interface that is highly deformed and unsuitable for diffusion measurements. Flat diffusion interfaces acceptable for diffusion measurements are obtained with Reynolds numbers on the order of 7 to 10. Microgravity experiments aboard a sounding rocket flight verified counterdiffusion of different solutes to be diffusion dominated. Ground control experiments showed enhanced mixing by double-diffusive convection. Careful selection of experimental parameters improves initial conditions and minimizes induced transfer rates.
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Isolation and characterization of low-sulphur-tolerant mutants of Arabidopsis
Wu, Yu; Zhao, Qing; Gao, Lei; Yu, Xiao-Min; Fang, Ping; Oliver, David J.; Xiang, Cheng-Bin
2010-01-01
Sulphur is an essential element for plant growth and development as well as for defence against biotic and abiotic stresses. Increasing sulphate utilization efficiency (SUE) is an important issue for crop improvement. Little is known about the genetic determinants of sulphate utilization efficiency. No gain-of-function mutants with improved SUE have been reported to date. Here the isolation and characterization of two low-sulphur-tolerant mutants, sue3 and sue4 are reported using a high-throughput genetic screen where a ‘sulphur-free’ solid medium was devised to give the selection pressure necessary to suppress the growth of the wild-type seedlings. Both mutants showed improved tolerance to low sulphur conditions and well-developed root systems. The mutant phenotype of both sue3 and sue4 was specific to sulphate deficiency and the mutants displayed enhanced tolerance to heavy metal and oxidative stress. Genetic analysis revealed that sue3 was caused by a single recessive nuclear mutation while sue4 was caused by a single dominant nuclear mutation. The recessive locus in sue3 is the previously identified VirE2-interacting Protein 1. The dominant locus in sue4 is a function-unknown locus activated by the four enhancers on the T-DNA. The function of SUE3 and SUE4 in low sulphur tolerance was confirmed either by multiple mutant alleles or by recapitulation analysis. Taken together, our results demonstrate that this genetic screen is a reasonable approach to isolate Arabidopsis mutants with improved low sulphur tolerance and potentially with enhanced sulphate utilization efficiency. The two loci identified in sue3 and sue4 should assist in understanding the molecular mechanisms of low sulphur tolerance. PMID:20547563
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Faith, J Tyler; Tryon, Christian A; Peppe, Daniel J; Beverly, Emily J; Blegen, Nick; Blumenthal, Scott; Chritz, Kendra L; Driese, Steven G; Patterson, David
2015-06-01
The opening and closing of the equatorial East African forest belt during the Quaternary is thought to have influenced the biogeographic histories of early modern humans and fauna, although precise details are scarce due to a lack of archaeological and paleontological records associated with paleoenvironmental data. With this in mind, we provide a description and paleoenvironmental reconstruction of the Late Pleistocene Middle Stone Age (MSA) artifact- and fossil-bearing sediments from Karungu, located along the shores of Lake Victoria in western Kenya. Artifacts recovered from surveys and controlled excavations are typologically MSA and include points, blades, and Levallois flakes and cores, as well as obsidian flakes similar in geochemical composition to documented sources near Lake Naivasha (250 km east). A combination of sedimentological, paleontological, and stable isotopic evidence indicates a semi-arid environment characterized by seasonal precipitation and the dominance of C4 grasslands, likely associated with a substantial reduction in Lake Victoria. The well-preserved fossil assemblage indicates that these conditions are associated with the convergence of historically allopatric ungulates from north and south of the equator, in agreement with predictions from genetic observations. Analysis of the East African MSA record reveals previously unrecognized north-south variation in assemblage composition that is consistent with episodes of population fragmentation during phases of limited dispersal potential. The grassland-associated MSA assemblages from Karungu and nearby Rusinga Island are characterized by a combination of artifact types that is more typical of northern sites. This may reflect the dispersal of behavioral repertoires-and perhaps human populations-during a paleoenvironmental phase dominated by grasslands. Copyright © 2015 Elsevier Ltd. All rights reserved.
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Baskar, Venkidasamy; Park, Se Won
2015-07-01
Glucosinolates (GSL) are one of the major secondary metabolites of the Brassicaceae family. In the present study, we aim at characterizing the multiple paralogs of aliphatic GSL regulators, such as BrMYB28 and BrMYB29 genes in Brassica rapa ssp. pekinensis, by quantitative real-time PCR (qRT-PCR) analysis in different tissues and at various developmental stages. An overlapping gene expression pattern between the BrMYBs as well as their downstream genes (DSGs) was found at different developmental stages. Among the BrMYB28 and BrMYB29 paralogous genes, the BrMYB28.3 and BrMYB29.1 genes were dominantly expressed in most of the developmental stages, compared to the other paralogs of the BrMYB genes. Furthermore, the differential expression pattern of the BrMYBs was observed under various stress treatments. Interestingly, BrMYB28.2 showed the least expression in most developmental stages, while its expression was remarkably high in different stress conditions. More specifically, the BrMYB28.2, BrMYB28.3, and BrMYB29.1 genes were highly responsive to various abiotic and biotic stresses, further indicating their possible role in stress tolerance. Moreover, the in silico cis motif analysis in the upstream regulatory regions of BrMYBs showed the presence of various putative stress-specific motifs, which further indicated their responsiveness to biotic and abiotic stresses. These observations suggest that the dominantly expressed BrMYBs, both in different developmental stages and under various stress treatments (BrMYB28.3 and BrMYB29.1), may be potential candidate genes for altering the GSL level through genetic modification studies in B. rapa ssp. pekinensis. Copyright © 2015. Published by Elsevier SAS.
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Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations
Chopyk, Jessica; Allard, Sarah; Nasko, Daniel J.; Bui, Anthony; Mongodin, Emmanuel F.; Sapkota, Amy R.
2018-01-01
Agricultural ponds have a great potential as a means of capture and storage of water for irrigation. However, pond topography (small size, shallow depth) leaves them susceptible to environmental, agricultural, and anthropogenic exposures that may influence microbial dynamics. Therefore, the aim of this project was to characterize the bacterial and viral communities of pond water in the Mid-Atlantic United States with a focus on the late season (October–December), where decreasing temperature and nutrient levels can affect the composition of microbial communities. Ten liters of freshwater from an agricultural pond were sampled monthly, and filtered sequentially through 1 and 0.2 μm filter membranes. Total DNA was then extracted from each filter, and the bacterial communities were characterized using 16S rRNA gene sequencing. The remaining filtrate was chemically concentrated for viruses, DNA-extracted, and shotgun sequenced. Bacterial community profiling showed significant fluctuations over the sampling period, corresponding to changes in the condition of the pond freshwater (e.g., pH, nutrient load). In addition, there were significant differences in the alpha-diversity and core bacterial operational taxonomic units (OTUs) between water fractions filtered through different pore sizes. The viral fraction was dominated by tailed bacteriophage of the order Caudovirales, largely those of the Siphoviridae family. Moreover, while present, genes involved in virulence/antimicrobial resistance were not enriched within the viral fraction during the study period. Instead, the viral functional profile was dominated by phage associated proteins, as well as those related to nucleotide production. Overall, these data suggest that agricultural pond water harbors a diverse core of bacterial and bacteriophage species whose abundance and composition are influenced by environmental variables characteristic of pond topology and the late season. PMID:29740420
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Nishiyama, Shoko; Slack, Olga A. L.; Lokugamage, Nandadeva; Hill, Terence E.; Juelich, Terry L.; Zhang, Lihong; Smith, Jennifer K.; Perez, David; Gong, Bin; Freiberg, Alexander N.; Ikegami, Tetsuro
2016-01-01
ABSTRACT Rift Valley fever is a mosquito-borne zoonotic disease affecting ruminants and humans. Rift Valley fever virus (RVFV: family Bunyaviridae, genus Phlebovirus) causes abortions and fetal malformations in ruminants, and hemorrhagic fever, encephalitis, or retinitis in humans. The live-attenuated MP-12 vaccine is conditionally licensed for veterinary use in the US. However, this vaccine lacks a marker for the differentiation of vaccinated from infected animals (DIVA). NSs gene is dispensable for RVFV replication, and thus, rMP-12 strains lacking NSs gene is applicable to monitor vaccinated animals. However, the immunogenicity of MP-12 lacking NSs was not as high as parental MP-12. Thus, chimeric MP-12 strains encoding NSs from either Toscana virus (TOSV), sandfly fever Sicilian virus (SFSV) or Punta Toro virus Adames strain (PTA) were characterized previously. Although chimeric MP-12 strains are highly immunogenic, the attenuation through the S-segment remains unknown. Using pathogenic ZH501 strain, we aimed to demonstrate the attenuation of ZH501 strain through chimeric S-segment encoding either the NSs of TOSV, SFSV, PTA, or Punta Toro virus Balliet strain (PTB). In addition, we characterized rZH501 encoding a human dominant-negative PKR (PKRΔE7), which also enhances the immunogenicity of MP-12. Study done on mice revealed that attenuation of rZH501 occurred through the S-segment encoding either PKRΔE7 or SFSV NSs. However, rZH501 encoding either TOSV, PTA, or PTB NSs in the S-segment uniformly caused lethal encephalitis. Our results indicated that the S-segments encoding PKRΔE7 or SFSV NSs are attenuated and thus applicable toward next generation MP-12 vaccine candidates that encode a DIVA marker. PMID:27248570
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Nishiyama, Shoko; Slack, Olga A L; Lokugamage, Nandadeva; Hill, Terence E; Juelich, Terry L; Zhang, Lihong; Smith, Jennifer K; Perez, David; Gong, Bin; Freiberg, Alexander N; Ikegami, Tetsuro
2016-11-16
Rift Valley fever is a mosquito-borne zoonotic disease affecting ruminants and humans. Rift Valley fever virus (RVFV: family Bunyaviridae, genus Phlebovirus) causes abortions and fetal malformations in ruminants, and hemorrhagic fever, encephalitis, or retinitis in humans. The live-attenuated MP-12 vaccine is conditionally licensed for veterinary use in the US. However, this vaccine lacks a marker for the differentiation of vaccinated from infected animals (DIVA). NSs gene is dispensable for RVFV replication, and thus, rMP-12 strains lacking NSs gene is applicable to monitor vaccinated animals. However, the immunogenicity of MP-12 lacking NSs was not as high as parental MP-12. Thus, chimeric MP-12 strains encoding NSs from either Toscana virus (TOSV), sandfly fever Sicilian virus (SFSV) or Punta Toro virus Adames strain (PTA) were characterized previously. Although chimeric MP-12 strains are highly immunogenic, the attenuation through the S-segment remains unknown. Using pathogenic ZH501 strain, we aimed to demonstrate the attenuation of ZH501 strain through chimeric S-segment encoding either the NSs of TOSV, SFSV, PTA, or Punta Toro virus Balliet strain (PTB). In addition, we characterized rZH501 encoding a human dominant-negative PKR (PKRΔE7), which also enhances the immunogenicity of MP-12. Study done on mice revealed that attenuation of rZH501 occurred through the S-segment encoding either PKRΔE7 or SFSV NSs. However, rZH501 encoding either TOSV, PTA, or PTB NSs in the S-segment uniformly caused lethal encephalitis. Our results indicated that the S-segments encoding PKRΔE7 or SFSV NSs are attenuated and thus applicable toward next generation MP-12 vaccine candidates that encode a DIVA marker.
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Isolation and characterization of low-sulphur-tolerant mutants of Arabidopsis.
Wu, Yu; Zhao, Qing; Gao, Lei; Yu, Xiao-Min; Fang, Ping; Oliver, David J; Xiang, Cheng-Bin
2010-07-01
Sulphur is an essential element for plant growth and development as well as for defence against biotic and abiotic stresses. Increasing sulphate utilization efficiency (SUE) is an important issue for crop improvement. Little is known about the genetic determinants of sulphate utilization efficiency. No gain-of-function mutants with improved SUE have been reported to date. Here the isolation and characterization of two low-sulphur-tolerant mutants, sue3 and sue4 are reported using a high-throughput genetic screen where a 'sulphur-free' solid medium was devised to give the selection pressure necessary to suppress the growth of the wild-type seedlings. Both mutants showed improved tolerance to low sulphur conditions and well-developed root systems. The mutant phenotype of both sue3 and sue4 was specific to sulphate deficiency and the mutants displayed enhanced tolerance to heavy metal and oxidative stress. Genetic analysis revealed that sue3 was caused by a single recessive nuclear mutation while sue4 was caused by a single dominant nuclear mutation. The recessive locus in sue3 is the previously identified VirE2-interacting Protein 1. The dominant locus in sue4 is a function-unknown locus activated by the four enhancers on the T-DNA. The function of SUE3 and SUE4 in low sulphur tolerance was confirmed either by multiple mutant alleles or by recapitulation analysis. Taken together, our results demonstrate that this genetic screen is a reasonable approach to isolate Arabidopsis mutants with improved low sulphur tolerance and potentially with enhanced sulphate utilization efficiency. The two loci identified in sue3 and sue4 should assist in understanding the molecular mechanisms of low sulphur tolerance.
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Chao de la Barca, Juan Manuel; Simard, Gilles; Sarzi, Emmanuelle; Chaumette, Tanguy; Rousseau, Guillaume; Chupin, Stéphanie; Gadras, Cédric; Tessier, Lydie; Ferré, Marc; Chevrollier, Arnaud; Desquiret-Dumas, Valérie; Gueguen, Naïg; Leruez, Stéphanie; Verny, Christophe; Miléa, Dan; Bonneau, Dominique; Amati-Bonneau, Patrizia; Procaccio, Vincent; Hamel, Christian; Lenaers, Guy; Reynier, Pascal; Prunier-Mirebeau, Delphine
2017-02-01
Dominant optic atrophy (MIM No. 165500) is a blinding condition related to mutations in OPA1, a gene encoding a large GTPase involved in mitochondrial inner membrane dynamics. Although several mouse models mimicking the disease have been developed, the pathophysiological mechanisms responsible for retinal ganglion cell degeneration remain poorly understood. Using a targeted metabolomic approach, we measured the concentrations of 188 metabolites in nine tissues, that is, brain, three types of skeletal muscle, heart, liver, retina, optic nerve, and plasma in symptomatic 11-month-old Opa1delTTAG/+ mice. Significant metabolic signatures were found only in the optic nerve and plasma of female mice. The optic nerve signature was characterized by altered concentrations of phospholipids, amino acids, acylcarnitines, and carnosine, whereas the plasma signature showed decreased concentrations of amino acids and sarcosine associated with increased concentrations of several phospholipids. In contrast, the investigation of 3-month-old presymptomatic Opa1delTTAG/+ mice showed no specific plasma signature but revealed a significant optic nerve signature in both sexes, although with a sex effect. The Opa1delTTAG/+ versus wild-type optic nerve signature was characterized by the decreased concentrations of 10 sphingomyelins and 10 lysophosphatidylcholines, suggestive of myelin sheath alteration, and by alteration in the concentrations of metabolites involved in neuroprotection, such as dimethylarginine, carnitine, spermine, spermidine, carnosine, and glutamate, suggesting a concomitant axonal metabolic dysfunction. Our comprehensive metabolomic investigations revealed in symptomatic as well as in presymptomatic Opa1delTTAG/+ mice, a specific sensitiveness of the optic nerve to Opa1 insufficiency, opening new routes for protective therapeutic strategies.
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Biomass assessment of microbial surface communities by means of hyperspectral remote sensing data.
Rodríguez-Caballero, Emilio; Paul, Max; Tamm, Alexandra; Caesar, Jennifer; Büdel, Burkhard; Escribano, Paula; Hill, Joachim; Weber, Bettina
2017-05-15
Dryland vegetation developed morphological and physiological strategies to cope with drought. However, as aridity increases, vascular plant coverage gets sparse and microbially-dominated surface communities (MSC), comprising cyanobacteria, algae, lichens and bryophytes together with heterotropic bacteria, archaea and fungi, gain relevance. Nevertheless, the relevance of MSC net primary productivity has only rarely been considered in ecosystem scale studies, and detailed information on their contribution to the total photosynthetic biomass reservoir is largely missing. In this study, we mapped the spatial distribution of two different MSC (biological soil crusts and quartz fields hosting hypolithic crusts) at two different sites within the South African Succulent Karoo (Soebatsfontein and Knersvlakte). Then we characterized both types of MSC in terms of chlorophyll content, and combining these data with the biocrust and quartz field maps, we estimated total biomass values of MSCs and their spatial patterns within the two different ecosystems. Our results revealed that MSC are important vegetation components of the South African Karoo biome, revealing clear differences between the two sites. At Soebatsfontein, MSC occurred as biological soil crusts (biocrusts), which covered about one third of the landscape reaching an overall biomass value of ~480gha -1 of chlorophyll a+b at the landscape scale. In the Knersvlakte, which is characterized by harsher environmental conditions (i.e. higher solar radiation and potential evapotranspiration), MSC occurred as biocrusts, but also formed hypolithic crusts growing on the lower soil-immersed parts of translucent quartz pebbles. Whereas chlorophyll concentrations of biocrusts and hypolithic crusts where insignificantly lower in the Knersvlakte, the overall MSC biomass reservoir was by far larger with ~780gha -1 of chlorophyll a+b. Thus, the complementary microbially-dominated surface communities promoted biomass formation within the environmentally harsh Knersvlakte ecosystem. Copyright © 2017 Elsevier B.V. All rights reserved.
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A sediment-dispersal model for the South Texas continental shelf, northwest Gulf of Mexico
Shideler, G.L.
1978-01-01
Textural-distribution patterns of sea-floor sediments on the South Texas continental shelf between Matagorda Bay and the U.S.-Mexico international boundary were evaluated as part of a regional environmental-studies program. Sediment textural gradients support a conceptual model for the regional sediment-dispersal system, which is characterized by both net offshore transport and net south-trending coastwise transport components on a wind-dominated shelf. Coastwise transport results in the net southward migration of both palimpsest sandy mud composing the ancestral Brazos-Colorado delta flank in the northern sector, and modern mud composing the central sector; these migrating sediments are encroaching southward onto immobile relict muddy sands composing the ancestral Rio Grande delta in the southern sector. In the proposed model, the suspension transport of modern silt-enriched mud derived mainly from coastal sources is the dominant dispersal mechanism. Net offshore transport is attributed both to diffusion, and to the advective ebb-tide discharge of turbid lagoonal-estuarine waters from coastal inlets. Net southward transport is attributed mainly to advection by seasonally residual coastwise drift currents reflecting a winter-dominated hydraulic regime. Frequent winter storms characterized by relatively high-speed northerly winds that accompany the passage of cold fronts appear to be dominant regional dispersal agents. ?? 1978.
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Wilbertz, Gregor; Sterzer, Philipp
2018-05-01
Alternating conscious visual perception of bistable stimuli is influenced by several factors. In order to understand the effect of negative valence, we tested the effect of two types of aversive conditioning on dominance durations in binocular rivalry. Participants received either aversive classical conditioning of the stimuli shown alone between rivalry blocks, or aversive percept conditioning of one of the two possible perceptual choices during rivalry. Both groups showed successful aversive conditioning according to skin conductance responses and affective valence ratings. However, while classical conditioning led to an immediate but short-lived increase in dominance durations of the conditioned stimulus, percept conditioning yielded no significant immediate effect but tended to decrease durations of the conditioned percept during extinction. These results show dissociable effects of value learning on perceptual inference in situations of perceptual conflict, depending on whether learning relates to the decision between conflicting perceptual choices or the sensory stimuli per se. Copyright © 2018 Elsevier Inc. All rights reserved.
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Lin, Kuei -Han; Liao, Ben -Yang; Chang, Hao -Wei; ...
2015-12-03
Microbial diversity and community structures in acidic hot springs have been characterized by 16S rRNA gene-based diversity surveys. However, our understanding regarding the interactions among microbes, or between microbes and environmental factors, remains limited. In the present study, a metagenomic approach, followed by bioinformatics analyses, were used to predict interactions within the microbial ecosystem in Shi-Huang-Ping (SHP), an acidic hot spring in northern Taiwan. Characterizing environmental parameters and potential metabolic pathways highlighted the importance of carbon assimilatory pathways. Four distinct carbon assimilatory pathways were identified in five dominant genera of bacteria. Of those dominant carbon fixers, Hydrogenobaculum bacteria outcompeted othermore » carbon assimilators and dominated the SHP, presumably due to their ability to metabolize hydrogen and to withstand an anaerobic environment with fluctuating temperatures. Furthermore, most dominant microbes were capable of metabolizing inorganic sulfur-related compounds (abundant in SHP). However, Acidithiobacillus ferrooxidans was the only species among key rare microbes with the capability to fix nitrogen, suggesting a key role in nitrogen cycling. In addition to potential metabolic interactions, based on the 16S rRNAs gene sequence of Nanoarchaeum-related and its potential host Ignicoccus-related archaea, as well as sequences of viruses and CRISPR arrays, we inferred that there were complex microbe-microbe interactions. In conclusion, our study provided evidence that there were numerous microbe-microbe and microbe-environment interactions within the microbial community in an acidic hot spring. We proposed that Hydrogenobaculum bacteria were the dominant microbial genus, as they were able to metabolize hydrogen, assimilate carbon and live in an anaerobic environment with fluctuating temperatures.« less
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Lin, Kuei -Han; Liao, Ben -Yang; Chang, Hao -Wei
Microbial diversity and community structures in acidic hot springs have been characterized by 16S rRNA gene-based diversity surveys. However, our understanding regarding the interactions among microbes, or between microbes and environmental factors, remains limited. In the present study, a metagenomic approach, followed by bioinformatics analyses, were used to predict interactions within the microbial ecosystem in Shi-Huang-Ping (SHP), an acidic hot spring in northern Taiwan. Characterizing environmental parameters and potential metabolic pathways highlighted the importance of carbon assimilatory pathways. Four distinct carbon assimilatory pathways were identified in five dominant genera of bacteria. Of those dominant carbon fixers, Hydrogenobaculum bacteria outcompeted othermore » carbon assimilators and dominated the SHP, presumably due to their ability to metabolize hydrogen and to withstand an anaerobic environment with fluctuating temperatures. Furthermore, most dominant microbes were capable of metabolizing inorganic sulfur-related compounds (abundant in SHP). However, Acidithiobacillus ferrooxidans was the only species among key rare microbes with the capability to fix nitrogen, suggesting a key role in nitrogen cycling. In addition to potential metabolic interactions, based on the 16S rRNAs gene sequence of Nanoarchaeum-related and its potential host Ignicoccus-related archaea, as well as sequences of viruses and CRISPR arrays, we inferred that there were complex microbe-microbe interactions. In conclusion, our study provided evidence that there were numerous microbe-microbe and microbe-environment interactions within the microbial community in an acidic hot spring. We proposed that Hydrogenobaculum bacteria were the dominant microbial genus, as they were able to metabolize hydrogen, assimilate carbon and live in an anaerobic environment with fluctuating temperatures.« less
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Maeda, Yumi; Kettner, Norman; Kim, Jieun; Kim, Hyungjun; Cina, Stephen; Malatesta, Cristina; Gerber, Jessica; McManus, Claire; Libby, Alexandra; Mezzacappa, Pia; Mawla, Ishtiaq; Morse, Leslie R; Audette, Joseph; Napadow, Vitaly
2016-05-01
Paresthesia-dominant and pain-dominant subgroups have been noted in carpal tunnel syndrome (CTS), a peripheral neuropathic disorder characterized by altered primary somatosensory/motor (S1/M1) physiology. We aimed to investigate whether brain morphometry dissociates these subgroups. Subjects with CTS were evaluated with nerve conduction studies, whereas symptom severity ratings were used to allocate subjects into paresthesia-dominant (CTS-paresthesia), pain-dominant (CTS-pain), and pain/paresthesia nondominant (not included in further analysis) subgroups. Structural brain magnetic resonance imaging data were acquired at 3T using a multiecho MPRAGE T1-weighted pulse sequence, and gray matter cortical thickness was calculated across the entire brain using validated, automated methods. CTS-paresthesia subjects demonstrated reduced median sensory nerve conduction velocity (P = 0.05) compared with CTS-pain subjects. In addition, cortical thickness in precentral and postcentral gyri (S1/M1 hand area) contralateral to the more affected hand was significantly reduced in CTS-paresthesia subgroup compared with CTS-pain subgroup. Moreover, in CTS-paresthesia subjects, precentral cortical thickness was negatively correlated with paresthesia severity (r(34) = -0.40, P = 0.016) and positively correlated with median nerve sensory velocity (r(36) = 0.51, P = 0.001), but not with pain severity. Conversely, in CTS-pain subjects, contralesional S1 (r(9) = 0.62, P = 0.042) and M1 (r(9) = 0.61, P = 0.046) cortical thickness were correlated with pain severity, but not median nerve velocity or paresthesia severity. This double dissociation in somatotopically specific S1/M1 areas suggests a neuroanatomical substrate for symptom-based CTS subgroups. Such fine-grained subgrouping of CTS may lead to improved personalized therapeutic approaches, based on superior characterization of the linkage between peripheral and central neuroplasticity.
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Genetics Home Reference: autosomal dominant congenital stationary night blindness
... collapse boxes. Description Autosomal dominant congenital stationary night blindness is a disorder of the retina , which is the specialized tissue at the back of the eye that detects light and color. People with this condition typically have difficulty seeing ...
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Genome-wide characterization of differential transcript usage in Arabidopsis thaliana.
Vaneechoutte, Dries; Estrada, April R; Lin, Ying-Chen; Loraine, Ann E; Vandepoele, Klaas
2017-12-01
Alternative splicing and the usage of alternate transcription start- or stop sites allows a single gene to produce multiple transcript isoforms. Most plant genes express certain isoforms at a significantly higher level than others, but under specific conditions this expression dominance can change, resulting in a different set of dominant isoforms. These events of differential transcript usage (DTU) have been observed for thousands of Arabidopsis thaliana, Zea mays and Vitis vinifera genes, and have been linked to development and stress response. However, neither the characteristics of these genes, nor the implications of DTU on their protein coding sequences or functions, are currently well understood. Here we present a dataset of isoform dominance and DTU for all genes in the AtRTD2 reference transcriptome based on a protocol that was benchmarked on simulated data and validated through comparison with a published reverse transciptase-polymerase chain reaction panel. We report DTU events for 8148 genes across 206 public RNA-Seq samples, and find that protein sequences are affected in 22% of the cases. The observed DTU events show high consistency across replicates, and reveal reproducible patterns in response to treatment and development. We also demonstrate that genes with different evolutionary ages, expression breadths and functions show large differences in the frequency at which they undergo DTU, and in the effect that these events have on their protein sequences. Finally, we showcase how the generated dataset can be used to explore DTU events for genes of interest or to find genes with specific DTU in samples of interest. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.
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Wang, Shu'an; Wang, Peng; Gao, Lulu; Yang, Rutong; Li, Linfang; Zhang, Enliang; Wang, Qing; Li, Ya; Yin, Zengfang
2017-05-01
Crape myrtle (Lagerstroemia indica) is a woody ornamental plant popularly grown because of its long-lasting, midsummer blooms and beautiful colors. The GL1 dominant mutant is the first chlorophyll-less mutant identified in crape myrtle. It was obtained from a natural yellow leaf bud mutation. We previously revealed that leaf color of the GL1 mutant is affected by light intensity. However, the mechanism of the GL1 mutant on light response remained unclear. The acclimation response of mutant and wild-type (WT) plants was assessed in a time series after transferring from low light (LL) to high light (HL) by analyzing chlorophyll synthesis precursor content, photosynthetic performance, and gene expression. In LL conditions, coproporphyrinogen III (Coprogen III) content had the greatest amount of accumulation in the mutant compared with WT, increasing by 100%. This suggested that the yellow leaf phenotype of the GL1 dominant mutant might be caused by disruption of coproporphyrinogen III oxidase (CPO) biosynthesis. Furthermore, the candidate gene, oxygen-independent CPO (HEMN), might only affect expression of upstream genes involved in chlorophyll metabolism in the mutant. Moreover, two genes, photosystem II (PSII) 10 kDa protein (psbR) and chlorophyll a/b binding protein gene (CAB1), had decreased mRNA levels in the GL1 mutant within the first 96 h following LL/HL transfer compared with the WT. Hierarchical clustering revealed that these two genes shared a similar expression trend as the oxygen-dependent CPO (HEMF). These findings provide evidence that GL1 is highly coordinated with PSII stability and chloroplast biogenesis.
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Late Quaternary glaciation history of monsoon-dominated Dingad basin, central Himalaya, India
NASA Astrophysics Data System (ADS)
Shukla, Tanuj; Mehta, Manish; Jaiswal, Manoj K.; Srivastava, Pradeep; Dobhal, D. P.; Nainwal, H. C.; Singh, Atul K.
2018-02-01
The study presents the Late Quaternary glaciation history of monsoon-dominated Dokriani Glacier valley, Dingad basin, central Himalaya, India. The basin is tested for the mechanism of landforms preservation in high relief and abundant precipitation regimes of the Higher Himalaya. Field geomorphology and remote sensing data, supported by Optical Stimulated Luminescence (OSL) dating enabled identification of five major glacial events of decreasing magnitude. The oldest glacial stage, Dokriani Glacial Stage I (DGS-I), extended down to ∼8 km (2883 m asl) from present-day snout (3965 m asl) followed by other four glaciations events viz. DGS-II, DGS-III, DGS-IV and DGS-V terminating at ∼3211, 3445, 3648 and ∼3733 m asl respectively. The DGS-I glaciation (∼25-∼22 ka BP) occurred during early Marine Isotope Stage (MIS) -2, characterized as Last Glacial Maximum (LGM) extension of the valley. Similarly, DGS-II stage (∼14-∼11 ka BP) represents the global cool and dry Older Dryas and Younger Dryas event glaciation. The DGS-III glaciation (∼8 ka BP) coincides with early Holocene 8.2 ka cooling event, the DGS-IV glaciations (∼4-3.7 ka BP) corresponds to 4.2 ka cool and drier event, DGS-V (∼2.7-∼1 ka BP) represents the cool and moist late Holocene glacial advancement of the valley. This study suggests that the Dokriani Glacier valley responded to the global lowering of temperature and variable precipitation conditions. This study also highlights the close correlation between the monsoon-dominated valley glaciations and Northern Hemisphere cooling events influenced by North Atlantic climate.
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Pereira, Gilberto Vinícius de Melo; Miguel, Maria Gabriela da Cruz Pedrozo; Ramos, Cíntia Lacerda; Schwan, Rosane Freitas
2012-08-01
Spontaneous cocoa bean fermentations performed under bench- and pilot-scale conditions were studied using an integrated microbiological approach with culture-dependent and culture-independent techniques, as well as analyses of target metabolites from both cocoa pulp and cotyledons. Both fermentation ecosystems reached equilibrium through a two-phase process, starting with the simultaneous growth of the yeasts (with Saccharomyces cerevisiae as the dominant species) and lactic acid bacteria (LAB) (Lactobacillus fermentum and Lactobacillus plantarum were the dominant species), which were gradually replaced by the acetic acid bacteria (AAB) (Acetobacter tropicalis was the dominant species). In both processes, a sequence of substrate consumption (sucrose, glucose, fructose, and citric acid) and metabolite production kinetics (ethanol, lactic acid, and acetic acid) similar to that of previous, larger-scale fermentation experiments was observed. The technological potential of yeast, LAB, and AAB isolates was evaluated using a polyphasic study that included the measurement of stress-tolerant growth and fermentation kinetic parameters in cocoa pulp media. Overall, strains L. fermentum UFLA CHBE8.12 (citric acid fermenting, lactic acid producing, and tolerant to heat, acid, lactic acid, and ethanol), S. cerevisiae UFLA CHYC7.04 (ethanol producing and tolerant to acid, heat, and ethanol), and Acetobacter tropicalis UFLA CHBE16.01 (ethanol and lactic acid oxidizing, acetic acid producing, and tolerant to acid, heat, acetic acid, and ethanol) were selected to form a cocktail starter culture that should lead to better-controlled and more-reliable cocoa bean fermentation processes.
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Episodic soil succession on basaltic lava fields in a cool, dry environment
Vaughan, K.L.; McDaniel, P.A.; Phillips, W.M.
2011-01-01
Holocene- to late Pleistocene-aged lava flows at Craters of the Moon National Monument and Preserve provide an ideal setting to examine the early stages of soil formation under cool, dry conditions. Transects were used to characterize the amount and nature of soil cover on across basaltic lava flows ranging in age from 2.1 to 18.4 ka. Results indicate that on flows <13 ka, very shallow organic soils (Folists in Soil Taxonomy) are the dominant soil type, providing an areal coverage of up to ∼25%. On flows ≥13.9 ka, deeper mineral soils including Entisols, Aridisols, and Mollisols become dominant and the areal extent increases to ≥95% on flows older than 18.4 ka. These data suggest there are two distinct pedogenic pathways associated with lava flows of the region. The first pathway is illustrated by the younger flows, where Folists dominate. In the absence of a major source of loess, relatively little mineral material accumulates and soils provide only minor coverage of the lava flows. Our results indicate that this pathway of soil development has not changed appreciably over the past ∼10 ka. The second pedogenic pathway is illustrated by the flows older than 13.9 ka. These flows have been subject to deposition of large quantities of loess during and after the last regional glaciation, resulting in almost complete coverage. Subsequent pedogenesis has given rise to Aridisols and Mollisols with calcic and cambic horizons and mollic epipedons. This research highlights the importance of regional climate change on the evolution of Craters of the Moon soilscapes.
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Pereira, Gilberto Vinícius de Melo; Miguel, Maria Gabriela da Cruz Pedrozo; Ramos, Cíntia Lacerda
2012-01-01
Spontaneous cocoa bean fermentations performed under bench- and pilot-scale conditions were studied using an integrated microbiological approach with culture-dependent and culture-independent techniques, as well as analyses of target metabolites from both cocoa pulp and cotyledons. Both fermentation ecosystems reached equilibrium through a two-phase process, starting with the simultaneous growth of the yeasts (with Saccharomyces cerevisiae as the dominant species) and lactic acid bacteria (LAB) (Lactobacillus fermentum and Lactobacillus plantarum were the dominant species), which were gradually replaced by the acetic acid bacteria (AAB) (Acetobacter tropicalis was the dominant species). In both processes, a sequence of substrate consumption (sucrose, glucose, fructose, and citric acid) and metabolite production kinetics (ethanol, lactic acid, and acetic acid) similar to that of previous, larger-scale fermentation experiments was observed. The technological potential of yeast, LAB, and AAB isolates was evaluated using a polyphasic study that included the measurement of stress-tolerant growth and fermentation kinetic parameters in cocoa pulp media. Overall, strains L. fermentum UFLA CHBE8.12 (citric acid fermenting, lactic acid producing, and tolerant to heat, acid, lactic acid, and ethanol), S. cerevisiae UFLA CHYC7.04 (ethanol producing and tolerant to acid, heat, and ethanol), and Acetobacter tropicalis UFLA CHBE16.01 (ethanol and lactic acid oxidizing, acetic acid producing, and tolerant to acid, heat, acetic acid, and ethanol) were selected to form a cocktail starter culture that should lead to better-controlled and more-reliable cocoa bean fermentation processes. PMID:22636007
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Steenackers, Ellen; Yorgan, Timur A.; Hermans, Christophe; Boudin, Eveline; Waterval, Jérôme J.; Jansen, Ineke D. C.; Aydemir, Tolunay Beker; Kamerling, Niels; Plumeyer, Christine; D’Haese, Patrick C.; Everts, Vincent; Lammens, Martin; Mortier, Geert; Cousins, Robert J.; Schinke, Thorsten; Stokroos, Robert J.; Manni, Johannes J.; Van Hul, Wim
2018-01-01
Hyperostosis Cranialis Interna (HCI) is a rare bone disorder characterized by progressive intracranial bone overgrowth at the skull. Here we identified by whole-exome sequencing a dominant mutation (L441R) in SLC39A14 (ZIP14). We show that L441R ZIP14 is no longer trafficked towards the plasma membrane and excessively accumulates intracellular zinc, resulting in hyper-activation of cAMP-CREB and NFAT signaling. Conditional knock-in mice overexpressing L438R Zip14 in osteoblasts have a severe skeletal phenotype marked by a drastic increase in cortical thickness due to an enhanced endosteal bone formation, resembling the underlying pathology in HCI patients. Remarkably, L438R Zip14 also generates an osteoporotic trabecular bone phenotype. The effects of osteoblastic overexpression of L438R Zip14 therefore mimic the disparate actions of estrogen on cortical and trabecular bone through osteoblasts. Collectively, we reveal ZIP14 as a novel regulator of bone homeostasis, and that manipulating ZIP14 might be a therapeutic strategy for bone diseases. PMID:29621230
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NASA Astrophysics Data System (ADS)
Whiteside, J. H.; Lindström, S.; Irmis, R. B.; Glasspool, I.; Schaller, M. F.; Dunlavey, M.; Nesbitt, S. J.; Smith, N. D.; Turner, A. H.
2015-12-01
The rarity and species-poor nature of early dinosaurs and their relatives at low paleolatitudes persisted for 30 million years after their origin and 10-15 million years after they became abundant and speciose at higher latitudes. New environmental reconstructions from stable carbon isotope ratios of preserved organic matter (δ13Corg), atmospheric pCO2 data based on the δ13C of soil carbonate, palynological, and wildfire data from charcoal from early dinosaur-bearing strata at low paleolatitudes in western North America show that variations in δ13Corg and palynomorph ecotypes are tightly correlated, displaying large and high-frequency excursions. These variations occurred within an environment characterized by elevated and increasing atmospheric pCO2, pervasive wildfires, and rapidly fluctuating extreme climatic conditions. Whereas pseudosuchian archosaur-dominated communities were able to persist in these same regions until the end-Triassic, the large-bodied, fast-growing tachymetabolic dinosaurian herbivores were not. We hypothesize that the greater resources required by the herbivores made it difficult from them to adapt to the unstable conditions at low paleolatitudes in the Late Triassic.
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Stochastic generation of MAC waves and implications for convection in Earth's core
NASA Astrophysics Data System (ADS)
Buffett, Bruce; Knezek, Nicholas
2018-03-01
Convection in Earth's core can sustain magnetic-Archemedes-Coriolis (MAC) waves through a variety of mechanisms. Buoyancy and Lorentz forces are viable sources for wave motion, together with the effects of magnetic induction. We develop a quantitative description for zonal MAC waves and assess the source mechanisms using a numerical dynamo model. The largest sources at conditions accessible to the dynamo model are due to buoyancy forces and magnetic induction. However, when these sources are extrapolated to conditions expected in Earth's core, the Lorentz force emerges as the dominant generation mechanism. This source is expected to produce wave velocities of roughly 2 km yr-1 when the internal magnetic field is characterized by a dimensionless Elsasser number of roughly Λ ≈ 10 and the root-mean-square convective velocity defines a magnetic Reynolds number of Rm ≈ 103. Our preferred model has a radially varying stratification and a constant (radial) background magnetic field. It predicts a broad power spectrum for the wave velocity with most power distributed across periods from 30 to 100 yr.
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Experimental study of the minority-carrier transport at the polysilicon-monosilicon interface
NASA Astrophysics Data System (ADS)
Neugroschel, A.; Arienzo, M.; Isaac, R. D.; Komem, Y.
1985-04-01
This paper presents the results of an experimental study designed to explore both qualitatively and quantitatively the mechanism of the improved current gain in bipolar transistors with polysilicon emitter contacts. Polysilicon contacts were deposited and heat treated at different conditions. The electrical properties were measured using p-n junction test structures that are much more sensitive to the contact properties than are bipolar transistors. A simple phenomenological model was used to correlate the structural properties with electrical measurements. Possible transport mechanisms are examined and estimates are made about upper bounds on transport parameters in the principal regions of the devices. The main conclusion of this study is that the minority-carrier transport in the polycrystalline silicon is dominated by a highly disordered layer at the polysilicon-monosilicon interface characterized by very low minority-carrier mobility. The effective recombination velocity at the n(+) polysilicon-n(+) monosilicon interface was found to be a strong function of fabrication conditions. The results indicate that the recombination velocity can be much smaller than 10,000 cm/s.
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In situ observation of shear-driven amorphization in silicon crystals.
He, Yang; Zhong, Li; Fan, Feifei; Wang, Chongmin; Zhu, Ting; Mao, Scott X
2016-10-01
Amorphous materials are used for both structural and functional applications. An amorphous solid usually forms under driven conditions such as melt quenching, irradiation, shock loading or severe mechanical deformation. Such extreme conditions impose significant challenges on the direct observation of the amorphization process. Various experimental techniques have been used to detect how the amorphous phases form, including synchrotron X-ray diffraction, transmission electron microscopy (TEM) and Raman spectroscopy, but a dynamic, atomistic characterization has remained elusive. Here, by using in situ high-resolution TEM (HRTEM), we show the dynamic amorphization process in silicon nanocrystals during mechanical straining on the atomic scale. We find that shear-driven amorphization occurs in a dominant shear band starting with the diamond-cubic (dc) to diamond-hexagonal (dh) phase transition and then proceeds by dislocation nucleation and accumulation in the newly formed dh-Si phase. This process leads to the formation of an amorphous Si (a-Si) band, embedded with dh-Si nanodomains. The amorphization of dc-Si via an intermediate dh-Si phase is a previously unknown pathway of solid-state amorphization.
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Emissions from open burning of simulated military waste from forward operating bases.
Aurell, Johanna; Gullett, Brian K; Yamamoto, Dirk
2012-10-16
Emissions from open burning of simulated military waste from forward operating bases (FOBs) were extensively characterized as an initial step in assessing potential inhalation exposure of FOB personnel and future disposal alternatives. Emissions from two different burning scenarios, so-called "burn piles/pits" and an air curtain burner/"burn box", were compared using simulated FOB waste from municipal and commercial sources. A comprehensive array of emissions was quantified, including CO(2), PM(2.5), volatile organic compounds (VOCs), polyaromatic hydrocarbons (PAHs), polychlorinated dibenzodioxins and -furans (PCDDs/PCDFs), polybrominated dibenzodioxins and -furans (PBDDs/PBDFs), and metals. In general, smoldering conditions in the burn box and the burn pile led to similar emissions. However, when the burn box underwent periodic waste charging to maintain sustained combustion, PM(2.5), VOCs, and PAH emissions dropped considerably compared to smoldering conditions and the overall burn pile results. The PCDD/PCDF and PBDD/PBDF emission factors for the burn piles were 50 times higher than those from the burn box likely due to the dominance of smoldering combustion in the burn piles.
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Population ecology of free-roaming cats and interference competition by coyotes in urban parks.
Gehrt, Stanley D; Wilson, Evan C; Brown, Justin L; Anchor, Chris
2013-01-01
Free-roaming cats are a common element of urban landscapes worldwide, often causing controversy regarding their impacts on ecological systems and public health. We monitored cats within natural habitat fragments in the Chicago metropolitan area to characterize population demographics, disease prevalence, movement patterns and habitat selection, in addition to assessing the possible influence of coyotes on cats. The population was dominated by adults of both sexes, and 24% of adults were in reproductive condition. Annual survival rate was relatively high (S=0.70, SE=0.10), with vehicles and predation the primary causes of death. Size of annual home range varied by sex, but not reproductive status or body weight. We observed partitioning of the landscape by cats and coyotes, with little interspecific overlap between core areas of activity. Coyotes selected for natural habitats whereas cats selected for developed areas such as residences. Free-roaming cats were in better condition than we predicted, but their use of natural habitat fragments, and presumably their ecological impact, appeared to be limited by coyotes through intraguild competition.
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Excess surface area in bioelectrochemical systems causes ion transport limitations.
Harrington, Timothy D; Babauta, Jerome T; Davenport, Emily K; Renslow, Ryan S; Beyenal, Haluk
2015-05-01
We investigated ion transport limitations on 3D graphite felt electrodes by growing Geobacter sulfurreducens biofilms with advection to eliminate external mass transfer limitations. We characterized ion transport limitations by: (i) showing that serially increasing NaCl concentration up to 200 mM increased current linearly up to a total of +273% vs. 0 mM NaCl under advective conditions; (ii) growing the biofilm with a starting concentration of 200 mM NaCl, which led to a maximum current increase of 400% vs. current generation without NaCl, and (iii) showing that un-colonized surface area remained even after steady-state current was reached. After accounting for iR effects, we confirmed that the excess surface area existed despite a non-zero overpotential. The fact that the biofilm was constrained from colonizing and producing further current under these conditions confirmed the biofilms under study here were ion transport-limited. Our work demonstrates that the use of high surface area electrodes may not increase current density when the system design allows ion transport limitations to become dominant. © 2014 Wiley Periodicals, Inc.
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Parturition to resumption of ovarian cyclicity: comparative aspects of beef and dairy cows.
Crowe, M A; Diskin, M G; Williams, E J
2014-05-01
There is a variable anoestrous period following parturition in the cow. Follicular growth generally resumes within 7 to 10 days in the majority of cows associated with a transient FSH rise that occurs within 3 to 5 days of parturition. Dairy cows that are not nutritionally stressed generally ovulate their first postpartum dominant follicle (~15 days), whereas beef suckler cows in good body condition normally have a mean of 3.2±0.2 dominant follicles (~30 days) to first ovulation; moreover, beef cows in poor body condition have a mean of 10.6±1.2 dominant follicles (~70 to 100 days) to first ovulation. The lack of ovulation of dominant follicles during the postpartum period is associated with infrequent LH pulses, with both maternal-offspring bonding and low body condition score (BCS) at calving being implicated as the predominant causes of delayed resumption of cyclicity in nursed beef cows. In dairy cows, the normal pattern of early resumption of ovulation may be delayed in high-yielding Holstein type cows generally owing to the effects of severe negative energy balance, dystocia, retained placental membranes and uterine infections. First ovulation, in both dairy and beef cows, is generally silent (i.e., no behavioural oestrus) and followed by a short inter-ovulatory interval (>70%). The key to optimizing the resumption of ovulation in both beef and dairy cows is appropriate pre-calving nutrition and management so that cows calve down in optimal body condition (BCS; 2.75 to 3.0) with postpartum body condition loss restricted to <0.5 BCS units.
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NASA Astrophysics Data System (ADS)
Osterberg, Erich C.; Mayewski, Paul A.; Fisher, David A.; Kreutz, Karl J.; Maasch, Kirk A.; Sneed, Sharon B.; Kelsey, Eric
2014-10-01
Continuous, high-resolution paleoclimate records from the North Pacific region spanning the past 1500 years are rare; and the behavior of the Aleutian Low (ALow) pressure center, the dominant climatological feature in the Gulf of Alaska, remains poorly constrained. Here we present a continuous, 1500 year long, calibrated proxy record for the strength of the wintertime (December-March) ALow from the Mount Logan summit (PR Col; 5200 m asl) ice core soluble sodium time series. We show that ice core sodium concentrations are statistically correlated with North Pacific sea level pressure and zonal wind speed. Our ALow proxy record reveals a weak ALow from circa 900-1300 A.D. and 1575-1675 A.D., and a comparatively stronger ALow from circa 500-900 A.D., 1300-1575 A.D., and 1675 A.D. to present. The Mount Logan ALow proxy record shows strong similarities with tropical paleoclimate proxy records sensitive to the El Niño-Southern Oscillation and is consistent with the hypothesis that the Medieval Climate Anomaly was characterized by more persistent La Niña-like conditions while the Little Ice Age was characterized by at least two intervals of more persistent El Niño-like conditions. The Mount Logan ALow proxy record is significantly (p < 0.05) correlated and coherent with solar irradiance proxy records over various time scales, with stronger solar irradiance generally associated with a weaker ALow and La Niña-like tropical conditions. However, a step-like increase in ALow strength during the Dalton solar minimum circa 1820 is associated with enhanced Walker circulation. Furthermore, rising CO2 forcing or internal variability may be masking the twentieth century rise in solar irradiance.
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Steinberg, Lisa M; Regan, John M
2008-11-01
Methanogens play a critical role in the decomposition of organics under anaerobic conditions. The methanogenic consortia in saturated wetland soils are often subjected to large temperature fluctuations and acidic conditions, imposing a selective pressure for psychro- and acidotolerant community members; however, methanogenic communities in engineered digesters are frequently maintained within a narrow range of mesophilic and circumneutral conditions to retain system stability. To investigate the hypothesis that these two disparate environments have distinct methanogenic communities, the methanogens in an oligotrophic acidic fen and a mesophilic anaerobic digester treating municipal wastewater sludge were characterized by creating clone libraries for the 16S rRNA and methyl coenzyme M reductase alpha subunit (mcrA) genes. A quantitative framework was developed to assess the differences between these two communities by calculating the average sequence similarity for 16S rRNA genes and mcrA within a genus and family using sequences of isolated and characterized methanogens within the approved methanogen taxonomy. The average sequence similarities for 16S rRNA genes within a genus and family were 96.0 and 93.5%, respectively, and the average sequence similarities for mcrA within a genus and family were 88.9 and 79%, respectively. The clone libraries of the bog and digester environments showed no overlap at the species level and almost no overlap at the family level. Both libraries were dominated by clones related to uncultured methanogen groups within the Methanomicrobiales, although members of the Methanosarcinales and Methanobacteriales were also found in both libraries. Diversity indices for the 16S rRNA gene library of the bog and both mcrA libraries were similar, but these indices indicated much lower diversity in the 16S digester library than in the other three libraries.
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[Gorlin-Goltz Syndrome: Diagnosis and Treatment Options].
Mendes-Abreu, João; Pinto-Gouveia, Miguel; Tavares-Ferreira, Cátia; Brinca, Ana; Vieira, Ricardo
2017-05-31
The Gorlin-Goltz syndrome is a rare autosomal dominant hereditary condition, with complete penetrance and variable expressivity. Characterized by the appearance of multiple basaliomas, and often the development of keratocyst, it can also express itself by the presence of palmar/plantar depressions, calcification of brain sickle, and skeletal birth defects, although less frequently. This article presents two cases involving direct relatives, referred after the identification of several basaliomas and jaw cysts. After establishing the diagnosis, given the identification of three major criteria, the treatment consisted in the excision of the lesions followed, in one case, with vismodegib treatment resulting in complete remission. Gorlin-Goltz syndrome is therefore a multidisciplinary challenge, whose variable morbidity and high risk of recurrence make treatment and surveillance critical. However, new molecular targeted therapies have brought a new hope in treating these patients.
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A unique TBX5 microdeletion with microinsertion detected in patient with Holt-Oram syndrome.
Morine, Mikio; Kohmoto, Tomohiro; Masuda, Kiyoshi; Inagaki, Hidehito; Watanabe, Miki; Naruto, Takuya; Kurahashi, Hiroki; Maeda, Kazuhisa; Imoto, Issei
2015-12-01
Holt-Oram syndrome (HOS) is an autosomal dominant condition characterized by upper limb and congenital heart defects and caused by numerous germline mutations of TBX5 producing preterminal stop codons. Here, we report on a novel and unusual heterozygous TBX5 microdeletion with microinsertion (microindel) mutation (c.627delinsGTGACTCAGGAAACGCTTTCCTGA), which is predicted to synthesize a truncated TBX5 protein, detected in a sporadic patient with clinical features of HOS prenatally diagnosed by ultrasonography. This uncommon and relatively large inserted sequence contains sequences derived from nearby but not adjacent templates on both sense and antisense strands, suggesting two possible models, which require no repeat sequences, causing this complex microindel through the bypass of large DNA adducts via an error-prone DNA polymerase-mediated translesion synthesis. © 2015 Wiley Periodicals, Inc.
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NASA Astrophysics Data System (ADS)
Crist, Ryan; Cal, Raul Bayoan; Ali, Naseem; Rockel, Stanislav; Peinke, Joachim; Hoelling, Michael
2017-11-01
The velocity-intermittency quadrant method is used to characterize the flow structure of the wake flow in the boundary layer of a wind turbine array. Multifractal framework presents the intermittency as a pointwise Hölder exponent. A 3×3 wind turbine array tested experimentally provided a velocity signal at a 21×9 downstream location, measured via hot-wire anemometry. The results show a negative correlation between the velocity and the intermittency at the hub height and bottom tip, whereas the top tip regions show a positive correlation. Sweep and ejection based on the velocity and intermittency are dominant downstream from the rotor. The pointwise results reflect large-scale organization of the flow and velocity-intermittency events corresponding to a foreshortened recirculation region near the hub height and the bottom tip.
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Takai, Ken; Hirayama, Hisako; Sakihama, Yuri; Inagaki, Fumio; Yamato, Yu; Horikoshi, Koki
2002-01-01
Culture-dependent and -independent techniques were combined to characterize the physiological properties and the ecological impacts of culture-resistant phylotypes of thermophiles within the order Aquificales from a subsurface hot aquifer of a Japanese gold mine. Thermophilic bacteria phylogenetically associated with previously uncultured phylotypes of Aquificales were successfully isolated. 16S ribosomal DNA clone analysis of the entire microbial DNA assemblage and fluorescence in situ whole-cell hybridization analysis indicated that the isolates dominated the microbial population in the subsurface aquifer. The isolates were facultatively anaerobic, hydrogen- or sulfur/thiosulfate-oxidizing, thermophilic chemolithoautotrophs utilizing molecular oxygen, nitrate, ferric iron, arsenate, selenate, and selenite as electron acceptors. Their versatile energy-generating systems may reflect the geochemical conditions of their habitat in the geothermally active subsurface gold mine. PMID:12039766
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Growth and characterization of molecular beam epitaxial GaAs layers on porous silicon
NASA Technical Reports Server (NTRS)
Lin, T. L.; Liu, J. K.; Sadwick, L.; Wang, K. L.; Kao, Y. C.
1987-01-01
GaAs layers have been grown on porous silicon (PS) substrates with good crystallinity by molecular beam epitaxy. In spite of the surface irregularity of PS substrates, no surface morphology deterioration was observed on epitaxial GaAs overlayers. A 10-percent Rutherford backscattering spectroscopy minimum channeling yield for GaAs-on-PS layers as compared to 16 percent for GaAs-on-Si layers grown under the same condition indicates a possible improvement of crystallinity when GaAs is grown on PS. Transmission electron microscopy reveals that the dominant defects in the GaAs-on-PS layers are microtwins and stacking faults, which originate from the GaAs/PS interface. GaAs is found to penetrate into the PS layers. n-type GaAs/p-type PS heterojunction diodes were fabricated with good rectifying characteristics.
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Influence of gravity on inertial particle clustering in turbulence
NASA Astrophysics Data System (ADS)
Lu, J.; Nordsiek, H.; Saw, E. W.; Fugal, J. P.; Shaw, R. A.
2008-11-01
We report results from experiments aimed at studying inertial particles in homogeneous, isotropic turbulence, under the influence of gravitational settling. Conditions are selected to investigate the transition from negligible role of gravity to gravitationally dominated, as is expected to occur in atmospheric clouds. We measure droplet clustering, relative velocities, and the distribution of collision angles in this range. The experiments are carried out in a laboratory chamber with nearly homogeneous, isotropic turbulence. The turbulence is characterized using LDV and 2-frame holographic particle tracking velocimetry. We seed the flow with particles of various Stokes and Froude numbers and use digital holography to obtain 3D particle positions and velocities. From particle positions, we investigate the impact of gravity on inertial clustering through the calculation of the radial distribution function and we compare to computational results and other recent experiments.
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Microbial ecology of hot desert edaphic systems.
Makhalanyane, Thulani P; Valverde, Angel; Gunnigle, Eoin; Frossard, Aline; Ramond, Jean-Baptiste; Cowan, Don A
2015-03-01
A significant proportion of the Earth's surface is desert or in the process of desertification. The extreme environmental conditions that characterize these areas result in a surface that is essentially barren, with a limited range of higher plants and animals. Microbial communities are probably the dominant drivers of these systems, mediating key ecosystem processes. In this review, we examine the microbial communities of hot desert terrestrial biotopes (including soils, cryptic and refuge niches and plant-root-associated microbes) and the processes that govern their assembly. We also assess the possible effects of global climate change on hot desert microbial communities and the resulting feedback mechanisms. We conclude by discussing current gaps in our understanding of the microbiology of hot deserts and suggest fruitful avenues for future research. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.
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Kleiman, Susan C; Glenny, Elaine M; Bulik-Sullivan, Emily C; Huh, Eun Young; Tsilimigras, Matthew C B; Fodor, Anthony A; Bulik, Cynthia M; Carroll, Ian M
2017-09-01
Anorexia nervosa, a severe psychiatric illness, is associated with an intestinal microbial dysbiosis. Individual microbial signatures dominate in healthy samples, even over time and under controlled conditions, but whether microbial markers of the disorder overcome inter-individual variation during the acute stage of illness or renourishment is unknown. We characterized daily changes in the intestinal microbiota in three acutely ill patients with anorexia nervosa over the entire course of hospital-based renourishment and found significant, patient-specific changes in microbial composition and diversity. This preliminary case series suggests that even in a state of pathology, individual microbial signatures persist in accounting for the majority of intestinal microbial variation. Copyright © 2017 John Wiley & Sons, Ltd and Eating Disorders Association. Copyright © 2017 John Wiley & Sons, Ltd and Eating Disorders Association.
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Duniway, Michael C.; Palmquist, Emily C.; Miller, Mark E.
2015-01-01
Uncontrolled wildfire in arid and semiarid ecosystems has become an increasing concern in recent decades. Active rehabilitation of fire-affected areas is often quickly initiated to minimize long-term ecosystem damage. However, the complex soil-geomorphic-vegetation patterns and low and variable moisture conditions in these regions makes restoration challenging. To further inform these post-fire management decisions, we present results from 5 years of vegetation and sediment flux monitoring following the Milford Flat Fire in west-central Utah, USA. Our sampling design includes monitoring plots in areas not burned, areas burned but where no rehabilitation was attempted, and burned areas where various rehabilitation approaches were implemented. At each of the 25 plots, vegetation cover and composition data were collected annually, and wind-driven sediment flux was measured using passive dust traps. To evaluate effectiveness of post-fire rehabilitation treatments in establishing desired species and limiting dominance of undesired species, we analyzed the temporal response of individual species and functional groups as well as community-level multivariate responses. The warm and dry conditions that persisted for approximately 12 months post-treatment, coupled with the surface disturbing rehabilitation approaches used, resulted in near-surface dust fluxes several orders of magnitude higher in treated areas than in unburned or burned areas where no rehabilitation occurred. These dry conditions and high surface sediment flux limited the establishment of seeded species in rehabilitation areas for nearly 3 years. Post-fire rehabilitation did not limit dominance by invasive annual species of concern. Perennial species composition in the areas burned but not subject to post-fire rehabilitation was relatively similar to unburned throughout the study period. In contrast, the burned plots where rehabilitation was attempted were characterized by no (<3%) perennial cover or, in response to moister conditions, seeded forage species. These results suggest the post-fire rehabilitation efforts conducted in the lower elevation regions affected by the Milford Flat Fire were not generally successful. Though dry conditions are likely to blame for the lack of success, the low and variable precipitation characteristic of these regions suggest future post-fire rehabilitation decisions must assume that precipitation is going to be insufficient and plan rehabilitation efforts that are resilient to dry conditions.