The Importance of Splat Events to the Spatiotemporal Structure of Near-Bed Fluid Velocity and Bed Load Motion Over Bed Forms: Laboratory Experiments Downstream of a Backward Facing Step

NASA Astrophysics Data System (ADS)

Leary, K. C. P.; Schmeeckle, M. W.

2017-12-01

Flow separation/reattachment on the lee side of alluvial bed forms is known to produce a complex turbulence field, but the spatiotemporal details of the associated patterns of bed load sediment transported remain largely unknown. Here we report turbulence-resolving, simultaneous measurements of bed load motion and near-bed fluid velocity downstream of a backward facing step in a laboratory flume. Two synchronized high-speed video cameras simultaneously observed bed load motion and the motion of neutrally buoyant particles in a laser light sheet 6 mm above the bed at 250 frames/s downstream of a 3.8 cm backward facing step. Particle Imaging Velocimetry (PIV) and Acoustic Doppler Velocimetry (ADV) were used to characterize fluid turbulent patterns, while manual particle tracking techniques were used to characterize bed load transport. Octant analysis, conducted using ADV data, coupled with Markovian sequence probability analysis highlights differences in the flow near reattachment versus farther downstream. Near reattachment, three distinct flow patterns are apparent. Farther downstream we see the development of a dominant flow sequence. Localized, intermittent, high-magnitude transport events are more apparent near flow reattachment. These events are composed of streamwise and cross-stream fluxes of comparable magnitudes. Transport pattern and fluid velocity data are consistent with the existence of permeable "splat events," wherein a volume of fluid moves toward and impinges on the bed (sweep) causing a radial movement of fluid in all directions around the point of impingement (outward interaction). This is congruent with flow patterns, identified with octant analysis, proximal to flow reattachment.

Sediment transport patterns and climate change: the downstream Tuul River case study, Northern Mongolia.

NASA Astrophysics Data System (ADS)

Pietroń, Jan; Jarsjö, Jerker

2014-05-01

Ongoing changes in the Central Asian climate including increasing temperatures can influence the hydrological regimes of rivers and the waterborne transport of sediments. Changes in the latter, especially in combination with adverse human activities, may severely impact water quality and aquatic ecosystems. However, waterborne transport of sediments is a result of complex processes and varies considerably between, and even within, river systems. There is therefore a need to increase our general knowledge about sediment transport under changing climate conditions. The Tuul River, the case site of this study, is located in the upper part of the basin of the Selenga River that is the main tributary to Lake Baikal, a UNESCO World Heritage Site. Like many other rivers located in the steppes of Northern Mongolia, the Tuul River is characterized by a hydrological regime that is not disturbed by engineered structures such as reservoirs and dams. However, the water quality of the downstream Tuul River is increasingly affected by adverse human activities - including placer gold mining. The largest contribution to the annual river discharge occurs during the relatively warm period in May to August. Typically, there are numerous rainfall events during this period that cause considerable river flow peaks. Parallel work has furthermore shown that due to climate change, the daily variability of discharge and numbers of peak flow events in the Tuul River Basin has increased during the past 60 years. This trend is expected to continue. We here aim at increasing our understanding of future sediment transport patterns in the Tuul River, specifically considering the scenario that peak flow events may become more frequent due to climate change. We use a one-dimensional sediment transport model of the downstream reach of the river to simulate natural patterns of sediment transport for a recent hydrological year. In general, the results show that sediment transport varies considerably spatially and temporally. Peak flow events during the warm period contribute largely to the total annual transport of sediments and also to the erosion of stored bed material. These results suggest that if the number of peak flow events will increase further due to climate change, there will be a significant increase in the annual sediment load and consequently in the load of contaminants that are attached to the sediments, in particular downstream of mining sites. The present results are furthermore consistent with parallel studies on sediment transport and climate change showing that increased water discharges and frequencies of rainfall/flow events can lead to enhanced erosion processes. Furthermore, in addition to climate change effects, human activates can change sediment loads in rivers to even greater extent, as pointed out in several studies. Thus, several different challenges can be expected to face the management of Central Asian rivers such as Tuul and their ecosystems in the future.

Warnings and Human Response in the Oroville Dam Crisis, February 2017

NASA Astrophysics Data System (ADS)

Sorensen, J. H.; Mileti, D. S.; Needham, J. T.

2017-12-01

On February 7, 2017, erosion was detected in the primary spillway for Oroville Dam in northern California, causing an elevated concern for the safety of downstream communities. The situation seemed stable until heavy rains on February 11 resulted in the flow of water over the emergency spillway. On February 12, erosion below the emergency spillway was observed. At 4:21 PM on February 12, the Butte County Sheriff issued an evacuation order for "low levels of Oroville and downstream areas". Counties downstream followed with evacuation warnings. The purpose of this paper is to present preliminary results of research, conducted for the U.S. Army Corp of Engineers, on the Oroville event. This investigation is part of a research program designed to collect and analyze data on: 1) The timing of the decisions to order public evacuation warnings including the flow of information between engineers and geologist monitoring the hazard and local officials. 2) The method and timing of the dissemination of those warnings including the diffusion or warning by various communication channels. 3) The interpretation and response of the public to those warnings, including the timing of protective action decisions. The findings from these studies will be incorporated into risk assessment models used in assessing the impacts of dam and levee failures on a national basis.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maze, Grace M.

STREAM II is the aqueous transport model of the Weather Information Display (WIND) emergency response system at Savannah River Site. It is used to calculate transport in the event of a chemical or radiological spill into the waterways on the Savannah River Site. Improvements were made to the code (STREAM II V7) to include flow from all site tributaries to the Savannah River total flow and utilize a 4 digit year input. The predicted downstream concentrations using V7 were generally on the same order of magnitude as V6 with slightly lower concentrations and quicker arrival times when all onsite streammore » flows are contributing to the Savannah River flow. The downstream arrival time at the Savannah River Water Plant ranges from no change to an increase of 8.77%, with minimum changes typically in March/April and maximum changes typically in October/November. The downstream concentrations are generally no more than 15% lower using V7 with the maximum percent change in January through April and minimum changes in June/July.« less

Dynamic water behaviour due to one trapped air pocket in a laboratory pipeline apparatus

NASA Astrophysics Data System (ADS)

Bergant, A.; Karadžić, U.; Tijsseling, A.

2016-11-01

Trapped air pockets may cause severe operational problems in hydropower and water supply systems. A locally isolated air pocket creates distinct amplitude, shape and timing of pressure pulses. This paper investigates dynamic behaviour of a single trapped air pocket. The air pocket is incorporated as a boundary condition into the discrete gas cavity model (DGCM). DGCM allows small gas cavities to form at computational sections in the method of characteristics (MOC). The growth of the pocket and gas cavities is described by the water hammer compatibility equation(s), the continuity equation for the cavity volume, and the equation of state of an ideal gas. Isentropic behaviour is assumed for the trapped gas pocket and an isothermal bath for small gas cavities. Experimental investigations have been performed in a laboratory pipeline apparatus. The apparatus consists of an upstream end high-pressure tank, a horizontal steel pipeline (total length 55.37 m, inner diameter 18 mm), four valve units positioned along the pipeline including the end points, and a downstream end tank. A trapped air pocket is captured between two ball valves at the downstream end of the pipeline. The transient event is initiated by rapid opening of the upstream end valve; the downstream end valve stays closed during the event. Predicted and measured results for a few typical cases are compared and discussed.

Evidence of Asian carp spawning upstream of a key choke point in the Mississippi River

USGS Publications Warehouse

Larson, James H.; Knights, Brent C.; McCalla, S. Grace; Monroe, Emy; Tuttle-Lau, Maren T.; Chapman, Duane C.; George, Amy E.; Vallazza, Jon; Amberg, Jon J.

2017-01-01

Bighead Carp Hypophthalmichthys nobilis, Silver Carp H. molitrix, and Grass Carp Ctenopharyngodon idella(collectively termed “Asian carp”) were introduced into North America during the 1960s and 1970s and have become established in the lower Mississippi River basin. Previously published evidence for spawning of these species in the upper Mississippi River has been limited to an area just downstream of Dam 22 (near Saverton, Missouri). In 2013 and 2014, we sampled ichthyoplankton at 18 locations in the upper Mississippi River main stem from Dam 9 through Dam 19 and in four tributaries of the Mississippi River (Des Moines, Skunk, Iowa, and Wisconsin rivers). We identified eggs and larvae by using morphological techniques and then used genetic tools to confirm species identity. The spawning events we observed often included more than one species of Asian carp and in a few cases included eggs that must have been derived from more than one upstream spawning event. The upstream extent of genetically confirmed Grass Carp ichthyoplankton was the Wisconsin River, while Bighead Carp and Silver Carp ichthyoplankton were observed in Pool 16. In all these cases, ichthyoplankton likely drifted downstream for several hours prior to collection. Higher water velocities (and, to a lesser extent, higher temperatures) were associated with an increased likelihood of observing eggs or larvae, although the temperature range we encountered was mostly above 17°C. Several major spawning events were detected in 2013, but no major spawning events were observed in 2014. The area between Dam 15 and Dam 19 appears to be the upstream edge of spawning activity for both Silver Carp and Bighead Carp, suggesting that this area could be a focal point for management efforts designed to limit further upstream movement of these species..

The North Atlantic Waveguide and Downstream Impact Experiment (NAWDEX): First results

NASA Astrophysics Data System (ADS)

Craig, George; Schäfler, Andreas; Ament, Felix; Arbogast, Philippe; Crewell, Susanne; Doyle, James; Hirsch, Lutz; Mayer, Bernhard; McTaggart-Cowan, Ron; Methven, John; Rahm, Stephan; Rautenhaus, Marc; Reitebuch, Oliver; Rivière, Gwendal; Vaughan, Geraint; Wendisch, Manfred; Wernli, Heini; Wirth, Martin; Witschas, Benjamin

2017-04-01

First results will be presented from the NAWDEX experiment, an international field campaign with the overall goal of increasing the physical understanding and quantifying the effects of diabatic processes on disturbances to the jet stream over the North Atlantic, their influence on downstream propagation, and consequences for high-impact weather in Europe. The campaign took place from 19 September to 18 October 2016, and deployed a variety of remote-sensing and in-situ instruments that provided an extraordinarily detailed picture of the interacting dynamics and thermodynamics. Thirteen intensive observation periods took place over the course of the campaign, including moisture inflow and diabatic processes in warm conveyor belts, cloud and dynamical structure in outflow and ridge-building events, as well as other events This presentation will briefly review the weather events that were observed during NAWDEX and give a preliminary evaluation of how the observations contribute to new understanding of midlatitude weather systems. As an example, an analysis of the structure and evolution of ex-Tropical Storm Karl will be presented. This system was observed by a sequence of aircraft flights over a period of six days, as it moved from the subtropics into the midlatitudes off the coast of North America, reintensified explosively as a midlatitude cyclone south of Greenland, and eventually contributed to poor precipitation forecasts for Norway.

ENVIRONMENTAL TECHNOLOGY VERIFICATION REPORT: STORMWATER SOURCE AREA TREATMENT DEVICE: HYDRO INTERNATIONAL DOWNSTREAM DEFENDER®

EPA Science Inventory

Verification testing of the Hydro International Downstream Defender® was conducted at the Madison Water Utility in Madison, Wisconsin. The system was designed for a drainage basin estimated at 1.9 acres in size, but during intense storm events, the system received water from an a...

Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).

PubMed

Xiao, Kunhong; Sun, Jinpeng; Kim, Jihee; Rajagopal, Sudarshan; Zhai, Bo; Villén, Judit; Haas, Wilhelm; Kovacs, Jeffrey J; Shukla, Arun K; Hara, Makoto R; Hernandez, Marylens; Lachmann, Alexander; Zhao, Shan; Lin, Yuan; Cheng, Yishan; Mizuno, Kensaku; Ma'ayan, Avi; Gygi, Steven P; Lefkowitz, Robert J

2010-08-24

beta-Arrestin-mediated signaling downstream of seven transmembrane receptors (7TMRs) is a relatively new paradigm for signaling by these receptors. We examined changes in protein phosphorylation occurring when HEK293 cells expressing the angiotensin II type 1A receptor (AT1aR) were stimulated with the beta-arrestin-biased ligand Sar(1), Ile(4), Ile(8)-angiotensin (SII), a ligand previously found to signal through beta-arrestin-dependent, G protein-independent mechanisms. Using a phospho-antibody array containing 46 antibodies against signaling molecules, we found that phosphorylation of 35 proteins increased upon SII stimulation. These SII-mediated phosphorylation events were abrogated after depletion of beta-arrestin 2 through siRNA-mediated knockdown. We also performed an MS-based quantitative phosphoproteome analysis after SII stimulation using a strategy of stable isotope labeling of amino acids in cell culture (SILAC). We identified 1,555 phosphoproteins (4,552 unique phosphopeptides), of which 171 proteins (222 phosphopeptides) showed increased phosphorylation, and 53 (66 phosphopeptides) showed decreased phosphorylation upon SII stimulation of the AT1aR. This study identified 38 protein kinases and three phosphatases whose phosphorylation status changed upon SII treatment. Using computational approaches, we performed system-based analyses examining the beta-arrestin-mediated phosphoproteome including construction of a kinase-substrate network for beta-arrestin-mediated AT1aR signaling. Our analysis demonstrates that beta-arrestin-dependent signaling processes are more diverse than previously appreciated. Notably, our analysis identifies an AT1aR-mediated cytoskeletal reorganization network whereby beta-arrestin regulates phosphorylation of several key proteins, including cofilin and slingshot. This study provides a system-based view of beta-arrestin-mediated phosphorylation events downstream of a 7TMR and opens avenues for research in a rapidly evolving area of 7TMR signaling.

To what extent can green infrastructure mitigate downstream flooding in a peri-urban catchment?

NASA Astrophysics Data System (ADS)

Schubert, J. E.; Burns, M.; Sanders, B. F.; Flethcher, T.

2016-12-01

In this research, we couple an urban hydrologic model (MUSIC, eWater, AUS) with a fine resolution 2D hydrodynamic model (BreZo, UC Irvine, USA) to test to what extent retrofitting an urban watershed with stormwater control measures (SCMs) can propagate flood management benefits downstream. Our study site is the peri-urban Little Stringybark Creek (LSC) catchment in eastern Melbourne, AUS, with an area of 4.5 km2 and connected impervious area of 9%. Urban development is mainly limited to the upper 2 km2of the catchment. Since 2009 the LSC catchment has been the subject of a large-scale experiment aiming to restore morenatural flow by implementing over 300 SCMs, such as rain tanks and infiltration trenches, resulting in runoff from 50% of connected impervious areas now being intercepted by some form of SCM. For our study we calibrated the hydrologic and hydraulic models based on current catchment conditions, then we developed models representing alternative SCM scenarios including a complete lack of SCMs versus a full implementation of SCMs. Flow in the hydrologic/hydraulic models is forced using a range of synthetic rainfall events with annual exceedance probabilities (AEPs) between 63-1% and durations between 10 min to 24 hr. Metrics of SCM efficacy in changing flood regime include flood depths and extents, flow intensity (m2/s), flood duration, and critical storm duration leading to maximum flood conditions. Results indicate that across the range of AEPs tested and for storm durations equal or less than 3 hours, current SCM conditions reduce downstream flooded area on average by 29%, while a full implementation of SCMs would reduce downstream flooded area on average by 91%. A full implementation of SCMs could also lower maximum flow intensities by 83% on average, reducing damage potential to structures in the flow path and increasing the ability for vehicles to evacuate flooded streets. We also found that for storm durations longer than 3 hours, the SCMs capacity to retain rainfall runoff volumes is much decreased, with a full implementation of SCMs only reducing flooded area by 8% and flow intensity by 5.5%. Therefore additional measures are required for downstream flood hazard mitigation from long duration events.

Protein phosphorylation in plant immunity: insights into the regulation of pattern recognition receptor-mediated signaling

PubMed Central

Park, Chang-Jin; Caddell, Daniel F.; Ronald, Pamela C.

2012-01-01

Plants are continuously challenged by pathogens including viruses, bacteria, and fungi. The plant immune system recognizes invading pathogens and responds by activating an immune response. These responses occur rapidly and often involve post-translational modifications (PTMs) within the proteome. Protein phosphorylation is a common and intensively studied form of these PTMs and regulates many plant processes including plant growth, development, and immunity. Most well-characterized pattern recognition receptors (PRRs), including Xanthomonas resistance 21, flagellin sensitive 2, and elongation factor-Tu receptor, possess intrinsic protein kinase activity and regulate downstream signaling through phosphorylation events. Here, we focus on the phosphorylation events of plant PRRs that play important roles in the immune response. We also discuss the role of phosphorylation in regulating mitogen-associated protein kinase cascades and transcription factors in plant immune signaling. PMID:22876255

Sedimentological downstream effects of dam failure and the role of sediment connectivity: a case study from the Bohemian Massif, Austria

NASA Astrophysics Data System (ADS)

Wurster, Maria-Theresia; Weigelhofer, Gabriele; Pichler-Scheder, Christian; Hein, Thomas; Pöppl, Ronald

2017-04-01

Sediment connectivity describes the potential for sediment transport through catchment systems, further defining locality and characteristics of sedimentation in river channels. Dams generally decrease sediment connectivity and act as temporary sediment sinks. When dams are removed these sediments are being reworked and released downstream. During dam restoration works along a small-sized stream in the Bohemian Massif of Austria in December 2015 a dam failure occurred which led to the entrainment of several tons of fine-grained reservoir sediments further entering and depositing in the downstream channel reaches, located in the Thayatal National Park. Aiming to remove these fine sediment deposits the National Park Authority decided to initiate a flushing event in April 2016. The main aim of the present study was to investigate the effects of dam failure-induced fine sediment release and reservoir flushing on downstream bed sediment characteristics by applying geomorphological mapping (incl. volumetric surveys) and sedimentological analyses (freeze-core sampling and granulometry), further discussing the role of in-channel sediment connectivity. The obtained results have shown that immediately after the dam failure event a total of ca. 18 m3 of fine-grained sediments have accumulated as in-channel sediment bars which were primarily formed in zones of low longitudinal connectivity (e.g. in the backwater areas of woody debris jams, or at slip-off bank locations). The flushing event has been shown to have caused remobilization and downstream translocation of these deposits, further reducing their total volume by approx. 60%. The results of the granulometric analyses of the freeze-core samples have revealed fine sediment accumulation and storage in the upper parts of the channel bed, having further increased after the flushing event. Additionally, effects on chemical conditions and invertebrate community have been observed. These observations clearly indicate a significant influence of vertical connectivity conditions on in-channel fine sediment storage.

Temporal Clustering of Regional-Scale Extreme Precipitation Events in Southern Switzerland

NASA Astrophysics Data System (ADS)

Barton, Yannick; Giannakaki, Paraskevi; Von Waldow, Harald; Chevalier, Clément; Pfhal, Stephan; Martius, Olivia

2017-04-01

Temporal clustering of extreme precipitation events on subseasonal time scales is a form of compound extremes and is of crucial importance for the formation of large-scale flood events. Here, the temporal clustering of regional-scale extreme precipitation events in southern Switzerland is studied. These precipitation events are relevant for the flooding of lakes in southern Switzerland and northern Italy. This research determines whether temporal clustering is present and then identifies the dynamics that are responsible for the clustering. An observation-based gridded precipitation dataset of Swiss daily rainfall sums and ECMWF reanalysis datasets are used. To analyze the clustering in the precipitation time series a modified version of Ripley's K function is used. It determines the average number of extreme events in a time period, to characterize temporal clustering on subseasonal time scales and to determine the statistical significance of the clustering. Significant clustering of regional-scale precipitation extremes is found on subseasonal time scales during the fall season. Four high-impact clustering episodes are then selected and the dynamics responsible for the clustering are examined. During the four clustering episodes, all heavy precipitation events were associated with an upperlevel breaking Rossby wave over western Europe and in most cases strong diabatic processes upstream over the Atlantic played a role in the amplification of these breaking waves. Atmospheric blocking downstream over eastern Europe supported this wave breaking during two of the clustering episodes. During one of the clustering periods, several extratropical transitions of tropical cyclones in the Atlantic contributed to the formation of high-amplitude ridges over the Atlantic basin and downstream wave breaking. During another event, blocking over Alaska assisted the phase locking of the Rossby waves downstream over the Atlantic.

Modeling four occurred debris flow events in the Dolomites area (North-Eastern Italian Alps)

NASA Astrophysics Data System (ADS)

Boreggio, Mauro; Gregoretti, Carlo; Degetto, Massimo; Bernard, Martino

2016-04-01

Four occurred debris flows in the Dolomites area (North-Eastern Italian Alps) are modeled by back-analysis. The four debris flows events are those occurred at Rio Lazer (Trento) on the 4th of November 1966, at Fiames (Belluno) on the 5th of July 2006, at Rovina di Cancia (Belluno) on the 18th of July 2009 and at Rio Val Molinara (Trento) on the 15th of August 2010. In all the events, runoff entrained sediments present on natural channels and formed a solid-liquid wave that routed downstream. The first event concerns the routing of debris flow on an inhabited fan. The second event the deviation of debris flow from the usual path due to an obstruction with the excavation of a channel in the scree and the downstream spreading in a wood. The third event concerns the routing of debris flow in a channel with an ending the reservoir, its overtopping and final spreading in the inhabited area. The fourth event concerns the routing of debris flow along the main channel downstream the initiation area until spreading just upstream a village. All the four occurred debris flows are simulated by modeling runoff that entrained debris flow for determining the solid-liquid hydrograph. The routing of the solid-liquid hydrograph is simulated by a bi-phase cell model based on the kinematic approach. The comparison between simulated and measured erosion and deposition depths is satisfactory. Nearly the same parameters for computing erosion and deposition were used for all the four occurred events. The maps of erosion and deposition depths are obtained by comparing the results of post-event surveys with the pre-event DEM. The post-event surveys were conducted by using different instruments (LiDAR and GPS) or the combination photos-single points depth measurements (in this last case it is possible obtaining the deposition/erosion depths by means of stereoscopy techniques).

Impact of climate change on persistent turbidity in the water supply system of a Metropolitan Area

NASA Astrophysics Data System (ADS)

Chung, S. W.; Park, H. S.; Lim, K. J.; Kang, B.

2016-12-01

Persistent turbidity, a long-term resuspension of fine particles in aquatic system, is one of the major water quality concerns for the sustainable management of water supply systems in metropolitan areas. Turbid water has undesirable aesthetic and recreational appeal and may have harmful effect on ecosystem health, in addition to increasing water treatment costs in drinking water supply systems. These concerns have been more intensified as the strength and frequency of rainfall events increase by climate change in the Asian monsoon climate region, including Korea. The aim of this study was to assess the impact of potential climate change on the persistent turbidity of the Han River systems that supplies drinking water to approximately 25 million consumers dwelling in the Seoul Metropolitan areas. A comprehensive numerical and statistical modeling suit has been developed and applied to the systems for the projection of future climate, responding hydrological and soil erosion processes in the watershed, and sediment transport processes in the rivers and reservoirs systems. The down-scaled 100 years of climatic data from General Circulation Model (HadGEM2-AO) based on the IPCC's greenhouse-gas emissions scenario RCP4.5 were used for the forcing data of the watershed and river-reservoir models. As the results, an extreme flood event that may incur significant persistent turbidity was projected to be occurred five times in the future. The threshold of a flood event that is classified as an extreme event was based on the historical flood event that occurred on July of 2006 when turbid water had persisted within the Soyang Reservoir and discharged to the downstream of the Han River systems over the year until May of the following year. A two-dimensional river and reservoir model simulated the transport and dynamics of suspended sediments in Soyang Reservoir, and routed the discharged turbid water to the downstream of Paldang Reservoir, in which most of the drinking water offtake facilities are located. The statistical features of the extreme flood events, their impact on the persistent turbidity on the downstream rivers and reservoirs, and consequently on the water supply system of the Seoul Metropolitan areas will be presented in the special session.

Decision Making Methodology to Mitigate Damage From Glacial Lake Outburst Floods From Imja Lake in Nepal

NASA Astrophysics Data System (ADS)

McKinney, D. C.; Cuellar, A. D.

2015-12-01

Climate change has accelerated glacial retreat in high altitude glaciated regions of Nepal leading to the growth and formation of glacier lakes. Glacial lake outburst floods (GLOF) are sudden events triggered by an earthquake, moraine failure or other shock that causes a sudden outflow of water. These floods are catastrophic because of their sudden onset, the difficulty predicting them, and enormous quantity of water and debris rapidly flooding downstream areas. Imja Lake in the Himalaya of Nepal has experienced accelerated growth since it first appeared in the 1960s. Communities threatened by a flood from Imja Lake have advocated for projects to adapt to the increasing threat of a GLOF. Nonetheless, discussions surrounding projects for Imja have not included a rigorous analysis of the potential consequences of a flood, probability of an event, or costs of mitigation projects in part because this information is unknown or uncertain. This work presents a demonstration of a decision making methodology developed to rationally analyze the risks posed by Imja Lake and the various adaptation projects proposed using available information. In this work the authors use decision analysis, data envelopement analysis (DEA), and sensitivity analysis to assess proposed adaptation measures that would mitigate damage in downstream communities from a GLOF. We use an existing hydrodynamic model of the at-risk area to determine how adaptation projects will affect downstream flooding and estimate fatalities using an empirical method developed for dam failures. The DEA methodology allows us to estimate the value of a statistical life implied by each project given the cost of the project and number of lives saved to determine which project is the most efficient. In contrast the decision analysis methodology requires fatalities to be assigned a cost but allows the inclusion of uncertainty in the decision making process. We compare the output of these two methodologies and determine the sensitivity of the conclusions to changes in uncertain input parameters including project cost, value of a statistical life, and time to a GLOF event.

Quantitative Phospho-proteomic Analysis of TNFα/NFκB Signaling Reveals a Role for RIPK1 Phosphorylation in Suppressing Necrotic Cell Death.

PubMed

Mohideen, Firaz; Paulo, Joao A; Ordureau, Alban; Gygi, Steve P; Harper, J Wade

2017-07-01

TNFα is a potent inducer of inflammation due to its ability to promote gene expression, in part via the NFκB pathway. Moreover, in some contexts, TNFα promotes Caspase-dependent apoptosis or RIPK1/RIPK3/MLKL-dependent necrosis. Engagement of the TNF Receptor Signaling Complex (TNF-RSC), which contains multiple kinase activities, promotes phosphorylation of several downstream components, including TAK1, IKKα/IKKβ, IκBα, and NFκB. However, immediate downstream phosphorylation events occurring in response to TNFα signaling are poorly understood at a proteome-wide level. Here we use Tandem Mass Tagging-based proteomics to quantitatively characterize acute TNFα-mediated alterations in the proteome and phosphoproteome with or without inhibition of the cIAP-dependent survival arm of the pathway with a SMAC mimetic. We identify and quantify over 8,000 phosphorylated peptides, among which are numerous known sites in the TNF-RSC, NFκB, and MAP kinase signaling systems, as well as numerous previously unrecognized phosphorylation events. Functional analysis of S320 phosphorylation in RIPK1 demonstrates a role for this event in suppressing its kinase activity, association with CASPASE-8 and FADD proteins, and subsequent necrotic cell death during inflammatory TNFα stimulation. This study provides a resource for further elucidation of TNFα-dependent signaling pathways. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Mercury and Methylmercury Related to Historical Mercury Mining in Three Major Tributaries to Lake Berryessa, Upper Putah Creek Watershed, California

NASA Astrophysics Data System (ADS)

Sparks, G. C.; Alpers, C. N.; Horner, T. C.; Cornwell, K.; Izzo, V.

2016-12-01

The relative contributions of total mercury (THg) and methylmercury (MeHg) from upstream historical mercury (Hg) mining districts were examined in the three largest tributaries to Lake Berryessa, a reservoir with water quality impaired by Hg. A fish consumption advisory has been issued for the reservoir; also, in a study of piscivorous birds at 25 California reservoirs, blood samples from Lake Berryessa grebes had the highest THg concentration state-wide. The third and fourth largest historical Hg-producing mining districts in California are within the study area. These mining districts are located within the Pope Creek, Upper Putah Creek, and Knoxville-Eticuera Creeks watersheds. Downstream of the reservoir, Lower Putah Creek drains into the Yolo Bypass, a major source of THg and MeHg to the Sacramento-San Joaquin Delta. Study objectives included: (1) determining if tributaries downstream of historical Hg mining districts and draining to the reservoir are continuing sources of THg and MeHg; (2) characterizing variability of water and streambed sediment parameters in upstream and downstream reaches of each creek; and (3) estimating loads of suspended sediment, THg, and MeHg entering the reservoir from each tributary. Water samples were collected from October 2012 to September 2014 during non-storm and storm events along each tributary and analyzed for general water quality field parameters; unfiltered THg and MeHg; total suspended solids; and total particulate matter. Discharge measurements were made at the time of sample collection; flow and concentration data were combined to compute daily loads. To determine spatial variability, 135 streambed sediment samples were analyzed for THg, organic content (loss on ignition), and grain-size distribution. All three tributaries contribute THg and MeHg to the reservoir. Some consistent spatial trends in THg (water) concentrations were observed over multiple sampling events; THg (water) decreased from upstream to downstream in all three tributaries. Tributary reaches with elevated THg in streambed sediment ("Hg hot spots") are near or downstream from historical Hg mines and Hg-enriched ore deposits. Future Hg load and cycling studies are needed to identify practical remediation approaches for decreasing THg and MeHg loads to Lake Berryessa.

Flood hydrology and dam-breach hydraulic analyses of four reservoirs in the Black Hills, South Dakota

USGS Publications Warehouse

Hoogestraat, Galen K.

2011-01-01

Extensive information about the construction of dams or potential downstream hazards in the event of a dam breach is not available for many small reservoirs within the Black Hills National Forest. In 2009, the U.S. Forest Service identified the need for reconnaissance-level dam-breach assessments for four of these reservoirs within the Black Hills National Forest (Iron Creek, Horsethief, Lakota, and Mitchell Lakes) with the potential to flood downstream structures. Flood hydrology and dam-breach hydraulic analyses for the four selected reservoirs were conducted by the U.S. Geological Survey in cooperation with the U.S. Forest service to estimate the areal extent of downstream inundation. Three high-flow breach scenarios were considered for cases when the dam is in place (overtopped) and when a dam break (failure) occurs: the 100-year recurrence 24-hour precipitation, 500-year recurrence peak flow, and the probable maximum precipitation. Inundation maps were developed that show the estimated extent of downstream floodwaters from simulated scenarios. Simulation results were used to determine the hazard classification of a dam break (high, significant, or low), based primarily on the potential for loss of life or property damage resulting from downstream inundation because of the flood surge.The inflow design floods resulting from the two simulated storm events (100-year 24-hour and probable maximum precipitation) were determined using the U.S. Army Corps of Engineers Hydrologic Engineering Center Hydrologic Modeling System (HEC-HMS). The inflow design flood for the 500-year recurrence peak flow was determined by using regional regression equations developed for streamflow-gaging stations with similar watershed characteristics. The step-backwater hydraulic analysis model, Hydrologic Engineering Center's River Analysis System (HEC-RAS), was used to determine water-surface profiles of in-place and dam-break scenarios for the three inflow design floods that were simulated. Inundation maps for in-place and dam-break scenarios were developed for the area downstream from the dam to the mouth of each stream.Dam-break scenarios for three of the four reservoirs assessed in this study were rated as low hazards owing to absence of permanent structures downstream from the dams. Iron Creek Lake's downstream channel to its mouth does not include any permanent structures within the inundation flood plains. For the two reservoirs with the largest watershed areas, Lakota and Mitchell Lake, the additional floodwater surge resulting from a dam break would be minor relative to the magnitude of the large flood streamflow into the reservoirs, based on the similar areal extent of inundation for the in-place and dam-break scenarios as indicated by the developed maps. A dam-break scenario at Horsethief Lake is rated as a significant hazard because of potential lives-in-jeopardy in downstream dwellings and appreciable economic loss.

Stormwater Runoff and Water Quality Modeling in Urban Maryland

NASA Astrophysics Data System (ADS)

Wang, J.; Forman, B. A.; Natarajan, P.; Davis, A.

2015-12-01

Urbanization significantly affects storm water runoff through the creation of new impervious surfaces such as highways, parking lots, and rooftops. Such changes can adversely impact the downstream receiving water bodies in terms of physical, chemical, and biological conditions. In order to mitigate the effects of urbanization on downstream water bodies, stormwater control measures (SCMs) have been widely used (e.g., infiltration basins, bioswales). A suite of observations from an infiltration basin installed adjacent to a highway in urban Maryland was used to evaluate stormwater runoff attenuation and pollutant removal rates at the well-instrumented SCM study site. In this study, the Storm Water Management Model (SWMM) was used to simulate the performance of the SCM. An automatic, split-sample calibration framework was developed to improve SWMM performance efficiency. The results indicate SWMM can accurately reproduce the hydraulic response of the SCM (in terms of reproducing measured inflow and outflow) during synoptic scale storm events lasting more than one day, but is less accurate during storm events lasting only a few hours. Similar results were found for a suite of modeled (and observed) water quality constituents, including suspended sediment, metals, N, P, and chloride.

Characteristic length scales and time-averaged transport velocities of suspended sediment in the mid-Atlantic Region, USA

USGS Publications Warehouse

Pizzuto, James; Schenk, Edward R.; Hupp, Cliff R.; Gellis, Allen; Noe, Greg; Williamson, Elyse; Karwan, Diana L.; O'Neal, Michael; Marquard, Julia; Aalto, Rolf E.; Newbold, Denis

2014-01-01

Watershed Best Management Practices (BMPs) are often designed to reduce loading from particle-borne contaminants, but the temporal lag between BMP implementation and improvement in receiving water quality is difficult to assess because particles are only moved downstream episodically, resting for long periods in storage between transport events. A theory is developed that describes the downstream movement of suspended sediment particles accounting for the time particles spend in storage given sediment budget data (by grain size fraction) and information on particle transit times through storage reservoirs. The theory is used to define a suspended sediment transport length scale that describes how far particles are carried during transport events, and to estimate a downstream particle velocity that includes time spent in storage. At 5 upland watersheds of the mid-Atlantic region, transport length scales for silt-clay range from 4 to 60 km, while those for sand range from 0.4 to 113 km. Mean sediment velocities for silt-clay range from 0.0072 km/yr to 0.12 km/yr, while those for sand range from 0.0008 km/yr to 0.20 km/yr, 4–6 orders of magnitude slower than the velocity of water in the channel. These results suggest lag times of 100–1000 years between BMP implementation and effectiveness in receiving waters such as the Chesapeake Bay (where BMPs are located upstream of the characteristic transport length scale). Many particles likely travel much faster than these average values, so further research is needed to determine the complete distribution of suspended sediment velocities in real watersheds.

Contributions of human activities to suspended sediment yield during storm events from a small, steep, tropical watershed

NASA Astrophysics Data System (ADS)

Messina, A. M.; Biggs, T. W.

2016-07-01

Suspended sediment concentrations (SSC) and yields (SSY) were measured during storm and non-storm periods from undisturbed and human-disturbed portions of a small (1.8 km2), mountainous watershed that drains to a sediment-stressed coral reef. Event-wise SSY (SSYEV) was calculated for 142 storms from measurements of water discharge (Q), turbidity (T), and SSC measured downstream of three key sediment sources: undisturbed forest, an aggregate quarry, and a village. SSC and SSYEV were significantly higher downstream of the quarry during both storm- and non-storm periods. The human-disturbed subwatershed (10.1% disturbed) accounted for an average of 87% of SSYEV from the watershed. Observed sediment yield (mass) to the coast, including human disturbed subwatersheds, was 3.9× the natural background. Specific SSY (mass/area) from the disturbed quarry area was 49× higher than from natural forest compared with 8× higher from the village area. Similar to mountainous watersheds in semi-arid and temperate climates, SSYEV from both the undisturbed and disturbed watersheds correlated closely with maximum event discharge (Qmax), event total precipitation and event total Q, but not with the Erosivity Index. Best estimates of annual SSY varied by method, from 45 to 143 tons/km2/yr from the undisturbed subwatershed, 441-598 tons/km2/yr from the human-disturbed subwatershed, and 241-368 tons/km2/yr from the total watershed. Sediment yield was very sensitive to disturbance; the quarry covers 1.1% of the total watershed area, but contributed 36% of SSYEV. Given the limited access to gravel for infrastructure development, sediment disturbance from local aggregate mining may be a critical sediment source on remote islands in the Pacific and elsewhere. Identification of erosion hotspots like the quarry using rapid, event-wise measures of suspended sediment yield will help efforts to mitigate sediment stress and restore coral reefs.

Particle injection and acceleration at earth's bow shock - Comparison of upstream and downstream events

NASA Technical Reports Server (NTRS)

Ellison, Donald C.; Moebius, Eberhard; Paschmann, Goetz

1990-01-01

The injection and acceleration of thermal solar wind ions at the quasi-parallel earth's bow shock during radial interplanetary magnetic field conditions is investigated. Active Magnetospheric Particle Tracer Explorers/Ion Release Module satellite observations of complete proton spectra, and of heavy ion spectra above 10 keV/Q, made on September 12, 1984 near the nose of the shock, are presented and compared to the predictions of a Monte Carlo shock simulation which includes diffusive shock acceleration. It is found that the spectral observations are in good agreement with the predictions of the simulation when it is assumed that all accelerated ions originate in the solar wind and are injected into the acceleration mechanism by thermal leakage from the downstream plasma. The efficiency, which is determined directly from the downstream observations, is high, with at least 15 percent of the solar wind energy flux going into accelerated particles. The comparisons allow constraints to be placed on the rigidity dependence of the scattering mean free path and suggest that the upstream solar wind must be slowed substantially by backstreaming accelerated ions prior to undergoing a sharp transition in the viscous subshock.

Stereo Particle Image Velocimetry Measurements of Transition Downstream of a Backward-Facing Step in a Swept-Wing Boundary Layer

NASA Technical Reports Server (NTRS)

Eppink, Jenna L.; Yao, Chung-Sheng

2017-01-01

Stereo particle image velocimetry measurements were performed downstream of a backward-facing step in a stationary-cross flow dominated flow. The PIV measurements exhibit excellent quantitative and qualitative agreement with the previously acquired hotwire data. Instantaneous PIV snapshots reveal new information about the nature and cause of the \\spikes" that occurred prior to breakdown in both the hotwire and PIV data. The PIV snapshots show that the events occur simultaneously across multiple stationary cross flow wavelengths, indicating that this is not simply a local event, but is likely caused by the 2D Tollmien-Schlichting instability that is introduced by the step. While the TS instability is a 2D instability, it is also modulated in the spanwise direction due to interactions with the stationary cross flow, as are the other unsteady disturbances present. Because of this modulation, the "spike" events cause an instantaneous increase of the spanwise modulation of the streamwise and spanwise velocity initially caused by the stationary cross flow. Breakdown appears to be caused by this instantaneous modulation, possibly due to a high-frequency secondary instability similar to a traveling-cross flow breakdown scenario. These results further illuminate the respective roles of the stationary cross flow and unsteady disturbances in transition downstream of a backward-facing step.

Role of hydrological events in sediment and sediment-associated heavy metals transport within a continental transboundary river system - Tuul River case study (Mongolia)

NASA Astrophysics Data System (ADS)

Pietroń, Jan; Jarsjö, Jerker

2013-04-01

The concentration of heavy metals in rivers is often greater in the sediment load than in the water solution. Overall, heavy metal conveyance with sediment transport is a significant contributor to the global transport of heavy metals. Heavy metals once released to a river system may remain in the deposits of the river from short to very long times, for instance depending on to which extent erosion and deposition can influence the sediment mass stored in the river bed. In general, the mobility of contaminated sediments to downstream water recipients may to large extent be governed by natural sediment transport dynamics during hydrological events, such as flow peaks following heavy rainfalls. The Tuul River (Northern Mongolia) belongs to a Tuul River-Orkhon River-Selenga River- transboundary river system that discharges into Lake Baikal. The river system is largely characterized by its natural hydrological regime with numerous rapid peak flow events of the spring-summer periods. However, recent studies indicate contamination of fine sediment with heavy metals coming from placer gold mining area (Zaamar Goldfield) located along the downstream Tuul River. In this work, the general idea is to create a one-dimensional sediment transport model of the downstream Tuul River, and use field-data supported modeling to investigate natural erosion-deposition rates and the role of peak flows in natural sediment transport at 14 km reach just downstream the gold mining area. The model results show that the sediment load of the finest investigated grain size has a great potential to be eroded from the bed of the studied reach, especially during the main peak flow events. However, the same events are associated with a significant deposition of the finest material. The model results also show different hysteresis behavior of the sediment load rating curves (clockwise and counter-clockwise) during the main peak flow events. These are interpreted as effects of changing in-channel sediment supplies due to sorting method applied in the model. More generally, the modelling may increase our knowledge about the sediment transport patterns of the reach downstream the mining area. This part of the river may be considered as a temporal sink of heavy metals which may accumulate and store sediments. The deposition in such sinks can considerably support attenuation of contaminated sediment loads. On the other hand, sediments that are accumulated in sinks can increase the concentration of contaminated sediment loads during peak flow events. Information about the rates of eroded and accumulated contaminated material in such sinks is important for future water protection planning, especially under changing climate conditions. This work may also provide scientific input to discussions on both adverse environmental consequences of placer mining, and suitable designs of sediment control measures in the Zaamar Goldfield and other continental river systems.

Modulation of focal adhesion constituents and their down-stream events by EGF: On the cross-talk of integrins and growth factor receptors.

PubMed

Eberwein, Philipp; Laird, Dougal; Schulz, Simon; Reinhard, Thomas; Steinberg, Thorsten; Tomakidi, Pascal

2015-10-01

Within the concept of integrin growth factor receptor (GFR) cross-talk, little is known about the effects of GFRs on focal adhesions (FAs). Therefore, we tested the hypothesis whether EGF can modulate constituents of FAs and subsequent down-stream events. To this end, EGF-treated keratinocytes were subjected to combined fluorescence imaging and western blotting, to quantify expression and/or activation of molecules, involved in integrin GFR cross-talk, and receptor proximal and distal signaling events. Generally, EGF response revealed an amplified redistribution or activation of molecules under study, which will be explained in detail from the plasma membrane to the cell interior. In addition to significant activation of EGF receptor (EGFR) at tyrosine Tyr845, a remarkable redistribution was detectable for the focal adhesion constituents, integrin ß1 and ß3, and zyxin. Increased activation also applied to focal adhesion kinase (FAK) by phosphorylation at Tyr397, Tyr576, and Src at Tyr418, while total FAK remained unchanged. Risen activity was seen as well for the analyzed distal down-stream events, p190RhoGAP and MAP kinases p42/44. Intriguingly, Src-specific inhibitor Herbimycin A abrogated the entire EGF response except FAK Tyr397 phosphorylation, independent of EGF presence. Mechanistically, our results show that EGF modulates adhesion in a dual fashion, by firstly redistributing focal adhesion constituents to adhesion sites, but also by amplifying levels of activated RhoA antagonist p190RhoGAP, important for cell motility. Further, the findings suggest that the observed EGF response underlies an EGFR integrin cross-talk under recruitment of receptor proximal FAK and Src, and MAP kinase and p190RhoGAP as receptor distal events. Copyright © 2015 Elsevier B.V. All rights reserved.

Dynamic decision making for dam-break emergency management - Part 2: Application to Tangjiashan landslide dam failure

NASA Astrophysics Data System (ADS)

Peng, M.; Zhang, L. M.

2013-02-01

Tangjiashan landslide dam, which was triggered by the Ms = 8.0 Wenchuan earthquake in 2008 in China, threatened 1.2 million people downstream of the dam. All people in Beichuan Town 3.5 km downstream of the dam and 197 thousand people in Mianyang City 85 km downstream of the dam were evacuated 10 days before the breaching of the dam. Making such an important decision under uncertainty was difficult. This paper applied a dynamic decision-making framework for dam-break emergency management (DYDEM) to help rational decision in the emergency management of the Tangjiashan landslide dam. Three stages are identified with different levels of hydrological, geological and social-economic information along the timeline of the landslide dam failure event. The probability of dam failure is taken as a time series. The dam breaching parameters are predicted with a set of empirical models in stage 1 when no soil property information is known, and a physical model in stages 2 and 3 when knowledge of soil properties has been obtained. The flood routing downstream of the dam in these three stages is analyzed to evaluate the population at risk (PAR). The flood consequences, including evacuation costs, flood damage and monetized loss of life, are evaluated as functions of warning time using a human risk analysis model based on Bayesian networks. Finally, dynamic decision analysis is conducted to find the optimal time to evacuate the population at risk with minimum total loss in each of these three stages.

Sediment Transport Over Run-of-River Dams

NASA Astrophysics Data System (ADS)

O'Brien, M.; Magilligan, F. J.; Renshaw, C. E.

2016-12-01

Dams have numerous documented effects that can degrade river habitat downstream. One significant effect of large dams is their ability to trap sediment delivered from upstream. This trapping can alter sediment transport and grain size downstream - effects that often motivate dam removal decisions. However, recent indirect observations and modeling studies indicate that small, run-of-river (ROR) dams, which do not impede discharge, may actually leak sediment downstream. However, there are no direct measurements of sediment flux over ROR dams. This study investigates flow and sediment transport over four to six different New England ROR dams over a summer-fall field season. Sediment flux was measured using turbidity meters and tracer (RFID) cobbles. Sediment transport was also monitored through an undammed control site and through a river where two ROR dams were recently removed. These data were used to predict the conditions that contribute to sediment transport and trapping. Year 1 data show that tracer rocks of up to 61 mm were transported over a 3 m ROR dam in peak flows of 84% of bankfull stage. These tracer rocks were transported over and 10 m beyond the dam and continue to move downstream. During the same event, comparable suspended sediment fluxes of up to 81 g/s were recorded both upstream and downstream of the dam at near-synchronous timestamps. These results demonstrate the potential for sediment transport through dammed rivers, even in discharge events that do not exceed bankfull. This research elucidates the effects of ROR dams and the controls on sediment transport and trapping, contributions that may aid in dam management decisions.

Stream bank and sediment movement associated with 2008 flooding, South Fork Iowa River

USDA-ARS?s Scientific Manuscript database

Stream bank erosion can cause substantial damage to riparian systems and impact the use of water downstream. Risks of bank erosion increase during extreme flood events, and frequencies of extreme events may be increasing under changing climate. We assessed bank erosion within the South Fork Iowa Riv...

C. elegans sym-1 is a downstream target of the hunchback-like-1 developmental timing transcription factor

PubMed Central

Niwa, Ryusuke; Hada, Kazumasa; Moliyama, Kouichi; Ohniwa, Ryosuke L.; Tan, Yi-Meng; Olsson-Carter, Katherine; Chi, Woo; Reinke, Valerie; Slack, Frank J.

2010-01-01

In the nematode Caenorhabditis elegans, the let-7 microRNA (miRNA) and its family members control the timing of key developmental events in part by directly regulating expression of hunchback-like-1 (hbl-1). C. elegans hbl-1 mutants display multiple developmental timing deficiencies, including cell cycle defects during larval development. While hbl-1 is predicted to encode a transcriptional regulator, downstream targets of HBL-1 have not been fully elucidated. Here we report using microarray analysis to uncover genes downstream of HBL-1. We established a transgenic strain that overexpresses hbl-1 under the control of a heat shock promoter. Heat shock-induced hbl-1 overexpression led to retarded hypodermal structures at the adult stage, opposite to the effect seen in loss of function (lf) hbl-1 mutants. The microarray screen identified numerous potential genes that are upregulated or downregulated by HBL-1, including sym-1, which encodes a leucine-rich repeat protein with a signal sequence. We found an increase in sym-1 transcription in the heat shock-induced hbl-1 overexpression strain, while loss of hbl-1 function caused a decrease in sym-1 expression levels. Furthermore, we found that sym-1(lf) modified the hypodermal abnormalities in hbl-1 mutants. Given that SYM-1 is a protein secreted from hypodermal cells to the surrounding cuticle, we propose that the adult-specific cuticular structures may be under the temporal control of HBL-1 through regulation of sym-1 transcription. PMID:19923914

Ensemble-based diagnosis of the large-scale processes associated with multiple high-impact weather events over North America during late October 2007

NASA Astrophysics Data System (ADS)

Moore, B. J.; Bosart, L. F.; Keyser, D.

2013-12-01

During late October 2007, the interaction between a deep polar trough and Tropical Cyclone (TC) Kajiki off the eastern Asian coast perturbed the North Pacific jet stream and resulted in the development of a high-amplitude Rossby wave train extending into North America, contributing to three concurrent high-impact weather events in North America: wildfires in southern California associated with strong Santa Ana winds, a cold surge into eastern Mexico, and widespread heavy rainfall (~150 mm) in the south-central United States. Observational analysis indicates that these high-impact weather events were all dynamically linked with the development of a major high-latitude ridge over the eastern North Pacific and western North America and a deep trough over central North America. In this study, global operational ensemble forecasts from the European Centre for Medium-Range Weather Forecasts (ECMWF) obtained from The Observing System Research and Predictability Experiment (THORPEX) Interactive Grand Global Ensemble (TIGGE) archive are used to characterize the medium-range predictability of the large-scale flow pattern associated with the three events and to diagnose the large-scale atmospheric processes favorable, or unfavorable, for the occurrence of the three events. Examination of the ECMWF forecasts leading up to the time period of the three high-impact weather events (~23-25 October 2007) indicates that ensemble spread (i.e., uncertainty) in the 500-hPa geopotential height field develops in connection with downstream baroclinic development (DBD) across the North Pacific, associated with the interaction between TC Kajiki and the polar trough along the eastern Asian coast, and subsequently moves downstream into North America, yielding considerable uncertainty with respect to the structure, amplitude, and position of the ridge-trough pattern over North America. Ensemble sensitivity analysis conducted for key sensible weather parameters corresponding to the three high-impact weather events, including relative humidity, temperature, and precipitation, demonstrates quantitatively that all three high-impact weather events are closely linked with the development of the ridge-trough pattern over North America. Moreover, results of this analysis indicate that the development of the ridge-trough pattern is modulated by DBD and cyclogenesis upstream over the central and eastern North Pacific. Specifically, ensemble members exhibiting less intense cyclogenesis and a more poleward cyclone track over the central and eastern North Pacific feature the development of a poleward-displaced ridge over the eastern North Pacific and western North America and a cut-off low over the Intermountain West, an unfavorable scenario for the occurrence the three high-impact weather events. Conversely, ensemble members exhibiting more intense cyclogenesis and a less poleward cyclone track feature persistent ridging along the western coast of North America and trough development over central North America, establishing a favorable flow pattern for the three high-impact weather events. Results demonstrate that relatively small initial differences in the large-scale flow pattern over the North Pacific among ensemble members can result in large uncertainty in the forecast downstream flow response over North America.

Fell-Muir lecture: connective tissue growth factor (CCN2) – a pernicious and pleiotropic player in the development of kidney fibrosis

PubMed Central

Mason, Roger M

2013-01-01

Connective tissue growth factor (CTGF, CCN2) is a member of the CCN family of matricellular proteins. It interacts with many other proteins, including plasma membrane proteins, modulating cell function. It is expressed at low levels in normal adult kidney cells but is increased in kidney diseases, playing important roles in inflammation and in the development of glomerular and interstitial fibrosis in chronic disease. This review reports the evidence for its expression in human and animal models of chronic kidney disease and summarizes data showing that anti-CTGF therapy can successfully attenuate fibrotic changes in several such models, suggesting that therapies targeting CTGF and events downstream of it in renal cells may be useful for the treatment of human kidney fibrosis. Connective tissue growth factor stimulates the development of fibrosis in the kidney in many ways including activating cells to increase extracellular matrix synthesis, inducing cell cycle arrest and hypertrophy, and prolonging survival of activated cells. The relationship between CTGF and the pro-fibrotic factor TGFβ is examined and mechanisms by which CTGF promotes signalling by the latter are discussed. No specific cellular receptors for CTGF have been discovered but it interacts with and activates several plasma membrane proteins including low-density lipoprotein receptor-related protein (LRP)-1, LRP-6, tropomyosin-related kinase A, integrins and heparan sulphate proteoglycans. Intracellular signalling and downstream events triggered by such interactions are reviewed. Finally, the relationships between CTGF and several anti-fibrotic factors, such as bone morphogenetic factor-4 (BMP4), BMP7, hepatocyte growth factor, CCN3 and Oncostatin M, are discussed. These may determine whether injured tissue heals or progresses to fibrosis. PMID:23110747

Effect of flow rate and lead/copper pipe sequence on lead release from service lines.

PubMed

Cartier, Clément; Arnold, Roger B; Triantafyllidou, Simoni; Prévost, Michèle; Edwards, Marc

2012-09-01

A pilot experiment examined lead leaching from four representative configurations of service lines including: (1) 100% lead (Pb), (2) 100% copper (Cu), (3) 50% Pb upstream of 50% Cu, and (4) 50% Pb-downstream of 50% Cu using a range of flow rates. The cumulative mass of lead release indicated that a typical partial replacement configuration (50% lead downstream of copper) did not provide a net reduction in lead when compared to 100% lead pipe (85 mg for 50% Pb-downstream versus 83 mg for 100%-Pb) due to galvanic and deposition corrosion. The partially replaced service line configuration also had a much greater likelihood of producing water with "spikes" of lead particulates at higher flow rates, while tending to produce lower levels of lead at very low flow rates. After the first 214 days the galvanic current between copper and lead was only reduced by 34%, proving that galvanic impacts can be highly persistent even in water with optimized corrosion control by dosing of zinc orthophosphate. Finally, this experiment raises concern about the low flow rates used during some prior home sampling events, which may underestimate exposure to lead during normal water use, especially when galvanic Pb:Cu connections are present. Copyright © 2012 Elsevier Ltd. All rights reserved.

Interactions between Channel Morphology and the Propagation of Coarse Sediment Augmentations Downstream from Dams

NASA Astrophysics Data System (ADS)

Gaeuman, D. A.; Dickenson, S.; Pyles, M.

2009-12-01

Gravel augmentations are being implemented in a number of streams where natural recruitment of gravel is impeded by dams. Uncertainties relevant to the management of gravel augmentations include the quantities of gravel needed to achieve habitat benefits at downstream locations and the temporal and spatial scales over which those benefits that will be realized. The solution to such questions depends to a large extent on how gravel slugs evolve as the material is transported downstream, i.e., whether the gravel translates downstream as a coherent wave or whether it tends to disperse. A number of recent studies conducted in laboratory flumes or by numerical simulation that gravels slugs tend to disperse rather than translate. However, these studies do not consider the influence of channel morphology on slug behavior. Initial monitoring results based from 2 California streams suggest that natural channel morphology suppresses slug dispersion because the gravel tends to accumulate in discrete deposition zones. Field mapping and about 200 tracer stones implanted with passive integrated transponder (PIT) tags show that gravel recruitment piles of about 80 tons each placed in Grass Valley Creek in 2007 and 2008 were deposited as 2 new bars immediately downstream. The more upstream of the 2 bars formed during the 2007 winter and spring flood season, whereas the more downstream bar did not appear until the following year. A sharp deposition front and an absence of tracers in the reaches downstream strongly suggest that none of the added gravel was transported downstream beyond the area of bar formation in either year. A relatively small proportion of the mobilized tracer particles (59%) were located following the 2007 flood season, probably due to deep burial in the newly deposited bar and to radio interference caused by the high concentration of tracers in a small area. The proportion of newly introduced or previously-located tracers that were relocated in 2009 was considerably higher (88%), suggesting that average burial depths decrease as the deposition front moves downstream. In addition, about one quarter of the tracers that were missing in 2008 were recovered in 2009, indicating that some of the particles buried during the first flood season were exhumed the following year. Changes in bed topography downstream from a gravel augmentation in the Trinity River provide additional evidence that the presence of discrete deposition zones in stream channels tends to suppress gravel dispersion. Repeat bathymetric surveys conducted in the Trinity River before and after placement of 1000 tons of gravel during a 2008 high-flow event show that a quantity of gravel equivalent to the augmentation volume was deposited on the first bar downstream from the augmentation point.

Hydrologic connectivity of floodplains, northern Missouri: implications for management and restoration of floodplain forest communities in disturbed landscapes

USGS Publications Warehouse

Jacobson, R.; Faust, T.

2014-01-01

Hydrologic connectivity between the channel and floodplain is thought to be a dominant factor determining floodplain processes and characteristics of floodplain forests. We explored the role of hydrologic connectivity in explaining floodplain forest community composition along streams in northern Missouri, USA. Hydrologic analyses at 20 streamgages (207–5827 km2 area) document that magnitudes of 2-year return floods increase systematically with increasing drainage area whereas the average annual number and durations of floodplain-connecting events decrease. Flow durations above the active-channel shelf vary little with increasing drainage area, indicating that the active-channel shelf is in quasi-equilibrium with prevailing conditions. The downstream decrease in connectivity is associated with downstream increase in channel incision. These relations at streamflow gaging stations are consistent with regional channel disturbance patterns: channel incision increases downstream, whereas upstream reaches have either not incised or adjusted to incision by forming new equilibrium floodplains. These results provide a framework to explain landscape-scale variations in composition of floodplain forest communities in northern Missouri. Faust (2006) had tentatively explained increases of flood-dependent tree species, and decreases of species diversity, with a downstream increase in flood magnitude and duration. Because frequency and duration of floodplain-connecting events do not increase downstream, we hypothesize instead that increases in relative abundance of flood-dependent trees at larger drainage area result from increasing size of disturbance patches. Bank-overtopping floods at larger drainage area create large, open, depositional landforms that promoted the regeneration of shade-intolerant species. Higher tree species diversity in floodplains with small drainage areas is associated with non-incised floodplains that are frequently connected to their channels and therefore subject to greater effective hydrologic variability compared with downstream floodplains. Understanding the landscape-scale geomorphic and hydrologic controls on floodplain connectivity provides a basis for more effective management and restoration of floodplain forest communities.

Edaravone alleviates Alzheimer's disease-type pathologies and cognitive deficits.

PubMed

Jiao, Shu-Sheng; Yao, Xiu-Qing; Liu, Yu-Hui; Wang, Qing-Hua; Zeng, Fan; Lu, Jian-Jun; Liu, Jia; Zhu, Chi; Shen, Lin-Lin; Liu, Cheng-Hui; Wang, Ye-Ran; Zeng, Gui-Hua; Parikh, Ankit; Chen, Jia; Liang, Chun-Rong; Xiang, Yang; Bu, Xian-Le; Deng, Juan; Li, Jing; Xu, Juan; Zeng, Yue-Qin; Xu, Xiang; Xu, Hai-Wei; Zhong, Jin-Hua; Zhou, Hua-Dong; Zhou, Xin-Fu; Wang, Yan-Jiang

2015-04-21

Alzheimer's disease (AD) is one of most devastating diseases affecting elderly people. Amyloid-β (Aβ) accumulation and the downstream pathological events such as oxidative stress play critical roles in pathogenesis of AD. Lessons from failures of current clinical trials suggest that targeting multiple key pathways of the AD pathogenesis is necessary to halt the disease progression. Here we show that Edaravone, a free radical scavenger that is marketed for acute ischemic stroke, has a potent capacity of inhibiting Aβ aggregation and attenuating Aβ-induced oxidation in vitro. When given before or after the onset of Aβ deposition via i.p. injection, Edaravone substantially reduces Aβ deposition, alleviates oxidative stress, attenuates the downstream pathologies including Tau hyperphosphorylation, glial activation, neuroinflammation, neuronal loss, synaptic dysfunction, and rescues the behavioral deficits of APPswe/PS1 mice. Oral administration of Edaravone also ameliorates the AD-like pathologies and memory deficits of the mice. These findings suggest that Edaravone holds a promise as a therapeutic agent for AD by targeting multiple key pathways of the disease pathogenesis.

Modelling Glacial Lake Outburst Floods: Key Considerations and Challenges Posed By Climatic Change

NASA Astrophysics Data System (ADS)

Westoby, M.

2014-12-01

The number and size of moraine-dammed supraglacial and proglacial lakes is increasing as a result of contemporary climatic change. Moraine-dammed lakes are capable of impounding volumes of water in excess of 107 m3, and often represent a very real threat to downstream communities and infrastructure, should the bounding moraine fail and produce a catastrophic Glacial Lake Outburst Flood (GLOF). Modelling the individual components of a GLOF, including a triggering event, the complex dam-breaching process and downstream propagation of the flood is incredibly challenging, not least because direct observation and instrumentation of such high-magnitude flows is virtually impossible. We briefly review the current state-of-the-art in numerical GLOF modelling, with a focus on the theoretical and computational challenges associated with reconstructing or predicting GLOF dynamics in the face of rates of cryospheric change that have no historical precedent, as well as various implications for researchers and professionals tasked with the production of hazard maps and disaster mitigation strategies.

Fuel injection assembly for use in turbine engines and method of assembling same

DOEpatents

Uhm, Jong Ho; Johnson, Thomas Edward

2015-03-24

A fuel injection assembly for use in a turbine engine is provided. The fuel injection assembly includes a plurality of tube assemblies, wherein each of the tube assemblies includes an upstream portion and a downstream portion. Each tube assembly includes a plurality of tubes that extend from the upstream portion to the downstream portion or from the upstream portion through the downstream portion. At least one injection system is coupled to at least one tube assembly of the plurality of tube assemblies. The injection system includes a fluid supply member that extends from a fluid source to the downstream portion of the tube assembly. The fluid supply member includes a first end portion located in the downstream portion of the tube assembly, wherein the first end portion has at least one first opening for channeling fluid through the tube assembly to facilitate reducing a temperature therein.

Release of Mercury Mine Tailings from Mine Impacted Watersheds by Extreme Events Resulting from Climate Change

NASA Astrophysics Data System (ADS)

Rytuba, J. J.

2015-12-01

An increase in intensity and frequency of extreme events resulting from climate change is expected to result in extreme precipitation events on both regional and local scales. Extreme precipitation events have the potential to mobilize large volumes of mercury (Hg) mine tailings in watersheds where tailings reside in the floodplain downstream from historic Hg mines. The California Hg mineral belt produced one third of the worlds Hg from over 100 mines from the 1850's to 1972. In the absence of environmental regulations, tailings were disposed of into streams adjacent to the mines in order to have them transported from the mine site during storm events. Thus most of the tailings no longer reside at the mine site. Addition of tailings to the streams resulted in stream aggradation, increased over-bank flow, and deposition of tailings in the floodplain for up to 25 kms downstream from the mines. After cessation of mining, the decrease in tailings entering the streams resulted in degradation, incision of the streams into the floodplain, and inability of the streams to access the floodplain. Thus Hg tailings have remained stored in the floodplain since cessation of mining. Hg phases in these tailings consist of cinnabar, metacinnabar and montroydite based on EXAFS analysis. Size analysis indicates that Hg phases are fine grained, less than 1 um. The last regional scale extreme precipitation events to effect the entire area of the California Hg mineral belt were the ARkStorm events of 1861-1862 that occurred prior to large scale Hg mining. Extreme regional ARkStorm precipitation events as well as local summer storms, such as the July 2006 flood in the Clear Creek Hg mining district, are expected to increase in frequency and have the potential to remobilize the large volume of tailings stored in floodplain deposits. Although Hg mine remediation has decreased Hg release from mine sites in a period of benign climate, no remediation efforts have addressed the large source of Hg residing in floodplain deposits. This Hg source in a period of climate change poses a significant environmental risk to aquatic systems downstream from Hg mine-impacted watersheds. An extreme ARkStorm event is estimated to potentially remobilize an amount of Hg equivalent to that released in the past during the peak period of unregulated Hg mining in California.

Lunar Surface Electric Potential Changes Associated with Traversals through the Earth's Foreshock

NASA Technical Reports Server (NTRS)

Collier, Michael R.; Hills, H. Kent; Stubbs, Timothy J.; Halekas, Jasper S.; Delory, Gregory T.; Espley, Jared; Farrell, William M.; Freeman, John W.; Vondrak, Richard

2011-01-01

We report an analysis of one year of Suprathermal Ion Detector Experiment (SIDE) Total Ion Detector (TID) resonance events observed between January 1972 and January 1973. The study includes only those events during which upstream solar wind conditions were readily available. The analysis shows that these events are associated with lunar traversals through the dawn flank of the terrestrial magnetospheric bow shock. We propose that the events result from an increase in lunar surface electric potential effected by secondary electron emission due to primary electrons in the Earth's foreshock region (although primary ions may play a role as well). This work establishes (1) the lunar surface potential changes as the Moon moves through the terrestrial bow shock, (2) the lunar surface achieves potentials in the upstream foreshock region that differ from those in the downstream magnetosheath region, (3) these differences can be explained by the presence of energetic electron beams in the upstream foreshock region and (4) if this explanation is correct, the location of the Moon with respect to the terrestrial bow shock influences lunar surface potential.

To what extent do long-duration high-volume dam releases influence river-aquifer interactions? A case study in New South Wales, Australia

NASA Astrophysics Data System (ADS)

Graham, P. W.; Andersen, M. S.; McCabe, M. F.; Ajami, H.; Baker, A.; Acworth, I.

2015-03-01

Long-duration high-volume dam releases are unique anthropogenic events with no naturally occurring equivalents. The impact from such dam releases on a downstream Quaternary alluvial aquifer in New South Wales, Australia, is assessed. It is observed that long-duration (>26 days), high-volume dam releases (>8,000 ML/day average) result in significant variations in river-aquifer interactions. These variations include a flux from the river to the aquifer up to 6.3 m3/day per metre of bank (at distances of up to 330 m from the river bank), increased extent and volume of recharge/bank storage, and a long-term (>100 days) reversal of river-aquifer fluxes. In contrast, during lower-volume events (<2,000 ML/day average) the flux was directed from the aquifer to the river at rates of up to 1.6 m3/day per metre of bank. A groundwater-head prediction model was constructed and river-aquifer fluxes were calculated; however, predicted fluxes from this method showed poor correlation to fluxes calculated using actual groundwater heads. Long-duration high-volume dam releases have the potential to skew estimates of long-term aquifer resources and detrimentally alter the chemical and physical properties of phreatic aquifers flanking the river. The findings have ramifications for improved integrated management of dam systems and downstream aquifers.

Lack of Detection of Bt Sugarcane Cry1Ab and NptII DNA and Proteins in Sugarcane Processing Products Including Raw Sugar

PubMed Central

Cheavegatti-Gianotto, Adriana; Gentile, Agustina; Oldemburgo, Danielle Angeloni; Merheb, Graciela do Amaral; Sereno, Maria Lorena; Lirette, Ron Peter; Ferreira, Thais Helena Silva; de Oliveira, Wladecir Salles

2018-01-01

Brazil is the largest sugarcane producer and the main sugar exporter in the world. The industrial processes applied by Brazilian mills are very efficient in producing highly purified sugar and ethanol. Literature presents evidence of lack of DNA/protein in these products, regardless of the nature of sugarcane used as raw material. Recently CTNBio, the Brazilian biosafety authority, has approved the first biotechnology-derived sugarcane variety for cultivation, event CTC175-A, which expresses the Cry1Ab protein to control the sugarcane borer (Diatraea saccharalis). The event also expresses neomycin-phosphotransferase type II (NptII) protein used as selectable marker during the transformation process. Because of the high purity of sugar and ethanol produced from genetically modified sugarcane, these end-products should potentially be classified as “pure substances, chemically defined,” by Brazilian Biosafety Law No. 11.105. If this classification is to be adopted, these substances are not considered as “GMO derivatives” and fall out of the scope of Law No. 11.105. In order to assess sugar composition and quality, we evaluate Cry1Ab and NptII expression in several sugarcane tissues and in several fractions from laboratory-scale processing of event CTC175-A for the presence of these heterologous proteins as well as for the presence of traces of recombinant DNA. The results of these studies show that CTC175-A presents high expression of Cry1Ab in leaves and barely detectable expression of heterologous proteins in stalks. We also evaluated the presence of ribulose-1,5-bisphosphate carboxylase/oxygenase protein and DNA in the fractions of the industrial processing of conventional Brazilian sugarcane cultivars. Results from both laboratory and industrial processing were concordant, demonstrating that DNA and protein are not detected in the clarified juice and downstream processed fractions, including ethanol and raw sugar, indicating that protein and DNA are removed and/or degraded during processing. In conclusion, the processing of conventional sugarcane and CTC175-A Bt event results in downstream products with no detectable concentrations of heterologous DNA or new protein. These results help in the classification of sugar and ethanol derived from CTC175-A event as pure, chemically defined substances in Brazil and may relieve regulatory burdens in countries that import Brazilian sugar. PMID:29637070

Lithologic and hydrologic controls of mixed alluvial-bedrock channels in flood-prone fluvial systems: bankfull and macrochannels in the Llano River watershed, central Texas, USA

USGS Publications Warehouse

Heitmuller, Frank T.; Hudson, Paul F.; Asquith, William H.

2015-01-01

The rural and unregulated Llano River watershed located in central Texas, USA, has a highly variable flow regime and a wide range of instantaneous peak flows. Abrupt transitions in surface lithology exist along the main-stem channel course. Both of these characteristics afford an opportunity to examine hydrologic, lithologic, and sedimentary controls on downstream changes in channel morphology. Field surveys of channel topography and boundary composition are coupled with sediment analyses, hydraulic computations, flood-frequency analyses, and geographic information system mapping to discern controls on channel geometry (profile, pattern, and shape) and dimensions along the mixed alluvial-bedrock Llano River and key tributaries. Four categories of channel classification in a downstream direction include: (i) uppermost ephemeral reaches, (ii) straight or sinuous gravel-bed channels in Cretaceous carbonate sedimentary zones, (iii) straight or sinuous gravel-bed or bedrock channels in Paleozoic sedimentary zones, and (iv) straight, braided, or multithread mixed alluvial–bedrock channels with sandy beds in Precambrian igneous and metamorphic zones. Principal findings include: (i) a nearly linear channel profile attributed to resistant bedrock incision checkpoints; (ii) statistically significant correlations of both alluvial sinuosity and valley confinement to relatively high f (mean depth) hydraulic geometry values; (iii) relatively high b (width) hydraulic geometry values in partly confined settings with sinuous channels upstream from a prominent incision checkpoint; (iv) different functional flow categories including frequently occurring events (< 1.5-year return periods) that mobilize channel-bed material and less frequent events that determine bankfull channel (1.5- to 3-year return periods) and macrochannel (10- to 40-year return periods) dimensions; (v) macrochannels with high f values (most ≤ 0.45) that develop at sites with unit stream power values in excess of 200 watts per square meter (W/m2); and (vi) downstream convergence of hydraulic geometry exponents for bankfull and macrochannels, explained by co-increases of flood magnitude and noncohesive sandy sediments that collectively minimize development of alluvial bankfull indicators. Collectively, these findings indicate that mixed alluvial–bedrock channels exhibit first-order lithologic controls (lithologic resistance and valley confinement) of channel geometry, second-order hydrologic (flow regime) control of channel dimensions, and third-order sedimentary controls that exert subsidiary influence on channel shape and bed configuration.

ATM-Dependent Phosphorylation of All Three Members of the MRN Complex: From Sensor to Adaptor.

PubMed

Lavin, Martin F; Kozlov, Sergei; Gatei, Magtouf; Kijas, Amanda W

2015-10-23

The recognition, signalling and repair of DNA double strand breaks (DSB) involves the participation of a multitude of proteins and post-translational events that ensure maintenance of genome integrity. Amongst the proteins involved are several which when mutated give rise to genetic disorders characterised by chromosomal abnormalities, cancer predisposition, neurodegeneration and other pathologies. ATM (mutated in ataxia-telangiectasia (A-T) and members of the Mre11/Rad50/Nbs1 (MRN complex) play key roles in this process. The MRN complex rapidly recognises and locates to DNA DSB where it acts to recruit and assist in ATM activation. ATM, in the company of several other DNA damage response proteins, in turn phosphorylates all three members of the MRN complex to initiate downstream signalling. While ATM has hundreds of substrates, members of the MRN complex play a pivotal role in mediating the downstream signalling events that give rise to cell cycle control, DNA repair and ultimately cell survival or apoptosis. Here we focus on the interplay between ATM and the MRN complex in initiating signaling of breaks and more specifically on the adaptor role of the MRN complex in mediating ATM signalling to downstream substrates to control different cellular processes.

Vulnerability assessment of Glacial Lake Outburst Floods using Remote Sensing and GIS in North Sikkim (India), Eastern Himalaya

NASA Astrophysics Data System (ADS)

Aggarwal, Suruchi; Probha Devi, Juna; Thakur, Praveen Kumar; Rai, Suresh Chand

2016-04-01

Glacial lake outburst floods (GLOFs) occur when glacier melt water dammed by a moraine is released in short time. Such floods may lead to disastrous events posing, therefore, a huge threat to human lives and infrastructure. A devastating GLOF in Uttarakhand, India, on 17 July 2013 has led to the loss of all villages in a stretch of 18 km downstream the lake and the loss of more than 5000 lives. The present study evaluates all 16 glacial lakes (with an area >0.1 km²) in the Thangu valley, northern Sikkim (India), eastern Himalaya, with respect to potential threats for the downstream areas. The hazard criteria for the study include slope, aspect and distance of the respective parent glacier, change in the lake area, dam characteristics and lake depth. For the most hazardous lakes, the socio-economic conditions in the downstream areas (settlements and infrastructure) are analysed regarding the impact of potential GLOFs. For the vulnerability analysis, we used various satellite products including LANDSAT, RESOUCESAT-1 and 2, RISAT-1 imageries and ASTER GDEM covering the period from 1977 to 2014. For lake mapping, we applied the Normalized Difference Vegetation Index (NDVI) and the Normalized Difference Snow Index (NDSI). A Land Use Land Cover (LULC) map of the study area showing in-situ observations is serving as driving factor for the vulnerability analysis. The results of the study show that almost all evaluated glacial lakes were expanding during the study period (1977-2014). Combining the hazard criteria for the lakes, 5 of the 16 studied glacial lakes are identified as highly hazardous. In the downstream area, there are two villages with 200 inhabitants and an army camp within the zone of highest vulnerability. The identified vulnerability zones may be used by the local authorities to take caution of the threatened villages and infrastructure and for risk analysis for planned future hydropower plants.

Wave breaking induced surface wakes and jets observed during a bora event

NASA Astrophysics Data System (ADS)

Jiang, Qingfang; Doyle, James D.

2005-09-01

An observational and modeling study of a bora event that occurred during the field phase of the Mesoscale Alpine Programme is presented. Research aircraft in-situ measurements and airborne remote-sensing observations indicate the presence of strong low-level wave breaking and alternating surface wakes and jets along the Croatian coastline over the Adriatic Sea. The observed features are well captured by a high-resolution COAMPS simulation. Analysis of the observations and modeling results indicate that the long-extending wakes above the boundary layer are induced by dissipation associated with the low-level wave breaking, which locally tends to accelerate the boundary layer flow beneath the breaking. Farther downstream of the high peaks, a hydraulic jump occurs in the boundary layer, which creates surface wakes. Downstream of lower-terrain (passes), the boundary layer flow stays strong, resembling supercritical flow.

Classification of Rotor Induced Shearing Events in the Near Wake of a Wind Turbine Array Boundary Layer

NASA Astrophysics Data System (ADS)

Smith, Sarah; Viggiano, Bianca; Ali, Naseem; Cal, Raul Bayoan

2017-11-01

Flow perturbation induced by a turbine rotor imposes considerable turbulence and shearing effects in the near wake of a turbine, altering the efficiency of subsequent units within a wind farm array. Previous methods have characterized near wake vorticity of a turbine and recovery distance of various turbine array configurations. This study aims to build on previous analysis with respect to a turbine rotor within an array and develop a model to examine stress events and energy contribution in the near wake due to rotational effects. Hot wire anemometry was employed downstream of a turbine centrally located in the third row of a 3x3 array. Data considered points planar to the rotor and included simultaneous streamwise and wall-normal velocities as well as concurrent streamwise and transverse velocities. Conditional analysis of Reynolds stresses induced by the rotor agree with former near wake research, and examination of stresses in terms of streamwise and transverse velocity components depicts areas of significant rotational effects. Continued analysis includes spectral decomposition and conditional statistics to further characterize shearing events at various points considering the swept area of the rotor.

Design of a sediment-monitoring gaging network on ephemeral tributaries of the Colorado River in Glen, Marble, and Grand Canyons, Arizona

USGS Publications Warehouse

Griffiths, Ronald E.; Topping, David J.; Anderson, Robert S.; Hancock, Gregory S.; Melis, Theodore S.

2014-01-01

Management of sediment in rivers downstream from dams requires knowledge of both the sediment supply and downstream sediment transport. In some dam-regulated rivers, the amount of sediment supplied by easily measured major tributaries may overwhelm the amount of sediment supplied by the more difficult to measure lesser tributaries. In this first class of rivers, managers need only know the amount of sediment supplied by these major tributaries. However, in other regulated rivers, the cumulative amount of sediment supplied by the lesser tributaries may approach the total supplied by the major tributaries. The Colorado River downstream from Glen Canyon has been hypothesized to be one such river. If this is correct, then management of sediment in the Colorado River in the part of Glen Canyon National Recreation Area downstream from the dam and in Grand Canyon National Park may require knowledge of the sediment supply from all tributaries. Although two major tributaries, the Paria and Little Colorado Rivers, are well documented as the largest two suppliers of sediment to the Colorado River downstream from Glen Canyon Dam, the contributions of sediment supplied by the ephemeral lesser tributaries of the Colorado River in the lowermost Glen Canyon, and Marble and Grand Canyons are much less constrained. Previous studies have estimated amounts of sediment supplied by these tributaries ranging from very little to almost as much as the amount supplied by the Paria River. Because none of these previous studies relied on direct measurement of sediment transport in any of the ephemeral tributaries in Glen, Marble, or Grand Canyons, there may be significant errors in the magnitudes of sediment supplies estimated during these studies. To reduce the uncertainty in the sediment supply by better constraining the sediment yield of the ephemeral lesser tributaries, the U.S. Geological Survey Grand Canyon Monitoring and Research Center established eight sediment-monitoring gaging stations beginning in 2000 on the larger of the previously ungaged tributaries of the Colorado River downstream from Glen Canyon Dam. The sediment-monitoring gaging stations consist of a downward-looking stage sensor and passive suspended-sediment samplers. Two stations are equipped with automatic pump samplers to collect suspended-sediment samples during flood events. Directly measuring discharge and collecting suspended-sediment samples in these remote ephemeral streams during significant sediment-transporting events is nearly impossible; most significant run-off events are short-duration events (lasting minutes to hours) associated with summer thunderstorms. As the remote locations and short duration of these floods make it prohibitively expensive, if not impossible, to directly measure the discharge of water or collect traditional depth-integrated suspended-sediment samples, a method of calculating sediment loads was developed that includes documentation of stream stages by field instrumentation, modeling of discharges associated with these stages, and automatic suspended-sediment measurements. The approach developed is as follows (1) survey and model flood high-water marks using a two-dimensional hydrodynamic model, (2) create a stage-discharge relation for each site by combining the modeled flood flows with the measured stage record, (3) calculate the discharge record for each site using the stage-discharge relation and the measured stage record, and (4) calculate the instantaneous and cumulative sediment loads using the discharge record and suspended-sediment concentrations measured from samples collected with passive US U-59 samplers and ISCOTM pump samplers. This paper presents the design of the gaging network and briefly describes the methods used to calculate discharge and sediment loads. The design and methods herein can easily be used at other remote locations where discharge and sediment loads are required.

Assessing the continuity of the upland sediment cascade, fluvial geomorphic response of an upland river to an extreme flood event: Storm Desmond, Cumbria, UK.

NASA Astrophysics Data System (ADS)

Joyce, Hannah; Hardy, Richard; Warburton, Jeff

2017-04-01

Hillslope erosion and accelerated lake sedimentation are often viewed as the source and main storage elements in the upland sediment cascade. However, the continuity of sediment transfer through intervening valley systems has rarely been evaluated during extreme events. Storm Desmond (4th - 6th December, 2015) produced record-breaking rainfall maximums in the UK: 341.4 mm rainfall was recorded in a 24 hour period at Honister Pass, Western Lake District, and 405 mm of rainfall was recorded in a 38 hour period at Thirlmere, central Lake District. The storm was the largest in a 150 year local rainfall series, and exceeded previous new records set in the 2005 and 2009 floods. During this exceptional event, rivers over topped flood defences, and caused damage to over 257 bridges, flooded over 5000 homes and businesses, and caused substantial geomorphic change along upland rivers. This research quantifies the geomorphic and sedimentary response to Storm Desmond along a regulated gravel-bed river: St John's Beck. St John's Beck (length 7.8 km) is a channelised low gradient river (0.005) downstream of Thirlmere Reservoir, which joins the River Greta, and flows through Keswick, where major flooding has occurred, before discharging into Bassenthwaite Lake. St John's Beck has a history of chronic sediment aggradation, erosion and reports of historic flooding date back to 1750. During Storm Desmond, riverbanks were eroded, coarse sediment was deposited across valuable farmland and access routes were destroyed, including a bridge and footpaths, disrupting local business. A sediment budget framework has been used to quantify geomorphic change and sedimentary characteristics of the event along St John's Beck. The volume and sediment size distribution of flood deposits, channel bars, tributary deposits, floodplain scour, riverbank erosion and in-channel bars were measured directly in the field and converted to mass using local estimates of coarse and fine sediment bulk densities. During the event 5000 tonnes of sediment was deposited on floodplains surrounding St John's Beck; 65% of this sediment was deposited in the first 3 km of the reach downstream of Thirlmere Reservoir where the channel is unconfined and channel slope and capacity rapidly decrease. Flood sediment deposits were composed of a single layer of sediment of a similar grain size distribution (mean D90 116 mm), with fines generally sparse. The main source of sediment deposited during the event originated from the channel bed and banks; 1500 tonnes of sediment was stored within channel bars. Approximately 2000 tonnes of sediment was eroded from the riverbanks during the event; with local lateral riverbank recession exceeding 12 m. An estimated 500 tonnes of sediment was scoured from the floodplains along the first 3 km of the reach downstream of Thirlmere Reservoir, with local floodplain scour around a bridge estimated at 300 tonnes. Overall, this sediment budget study demonstrates the importance of valley systems as a major source and sink of sediment along the upland sediment cascade during an extreme flood event.

Endocrine-related adverse events associated with immune checkpoint blockade and expert insights on their management.

PubMed

Sznol, Mario; Postow, Michael A; Davies, Marianne J; Pavlick, Anna C; Plimack, Elizabeth R; Shaheen, Montaser; Veloski, Colleen; Robert, Caroline

2017-07-01

Agents that modulate immune checkpoint proteins, such as cytotoxic T-lymphocyte antigen-4 (CTLA-4) and programmed death receptor-1 (PD-1), have become a mainstay in cancer treatment. The clinical benefit afforded by immune checkpoint inhibitors can be accompanied by immune-related adverse events (irAE) that affect the skin, gastrointestinal tract, liver, and endocrine system. The types of irAEs associated with immune checkpoint inhibitors are generally consistent across tumor types. Immune-related endocrine events can affect the pituitary, thyroid, and adrenal glands, as well as other downstream target organs. These events are unique when compared with other irAEs because the manifestations are often irreversible. Immune-related endocrine events are typically grade 1/2 in severity and often present with non-specific symptoms, making them difficult to diagnose. The mechanisms underlying immune-related target organ damage in select individuals remain mostly undefined. Management includes close patient monitoring, appropriate laboratory testing for endocrine function, replacement of hormones, and consultation with an endocrinologist when appropriate. An awareness of the symptoms and management of immune-related endocrine events may aid in the safe and appropriate use of immune checkpoint inhibitors in clinical practice. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Waste heat recovery system for recapturing energy after engine aftertreatment systems

DOEpatents

Ernst, Timothy C.; Nelson, Christopher R.

2014-06-17

The disclosure provides a waste heat recovery (WHR) system including a Rankine cycle (RC) subsystem for converting heat of exhaust gas from an internal combustion engine, and an internal combustion engine including the same. The WHR system includes an exhaust gas heat exchanger that is fluidly coupled downstream of an exhaust aftertreatment system and is adapted to transfer heat from the exhaust gas to a working fluid of the RC subsystem. An energy conversion device is fluidly coupled to the exhaust gas heat exchanger and is adapted to receive the vaporized working fluid and convert the energy of the transferred heat. The WHR system includes a control module adapted to control at least one parameter of the RC subsystem based on a detected aftertreatment event of a predetermined thermal management strategy of the aftertreatment system.

Prediction of the run out extents of the Slano Blato landslide for future debris flow events

NASA Astrophysics Data System (ADS)

Askarinejad, Amin; Leu, Pascal; Macek, Matej; Petkovsek, Ana; Springman, Sarah

2013-04-01

The Slano Blato landslide has a volume of about 1 mio m3 and is located in the western part of Slovenia. It has been considered to be a potential natural hazard for the village of Lokavec for more than 200 years. Several mud flows, exhibiting a range of volumes and velocities, have originated from the landslide body since the year 2000, when the landslide was reactivated due to an intense rainfall event. A series of obstacles, including safety dams and deposition ponds, have been constructed for the remediation of the landslide. These obstacles are designed to absorb and contain future debris flow hazard. A prerequisite to any risk analysis is to establish the vulnerability to the hazard event. The aim of this work is to simulate possible future debris flow scenarios in order to predict the run out distances, flow heights, impact pressures and potential effects on the downstream village buildings and infrastructure. The simulations were carried out using the RAMMS program (RApid Mass MovementS, www.ramms.slf.ch). A three dimensional terrain model of the landslide area and the downstream zones, with or without the inclusion of the obstacles, was made for the simulations and different scenarios concerning the released volume, the internal friction and viscosity of the sliding mass were studied. The results indicate that low viscosity mudflows with a volume of 5,000 m3 endanger some parts of Lokavec village. However, the simulations with volumes of 15,000 and 50,000 m3 predict catastrophic effects in terms of either impact pressures or deposition heights for the majority of houses. Moreover, the simulations confirmed that the choice of the material properties (internal friction and viscosity), the characteristics of the release hydrograph, event location, and natural or man-made obstacles play major roles in the run out distances and impact pressures.

Akt3 is a privileged first responder in isozyme-specific electrophile response.

PubMed

Long, Marcus J C; Parvez, Saba; Zhao, Yi; Surya, Sanjna L; Wang, Yiran; Zhang, Sheng; Aye, Yimon

2017-03-01

Isozyme-specific post-translational regulation fine tunes signaling events. However, redundancy in sequence or activity renders links between isozyme-specific modifications and downstream functions uncertain. Methods to study this phenomenon are underdeveloped. Here we use a redox-targeting screen to reveal that Akt3 is a first-responding isozyme sensing native electrophilic lipids. Electrophile modification of Akt3 modulated downstream pathway responses in cells and Danio rerio (zebrafish) and markedly differed from Akt2-specific oxidative regulation. Digest MS sequencing identified Akt3 C119 as the privileged cysteine that senses 4-hydroxynonenal. A C119S Akt3 mutant was hypomorphic for all downstream phenotypes shown by wild-type Akt3. This study documents isozyme-specific and chemical redox signal-personalized physiological responses.

Calcium signaling in mammalian egg activation and embryo development: Influence of subcellular localization

PubMed Central

Miao, Yi-Liang; Williams, Carmen J.

2012-01-01

Calcium (Ca2+) signals drive the fundamental events surrounding fertilization and the activation of development in all species examined to date. Initial studies of Ca2+ signaling at fertilization in marine animals were tightly linked to new discoveries of bioluminescent proteins and their use as fluorescent Ca2+ sensors. Since that time, there has been rapid progress in our understanding of the key functions for Ca2+ in many cell types and the impact of cellular localization on Ca2+ signaling pathways. In this review, which focuses on mammalian egg activation, we consider how Ca2+ is regulated and stored at different stages of oocyte development and examine the functions of molecules that serve as both regulators of Ca2+ release and effectors of Ca2+ signals. We then summarize studies exploring how Ca2+ directs downstream effectors mediating both egg activation and later signaling events required for successful preimplantation embryo development. Throughout this review, we focus attention on how localization of Ca2+ signals influences downstream signaling events, and attempt to highlight gaps in our knowledge that are ripe areas for future research. PMID:22888043

Multiyear Downstream Response to Dam Removal on the White Salmon River, WA

NASA Astrophysics Data System (ADS)

Wilcox, A. C.; O'Connor, J. E.; Major, J. J.

2017-12-01

The 2011 removal of the 38 m tall Condit Dam on the White Salmon River, Washington was one of the largest dam removals to date, in terms of both dam height and sediment release. We examined the multiyear geomorphic response to this event, through 2015, including in a bedrock-confined canyon and in a less-confined, backwater-influenced pool reach near the river's mouth, to the large, rapid influx of fine reservoir sediment produced by the breach and to subsequent sediment transfer in the free-flowing White Salmon River. In the canyon reach, aggraded sediments were rapidly eroded from riffles, returning them toward pre-breach bed elevations within weeks, but pool aggradation persisted for longer. The downstream, less-confined reach transformed from a deep pool to a narrower pool-riffle channel with alternate bars; multiyear observations showed persistence of bars and of this new and distinct morphology. This downstream reach marks a rare case in post-dam removal channel response; in most dam removals, channels have rapidly reverted toward pre-removal morphology, as in the canyon reach here. Comparison of the multiyear geomorphic evolution of the White Salmon River to other recent large dam removals in the U.S. allows evaluation of the relative influences of antecedent channel morphology, post-breach hydrology, and dam removal style, as well as providing a basis for predicting responses to future dam removals.

Retention and Migration of Fine Organic Particles within an Agricultural Stream: Toenepi, Waikato, New Zealand

NASA Astrophysics Data System (ADS)

Drummond, J. D.; Davies-Colley, R.; Stott, R.; Sukias, J.; Nagels, J.; Sharp, A.; Packman, A. I.

2013-12-01

Fine organic particle dynamics are important to stream biogeochemistry, ecology, and transport of contaminant microbes. These particles migrate downstream through a series of deposition and resuspension events, which results in a wide range of residence times. This retention influences biogeochemical processing and in-stream stores of contaminant microbes that may mobilize during flood events and present a hazard to downstream uses such as water supplies and recreation. We are conducting studies to gain insights into organic particle dynamics in streams, with a campaign of experiments and modeling. The results should improve understanding of nutrient (C, N, P) spiraling and fine sediment movement in streams, and have particular application to microbial hazards. We directly measure microbial transport by including the indicator organism, E. coli, as a tracer, which is compared to a fluorescent inert particle tracer and conservative solute to gain insight on both microbial ecology and waterborne disease transmission. We developed a stochastic model to describe the transport and retention of fine suspended particles in rivers, including advective delivery of particles to the streambed, transport through porewaters, and reversible filtration within the streambed. Because fine particles are only episodically transported in streams, with intervening periods at rest in the bed, this transport process violates conventional advection-dispersion assumptions. Instead we adopt a stochastic mobile-immobile model formulation to describe fine particle transport. We apply this model to measurements of particle transport from multiple tracer experiments in an agricultural stream in the Waikato dairy region of New Zealand, and use the model to improve interpretation of baseflow particle dynamics. Our results show the importance of the benthic and hyporheic regions and in-stream vegetation as a reservoir for fine organic particles in streams.

Poleward Tropical Moisture Transport and its Link to Four Sequential Extreme Weather Events over North America in October 2007

NASA Astrophysics Data System (ADS)

Bosart, L. F.; Cordeira, J. M.; Archambault, H. M.; Moore, B. J.

2014-12-01

A case of four sequentially linked extreme weather events (EWEs) during 22 - 31 October 2007 which included wildfires in southern California, cold surges in northern and eastern Mexico, widespread heavy rain in the eastern United Sates, and heavy rains in southern Mexico is presented. These EWEs were preceded by a rapid dynamically driven rapid amplification of the upper-level flow across the North Pacific and North America associated with the formation of a large-amplitude Rossby wave train (RWT) through downstream baroclinic development involving multiple tropical and polar disturbance interactions with the North Pacific jet stream. The primary contributors to the formation of the large-amplitude RWT were two sequential upper-level polar disturbances, a diabatic Rossby vortex, western North Pacific TC Kajiki, and migratory extratropical cyclones (ECs). Deep subtropical and tropical moisture plumes resembling "atmospheric rivers" drawn poleward along warm conveyor belts into the warm sectors of these ECs played a critical role in further amplifying the downstream upper-level ridges based on an Eulerian analysis of negative potential vorticity advection by the irrotational wind and a Lagrangian trajectory analysis of tropical and subtropical moisture sources. In particular, these atmospheric rivers extending poleward from TC Kajiki and from the subtropical eastern North Pacific into the warm sectors of polar disturbance-generated ECs over the western and eastern North Pacific, respectively, bolstered latent heat release and ridge building and contributed to additional upper-level flow amplification. The EWEs occurred subsequent to anticyclonic wave breaking over western North America and the concomitant downstream formation of a meridionally elongated potential vorticity streamer over the central United States. The resulting high-amplitude flow pattern over North America favored the formation of the aforementioned EWEs by promoting an extensive meridional exchange of air masses from high and low latitudes.

Identification of the first de novo PAR1 deletion downstream of SHOX in an individual diagnosed with Léri-Weill dyschondrosteosis (LWD).

PubMed

Barroso, Eva; Benito-Sanz, Sara; Belinchón, Alberta; Yuste-Checa, Patricia; Gracia, Ricardo; Aragones, Angel; Campos-Barros, Angel; Heath, Karen E

2010-01-01

Léri-Weill dyschondrosteosis (LWD, MIM 127300), is a dominantly inherited skeletal dysplasia with disproportionate short stature, mesomelic limb shortening, and the characteristic Madelung deformity. Two regions of the pseudoautosomal region 1 (PAR1) have been shown to be involved in LWD, SHOX (short-stature homeobox-containing gene) and the downstream enhancer region. We report our genetic findings of a young girl clinically diagnosed with LWD. We analyzed the proband and her family using MLPA and microsatellite analysis. We identified a deletion, 726-866 kb in size, of the downstream SHOX enhancer region in the proband. Neither parent carried the deletion. Microsatellite analysis showed that the deleted allele was of paternal origin. The mutation is more likely to have arisen from a de novo event but paternal gonadal mosaicism cannot be excluded. In conclusion, we report the clinical and molecular details of the first case of a de novo deletion of the downstream PAR1 region in an LWD individual. De novo deletions of SHOX and the downstream enhancer region must be therefore considered in cases of isolated LWD. Copyright 2010 Elsevier Masson SAS. All rights reserved.

Climate change impact on infection risks during bathing downstream of sewage emissions from CSOs or WWTPs.

PubMed

Sterk, Ankie; de Man, Heleen; Schijven, Jack F; de Nijs, Ton; de Roda Husman, Ana Maria

2016-11-15

Climate change is expected to influence infection risks while bathing downstream of sewage emissions from combined sewage overflows (CSOs) or waste water treatment plants (WWTPs) due to changes in pathogen influx, rising temperatures and changing flow rates of the receiving waters. In this study, climate change impacts on the surface water concentrations of Campylobacter, Cryptosporidium and norovirus originating from sewage were modelled. Quantitative microbial risk assessment (QMRA) was used to assess changes in risks of infection. In general, infection risks downstream of WWTPs are higher than downstream CSOs. Even though model outputs show an increase in CSO influxes, in combination with changes in pathogen survival, dilution within the sewage system and bathing behaviour, the effects on the infection risks are limited. However, a decrease in dilution capacity of surface waters could have significant impact on the infection risks of relatively stable pathogens like Cryptosporidium and norovirus. Overall, average risks are found to be higher downstream WWTPs compared to CSOs. Especially with regard to decreased flow rates, adaptation measures on treatment at WWTPs may be more beneficial for human health than decreasing CSO events. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Effects of Urban Stormwater Infrastructure and Spatial Scale on Nutrient Export and Runoff from Semi-Arid Urban Catchments

NASA Astrophysics Data System (ADS)

Hale, R. L.; Turnbull, L.; Earl, S.; Grimm, N. B.

2011-12-01

There has been an abundance of literature on the effects of urbanization on downstream ecosystems, particularly due to changes in nutrient inputs as well as hydrology. Less is known, however, about nutrient transport processes and processing in urban watersheds. Engineered drainage systems are likely to play a significant role in controlling the transport of water and nutrients downstream, and variability in these systems within and between cities may lead to differences in the effects of urbanization on downstream ecosystems over time and space. We established a nested stormwater sampling network with 12 watersheds ranging in scale from 5 to 17000 ha in the Indian Bend Wash watershed in Scottsdale, AZ. Small (<200ha) watersheds had uniform land cover (medium density residential), but were drained by a variety of stormwater infrastructure including surface runoff, pipes, natural or modified washes, and retention basins. At the outlet of each of these catchments we monitored rainfall and discharge, and sampled stormwater throughout runoff events for dissolved nitrogen (N), phosphorus (P), and organic carbon (oC). Urban stormwater infrastructure is characterized by a range of hydrologic connectivity. Piped watersheds are highly connected and runoff responds linearly to rainfall events, in contrast to watersheds drained with retention basins and washes, where runoff exhibits a nonlinear threshold response to rainfall events. Nutrient loads from piped watersheds scale linearly with total storm rainfall. Because of frequent flushing, nutrient concentrations from these sites are lower than from wash and retention basin drained sites and total nutrient loads exhibit supply limitation, e.g., nutrient loads are poorly predicted by storm rainfall and are strongly controlled by factors that determine the amount of nutrients stored within the watershed, such as antecedent dry days. In contrast, wash and retention basin-drained watersheds exhibit transport limitation. These watersheds flow less frequently than pipe-drained sites and therefore stormwater has higher concentrations of nutrients, although total loads are significantly lower. Nonlinearities in cross-storm rainfall-nutrient loading relationships for the wash and retention basin watersheds suggest that these systems may become supply limited during large rain events. Results show that characteristics of the hydrologic network such as hydrologic connectivity mediate terrestrial-aquatic linkages. Specifically, we see that increased hydrologic connectivity, as in the piped watershed, actually decreases the predictive power of storm size with regard to nutrient export, whereas nutrient loads from poorly connected watersheds are strongly predicted by storm size.

Genomic Investigation Reveals Highly Conserved, Mosaic, Recombination Events Associated with Capsular Switching among Invasive Neisseria meningitidis Serogroup W Sequence Type (ST)-11 Strains.

PubMed

Mustapha, Mustapha M; Marsh, Jane W; Krauland, Mary G; Fernandez, Jorge O; de Lemos, Ana Paula S; Dunning Hotopp, Julie C; Wang, Xin; Mayer, Leonard W; Lawrence, Jeffrey G; Hiller, N Luisa; Harrison, Lee H

2016-07-03

Neisseria meningitidis is an important cause of meningococcal disease globally. Sequence type (ST)-11 clonal complex (cc11) is a hypervirulent meningococcal lineage historically associated with serogroup C capsule and is believed to have acquired the W capsule through a C to W capsular switching event. We studied the sequence of capsule gene cluster (cps) and adjoining genomic regions of 524 invasive W cc11 strains isolated globally. We identified recombination breakpoints corresponding to two distinct recombination events within W cc11: A 8.4-kb recombinant region likely acquired from W cc22 including the sialic acid/glycosyl-transferase gene, csw resulted in a C→W change in capsular phenotype and a 13.7-kb recombinant segment likely acquired from Y cc23 lineage includes 4.5 kb of cps genes and 8.2 kb downstream of the cps cluster resulting in allelic changes in capsule translocation genes. A vast majority of W cc11 strains (497/524, 94.8%) retain both recombination events as evidenced by sharing identical or very closely related capsular allelic profiles. These data suggest that the W cc11 capsular switch involved two separate recombination events and that current global W cc11 meningococcal disease is caused by strains bearing this mosaic capsular switch. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Comparison of the landslide susceptibility models in Taipei Water Source Domain, Taiwan

NASA Astrophysics Data System (ADS)

WU, C. Y.; Yeh, Y. C.; Chou, T. H.

2017-12-01

Taipei Water Source Domain, locating at the southeast of Taipei Metropolis, is the main source of water resource in this region. Recently, the downstream turbidity often soared significantly during the typhoon period because of the upstream landslides. The landslide susceptibilities should be analysed to assess the influence zones caused by different rainfall events, and to ensure the abilities of this domain to serve enough and quality water resource. Generally, the landslide susceptibility models can be established based on either a long-term landslide inventory or a specified landslide event. Sometimes, there is no long-term landslide inventory in some areas. Thus, the event-based landslide susceptibility models are established widely. However, the inventory-based and event-based landslide susceptibility models may result in dissimilar susceptibility maps in the same area. So the purposes of this study were to compare the landslide susceptibility maps derived from the inventory-based and event-based models, and to interpret how to select a representative event to be included in the susceptibility model. The landslide inventory from Typhoon Tim in July, 1994 and Typhoon Soudelor in August, 2015 was collected, and used to establish the inventory-based landslide susceptibility model. The landslides caused by Typhoon Nari and rainfall data were used to establish the event-based model. The results indicated the high susceptibility slope-units were located at middle upstream Nan-Shih Stream basin.

Movement of resident rainbow trout transplanted below a barrier to anadromy

USGS Publications Warehouse

Wilzbach, Margaret A.; Ashenfelter, Mark J.; Ricker, Seth J.

2012-01-01

We tracked the movement of resident coastal rainbow trout Oncorhynchus mykiss irideus that were experimentally transplanted below a migration barrier in a northern California stream. In 2005 and 2006, age-1 and older rainbow trout were captured above a 5-m-high waterfall in Freshwater Creek and individually marked with passive integrated transponder tags. Otolith microchemistry confirmed that the above-barrier trout were the progeny of resident rather than anadromous parents, and genetic analysis indicated that the rainbow trout were introgressed with cutthroat trout O. clarkii. At each of three sampling events, half of the tagged individuals (n = 22 and 43 trout in 2005 and 2006, respectively) were released 5 km downstream from the waterfall (approximately 10 km upstream from tidewater), and an equal number of tagged individuals were released above the barrier. Tagged individuals were subsequently relocated with stationary and mobile antennae or recaptured in downstream migrant traps, or both, until tracking ceased in October 2007. Most transplanted individuals remained within a few hundred meters of their release location. Three individuals, including one rainbow trout released above the waterfall, were last detected in the tidally influenced lower creek. Two additional tagged individuals released above the barrier were found alive in below-barrier reaches and had presumably washed over the falls. Two of seven tagged rainbow trout captured in downstream migrant traps had smolted and one was a presmolt. The smoltification of at least some individuals, coupled with above-barrier "leakage" of fish downstream, suggests that above-barrier resident trout have the potential to exhibit migratory behavior and to enter breeding populations of steelhead (anadromous rainbow trout) within the basin.

The associations of interleukin-6 (IL-6) and downstream inflammatory markers with risk of cardiovascular disease: the Caerphilly Study.

PubMed

Patterson, Christopher C; Smith, Anne E; Yarnell, John W G; Rumley, Ann; Ben-Shlomo, Yoav; Lowe, Gordon D O

2010-04-01

Interleukin-6 (IL-6) is a key pro-inflammatory cytokine which mediates expression of several 'downstream' inflammatory markers and may play a role in atherothrombosis. However, it is not yet known whether IL-6 plays a role in mediating the associations of each marker with risk of coronary heart disease (CHD) or ischaemic stroke (IS). We examined the role of IL-6 and several "downstream" markers of inflammation (leucocyte counts, plasma and serum viscosity, fibrinogen, C-reactive protein, alpha1-antitrypsin and alpha2-macroglobulin) with risk of subsequent CHD, IS, and a combined endpoint (CHD/IS) in a population of British men. 2208 men aged 45-64 years were followed for a median of 13.4 years and 486 men had experienced a cardiovascular event. In age-adjusted analyses, most inflammatory markers were significantly associated with risk of CHD or CHD/IS, but for IS associations were weaker. On multivariable analyses, including conventional risk factors, associations of serum viscosity, alpha2-macroglobulin and leucocyte count became non-significant for CHD and CHD/IS, while no inflammatory marker retained a significant association with risk of IS. In contrast, IL-6 retained a significant association with CHD and CHD/IS and, after adjustment for IL-6, hazard ratios for downstream inflammatory markers were attenuated to non-significance. These findings suggest that IL-6 may play a role in mediating the associations of circulating inflammatory markers with risk of CHD in men. Further studies are required to assess whether this is also the case for risk of IS, and for CHD/IS in women. Copyright 2009 Elsevier Ireland Ltd. All rights reserved.

Dissection of Signaling Events Downstream of the c-Mpl Receptor in Murine Hematopoietic Stem Cells Via Motif-Engineered Chimeric Receptors.

PubMed

Saka, Koichiro; Lai, Chen-Yi; Nojima, Masanori; Kawahara, Masahiro; Otsu, Makoto; Nakauchi, Hiromitsu; Nagamune, Teruyuki

2018-02-01

Hematopoietic stem cells (HSCs) are a valuable resource in transplantation medicine. Cytokines are often used to culture HSCs aiming at better clinical outcomes through enhancement of HSC reconstitution capability. Roles for each signal molecule downstream of receptors in HSCs, however, remain puzzling due to complexity of the cytokine-signaling network. Engineered receptors that are non-responsive to endogenous cytokines represent an attractive tool for dissection of signaling events. We here tested a previously developed chimeric receptor (CR) system in primary murine HSCs, target cells that are indispensable for analysis of stem cell activity. Each CR contains tyrosine motifs that enable selective activation of signal molecules located downstream of the c-Mpl receptor upon stimulation by an artificial ligand. Signaling through a control CR with a wild-type c-Mpl cytoplasmic tail sufficed to enhance HSC proliferation and colony formation in cooperation with stem cell factor (SCF). Among a series of CRs, only one compatible with selective Stat5 activation showed similar positive effects. The HSCs maintained ex vivo in these environments retained long-term reconstitution ability following transplantation. This ability was also demonstrated in secondary recipients, indicating effective transmission of stem cell-supportive signals into HSCs via these artificial CRs during culture. Selective activation of Stat5 through CR ex vivo favored preservation of lymphoid potential in long-term reconstituting HSCs, but not of myeloid potential, exemplifying possible dissection of signals downstream of c-Mpl. These CR systems therefore offer a useful tool to scrutinize complex signaling pathways in HSCs.

Experimental study of the spill and vaporization of a volatile liquid.

PubMed

Bohl, Douglas; Jackson, Gregory

2007-02-09

Pool and vapor cloud characteristics of an acetone spill issuing from the downstream wall of a flow obstruction oriented perpendicular to a uniform flow were investigated experimentally. Data indicate that the spill event was largely governed by the temperature of the surface in relation to the boiling point of the spilled liquid. The free stream velocity (ranging from 0.75 to 3.0m/s) also impacted the spreading of the spill. Planar laser-induced fluorescence (PLIF) was used to measure acetone vapor concentrations during the transient pool spreading and vaporization in a window 60cm long by 50cm high and located downstream of the 16cm high obstruction. The recirculation region induced by the flow obstruction caused upstream transport of the acetone vapor along the spill surface, after which it was convected vertically along the obstruction wall before being entrained into the flow and convected downstream. The recirculating flow caused regions of vapor within the flammability limits to be localized near the flow obstruction. These regions moved into and out of the measurement plane by large three-dimensional flow structures. The flammable region of the evolved vapor cloud was observed to grow well past the downstream edge of the measurement domain. With decreasing wind speeds, both the mass of acetone vapor within the flammability limits and the total spill event time increased significantly. The data presented herein provides a basis for validating future spill models of hazardous chemical releases, where complex turbulent flow modeling must be coupled with spill spreading and vaporization dynamics.

Staged electrostatic precipitator

DOEpatents

Miller, Stanley J.; Almlie, Jay C.; Zhuang, Ye

2016-03-01

A device includes a chamber having an air inlet and an air outlet. The device includes a plurality of stages including at least a first stage adjacent a second stage. The plurality of stages are disposed in the chamber and each stage has a plurality of discharge electrodes disposed in an interior region and is bounded by an upstream baffle on an end proximate the air inlet and bounded by a downstream baffle on an end proximate the air outlet. Each stage has at least one sidewall between the upstream baffle and the downstream baffle. The sidewall is configured as a collection electrode and has a plurality of apertures disposed along a length between the upstream baffle and the downstream baffle. The upstream baffle of the first stage is positioned in staggered alignment relative to the upstream baffle of the second stage and the downstream baffle of the first stage are positioned in staggered alignment relative to the downstream baffle of the second stage.

Tie2 and Eph Receptor Tyrosine Kinase Activation and Signaling

PubMed Central

Barton, William A.; Dalton, Annamarie C.; Seegar, Tom C.M.; Himanen, Juha P.

2014-01-01

The Eph and Tie cell surface receptors mediate a variety of signaling events during development and in the adult organism. As other receptor tyrosine kinases, they are activated on binding of extracellular ligands and their catalytic activity is tightly regulated on multiple levels. The Eph and Tie receptors display some unique characteristics, including the requirement of ligand-induced receptor clustering for efficient signaling. Interestingly, both Ephs and Ties can mediate different, even opposite, biological effects depending on the specific ligand eliciting the response and on the cellular context. Here we discuss the structural features of these receptors, their interactions with various ligands, as well as functional implications for downstream signaling initiation. The Eph/ephrin structures are already well reviewed and we only provide a brief overview on the initial binding events. We go into more detail discussing the Tie-angiopoietin structures and recognition. PMID:24478383

Phospho-control of TGF-β superfamily signaling

PubMed Central

Wrighton, Katharine H; Lin, Xia; Feng, Xin-Hua

2010-01-01

Members of the transforming growth factor-β (TGF-β) family control a broad range of cellular responses in metazoan organisms via autocrine, paracrine, and endocrine modes. Thus, aberrant TGF-β signaling can play a key role in the pathogenesis of several diseases, including cancer. TGF-β signaling pathways are activated by a short phospho-cascade, from receptor phosphorylation to the subsequent phosphorylation and activation of downstream signal transducers called R-Smads. R-Smad phosphorylation state determines Smad complex assembly/disassembly, nuclear import/export, transcriptional activity and stability, and is thus the most critical event in TGF-β signaling. Dephosphorylation of R-Smads by specific phosphatases prevents or terminates TGF-β signaling, highlighting the need to consider Smad (de)phosphorylation as a tightly controlled and dynamic event. This article illustrates the essential roles of reversible phosphorylation in controlling the strength and duration of TGF-β signaling and the ensuing physiological responses. PMID:19114991

Organic matter loading by hippopotami causes subsidy overload resulting in downstream hypoxia and fish kills.

PubMed

Dutton, Christopher L; Subalusky, Amanda L; Hamilton, Stephen K; Rosi, Emma J; Post, David M

2018-05-16

Organic matter and nutrient loading into aquatic ecosystems affects ecosystem structure and function and can result in eutrophication and hypoxia. Hypoxia is often attributed to anthropogenic pollution and is not common in unpolluted rivers. Here we show that organic matter loading from hippopotami causes the repeated occurrence of hypoxia in the Mara River, East Africa. We documented 49 high flow events over 3 years that caused dissolved oxygen decreases, including 13 events resulting in hypoxia, and 9 fish kills over 5 years. Evidence from experiments and modeling demonstrates a strong mechanistic link between the flushing of hippo pools and decreased dissolved oxygen in the river. This phenomenon may have been more widespread throughout Africa before hippopotamus populations were severely reduced. Frequent hypoxia may be a natural part of tropical river ecosystem function, particularly in rivers impacted by large wildlife.

System and method for injecting fuel

DOEpatents

Uhm, Jong Ho; Johnson, Thomas Edward

2012-12-04

According to various embodiments, a system includes a staggered multi-nozzle assembly. The staggered multi-nozzle assembly includes a first fuel nozzle having a first axis and a first flow path extending to a first downstream end portion, wherein the first fuel nozzle has a first non-circular perimeter at the first downstream end portion. The staggered multi-nozzle assembly also includes a second fuel nozzle having a second axis and a second flow path extending to a second downstream end portion, wherein the first and second downstream end portions are axially offset from one another relative to the first and second axes. The staggered multi-nozzle assembly further includes a cap member disposed circumferentially about at least the first and second fuel nozzles to assemble the staggered multi-nozzle assembly.

Stormwater Infrastructure Effects on Urban Nitrogen Budgets

NASA Astrophysics Data System (ADS)

Hale, R. L.; Turnbull, L.; Earl, S.; Moratto, S.; Shorts, D.; Grimm, N. B.

2012-12-01

The effects of urbanization on downstream ecosystems, particularly due to changes in nutrient inputs and altered hydrology are well studied. Less is known, however, about nutrient transport and processing within urban watersheds. Previous research has focused on the roles of land cover and land use but drainage system design and configuration also are apt to play a significant role in controlling the transport of water and nutrients downstream. Furthermore, variability in drainage systems within and between cities may lead to differences in the effects of urbanization on downstream ecosystems over time and space. We established a nested stormwater sampling network with 10 watersheds ranging in size from 5 to 22,000 ha in the Indian Bend Wash watershed in Scottsdale, AZ. Small (< 200ha) watersheds had uniform land cover (medium-density residential) but were drained by a variety of stormwater infrastructure including surface runoff, pipes, natural or engineered washes, and retention basins. We quantified discharge and precipitation at the outflow of each subwatershed and collected stormwater and rainfall samples for analyses of dissolved nitrogen species and δ15N, δ18O and Δ17O isotopes of nitrate (NO3) over two years. We also measured potential denitrification rates in washes and retention basins within our sites, and collected soil and pavement samples to describe pools of N within our watersheds. We used these data in combination with literature data on soil N transformations to construct N budgets for each watershed for a single event and at annual scales. We found that stormwater infrastructure type strongly affects N retention. Watersheds with surface or pipe drainage were sources of N downstream, whereas watersheds drained by washes or retention basins retained 70-99% of N inputs in rainfall. Event scale N retention was strongly correlated with hydrologic connectivity, as measured by runoff coefficients. Differences in δ15N, δ18O, and Δ17O isotopes of NO3 suggested that watersheds with decreased hydrologic connectivity were more biogeochemically active, that is, exported NO3 had less of an atmospheric signal than did NO3 exported from piped watersheds. Overall, we find that stormwater infrastructure significantly alters hydrologic connectivity and that these changes in hydrology are driving patterns in N export and retention.

Ca2+ conduction by plant cyclic nucleotide gated channels and associated signaling components in pathogen defense signal transduction cascades.

PubMed

Ma, Wei; Berkowitz, Gerald A

2011-05-01

Ca(2+) elevation in the cytosol is an essential early event during pathogen response signaling cascades. However, the specific ion channels involved in Ca(2+) influx into plant cells, and how Ca(2+) signals are initiated and regulate downstream events during pathogen defense responses, are at present unclear. Plant cyclic nucleotide gated ion channels (CNGCs) provide a pathway for Ca(2+) conductance across the plasma membrane (PM) and facilitate cytosolic Ca(2+) elevation in response to pathogen signals. Recent studies indicate that the recognition of pathogens results in cyclic nucleotide production and the activation of CNGCs, which leads to downstream generation of pivotal signaling molecules (such as nitric oxide (NO)). Calmodulins (CaMs) and CaM-like proteins (CMLs) are also involved in this signaling, functioning as Ca(2+) sensors and mediating the synthesis of NO during the plant pathogen response signaling cascade. In this article, these and other pivotal signaling components downstream from the Ca(2+) signal, such as Ca(2+)-dependent protein kinases (CDPKs) and CaM-binding transcription activators (CAMTAs), are discussed in terms of their involvement in the pathogen response signal transduction cascade. © 2010 The Authors. New Phytologist © 2010 New Phytologist Trust.

ATM-Dependent Phosphorylation of All Three Members of the MRN Complex: From Sensor to Adaptor

PubMed Central

Lavin, Martin F.; Kozlov, Sergei; Gatei, Magtouf; Kijas, Amanda W.

2015-01-01

The recognition, signalling and repair of DNA double strand breaks (DSB) involves the participation of a multitude of proteins and post-translational events that ensure maintenance of genome integrity. Amongst the proteins involved are several which when mutated give rise to genetic disorders characterised by chromosomal abnormalities, cancer predisposition, neurodegeneration and other pathologies. ATM (mutated in ataxia-telangiectasia (A-T) and members of the Mre11/Rad50/Nbs1 (MRN complex) play key roles in this process. The MRN complex rapidly recognises and locates to DNA DSB where it acts to recruit and assist in ATM activation. ATM, in the company of several other DNA damage response proteins, in turn phosphorylates all three members of the MRN complex to initiate downstream signalling. While ATM has hundreds of substrates, members of the MRN complex play a pivotal role in mediating the downstream signalling events that give rise to cell cycle control, DNA repair and ultimately cell survival or apoptosis. Here we focus on the interplay between ATM and the MRN complex in initiating signaling of breaks and more specifically on the adaptor role of the MRN complex in mediating ATM signalling to downstream substrates to control different cellular processes. PMID:26512707

Edaravone alleviates Alzheimer’s disease-type pathologies and cognitive deficits

PubMed Central

Jiao, Shu-Sheng; Yao, Xiu-Qing; Liu, Yu-Hui; Wang, Qing-Hua; Zeng, Fan; Lu, Jian-Jun; Liu, Jia; Zhu, Chi; Shen, Lin-Lin; Liu, Cheng-Hui; Wang, Ye-Ran; Zeng, Gui-Hua; Parikh, Ankit; Chen, Jia; Liang, Chun-Rong; Xiang, Yang; Bu, Xian-Le; Deng, Juan; Li, Jing; Xu, Juan; Zeng, Yue-Qin; Xu, Xiang; Xu, Hai-Wei; Zhong, Jin-Hua; Zhou, Hua-Dong; Zhou, Xin-Fu; Wang, Yan-Jiang

2015-01-01

Alzheimer’s disease (AD) is one of most devastating diseases affecting elderly people. Amyloid-β (Aβ) accumulation and the downstream pathological events such as oxidative stress play critical roles in pathogenesis of AD. Lessons from failures of current clinical trials suggest that targeting multiple key pathways of the AD pathogenesis is necessary to halt the disease progression. Here we show that Edaravone, a free radical scavenger that is marketed for acute ischemic stroke, has a potent capacity of inhibiting Aβ aggregation and attenuating Aβ-induced oxidation in vitro. When given before or after the onset of Aβ deposition via i.p. injection, Edaravone substantially reduces Aβ deposition, alleviates oxidative stress, attenuates the downstream pathologies including Tau hyperphosphorylation, glial activation, neuroinflammation, neuronal loss, synaptic dysfunction, and rescues the behavioral deficits of APPswe/PS1 mice. Oral administration of Edaravone also ameliorates the AD-like pathologies and memory deficits of the mice. These findings suggest that Edaravone holds a promise as a therapeutic agent for AD by targeting multiple key pathways of the disease pathogenesis. PMID:25847999

Mutations in Fis1 disrupt orderly disposal of defective mitochondria

PubMed Central

Shen, Qinfang; Yamano, Koji; Head, Brian P.; Kawajiri, Sumihiro; Cheung, Jesmine T. M.; Wang, Chunxin; Cho, Jeong-Hoon; Hattori, Nobutaka; Youle, Richard J.; van der Bliek, Alexander M.

2014-01-01

Mitochondrial fission is mediated by the dynamin-related protein Drp1 in metazoans. Drp1 is recruited from the cytosol to mitochondria by the mitochondrial outer membrane protein Mff. A second mitochondrial outer membrane protein, named Fis1, was previously proposed as recruitment factor, but Fis1−/− cells have mild or no mitochondrial fission defects. Here we show that Fis1 is nevertheless part of the mitochondrial fission complex in metazoan cells. During the fission cycle, Drp1 first binds to Mff on the surface of mitochondria, followed by entry into a complex that includes Fis1 and endoplasmic reticulum (ER) proteins at the ER–mitochondrial interface. Mutations in Fis1 do not normally affect fission, but they can disrupt downstream degradation events when specific mitochondrial toxins are used to induce fission. The disruptions caused by mutations in Fis1 lead to an accumulation of large LC3 aggregates. We conclude that Fis1 can act in sequence with Mff at the ER–mitochondrial interface to couple stress-induced mitochondrial fission with downstream degradation processes. PMID:24196833

Shp-2 Is Dispensable for Establishing T Cell Exhaustion and for PD-1 Signaling In Vivo.

PubMed

Rota, Giorgia; Niogret, Charlène; Dang, Anh Thu; Barros, Cristina Ramon; Fonta, Nicolas Pierre; Alfei, Francesca; Morgado, Leonor; Zehn, Dietmar; Birchmeier, Walter; Vivier, Eric; Guarda, Greta

2018-04-03

In chronic infection and cancer, T cells acquire a dysfunctional state characterized by the expression of inhibitory receptors. In vitro studies implicated the phosphatase Shp-2 downstream of these receptors, including PD-1. However, whether Shp-2 is responsible in vivo for such dysfunctional responses remains elusive. To address this, we generated T cell-specific Shp-2-deficient mice. These mice did not show differences in controlling chronic viral infections. In this context, Shp-2-deleted CD8 + T lymphocytes expanded moderately better but were less polyfunctional than control cells. Mice with Shp-2-deficient T cells also showed no significant improvement in controlling immunogenic tumors and responded similarly to controls to α-PD-1 treatment. We therefore showed that Shp-2 is dispensable in T cells for globally establishing exhaustion and for PD-1 signaling in vivo. These results reveal the existence of redundant mechanisms downstream of inhibitory receptors and represent the foundation for defining these relevant molecular events. Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

Interpreting Beryllium-7 and Lead-210 fluxes and ratios for age dating fluvial sediments in Difficult Run Watershed, Virginia, USA

NASA Astrophysics Data System (ADS)

Karwan, D. L.; Pizzuto, J. E.; Skalak, K.; Benthem, A.

2016-12-01

The sources and transport of suspended sediments within watersheds of varying sizes remain an important area of study within the geosciences. Short term fallout radionuclides, such as Beryllium-7 (7Be) and Lead-210 (210Pb), and their ratios can be a valuable tool for gaining insight into suspended sediment transport dynamics. We use these techniques in combination with other sediment exchange and transport models to estimate residence and transport time of suspended sediment in nested reaches of the Difficult Run watershed (Virginia, USA) on timescales from storm events to centuries and longer. During several winter and spring 2015-2016 precipitation events, Beryllium-7 to excess Lead-210 ratios vary from 0.4 - 2.5 in direct channel precipitation and 0.2 - 1 on suspended sediment. Previously published age dating models would suggest that the suspended sediments were originally "tagged" by, or in contact with wet fallout of, by Beryllium7 fallout approximately 20-80 days before sampling. Sediments at the upstream reach (watershed size 14 km2) tend to be older ( 75 days), while sediments at the downstream reach (watershed size 117 km2) tend to be newer ( 20 days). We use multiple sediment transport models and hypothesize that fluvial sediments are tagged with direct channel precipitation between the upstream and downstream reach, explaining their apparently younger age. Our analysis includes error propagation as well as a comparison of radioisotope gamma analyses from different labs across multiple institutions.

System and method for reducing combustion dynamics and NO.sub.x in a combustor

DOEpatents

Uhm, Jong H.; Johnson, Thomas Edward

2015-11-20

A system for reducing combustion dynamics and NO.sub.x in a combustor includes a tube bundle that extends radially across at least a portion of the combustor, wherein the tube bundle comprises an upstream surface axially separated from a downstream surface. A shroud circumferentially surrounds the upstream and downstream surfaces. A plurality of tubes extends through the tube bundle from the upstream surface through the downstream surface, wherein the downstream surface is stepped to produce tubes having different lengths through the tube bundle. A method for reducing combustion dynamics and NO.sub.x in a combustor includes flowing a working fluid through a plurality of tubes radially arranged between an upstream surface and a downstream surface of an end cap that extends radially across at least a portion of the combustor, wherein the downstream surface is stepped.

Effects of episodic sediment supply on bedload transport rate in mountain rivers. Detecting debris flow activity using continuous monitoring

NASA Astrophysics Data System (ADS)

Uchida, Taro; Sakurai, Wataru; Iuchi, Takuma; Izumiyama, Hiroaki; Borgatti, Lisa; Marcato, Gianluca; Pasuto, Alessandro

2018-04-01

Monitoring of sediment transport from hillslopes to channel networks as a consequence of floods with suspended and bedload transport, hyperconcentrated flows, debris and mud flows is essential not only for scientific issues, but also for prevention and mitigation of natural disasters, i.e. for hazard assessment, land use planning and design of torrent control interventions. In steep, potentially unstable terrains, ground-based continuous monitoring of hillslope and hydrological processes is still highly localized and expensive, especially in terms of manpower. In recent years, new seismic and acoustic methods have been developed for continuous bedload monitoring in mountain rivers. Since downstream bedload transport rate is controlled by upstream sediment supply from tributary channels and bed-external sources, continuous bedload monitoring might be an effective tool for detecting the sediments mobilized by debris flow processes in the upper catchment and thus represent an indirect method to monitor slope instability processes at the catchment scale. However, there is poor information about the effects of episodic sediment supply from upstream bed-external sources on downstream bedload transport rate at a single flood time scale. We have examined the effects of sediment supply due to upstream debris flow events on downstream bedload transport rate along the Yotagiri River, central Japan. To do this, we have conducted continuous bedload observations using a hydrophone (Japanese pipe microphone) located 6.4 km downstream the lower end of a tributary affected by debris flows. Two debris flows occurred during the two-years-long observation period. As expected, bedload transport rate for a given flow depth showed to be larger after storms triggering debris flows. That is, although the magnitude of sediment supply from debris flows is not large, their effect on bedload is propagating >6 km downstream at a single flood time scale. This indicates that continuous bedload observations could be effective for detecting sediment supply as a consequence of debris flow events.

Spatio-temporal changes in river bank mass failures in the Lockyer Valley, Queensland, Australia

NASA Astrophysics Data System (ADS)

Thompson, Chris; Croke, Jacky; Grove, James; Khanal, Giri

2013-06-01

Wet-flow river bank failure processes are poorly understood relative to the more commonly studied processes of fluvial entrainment and gravity-induced mass failures. Using high resolution topographic data (LiDAR) and near coincident aerial photography, this study documents the downstream distribution of river bank mass failures which occurred as a result of a catastrophic flood in the Lockyer Valley in January 2011. In addition, this distribution is compared with wet flow mass failure features from previous large floods. The downstream analysis of these two temporal data sets indicated that they occur across a range of river lengths, catchment areas, bank heights and angles and do not appear to be scale-dependent or spatially restricted to certain downstream zones. The downstream trends of each bank failure distribution show limited spatial overlap with only 17% of wet flows common to both distributions. The modification of these features during the catastrophic flood of January 2011 also indicated that such features tend to form at some 'optimum' shape and show limited evidence of subsequent enlargement even when flow and energy conditions within the banks and channel were high. Elevation changes indicate that such features show evidence for infilling during subsequent floods. The preservation of these features in the landscape for a period of at least 150 years suggests that the seepage processes dominant in their initial formation appear to have limited role in their continuing enlargement over time. No evidence of gully extension or headwall retreat is evident. It is estimated that at least 12 inundation events would be required to fill these failures based on the average net elevation change recorded for the 2011 event. Existing conceptual models of downstream bank erosion process zones may need to consider a wider array of mass failure processes to accommodate for wet flow failures.

A framework for the case-specific assessment of Green Infrastructure in mitigating urban flood hazards

NASA Astrophysics Data System (ADS)

Schubert, Jochen E.; Burns, Matthew J.; Fletcher, Tim D.; Sanders, Brett F.

2017-10-01

This research outlines a framework for the case-specific assessment of Green Infrastructure (GI) performance in mitigating flood hazard in small urban catchments. The urban hydrologic modeling tool (MUSIC) is coupled with a fine resolution 2D hydrodynamic model (BreZo) to test to what extent retrofitting an urban watershed with GI, rainwater tanks and infiltration trenches in particular, can propagate flood management benefits downstream and support intuitive flood hazard maps useful for communicating and planning with communities. The hydrologic and hydraulic models are calibrated based on current catchment conditions, then modified to represent alternative GI scenarios including a complete lack of GI versus a full implementation of GI. Flow in the hydrologic/hydraulic models is forced using a range of synthetic rainfall events with annual exceedance probabilities (AEPs) between 1-63% and durations from 10 min to 24 h. Flood hazard benefits mapped by the framework include maximum flood depths and extents, flow intensity (m2/s), flood duration, and critical storm duration leading to maximum flood conditions. Application of the system to the Little Stringybark Creek (LSC) catchment shows that across the range of AEPs tested and for storm durations equal or less than 3 h, presently implemented GI reduces downstream flooded area on average by 29%, while a full implementation of GI would reduce downstream flooded area on average by 91%. A full implementation of GI could also lower maximum flow intensities by 83% on average, reducing the drowning hazard posed by urban streams and improving the potential for access by emergency responders. For storm durations longer than 3 h, a full implementation of GI lacks the capacity to retain the resulting rainfall depths and only reduces flooded area by 8% and flow intensity by 5.5%.

Quantifying changes in the contribution of upstream snow and glacier melt to downstream low flows in the River Rhine

NASA Astrophysics Data System (ADS)

Stahl, K.; Kohn, I.; Boehm, M.; Seibert, J.; Freudiger, D.; Gerlinger, K.; Weiler, M.

2016-12-01

Low flows impact river ecosystems and impair water use. In the mid- and downstream reaches of one of the largest rivers in Europe, the River Rhine, low flows can threaten a variety of ecosystem services and direct uses. Low flows in summer and fall are sustained by the snow and ice melt contribution from the glacierized mountain headwaters upstream. This study explores changes in the discharge components of rain, snowmelt and ice melt during extreme low flow events from a downstream perspective. Quantification of the discharge components is based on a novel method of runoff component tracking that was implemented into a model chain, consisting of the HBV model, which includes a glacier mass balance model allowing for areal glacier changes, for the headwaters and the distributed hydrological model LARSIM for the remaining Rhine basin. A transient model run at daily resolution was calibrated to glacier volume change, basin-wide snow cover and snow water equivalent and discharge variability at many gauging stations over the period 1901-2006. The analysis of the resulting discharge components revealed that over the course of the 20th Century, the loss of glacier volume and glacier area in the headwaters appears to have compensated an increasingly negative glacier mass balance, resulting in little long-term change to the ice melt component in summer streamflow - thus showing no clear `peak-water' trend. While the glacier ice melt component was less than two percent of the average annual discharge of the mid and lower reaches of the River Rhine, models suggest its fraction was much higher during extreme low flow events. The low flows of the summers of 1921, 1947, and 2003 were comprised of record daily ice melt fractions of more than one fifth of the daily discharge along the mid and lower reaches from Basel to the mouth. A scenario model run with suppressed glacier area change suggests that the ice melt discharge component would have doubled if the same meteorological event as in 2003 had occurred in the early 1900s when glacier areas were still much larger. Impacts on ecology and water use most likely would have also been less severe. The modeled changes in discharge components thus allow a quantification of the low flow hazard that may loom ahead as the glaciers continue to decline.

Practical management of everolimus-related toxicities in patients with advanced solid tumors.

PubMed

Grünwald, Viktor; Weikert, Steffen; Pavel, Marianne E; Hörsch, Dieter; Lüftner, Diana; Janni, Wolfgang; Geberth, Matthias; Weber, Matthias M

2013-01-01

Everolimus is an orally administered inhibitor of the mammalian target of rapamycin (mTOR), an intracellular protein kinase downstream of the phosphatidylinositol 3-kinase/AKT pathway involved in key components of tumorigenesis, including cell growth, proliferation, and angiogenesis. In the advanced cancer setting, based on favorable results from phase III trials, everolimus is indicated for the treatment of advanced renal cell carcinoma, advanced neuroendocrine tumors of pancreatic origin, and advanced hormone receptor-positive, human epidermal growth factor receptor 2-negative breast cancer. Additional oncology indications for everolimus include renal angiomyolipoma with tuberous sclerosis complex and subependymal giant-cell astrocytoma. Although it is generally well tolerated, with most adverse events of mild to moderate severity and manageable, everolimus exhibits a distinct adverse event profile that warrants guidance for proper diagnostic and medical management. This guidance is particularly important given the potential for widespread long-term use of everolimus. This review will focus on the most relevant toxicities associated with mTOR inhibitors and on their management. Practical treatment recommendations are presented for stomatitis, noninfectious pneumonitis, rash, selected metabolic abnormalities, and infections. Provided these events are rapidly identified and treated, the vast majority should resolve with minimal effect on treatment outcomes and patients' quality of life. Copyright © 2013 S. Karger AG, Basel.

Ca2+ signalling and early embryonic patterning during zebrafish development.

PubMed

Webb, Sarah E; Miller, Andrew L

2007-09-01

1. It has been proposed that Ca2+ signalling, in the form of pulses, waves and steady gradients, may play a crucial role in key pattern-forming events during early vertebrate development. 2. With reference to the embryo of the zebrafish (Danio rerio), herein we review the Ca2+ transients reported from the cleavage to segmentation periods. This time-window includes most of the major pattern-forming events of early development, which transform a single-cell zygote into a complex multicellular embryo with established primary germ layers and body axes. 3. Data are presented to support our proposal that intracellular Ca2+ waves are an essential feature of embryonic cytokinesis and that propagating intercellular Ca2+ waves (both long and short range) may play a crucial role in: (i) the establishment of the embryonic periderm and the coordination of cell movements during epiboly, convergence and extension; (ii) the establishment of the basic embryonic axes and germ layers; and (iii) definition of the morphological boundaries of specific tissue domains and embryonic structures, including future organ anlagen. 4. The potential downstream targets of these Ca2+ transients are also discussed, as well as how they may integrate with other pattern-forming signalling pathways known to modulate early developmental events.

Influences of high-flow events on a stream channel altered by construction of a highway bridge: A case study

USGS Publications Warehouse

Hedrick, Lara B.; Welsh, Stuart A.; Anderson, James T.

2009-01-01

Impacts of highway construction on streams in the central Appalachians are a growing concern as new roads are created to promote tourism and economic development in the area. Alterations to the streambed of a first-order stream, Sauerkraut Run, Hardy County, WV, during construction of a highway overpass included placement and removal of a temporary culvert, straightening and regrading of a section of stream channel, and armourment of a bank with a reinforced gravel berm. We surveyed longitudinal profiles and cross sections in a reference reach and the altered reach of Sauerkraut Run from 2003 through 2007 to measure physical changes in the streambed. During the four-year period, three high-flow events changed the streambed downstream of construction including channel widening and aggradation and then degradation of the streambed. Upstream of construction, at a reinforced gravel berm, bank erosion was documented. The reference section remained relatively unchanged. Knowledge gained by documenting channel changes in response to natural and anthropogenic variables can be useful for managers and engineers involved in highway construction projects.

Characterization of nutrients and fecal indicator bacteria at a concentrated swine feeding operation in Wake County, North Carolina, 2009-2011

USGS Publications Warehouse

Harden, Stephen L.; Rogers, Shane W.; Jahne, Michael A.; Shaffer, Carrie E.; Smith, Douglas G.

2012-01-01

Study sites were sampled for laboratory analysis of nutrients, total suspended solids (TSS), and (or) fecal indicator bacteria (FIB). Nutrient analyses included measurement of dissolved ammonia, total and dissolved ammonia + organic nitrogen, dissolved nitrate + nitrite, dissolved orthophosphate, and total phosphorus. The FIB analyses included measurement of Escherichia coli and enterococci. Samples of wastewater at the swine facility were collected from a pipe outfall from the swine housing units, two storage lagoons, and the spray fields for analysis of nutrients, TSS, and FIB. Soil samples collected from a spray field were analyzed for FIB. Monitoring locations were established for collecting discharge and water-quality data during storm events at three in-field runoff sites and two sites on the headwater stream (one upstream and one downstream) next to the swine facility. Stormflow samples at the five monitoring locations were collected for four storm events during 2009 to 2010 and analyzed for nutrients, TSS, and FIB. Monthly water samples also were collected during base-flow conditions at all four stream sites for laboratory analysis of nutrients, TSS, and (or) FIB.

Water quality effects of herded stream crossings by domestic sheep bands.

PubMed

Clark, Patrick E; Moffet, Corey A; Lewis, Gregory S; Seyfried, Mark S; Hardegree, Stuart P; Pierson, Fredrick B

2012-01-01

Livestock impacts on total suspended solids (TSS) and pathogen (e.g., ) levels in rangeland streams are a serious concern worldwide. Herded stream crossings by domestic sheep () are periodic, necessary managerial events on high-elevation rangelands, but their impacts on stream water quality are largely unknown. We evaluated the effects of herded, one-way crossings by sheep bands (about 2000 individuals) on TSS and concentration and load responses in downstream waters. Crossing trials were conducted during the summers of 2005 and 2006 on two reaches within each of three perennial streams in the Centennial Mountains of eastern Idaho and southwestern Montana. Water samples were collected at 2-min intervals at an upstream background station and at stations 25, 100, 500, and 1500 m downstream just before and during each crossing trial. Crossings produced substantial increases in TSS and concentrations and loads downstream, but these concentration increases were localized and short lived. Maximum TSS concentration was highest 25 m downstream, declined as a function of downstream distance, and at 500 m downstream was similar to background. Post-peak TSS concentrations at all downstream stations decreased to <25 mg L within 24 to 48 min after reaching their maxima. Findings for concentration and load responses were similar to that of TSS but less clear cut. Stream-crossing sheep do affect water quality; therefore, producers and resource managers should continue to evaluate the efficacy of herdsmanship techniques for reducing water quality impact. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Downstream movement of mature eels in a hydroelectric reservoir in New Zealand

USGS Publications Warehouse

Watene, E.M.; Boubee, J.A.T.; Haro, A.

2003-01-01

This study investigates the behavior of migrant eels as they approached the Patea hydroelectric dam on the West Coast of the North Island, New Zealand. Seventeen mature migrant eels (870-1,240 mm; 2,000-6,380 g) were implanted with coded acoustic transmitters and released. Their movements in the reservoir were monitored for 14 months with stationary data logging and manual tracking receivers. The downstream migration of sexually maturing eels was found to occur mainly at night, usually during, or immediately after, rainfall events. Eels tended to travel at the surface, within the upper 4 m of the water column, at speeds ranging from 16 to 89 cm/s. Upon reaching the headrace, eels typically spent time searching, presumably for an unobstructed downstream route. In order to aid downstream passage of eels at the Patea Dam, power station operators began spillway opening trials during peak migration periods. Although this allowed some migrant eels to safely pass over the dam, information on the relative effectiveness and cost of this method over other possible mitigation methods is still required. ?? Copyright by the American Fisheries Society 2003.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hughes, Michael John; McConnaughhay, Johnie Franklin

A combustor includes a tube bundle that extends radially across at least a portion of the combustor. The tube bundle includes an upstream surface axially separated from a downstream surface, and a plurality of tubes extend from the upstream surface through the downstream surface to provide fluid communication through the tube bundle. A barrier extends radially inside the tube bundle between the upstream and downstream surfaces, and a baffle extends axially inside the tube bundle between the upstream surface and the barrier.

System for reducing combustion dynamics and NO.sub.x in a combustor

DOEpatents

Uhm, Jong Ho; Ziminsky, Willy Steve; Johnson, Thomas Edward; Hughes, Michael John; York, William David

2016-05-31

A combustor includes an end cap that extends radially across at least a portion of the combustor. The end cap includes an upstream surface axially separated from a downstream surface. A plurality of tubes extend from the upstream surface through the downstream surface of the end cap to provide fluid communication through the end cap. Each tube in a first set of the plurality of tubes has an inlet proximate to the upstream surface and an outlet downstream from the downstream surface. Each outlet has a first portion that extends a different axial distance from the inlet than a second portion.

A Drug Safety Rating System Based on Postmarketing Costs Associated with Adverse Events and Patient Outcomes.

PubMed

Hoffman, Keith B; Dimbil, Mo; Kyle, Robert F; Tatonetti, Nicholas P; Erdman, Colin B; Demakas, Andrea; Chen, Dingguo; Overstreet, Brian M

2015-12-01

Given the multiple limitations associated with relatively homogeneous preapproval clinical trials, inadequate data disclosures, slow reaction times from regulatory bodies, and deep-rooted bias against disclosing and publishing negative results, there is an acute need for the development of analytics that reflect drug safety in heterogeneous, real-world populations. To develop a drug safety statistic that estimates downstream medical costs associated with serious adverse events (AEs) and unfavorable patient outcomes associated with the use of 706 FDA-approved drugs. All primary suspect case reports for each drug were collected from the FDA's Adverse Event Reporting System database (FAERS) from 2010-2014. The Medical Dictionary for Regulatory Activities (MedDRA) was used to code serious AEs and outcomes, which were tallied for each case report. Medical costs associated with AEs and poor patient outcomes were derived from Agency for Healthcare Research and Quality (AHRQ) survey data, and their corresponding ICD-9-CM codes were mapped to MedDRA terms. Nonserious AEs and outcomes were not included. For each case report, either the highest AE cost or, if no eligible AE was listed, the highest outcome cost was used. All costed cases were aggregated for each drug and divided by the number of patients exposed to obtain a downstream estimated direct medical cost burden per exposure. Each drug was assigned a corresponding 1-100 point total. The 706 drugs showed an exponential distribution of downstream costs, and the data were transformed using the natural log to approximate a normal distribution. The minimum score was 8.29, and the maximum score was 99.25, with a mean of 44.32. Drugs with the highest individual scores tended to be kinase inhibitors, thalidomide analogs, and endothelin receptor antagonists. When scores were analyzed across Established Pharmacologic Class (EPC), the kinase inhibitor and endothelin receptor antagonist classes had the highest total. However, other EPCs with median scores of 75 and above included hepatitis C virus NS3/4A protease inhibitor, recombinant human interferon beta, vascular endothelial growth factor-directed antibody, and tumor necrosis factor blocker. When Anatomical Therapeutic Chemical classifications were analyzed, antineoplastic drugs were outliers with approximately 80% of their individual scores 60 and above, while approximately 20%-30% of blood and anti-infective drugs had scores of 60 and above. Within-drug class results served to differentiate similar drugs. For example, 6 serotonin reuptake inhibitors had a score range of 35 to 53. This scoring system is based on estimated direct medical costs associated with postmarketing AEs and poor patient outcomes and thereby helps fill a large information gap regarding drug safety in real-world patient populations.

75 FR 31361 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-03

... source(s) elevation ground [caret] Elevation Communities affected in meters (MSL) Effective Modified... meter. ** BFEs to be changed include the listed downstream and upstream BFEs, and include BFEs located... Sea Level, rounded to the nearest 0.1 meter. ** BFEs to be changed include the listed downstream and...

Persistence of Episodic Extreme Events: Sustained Colluvial Contributions of Fine Sediment to Vermont Rivers Post-Irene

NASA Astrophysics Data System (ADS)

Dethier, E.; Magilligan, F. J.; Renshaw, C. E.; Sinclair, D.

2014-12-01

Tropical Storm Irene generated devastating floods in New England in 2011, causing more than $500 million of damage. In intervening years, many geomorphic signs of disturbance have attenuated, suggesting that impacts may be ephemeral. Yet persistent impact continues: channel-proximal landslide scars linger as point sources of fine sediment 3 yrs post-Irene. We evaluate the legacy of this major disturbance while also testing conceptual models of hillslope-channel connectivity and subsequent downstream sediment routing. We measure sustained landslide erosion by comparing DEMs generated by a Terrestrial Laser Scanner and trace sediment mobility using in-channel measurements of embeddedness, sediment concentration, and fallout radionuclide activity. We augmented detailed temporal sampling of an 850 m2 landslide along a 2nd-order stream with a spatially robust summer 2014 field campaign, scanning an additional 12 landslides. The initially sampled landslide eroded 250 m3 of sediment between fall 2013 and May 2014, averaging 0.3 m of erosion with nearly all erosion occurring during a two-week spring snowmelt. Landslide sediments had high measured 7Be activity (t1/2=53.4 d), caused by subaerial exposure; sediment collected downstream of the landslide had higher 7Be activity than that collected upstream, suggesting landslide provenance. Channel sediment upstream of the landslide had remained in the channel long enough for 7Be to decay below detectable activity. Embeddedness, a measure of fine sediment on a channel bed, was higher downstream of the landslide than upstream. Remote sensing reveals >50 similar landslides within the White River alone, and hundreds more in Vermont. Thus, landslide scar inputs may continue to influence the regional fine sediment budget. Ongoing successive scans in multiple watersheds show erosion continues in summer, an observation corroborated by elevated suspended sediment concentrations downstream of landslides after rain events. Summertime erosion has generally been low, but one extreme storm triggered >4000 m3 of erosion on a 3500 m2 landslide along the 5th-order Williams River, averaging 1.3 m erosion across the landslide. Understanding the loci of affected reaches and the magnitude of the continued effect is critical in assessing the long-term legacy of extreme events.

River channel sensitivity to change in the context of human activities and natural factors: an 80-year record of channel morphodynamics on the lower Santa Clara River, Ventura County, California

NASA Astrophysics Data System (ADS)

Downs, P. W.; Dusterhoff, S. R.; Sears, W. A.

2010-12-01

River channel adjustments arise from the application of numerous catchment-based stressors operating at different space and time scales. Natural stressors include the impact of climatic phenomena and their inheritance; human stressors include both direct and indirect factors whose impacts have grown in magnitude and intensity during the Anthropocene, especially since about 1945. Consequently, the sensitivity of river channel morphodynamics is likely to have changed also, with implications for landform understanding and river management. Reconstructing channel morphodynamics during the Anthropocene requires interpreting multiple historical and secondary data sources to document changes at sufficient (i.e., reach-scale) resolution: for the 60-km lower Santa Clara River (LSCR), Ventura County, California, we used flow, sediment and precipitation records, repeat aerial photographs, LiDAR data, repeat topographic surveys, in-channel vegetation data, field observations, numerical modeling of high flow events, and narrative accounts. The catchment historical context since European-American settlement includes periods dominated by ranching and colonization (ca.1820-1890), irrigations and diversions (ca.1890-1955), dams and river modifications (1955-1990), and urban population growth (1990-present). Natural stressors were investigated based on the correlation of instantaneous flood peaks with annual rainfall records in this semi-arid setting. Successful prediction of the majority of gauged floods since about 1950 allows a flood sequence to be reconstructed back to 1873. Floods are clustered and of considerably greater magnitude in El Nino years of the El Nino-Southern Oscillation. The great majority of sediment transport thus occurs in El Nino years so that the dominant discharge is the largest discharge on record, in contrast to humid-region alluvial rivers. Responding to these stressors, the average width of the active channel bed has become narrower by almost 50% (1938-2005), with downstream reaches losing their responsiveness to flood events over time, in contrast to the middle reaches. The channel bed has incised on average 0.7 m from 1949-2005, again with a strong contrast between the downstream reaches (average incision 2.4 m) and middle reaches (no incision). Overall, catchment historical disturbances to the LSCR consist of numerous ‘pulse’ disturbances related to sediment delivery during clustered flood events, and following wildfire and earthquakes, at least five human-caused ‘press’ disturbances and two human ‘pulse’ disturbances. The end product includes several ‘natural’ reaches that are highly responsive but resilient to flood events, and numerous disequilibrium lower reaches disconnected from this floodplain and with high potential sensitivity held in check by force. Long-term approaches to hazard management should consider vulnerability modification approaches.

Envelope conformational changes induced by human immunodeficiency virus type 1 attachment inhibitors prevent CD4 binding and downstream entry events.

PubMed

Ho, Hsu-Tso; Fan, Li; Nowicka-Sans, Beata; McAuliffe, Brian; Li, Chang-Ben; Yamanaka, Gregory; Zhou, Nannan; Fang, Hua; Dicker, Ira; Dalterio, Richard; Gong, Yi-Fei; Wang, Tao; Yin, Zhiwei; Ueda, Yasutsugu; Matiskella, John; Kadow, John; Clapham, Paul; Robinson, James; Colonno, Richard; Lin, Pin-Fang

2006-04-01

BMS-488043 is a small-molecule human immunodeficiency virus type 1 (HIV-1) CD4 attachment inhibitor with demonstrated clinical efficacy. The compound inhibits soluble CD4 (sCD4) binding to the 11 distinct HIV envelope gp120 proteins surveyed. Binding of BMS-488043 and that of sCD4 to gp120 are mutually exclusive, since increased concentrations of one can completely block the binding of the other without affecting the maximal gp120 binding capacity. Similarly, BMS-488043 inhibited virion envelope trimers from binding to sCD4-immunoglobulin G (IgG), with decreasing inhibition as the sCD4-IgG concentration increased, and BMS-488043 blocked the sCD4-induced exposure of the gp41 groove in virions. In both virion binding assays, BMS-488043 was active only when added prior to sCD4. Collectively, these results indicate that obstruction of gp120-sCD4 interactions is the primary inhibition mechanism of this compound and that compound interaction with envelope must precede CD4 binding. By three independent approaches, BMS-488043 was further shown to induce conformational changes within gp120 in both the CD4 and CCR5 binding regions. These changes likely prevent gp120-CD4 interactions and downstream entry events. However, BMS-488043 could only partially inhibit CD4 binding to an HIV variant containing a specific envelope truncation and altered gp120 conformation, despite effectively inhibiting the pseudotyped virus infection. Taken together, BMS-488043 inhibits viral entry primarily through altering the envelope conformation and preventing CD4 binding, and other downstream entry events could also be inhibited as a result of these induced conformational changes.

Evolving therapeutic strategies for Duchenne muscular dystrophy: targeting downstream events.

PubMed

Tidball, James G; Wehling-Henricks, Michelle

2004-12-01

Duchenne muscular dystrophy (DMD) is a progressive, lethal, muscle wasting disease that affects 1 of 3500 boys born worldwide. The disease results from mutation of the dystrophin gene that encodes a cytoskeletal protein associated with the muscle cell membrane. Although gene therapy will likely provide the cure for DMD, it remains on the distant horizon, emphasizing the need for more rapid development of palliative treatments that build on improved understanding of the complex pathology of dystrophin deficiency. In this review, we have focused on therapeutic strategies that target downstream events in the pathologic progression of DMD. Much of this work has been developed initially using the dystrophin-deficient mdx mouse to explore basic features of the pathophysiology of dystrophin deficiency and to test potential therapeutic interventions to slow, reverse, or compensate for functional losses that occur in muscular dystrophy. In some cases, the initial findings in the mdx model have led to clinical treatments for DMD boys that have produced improvements in muscle function and quality of life. Many of these investigations have concerned interventions that can affect protein balance in muscle, by inhibiting specific proteases implicated in the DMD pathology, or by providing anabolic factors or depleting catabolic factors that can contribute to muscle wasting. Other investigations have exploited the use of anti-inflammatory agents that can reduce the contribution of leukocytes to promoting secondary damage to dystrophic muscle. A third general strategy is designed to increase the regenerative capacity of dystrophic muscle and thereby help retain functional muscle mass. Each of these general approaches to slowing the pathology of dystrophin deficiency has yielded encouragement and suggests that targeting downstream events in dystrophinopathy can yield worthwhile, functional improvements in DMD.

Factors Affecting Source-Water Quality after Disturbance of Forests by Wildfire

NASA Astrophysics Data System (ADS)

Murphy, S. F.; Martin, D. A.; McCleskey, R. B.; Writer, J. H.

2015-12-01

Forests yield high-quality water supplies to communities throughout the world, in part because forest cover reduces flooding and the consequent transport of suspended and dissolved constituents to surface water. Disturbance by wildfire reduces or eliminates forest cover, leaving watersheds susceptible to increased surface runoff during storms and reduced ability to retain contaminants. We assessed water-quality response to hydrologic events for three years after a wildfire in the Fourmile Creek Watershed, near Boulder, Colorado, and found that hydrologic and geochemical responses downstream of a burned area were primarily driven by small, brief convective storms that had relatively high, but not unusual, rainfall intensity. Total suspended sediment, dissolved organic carbon, nitrate, and manganese concentrations were 10-156 times higher downstream of a burned area compared to upstream, and water quality was sufficiently impaired to pose water-treatment concerns. The response in both concentration and yield of water-quality constituents differed depending on source availability and dominant watershed processes controlling the constituent. For example, while all constituent concentrations were highest during storm events, annual sediment yields downstream of the burned area were controlled by storm events and subsequent mobilization, whereas dissolved organic carbon yields were more dependent on spring runoff from upstream areas. The watershed response was affected by a legacy of historical disturbance: the watershed had been recovering from extensive disturbance by mining, railroad and road development, logging, and fires in the late 19th and early 20th centuries, and we observed extensive erosion of mine waste in response to these summer storms. Therefore, both storm characteristics and historical disturbance in a burned watershed must be considered when evaluating the role of wildfire on water quality.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guidarelli, Andrea; Fiorani, Mara; Carloni, Silvia

We herein report the results from a comparative study of arsenite toxicity in respiration-proficient (RP) and -deficient (RD) U937 cells. An initial characterization of these cells led to the demonstration that the respiration-deficient phenotype is not associated with apparent changes in mitochondrial mass and membrane potential. In addition, similar levels of superoxide (O{sub 2}{sup .-}) were generated by RP and RD cells in response to stimuli specifically triggering respiratory chain-independent mitochondrial mechanisms or extramitochondrial, NADPH-oxidase dependent, mechanisms. At the concentration of 2.5 μM, arsenite elicited selective formation of O{sub 2}{sup .-} in the respiratory chain of RP cells, with hardlymore » any contribution of the above mechanisms. Under these conditions, O{sub 2}{sup .-} triggered downstream events leading to endoplasmic reticulum (ER) stress, autophagy and apoptosis. RD cells challenged with similar levels of arsenite failed to generate O{sub 2}{sup .-} because of the lack of a functional respiratory chain and were therefore resistant to the toxic effects mediated by the metalloid. Their resistance, however, was lost after exposure to four fold greater concentrations of arsenite, coincidentally with the release of O{sub 2}{sup .-} mediated by NADPH oxidase. Interestingly, extramitochondrial O{sub 2}{sup .-} triggered the same downstream events and an identical mode of death previously observed in RP cells. Taken together, the results obtained in this study indicate that arsenite toxicity is strictly dependent on O{sub 2}{sup .-} availability that, regardless of whether generated in the mitochondrial or extramitochondrial compartments, triggers similar downstream events leading to ER stress, autophagy and apoptosis. - Highlights: • Mitochondrial superoxide mediates arsenite toxicity in respiration-proficient cells. • NADPH-derived superoxide mediates arsenite toxicity in respiration-deficient cells. • Arsenite causes apoptosis in respiration-proficient and -deficient cells. • Apoptosis is in both circumstances associated with ER stress and autophagy.« less

Insights from analyzing and modelling cascading multi-lake outburst flood events in the Santa Cruz Valley (Cordillera Blanca, Perú)

NASA Astrophysics Data System (ADS)

Emmer, Adam; Mergili, Martin; Juřicová, Anna; Cochachin, Alejo; Huggel, Christian

2016-04-01

Since the end of Little Ice Age, the Cordillera Blanca of Perú has experienced tens of lake outburst floods (LOFs), resulting in the loss of thousands of lives and significant material damages. Most commonly involving glacial lakes, such events are often directly or indirectly related to glacier retreat. Here we analyze an event on 8th February 2012 involving four lakes and affecting two valleys (Santa Cruz and Artizón) in the northern part of the Cordillera Blanca. Using the combination of field data, satellite images, digital elevation model (DEM) and GIS-based modelling approaches, the main objectives are: (i) to better understand complex multi-lake outburst flood and related foregoing and induced geomorphological processes; and (ii) to evaluate and discuss the suitability, potentials and limitations of the r.avaflow model for modelling such complex process chains. Analyzing field geomorphological evidence and remotely-sensed images, we reconstruct the event as follows: a landslide from the recently deglaciated left lateral moraine of Lake Artizón Alto (4 639 m a.s.l.), characterized by steep slopes and a height of more than 200 m produced a displacement wave which overtopped the bedrock dam of the lake. The resulting flood wave breached the dam of the downstream moraine-/landslide-dammed Lake Artizón Bajo (4 477 m a.s.l.), decreasing the lake level by 10 m and releasing 3 x 105 m3 of water. Significant amounts of material were eroded from the steeper parts of the Artizón Valley (mean slope >15°) and deposited further downstream in the flatter part of the Santa Cruz Valley (mean slope <2°; confluence of the two valleys at 3 985 m a.s.l.). The flood affected two debris cone-dammed lakes (Jatuncocha and Ichiccocha) in the Santa Cruz Valley. Some minor damages to the dam of Lake Jatuncocha were documented. Geomprohological evidence of the event was observed more than 20 km downstream from Lake Artizón Alto. The described multi-LOF event was employed as a particularly challenging test case for the currently developed, GIS-based two-phase dynamic mass flow model r.avaflow. Whilst the test results are very promising, lessons learned for r.avaflow model are the need for (i) an improved concept to determine the flow boundaries; and (ii) thorough parameter tests. High demands on the resolution and quality of the DEM are revealed. From our event and modelling analysis we conclude the following: mass movements in the headwaters of hydrologically connected lake and river systems may affect the catchment in complex and cascading ways. Flood and mass flow magnitudes can be both intensified or attenuated along the pathway. Geomorphological analysis and related modelling efforts may elucidate the related hazards as a basis to reduce the associated risks to downstream communities and infrastructures. Keywords: cascading processes, dam failure, glacial lake outburst flood (GLOF), high-mountain lakes, r.avaflow

Glaciers, Glacial lakes and Glacial Lake Outburst Floods in the Koshi Basin

NASA Astrophysics Data System (ADS)

Shrestha, F.; Gao, X.; Khanal, N. R.; Maharjan, S. B.; Bajracharya, S. R.; Shrestha, R. B.; Lizong, W.; Mool, P. K.

2016-12-01

Glacier is a vital water resources for mountain communities. Recession in glacier area either increased the glacial lake size or develop a new lake. The consequences of these changes in lake has become one of the major issue in the management of GLOF risk. This paper presents the distribution of, and changes in, glaciers, glacial lakes in the Koshi basin and also looks at past GLOF events that have occurred in the basin and their distance of impact. Data on the number of glaciers and glacial lakes and their areas were generated for the years 1977, 1990, 2000, and 2010 using Landsat images. The study revealed that there were a total of 845 glaciers (Nepal side) and 2,168 glacial lakes (Nepal and China side) with a total area of 1,103 km2 and 127.608 km2 in 2010. The number of glacier increased by 15% (109) and area decreased by 26% (396 km2) over 33 years. In case of glacier lakes, the number and area increased from 1,160 to 2,168 and from 94.444 km2 to 127.608 km2 during 33 years with an overall growth rates of 86.9% and 35.1%. A large number of glacial lakes are small in size (≤ 0.1 km2). End moraine dammed lakes with area ≥ 0.1 km2 were selected to analyse the change characteristics of glacial lakes. The results show that there were 134 lakes ≥ 0.1 km2 in 2010; these lakes had a total area of 43.06 km2 in 1997, increased to 64.35 km2 in 2010. The distribution of lakes on the north side of the Himalayas (in China) was three times higher than on the south side of the Himalayas (in Nepal). Comparing the mean growth rate in area and length for the 33 years, the growth rate on the north side was found to be a little slower than that on the south side. This relationship did not hold true for length change in the different periods. The study identified 42 rapidly growing large lakes that are dangerous in terms of GLOF risk. In the past, 18 GLOF events have been reported. The downstream distance impacted by those events was up to 90 km. Among them, 13 GLOF events had local effects less than 40 km downstream from the lake and the remaining had long distance downstream impacts. Some of the GLOF events that occurred on the north side in China had impacts far downstream in Nepal. Hence, the intensive monitoring of glacial lakes, modelling of outburst floods and vulnerability assessment, and capacity building for GLOF risk management are recommended to manage and mitigate these risk.

Characterization of pulsed flow attenuation on a regulated montane river

NASA Astrophysics Data System (ADS)

Fong, C. S.; Yarnell, S. M.; Fleenor, W. E.; Viers, J. H.

2013-12-01

A major benefit of hydropower is its ability to respond quickly to fluctuating electrical loads. However, the sharp changes in discharge caused by this practice have detrimental environmental effects downstream. This study investigated the effects of hydrograph shape on attenuation of regulated pulsed flow events by first categorizing, then modeling the downstream movement of representative pulses on the upper Tuolumne River below Holm Powerhouse in the Sierra Nevada mountains of California. This system was managed by a public utility and produced flow pulses primarily for hydroelectricity generation and/or whitewater recreation. Operations were highly influenced by a system-wide "Water First" policy, which prioritized drinking water supply and quality over other beneficial uses. Pulses were therefore associated with a spectrum of time scales, from predetermined schedules decided far in advance to hydropeaking operations responding to real-time demands. We extracted underlying hydrograph shape patterns using principal component analysis on individual pulsed flow events released from 1988-2012 (n=4439). From principal component loadings, six shape categories were determined: rectangular, front-step, back-step, goalpost, centered tower, and other. The rectangular and stepped shapes were the most frequent, composing 62% and 24% of total events, respectively. The rectangular shape was often produced by 'standard' hydropeaking or recreational releases, while the stepped shapes were often used for water conservation or were recreational flows bordered by periods of electricity generation. The stepped shape increased in occurrence after the "Water First" policy took effect in 1993 and dominated two drier years (2007 and 2009). After categorization by shape, magnitude and durational indices were used to fabricate representative pulsed flow events. Attenuation of these representative pulses was then modeled using a 1D hydraulic model of 42 river km prepared in HEC-RAS. As no operational measures or physical structures existed within the system to counter the adverse effects of pulsed flow events, natural attenuation was the only potential major mitigation agent. However, model results demonstrated a clear durational threshold for representative pulses (~ 3-5 hrs) over which the degree of attenuation of ramping rates and peak discharge approached a limit. These thresholds were unique to the study reach and were dependent upon river morphology, bed characteristics, and flow rates. Increasing baseflows did not necessarily increase attenuation of pulses, most likely due to minimal increases in bed friction forces in this fairly steep and confined channel. Simulations of front and back-step representative pulses showed trade-offs between attenuation of peak magnitudes and steepness of ramping rates. Finally, a range of rising ramping rates were shown to steepen downstream above initial rates due to the study reach's channel morphology. Reshaping pulses to be more ecologically benign at all points downstream was infeasible if the system was required to maintain current electricity production and recreational service levels.

Application of Signaling Pathway-Based Adverse Outcome Pathways and High Throughput Toxicokinetic-PBPK for Developmental Cardiac Malformations

EPA Science Inventory

Associating putative molecular initiating events (MIE) with downstream cell signaling pathways and modeling fetal exposure kinetics is an important challenge for integration in developmental systems toxicology. Here, we describe an integrative systems toxicology model for develop...

Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events

PubMed Central

Ashouri, Arghavan; Sayin, Volkan I.; Van den Eynden, Jimmy; Singh, Simranjit X.; Papagiannakopoulos, Thales; Larsson, Erik

2016-01-01

Thousands of long non-coding RNAs (lncRNAs) lie interspersed with coding genes across the genome, and a small subset has been implicated as downstream effectors in oncogenic pathways. Here we make use of transcriptome and exome sequencing data from thousands of tumours across 19 cancer types, to identify lncRNAs that are induced or repressed in relation to somatic mutations in key oncogenic driver genes. Our screen confirms known coding and non-coding effectors and also associates many new lncRNAs to relevant pathways. The associations are often highly reproducible across cancer types, and while many lncRNAs are co-expressed with their protein-coding hosts or neighbours, some are intergenic and independent. We highlight lncRNAs with possible functions downstream of the tumour suppressor TP53 and the master antioxidant transcription factor NFE2L2. Our study provides a comprehensive overview of lncRNA transcriptional alterations in relation to key driver mutational events in human cancers. PMID:28959951

Convergent and Divergent Signaling in PAMP-Triggered Immunity and Effector-Triggered Immunity.

PubMed

Peng, Yujun; van Wersch, Rowan; Zhang, Yuelin

2018-04-01

Plants use diverse immune receptors to sense pathogen attacks. Recognition of pathogen-associated molecular patterns (PAMPs) by pattern recognition receptors localized on the plasma membrane leads to PAMP-triggered immunity (PTI). Detection of pathogen effectors by intracellular or plasma membrane-localized immune receptors results in effector-triggered immunity (ETI). Despite the large variations in the magnitude and duration of immune responses triggered by different PAMPs or pathogen effectors during PTI and ETI, plasma membrane-localized immune receptors activate similar downstream molecular events such as mitogen-activated protein kinase activation, oxidative burst, ion influx, and increased biosynthesis of plant defense hormones, indicating that defense signals initiated at the plasma membrane converge at later points. On the other hand, activation of ETI by immune receptors localized to the nucleus appears to be more directly associated with transcriptional regulation of defense gene expression. Here, we review recent progress in signal transductions downstream of different groups of plant immune receptors, highlighting the converging and diverging molecular events.

Comparing and Linking Post-fire Hillslope Erosion and Channel Change for Different Storm Types

NASA Astrophysics Data System (ADS)

MacDonald, Lee; Kampf, Stephanie; Brogan, Dan; Schmeer, Sarah; Nelson, Peter

2016-04-01

Moderate and high severity wildfires can greatly reduce infiltration rates, leading to orders of magnitude increases in hillslope-scale runoff and erosion rates. These increases can cause dramatic downstream channel change, with post-fire deposition being most common, but this depends on the number, magnitude and timing of storm events. The objective of this study is to compare post-fire hillslope erosion rates and downstream channel change from two distinct rainfall events approximately one year after burning. The first was a set of relatively typical, higher-intensity convective storms in June-August 2013, and the second was a highly unusual, week-long ~270 mm rainstorm in September 2013. The study was conducted in two ~15 km2 watersheds that had two-thirds of their area burned at high or moderate severity by 2012 High Park Fire in northcentral Colorado, USA. Hillslope erosion was measured with sediment fences at 29 sites grouped into five clusters, with each cluster having an associated tipping bucket rain gage. Downstream channel change was monitored at approximately ten cross-sections in each of the two watersheds, Skin Gulch and Hill Gulch. Twelve summer storms produced an overall mean hillslope erosion of 6 Mg ha-1, with higher rainfall intensities at lower elevations and in Skin Gulch causing higher sediment yields. The higher sediment yields in Skin Gulch caused substantial downstream deposition of up to 0.8 m at most cross-sections. Generally lower rainfall in Hill Gulch resulted in less Horton overland flow and hence lower erosion rates and much less downstream deposition. The September storm had roughly twice as much rainfall as the summer thunderstorms, but there were much lower peak rainfall intensities and hillslope-scale sediment yields except where shallow bedrock induced saturation overland flow. The much longer duration of the September storm resulted in sustained high flows, and these flows plus the lower hillslope erosion caused most of the cross-sections to incise rather than aggrade. Maximum mean bed incision was nearly one meter and some cross-sections also exhibited considerable lateral migration, removing much of the aggraded sediment from the previous two summer storm seasons. The results indicate that: 1) sediment yields are best correlated with the amount of precipitation above a given intensity threshold; 2) this threshold tends to increase over time with increasing surface cover; and 3) the standard trajectory of post-fire channel change can be completely altered by extreme storm events.

Numerical Model of Channel and Aquatic Habitat Response to Sediment Pulses in Mountain Rivers of Central Idaho

NASA Astrophysics Data System (ADS)

Lewicki, M.; Buffington, J. M.; Thurow, R. F.; Isaak, D. J.

2006-12-01

Mountain rivers in central Idaho receive pulsed sediment inputs from a variety of mass wasting processes (side-slope landslides, rockfalls, and tributary debris flows). Tributary debris flows and hyperconcentrated flows are particularly common due to winter "rain-on-snow" events and summer thunderstorms, the effects of which are amplified by frequent wildfire and resultant changes in vegetation, soil characteristics, and basin hydrology. Tributary confluences in the study area are commonly characterized by debris fans built by these repeated sediment pulses, providing long-term controls on channel slope, hydraulics and sediment transport capacity in the mainstem channel network. These long-term impacts are magnified during debris-flow events, which deliver additional sediment and wood debris to the fan and may block the mainstem river. These changes in physical conditions also influence local and downstream habitat for aquatic species, and can impact local human infrastructure (roads, bridges). Here, we conduct numerical simulations using a modified version of Cui's [2005] network routing model to examine bedload transport and debris-fan evolution in medium- sized watersheds (65-570 km2) of south-central Idaho. We test and calibrate the model using data from a series of postfire debris-flow events that occurred from 2003-4. We investigate model sensitivity to different controlling factors (location of the pulse within the stream network, volume of the pulse, and size distribution of the input material). We predict that on decadal time scales, sediment pulses cause a local coarsening of the channel bed in the vicinity of the sediment input, and a wave of downstream fining over several kilometers of the river (as long as the pulse material is not coarser than the stream bed itself). The grain-size distribution of the pulse influences its rate of erosion, the rate and magnitude of downstream fining, and the time required for system recovery. The effects of textural fining on spawning habitat depend on the size of sediment in the wave relative to that of the downstream channel; fining can improve spawning habitat availability in channels that are otherwise too coarse, or degrade habitat availability in finer-grained channels. Despite the perceived negative effects of sediment pulses, they can be important sources of gravel and wood debris, creating downstream spawning sites and productive wood-forced habitats. Field observations illustrate that opportunistic salmonids will spawn along the margins of recently deposited debris fans, emphasizing the biological value of such disturbances and the plasticity of salmonids to natural disturbances.

Modeling Neutral Densities Downstream of a Gridded Ion Thruster

NASA Technical Reports Server (NTRS)

Soulas, George C.

2010-01-01

The details of a model for determining the neutral density downstream of a gridded ion thruster are presented. An investigation of the possible sources of neutrals emanating from and surrounding a NEXT ion thruster determined that the most significant contributors to the downstream neutral density include discharge chamber neutrals escaping through the perforated grids, neutrals escaping from the neutralizer, and vacuum facility background neutrals. For the neutral flux through the grids, near- and far-field equations are presented for rigorously determining the neutral density downstream of a cylindrical aperture. These equations are integrated into a spherically-domed convex grid geometry with a hexagonal array of apertures for determining neutral densities downstream of the ion thruster grids. The neutrals escaping from an off-center neutralizer are also modeled assuming diffuse neutral emission from the neutralizer keeper orifice. Finally, the effect of the surrounding vacuum facility neutrals is included and assumed to be constant. The model is used to predict the neutral density downstream of a NEXT ion thruster with and without neutralizer flow and a vacuum facility background pressure. The impacts of past simplifying assumptions for predicting downstream neutral densities are also examined for a NEXT ion thruster.

Wavelet-Domain Nonlinear Energy and Enstrophy Transfers between Atmospheric Blocks and Local Eddies, Averaged over the NCEP Reanalysis

NASA Astrophysics Data System (ADS)

Fournier, A.

2001-05-01

There is reason to believe that weather is more predictable during atmospheric blocking (AB) events than during ``normal'' (N) meteorological states (Bengtsson 1981). Saltzman (1959) proposed that such quasi-permanent disturbances in general may be maintained by an up-scale nonlinear eddy kinetic energy (KE) cascade. This idea was later applied to or verified for AB observations or models by Green (1970,1977), Hansen & Chen (1982), Shutts (1983,1986), Haines & Marshall (1987), Butchart et al. (1989), Riyu & Ronghui (1996), Nakamura et al. (1997) and others. We present a study of the nonlinear-energetics contrast between Atlantic (A) and Pacific (P) AB and N, generalizing the Fourier-based approach originated by Saltzman (1957) and Hansen & Sutera (1984). The Wavelet Energetics (WE) recently introduced by the author is applied to the 53-y NCEP Reanalyis, extending his study of AB presented in AGU, 1995 and (Fournier 1998,1999,2000). Temporal mean and variance maps suggest that AB is associated with eddy activity concentrated on smaller scales on either side of the AB ridge. Correlating WE, AB relative to nonblocking, illumenates the AB similarities and differences between P and A, as the former's WE pattern is shifted over the latter's. The theoretical conservation of Wavelet Flux is numerically verified to well below observational tolerance. Statistical significance is estimated. Conclusions include the following. Wavelet KE and enstrophy stocks (localized at scale ≈21-jπ r⊕ cosǎrphi, zonal-wavenumber band ≈ ]2j-1,2j] and longitude ≈21-jkπ ) Kjk and Ejk increase upstream, decrease downstream of either block. Mean-flow transfer MKjk increases downstream, at j=2 (and j=4 for A, 5 for P). Eddy transfer TKjk has more complex changes, A!=qP except that TK1k decreases downstream. Eddy flux FKjk shows downscale (upscale) cascade downstream (upstream) of P (A blocks tend to migrate in λ more than do P, that would weaken this signal for A). MEjk and TEjk have less significant changes. Finally, FEjk shows some sign of downscale (upscale) cascade downstream (upstream) of both blocks.

Scale Invariance in Lateral Head Scans During Spatial Exploration.

PubMed

Yadav, Chetan K; Doreswamy, Yoganarasimha

2017-04-14

Universality connects various natural phenomena through physical principles governing their dynamics, and has provided broadly accepted answers to many complex questions, including information processing in neuronal systems. However, its significance in behavioral systems is still elusive. Lateral head scanning (LHS) behavior in rodents might contribute to spatial navigation by actively managing (optimizing) the available sensory information. Our findings of scale invariant distributions in LHS lifetimes, interevent intervals and event magnitudes, provide evidence for the first time that the optimization takes place at a critical point in LHS dynamics. We propose that the LHS behavior is responsible for preprocessing of the spatial information content, critical for subsequent foolproof encoding by the respective downstream neural networks.

Scale Invariance in Lateral Head Scans During Spatial Exploration

NASA Astrophysics Data System (ADS)

Yadav, Chetan K.; Doreswamy, Yoganarasimha

2017-04-01

Universality connects various natural phenomena through physical principles governing their dynamics, and has provided broadly accepted answers to many complex questions, including information processing in neuronal systems. However, its significance in behavioral systems is still elusive. Lateral head scanning (LHS) behavior in rodents might contribute to spatial navigation by actively managing (optimizing) the available sensory information. Our findings of scale invariant distributions in LHS lifetimes, interevent intervals and event magnitudes, provide evidence for the first time that the optimization takes place at a critical point in LHS dynamics. We propose that the LHS behavior is responsible for preprocessing of the spatial information content, critical for subsequent foolproof encoding by the respective downstream neural networks.

Cellular reprogramming through mitogen-activated protein kinases.

PubMed

Lee, Justin; Eschen-Lippold, Lennart; Lassowskat, Ines; Böttcher, Christoph; Scheel, Dierk

2015-01-01

Mitogen-activated protein kinase (MAPK) cascades are conserved eukaryote signaling modules where MAPKs, as the final kinases in the cascade, phosphorylate protein substrates to regulate cellular processes. While some progress in the identification of MAPK substrates has been made in plants, the knowledge on the spectrum of substrates and their mechanistic action is still fragmentary. In this focused review, we discuss the biological implications of the data in our original paper (Sustained mitogen-activated protein kinase activation reprograms defense metabolism and phosphoprotein profile in Arabidopsis thaliana; Frontiers in Plant Science 5: 554) in the context of related research. In our work, we mimicked in vivo activation of two stress-activated MAPKs, MPK3 and MPK6, through transgenic manipulation of Arabidopsis thaliana and used phosphoproteomics analysis to identify potential novel MAPK substrates. Here, we plotted the identified putative MAPK substrates (and downstream phosphoproteins) as a global protein clustering network. Based on a highly stringent selection confidence level, the core networks highlighted a MAPK-induced cellular reprogramming at multiple levels of gene and protein expression-including transcriptional, post-transcriptional, translational, post-translational (such as protein modification, folding, and degradation) steps, and also protein re-compartmentalization. Additionally, the increase in putative substrates/phosphoproteins of energy metabolism and various secondary metabolite biosynthesis pathways coincides with the observed accumulation of defense antimicrobial substances as detected by metabolome analysis. Furthermore, detection of protein networks in phospholipid or redox elements suggests activation of downstream signaling events. Taken in context with other studies, MAPKs are key regulators that reprogram cellular events to orchestrate defense signaling in eukaryotes.

Mercury and methylmercury concentrations and loads in the Cache Creek watershed, California

USGS Publications Warehouse

Domagalski, Joseph L.; Alpers, Charles N.; Slotton, D.G.; Suchanek, T.H.; Ayers, S.M.

2004-01-01

Concentrations and loads of total mercury and methylmercury were measured in streams draining abandoned mercury mines and in the proximity of geothermal discharge in the Cache Creek watershed of California during a 17-month period from January 2000 through May 2001. Rainfall and runoff were lower than long-term averages during the study period. The greatest loading of mercury and methylmercury from upstream sources to downstream receiving waters, such as San Francisco Bay, generally occurred during or after winter rainfall events. During the study period, loads of mercury and methylmercury from geothermal sources tended to be greater than those from abandoned mining areas, a pattern attributable to the lack of large precipitation events capable of mobilizing significant amounts of either mercury-laden sediment or dissolved mercury and methylmercury from mine waste. Streambed sediments of Cache Creek are a significant source of mercury and methylmercury to downstream receiving bodies of water. Much of the mercury in these sediments is the result of deposition over the last 100-150 years by either storm-water runoff, from abandoned mines, or continuous discharges from geothermal areas. Several geochemical constituents were useful as natural tracers for mining and geothermal areas, including the aqueous concentrations of boron, chloride, lithium and sulfate, and the stable isotopes of hydrogen and oxygen in water. Stable isotopes of water in areas draining geothermal discharges showed a distinct trend toward enrichment of 18O compared with meteoric waters, whereas much of the runoff from abandoned mines indicated a stable isotopic pattern more consistent with local meteoric water. ?? 2004 Elsevier B.V. All rights reserved.

Microreactor and method for preparing a radiolabeled complex or a biomolecule conjugate

DOEpatents

Reichert, David E; Kenis, Paul J. A.; Wheeler, Tobias D; Desai, Amit V; Zeng, Dexing; Onal, Birce C

2015-03-17

A microreactor for preparing a radiolabeled complex or a biomolecule conjugate comprises a microchannel for fluid flow, where the microchannel comprises a mixing portion comprising one or more passive mixing elements, and a reservoir for incubating a mixed fluid. The reservoir is in fluid communication with the microchannel and is disposed downstream of the mixing portion. A method of preparing a radiolabeled complex includes flowing a radiometal solution comprising a metallic radionuclide through a downstream mixing portion of a microchannel, where the downstream mixing portion includes one or more passive mixing elements, and flowing a ligand solution comprising a bifunctional chelator through the downstream mixing portion. The ligand solution and the radiometal solution are passively mixed while in the downstream mixing portion to initiate a chelation reaction between the metallic radionuclide and the bifunctional chelator. The chelation reaction is completed to form a radiolabeled complex.

Internal baffling for fuel injector

DOEpatents

Johnson, Thomas Edward; Lacy, Benjamin; Stevenson, Christian

2014-08-05

A fuel injector includes a fuel delivery tube; a plurality of pre-mixing tubes, each pre-mixing tube comprising at least one fuel injection hole; an upstream tube support plate that supports upstream ends of the plurality of pre-mixing tubes; a downstream tube support plate that supports downstream ends of the plurality of pre-mixing tubes; an outer wall connecting the upstream tube support plate and the downstream tube support plate and defining a plenum therewith; and a baffle provided in the plenum. The baffle includes a radial portion. A fuel delivered in the upstream direction by the fuel delivery tube is directed radially outwardly in the plenum between the radial portion of the baffle and the downstream tube support plate, then in the downstream direction around an outer edge portion of the radial portion, and then radially inwardly between the radial portion and the upstream tube support plate.

Disaggregating soil erosion processes within an evolving experimental landscape

USDA-ARS?s Scientific Manuscript database

Soil-mantled landscapes subjected to rainfall, runoff events, and downstream base level adjustments will erode and evolve in time and space. Yet the precise mechanisms for soil erosion also will vary, and such variations may not be adequately captured by soil erosion prediction technology. This st...

Modeling effectiveness of management practices for flood mitigation using GIS spatial analysis functions in Upper Cilliwung watershed

NASA Astrophysics Data System (ADS)

Darma Tarigan, Suria

2016-01-01

Flooding is caused by excessive rainfall flowing downstream as cumulative surface runoff. Flooding event is a result of complex interaction of natural system components such as rainfall events, land use, soil, topography and channel characteristics. Modeling flooding event as a result of interaction of those components is a central theme in watershed management. The model is usually used to test performance of various management practices in flood mitigation. There are various types of management practices for flood mitigation including vegetative and structural management practices. Existing hydrological model such as SWAT and HEC-HMS models have limitation to accommodate discrete management practices such as infiltration well, small farm reservoir, silt pits in its analysis due to the lumped structure of these models. Aim of this research is to use raster spatial analysis functions of Geo-Information System (RGIS-HM) to model flooding event in Ciliwung watershed and to simulate impact of discrete management practices on surface runoff reduction. The model was validated using flooding data event of Ciliwung watershed on 29 January 2004. The hourly hydrograph data and rainfall data were available during period of model validation. The model validation provided good result with Nash-Suthcliff efficiency of 0.8. We also compared the RGIS-HM with Netlogo Hydrological Model (NL-HM). The RGIS-HM has similar capability with NL-HM in simulating discrete management practices in watershed scale.

Lipids in the Stomach - Implications for the Evaluation of Food Effects on Oral Drug Absorption.

PubMed

Koziolek, Mirko; Carrière, Frédéric; Porter, Christopher J H

2018-02-08

Food effects on oral drug bioavailability can have significant impact on the provision of safe and reliable oral pharmacotherapy. A mechanistic understanding of the events that contribute to the occurrence of food effects is therefore critical. An increased oral bioavailability is often seen for poorly water-soluble drugs after co-administration with lipids, including lipids in food, and is commonly explained by the ability of lipids to enhance drug solubility in intestinal luminal fluids. In contrast, the impact of lipids on drug solubilisation in the stomach has received less attention. This is in spite of the fact that lipid digestion is initiated in the stomach by human gastric lipase and that gastric events also initiate emulsification of lipids in the gastrointestinal tract. The stomach therefore acts to 'pre-process' lipids for subsequent events in the intestine and may significantly affect downstream events at intestinal drug absorption sites. In this article, the mechanisms by which lipids are processed in the stomach are reviewed and the potential impact of these processes on drug absorption discussed. Attention is also focused on in vitro methods that are used to assess gastric processing of lipids and their application to better understand food effects on drug release and absorption.

Episodic Sediment Supply from Mountains and Downstream Emplacement within Large Lowland Basins: Seeking a Sink-to-Source Synthesis

NASA Astrophysics Data System (ADS)

Aalto, R. E.

2009-12-01

Application of a new geochronological method for high-resolution 210-Pb dating over the past 5 years has facilitated the identification of individual floodplain sedimentation events across disparate large river basins: three examples from ongoing research include a pristine 720,000 km2 basin in northern Bolivia, a 36,000 km2 basin in Papua New Guinea, and the 70,000 km2 Sacramento River Basin in California. Published and new research suggests that large, rapid-rise, cold-phase ENSO floods account for the preponderance of sediment accumulation within the two tropical systems, and that extreme floods associated with ENSO similarly correspond to transport and deposition of material within the extensive floodways along the Sacramento River. The vast scale of these temporally discrete deposits within such large river systems (typically 10s to 100s of millions of tonnes) begs the question: where did all this material come from? Huge deposits require similarly massive episodic supply and transport of material from upstream, often specifically within the very short timescale of a single large flood event. What data and techniques are available to track and balance such enormous mass budgets? This presentation explores this general theme with new data from the three iconic systems identified above. New daily discharge data are coupled with 210-Pb concentrations and particle size distribution in sediment to elucidate the considerable inter-annual variation of sediment supply from the Andes, resulting from the interaction of Andean erosion, anthropogenic effects, and the dynamics of extreme climate. Biogeochemical and/or geochemical tracers can be employed for all three study basins to track sediment from source to sink (or alternatively, working from the well-defined sink to the less-constrained source), providing insight into the geomorphic processes that modulate the efflux, transport, intermediate channel/floodplain storage, and downstream delivery of sediment during extreme flooding events. Landslide in the Bolivian Andes: Does episodic erosion correlate with episodic deposition?

Lateral and vertical distribution of downstream migrating juvenile sea lamprey

USGS Publications Warehouse

Sotola, V. Alex; Miehls, Scott M.; Simard, Lee G.; Marsden, J. Ellen

2018-01-01

Sea lamprey is considered an invasive and nuisance species in the Laurentian Great Lakes, Lake Champlain, and the Finger Lakes of New York and is a major focus of control efforts. Currently, management practices focus on limiting the area of infestation using barriers to block migratory adults, and lampricides to kill ammocoetes in infested tributaries. No control efforts currently target the downstream-migrating post-metamorphic life stage which could provide another management opportunity. In order to apply control methods to this life stage, a better understanding of their downstream movement patterns is needed. To quantify spatial distribution of downstream migrants, we deployed fyke and drift nets laterally and vertically across the stream channel in two tributaries of Lake Champlain. Sea lamprey was not randomly distributed across the stream width and lateral distribution showed a significant association with discharge. Results indicated that juvenile sea lamprey is most likely to be present in the thalweg and at midwater depths of the stream channel. Further, a majority of the catch occurred during high flow events, suggesting an increase in downstream movement activity when water levels are higher than base flow. Discharge and flow are strong predictors of the distribution of out-migrating sea lamprey, thus managers will need to either target capture efforts in high discharge areas of streams or develop means to guide sea lamprey away from these areas.

Suprathermal electron loss cone distributions in the solar wind: Ulysses observations

NASA Technical Reports Server (NTRS)

Phillips, J. L.; Feldman, W. C.; Gosling, J. T.; Hammond, C. M.; Forsyth, R. J.

1995-01-01

Solar wind suprathermal electron distributions in the solar wind generally carry a field-aligned antisunward heat flux. Within coronal mass ejections and upstream of strong shocks driven by corotating interaction regions (CIRs), counterstreaming electron beams are observed. We present observations by the Ulysses solar wind plasma experiment of a new class of suprathermal electron signatures. At low solar latitudes and heliocentric distances beyond 3.5 AU Ulysses encountered several intervals, ranging in duration from 1 hour to 22 hours, in which the suprathermal distributions included an antisunward field-aligned beam and a return population with a flux dropout typically spanning +/- 60 deg from the sunward field-aligned direction. All events occurred within CIRs, downstream of the forward and reverse shocks or waves bounding the interaction regions. We evaluate the hypothesis that the sunward-moving electrons result from reflection of the antisunward beams at magnetic field compressions downstream from the observations, with wide loss cones caused by the relatively weak compression ratio. This hypothesis requires that field magnitude within the CIRs actually increase with increasing field-aligned distance from the Sun. Details of the electron distributions and ramifications for CIR and shock geometry will be presented.

Numerical modelling study of gully recharge and debris flows in Haida Gwaii, British Columbia

NASA Astrophysics Data System (ADS)

Martin, Yvonne; Johnson, Edward; Chaikina, Olga

2015-04-01

In high mountains, debris flows are a major process responsible for transferring sediment to more downstream fluvial reaches. This sediment transfer begins on mountain hillslopes where various mass wasting processes move sediment from hillslopes to uppermost reaches of the channel system (these reaches are herein referred to as gullies and only experience water flow during high intensity precipitation events). Sediment recharge into gullies, which has received minimal attention in the scientific literature, refers to the transfer of sediment and other debris from surrounding hillslopes into gullies (Jakob and Oden, 2005). Debris flow occurrence and debris flow volumes depend on some precipitation threshold as well as volumes of material contained in the particular gully. For example, if one debris flow has removed all of the accumulated material from the gully, then any subsequent debris flow will be smaller if enough time has not yet passed for notable sediment recharge. Herein, we utilize the numerical model of landscape development, LandMod (Martin, 1998; Dadson and Church, 2005; Martin, 2007), to explore connections between hillslope processes, gully recharge rates, and transfer of sediment to downstream channel reaches in the Haida Gwaii, British Columbia. Hillslope processes in the model include shallow landsliding, bedrock failures and weathering. The updated debris flow algorithm is based on extensive field data available for debris flows in Haida Gwaii (e.g., Rood, 1984; Oden, 1994; Jakob and Oden, 2005), as well as theoretical considerations based on debris flow studies. The most significant model extension is the calculation of gully recharge rates; for each gully, the total accumulated sediment in gullies at each time step is determined using a power-law relation for area-normalized recharge rate versus elapsed time since the last debris flow. Thus, when the stochastic driver for debris flow occurrence triggers an event, the amount of stored material is known and can be transferred and deposited along the channel system. Results show that the size distribution of debris flows and sediment transfers from gullies to downstream reaches are modified by the inclusion of a module that accounts for sediment recharge when compared to model runs that do not consider gully recharge.

Deconstructing the Effects of Flow on DOC, Nitrate, and Major Ion Interactions Using a High-Frequency Aquatic Sensor Network

NASA Astrophysics Data System (ADS)

Koenig, L. E.; Shattuck, M. D.; Snyder, L. E.; Potter, J. D.; McDowell, W. H.

2017-12-01

Streams provide a physical linkage between land and downstream river networks, delivering solutes derived from multiple catchment sources. We analyzed high-frequency time series of stream solutes to characterize the timing and magnitude of major ion, nutrient, and organic matter transport over event, seasonal, and annual timescales as well as to assess whether nitrate (NO3-) and dissolved organic carbon (DOC) transport are coupled in catchments, which would be expected if they are subject to similar biogeochemical controls throughout the watershed. Our data set includes in situ observations of NO3-, fluorescent dissolved organic matter (DOC proxy), and specific conductance spanning 2-4 years in 10 streams and rivers across New Hampshire, including observations of nearly 700 individual hydrologic events. We found a positive response of NO3- and DOC to flow in forested streams, but watershed development led to a negative relationship between NO3- and discharge, and thus a decoupling of the overall NO3- and DOC responses to flow. On event and seasonal timescales, NO3- and DOC consistently displayed different behaviors. For example, in several streams, FDOM yield was greatest during summer storms while NO3- yield was greatest during winter storms. Most streams had generalizable storm NO3- and DOC responses, but differences in the timing of NO3- and DOC transport suggest different catchment sources. Further, certain events, including rain-on-snow and summer storms following dry antecedent conditions, yielded disproportionate NO3- responses. High-frequency data allow for increased understanding of the processes controlling solute variability and will help reveal their responses to changing climatic regimes.

Articulated transition duct in turbomachine

DOEpatents

Flanagan, James Scott; McMahan, Kevin Weston; LeBegue, Jeffrey Scott; Pentecost, Ronnie Ray

2014-04-29

Turbine systems are provided. A turbine system includes a transition duct comprising an inlet, an outlet, and a duct passage extending between the inlet and the outlet and defining a longitudinal axis, a radial axis, and a tangential axis. The outlet of the transition duct is offset from the inlet along the longitudinal axis and the tangential axis. The duct passage includes an upstream portion and a downstream portion. The upstream portion extends from the inlet between an inlet end and an aft end. The downstream portion extends from the outlet between an outlet end and a head end. The turbine system further includes a joint coupling the aft end of the upstream portion and the head end of the downstream portion together. The joint is configured to allow movement of the upstream portion and the downstream portion relative to each other about or along at least one axis.

The uncoupling of catalysis and translocation in the viral RNA-dependent RNA polymerase

PubMed Central

Shu, Bo; Gong, Peng

2017-01-01

ABSTRACT The nucleotide addition cycle of nucleic acid polymerases includes 2 major events: the pre-chemistry active site closure leading to the addition of one nucleotide to the product chain; the post-chemistry translocation step moving the polymerase active site one position downstream on its template. In viral RNA-dependent RNA polymerases (RdRPs), structural and biochemical evidences suggest that these 2 events are not tightly coupled, unlike the situation observed in A-family polymerases such as the bacteriophage T7 RNA polymerase. Recently, an RdRP translocation intermediate crystal structure of enterovirus 71 shed light on how translocation may be controlled by elements within RdRP catalytic motifs, and a series of poliovirus apo RdRP crystal structures explicitly suggest that a motif B loop may assist the movement of the template strand in late stages of transcription. Implications of RdRP catalysis-translocation uncoupling and the remaining challenges to further elucidate RdRP translocation mechanism are also discussed. PMID:28277928

Effects of backpacker use, pack stock trail use, and pack stock grazing on water-quality indicators, including nutrients, E. coli, hormones, and pharmaceuticals, in Yosemite National Park, USA

USGS Publications Warehouse

Forrester, Harrison; Clow, David W.; Roche, James W.; Heyvaert, Alan C.; Battaglin, William A.

2017-01-01

We investigated how visitor-use affects water quality in wilderness in Yosemite National Park. During the summers of 2012–2014, we collected and analyzed surface-water samples for water-quality indicators, including fecal indicator bacteria Escherichia coli, nutrients (nitrogen, phosphorus, carbon), suspended sediment concentration, pharmaceuticals, and hormones. Samples were collected upstream and downstream from different types of visitor use at weekly to biweekly intervals and during summer storms. We conducted a park-wide synoptic sampling campaign during summer 2014, and sampled upstream and downstream from meadows to evaluate the mitigating effect of meadows on water quality. At pack stock stream crossings, Escherichia coli concentrations were greater downstream from crossings than upstream (median downstream increase in Escherichia coli of three colony forming units 100 mL−1), with the greatest increases occurring during storms (median downstream increase in Escherichia coli of 32 CFU 100 mL−1). At backpacker use sites, hormones, and pharmaceuticals (e.g., insect repellent) were detected at downstream sites, and Escherichia coli concentrations were greater at downstream sites (median downstream increase in Escherichia coli of 1 CFU 100 mL−1). Differences in water quality downstream vs. upstream from meadows grazed by pack stock were not detectable for most water-quality indicators, however, Escherichia coli concentrations decreased downstream, suggesting entrapment and die-off of fecal indicator bacteria in meadows. Our results indicate that under current-use levels pack stock trail use and backpacker use are associated with detectable, but relatively minor, effects on water quality, which are most pronounced during storms.

Effects of Backpacker Use, Pack Stock Trail Use, and Pack Stock Grazing on Water-Quality Indicators, Including Nutrients, E. coli, Hormones, and Pharmaceuticals, in Yosemite National Park, USA

NASA Astrophysics Data System (ADS)

Forrester, Harrison; Clow, David; Roche, James; Heyvaert, Alan; Battaglin, William

2017-09-01

We investigated how visitor-use affects water quality in wilderness in Yosemite National Park. During the summers of 2012-2014, we collected and analyzed surface-water samples for water-quality indicators, including fecal indicator bacteria Escherichia coli, nutrients (nitrogen, phosphorus, carbon), suspended sediment concentration, pharmaceuticals, and hormones. Samples were collected upstream and downstream from different types of visitor use at weekly to biweekly intervals and during summer storms. We conducted a park-wide synoptic sampling campaign during summer 2014, and sampled upstream and downstream from meadows to evaluate the mitigating effect of meadows on water quality. At pack stock stream crossings, Escherichia coli concentrations were greater downstream from crossings than upstream (median downstream increase in Escherichia coli of three colony forming units 100 mL-1), with the greatest increases occurring during storms (median downstream increase in Escherichia coli of 32 CFU 100 mL-1). At backpacker use sites, hormones, and pharmaceuticals (e.g., insect repellent) were detected at downstream sites, and Escherichia coli concentrations were greater at downstream sites (median downstream increase in Escherichia coli of 1 CFU 100 mL-1). Differences in water quality downstream vs. upstream from meadows grazed by pack stock were not detectable for most water-quality indicators, however, Escherichia coli concentrations decreased downstream, suggesting entrapment and die-off of fecal indicator bacteria in meadows. Our results indicate that under current-use levels pack stock trail use and backpacker use are associated with detectable, but relatively minor, effects on water quality, which are most pronounced during storms.

Transport of Cryptosporidium, Giardia, Source-specific Indicator Organisms, and Standard Water Quality Constituents During Storm Events

NASA Astrophysics Data System (ADS)

Sturdevant-Rees, P. L.; Bourdeau, D.; Baker, R.; Long, S. C.; Barten, P. K.

2004-05-01

Microbial and water-quality measurements are collected during storm events under a variety of meteorological and land-use conditions in order to 1) identify risk of Cryptosporidium oocysts, Giardia cysts and other constituents, including microbial indicator organisms, entering surface waters from various land uses during periods of surface runoff; 2) optimize storm sampling procedures for these parameters; and 3) optimize strategies for accurate determination of constituent loads. The investigation is focused on four isolated land uses: forested with free ranging wildlife, beaver influenced forested with free ranging wildlife, residential/commercial, and dairy farm grazing/pastureland using an upstream and downstream sampling strategy. Traditional water-quality analyses include pH, temperature, turbidity, conductivity, total suspended solids, total phosphorus, total Kjeldahl-nitrogen, and ammonia nitrogen, Giardia cysts and Cryptosporidium oocysts. Total coliforms and fecal coliforms are measured as industry standard microbial analyses. Sorbitol-fermenting Bifidobacteria, Rhodococcus coprophilus, Clostridium perfringens spores, and Somatic and F-specific coliphages are measured at select sites as potential alternative source-specific indicator organisms. Upon completion of the project, the final database will consist of wet weather transport data for a set of parameters during twenty-four distinct storm-events in addition to monthly baseline data. A subset of the results to date will be presented, with focus placed on demonstrating the impact of beaver on constituent loadings over a variety of hydrologic and meteorological conditions.

Transition duct with divided upstream and downstream portions

DOE Office of Scientific and Technical Information (OSTI.GOV)

McMahan, Kevin Weston; LeBegue, Jeffrey Scott; Maldonado, Jaime Javier

2015-07-14

Turbine systems are provided. In one embodiment, a turbine system includes a transition duct comprising an inlet, an outlet, and a duct passage extending between the inlet and the outlet and defining a longitudinal axis, a radial axis, and a tangential axis. The outlet of the transition duct is offset from the inlet along the longitudinal axis and the tangential axis. The duct passage includes an upstream portion extending from the inlet and a downstream portion extending from the outlet. The turbine system further includes a rib extending from an outer surface of the duct passage, the rib dividing themore » upstream portion and the downstream portion.« less

Annual glacier dammed lake drainage in Zackenberg, Northeast Greenland

NASA Astrophysics Data System (ADS)

Lane, Timothy; Adamson, Kathryn; Matthews, Tom

2016-04-01

A.P. Olsen is a 295 km2 ice cap in the Zackenberg region of Northeast Greenland (74.6° N, 21.5° W), 35 km from the ZERO Zackenberg Research Station. The ice cap lies on a gneissic plateau, covering an elevation of 200 to 1450 m a.s.l. A.P. Olsen mass balance has been monitored since 2008 and reconstructed for the period 1995-2007. Meltwater from this ice cap drains into the Zackenberg River, and into Young Sund via the Zackenberg Delta. One outlet dams a c. 0.8 km2 lake fed by the northern part of the ice cap. Observational data suggests this lake drains annually, flooding subglacially into the Zackenberg River. But the impacts of these flood events on the hydrology, sediment transfer, and geomorphology of the proglacial zone downstream have not been examined in detail. Understanding the impacts of glacial lake outburst flood events is important in the sensitive Arctic environment, where glacial change is rapid. We use Landsat scenes to reconstruct lake extent from 1999-2015. This is compared to Zackenberg River discharge measurements, available from the ZERO Zackenberg monitoring programme. These datasets are used to examine the nature and timing of flood events, and assess the impacts on the Zackenberg river downstream.

VIEW OF FOSSIL CREEK DIVERSION DAM FROM DOWNSTREAM (INCLUDES 1950s ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

VIEW OF FOSSIL CREEK DIVERSION DAM FROM DOWNSTREAM (INCLUDES 1950s AUTOMATIC/REMOTE CONTROL SLUICE GATE IN UPPER CENTER OF DAM, NORTH SIDE). LOOKING NORTH-NORTHWEST - Childs-Irving Hydroelectric Project, Fossil Creek Diversion Dam, Forest Service Road 708/502, Camp Verde, Yavapai County, AZ

Airfoil

DOEpatents

Ristau, Neil; Siden, Gunnar Leif

2015-07-21

An airfoil includes a leading edge, a trailing edge downstream from the leading edge, a pressure surface between the leading and trailing edges, and a suction surface between the leading and trailing edges and opposite the pressure surface. A first convex section on the suction surface decreases in curvature downstream from the leading edge, and a throat on the suction surface is downstream from the first convex section. A second convex section is on the suction surface downstream from the throat, and a first convex segment of the second convex section increases in curvature.

Total and methyl mercury concentrations in sediment and water of a constructed wetland in the Athabasca Oil Sands Region.

PubMed

Oswald, Claire J; Carey, Sean K

2016-06-01

In the Athabasca Oil Sands Region in northeastern Alberta, Canada, oil sands operators are testing the feasibility of peatland construction on the post-mining landscape. In 2009, Syncrude Canada Ltd. began construction of the 52 ha Sandhill Fen pilot watershed, including a 15 ha, hydrologically managed fen peatland built on sand-capped soft oil sands tailings. An integral component of fen reclamation is post-construction monitoring of water quality, including salinity, fluvial carbon, and priority pollutant elements. In this study, the effects of fen reclamation and elevated sulfate levels on mercury (Hg) fate and transport in the constructed system were assessed. Total mercury (THg) and methylmercury (MeHg) concentrations in the fen sediment were lower than in two nearby natural fens, which may be due to the higher mineral content of the Sandhill Fen peat mix and/or a loss of Hg through evasion during the peat harvesting, stockpiling and placement processes. Porewater MeHg concentrations in the Sandhill Fen typically did not exceed 1.0 ng L(-1). The low MeHg concentrations may be a result of elevated porewater sulfate concentrations (mean 346 mg L(-1)) and an increase in sulphide concentrations with depth in the peat, which are known to suppress MeHg production. Total Hg and MeHg concentrations increased during a controlled mid-summer flooding event where the water table rose above the ground surface in most of the fen. The Hg dynamics during this event showed that hydrologic fluctuations in this system exacerbate the release of THg and MeHg downstream. In addition, the elevated SO4(2-) concentrations in the peat porewaters may become a problem with respect to downstream MeHg production once the fen is hydrologically connected to a larger wetland network that is currently being constructed. Copyright © 2016 Elsevier Ltd. All rights reserved.

Changes in contaminant loading and hydro-chemical storm behavior after the Station Fire

NASA Astrophysics Data System (ADS)

Burke, M. P.; Hogue, T. S.; Barco, J.; Wessel, C. J.

2010-12-01

The 2009 Station Fire, currently noted as the largest fire in Los Angeles County history, consumed over 650 square kilometers of National Forest land in the San Gabriel Mountain Range. These mountains, located on the east side (leeward) of the Los Angeles basin, are known to have some of the highest deposition rates of atmospheric pollutants in the nation. Even pre-fire, urban-fringe basins in this mountain range serve as an upstream source of contaminants to downstream urban streams. Burned watersheds undergo significant physical and chemical changes that dramatically alter hydrologic flowpaths, erosion potential, surface soil chemistry, and pollutant delivery. Much of the degradation in water quality is attributed to the extensive soil erosion during post-fire runoff events which carry large sediment loads, mobilizing and transporting contaminants to and within downstream waters. High resolution storm samples collected from a small front range watershed provide a unique opportunity to investigate the impacts of wildfire contaminant loading in a watershed that is significantly impacted by high atmospheric deposition of urban contaminates. Data includes four events from WY 2009 (pre-fire) and WY 2010 (post-fire), along with inter-storm grab samples from each storm season. Samples were analyzed for basic anions, nutrients, trace metals, and total suspended solids. Following the fire, storms with similar precipitation patterns yielded loads up to three orders of magnitude greater than pre-fire for some toxic metals, including lead and cadmium. Dramatic increases were also observed in trace metal concentrations typically associated with particulates, while weathering solute concentrations decreased. Post fire intra-storm dynamics exhibited a shift back toward pre-fire behavior by the end of the first rainy season for most of the measured constituents. Additionally, some unexpected behaviors were observed; specifically mercury loads continued to increase throughout the first post-fire rainy season regardless of storm size.

Foreign Object Damage Identification in Turbine Engines

NASA Technical Reports Server (NTRS)

Strack, William; Zhang, Desheng; Turso, James; Pavlik, William; Lopez, Isaac

2005-01-01

This report summarizes the collective work of a five-person team from different organizations examining the problem of detecting foreign object damage (FOD) events in turbofan engines from gas path thermodynamic and bearing accelerometer sensors, and determining the severity of damage to each component (diagnosis). Several detection and diagnostic approaches were investigated and a software tool (FODID) was developed to assist researchers detect/diagnose FOD events. These approaches include (1) fan efficiency deviation computed from upstream and downstream temperature/ pressure measurements, (2) gas path weighted least squares estimation of component health parameter deficiencies, (3) Kalman filter estimation of component health parameters, and (4) use of structural vibration signal processing to detect both large and small FOD events. The last three of these approaches require a significant amount of computation in conjunction with a physics-based analytic model of the underlying phenomenon the NPSS thermodynamic cycle code for approaches 1 to 3 and the DyRoBeS reduced-order rotor dynamics code for approach 4. A potential application of the FODID software tool, in addition to its detection/diagnosis role, is using its sensitivity results to help identify the best types of sensors and their optimum locations within the gas path, and similarly for bearing accelerometers.

Management Options During the 2011-2012 Drought on the Apalachicola River: A Systems Dynamic Model Evaluation.

PubMed

Leitman, S; Pine, W E; Kiker, G

2016-08-01

The Apalachicola-Chattahoochee-Flint River basin (ACF) is a large watershed in the southeastern United States. In 2012, the basin experienced the second year of a severe drought and the third multi-year drought in the last 15 years. During severe droughts, low reservoir and river levels can cause economic and ecological impacts to the reservoir, river, and estuarine ecosystems. During drought, augmenting Apalachicola River discharge through upstream reservoir releases and demand management are intuitive and often-suggested solutions to minimizing downstream effects. We assessed whether the existing reservoir system could be operated to minimize drought impacts on downstream water users and ecosystems through flow augmentation. Our analysis finds that in extreme drought such as observed during 2012, increases in water releases from reservoir storage are insufficient to even increase Apalachicola River discharge to levels observed in the 2007 drought. This suggests that there is simply not enough water available in managed storage to offset extreme drought events. Because drought frequency and intensity is predicted to increase under a variety of climate forecasts, our results demonstrate the need for a critical assessment of how water managers will meet increasing water demands in the ACF. Key uncertainties that should be addressed include (1) identifying the factors that led to extremely low Flint River discharge in 2012, and (2) determining how water "saved" via demand management is allocated to storage or passed to downstream ecosystem needs as part of the ongoing revisions to the ACF Water Control Manual by the US Army Corps of Engineers.

Management Options During the 2011-2012 Drought on the Apalachicola River: A Systems Dynamic Model Evaluation

NASA Astrophysics Data System (ADS)

Leitman, S.; Pine, W. E.; Kiker, G.

2016-08-01

The Apalachicola-Chattahoochee-Flint River basin (ACF) is a large watershed in the southeastern United States. In 2012, the basin experienced the second year of a severe drought and the third multi-year drought in the last 15 years. During severe droughts, low reservoir and river levels can cause economic and ecological impacts to the reservoir, river, and estuarine ecosystems. During drought, augmenting Apalachicola River discharge through upstream reservoir releases and demand management are intuitive and often-suggested solutions to minimizing downstream effects. We assessed whether the existing reservoir system could be operated to minimize drought impacts on downstream water users and ecosystems through flow augmentation. Our analysis finds that in extreme drought such as observed during 2012, increases in water releases from reservoir storage are insufficient to even increase Apalachicola River discharge to levels observed in the 2007 drought. This suggests that there is simply not enough water available in managed storage to offset extreme drought events. Because drought frequency and intensity is predicted to increase under a variety of climate forecasts, our results demonstrate the need for a critical assessment of how water managers will meet increasing water demands in the ACF. Key uncertainties that should be addressed include (1) identifying the factors that led to extremely low Flint River discharge in 2012, and (2) determining how water "saved" via demand management is allocated to storage or passed to downstream ecosystem needs as part of the ongoing revisions to the ACF Water Control Manual by the US Army Corps of Engineers.

System and method for reducing combustion dynamics in a combustor

DOEpatents

Uhm, Jong Ho; Ziminsky, Willy Steve; Johnson, Thomas Edward; Srinivasan, Shiva; York, William David

2016-11-29

A system for reducing combustion dynamics in a combustor includes an end cap that extends radially across the combustor and includes an upstream surface axially separated from a downstream surface. A combustion chamber is downstream of the end cap, and tubes extend from the upstream surface through the downstream surface. Each tube provides fluid communication through the end cap to the combustion chamber. The system further includes means for reducing combustion dynamics in the combustor. A method for reducing combustion dynamics in a combustor includes flowing a working fluid through tubes that extend axially through an end cap that extends radially across the combustor and obstructing at least a portion of the working fluid flowing through a first set of the tubes.

Transport of sediment through a channel network during a post-fire debris flow

NASA Astrophysics Data System (ADS)

Nyman, P.; Box, W. A. C.; Langhans, C.; Stout, J. C.; Keesstra, S.; Sheridan, G. J.

2017-12-01

Transport processes linking sediment in steep headwaters with rivers during high magnitude events are rarely examined in detail, particularly in forested settings where major erosion events are rare and opportunities for collecting data are limited. Yet high magnitude events in headwaters are known to drive landscape change. This study examines how a debris flow after wildfire impacts on sediment transport from small headwaters (0.02 km2) through a step pool stream system within a larger 14 km2 catchment, which drains into the East Ovens River in SE Australia. Sediment delivery from debris flows was modelled and downstream deposition of sediment was measured using a combination of aerial imagery and field surveys. Particle size distributions were measured for all major deposits. These data were summarised to map sediment flux as a continuous variable over the drainage network. Total deposition throughout the stream network was 39 x 103 m3. Catchment efflux was 61 x 103 m3 (specific sediment yield of 78 ton ha-1), which equates to 400-800 years of background erosion, based on measurements in nearby catchments. Despite the low gradient (ca. 0.1 m m-1) of the main channel there was no systematic downstream sorting in sediment deposits in the catchment. This is due to debris flow processes operating throughout the stream network, with lateral inputs sustaining the process in low gradient channels, except in the most downstream reaches where the flow transitioned towards hyper-concentrated flow. Overall, a large proportion ( 88%) of the eroded fine fraction (<63 micron) exited the catchment, when compared to the overall ratio (55%) of erosion to deposition. The geomorphic legacy of this post-wildfire event depends on scale. In the lower channels (steam order 4-5), where erosion was nearly equal to deposition, the event had no real impact on total sediment volumes stored. In upper channels (stream orders < 3) erosion was widespread but deposition rates were low. So debris flows are really effective at removing sediment from headwaters, but at some scale (between 3th and 4th order channels) they are equally effective at depositing sediment. In these lower reaches the geomorphic legacy of the post-wildfire debris flow is about how channel sediment is distributed rather than how much volume is stored.

The evolution of the Danube gateway between Central and Eastern Paratethys (SE Europe): Insight from numerical modelling of the causes and effects of connectivity between basins and its expression in the sedimentary record

NASA Astrophysics Data System (ADS)

Leever, K. A.; Matenco, L.; Garcia-Castellanos, D.; Cloetingh, S. A. P. L.

2011-04-01

The Pannonian and Dacic Basins in SE Europe are presently connected by the Danube River across the South Carpathians, to which they are in a back-arc and foreland position respectively. Part of the Paratethys realm during the Neogene, open water communication between the basins was interrupted by the Late Miocene uplift of the Carpathians. Different mechanisms have been proposed for the formation of the Danube gateway: capture of the upstream lake or an upstream river or incision of an antecedent river. Estimates on its age range from Late Miocene to Quaternary. A related issue is the effect of the large Mediterranean sea level fall related to the Messinian Salinity Crisis on the Paratethys subbasins, specifically the "isolated" Pannonian Basin. In a synthetic numerical modelling study, using a pseudo-3D code integrating tectonics, surface processes and isostasy, we addressed the causes and effects of changes in connectivity between two large sedimentary basins separated by an elevated barrier. Specifically, we aimed to find the expression of connectivity events in the sedimentary record in general and the consequences for the evolution of the Pannonian-Dacic area in particular. We studied a range of parameters including the geometry and uplift rate of the barrier, downstream sea level change and lithosphere rigidity. We found that changes in connectivity are expressed in the sedimentary record through their effect on base level in the upstream basin and supply in the downstream basin. The most important factors controlling the response are the elevation difference between the basins and the upstream accommodation space at the time of reconnection. The most pronounced effect of reconnection through lake capture is predicted for a large elevation difference and limited upstream accommodation space. Downstream increase in sediment supply is dependent on the latter rather than the reconnection event itself. Of the parameters we tested, the rigidity of the lithosphere was found to be of major importance by its control on sediment loaded subsidence and generation of accommodation space. A downstream sea level change is unlikely to induce capture, but may affect the upstream lake level by enhancing incision in a pre-existing gateway. In the Pannonian-Dacic region, the mechanically weak, continuously subsiding Pannonian lithosphere allowed accommodation of significant volumes of continental sedimentation and as a consequence, transfer of excess sediment to the downstream Dacic Basin was only gradual. The Messinian sea level fall in the Dacic Basin could have been recorded in the Pannonian Basin only if a connection between the basins already existed. More detailed modelling of river incision taking into account lateral differences in erodibility in the South Carpathians will be required to give better time constraints on the formation of the Danube Gateway.

Ensemble Streamflow Forecast Improvements in NYC's Operations Support Tool

NASA Astrophysics Data System (ADS)

Wang, L.; Weiss, W. J.; Porter, J.; Schaake, J. C.; Day, G. N.; Sheer, D. P.

2013-12-01

Like most other water supply utilities, New York City's Department of Environmental Protection (DEP) has operational challenges associated with drought and wet weather events. During drought conditions, DEP must maintain water supply reliability to 9 million customers as well as meet environmental release requirements downstream of its reservoirs. During and after wet weather events, DEP must maintain turbidity compliance in its unfiltered Catskill and Delaware reservoir systems and minimize spills to mitigate downstream flooding. Proactive reservoir management - such as release restrictions to prepare for a drought or preventative drawdown in advance of a large storm - can alleviate negative impacts associated with extreme events. It is important for water managers to understand the risks associated with proactive operations so unintended consequences such as endangering water supply reliability with excessive drawdown prior to a storm event are minimized. Probabilistic hydrologic forecasts are a critical tool in quantifying these risks and allow water managers to make more informed operational decisions. DEP has recently completed development of an Operations Support Tool (OST) that integrates ensemble streamflow forecasts, real-time observations, and a reservoir system operations model into a user-friendly graphical interface that allows its water managers to take robust and defensible proactive measures in the face of challenging system conditions. Since initial development of OST was first presented at the 2011 AGU Fall Meeting, significant improvements have been made to the forecast system. First, the monthly AR1 forecasts ('Hirsch method') were upgraded with a generalized linear model (GLM) utilizing historical daily correlations ('Extended Hirsch method' or 'eHirsch'). The development of eHirsch forecasts improved predictive skill over the Hirsch method in the first week to a month from the forecast date and produced more realistic hydrographs on the tail end of high flow periods. These improvements allowed DEP to more effectively manage water quality control and spill mitigation operations immediately after storm events. Later on, post-processed hydrologic forecasts from the National Weather Service (NWS) including the Advanced Hydrologic Prediction Service (AHPS) and the Hydrologic Ensemble Forecast Service (HEFS) were implemented into OST. These forecasts further increased the predictive skill over the initial statistical models as current basin conditions (e.g. soil moisture, snowpack) and meteorological forecasts (with HEFS) are now explicitly represented. With the post-processed HEFS forecasts, DEP may now truly quantify impacts associated with wet weather events on the horizon, rather than relying on statistical representations of current hydrologic trends. This presentation will highlight the benefits of the improved forecasts using examples from actual system operations.

Solute Response To Arid-Climate Managed-River Flow During Storm Events

NASA Astrophysics Data System (ADS)

McLean, B.; Shock, E.

2006-12-01

Storm pulses are widely used in unmanaged, temperate and subtropical river systems to resolve in-stream surface and subsurface flow components. Resulting catchment-scale hydrochemical mixing models yield insight into mechanisms of solute transport. Managed systems are far more complicated due to the human need for high quality water resources, which drives processes that are superimposed on most, if not all, of the unmanaged components. As an example, an increasingly large portion of the water supply for the Phoenix metropolitan area is derived from multiple surface water sources that are impounded, diverted and otherwise managed upstream from the urban core that consumes the water and produces anthropogenic impacts. During large storm events this managed system is perturbed towards natural behavior as it receives inputs from natural hydrologic pathways in addition to impervious surfaces and storm water drainage channels. Our goals in studying managed river systems during this critical transition state are to determine how the well- characterized behavior of natural systems break down as the system responds then returns to its managed state. Using storm events as perturbations we can contrast an arid managed system with the unmanaged system it approaches during the storm event. In the process, we can extract geochemical consequences specifically related to unknown urban components in the form of chemical fingerprints. The effects of river management on solute behavior were assessed by taking advantage of several anomalously heavy winter storm events in late 2004 and early 2005 using a rigorous sampling routine. Several hundred samples collected between January and October 2005 were analyzed for major ion, isotopic, and trace metal concentrations with 78 individual measurements for each sample. The data are used to resolve managed watershed processes, mechanisms of solute transport and river mixing from anthropogenic inputs. Our results show that concentrations of major solutes change slowly and are independent of discharge downstream from the dams on two major tributaries. This is indicative of reservoir release water. In addition, a third input is derived from the Colorado River via the Central Arizona Project canal system. Cross plots including concentrations of solutes such as nitrate and sulfate from downstream of the confluence indicate at least three end-member sources, as do Piper diagrams using major anion and cation data. Dynamic contributions from natural event water and urban inputs can be resolved from the slowly changing release water, and may dictate the short-term transport of pollutants during the storm-induced transition state.

Three-Dimensional Simulation of Avalanche-Generated Impulse Waves and Evaluation of Lake-Lowering Scenarios at Lake Palcacocha, Peru

NASA Astrophysics Data System (ADS)

Chisolm, R. E.; McKinney, D. C.

2014-12-01

Accelerated retreat of Andean glaciers in recent decades due to a warming climate has caused the emergence and growth of glacial lakes. As these lakes continue to grow, they pose an increasing risk of glacial lake outburst floods (GLOFs). GLOFs can be triggered by moraine failures or by avalanches, rockslides, or ice calving into glacial lakes. For many decades Lake Palcacocha in the Cordillera Blanca, Peru has threatened citizens living in the city of Huaraz which was devastated by a GLOF in 1941. A safety system for Lake Palcacocha was put in place in the 1970's to control the lake level, but the lake has since grown to the point where it is once again dangerous. Overhanging ice from the glaciers above and a relatively low freeboard make the lake vulnerable to avalanches and landslides. Lake Palcacocha is used as a case study to investigate the impact of an avalanche event on the lake dynamics. Three-dimensional lake modeling in the context of glacial hazards is not common, but 3D simulations can enhance our understanding of avalanche-generated impulse waves and their downstream impacts. In this work, a 3D hydrodynamic model is used to simulate the generation of an impulse wave from an avalanche falling into the lake, wave propagation, and overtopping of the terminal moraine. These results are used as inputs to a downstream model to predict the impact from a GLOF. As lowering the level of the lake is the most likely mitigation alternative, several scenarios are considered to evaluate the impact from avalanche events with a reduction in the lake level. The results of this work can be used to evaluate the effectiveness of the current lake management system and potential lake-lowering alternatives. Use of a robust 3D lake model enables more accurate predictions of peak flows during GLOF events and the time scales of these events so that mitigation strategies can be developed that reduce the risk to communities living downstream of hazardous lakes.

Modeling Total Dissolved Gas for Optimal Operation of Multireservoir Systems

DOE PAGES

Politano, Marcela; Castro, Alejandro; Hadjerioua, Boualem

2017-02-09

One important environmental issue of hydropower in the Columbia and Snake River Basins (Pacific Northwest region of United States) is elevated total dissolved gas (TDG) downstream of a dam, which has the potential to cause gas bubble disease in affected fish. Gas supersaturation in the Columbia River Basin primarily occurs due to dissolution of bubbles entrained during spill events. This paper presents a physically based TDG model that can be used to optimize spill operations in multireservoir hydropower systems. Independent variables of the model are forebay TDG, tailwater elevation, spillway and powerhouse discharges, project head, and environmental parameters such asmore » temperature and atmospheric pressure. The model contains seven physically meaningful experimental parameters, which were calibrated and validated against TDG data collected downstream of Rock Island Dam (Washington) from 2008 to 2012. In conclusion, a sensitivity analysis was performed to increase the understanding of the relationships between TDG downstream of the dam and processes such as air entrainment, lateral powerhouse flow, and dissolution.« less

Downscaling GLOF Hazards: An in-depth look at the Nepal Himalaya

NASA Astrophysics Data System (ADS)

Rounce, D.; McKinney, D. C.; Lala, J.

2016-12-01

The Nepal Himalaya house a large number of glacial lakes that pose a flood hazard to downstream communities and infrastructure. The modeling of the entire process chain of these glacial lake outburst floods (GLOFs) has been advancing rapidly in recent years. The most common cause of failure is mass movement entering the glacial lake, which triggers a tsunami-like wave that breaches the terminal moraine and causes the ensuing downstream flood. Unfortunately, modeling the avalanche, the breach of the moraine, and the downstream flood requires a large amount of site-specific information and can be very labor-intensive. Therefore, these detailed models need to be paired with large-scale hazard assessments that identify the glacial lakes that are the biggest threat and the triggering events that threaten these lakes. This study discusses the merger of a large-scale, remotely-based hazard assessment with more detailed GLOF models to show how GLOF hazard modeling can be downscaled in the Nepal Himalaya.

The effects of chromium(VI) on the thioredoxin system: Implications for redox regulation

PubMed Central

Myers, Charles R.

2014-01-01

Hexavalent chromium [Cr(VI)] compounds are highly redox active and have long been recognized as potent cytotoxins and carcinogens. The intracellular reduction of Cr(VI) generates reactive Cr intermediates, which are themselves strong oxidants, as well as superoxide, hydrogen peroxide, and hydroxyl radical. These probably contribute to the oxidative damage and effects on redox-sensitive transcription factors that have been reported. However, the identification of events that initiate these signaling changes has been elusive. More recent studies show that Cr(VI) causes irreversible inhibition of thioredoxin reductase (TrxR) and oxidation of thioredoxin (Trx) and peroxiredoxin (Prx). Mitochondrial Trx2/Prx3 are more sensitive to Cr(VI) treatment than cytosolic Trx1/Prx1, although both compartments show thiol oxidation with higher doses or longer treatments. Thiol redox proteomics demonstrate that Trx2, Prx3, and Trx1 are among the most sensitive proteins in cells to Cr(VI) treatment. Their oxidation could therefore represent initiating events that have widespread implications for protein thiol redox control and for multiple aspects of redox signaling. This review summarizes the effects of Cr(VI) on the TrxR/Trx system and how these events could influence a number of downstream redox signaling systems that are influenced by Cr(VI) exposure. Some of the signaling events discussed include the activation of apoptosis signal regulating kinase and MAP kinases (p38 and JNK) and the modulation of a number of redox-sensitive transcription factors including AP-1, NF-κB, p53, and Nrf2. PMID:22542445

Spatio-temporal variation in bed-material load using dune topography collected during a severe flood on the coastal Trinity River, east TX, USA

NASA Astrophysics Data System (ADS)

Mason, J.; Mohrig, D. C.

2015-12-01

A series of six repeat surveys along 27 kilometers of the coastal Trinity River in east Texas, USA, reveal the temporal and spatial changes in bed material load during and following a historically large flood. The river event was above the National Weather Service flood stage for 55 days at the Liberty USGS station, and had a maximum discharge of about 80,000 cfs. As a community, we are beginning to understand how fluvial geomorphology is influenced by the backwater effect, but we still lack an understanding of how the bed-material transport adjusts to accommodate larger-scale changes in river bend pattern and kinematics. Survey data from this project includes sidescan sonar along the channel centerline, multibeam bathymetry, and channel bed sediment samples. In combination, this data set provides new insight into how and when bed material, primarily medium sand with some pebbles, moves through this region, and how this connects to previously observed changes in channel geometry (including downstream decreases in channel width to depth ratio, bar form volume and surface area, and lateral migration rates of river bends). Preliminary examination of sidescan sonar of two bends within the survey area, one upstream and one downstream, reveal a striking difference in bedform behavior in response to the changing hydrograph. Upstream, bedforms decrease 80% in height and 83% in length and increase in 3-dimensionality throughout the extended peak flow. During the falling limb of the flood these same bedforms increase in size as they become more laterally continuous and straight-crested. Downstream, 3-dimensional bedforms decrease 80% in height and 87% in length throughout the extended peak flow and then remain this size during the falling limb of the flood. This presentation will discuss these results with respect to backwater dynamics, sediment supply and transport, implications for coastal geomorphology as well as sediment delivery into deltaic systems.

MULTI-SPACECRAFT ANALYSIS OF ENERGETIC HEAVY ION AND INTERPLANETARY SHOCK PROPERTIES IN ENERGETIC STORM PARTICLE EVENTS NEAR 1 au

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ebert, R. W.; Dayeh, M. A.; Desai, M. I.

2016-11-10

We examine the longitude distribution of and relationship between interplanetary (IP) shock properties and ∼0.1–20 MeV nucleon{sup -1} O and Fe ions during seven multi-spacecraft energetic storm particle (ESP) events at 1 au. These ESP events were observed at two spacecraft and were primarily associated with low Mach number, quasi-perpendicular shocks. Key observations include the following: (i) the Alfvén Mach number increased from east to west of the coronal mass ejection source longitude, while the shock speed, compression ratios, and obliquity showed no clear dependence; (ii) the O and Fe time intensity profiles and peak intensities varied significantly between longitudinallymore » separated spacecraft observing the same event, the peak intensities being larger near the nose and smaller along the flank of the IP shock; (iii) the O and Fe peak intensities had weak to no correlations with the shock parameters; (iv) the Fe/O time profiles showed intra-event variations upstream of the shock that disappeared downstream of the shock, where values plateaued to those comparable to the mean Fe/O of solar cycle 23; (v) the O and Fe spectral index ranged from ∼1.0 to 3.4, the Fe spectra being softer in most events; and (vi) the observed spectral index was softer than the value predicted from the shock compression ratio in most events. We conclude that while the variations in IP shock properties may account for some variations in O and Fe properties within these multi-spacecraft events, detailed examination of the upstream seed population and IP turbulence, along with modeling, are required to fully characterize these observations.« less

Comparative effects of oil palm and selective logging on erosion, river channels and water chemistry in Malaysian steeplands

NASA Astrophysics Data System (ADS)

Walsh, Rory; Nainar, Anand; Nurhidayu, Siti; Higton, Sam; Annammala, Kogilavani; Wall, Katy; Bidin, Kawi; Blake, William; Darling, Isabella

2017-04-01

Oil palm land-use has expanded greatly in recent decades in SE Asia and other parts of the wet tropics, including to steepland areas, where bench-terraced landscaping is involved. Retaining (and sometimes restoring) riparian forest strips and rainforest fragments on the steepest slopes have been adopted as elements of strategies designed to reduce adverse effects on runoff generation, erosion, downstream sedimentation, flooding and pollutional problems - as well as biodiversity and emissions. Results of catchment monitoring, soil erosion and sediment fingerprinting research in oil palm and selectively logged steeplands of eastern Sabah and Peninsular Malaysia are presented. The evidence indicates the greater scale and temporal persistence of effects that oil palm land-use (compared with selective logging) has had on suspended sediment dynamics, soil erosion, downstream sedimentation, channel geometry and dynamics and river pollution. The importance of (1) high densities of roads and tracks and (2) relatively impermeable bench-terraced terrain in enhancing runoff, sediment and nutrient outputs in storm events is stressed. Influences of oil palm management practices including riparian forest strips in increasing or reducing these effects are critically reviewed and ways of increasing the effectiveness of riparian forest strips are proposed. The design and rationale of current projects exploring and testing consequences of existing and proposed improved land management practices are briefly described. The key importance of involvement of people from the oil palm industry (including multinational companies, smallholders and their organizations) and Government bodies that are responsible for land-use policies and land management practices is stressed.

40 CFR 80.1235 - What gasoline is subject to the benzene requirements of this subpart?

Code of Federal Regulations, 2010 CFR

2010-07-01

...) Oxygenate added to finished gasoline, RBOB, or CBOB downstream of the refinery that produced the gasoline or import facility where the gasoline was imported. (3) Butane added to finished gasoline, RBOB, CBOB... boats that are used only in sanctioned racing events, provided that — (i) Product transfer documents...

40 CFR 80.1235 - What gasoline is subject to the benzene requirements of this subpart?

Code of Federal Regulations, 2013 CFR

2013-07-01

...) Oxygenate added to finished gasoline, RBOB, or CBOB downstream of the refinery that produced the gasoline or import facility where the gasoline was imported. (3) Butane added to finished gasoline, RBOB, CBOB... boats that are used only in sanctioned racing events, provided that — (i) Product transfer documents...

40 CFR 80.1235 - What gasoline is subject to the benzene requirements of this subpart?

Code of Federal Regulations, 2012 CFR

2012-07-01

...) Oxygenate added to finished gasoline, RBOB, or CBOB downstream of the refinery that produced the gasoline or import facility where the gasoline was imported. (3) Butane added to finished gasoline, RBOB, CBOB... boats that are used only in sanctioned racing events, provided that — (i) Product transfer documents...

Mind over Matter: Reappraising Arousal Improves Cardiovascular and Cognitive Responses to Stress

ERIC Educational Resources Information Center

Jamieson, Jeremy P.; Nock, Matthew K.; Mendes, Wendy Berry

2012-01-01

Researchers have theorized that changing the way we think about our bodily responses can improve our physiological and cognitive reactions to stressful events. However, the underlying processes through which mental states improve downstream outcomes are not well understood. To this end, we examined whether reappraising stress-induced arousal could…

Rio Grande Lidar Bank Erosion Monitoring: Preliminary 2007-2008 Results and Survey Design Considerations

DTIC Science & Technology

2010-09-01

was reexposed by erosion following the initial event (Figure 9). Erosion of the fan toe in the vicinity of the downstream array is primarily...Digitally Capture the Topography of Sand Dunes in High Spatial Resolution. Earth Surface Processes and Landforms 29:391-398. Queensland, G. 2008

Building an Adverse Outcome Pathway Framework through HTS Data and Literature Mining Integration (FutureToxII)

EPA Science Inventory

Interpreting EPA’s ToxCast in vitro assay data in the context of Adverse Outcome Pathway (AOP) development is a significant challenge. While chemical activation in these assays may shed light on the molecular initiating event, the downstream effect of these activities at higher ...

Chemokine receptor binding and signal transduction in native cells of the central nervous system.

PubMed

Davis, Christopher N; Chen, Shuzhen; Boehme, Stefen A; Bacon, Kevin B; Harrison, Jeffrey K

2003-04-01

Chemokine receptors belong to the superfamily of seven-transmembrane-spanning, G-protein-coupled receptors, and their expression by central nervous system cells is clearly documented. As this gene family has become the target of novel therapeutic development, the analysis of these receptors requires radioligand binding techniques as well as methods that entail assessing receptor stimulation of signal transduction pathways. Herein, we describe specific protocols for measuring radiolabeled chemokine binding to their cognate receptors on cultured glial cells as well as to receptors expressed in heterologous cell systems. Multiple downstream signaling pathways, including intracellular calcium influx and receptor-dependent kinase activation, are associated with chemokine receptor stimulation. Protocols for measuring these signaling events in chemokine-receptor-expressing cells are also presented.

Gas turbine premixer with internal cooling

DOEpatents

York, William David; Johnson, Thomas Edward; Lacy, Benjamin Paul; Stevenson, Christian Xavier

2012-12-18

A system that includes a turbine fuel nozzle comprising an air-fuel premixer. The air-fuel premixed includes a swirl vane configured to swirl fuel and air in a downstream direction, wherein the swirl vane comprises an internal coolant path from a downstream end portion in an upstream direction through a substantial length of the swirl vane.

The role of headwater streams in downstream water quality

USGS Publications Warehouse

Alexander, R.B.; Boyer, E.W.; Smith, R.A.; Schwarz, G.E.; Moore, R.B.

2007-01-01

Knowledge of headwater influences on the water-quality and flow conditions of downstream waters is essential to water-resource management at all governmental levels; this includes recent court decisions on the jurisdiction of the Federal Clean Water Act (CWA) over upland areas that contribute to larger downstream water bodies. We review current watershed research and use a water-quality model to investigate headwater influences on downstream receiving waters. Our evaluations demonstrate the intrinsic connections of headwaters to landscape processes and downstream waters through their influence on the supply, transport, and fate of water and solutes in watersheds. Hydrological processes in headwater catchments control the recharge of subsurface water stores, flow paths, and residence times of water throughout landscapes. The dynamic coupling of hydrological and biogeochemical processes in upland streams further controls the chemical form, timing, and longitudinal distances of solute transport to downstream waters. We apply the spatially explicit, mass-balance watershed model SPARROW to consider transport and transformations of water and nutrients throughout stream networks in the northeastern United States. We simulate fluxes of nitrogen, a primary nutrient that is a water-quality concern for acidification of streams and lakes and eutrophication of coastal waters, and refine the model structure to include literature observations of nitrogen removal in streams and lakes. We quantify nitrogen transport from headwaters to downstream navigable waters, where headwaters are defined within the model as first-order, perennial streams that include flow and nitrogen contributions from smaller, intermittent and ephemeral streams. We find that first-order headwaters contribute approximately 70% of the mean-annual water volume and 65% of the nitrogen flux in second-order streams. Their contributions to mean water volume and nitrogen flux decline only marginally to about 55% and 40% in fourth- and higher-order rivers that include navigable waters and their tributaries. These results underscore the profound influence that headwater areas have on shaping downstream water quantity and water quality. The results have relevance to water-resource management and regulatory decisions and potentially broaden understanding of the spatial extent of Federal CWA jurisdiction in U.S. waters. ?? 2007 American Water Resources Association.

The Role of Headwater Streams in Downstream Water Quality1

PubMed Central

Alexander, Richard B; Boyer, Elizabeth W; Smith, Richard A; Schwarz, Gregory E; Moore, Richard B

2007-01-01

Knowledge of headwater influences on the water-quality and flow conditions of downstream waters is essential to water-resource management at all governmental levels; this includes recent court decisions on the jurisdiction of the Federal Clean Water Act (CWA) over upland areas that contribute to larger downstream water bodies. We review current watershed research and use a water-quality model to investigate headwater influences on downstream receiving waters. Our evaluations demonstrate the intrinsic connections of headwaters to landscape processes and downstream waters through their influence on the supply, transport, and fate of water and solutes in watersheds. Hydrological processes in headwater catchments control the recharge of subsurface water stores, flow paths, and residence times of water throughout landscapes. The dynamic coupling of hydrological and biogeochemical processes in upland streams further controls the chemical form, timing, and longitudinal distances of solute transport to downstream waters. We apply the spatially explicit, mass-balance watershed model SPARROW to consider transport and transformations of water and nutrients throughout stream networks in the northeastern United States. We simulate fluxes of nitrogen, a primary nutrient that is a water-quality concern for acidification of streams and lakes and eutrophication of coastal waters, and refine the model structure to include literature observations of nitrogen removal in streams and lakes. We quantify nitrogen transport from headwaters to downstream navigable waters, where headwaters are defined within the model as first-order, perennial streams that include flow and nitrogen contributions from smaller, intermittent and ephemeral streams. We find that first-order headwaters contribute approximately 70% of the mean-annual water volume and 65% of the nitrogen flux in second-order streams. Their contributions to mean water volume and nitrogen flux decline only marginally to about 55% and 40% in fourth- and higher-order rivers that include navigable waters and their tributaries. These results underscore the profound influence that headwater areas have on shaping downstream water quantity and water quality. The results have relevance to water-resource management and regulatory decisions and potentially broaden understanding of the spatial extent of Federal CWA jurisdiction in U.S. waters. PMID:22457565

Application of Integral Pumping Tests to estimate the influence of losing streams on groundwater quality

NASA Astrophysics Data System (ADS)

Leschik, S.; Musolff, A.; Reinstorf, F.; Strauch, G.; Schirmer, M.

2009-05-01

Urban streams receive effluents of wastewater treatment plants and untreated wastewater during combined sewer overflow events. In the case of losing streams substances, which originate from wastewater, can reach the groundwater and deteriorate its quality. The estimation of mass flow rates Mex from losing streams to the groundwater is important to support groundwater management strategies, but is a challenging task. Variable inflow of wastewater with time-dependent concentrations of wastewater constituents causes a variable water composition in urban streams. Heterogeneities in the structure of the streambed and the connected aquifer lead, in combination with this variable water composition, to heterogeneous concentration patterns of wastewater constituents in the vicinity of urban streams. Groundwater investigation methods based on conventional point sampling may yield unreliable results under these conditions. Integral Pumping Tests (IPT) can overcome the problem of heterogeneous concentrations in an aquifer by increasing the sampled volume. Long-time pumping (several days) and simultaneous sampling yields reliable average concentrations Cav and mass flow rates Mcp for virtual control planes perpendicular to the natural flow direction. We applied the IPT method in order to estimate Mex of a stream section in Leipzig (Germany). The investigated stream is strongly influenced by combined sewer overflow events. Four pumping wells were installed up- and downstream of the stream section and operated for a period of five days. The study was focused on four inorganic (potassium, chloride, nitrate and sulfate) and two organic (caffeine and technical-nonylphenol) wastewater constituents with different transport properties. The obtained concentration-time series were used in combination with a numerical flow model to estimate Mcp of the respective wells. The difference of the Mcp's between up- and downstream wells yields Mex of wastewater constituents that increase downstream of the stream. In order to confirm the obtained Mcp's concentrations of additional measurements in the investigated stream were compared with the concentrations in the groundwater up- and downstream of the stream section. The results revealed increased Mcp's downstream of the stream section for chloride, potassium and nitrate, whereas Mcp of sulfate was decreased. Micropollutants caffeine and technical-nonylphenol showed decreased Mcp's downstream of the stream section in 75 % of the cases. Values of Mex could only be given for chloride, potassium, nitrate and caffeine. The comparison of concentrations in the stream with those in the groundwater points to the streambed as a zone where mass accumulation and degradation processes occur. The obtained results imply that the applied method can provide reliable data about the influence of losing streams on groundwater quality.

The Evolutionary Fate of the Genes Encoding the Purine Catabolic Enzymes in Hominoids, Birds, and Reptiles

PubMed Central

Keebaugh, Alaine C.; Thomas, James W.

2010-01-01

Gene loss has been proposed to play a major role in adaptive evolution, and recent studies are beginning to reveal its importance in human evolution. However, the potential consequence of a single gene-loss event upon the fates of functionally interrelated genes is poorly understood. Here, we use the purine metabolic pathway as a model system in which to explore this important question. The loss of urate oxidase (UOX) activity, a necessary step in this pathway, has occurred independently in the hominoid and bird/reptile lineages. Because the loss of UOX would have removed the functional constraint upon downstream genes in this pathway, these downstream genes are generally assumed to have subsequently deteriorated. In this study, we used a comparative genomics approach to empirically determine the fate of UOX itself and the downstream genes in five hominoids, two birds, and a reptile. Although we found that the loss of UOX likely triggered the genetic deterioration of the immediate downstream genes in the hominoids, surprisingly in the birds and reptiles, the UOX locus itself and some of the downstream genes were present in the genome and predicted to encode proteins. To account for the variable pattern of gene retention and loss after the inactivation of UOX, we hypothesize that although gene loss is a common fate for genes that have been rendered obsolete due to the upstream loss of an enzyme a metabolic pathway, it is also possible that same lack of constraint will foster the evolution of new functions or allow the optimization of preexisting alternative functions in the downstream genes, thereby resulting in gene retention. Thus, adaptive single-gene losses have the potential to influence the long-term evolutionary fate of functionally interrelated genes. PMID:20106906

The evolutionary fate of the genes encoding the purine catabolic enzymes in hominoids, birds, and reptiles.

PubMed

Keebaugh, Alaine C; Thomas, James W

2010-06-01

Gene loss has been proposed to play a major role in adaptive evolution, and recent studies are beginning to reveal its importance in human evolution. However, the potential consequence of a single gene-loss event upon the fates of functionally interrelated genes is poorly understood. Here, we use the purine metabolic pathway as a model system in which to explore this important question. The loss of urate oxidase (UOX) activity, a necessary step in this pathway, has occurred independently in the hominoid and bird/reptile lineages. Because the loss of UOX would have removed the functional constraint upon downstream genes in this pathway, these downstream genes are generally assumed to have subsequently deteriorated. In this study, we used a comparative genomics approach to empirically determine the fate of UOX itself and the downstream genes in five hominoids, two birds, and a reptile. Although we found that the loss of UOX likely triggered the genetic deterioration of the immediate downstream genes in the hominoids, surprisingly in the birds and reptiles, the UOX locus itself and some of the downstream genes were present in the genome and predicted to encode proteins. To account for the variable pattern of gene retention and loss after the inactivation of UOX, we hypothesize that although gene loss is a common fate for genes that have been rendered obsolete due to the upstream loss of an enzyme a metabolic pathway, it is also possible that same lack of constraint will foster the evolution of new functions or allow the optimization of preexisting alternative functions in the downstream genes, thereby resulting in gene retention. Thus, adaptive single-gene losses have the potential to influence the long-term evolutionary fate of functionally interrelated genes.

Two year operational experience with the TPS vacuum system

NASA Astrophysics Data System (ADS)

Yang, Y. C.; Chan, C. K.; Sheng, I. C.; Huang, I. T.; Y Chung, J.; Liang, C. C.

2017-07-01

The Taiwan Photon Source (TPS), a 3-GeV third generation synchrotron light source, was commissioned in 2014 December and is now currently operated in top-up mode at 300mA for users. During the past two years, the machine was completed to meet design goals with among others the installation of superconducting cavities (SRF), the installation of insertion devices (ID) and the correction of vacuum chamber structure downstream from the IDs. The design goal of 500mA beam current was achieved with a total accumulated beam dose of more than 1000Ah, resulting in three orders of magnitude reduction of out-gassing. As the beam current was increased, a few vacuum problems were encountered, including vacuum leaks, unexpected pressure bursts, etc. Vacuum related issues including high pressure events, lessons learned and operational experience will be presented and discussed in this paper.

Behavioral and physiological adaptations to high-flow velocities in chubs (Gila spp.) native to Southwestern USA.

PubMed

Moran, Clinton J; Gerry, Shannon P; O'Neill, Matthew W; Rzucidlo, Caroline L; Gibb, Alice C

2018-05-18

Morphological streamlining is often associated with physiological advantages for steady swimming in fishes. Though most commonly studied in pelagic fishes, streamlining also occurs in fishes that occupy high-flow environments. Before the installation of dams and water diversions, bonytail (Cyprinidae, Gila elegans ), a fish endemic to the Colorado River (USA), regularly experienced massive, seasonal flooding events. Individuals of G. elegans display morphological characteristics that may facilitate swimming in high-flow conditions, including a narrow caudal peduncle and a high aspect ratio caudal fin. We tested the hypothesis that these features improve sustained swimming performance in bonytail by comparing locomotor performance in G. elegans with that of the closely related roundtail chub ( Gila robusta ) and two non-native species, rainbow trout ( Oncorhynchus mykiss ) and smallmouth bass ( Micropterus dolomieu ), using a Brett-style respirometer and locomotor step-tests. Gila elegans had the lowest estimated drag coefficient and the highest sustained swimming speeds relative to the other three species. There were no detectible differences in locomotor energetics during steady swimming among the four species. When challenged by high-velocity water flows, the second native species examined in this study, G. robusta , exploited the boundary effects in the flow tank by pitching forward and bracing the pelvic and pectoral fins against the acrylic tank bottom to 'hold station'. Because G. robusta can station hold to prevent being swept downstream during high flows and G. elegans can maintain swimming speeds greater than those of smallmouth bass and rainbow trout with comparable metabolic costs, we suggest that management agencies could use artificial flooding events to wash non-native competitors downstream and out of the Colorado River habitat. © 2018. Published by The Company of Biologists Ltd.

Habitat and movement of lake sturgeon in the upper Mississippi River system, USA

USGS Publications Warehouse

Knights, Brent C.; Vallazza, Jonathon M.; Zigler, Steven J.; Dewey, Michael R.

2002-01-01

Lake sturgeon Acipenser fluvescens, which are now protected from harvest, are considered rare in the upper Mississippi River and little information is available on the remaining populations. Transmitters were implanted into 31 lake sturgeon from two sites in the upper Mississippi River to describe their habitats and movement. The areas surrounding the tagging sites were core areas for both groups of lake sturgeon based on the high use (about 50% of locations by group) and frequent return to these areas by many of the tagged fish. Core areas contained sites with unique hydraulic characteristics, such that depositional substrates were common yet flow was present; these areas probably provide important feeding habitat for lake sturgeon. Minimal geographical overlap in range occurred between groups, suggesting that river reaches and associated core areas were unique to groups or substocks of fish. Lake sturgeon exhibited complex movement behaviors and had ranges of 3-198 km (median, 56 km) during the study. Tagged fish moved both downstream and upstream through upper Mississippi River navigation dams. However, dams appeared to be intermittent barriers to upstream passage because upstream passage events (10 fish, 19 passages) were fewer than downstream events (13 fish, 35 passages). Extensive use of the Wisconsin River by one group of lake sturgeon tagged in the upper Mississippi River has implications regarding management of a threatened population that transcends regulatory boundaries. Our study indicates that lake sturgeon In the upper Mississippi River system share many movement and habitat use characteristics with populations in other systems. However, significant data gaps preclude development of cogent management strategies, including information on population numbers and dynamics, identification of spawning areas, relations between groups, and assessment of the effects of commercial navigation.

Applications of turbidity monitoring to forest management in California.

PubMed

Harris, Richard R; Sullivan, Kathleen; Cafferata, Peter H; Munn, John R; Faucher, Kevin M

2007-09-01

Many California streams have been adversely affected by sedimentation caused by historic and current land uses, including timber harvesting. The impacts of timber harvesting and logging transportation systems on erosion and sediment delivery can be directly measured, modeled, or inferred from water quality measurements. California regulatory agencies, researchers, and land owners have adopted turbidity monitoring to determine effects of forest management practices on suspended sediment loads and water quality at watershed, project, and site scales. Watershed-scale trends in sediment discharge and responses to current forest practices may be estimated from data collected at automated sampling stations that measure turbidity, stream flow, suspended sediment concentrations, and other water quality parameters. Future results from these studies will provide a basis for assessing the effectiveness of modern forest practice regulations in protecting water quality. At the project scale, manual sampling of water column turbidity during high stream flow events within and downstream from active timber harvest plans can identify emerging sediment sources. Remedial actions can then be taken by managers to prevent or mitigate water quality impacts. At the site scale, manual turbidity sampling during storms or high stream flow events at sites located upstream and downstream from new, upgraded, or decommissioned stream crossings has proven to be a valuable way to determine whether measures taken to prevent post-construction erosion and sediment production are effective. Turbidity monitoring at the project and site scales is therefore an important tool for adaptive management. Uncertainty regarding the effects of current forest practices must be resolved through watershed-scale experiments. In the short term, this uncertainty will stimulate increased use of project and site-scale monitoring.

PAR1 deletions downstream of SHOX are the most frequent defect in a Spanish cohort of Léri-Weill dyschondrosteosis (LWD) probands.

PubMed

Benito-Sanz, Sara; del Blanco, Darya Gorbenko; Aza-Carmona, Miriam; Magano, Luis F; Lapunzina, Pablo; Argente, Jesús; Campos-Barros, Angel; Heath, Karen E

2006-10-01

Léri-Weill dyschondrosteosis (LWD) is a skeletal dysplasia characterized by disproportionate short stature and Madelung deformity. Mutations or deletions of the SHOX gene have been previously identified as the main cause of LWD. We recently identified the existence of a second class of pseudoautosomal region 1 (PAR1) deletions which do not include SHOX, implicated in the etiopathogenesis of LWD. The deletions map at least 30-250 kb downstream of SHOX, are variable in size and clearly cosegregate with the LWD phenotype. In order to determine the frequency of this new type of deletions in the Spanish population we analyzed the distribution of PAR1 defects, including the screening of SHOX deletions, mutations, and PAR1 deletions downstream of SHOX, in a total of 26 LWD probands by a combination of MLPA, microsatellite analysis, SNP genotyping, dHPLC, and DNA sequencing. A molecular defect was identified in 16/26 LWD patients (61.5%): 10 PAR1 deletions downstream of SHOX, four SHOX encompassing deletions, and two SHOX mutations. No apparent phenotypic differences were observed between patients with SHOX defects and those with PAR1 deletions downstream of SHOX. In the examined cohort of Spanish LWD probands, PAR1 deletions downstream of SHOX represent the highest proportion of identified mutations (38%) compared to SHOX deletions (15%) and mutations (8%). As a consequence of our findings, the screening of this region should be included in the routine genetic testing of LWD. Also, LWD patients who tested negative for SHOX defects should be re-evaluated for PAR1 deletions downstream of SHOX.

Modeling a Glacial Lake Outburst Flood Process Chain: The Case of Lake Palcacocha and Huaraz, Peru

NASA Astrophysics Data System (ADS)

Chisolm, Rachel; Somos-Valenzuela, Marcelo; Rivas Gomez, Denny; McKinney, Daene C.; Portocarrero Rodriguez, Cesar

2016-04-01

One of the consequences of recent glacier recession in the Cordillera Blanca, Peru, is the risk of Glacial Lake Outburst Floods (GLOFs) from lakes that have formed at the base of retreating glaciers. GLOFs are often triggered by avalanches falling into glacial lakes, initiating a chain of processes that may culminate in significant inundation and destruction downstream. This paper presents simulations of all of the processes involved in a potential GLOF originating from Lake Palcacocha, the source of a previously catastrophic GLOF on December 13, 1941, 1800 people in the city of Huaraz, Peru. The chain of processes simulated here includes: (1) avalanches above the lake; (2) lake dynamics resulting from the avalanche impact, including wave generation, propagation, and run-up across lakes; (3) terminal moraine overtopping and dynamic moraine erosion simulations to determine the possibility of breaching; (4) flood propagation along downstream valleys; and (5) inundation of populated areas. The results of each process feed into simulations of subsequent processes in the chain, finally resulting in estimates of inundation in the city of Huaraz. The results of the inundation simulations were converted into flood intensity and hazard maps (based on an intensity-likelihood matrix) that may be useful for city planning and regulation. Three avalanche events with volumes ranging from 0.5-3 x 106 m3 were simulated, and two scenarios of 15 m and 30 m lake lowering were simulated to assess the potential of mitigating the hazard level in Huaraz. For all three avalanche events, three-dimensional hydrodynamic models show large waves generated in the lake from the impact resulting in overtopping of the damming-moraine. Despite very high discharge rates (up to 63.4 x 103 m3/s), the erosion from the overtopping wave did not result in failure of the damming-moraine when simulated with a hydro-morphodynamic model using excessively conservative soil characteristics that provide very little erosion resistance. With the current lake level, all three avalanche events result in inundation in Huaraz, and the resulting hazard map shows a total affected area of 2.01 km2, most of which is in the high-hazard category. Lowering the lake has the potential to reduce the affected area by up to 35% resulting in a smaller portion of the inundated area in the high-hazard category.

Influence of urban surface properties and rainfall characteristics on surface water flood outputs - insights from a physical modelling environment

NASA Astrophysics Data System (ADS)

Green, Daniel; Pattison, Ian; Yu, Dapeng

2017-04-01

Surface water (pluvial) flooding occurs when excess rainfall from intense precipitation events is unable to infiltrate into the subsurface or drain via natural or artificial drainage channels. Surface water flood events pose a major hazard to urban regions across the world, with nearly two thirds of flood damages in the UK being caused by surface water flood events. The perceived risk of surface water flooding appears to have increased in recent years due to several factors, including (i) precipitation increases associated with climatic change and variability; (ii) population growth meaning more people are occupying flood risk areas, and; (iii) land-use changes. Because urban areas are often associated with a high proportion of impermeable land-uses (e.g. tarmacked or paved surfaces and buildings) and a reduced coverage of vegetated, permeable surfaces, urban surface water flood risk during high intensity precipitation events is often exacerbated. To investigate the influence of urbanisation and terrestrial factors on surface water flood outputs, rainfall intensity, catchment slope, permeability, building density/layout scenarios were designed within a novel, 9m2 physical modelling environment. The two-tiered physical model used consists of (i) a low-cost, nozzle-type rainfall simulator component which is able to simulate consistent, uniformly distributed rainfall events of varying duration and intensity, and; (ii) a reconfigurable, modular plot surface. All experiments within the physical modelling environment were subjected to a spatiotemporally uniform 45-minute simulated rainfall event, while terrestrial factors on the physical model plot surface were altered systematically to investigate their hydrological response on modelled outflow and depth profiles. Results from the closed, controlled physical modelling experiments suggest that meteorological factors, such as the duration and intensity of simulated rainfall, and terrestrial factors, such as model slope, surface permeability and building density have a significant influence on physical model hydrological outputs. For example, changes in building density across the urban model catchment are shown to result in hydrographs having (i) a more rapid rising limb; (ii) higher peak discharges; (iii) a reduction in the total hydrograph time, and; (iv) a faster falling limb, with the dense building scenario having a 22% increase in peak discharge when compared to the no building scenario. Furthermore, the layout of buildings across the plot surface and their proximity to the outflow unit (i.e. downstream, upstream or to the side of the physical model outlet) is shown to influence outflow hydrograph response, with downstream concentrated building scenarios resulting in a delay in hydrograph onset time and a reduction in the time of the total outflow hydrograph event.

Streamflow, infiltration, and recharge in Arroyo Hondo, New Mexico: Chapter F in Ground-water recharge in the arid and semiarid southwestern United States (Professional Paper 1703)

USGS Publications Warehouse

Moore, Stephanie J.; Stonestrom, David A.; Constantz, Jim; Ferré, Ty P.A.; Leake, Stanley A.

2007-01-01

Infiltration events in channels that flow only sporadically produce focused recharge to the Tesuque aquifer in the Española Basin. The current study examined the quantity and timing of streamflow and associated infiltration in Arroyo Hondo, an unregulated mountain-front stream that enters the basin from the western slope of the Sangre de Cristo Mountains. Traditional methods of stream gaging were combined with environmental-tracer based methods to provide the estimates. The study was conducted during a three-year period, October 1999–October 2002. The period was characterized by generally low precipitation and runoff. Summer monsoonal rains produced four brief periods of streamflow in water year 2000, only three of which extended beyond the mountain front, and negligible runoff in subsequent years. The largest peak flow during summer monsoon events was 0.59 cubic meters per second. Snowmelt was the main contributor to annual streamflow. Snowmelt produced more cumulative flow downstream from the mountain front during the study period than summer monsoonal rains.The presence or absence of streamflow downstream of the mountain front was determined by interpretation of streambed thermographs. Infiltration rates were estimated by numerical modeling of transient vertical streambed temperature profiles. Snowmelt extended throughout the instrumented reach during the spring of 2001. Flow was recorded at a station two kilometers downstream from the mountain front for six consecutive days in March. Inverse modeling of this event indicated an average infiltration rate of 1.4 meters per day at this location. For the entire study reach, the estimated total annual volume of infiltration ranged from 17,100 to 246,000 m3 during water years 2000 and 2001. During water year 2002, due to severe drought, streamflow and streambed infiltration in the study reach were both zero.

Black liquor and the hangover effect: fish assemblage recovery dynamics following a pulse disturbance

PubMed Central

Piller, Kyle R; Geheber, Aaron D

2015-01-01

Anthropogenic perturbations impact aquatic systems causing wide-ranging responses, from assemblage restructuring to assemblage recovery. Previous studies indicate the duration and intensity of disturbances play a role in the dynamics of assemblage recovery. In August 2011, the Pearl River, United States, was subjected to a weak black liquor spill from a paper mill which resulted in substantial loss of fish in a large stretch of the main channel. We quantified resilience and recovery of fish assemblage structure in the impacted area following the event. We compared downstream (impacted) assemblages to upstream (unimpacted) assemblages to determine initial impacts on structure. Additionally, we incorporated historic fish collections (1988–2011) to examine impacts on assemblage structure across broad temporal scales. Based on NMDS, upstream and downstream sites generally showed similar assemblage structure across sample periods with the exception of the 2 months postdischarge, where upstream and downstream sites visually differed. Multivariate analysis of variance (PERMANOVA) indicated significant seasonal variation among samples, but found no significant interaction between impacted and unimpacted assemblages following the discharge event. However, multivariate dispersion (MVDISP) showed greater variance among assemblage structure following the discharge event. These results suggest that 2 months following the disturbance represent a time period of stochasticity in regard to assemblage structure dynamics, and this was followed by rapid recovery. We term this dynamic the “hangover effect” as it represents the time frame from the cessation of the perturbation to the assemblage's return to predisturbance conditions. The availability and proximity of tributaries and upstream refugia, which were not affected by the disturbance, as well as the rapid recovery of abiotic parameters likely played a substantial role in assemblage recovery. This study not only demonstrates rapid recovery in an aquatic system, but further demonstrates the value of continuous, long-term, data collections which enhance our understanding of assemblage dynamics. PMID:26120432

On judgement of electron transfer between two regions divided by the separatrix of confronting divergent magnetic fields applied to an inductively coupled plasma

NASA Astrophysics Data System (ADS)

Sugawara, Hirotake; Yamamoto, Tappei

2016-09-01

In order to quantitatively evaluate the electron confinement effect of the confronting divergent magnetic fields (CDMFs) applied to an inductively coupled plasma, we analyzed the electron transfer between two regions divided by the separatrix of the CDMFs in Ar at 0.67 Pa at 300 K using a Monte Carlo method. A conventional transfer judgement was simply based on the electron passage across the separatrix from the upstream source region to the downstream diffusion region. An issue was an overestimation of the transfer due to temporary stay of electrons in the downstream region. Electrons may pass the downstream region during their gyration even in case they are effectively bound to the upstream region, where their guiding magnetic flux lines run. More than half of the transfers were temporary ones and such seeming transfers were relevantly excluded from the statistics by introducing a newly chosen criterion based on the passage of electron gyrocenters across the separatrix and collisional events in the downstream region. Simulation results showed a tendency that the ratio of the temporary transfers excluded was higher under stronger magnetic fields because of higher cyclotron frequency. Work supported by JSPS Kakenhi Grant Number 16K05626.

Fuel injection assembly for use in turbine engines and method of assembling same

DOEpatents

Berry, Jonathan Dwight; Johnson, Thomas Edward; York, William David; Uhm, Jong Ho

2015-12-15

A fuel injection assembly for use in a turbine engine is provided. The fuel injection assembly includes an end cover, an endcap assembly, a fluid supply chamber, and a plurality of tube assemblies positioned at the endcap assembly. Each of the tube assemblies includes housing having a fuel plenum and a cooling fluid plenum. The cooling fluid plenum is positioned downstream from the fuel plenum and separated from the fuel plenum by an intermediate wall. The plurality of tube assemblies also include a plurality of tubes that extends through the housing. Each of the plurality of tubes is coupled in flow communication with the fluid supply chamber and a combustion chamber positioned downstream from the tube assembly. The plurality of tube assemblies further includes an aft plate at a downstream end of the cooling fluid plenum. The plate includes at least one aperture.

Response and recovery of streams to an intense regional flooding event

NASA Astrophysics Data System (ADS)

Dethier, E.; Magilligan, F. J.; Renshaw, C. E.; Kantack, K. M.

2015-12-01

Determining the relative roles of frequent and infrequent events on landscape form and material transport has implications for understanding landscape development, and informs planning and infrastructure decisions. Flooding due to Tropical Storm Irene in 2011 provides a unique opportunity to examine the effects of a rare, major disturbance across a broad area (14,000 km2). Intense flooding caused variable but widespread channel and riparian reconfiguration, including 995 channel-adjacent mass-wasting events, collectively referred to here as landslides, that mostly occurred in glacial deposits. Of these, about half involved reactivation of existing scars. Landslides were generally small, ranging from 60 - 26,000 m2 in planform, and covered less than 0.01 % of land in the region, yet sediment input from landslides alone (131 mm/kyr when integrated over the study area) exceeded inferred local background erosion rates by 60 times. If Irene inputs are included in a thirty-year erosion record, the estimated erosion rate, 7.2 mm/kyr, aligns closely with long-term regional rates of 5-10 mm/kyr. Landslides also input trees to streams, increasing large wood influence on those reaches. Combined wood and sediment inputs contributed to channel changes downstream of landslides. In four years since Irene, terrestrial lidar and suspended sediment sampling has documented continued large wood and sediment input. Erosion occurred on each of seventeen monitored landslides during snowmelt, but is otherwise limited except during intense precipitation and/or flood events. Repeat lidar models have recorded erosion of up to 5,000 m3 on a single slide in one year, including as much as 4000 m3 during a single event. Tree fall on scarps during erosion events creates sediment traps at the base of landslides, contributing to an observed return to equilibrium slopes. Despite trapping, substantial sediment continues to enter streams. Ninety-five suspended sediment samples from forty sites show that landslides remain important sediment sources. Across a range of flows, 2014 - 2015 sediment flux for a given discharge is an order of magnitude higher than pre-Irene flux. Though landslide slope relaxation suggests incipient recovery from Irene, persistent rapid erosion of large wood and sediment indicates that recovery is still on-going.

Toxicity assessment of sediments collected upstream and downstream from the White Dam in Clarke County, Georgia

USGS Publications Warehouse

Lasier, Peter J.

2018-06-06

The White Dam in Clarke County, Georgia, has been proposed for breaching. Efforts to determine potential risks to downstream biota included assessments of sediment collected in the vicinity of the dam. Sediments collected from sites upstream and downstream from the dam were evaluated for toxicity in 42-day exposures using the freshwater amphipod Hyalella azteca. Endpoints of the study were survival, growth, and reproduction of H. azteca. Results indicated no significant differences between the collected sediments and the water-only treatment used for comparison of the test endpoints. Therefore, based on the laboratory experiments in this study, sediment migration downstream from a breach of the Dam may not pose a toxicity risk to downstream biota.

Migratory delay leads to reduced passage success of Atlantic salmon smolts at a hydroelectric dam

USGS Publications Warehouse

Nyqvist, Daniel; Greenberg, L.; Goerig, E.; Calles, O.; Bergman, E.; Ardren, William R.; Castro-Santos, Theodore R.

2017-01-01

Passage of fish through hydropower dams is associated with mortality, delay, increased energy expenditure and migratory failure for migrating fish and the need for remedial measures for both upstream and downstream migration is widely recognised. A functional fish passage must ensure safe and timely passage routes that a substantial portion of migrating fish will use. Passage solutions must address not only the number or percentage of fish that successfully pass a barrier, but also the time it takes to pass. Here, we used radiotelemetry to study the functionality of a fish bypass for downstream-migrating wild-caught and hatchery-released Atlantic salmon smolts. We used time-to-event analysis to model the influence of fish characteristics and environmental variables on the rates of a series of events associated with dam passage. Among the modelled events were approach rate to the bypass entry zone, retention rates in both the forebay and the entry zone and passage rates. Despite repeated attempts, only 65% of the tagged fish present in the forebay passed the dam. Fish passed via the bypass (33%), via spill (18%) and via turbines (15%). Discharge was positively related to approach, passage and retention rates. We did not detect any differences between wild and hatchery fish. Even though individual fish visited the forebay and the entry zone on multiple occasions, most fish passed during the first exposures to these zones. This study underscores the importance of timeliness to passage success and the usefulness of time-to-event analysis for understanding factors governing passage performance.

Molecular and Behavioral Changes Associated with Adult Hippocampus-Specific SynGAP1 Knockout

ERIC Educational Resources Information Center

Muhia, Mary; Willadt, Silvia; Yee, Benjamin K.; Feldon, Joram; Paterna, Jean-Charles; Schwendener, Severin; Vogt, Kaspar; Kennedy, Mary B.; Knuesel, Irene

2012-01-01

The synaptic Ras/Rap-GTPase-activating protein (SynGAP1) plays a unique role in regulating specific downstream intracellular events in response to N-methyl-D-aspartate receptor (NMDAR) activation. Constitutive heterozygous loss of SynGAP1 disrupts NMDAR-mediated physiological and behavioral processes, but the disruptions might be of developmental…

Quaternary geology and geomorphology of the lower Deschutes River Canyon, Oregon.

Treesearch

Jim E. O' Connor; Janet H. Curran; Robin A. Beebee; Gordon E. Grant; Andrei Sarna-Wojcicki

2003-01-01

The morphology of the Deschutes River canyon downstream of the Pelton-Round Butte dam complex is the product of the regional geologic history, the composition of the geologic units that compose the valley walls, and Quaternary processes and events. Geologic units within the valley walls and regional deformation patterns control overall valley morphology. Valley bottom...

Considerations on the influence of extreme events on the phosphorus transport from river catchments to the sea.

PubMed

Zessner, M; Postolache, C; Clement, A; Kovacs, A; Strauss, P

2005-01-01

In this paper, results from rivers of different sizes in Romania, Hungary and Austria are presented. The paper shows the dynamics of extreme events and their contribution to the total P and suspended solids transported in these rivers. Special attention is paid to the influence of the size of the catchment and the event probability on the relative contribution of a single event to the total loads transported in the river. Further, the development of phosphorus loads along the Danube River at a flood event is shown. From the results it can be concluded that there is no immediate influence of high flow and flood events in upstream parts of the Basin on the transport of phosphorus from the catchment to the receiving Sea. Particle-bound phosphorus is mobilised from the catchment (through erosion) and the river bottom to a high extent at high flow events and transported at peak discharges to downstream, where retention by sedimentation of particles takes place. On the one hand this retention is a transport to flooded areas. In this case it can be considered as more or less long term retention. On the other hand sedimentation takes place in the riverbed, in case the tractive effort of the river is reduced. In this second case the P-pool in the sediments of the sedimentation area will be increased. If anaerobic conditions in the sediment appear, part of the phosphorus will be transformed to soluble ortho-phosphate and will continuously contribute to the phosphorus transport to the receiving sea. Part of the P-retained in the river sediment will be mobilised by resuspension at the next biggest high flow event. Altogether, these alternating processes of suspension, transport, export to flooded areas or sedimentation in the river bed with partly solution and partly resuspension at the next event decrease the share of the phosphorus transport during high flow events on the total loads transported in the more downstream parts of a catchments as compared to the more upstream parts. In the year of occurrence of an extreme flood event the P-transport of this year is dominated by the flood event. As an average over many years the contribution of high flow events to the total P-transport still may be between 7 and 20% in smaller catchments (around 1,000 km2). In a big catchment (e.g. river Danube) much smaller contributions of flood events on the total P-transport can be expected as an average over many years.

Direct binding of arsenic trioxide to AMPK and generation of inhibitory effects on acute myeloid leukemia precursors

PubMed Central

Beauchamp, Elspeth M.; Kosciuczuk, Ewa M.; Serrano, Ruth; Nanavati, Dhaval; Swindell, Elden P.; Viollet, Benoit; O'Halloran, Thomas V.; Altman, Jessica K.; Platanias, Leonidas C.

2014-01-01

Arsenic trioxide (As2O3) exhibits potent antineoplastic effects and is used extensively in clinical oncology for the treatment of a subset of patients with acute myeloid leukemia (AML). Although As2O3 is known to regulate activation of several signaling cascades, the key events, accounting for its anti-leukemic properties, remain to be defined. We provide evidence that arsenic can directly bind to cysteine 299 in AMPKα and inhibit its activity. This inhibition of AMPK by arsenic is required in part for its cytotoxic effects on primitive leukemic progenitors from patients with AML, while concomitant treatment with an AMPK activator antagonizes in vivo the arsenic-induced antileukemic effects in a xenograft AML mouse model. A consequence of AMPK inhibition is activation of the mTOR pathway as a negative regulatory feedback loop. However, when AMPK expression is lost, arsenic-dependent activation of the kinase RSK downstream of MAPK activity compensates the generation of regulatory feedback signals through phosphorylation of downstream mTOR targets. Thus, therapeutic regimens with arsenic trioxide will need to include inhibitors of both the mTOR and RSK pathways in combination to prevent engagement of negative feedback loops and maximize antineoplastic responses. PMID:25344585

Measuring the distance between multiple sequence alignments.

PubMed

Blackburne, Benjamin P; Whelan, Simon

2012-02-15

Multiple sequence alignment (MSA) is a core method in bioinformatics. The accuracy of such alignments may influence the success of downstream analyses such as phylogenetic inference, protein structure prediction, and functional prediction. The importance of MSA has lead to the proliferation of MSA methods, with different objective functions and heuristics to search for the optimal MSA. Different methods of inferring MSAs produce different results in all but the most trivial cases. By measuring the differences between inferred alignments, we may be able to develop an understanding of how these differences (i) relate to the objective functions and heuristics used in MSA methods, and (ii) affect downstream analyses. We introduce four metrics to compare MSAs, which include the position in a sequence where a gap occurs or the location on a phylogenetic tree where an insertion or deletion (indel) event occurs. We use both real and synthetic data to explore the information given by these metrics and demonstrate how the different metrics in combination can yield more information about MSA methods and the differences between them. MetAl is a free software implementation of these metrics in Haskell. Source and binaries for Windows, Linux and Mac OS X are available from http://kumiho.smith.man.ac.uk/whelan/software/metal/.

Evaluation of flood inundation in Crystal Springs Creek, Portland, Oregon

USGS Publications Warehouse

Stonewall, Adam; Hess, Glen

2016-05-25

Efforts to improve fish passage have resulted in the replacement of six culverts in Crystal Springs Creek in Portland, Oregon. Two more culverts are scheduled to be replaced at Glenwood Street and Bybee Boulevard (Glenwood/Bybee project) in 2016. Recently acquired data have allowed for a more comprehensive understanding of the hydrology of the creek and the topography of the watershed. To evaluate the impact of the culvert replacements and recent hydrologic data, a Hydrologic Engineering Center-River Analysis System hydraulic model was developed to estimate water-surface elevations during high-flow events. Longitudinal surface-water profiles were modeled to evaluate current conditions and future conditions using the design plans for the culverts to be installed in 2016. Additional profiles were created to compare with the results from the most recent flood model approved by the Federal Emergency Management Agency for Crystal Springs Creek and to evaluate model sensitivity.Model simulation results show that water-surface elevations during high-flow events will be lower than estimates from previous models, primarily due to lower estimates of streamflow associated with the 0.01 and 0.002 annual exceedance probability (AEP) events. Additionally, recent culvert replacements have resulted in less ponding behind crossings. Similarly, model simulation results show that the proposed replacement culverts at Glenwood Street and Bybee Boulevard will result in lower water-surface elevations during high-flow events upstream of the proposed project. Wider culverts will allow more water to pass through crossings, resulting in slightly higher water-surface elevations downstream of the project during high-flows than water-surface elevations that would occur under current conditions. For the 0.01 AEP event, the water-surface elevations downstream of the Glenwood/Bybee project will be an average of 0.05 ft and a maximum of 0.07 ft higher than current conditions. Similarly, for the 0.002 AEP event, the water-surface elevations will be an average of 0.04 ft and a maximum of 0.19 ft higher than current conditions.

The historical and palaeoflood record of Katherine river, northern Australia: evaluating the likelihood of extreme discharge events in the context of the 1998 flood

NASA Astrophysics Data System (ADS)

Sandercock, Peter; Wyrwoll, Karl-Heinz

2005-12-01

The discharge regimes of the large rivers of northern Australia are characterized by the occurrence of extreme flood events with far-reaching environmental and societal impacts. In January 1998 the largest flood ever recorded on the Katherine River, northern Australia, resulted in widespread inundation and resultant damage to the town of Katherine. The occurrence of the flood emphasized the unreliability of the then available flood probability estimates and prompted a palaeoflood approach to estimate the recurrence interval of the event. The location of Katherine is ideal for such a study, as the town is located immediately downstream from Katherine Gorge, which provides the necessary bedrock-confined channel required for such an approach. In addition, previous work in Katherine Gorge had demonstrated that the gorge sections hold suitable deposits for palaeoflood stage reconstruction. The results of the present study show that at least two flow events with discharges similar to the 1998 flood have occurred within the last 600 years, and that high-magnitude floods are a general feature of the discharge record of the Katherine River over the last c. 2000 years. Furthermore, because the study was undertaken within a few months of the occurrence of the 1998 flood, it provided the opportunity to evaluate the previously obtained flood discharge estimates and draw attention to the general uncertainties associated with palaeoflood studies. Our results emphasize that palaeoflood stage estimates based on slackwater deposits need to be treated as conservative estimates only. More specifically, with respect to the 1998 event, our study demonstrates that the controls of flood peak were more complex than simply flood routing through the gorge sections. It is clear that the areas downstream from Katherine Gorge made an important contribution to the flood peak of the 1998 event. Copyright

Influence of Wastewater Discharge on the Metabolic Potential of the Microbial Community in River Sediments.

PubMed

Li, Dong; Sharp, Jonathan O; Drewes, Jörg E

2016-01-01

To reveal the variation of microbial community functions during water filtration process in river sediments, which has been utilized widely in natural water treatment systems, this study investigates the influence of municipal wastewater discharge to streams on the phylotype and metabolic potential of the microbiome in upstream and particularly various depths of downstream river sediments. Cluster analyses based on both microbial phylogenetic and functional data collectively revealed that shallow upstream sediments grouped with those from deeper subsurface downstream regions. These sediment samples were distinct from those found in shallow downstream sediments. Functional genes associated with carbohydrate, xenobiotic, and certain amino acid metabolisms were overrepresented in upstream and deep downstream samples. In contrast, the more immediate contact with wastewater discharge in shallow downstream samples resulted in an increase in the relative abundance of genes associated with nitrogen, sulfur, purine and pyrimidine metabolisms, as well as restriction-modification systems. More diverse bacterial phyla were associated with upstream and deep downstream sediments, mainly including Actinobacteria, Planctomycetes, and Firmicutes. In contrast, in shallow downstream sediments, genera affiliated with Betaproteobacteria and Gammaproteobacteria were enriched with putative functions that included ammonia and sulfur oxidation, polyphosphate accumulation, and methylotrophic bacteria. Collectively, these results highlight the enhanced capabilities of microbial communities residing in deeper stream sediments for the transformation of water contaminants and thus provide a foundation for better design of natural water treatment systems to further improve the removal of contaminants.

PECAM1 regulates flow-mediated Gab1 tyrosine phosphorylation and signaling

PubMed Central

Xu, Suowen; Ha, Chang Hoon; Wang, Weiye; Xu, Xiangbin; Yin, Meimei; Jin, Felix Q.; Mastrangelo, Michael; Koroleva, Marina; Fujiwara, Keigi; Jin, Zheng Gen

2016-01-01

Endothelial dysfunction, characterized by impaired activation of endothelial nitric oxide (NO) synthase (eNOS) and ensued decrease of NO production, is a common mechanism of various cardiovascular pathologies, including hypertension and atherosclerosis. Laminar blood flow-mediated specific signaling cascades modulate vascular endothelial cells (ECs) structure and functions. We have previously shown that flow-stimulated Gab1 (Grb2-associated binder-1) tyrosine phosphorylation mediates eNOS activation in ECs, which in part confers laminar flow atheroprotective action. However, the molecular mechanisms whereby flow regulates Gab1 tyrosine phosphorylation and its downstream signaling events remain unclear. Here we show that platelet endothelial cell adhesion molecule-1 (PECAM1), a key molecule in an endothelial mechanosensing complex, specifically mediates Gab1 tyrosine phosphorylation and its downstream Akt and eNOS activation in ECs upon flow rather than hepatocyte growth factor (HGF) stimulation. Small interfering RNA (siRNA) targeting PECAM1 abolished flow- but not HGF-induced Gab1 tyrosine phosphorylation and Akt, eNOS activation as well as Gab1 membrane translocation. Protein-tyrosine phosphatase SHP2, which has been shown to interact with Gab1, was involved in flow signaling and HGF signaling, as SHP2 siRNA diminished the flow- and HGF-induced Gab1 tyrosine phosphorylation, membrane localization and downstream signaling. Pharmacological inhibition of PI3K decreased flow-, but not HGF-mediated Gab1 phosphorylation and membrane localization as well as eNOS activation. Finally, we observed that flow-mediated Gab1 and eNOS phosphorylation in vivo induced by voluntary wheel running was reduced in PECAM1 knockout mice. These results demonstrate a specific role of PECAM1 in flow-mediated Gab1 tyrosine phosphorylation and eNOS signaling in ECs. PMID:26706435

Accounting for Long Term Sediment Storage in a Watershed Scale Numerical Model for Suspended Sediment Routing

NASA Astrophysics Data System (ADS)

Keeler, J. J.; Pizzuto, J. E.; Skalak, K.; Karwan, D. L.; Benthem, A.; Ackerman, T. R.

2015-12-01

Quantifying the delivery of suspended sediment from upland sources to downstream receiving waters is important for watershed management, but current routing models fail to accurately represent lag times in delivery resulting from sediment storage. In this study, we route suspended sediment tagged by a characteristic tracer using a 1-dimensional model that implicitly includes storage and remobilization processes and timescales. From an input location where tagged sediment is added, the model advects suspended sediment downstream at the velocity of the stream (adjusted for the intermittency of transport events). Deposition rates are specified by the fraction of the suspended load stored per kilometer of downstream transport (presumably available from a sediment budget). Tagged sediment leaving storage is evaluated from a convolution equation based on the probability distribution function (pdf) of sediment storage waiting times; this approach avoids the difficulty of accurately representing complex processes of sediment remobilization from floodplain and other deposits. To illustrate the role of storage on sediment delivery, we compare exponential and bounded power-law waiting time pdfs with identical means of 94 years. In both cases, the median travel time for sediment to reach the depocenter in fluvial systems less than 40km long is governed by in-channel transport and is unaffected by sediment storage. As the channel length increases, however, the median sediment travel time reflects storage rather than in-channel transport; travel times do not vary significantly between the two different waiting time functions. At distances of 50, 100, and 200 km, the median travel time for suspended sediment is 36, 136, and 325 years, orders of magnitude slower than travel times associated with in-channel transport. These computations demonstrate that storage can be neglected for short rivers, but for longer systems, storage controls the delivery of suspended sediment.

Downstream effects of ROCK signaling in cultured human corneal stromal cells: microarray analysis of gene expression.

PubMed

Harvey, Stephen A K; Anderson, Susan C; SundarRaj, Nirmala

2004-07-01

Rho-associated coiled-coil-containing protein kinase (ROCK) is a downstream target of Rho GTPase signaling and regulates the assembly of stress fibers. Previous reports indicate that Rho/ROCK signaling is involved in the regulation of several cellular processes, some of which may be cell-type specific and are probably critical to corneal stromal cell activation. The present study identified ROCK-regulated gene expression in corneal stromal cells. Corneal stromal cells derived from eyes of three different donors were cultured to yield the following designated phenotypes: baseline fibroblasts (DMEM with 10% serum), activated fibroblasts (10% serum+bFGF+heparin), and myofibroblasts (1% serum+TGF-beta 1). Cells were exposed to the ROCK inhibitor Y-27632 or vehicle for 12 hours, and transcript levels altered by ROCK inhibition were identified with oligonucleotide microarrays (GeneChips; Affymetrix, Santa Clara, CA). In these phenotypes, Y-27632 caused marked (twofold or more) increases or decreases in 14/4, 12/3, and 15/10 transcripts. In both fibroblast groups Y-27632-treatment increased expression of endothelin receptors and of parathyroid hormone-like hormone. The upregulation of alpha-smooth muscle actin in myofibroblasts was attenuated by Y-27632. Combining data from all groups identified ROCK-supported (Y-27632 inhibitable) expression of 10 transcripts, including ribonucleotide reductase M2, the cyclin B1-CDC2-CKS2 system, and four mitotic spindle-associated proteins. ROCK inhibition causes broad inhibition of DNA synthesis and mitosis and causes changes that are different between (bFGF-activated) fibroblasts and (TGF-beta 1-induced) myofibroblasts. Thus, Rho/ROCK signaling regulates both common and distinct downstream events in corneal stromal cells activated (differentiated) to fibroblast or myofibroblast phenotype.

Get In and Get Out: Assessing Stream Sediment Loading from Short Duration Forest Harvest Operations and Rapid Haul Road Decommissioning.

NASA Astrophysics Data System (ADS)

Corrigan, A.; Silins, U.; Stone, M.

2016-12-01

Best management practices (BMPs) and associated erosion control measures for mitigating sediment impacts from forestry roads and road-stream crossings are well documented. While rapid road decommissioning after forestry operations may serve to limit broader impacts on sediment production in high value headwater streams, few studies have evaluated the combined effects of accelerated harvest operations and rapid retirement of logging roads and road-stream crossings on stream sediment. The objectives of this study were to evaluate the initial impacts of these strategies on fine sediment loading and fate during a short duration harvesting operation in 3 headwater sub-catchments in the southwestern Rocky Mountains of Alberta, Canada. A multi-pronged sampling approach (ISCOs, event focused grab sampling, continuous wash load sampling, and stream bed sediment intrusion measurements) was used to measure sediment loading and deposition in streambeds upstream and downstream of road-stream bridge crossings during harvest operations (2015) and after road and bridge crossing retirement (2016). Sediment production from forestry roads was generally much lower than has been reported from other studies in similar settings. Average total suspended solids (TSS) downstream of the bridge crossings were actually lower (-3.28 g/L; -0.704 g/L) than upstream of two bridge crossings while in-stream sediment sources contributed to elevated sediment downstream of a third road-stream crossing. Minimal in stream sediment impacts from forest harvest and road-stream crossings was likely a reflection of combined factors including a) employment of erosion control BMPs to roads and bridge crossings, b) rapid decommissioning of roads and crossings to limit exposure of linear land disturbance features, and c) drier El Niño climatic conditions during the study.

Elevated streamflows increase dam passage by juvenile coho salmon during winter: Implications of climate change in the Pacific Northwest

USGS Publications Warehouse

Kock, Tobias J.; Liedtke, Theresa L.; Rondorf, Dennis W.; Serl, John D.; Kohn, Mike; Bumbaco, Karin A.

2012-01-01

A 4-year evaluation was conducted to determine the proportion of juvenile coho salmon Oncorhynchus kisutch passing Cowlitz Falls Dam, on the Cowlitz River, Washington, during winter. River and reservoir populations of coho salmon parr were monitored using radiotelemetry to determine if streamflow increases resulted in increased downstream movement and dam passage. This was of interest because fish that pass downstream of Cowlitz Falls Dam become landlocked in Riffe Lake and are lost to the anadromous population. Higher proportions of reservoir-released fish (0.391-0.480) passed Cowlitz Falls Dam than did river-released fish (0.037-0.119). Event-time analyses demonstrated that streamflow increases were important predictors of dam passage rates during the study. The estimated effect of increasing streamflows on the risk of dam passage varied annually and ranged from 9% to 75% for every 28.3 m3/s increase in streamflow. These results have current management implications because they demonstrate the significance of dam passage by juvenile coho salmon during winter months when juvenile fish collection facilities are typically not operating. The results also have future management implications because climate change predictions suggest that peak streamflow timing for many watersheds in the Pacific Northwest will shift from late spring and early summer to winter. Increased occurrence of intense winter flood events is also expected. Our results demonstrate that juvenile coho salmon respond readily to streamflow increases and initiate downstream movements during winter months, which could result in increased passage at dams during these periods if climate change predictions are realized in the coming decades.

System and method for reducing combustion dynamics in a combustor

DOEpatents

Uhm, Jong Ho; Johnson, Thomas Edward; Zuo, Baifang; York, William David

2013-08-20

A system for reducing combustion dynamics in a combustor includes an end cap having an upstream surface axially separated from a downstream surface, and tube bundles extend through the end cap. A diluent supply in fluid communication with the end cap provides diluent flow to the end cap. Diluent distributors circumferentially arranged inside at least one tube bundle extend downstream from the downstream surface and provide fluid communication for the diluent flow through the end cap. A method for reducing combustion dynamics in a combustor includes flowing fuel through tube bundles that extend axially through an end cap, flowing a diluent through diluent distributors into a combustion chamber, wherein the diluent distributors are circumferentially arranged inside at least one tube bundle and each diluent distributor extends downstream from the end cap, and forming a diluent barrier in the combustion chamber between at least one pair of adjacent tube bundles.

Proceedings of a workshop on American Eel passage technologies

USGS Publications Warehouse

Haro, Alexander J.

2013-01-01

Recent concerns regarding a decline in recruitment of American eels (Anguilla rostrata) have prompted efforts to restore this species to historic habitats by providing passage for both upstream migrant juveniles and downstream migrant adults at riverine barriers, including low-head and hydroelectric dams (Castonguay et al. 1994, Haro et al. 2000). These efforts include development of management plans and stock assessment reviews in both the US and Canada (COSEWIC 2006, Canadian Eel Working Group 2009, DFO 2010, MacGregor et al. 2010, ASMFC 2000, ASMFC 2006, ASMFC 2008, Williams and Threader 2007), which target improvement of upstream and downstream passage for eels, as well as identification and prioritization of research needs for development of new and more effective passage technologies for American eels. Traditional upstream fish passage structures, such as fishways and fish lifts, are often ineffective passing juvenile eels, and specialized passage structures for this species are needed. Although designs for such passage structures are available and diverse (Knights and White 1998, Porcher 2002, FAO/DVWK 2002, Solomon and Beach 2004a,b, Environment Agency UK 2011), many biologists, managers, and engineers are unfamiliar with eel pass design and operation, or unaware of the technical options available for upstream eel passage, Better coordination is needed to account for eel passage requirements during restoration efforts for other diadromous fish species. Also, appropriately siting eel passes at hydropower projects is critical, and siting can be difficult and complex due to physical restrictions in access to points of natural concentrations of eels, dynamic hydraulics of tailrace areas, and presence of significant competing flows from turbine outfalls or spill. As a result, some constructed eel passes are sited poorly and may pass only a fraction of the number of eels attempting to pass the barrier. When sited and constructed appropriately, however, eel passes can effectively pass thousands of individuals in a season (Appendix D). technologies for preventing impingement and entrainment mortality and injury of downstream migrant eels at hydropower projects are not well developed. Traditional downstream fish passage mitigative techniques originally developed for salmonids and other species are frequently ineffective passing eels (Richkus and Dixon 2003, EPRI 2001, Bruijs and Durif 2009). Large hydropower projects, with high project flows or intake openings that cannot be fitted with racks or screens with openings small enough to exclude eels, pose significant passage problems for this species, and turbine impingement and entrainment mortality of eels can be as high as 100%. Spill mortality and injury may also be significant for eels, given their tendency to move during high flow events when projects typically spill large amounts of flow. Delays in migration of eels that have difficulty locating and utilizing bypass entrances can also be significant. Therefore, downstream passage technologies are at a much more nebulous state of development than upstream passage technologies, and require further evaluation and improvement before rigorous design guidelines can be established. There have been few studies conducted to evaluate effectiveness of current mitigative measures for both upstream and downstream passage of eels. Research is needed to determine eel migratory timing, behavior, and appropriate mitigation technologies for specific sites and eel life history stages. Both upstream and downstream eel passage structures can be difficult to evaluate in terms of performance, and examples of how evaluation and monitoring can be accomplished were reviewed at the workshop.

Supply Chain Modeling for Fluorspar and Hydroflouric Acid and Implications for Further Analyses

DTIC Science & Technology

2015-04-01

Critical Materials, Volume 1 Chapter 2. Fluorspar-HF Supply Chain 4 Foreign Supply Other usesUS Supply Fluorspar Mining HF Production Downstream...analysis are listed across the top: Fluorspar Mining , HF Production, and (pro- duction of) Downstream Products (using HF). • U.S. supply is represented by...material flows from fluorspar mining , to HF production, to downstream fluorine-containing products. – Black lines are material flows included in the supply

Preliminary assessment of chloride concentrations, loads, and yields in selected watersheds along the Interstate 95 corridor, southeastern Connecticut, 2008-09

USGS Publications Warehouse

Brown, Craig J.; Mullaney, John R.; Morrison, Jonathan; Mondazzi, Remo

2011-01-01

Water-quality conditions were assessed to evaluate potential effects of road-deicer applications on stream-water quality in four watersheds along Interstate 95 (I-95) in southeastern Connecticut from November 1, 2008, through September 30, 2009. This preliminary study is part of a four-year cooperative study by the U.S. Geological Survey (USGS), the Federal Highway Administration (FHWA), and the Connecticut Department of Transportation (ConnDOT). Streamflow and water quality were studied at four watersheds?Four Mile River, Oil Mill Brook, Stony Brook, and Jordan Brook. Water-quality samples were collected and specific conductance was measured continuously at paired water-quality monitoring sites upstream and downstream from I-95. Specific conductance values were related to chloride (Cl) concentrations to assist in determining the effects of road-deicing operations on the levels of Cl in the streams. Streamflow and water-quality data were compared with weather data and with the timing, amount, and composition of deicers applied to state highways. Grab samples were collected during winter stormwater-runoff events, such as winter storms or periods of rain or warm temperatures in which melting takes place, and periodically during the spring and summer. Cl concentrations at the eight water-quality monitoring sites were well below the U.S. Environmental Protection Agency (USEPA) recommended chronic and acute Cl toxicity criteria of 230 and 860 milligrams per liter (mg/L), respectively. Specific conductance and estimated Cl concentrations in streams, particularly at sites downstream from I-95, peaked during discharge events in the winter and early spring as a result of deicers applied to roads and washed off by stormwater or meltwater. During winter storms, deicing activities, or subsequent periods of melting, specific conductance and estimated Cl concentrations peaked as high as 703 microsiemens per centimeter (?S/cm) and 160 mg/L at the downstream sites. During most of the spring and summer, specific conductance and estimated Cl concentrations decreased during discharge events because the low-ionic strength of stormwater had a diluting effect on stream-water quality. However, peaks in specific conductance and estimated Cl concentrations at Jordan Brook and Stony Brook corresponded to peaks in streamflow well after winter snow or ice events; these delayed peaks in Cl concentration likely resulted from deicing salts that remained in melting snow piles and (or) that were flushed from soils and shallow groundwater, then discharged downstream. Cl loads in streams generally were highest in the winter and early spring. The estimated load for the period of record at the four monitoring sites downstream from I-95 ranged from 0.33 ton per day (ton/d) at the Stony Brook watershed to 0.59 ton/d at the Jordan Brook watershed. The Cl yields ranged from 0.07 ton per day per square mile (ton/d/)mi2) at Oil Mill Brook, one of the least developed watersheds, to 0.21 (ton/d)/mi2) at Jordan Brook, the watershed with the highest percentage of urban development and impervious surfaces. The median estimates of Cl load from atmospheric deposition ranged from 11 to 19 tons, and contributed 4.3 to 7.1 percent of the Cl load in streamflow from the watershed areas. A comparison of the Cl load input and output estimates indicates that less Cl is leaving the watersheds than is entering through atmospheric deposition and application of deicers. The lag time between introduction of Cl to the watershed and transport to the stream, and uncertainty in the load estimates may be the reasons for this discrepancy. In addition, estimates of direct infiltration of Cl to groundwater from atmospheric deposition, deicer applications, and septic-tank drainfields to groundwater were outside the scope of the November 2008 to September 2009 assessment. However, increased concentrations of ions were observed between upstream and downstream sites and could result from deicer appli

Extreme events in a vortex gas simulation of a turbulent half-jet

NASA Astrophysics Data System (ADS)

Suryanarayanan, Saikishan; Pathikonda, Gokul; Narasimha, Roddam

2012-11-01

Extensive simulations [arXiv:1008.2876v1 [physics.flu-dyn], BAPS.2010.DFD.LE.4] have shown that the temporally evolving vortex gas mixing layer has 3 regimes, including one which has a universal spreading rate. The present study explores the development of spatially evolving mixing layers, using a vortex gas model based on Basu et al. (1995 Appl. Math. Modelling). The effects of the velocity ratio (r) are analyzed via the most extensive simulations of this kind till date, involving up to 10000 vortices and averaging over up to 1000 convective times. While the temporal limit is approached as r approaches unity, striking features such as extreme events involving coherent structures, bending, deviation of the convection velocity from mean velocity, spatial feedback and greater sensitivity to downstream and free stream boundary conditions are observed in the half-jet (r = 0) limit. A detailed statistical analysis reveals possible causes for the large scatter across experiments, as opposed to the commonly adopted explanation of asymptotic dependence on initial conditions. Supported in part by contract no. Intel/RN/4288.

Measuring, Predicting and Visualizing Short-Term Change in Word Representation and Usage in VKontakte Social Network

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stewart, Ian B.; Arendt, Dustin L.; Bell, Eric B.

Language in social media is extremely dynamic: new words emerge, trend and disappear, while the meaning of existing words can fluctuate over time. This work addresses several important tasks of visualizing and predicting short term text representation shift, i.e. the change in a word’s contextual semantics. We study the relationship between short-term concept drift and representation shift on a large social media corpus – VKontakte collected during the Russia-Ukraine crisis in 2014 – 2015. We visualize short-term representation shift for example keywords and build predictive models to forecast short-term shifts in meaning from previous meaning as well as from conceptmore » drift. We show that short-term representation shift can be accurately predicted up to several weeks in advance and that visualization provides insight into meaning change. Our approach can be used to explore and characterize specific aspects of the streaming corpus during crisis events and potentially improve other downstream classification tasks including real-time event forecasting in social media.« less

Mitohormesis: Promoting Health and Lifespan by Increased Levels of Reactive Oxygen Species (ROS)

PubMed Central

Ristow, Michael; Schmeisser, Kathrin

2014-01-01

Increasing evidence indicates that reactive oxygen species (ROS), consisting of superoxide, hydrogen peroxide, and multiple others, do not only cause oxidative stress, but rather may function as signaling molecules that promote health by preventing or delaying a number of chronic diseases, and ultimately extend lifespan. While high levels of ROS are generally accepted to cause cellular damage and to promote aging, low levels of these may rather improve systemic defense mechanisms by inducing an adaptive response. This concept has been named mitochondrial hormesis or mitohormesis. We here evaluate and summarize more than 500 publications from current literature regarding such ROS-mediated low-dose signaling events, including calorie restriction, hypoxia, temperature stress, and physical activity, as well as signaling events downstream of insulin/IGF-1 receptors, AMP-dependent kinase (AMPK), target-of-rapamycin (TOR), and lastly sirtuins to culminate in control of proteostasis, unfolded protein response (UPR), stem cell maintenance and stress resistance. Additionally, consequences of interfering with such ROS signals by pharmacological or natural compounds are being discussed, concluding that particularly antioxidants are useless or even harmful. PMID:24910588

A framework for estimating the determinants of spatial and temporal variation in vital rates and inferring the occurrence of unobserved extreme events

PubMed Central

Jesenšek, Dušan; Crivelli, Alain J.

2018-01-01

We develop a general framework that combines long-term tag–recapture data and powerful statistical and modelling techniques to investigate how population, environmental and climate factors determine variation in vital rates and population dynamics in an animal species, using as a case study the population of brown trout living in Upper Volaja (Western Slovenia). This population has been monitored since 2004. Upper Volaja is a sink, receiving individuals from a source population living above a waterfall. We estimate the numerical contribution of the source population on the sink population and test the effects of temperature, population density and extreme events on variation in vital rates among 2647 individually tagged brown trout. We found that individuals dispersing downstream from the source population help maintain high population densities in the sink population despite poor recruitment. The best model of survival for individuals older than juveniles includes additive effects of birth cohort and sampling occasion. Fast growth of older cohorts and higher population densities in 2004–2005 suggest very low population densities in the late 1990s, which we hypothesize were caused by a flash flood that strongly reduced population size and created the habitat conditions for faster individual growth and transient higher population densities after the extreme event. PMID:29657746

A synoptic climatology of derecho producing mesoscale convective systems in the North-Central Plains

NASA Astrophysics Data System (ADS)

Bentley, Mace L.; Mote, Thomas L.; Byrd, Stephen F.

2000-09-01

Synoptic-scale environments favourable for producing derechos, or widespread convectively induced windstorms, in the North-Central Plains are examined with the goal of providing pattern-recognition/diagnosis techniques. Fifteen derechos were identified across the North-Central Plains region during 1986-1995. The synoptic environment at the initiation, mid-point and decay of each derecho was then evaluated using surface, upper-air and National Center for Atmospheric Research (NCAR)/National Center for Environmental Prediction (NCEP) reanalysis datasets.Results suggest that the synoptic environment is critical in maintaining derecho producing mesoscale convective systems (DMCSs). The synoptic environment in place downstream of the MCS initiation region determines the movement and potential strength of the system. Circulation around surface low pressure increased the instability gradient and maximized leading edge convergence in the initiation region of nearly all events regardless of DMCS location or movement. Other commonalities in the environments of these events include the presence of a weak thermal boundary, high convective instability and a layer of dry low-to-mid-tropospheric air. Of the two corridors sampled, northeastward moving derechos tend to initiate east of synoptic-scale troughs, while southeastward moving derechos form on the northeast periphery of a synoptic-scale ridge. Other differences between these two DMCS events are also discussed.

Simulations of flow and prediction of sediment movement in Wymans Run, Cochranton Borough, Crawford County, Pennsylvania

USGS Publications Warehouse

Hittle, Elizabeth

2011-01-01

In small watersheds, runoff entering local waterways from large storms can cause rapid and profound changes in the streambed that can contribute to flooding. Wymans Run, a small stream in Cochranton Borough, Crawford County, experienced a large rain event in June 2008 that caused sediment to be deposited at a bridge. A hydrodynamic model, Flow and Sediment Transport and Morphological Evolution of Channels (FaSTMECH), which is incorporated into the U.S. Geological Survey Multi-Dimensional Surface-Water Modeling System (MD_SWMS) was constructed to predict boundary shear stress and velocity in Wymans Run using data from the June 2008 event. Shear stress and velocity values can be used to indicate areas of a stream where sediment, transported downstream, can be deposited on the streambed. Because of the short duration of the June 2008 rain event, streamflow was not directly measured but was estimated using U.S. Army Corps of Engineers one-dimensional Hydrologic Engineering Centers River Analysis System (HEC-RAS). Scenarios to examine possible engineering solutions to decrease the amount of sediment at the bridge, including bridge expansion, channel expansion, and dredging upstream from the bridge, were simulated using the FaSTMECH model. Each scenario was evaluated for potential effects on water-surface elevation, boundary shear stress, and velocity.

A framework for estimating the determinants of spatial and temporal variation in vital rates and inferring the occurrence of unobserved extreme events.

PubMed

Vincenzi, Simone; Jesenšek, Dušan; Crivelli, Alain J

2018-03-01

We develop a general framework that combines long-term tag-recapture data and powerful statistical and modelling techniques to investigate how population, environmental and climate factors determine variation in vital rates and population dynamics in an animal species, using as a case study the population of brown trout living in Upper Volaja (Western Slovenia). This population has been monitored since 2004. Upper Volaja is a sink, receiving individuals from a source population living above a waterfall. We estimate the numerical contribution of the source population on the sink population and test the effects of temperature, population density and extreme events on variation in vital rates among 2647 individually tagged brown trout. We found that individuals dispersing downstream from the source population help maintain high population densities in the sink population despite poor recruitment. The best model of survival for individuals older than juveniles includes additive effects of birth cohort and sampling occasion. Fast growth of older cohorts and higher population densities in 2004-2005 suggest very low population densities in the late 1990s, which we hypothesize were caused by a flash flood that strongly reduced population size and created the habitat conditions for faster individual growth and transient higher population densities after the extreme event.

Analysis of signal transduction in cell-free extracts and rafts of Xenopus eggs.

PubMed

Tokmakov, Alexander A; Iwasaki, Tetsushi; Sato, Ken-Ichi; Fukami, Yasuo

2010-05-01

Intracellular signaling during egg activation/fertilization has been extensively studied using intact eggs, which can be manipulated by microinjection of different mRNAs, proteins, or chemical drugs. Furthermore, egg extracts, which retain high CSF activity (CSF-arrested extracts), were developed for studying fertilization/activation signal transduction, which have significant advantages as a model system. The addition of calcium to CSF-arrested extracts initiates a plethora of signaling events that take place during egg activation. Hence, the signaling downstream of calcium mobilization has been successfully studied in the egg extracts. Moreover, despite disruption of membrane-associated signaling compartments and ordered compartmentalization during extract preparation, CSF-arrested extracts can be successfully used to study early signaling events, which occur upstream of calcium release during egg activation/fertilization. In combination with the CSF-arrested extracts, activated egg rafts can reproduce some events of egg activation, including PLCgamma activation, IP3 production, transient calcium release, MAPK inactivation, and meiotic exit. This becomes possible due to complementation of the sperm-induced egg activation signaling machinery present in the rafts with the components of signal transduction system localized in the extracts. Herein, we describe protocols for studying molecular mechanisms of egg fertilization/activation using cell-free extracts and membrane rafts prepared from metaphase-arrested Xenopus eggs.

Questa baseline and pre-mining ground-water quality investigation 4. Historical surface-water quality for the Red River Valley, New Mexico, 1965 to 2001

USGS Publications Warehouse

Maest, Ann S.; Nordstrom, D. Kirk; LoVetere, Sara H.

2004-01-01

Historical water-quality samples collected from the Red River over the past 35 years were compiled, reviewed for quality, and evaluated to determine influences on water quality over time. Hydrologic conditions in the Red River were found to have a major effect on water quality. The lowest sulfate concentrations were associated with the highest flow events, especially peak, rising limb, and falling limb conditions. The highest sulfate concentrations were associated with the early part of the rising limb of summer thunderstorm events and early snowmelt runoff, transient events that can be difficult to capture as part of planned sampling programs but were observed in some of the data. The first increase in flows in the spring, or during summer thunderstorm events, causes a flushing of sulfide oxidation products from scars and mine-disturbed areas to the Red River before being diluted by rising river waters. A trend of increasing sulfate concentrations and loads over long time periods also was noted at the Questa Ranger Station gage on the Red River, possibly related to mining activities, because the same trend is not apparent for concentrations upstream. This trend was only apparent when the dynamic events of snowmelt and summer rainstorms were eliminated and only low-flow concentrations were considered. An increase in sulfate concentrations and loads over time was not seen at locations upstream from the Molycorp, Inc., molybdenum mine and downstream from scar areas. Sulfate concentrations and loads and zinc concentrations downstream from the mine were uniformly higher, and alkalinity values were consistently lower, than those upstream from the mine, suggesting that additional sources of sulfate, zinc, and acidity enter the river in the vicinity of the mine. During storm events, alkalinity values decreased both upstream and downstream of the mine, indicating that natural sources, most likely scar areas, can cause short-term changes in the buffering capacity of the Red River. The major-element water chemistry of the Red River is controlled by dissolution of calcite and gypsum and the oxidation of pyrite, and the river is generally not well buffered with respect to pH. During higher-flow periods, Red River water was diluted by calcium-carbonate waters, most likely from unmineralized Red River tributaries and areas upstream from scars. The effect of pyrite oxidation on Red River water chemistry was more pronounced after the early 1980's. Elevated zinc concentrations were most apparent during summer thunderstorm and rising limb times, which also were associated with a decrease in alkalinity and an increase in sulfate concentrations and conductivity. The water-quality results demonstrate that it is critical to consider hydrologic conditions when interpreting water chemistry in naturally mineralized or mined drainages.

MUC1 (CD227) interacts with lck tyrosine kinase in Jurkat lymphoma cells and normal T cells.

PubMed

Mukherjee, P; Tinder, T L; Basu, G D; Gendler, S J

2005-01-01

MUC1 (CD227) is a large transmembrane epithelial mucin glycoprotein, which is aberrantly overexpressed in most adenocarcinomas and is a target for immune therapy for epithelial tumors. Recently, MUC1 has been detected in a variety of hematopoietic cell malignancies including T and B cell lymphomas and myelomas; however, its function in these cells is not clearly defined. Using the Jurkat T cell lymphoma cell line and normal human T cells, we demonstrate that MUC1 is not only expressed in these cells but is also phosphorylated upon T cell receptor (TCR) ligation and associates with the Src-related T cell tyrosine kinase, p56lck. Upon TCR-mediated activation of Jurkat cells, MUC1 is found in the low-density membrane fractions, where linker of T cell activation is contained. Abrogation of MUC1 expression in Jurkat cells by MUC1-specific small interfering RNA resulted in defects in TCR-mediated downstream signaling events associated with T cell activation. These include reduction in Ca2+ influx and extracellular signal-regulated kinase 1/2 phosphorylation, leading to a decrease in CD69 expression, proliferation, and interleukin-2 production. These results suggest a regulatory role of MUC1 in modulating proximal signal transduction events through its interaction with proteins of the activation complex.

ATLAS Metadata Infrastructure Evolution for Run 2 and Beyond

NASA Astrophysics Data System (ADS)

van Gemmeren, P.; Cranshaw, J.; Malon, D.; Vaniachine, A.

2015-12-01

ATLAS developed and employed for Run 1 of the Large Hadron Collider a sophisticated infrastructure for metadata handling in event processing jobs. This infrastructure profits from a rich feature set provided by the ATLAS execution control framework, including standardized interfaces and invocation mechanisms for tools and services, segregation of transient data stores with concomitant object lifetime management, and mechanisms for handling occurrences asynchronous to the control framework's state machine transitions. This metadata infrastructure is evolving and being extended for Run 2 to allow its use and reuse in downstream physics analyses, analyses that may or may not utilize the ATLAS control framework. At the same time, multiprocessing versions of the control framework and the requirements of future multithreaded frameworks are leading to redesign of components that use an incident-handling approach to asynchrony. The increased use of scatter-gather architectures, both local and distributed, requires further enhancement of metadata infrastructure in order to ensure semantic coherence and robust bookkeeping. This paper describes the evolution of ATLAS metadata infrastructure for Run 2 and beyond, including the transition to dual-use tools—tools that can operate inside or outside the ATLAS control framework—and the implications thereof. It further examines how the design of this infrastructure is changing to accommodate the requirements of future frameworks and emerging event processing architectures.

Restriction fragment length polymorphisms in dairy and beef cattle at the growth hormone and prolactin loci.

PubMed

Hallerman, E M; Nave, A; Kashi, Y; Holzer, Z; Soller, M; Beckmann, J S

1987-01-01

Two bovine populations, a Holstein-Friesian dairy stock and a synthetic (Baladi X Hereford X Simmental X Charolais) beef stock, were screened for restriction fragment length polymorphisms (RFLPs) at the growth hormone and prolactin genes. Most RFLPs at the growth hormone gene are apparently the consequence of an insertion/deletion event which was localized to a region downstream of the structural gene. The restriction map for the genomic region including the growth hormone gene was extended. Two HindIII RFLPs at the growth hormone locus, as well as several RFLPs at the prolactin gene, seemed to be the consequence of a series of point mutations. The results are discussed in terms of the possibility that minor genomic variability underlies quantitative genetic variation.

Context for the Recent Massive Petermann Glacier Calving Event

NASA Astrophysics Data System (ADS)

Falkner, Kelly K.; Melling, Humfrey; Münchow, Andreas M.; Box, Jason E.; Wohlleben, Trudy; Johnson, Helen L.; Gudmandsen, Preben; Samelson, Roger; Copland, Luke; Steffen, Konrad; Rignot, Eric; Higgins, Anthony K.

2011-04-01

On 4 August 2010, about one fifth of the floating ice tongue of Petermann Glacier (also known as “Petermann Gletscher”) in northwestern Greenland calved (Figure 1). The resulting “ice island” had an area approximately 4 times that of Manhattan Island (about 253±17 square kilometers). The ice island garnered much attention from the media, politicians, and the public, who raised concerns about downstream implications for shipping, offshore oil and gas operations, and possible connections to Arctic and global warming. Does this event signal a change in the glacier's dynamics? Or can it be characterized as part of the glacier's natural variability? Understanding the known historical context of this event allows scientists and the public to judge its significance.

Dimpled/grooved face on a fuel injection nozzle body for flame stabilization and related method

DOEpatents

Uhm, Jong Ho; Johnson, Thomas Edward; Kim, Kwanwoo; Zuo, Baifang

2013-08-20

A fuel injection head for a fuel nozzle used in a gas turbine combustor includes a substantially hollow body formed with an upstream end face, a downstream end face and a peripheral wall extending therebetween. A plurality of pre-mix tubes or passages extend axially through the hollow body with inlets at the upstream end face and outlets at the downstream end face. An exterior surface of the downstream end face is formed with three-dimensional surface features that increase a total surface area of the exterior surface as compared to a substantially flat, planar downstream end face.

Does river restoration affect diurnal and seasonal changes to surface water quality? A study along the Thur River, Switzerland.

PubMed

Chittoor Viswanathan, Vidhya; Molson, John; Schirmer, Mario

2015-11-01

Changes in river water quality were investigated along the lower reach of the Thur River, Switzerland, following river restoration and a summer storm event. River restoration and hydrological storm events can each cause dramatic changes to water quality by affecting various bio-geochemical processes in the river, but have to date not been well documented, especially in combination. Evaluating the success of river restoration is often restricted in large catchments due to a lack of high frequency water quality data, which are needed for process understanding. These challenges were addressed in this study by measuring water quality parameters including dissolved oxygen (DO), temperature, pH, electrical conductivity (EC), nitrate and dissolved organic carbon (DOC) with a high temporal frequency (15 min-1h) over selected time scales. In addition, the stable isotopes of water (δD and δ(18)O-H2O) as well as those of nitrate (δ(15)N-NO3(-) and δ(18)O-NO3(-)) were measured to follow changes in water quality in response to the hydrological changes in the river. To compare the spatial distribution of pre- and post-restoration water quality, the sampling stations were chosen upstream and downstream of the restored section. The diurnal and seasonal changes were monitored by conducting 24-hour campaigns in three seasons (winter, summer and autumn) in 2012 and 2013. The amplitude of the diurnal changes of the various observed parameters showed significant seasonal and spatial variability. Biological processes--mainly photosynthesis and respiration--were found to be the major drivers of these diurnal cycles. During low flow in autumn, a reduction of nitrate (attributed to assimilation by autotrophs) in the pre-dawn period and a production of DOC during the daytime (attributed to photosynthesis) were observed downstream of the restored site. Further, a summer storm event was found to override the influence of these biological processes that control the diurnal changes. High frequency daily monitoring of key water quality parameters over different seasons is shown to be essential in evaluating river restoration success. Copyright © 2015 Elsevier B.V. All rights reserved.

Glacial Lake Outburst Flood Risk in Nepal and Their Mitigation Practices in Nepal

NASA Astrophysics Data System (ADS)

Gurung, S.

2017-12-01

Glacial lakes in Nepal face a huge risk of Glacial Lake Outburst Flood (GLOF) due to the ongoing effects of climate change leading to considerable amount of snow and glacier melt thus weakening the natural barriers holding these high altitude glacial lakes. Nepal is at an ever growing risk every year and always waiting for an inevitable natural disaster. Since GLOF can cause extreme huge loss of human lives and physical properties, it has now become very important to design a proper mechanism which helps in reducing hazards from such events. There is little we can do to stop natural disasters, but we can implement pro-active control measures to minimize the loss. Early Warning System is the provision of timely and effective information, which allows individuals exposed to hazards to take action, avoid or reduce risk to life and property and prepare for effective response. The basic idea behind Early Warning System is that, the earlier and more accurately we are able to predict potential risks associated with natural hazards especially flood, the more likely we will be able to manage and mitigate the disasters' impact on society, economies and environment. We are currently focused on the development of early warning system for Imja Glacial Lake. The objective of developing early warning system for Imja GLOF is to help reduce economic losses and mitigate the number of injuries or deaths by providing information that allows individuals and communities downstream of Imja Lake to protect their lives and properties by using the latest and most advanced technology available. We have installed one Automatic Weather Station near the left lateral moraine of Imja Lake to study the effects of different meteorological parameters so as to predict occurrence of any GLOF event. The sensor includes pluviometer, pyranometer, temperature and humidity sensor, wind sensor, Snowdepth sensor. Two radar level sensors are installed at the outlet of Imja Lake and downstream of Imja river for water level measurement. Also, ten movements and volumetric water content sensors are installed to detect occurrence of any GLOF event.

A simplified gis-based model for large wood recruitment and connectivity in mountain basins

NASA Astrophysics Data System (ADS)

Franceschi, Silvia; Antonello, Andrea; Vela, Ana Lucia; Cavalli, Marco; Crema, Stefano; Comiti, Francesco; Tonon, Giustino

2015-04-01

During the last 50 years in the Alps the decline of the rural and forest economy and at the depopulation of the mountain areas caused the progressive abandon of the land in general and in particular of the riparian zones and the consequent increment of the vegetation extension. On one hand the wood increases the availability of organic matter and has positive effects on mountain river systems. However, during flooding events large woods that reach the stream cause the clogging of bridges with an increase of flood hazard. The approach to the evaluation of the availability of large wood during flooding events is still a challenge. There are models that simulate the propagation of the logs downstream, but the evaluation of the trees that can reach the stream is still done using simplified GIS procedures. These procedures are the base for our research which will include LiDAR derived information on vegetation to evaluate large wood recruitment extreme events. Within the last Google Summer of Code (2014) we developed a set of tools to evaluate large wood recruitment and propagation along the channel network based on a simplified methodology for monitoring and modeling large wood recruitment and transport in mountain basins implemented by Lucía et 2014. These tools are integrated in the JGrassTools project as a dedicated section in the Hydro-Geomorphology library. The section LWRecruitment contains 10 simple modules that allow the user to start from very simple information related to geomorphology, flooding areas and vegetation cover and obtain a map of the most probable critical sections on the streams. The tools cover the two main aspects related to the iteration of large wood with the rivers: the recruitment mechanisms and the propagation downstream. While the propagation tool is very simple and does not consider the hydrodynamic of the problem, the recruitment algorithms are more specific and consider the influence of hillslopes stability and the flooding extension. The modules are available for download at www.jgrasstools.org. A simple and easy to use graphical interface to run the models is available at https://github.com/moovida/STAGE/releases.

POM Pulses: Characterizing the Physical and Chemical Properties of Particulate Organic Matter (POM) Mobilized by Large Storm Events and its Influence on Receiving Fluvial Systems

NASA Astrophysics Data System (ADS)

Johnson, E. R.; Rowland, R. D.; Protokowicz, J.; Inamdar, S. P.; Kan, J.; Vargas, R.

2016-12-01

Extreme storm events have tremendous erosive energy which is capable of mobilizing vast amounts of material from watershed sources into fluvial systems. This complex mixture of sediment and particulate organic matter (POM) is a nutrient source, and has the potential to impact downstream water quality. The impact of POM on receiving aquatic systems can vary not only by the total amount exported but also by the various sources involved and the particle sizes of POM. This study examines the composition of POM in potential sources and within-event POM by: (1) determining the amount and quality of dissolved organic matter (DOM) that can be leached from coarse, medium and fine particle classes; (2) assessing the C and N content and isotopic character of within-event POM; and (3) coupling physical and chemical properties to evaluate storm event POM influence on stream water. Storm event POM samples and source sediments were collected from a forested headwater catchment (second order stream) in the Piedmont region of Maryland. Samples were sieved into three particle classes - coarse (2mm-1mm), medium (1mm-250µm) and fine (<250µm). Extractions were performed for three particle class sizes and the resulting fluorescent organic matter was analyzed. Carbon (C) and Nitrogen (N) amount, C:N ratio, and isotopic analysis of 13C and 15N were performed on solid state event and source material. Future work will include examination of microbial communities associated with POM particle size classes. Physical size class separation of within-event POM exhibited differences in C:N ratios, δ15N composition, and extracted DOM lability. Smaller size classes exhibited lower C:N ratios, more enriched δ15N and more recalcitrant properties in leached DOM. Source material had varying C:N ratios and contributions to leached DOM. These results indicate that both source and size class strongly influence the POM contribution to fluvial systems during large storm events.

Sunlight, season, snowmelt, storm, and source affect E. coli populations in an artificially ponded stream

USGS Publications Warehouse

Whitman, R.L.; Przybyla-Kelly, K.; Shively, D.A.; Nevers, M.B.; Byappanahalli, M.N.

2008-01-01

Reducing fecal indicator bacteria, such as Escherichia coli (E. coli), in streams is important for many downstream areas. E. coli concentrations within streams may be reduced by intervening ponds or wetlands through a number of physical and biological means. A section of Dunes Creek, a small coastal stream of southern Lake Michigan, was impounded and studied for 30??months from pre-through post-construction of the experimental pond. E. coli reduction became more predictable and effective with pond age. E. coli followed the hydrograph and increased several-fold during both rainfall and snowmelt events. Seasonally, the pond was more effective at reducing E. coli during summer than winter. Late summer, non-solar reduction or inactivation of E. coli in the pond was estimated at 72% and solar inactivation at 26%. E. coli DNA fingerprinting demonstrated that the winter population was genetically more homogeneous than the summer population. Detection of FRNA coliphages suggests that there was fecal contamination during heavy rain events. An understanding of how environmental factors interact with E. coli populations is important for assessing anticipated contaminant loading and the reduction of indicator bacteria in downstream reaches. ?? 2007.

Establishment of turbidity forecasting model and early-warning system for source water turbidity management using back-propagation artificial neural network algorithm and probability analysis.

PubMed

Yang, Tsung-Ming; Fan, Shu-Kai; Fan, Chihhao; Hsu, Nien-Sheng

2014-08-01

The purpose of this study is to establish a turbidity forecasting model as well as an early-warning system for turbidity management using rainfall records as the input variables. The Taipei Water Source Domain was employed as the study area, and ANOVA analysis showed that the accumulative rainfall records of 1-day Ping-lin, 2-day Ping-lin, 2-day Fei-tsui, 2-day Shi-san-gu, 2-day Tai-pin and 2-day Tong-hou were the six most significant parameters for downstream turbidity development. The artificial neural network model was developed and proven capable of predicting the turbidity concentration in the investigated catchment downstream area. The observed and model-calculated turbidity data were applied to developing the turbidity early-warning system. Using a previously determined turbidity as the threshold, the rainfall criterion, above which the downstream turbidity would possibly exceed this respective threshold turbidity, for the investigated rain gauge stations was determined. An exemplary illustration demonstrated the effectiveness of the proposed turbidity early-warning system as a precautionary alarm of possible significant increase of downstream turbidity. This study is the first report of the establishment of the turbidity early-warning system. Hopefully, this system can be applied to source water turbidity forecasting during storm events and provide a useful reference for subsequent adjustment of drinking water treatment operation.

Understanding triggers and dynamics of wood-laden flash floods in mountain catchments: examples from the Zulg River (Switzerland)

NASA Astrophysics Data System (ADS)

Ruiz-Villanueva, Virginia; Galatiotto, Niccolo; Bürkli, Livia; Stoffel, Markus

2017-04-01

Mountain rivers are prone to flash floods, and in forested basins, large quantities of wood can be moved and transported long distances downstream during such events. Under certain circumstances, congested transport of wood may result in wood-laden flows in which a large number of logs form a mass moving together with the flow and thus alter its dynamics. This process could significantly increase the flood hazard and risk, however, the knowledge about the formation of these wood-laden flows is still very limited. The Zulg River (23 km long and 89 km2 drainage area) is located in the Swiss Prealps in the canton of Bern (Switzerland). In the Zulg catchment, heavy local precipitation usually leads to a fast reaction of the water level downstream and very often flash floods are transporting significant volume of wood. There are several bridges crossing the river at the area of Steffisburg and downstream of this town the Zulg flows into the Aare River that crosses the city of Bern few kilometres downstream. Therefore, a better understanding of these processes will help to improve the flood risk management of the region. In this work we are analysing four recent floods (i.e., 2012, 2013, 2015 and 2016) with significant wood transport and the goal is to decipher the triggering and formation of the wood-laden flash floods. We collected aerial pictures from before and after each flood to map the pre- and post-flood conditions and mapped riverscape units, landslides and the wood logs and jams already deposited along the river channel. The forest stand volumes recruited during the events is analysed based on the land use maps available and provided by the Cantonal Forest Service. We also analysed movies taken by witnesses during these flash flood events, which may potentially provide highly valuable information (i.e., the amount and type of wood in motion or what was roughly the velocity and direction of the water) to quantify wood fluxes. However, the usage of these home movies is challenging and we are applying different techniques to extract as much information as possible from these kind of videos. Results will shed light into the dynamics of the wood-laden flows estimating wood fluxes and volumes in the Zulg River, but they will also contribute to better understand these processes in mountain rivers in general. This study is performed within the scope of the Research Project WoodFlow founded by the Swiss Federal Office for the Environment (FOEN).

MRI of plaque characteristics and relationship with downstream perfusion and cerebral infarction in patients with symptomatic middle cerebral artery stenosis.

PubMed

Lu, Shan-Shan; Ge, Song; Su, Chun-Qiu; Xie, Jun; Mao, Jian; Shi, Hai-Bin; Hong, Xun-Ning

2017-10-30

Intracranial plaque characteristics are associated with stroke events. Differences in plaque features may explain the disconnect between stenosis severity and the presence of ischemic stroke. To investigate the relationship between plaque characteristics and downstream perfusion changes, and their contribution to the occurrence of cerebral infarction beyond luminal stenosis. Case control. Forty-six patients with symptomatic middle cerebral artery (MCA) stenosis (with acute cerebral infarction, n = 30; without acute cerebral infarction, n = 16). 3.0T with 3D turbo spin echo sequence (3D-SPACE). Luminal stenosis grade, plaque features including lesion T 2 and T 1 hyperintense components, plaque enhancement grade, and plaque distribution were assessed. Brain perfusion was evaluated on mean transient time maps based on the Alberta Stroke Program Early CT score (MTT-ASPECTS). Plaque features, grade of luminal stenosis, and MTT-ASPECTS were compared between two groups. The association between plaque features and MTT-ASPECTS were assessed using Spearman's correlation analysis. Multivariate logistic regression and receiver operating characteristic (ROC) curves were constructed to assess the effect of significant variables alone and their combination in determining the occurrence of cerebral infarction. Stronger enhanced plaques were associated with downstream lower MTT-ASPECTS (P = 0.010). Plaque enhancement grade (P = 0.039, odds ratio [OR] 5.9, 95% confidence interval [CI] 1.1-32) and MTT-ASPECTS (P = 0.003, OR 2.6, 95% CI 1.4-4.7) were associated with a recent cerebral infarction, whereas luminal stenosis grade was not (P = 0.128). The combination of MTT-ASPECTS and plaque enhancement grade provided incremental information beyond luminal stenosis grade alone. The area under the receiver operating characteristic curve (AUC) improved from 0.535 to 0.921 (P < 0.05). Strongly enhanced plaques are associated with a higher likelihood of downstream perfusion impairment. Plaque enhancement and perfusion evaluation may play a complementary role to luminal stenosis in determining the occurrence of acute cerebral infarction. 4 Technical Efficacy: Stage 2 J. Magn. Reson. Imaging 2017. © 2017 International Society for Magnetic Resonance in Medicine.

Assessing downstream flood impacts due to a potential GLOF from Imja Lake in Nepal

NASA Astrophysics Data System (ADS)

Somos-Valenzuela, M. A.; McKinney, D. C.; Byers, A. C.; Rounce, D. R.; Portocarrero, C.; Lamsal, D.

2014-11-01

Glacial-dominated areas pose unique challenges to downstream communities in adapting to recent and continuing global climate change, including increased threats of glacial lake outburst floods (GLOFs) that can increase risk due to flooding of downstream communities and cause substantial impacts on regional social, environmental and economic systems. The Imja glacial lake in Nepal, with potential to generate a GLOF, was studied using a two-dimensional debris flow inundation model in order to evaluate the effectiveness of proposed measures to reduce possible flooding impacts to downstream communities by lowering the lake level. The results indicate that only minor flood impact reduction is achieved in the downstream community of Dingboche with modest (~3 m) lake lowering. Lowering the lake by 10 m shows a significant reduction in inundated area. However, lowering the lake by 20 m almost eliminates all flood impact at Dingboche. Further downstream at Phakding, the impact of the GLOF is significant and similar reductions in inundation are likely as a result of lake lowering.

Integrating a Typhoon Event Database with an Optimal Flood Operation Model on the Real-Time Flood Control of the Tseng-Wen Reservoir

NASA Astrophysics Data System (ADS)

Chen, Y. W.; Chang, L. C.

2012-04-01

Typhoons which normally bring a great amount of precipitation are the primary natural hazard in Taiwan during flooding season. Because the plentiful rainfall quantities brought by typhoons are normally stored for the usage of the next draught period, the determination of release strategies for flood operation of reservoirs which is required to simultaneously consider not only the impact of reservoir safety and the flooding damage in plain area but also for the water resource stored in the reservoir after typhoon becomes important. This study proposes a two-steps study process. First, this study develop an optimal flood operation model (OFOM) for the planning of flood control and also applies the OFOM on Tseng-wun reservoir and the downstream plain related to the reservoir. Second, integrating a typhoon event database with the OFOM mentioned above makes the proposed planning model have ability to deal with a real-time flood control problem and names as real-time flood operation model (RTFOM). Three conditions are considered in the proposed models, OFOM and RTFOM, include the safety of the reservoir itself, the reservoir storage after typhoons and the impact of flooding in the plain area. Besides, the flood operation guideline announced by government is also considered in the proposed models. The these conditions and the guideline can be formed as an optimization problem which is solved by the genetic algorithm (GA) in this study. Furthermore, a distributed runoff model, kinematic-wave geomorphic instantaneous unit hydrograph (KW-GIUH), and a river flow simulation model, HEC-RAS, are used to simulate the river water level of Tseng-wun basin in the plain area and the simulated level is shown as an index of the impact of flooding. Because the simulated levels are required to re-calculate iteratively in the optimization model, applying a recursive artificial neural network (recursive ANN) instead of the HEC-RAS model can significantly reduce the computational burden of the entire optimization problem. This study applies the developed methodology to Tseng-wun Reservoir. Forty typhoon events are collected as the historical database and six typhoon events are used to verify the proposed model. These typhoons include Typhoon Sepat and Typhoon Korsa in 2007 and Typhoon Kalmaegi, Typhoon Fung-Wong, Typhoon Sinlaku and Typhoon Jangmi in 2008. The results show that the proposed model can reduce the flood duration at the downstream area. For example, the real-time flood control model can reduce the flood duration by four and three hours for Typhoon Korsa and Typhoon Sinlaku respectively. This results indicate that the developed model can be a very useful tool for real-time flood control operation of reservoirs.

Skeletal muscle secretome in Duchenne muscular dystrophy: a pivotal anti-inflammatory role of adiponectin.

PubMed

Lecompte, S; Abou-Samra, M; Boursereau, R; Noel, L; Brichard, S M

2017-07-01

Persistent inflammation exacerbates the progression of Duchenne muscular dystrophy (DMD). The hormone, adiponectin (ApN), which is decreased in the metabolic syndrome, exhibits anti-inflammatory properties on skeletal muscle and alleviates the dystrophic phenotype of mdx mice. Here, we investigate whether ApN retains its anti-inflammatory action in myotubes obtained from DMD patients. We unravel the underlying mechanisms by studying the secretome and the early events of ApN. Primary cultures of myotubes from DMD and control patients were treated or not by ApN after an inflammatory challenge. Myokines secreted in medium were identified by cytokine antibody-arrays and ELISAs. The early events of ApN signaling were assessed by abrogating selected genes. ApN retained its anti-inflammatory properties in both dystrophic and control myotubes. Profiling of secretory products revealed that ApN downregulated the secretion of two pro-inflammatory factors (TNFα and IL-17A), one soluble receptor (sTNFRII), and one chemokine (CCL28) in DMD myotubes, while upregulating IL-6 that exerts some anti-inflammatory effects. These changes were explained by pretranslational mechanisms. Earlier events of the ApN cascade involved AdipoR1, the main receptor for muscle, and the AMPK-SIRT1-PGC-1α axis leading, besides alteration of the myokine profile, to the upregulation of utrophin A (a dystrophin analog). ApN retains its beneficial properties in dystrophic muscles by activating the AdipoR1-AMPK-SIRT1-PGC-1α pathway, thereby inducing a shift in the secretion of downstream myokines toward a less inflammatory profile while upregulating utrophin. ApN, the early events of the cascade and downstream myokines may be therapeutic targets for the management of DMD.

Flood risk analysis for flood control and sediment transportation in sandy regions: A case study in the Loess Plateau, China

NASA Astrophysics Data System (ADS)

Guo, Aijun; Chang, Jianxia; Wang, Yimin; Huang, Qiang; Zhou, Shuai

2018-05-01

Traditional flood risk analysis focuses on the probability of flood events exceeding the design flood of downstream hydraulic structures while neglecting the influence of sedimentation in river channels on regional flood control systems. This work advances traditional flood risk analysis by proposing a univariate and copula-based bivariate hydrological risk framework which incorporates both flood control and sediment transport. In developing the framework, the conditional probabilities of different flood events under various extreme precipitation scenarios are estimated by exploiting the copula-based model. Moreover, a Monte Carlo-based algorithm is designed to quantify the sampling uncertainty associated with univariate and bivariate hydrological risk analyses. Two catchments located on the Loess plateau are selected as study regions: the upper catchments of the Xianyang and Huaxian stations (denoted as UCX and UCH, respectively). The univariate and bivariate return periods, risk and reliability in the context of uncertainty for the purposes of flood control and sediment transport are assessed for the study regions. The results indicate that sedimentation triggers higher risks of damaging the safety of local flood control systems compared with the event that AMF exceeds the design flood of downstream hydraulic structures in the UCX and UCH. Moreover, there is considerable sampling uncertainty affecting the univariate and bivariate hydrologic risk evaluation, which greatly challenges measures of future flood mitigation. In addition, results also confirm that the developed framework can estimate conditional probabilities associated with different flood events under various extreme precipitation scenarios aiming for flood control and sediment transport. The proposed hydrological risk framework offers a promising technical reference for flood risk analysis in sandy regions worldwide.

Advanced Imaging Utilization and Cost Savings Among Medicare Shared Savings Program Accountable Care Organizations: An Initial Exploratory Analysis.

PubMed

Rosenkrantz, Andrew B; Duszak, Richard

2018-03-01

The purpose of this study was to explore associations between CT and MRI utilization and cost savings achieved by Medicare Shared Savings Program (MSSP)-participating accountable care organizations (ACOs). Summary data were obtained for all MSSP-participating ACOs (n = 214 in 2013; n = 333 in 2014). Multivariable regressions were performed to assess associations of CT and MRI utilization with ACOs' total savings and reaching minimum savings rates to share in Medicare savings. In 2014, 54.4% of ACOs achieved savings, meeting minimum rates to share in savings in 27.6%. Independent positive predictors of total savings included beneficiary risk scores (β = +20,265,720, P = .003) and MRI events (β = +19,964, P = .018) but not CT events (β = +2,084, P = .635). Independent positive predictors of meeting minimum savings rates included beneficiary risk scores (odds ratio = 2108, P = .001) and MRI events (odds ratio = 1.008, P = .002), but not CT events (odds ratio = 1.002, P = .289). Measures not independently associated with savings were total beneficiaries; beneficiaries' gender, age, race or ethnicity; and Medicare enrollment type (P > .05). For ACOs with 2013 and 2014 data, neither increases nor decreases in CT and MRI events between years were associated with 2014 total savings or meeting savings thresholds (P ≥ .466). Higher MRI utilization rates were independently associated with small but significant MSSP ACO savings. The value of MRI might relate to the favorable impact of appropriate advanced imaging utilization on downstream outcomes and other resource utilization. Because MSSP ACOs represent a highly select group of sophisticated organizations subject to rigorous quality and care coordination standards, further research will be necessary to determine if these associations are generalizable to other health care settings. Copyright © 2017 American College of Radiology. Published by Elsevier Inc. All rights reserved.

Groundwater-Surface Water Interactions and Downstream Transport of Water, Heat, and Solutes in a Hydropeaked River

NASA Astrophysics Data System (ADS)

Ferencz, S. B.; Cardenas, M. B.; Neilson, B. T.; Watson, J.

2017-12-01

A majority of the world's largest river systems are regulated by dams. In addition to being used for water resources management and flood prevention, many large dams are also used for hydroelectric power generation. In the United States, dams account for 7% of domestic electricity, and hydropower accounts for 16% of worldwide electricity production. To help meet electricity demand during peak usage times, hydropower utilities often increase their releases of water during high demand periods. This practice, termed hydropeaking, can cause large transient flow regimes downstream of hydroelectric dams. These transient flow increases can result in order of magnitude daily fluctuations in discharge, and the released water can have different thermal and chemical properties than ambient river water. As hydropeaking releases travel downstream, the temporary rise in stage and increase in discharge can enhance surface water-groundwater (SW-GW) exchange between the river and its alluvial aquifer. This dam-induced SW-GW exchange, combined with hydrodynamic attenuation and heat exchange processes, result in complex responses downstream. The dam-regulated Lower Colorado River downstream of Austin, TX was used as a natural laboratory to observe SW-GW interactions and downstream transport of water, heat, and solutes under hydropeaking conditions. To characterize SW-GW interactions, well transects were installed in the banks of the river to observe exchanges between the river and alluvial aquifer. The well transects were installed at three different distances from the dam (15km, 35km, and 80km). At each well transect conductivity, temperature, and pressure sensors were deployed in the monitoring wells and in the channel. Additional conductivity and temperature sensors were deployed along the study reach to provide a more detailed record of heat and solute transport during hydropeaking releases. The field data spans over two months of daily dam releases that were punctuated by two large natural storm events. To our knowledge, this study is the first to use multiple downstream field sites to characterize how dam-induced SW-GW interactions and in-stream temperature and solute transport behave under hydropeaking conditions.

System for tuning a combustor of a gas turbine

DOEpatents

Hughes, Michael John

2016-12-27

A system for tuning a combustor of a gas turbine includes a flow sleeve having an annular main body. The main body includes an upstream end, a downstream end, an inner surface and an outer surface. A cooling channel extends along the inner surface of the main body. The cooling channel extends at least partially between the downstream end and the upstream end of the main body.

Sound suppression mixer

NASA Technical Reports Server (NTRS)

Brown, William H. (Inventor)

1994-01-01

A gas turbine engine flow mixer includes at least one chute having first and second spaced apart sidewalls joined together at a leading edge, with the sidewalls having first and second trailing edges defining therebetween a chute outlet. The first trailing edge is spaced longitudinally downstream from the second trailing edge for defining a septum in the first sidewall extending downstream from the second trailing edge. The septum includes a plurality of noise attenuating apertures.

A Stochastic Model For Extracting Sediment Delivery Timescales From Sediment Budgets

NASA Astrophysics Data System (ADS)

Pizzuto, J. E.; Benthem, A.; Karwan, D. L.; Keeler, J. J.; Skalak, K.

2015-12-01

Watershed managers need to quantify sediment storage and delivery timescales to understand the time required for best management practices to improve downstream water quality. To address this need, we route sediment downstream using a random walk through a series of valley compartments spaced at 1 km intervals. The probability of storage within each compartment, q, is specified from a sediment budget and is defined as the ratio of the volume deposited to the annual sediment flux. Within each compartment, the probability of sediment moving directly downstream without being stored is p=1-q. If sediment is stored within a compartment, its "resting time" is specified by a stochastic exponential waiting time distribution with a mean of 10 years. After a particle's waiting time is over, it moves downstream to the next compartment by fluvial transport. Over a distance of "n" compartments, a sediment particle may be stored from 0 to n times with the probability of each outcome (store or not store) specified by the binomial distribution. We assign q = 0.02, a stream velocity of 0.5 m/s, an event "intermittency "of 0.01, and assume a balanced sediment budget. Travel time probability density functions have a steep peak at the shortest times, representing rapid transport in the channel of the fraction of sediment that moves downstream without being stored. However, the probability of moving downstream "n" km without storage is pn (0.90 for 5 km, 0.36 for 50 km, 0.006 for 250 km), so travel times are increasingly dominated by storage with increasing distance. Median travel times for 5, 50, and 250 km are 0.03, 4.4, and 46.5 years. After a distance of approximately 2/q or 100 km (2/0.02/km), the median travel time is determined by storage timescales, and active fluvial transport is irrelevant. Our model extracts travel time statistics from sediment budgets, and can be cast as a differential equation and solved numerically for more complex systems.

Effects of Concrete Channels on Stream Biogeochemistry, Maryland Coastal Plain

NASA Astrophysics Data System (ADS)

Prestegaard, K. L.; Gilbert, L.; Phemister, K.

2005-05-01

In the 1950's and 60's, extensive networks of cement-lined channels were built in suburban watersheds near Washington, D.C. to convey storm water to downstream locations. These cement-lined stream channels limit interactions between surface and groundwater and they provide sources of alkalinity in Maryland Coastal Plain watersheds that normally have low alkalinity. This project was designed to 1) compare base flow water chemistry in headwater reaches of urban and non-urban streams, and 2) to evaluate downstream changes in water chemistry in channelized urban streams in comparison with non-urban reference streams. During a drought year, headwater streams in both urban and non-urban sites had significant concentrations of Fe(II) that were discharged from groundwater sources and rapidly oxidized by iron-oxidizing bacteria. During a wet year, the concentrations of Fe(II) were higher in headwater urban streams than in the non-urban streams. This suggests that impervious surfaces in headwater urban watersheds prevent the recharge of oxygen-rich waters during storm events, which maintains iron-rich groundwater discharge to the stream. Downstream changes in water chemistry are prominent in cement-lined urban channels because they are associated with distinctive microbial communities. The headwater zones of channelized streams are dominated by iron-ozidizing bacteria, that are replaced downstream by manganese-oxidizing zones, and replaced further downstream by biofilms dominated by photosynthesizing cyanobacteria. The reaches dominated by cyanobacteria exhibit diurnal changes in pH due to uptake of CO2 for photosynthesis. Diurnal changes range from 7.5 to 8.8 in the summer months to 7.0 to 7.5 in the cooler months, indicating both the impact of photosynthesis and the additional source of alkalinity provided by concrete. The dissolved oxygen, pH, and other characteristics of tributaries dominated by cyanobacteria are similar to the water chemistry characteristics observed in much larger urban river channels further downstream. These downstream redox zonations, microbial habitats, and pH characteristics observed in channelized tributaries are very different from non-urban watersheds in the Maryland Coastal Plain, which have pH values less than 7 and do not have the prominent redox zonations and associated microbial habitats. These downstream changes in redox chemistry and pH in urban stream channels have implications for the transport and retention of heavy metals in urban streams.

Cost-Effective, Insitu Field Measurements for Determining the Water Retention Quantification onBehavior of Individual Right-of-Way Bioswales

NASA Astrophysics Data System (ADS)

Wang, S.; McGillis, W. R.; Hu, R.; Culligan, P. J.

2017-12-01

Green infrastructure (GI) interventions, such as right-of-way bioswales, are being implemented in many urban areas, including New York City, to help mitigate the negative impacts of stormwater runoff. To understand the storm water retention capacity of bioswales, hydrological models, at scales ranging from the tributary area of a single right-of-way bioswale to an entire watershed, are often invoked. The validation and calibration of these models is, however, currently hampered by lack of extensive field measurements that quantify bioswale stormwater retention behaviors for different storm sizes and bioswale configurations. To overcome this problem, three field methods to quantify the water retention capacity of individual bioswales were developed. The methods are potentially applicable to other applications concerned with quantifying flow regimes in urban area. Precise measurements with high time resolutions and low environmental impacts are desired for gauging the hydraulic performance of bioswales, and similar GI configurations. To satisfy these requirements, an in-field measurement method was developed which involved the deployment of acoustic water-level sensors to measure the upstream and downstream water levels of flow into and out of a bioswale located in the Bronx areas of New York City. The measurements were made during several individual storm events. To provide reference flow rates to enable accurate calibration of the acoustic water level measurements, two other conductometry-based methods, which made use of YSI sensors and injected calcium chloride solutions, were also developed and deployed simultaneously with the water level measurements. The suite of data gathered by these methods enabled the development of a relationship between stage-discharge and rainfall intensity, which was then used to obtain the upstream and downstream hydrographs for the individual bioswale for the different storm events. This presentation will describe in detail the developed field methods, and will present results arising from the deployment of the methods, including results on the stormwater infiltration quantity and infiltration rate of the studied bioswale. The field methods are easily deployed at other bioswales sites and for other similar GI configurations.

Storm Water Quality in Los Alamos Canyon following the Cerro Grande Fire

DOE Office of Scientific and Technical Information (OSTI.GOV)

M. Johansen; B. Enz; B. Gallaher

In May 2000, the Cerro Grande Fire burned about 7400 acres of forest on the Los Alamos National Laboratory (LANL) and about 10,000 acres in watersheds above LANL on Santa Fe National Forest lands. The resulting burned landscapes raised concerns of increased storm water runoff and transport of contaminants by runoff in the canyons traversing LANL. On June 2 and 3, 2000, rain fell in the Los Alamos Canyon watershed generating storm water runoff in the canyon bottom. This event was important in that it was the first significant runoff on LANL following the fire and occurred in a canyonmore » containing known legacy waste sites. Samples from this runoff were analyzed for radionuclide, metal, inorganic, and organic constituents. Results show radionuclide concentrations at or below previous (pre-fire) maximum levels at locations on LANL and downstream. However, greater concentrations of some fallout-associated radionuclides (cesium-137 and strontium-90) were seen arriving on LANL from upstream areas compared to pre-fire conditions. Tests indicate most of the radionuclides in the samples were bound to sediments, not dissolved in water. Most radionuclide concentrations in sediments were below LANL Screening Action Levels, with cesium-137 and strontium-90 as exceptions. Most radionuclide concentrations in samples taken at LANL's downstream boundary were greater than those taken upstream, indicating the presence of contributing sources on LANL. For comparison purposes, doses were calculated on a mrem per liter of unfiltered water basis for 11 radionuclides commonly associated with atmospheric fallout and with LANL operations. The maximum dose was 0.094 mrem per liter unfiltered water and was largely associated with plutonium-239/240. In contrast, all filtered samples had total doses less than 0.001 mrem per liter. Compared to past data, potential doses were not increased by the fire during this initial runoff event. Of the 25 metals tested for, seven were above pre-fire levels, including copper, lead, manganese, selenium, strontium, uranium, and zinc. However, dissolved metal concentrations did not exceed State livestock and wildlife standards. Of the 18 general chemistry parameters tested, eight exceeded historic norms, including calcium, potassium, total phosphorus, cyanide, and magnesium.« less

Taste Receptor Signaling-- From Tongues to Lungs

PubMed Central

Kinnamon, Sue C.

2013-01-01

Taste buds are the transducing endorgans of gustation. Each taste bud comprises 50–100 elongated cells, which extend from the basal lamina to the surface of the tongue, where their apical microvilli encounter taste stimuli in the oral cavity. Salts and acids utilize apically located ion channels for transduction, while bitter, sweet and umami (glutamate) stimuli utilize G protein coupled receptors (GPCRs) and second messenger signaling mechanisms. This review will focus on GPCR signaling mechanisms. Two classes of taste GPCRs have been identified, the T1Rs for sweet and umami (glutamate) stimuli, and the T2Rs for bitter stimuli. These low affinity GPCRs all couple to the same downstream signaling effectors that include Gβγ activation of PLCβ2, IP3-mediated release of Ca2+ from intracellular stores, and Ca2+-dependent activation of the monovalent selective cation channel, TrpM5. These events lead to membrane depolarization, action potentials, and release of ATP as a transmitter to activate gustatory afferents. The Gα subunit, α-gustducin, activates a phosphodiesterase to decrease intracellular cAMP levels, although the precise targets of cAMP have not been identified. With the molecular identification of the taste GPCRs, it has become clear that taste signaling is not limited to taste buds, but occurs in many cell types of the airways. These include solitary chemosensory cells, ciliated epithelial cells, and smooth muscle cells. Bitter receptors are most abundantly expressed in the airways, where they respond to irritating chemicals and promote protective airway reflexes, utilizing the same downstream signaling effectors as taste cells. PMID:21481196

Evaluating turbidity and suspended-sediment concentration relations from the North Fork Toutle River basin near Mount St. Helens, Washington; annual, seasonal, event, and particle size variations - a preliminary analysis.

USGS Publications Warehouse

Uhrich, Mark A.; Spicer, Kurt R.; Mosbrucker, Adam; Christianson, Tami

2015-01-01

Regression of in-stream turbidity with concurrent sample-based suspended-sediment concentration (SSC) has become an accepted method for producing unit-value time series of inferred SSC (Rasmussen et al., 2009). Turbidity-SSC regression models are increasingly used to generate suspended-sediment records for Pacific Northwest rivers (e.g., Curran et al., 2014; Schenk and Bragg, 2014; Uhrich and Bragg, 2003). Recent work developing turbidity-SSC models for the North Fork Toutle River in Southwest Washington (Uhrich et al., 2014), as well as other studies (Landers and Sturm, 2013, Merten et al., 2014), suggests that models derived from annual or greater datasets may not adequately reflect shorter term changes in turbidity-SSC relations, warranting closer inspection of such relations. In-stream turbidity measurements and suspended-sediment samples have been collected from the North Fork Toutle River since 2010. The study site, U.S. Geological Survey (USGS) streamgage 14240525 near Kid Valley, Washington, is 13 river km downstream of the debris avalanche emplaced by the 1980 eruption of Mount St. Helens (Lipman and Mullineaux, 1981), and 2 river km downstream of the large sediment retention structure (SRS) built from 1987–1989 to mitigate the associated sediment hazard. The debris avalanche extends roughly 25 km down valley from the edifice of the volcano and is the primary source of suspended sediment moving past the streamgage (NF Toutle-SRS). Other significant sources are debris flow events and sand deposits upstream of the SRS, which are periodically remobilized and transported downstream. Also, finer material often is derived from the clay-rich original debris avalanche deposit, while coarser material can derive from areas such as fluvially reworked terraces.

Erosion of the Yarlung-Tsangpo Gorge sustained by episodic megaflooding

NASA Astrophysics Data System (ADS)

Lang, K. A.; Huntington, K. W.

2012-12-01

As the Yarlung-Tsangpo river descends through the easternmost Himalaya to join the Brahmaputra river in India, it carves a ~2 km-deep knickzone: the Yarlung-Tsangpo Gorge. Within the gorge, fluvial incision has kept pace with an active crustal scale antiform, exhuming mid-crustal material over Pliocene time at rates up to 7-10 km/Myr. This close spatial correspondence of erosion and exhumation has led previous researchers to hypothesize a self-perpetuating relationship between focused erosion and rock uplift in this ~1200 km^2 region. While high discharge in the river today produces bed stresses that may have the erosional capability to match rock uplift rates, this hypothesis also requires erosion to be localized in the gorge region over timescales spanning multiple glacial periods during which the upstream drainage was episodically dammed by glaciers and discharge was variable. We interpret downstream flood deposits corresponding to this episodic damming as direct evidence of megaflood action as the principal agent of gorge erosion, spanning multiple glacial periods and potentially matching the million-year exhumation rates independently measured in the gorge. Previous researchers documented evidence of glacial damming throughout the fluvial network upstream of the gorge, where moraine and landslide dams are abundant, often beneath dissected lake deposits. We report flood deposits downstream of the gorge, remaining along valley walls at multiple elevations up to 150 m off the modern channel. Using LA-ICPMS U-Pb dating of detrital zircons from these flood sediments, we demonstrate that these high-magnitude flood events disproportionately excavated material from the Yarlung-Tsangpo Gorge, and propose an alternative erosional mechanism to match rock uplift in the gorge over a 10^6 year timescale. We analyzed five flood deposits spanning a range of elevations above the modern channel and four deposits from a documented lower-magnitude flood in 2000. We constrain flood sediment provenance with petrographic analysis, using U-Pb dating to discern the proportion of sediment derived from Himalayan bedrock in the immediate gorge region from that transported through the gorge. Himalayan sourced U-Pb ages are >300 Ma, peaking at ~500 Ma, whereas zircons sourced upstream of the gorge are dominated by the <100 Ma ages from Trans-Himalayan plutons and Tethyan sediments. While the dry-season zircon population downstream of the gorge reflects a ~30-50% bedload enrichment of gorge-derived Himalayan zircons already, flood sediments from high-magnitude events are nearly twice as enriched. Interestingly however, sediments from the lower-magnitude 2000 flood are not demonstrably more enriched, suggesting a threshold flood magnitude necessary for gorge excavation. Including this new data, we propose that it is high-magnitude events, likely during glacial periods, that contribute most of the total erosion of the gorge. Erosion is achieved by a combined process of direct bed incision during flooding and post-flood landsliding of undercut slopes. Our results compliment a growing collection of detrital data from within the Yarlung-Brahamaputra network and contribute to the broader discussion of the influence of high-magnitude, low-frequency events on long-term landscape evolution and how that evolution may be preserved in the sedimentary record.

Storm event-scale nutrient attenuation in constructed wetlands experiencing a Mediterranean climate: A comparison of a surface flow and hybrid surface-subsurface flow system.

PubMed

Adyel, Tanveer M; Oldham, Carolyn E; Hipsey, Matthew R

2017-11-15

Among different Water Sensitive Urban Design options, constructed wetlands (CWs) are used to protect and restore downstream water quality by attenuating nutrients generated by stormwater runoff. This research compared the nutrient attenuation ability during a diverse population of storm events of two CWs: (a) a hybrid CW with multiple alternating surface flow (SF) and laterite-based subsurface flow (SSF) compartments, and (b) a single stage SF CW. Within-storm variability, nutrient concentrations were assessed at 2 to 3-h intervals at both the main inlet and outlet of each CW. Dissolved oxygen concentrations of the surface waters were also monitored at 10-min intervals using high frequency in situ sensors. Nutrient loads into the CWs were observed to be higher when a high rainfall event occurred, particularly after longer antecedent dry conditions. Longer hydraulic retention times promoted higher attenuation at both sites. However, the relative extent of nutrient attenuation differed between the CW types; the mean total nitrogen (TN) attenuation in the hybrid and SF CW was 45 and 48%, respectively. The hybrid CW attenuated 67% total phosphorus (TP) loads on average, while the SF CW acted as a net TP source. Periodic storm events transitioned the lentic CW into a lotic CW and caused riparian zone saturation; it was therefore hypothesized that such saturation of organic matter rich-riparian zones led to release of TP in the system. The hybrid CW attenuated the released TP in the downstream laterite-based SSF compartments. Diel oxygen metabolism calculated before and after the storm events was found to be strongly correlated with water temperature, solar exposure and antecedent dry condition during the pre-storm conditions. Furthermore, the SF CW showed a significant relationship between overall nutrient load attenuation and the change in oxygen metabolism during the storm perturbation, suggesting oxygen variation could be a useful proxy indicator of CW function. Copyright © 2017 Elsevier B.V. All rights reserved.

Optimized scalable network switch

DOEpatents

Blumrich, Matthias A [Ridgefield, CT; Chen, Dong [Croton On Hudson, NY; Coteus, Paul W [Yorktown Heights, NY; Gara, Alan G [Mount Kisco, NY; Giampapa, Mark E [Irvington, NY; Heidelberger, Philip [Cortlandt Manor, NY; Steinmacher-Burow, Burkhard D [Mount Kisco, NY; Takken, Todd E [Mount Kisco, NY; Vranas, Pavlos M [Bedford Hills, NY

2007-12-04

In a massively parallel computing system having a plurality of nodes configured in m multi-dimensions, each node including a computing device, a method for routing packets towards their destination nodes is provided which includes generating at least one of a 2m plurality of compact bit vectors containing information derived from downstream nodes. A multilevel arbitration process in which downstream information stored in the compact vectors, such as link status information and fullness of downstream buffers, is used to determine a preferred direction and virtual channel for packet transmission. Preferred direction ranges are encoded and virtual channels are selected by examining the plurality of compact bit vectors. This dynamic routing method eliminates the necessity of routing tables, thus enhancing scalability of the switch.

Optimized scalable network switch

DOEpatents

Blumrich, Matthias A.; Chen, Dong; Coteus, Paul W.

2010-02-23

In a massively parallel computing system having a plurality of nodes configured in m multi-dimensions, each node including a computing device, a method for routing packets towards their destination nodes is provided which includes generating at least one of a 2m plurality of compact bit vectors containing information derived from downstream nodes. A multilevel arbitration process in which downstream information stored in the compact vectors, such as link status information and fullness of downstream buffers, is used to determine a preferred direction and virtual channel for packet transmission. Preferred direction ranges are encoded and virtual channels are selected by examining the plurality of compact bit vectors. This dynamic routing method eliminates the necessity of routing tables, thus enhancing scalability of the switch.

Fast shocks at the edges of hot diamagnetic cavities upstream from the earth's bow shock

NASA Technical Reports Server (NTRS)

Fuselier, S. A.; Thomsen, M. F.; Gosling, J. T.; Bame, S. J.; Russell, C. T.

1987-01-01

Recently, several events described as hot expanding diamagnetic cavities have been observed upstream from the earth's bow shock using the ISEE 1 and 2 spacecraft. It has been suggested that fast shocks may form at the edges of some of these events because of the rapid expansion of the cavities. Here, plasma density, temperature, velocity, and total field changes across the edges of several events were examined, and these changes were found to be consistent with the presence of shocks there. The presence of flat-topped electron distributions and occasional electron beams at and down-stream from the edges provides additional evidence for shocks. Plasma wave observations also show shocklike electrostatic noise at the edges of several events. It is concluded that the edges of diamagnetic cavity events are often shocks, with a range of shock strengths similar to that observed in the interplanetary medium. The range of shock strengths may be the result of different convection and/or expansion speeds of the cavities.

European downstream oil industry safety performance : statistical summary of reported incidents, 1996

DOT National Transportation Integrated Search

1997-12-01

This report is the third by CONCAWE reviewing the safety performance of the downstream oil industry in Western Europe. It includes the results of 28 companies which together represent over 90% of the oil refining capacity in Europe. It is therefore a...

Diagnostics for Hypersonic Engine Control

DTIC Science & Technology

2013-02-01

weredirected across the flow at the entrance to the isolator just downstream of the facility nozzle . The near-infrared beams were frequency tuned across...the facility nozzle were used to study the dynamics of the shock train structure during these transient combustor events. They revealed the...entropy fluctuations in supersonic boundary layers can be quite short in time – on the order of tens of microseconds. We therefore sought data

Negligible contribution of reservoir dams to organic and inorganic transport in the lower Mimi River, Japan

NASA Astrophysics Data System (ADS)

Nukazawa, Kei; Kihara, Kousuke; Suzuki, Yoshihiro

2017-12-01

Rivers fulfill an essential ecological role by forming networks for material transport from upland forests to coastal areas. The way in which dams affect the organic and inorganic cycles in such systems is not well understood. Herein, we investigated the longitudinal profiles of the various components of the water chemistry across three cascade dams in Japan: the Yamasubaru Dam, Saigou Dam, and Ohuchibaru Dam, which are situated along the sediment-productive Mimi River in different flow conditions. We analyzed the following water quality components: suspended solids (SS), turbidity, total iron (TFe), dissolved iron (DFe), total organic carbon (TOC), total nitrogen (TN), total phosphorus (TP), humic substance (HS), and major ionic components (Na+, Mg2+, Ca2+, Cl-, NO3-, and SO42-) in the downstream channels of the three dams during the low-intermediate-flow and high-flow events from 2012 to 2014. We estimated hourly loads of each component using hourly turbidity data and discharge data (i.e., L-Q model) separately, and the results are integrated to estimate the annual fluxes. The annual fluxes between the methods were compared to verify predictability of the conventional L-Q models. Annual flux of TOC, TN, DFe, and HS estimated by the turbidity displayed similar values, whereas the flux of SS, TFe, and TP tended to increase downstream of the dams. Among the dams, estimated flux proportions for TP and TFe were higher during high-flow events (74%-94%). Considering geographic conditions (e.g., absence of major tributary between the dams), the result implies that accumulated TP and TFe in the reservoirs may be flushed and transported downstream with SS over the short height dams during flood events. Assuming this process, the reservoir dams probably make only a fractional contribution to the organic and inorganic transport in the catchment studied. The percent flux errors for SS, TFe, and TP fluxes ranged from -7.2% to -97% (except for the TP flux in 2013), which highlights the risk of underestimating these components when using an L-Q model.

Particle Velocity Measuring System

NASA Technical Reports Server (NTRS)

Arndt, G. Dickey (Inventor); Carl, James R. (Inventor)

1998-01-01

Method and apparatus are provided for determining the velocity of individual food particles within a liquid/solid food mixture that is cooked by an aseptic cooking method whereby the food mixture is heated as it flows through a flowline. At least one upstream and at least one downstream microwave transducer are provided to determine the minimum possible travel time of the fastest food particle through the flowline. In one embodiment, the upstream detector is not required. In another embodiment, a plurality of small dipole antenna markers are secured to a plurality of food particles to provide a plurality of signals as the markers pass the upstream and downstream transducers. The dipole antenna markers may also include a non-linear element to reradiate a harmonic frequency of a transmitter frequency. Upstream and downstream transducers include dipole antennas that are matched to the impedance of the food slurry and a signal transmission cable by various impedance matching means including unbalanced feed to the antennas.

Modeling a glacial lake outburst flood process chain: the case of Lake Palcacocha and Huaraz, Peru

NASA Astrophysics Data System (ADS)

Somos-Valenzuela, Marcelo A.; Chisolm, Rachel E.; Rivas, Denny S.; Portocarrero, Cesar; McKinney, Daene C.

2016-07-01

One of the consequences of recent glacier recession in the Cordillera Blanca, Peru, is the risk of glacial lake outburst floods (GLOFs) from lakes that have formed at the base of retreating glaciers. GLOFs are often triggered by avalanches falling into glacial lakes, initiating a chain of processes that may culminate in significant inundation and destruction downstream. This paper presents simulations of all of the processes involved in a potential GLOF originating from Lake Palcacocha, the source of a previously catastrophic GLOF on 13 December 1941, killing about 1800 people in the city of Huaraz, Peru. The chain of processes simulated here includes (1) avalanches above the lake; (2) lake dynamics resulting from the avalanche impact, including wave generation, propagation, and run-up across lakes; (3) terminal moraine overtopping and dynamic moraine erosion simulations to determine the possibility of breaching; (4) flood propagation along downstream valleys; and (5) inundation of populated areas. The results of each process feed into simulations of subsequent processes in the chain, finally resulting in estimates of inundation in the city of Huaraz. The results of the inundation simulations were converted into flood intensity and preliminary hazard maps (based on an intensity-likelihood matrix) that may be useful for city planning and regulation. Three avalanche events with volumes ranging from 0.5 to 3 × 106 m3 were simulated, and two scenarios of 15 and 30 m lake lowering were simulated to assess the potential of mitigating the hazard level in Huaraz. For all three avalanche events, three-dimensional hydrodynamic models show large waves generated in the lake from the impact resulting in overtopping of the damming moraine. Despite very high discharge rates (up to 63.4 × 103 m3 s-1), the erosion from the overtopping wave did not result in failure of the damming moraine when simulated with a hydro-morphodynamic model using excessively conservative soil characteristics that provide very little erosion resistance. With the current lake level, all three avalanche events result in inundation in Huaraz due to wave overtopping, and the resulting preliminary hazard map shows a total affected area of 2.01 km2, most of which is in the high hazard category. Lowering the lake has the potential to reduce the affected area by up to 35 %, resulting in a smaller portion of the inundated area in the high hazard category.

Experimentally Isolating the Contributions of a Disturbed Ephemeral Drainage to a Headwater Stream in the Southern Appalachians

NASA Astrophysics Data System (ADS)

Gannon, J. P.; Lord, M.; Kinner, D. A.

2015-12-01

A growing body of evidence suggests contributions to runoff from ephemeral channels during events can exhibit significant control over water quality in higher order streams. Furthermore, field observations from a steep Appalachian catchment influenced by human activity suggest these disturbed ephemeral drainages exhibit significant control over turbidity, water temperature, and conductivity levels downstream. High turbidity during stormflow is a water quality problem in many areas of the Southern Appalachians. However, upland ephemeral channels are not included in the jurisdiction of the Clean Water Act. This offers little recourse if their contributions degrade the water quality of larger-scale streams and highlights the need for robust evidence of the potential impacts of ephemeral drainages. The aim of this research is to isolate the contribution of a disturbed ephemeral drainage by diverting its flow from the study stream network. Spatially and temporally distributed stream water samples taken during storms, when the channel is diverted or allowed to flow normally, will allow us to assess its contribution. In this poster, we present initial spatial and temporal streamwater chemistry and turbidity data as well as a detailed description of the stream network, study design, and diversion construction. We anticipate the findings of this study will be relevant to describing the environmental impact of disturbed ephemeral channels and to describing their potential influence on other water chemistry parameters downstream.

Murine natural killer immunoreceptors use distinct proximal signaling complexes to direct cell function

PubMed Central

May, Rebecca M.; Okumura, Mariko; Hsu, Chin-Jung; Bassiri, Hamid; Yang, Enjun; Rak, Gregory; Mace, Emily M.; Philip, Naomi H.; Zhang, Weiguo; Baumgart, Tobias; Orange, Jordan S.; Nichols, Kim E.

2013-01-01

Signaling pathways leading to natural killer (NK)–cell effector function are complex and incompletely understood. Here, we investigated the proximal signaling pathways downstream of the immunotyrosine-based activation motif (ITAM) bearing activating receptors. We found that the adaptor molecule SH2 domain-containing leukocyte protein of 76 kD (SLP-76) is recruited to microclusters at the plasma membrane in activated NK cells and that this is required for initiation of downstream signaling and multiple NK-cell effector functions in vitro and in vivo. Surprisingly, we found that 2 types of proximal signaling complexes involving SLP-76 were formed. In addition to the canonical membrane complex formed between SLP-76 and linker for activation of T cells (LAT) family members, a novel LAT family–independent SLP-76–dependent signaling pathway was identified. The LAT family–independent pathway involved the SH2 domain of SLP-76 and adhesion and degranulation-promoting adaptor protein (ADAP). Both the LAT family–dependent and ADAP-dependent pathway contributed to interferon-gamma production and cytotoxicity; however, they were not essential for other SLP-76–dependent events, including phosphorylation of AKT and extracellular signal–related kinase and cellular proliferation. These results demonstrate that NK cells possess an unexpected bifurcation of proximal ITAM-mediated signaling, each involving SLP-76 and contributing to optimal NK-cell function. PMID:23407547

Hydrogen sulfide as an oxygen sensor.

PubMed

Olson, Kenneth R

2015-02-10

Although oxygen (O2)-sensing cells and tissues have been known for decades, the identity of the O2-sensing mechanism has remained elusive. Evidence is accumulating that O2-dependent metabolism of hydrogen sulfide (H2S) is this enigmatic O2 sensor. The elucidation of biochemical pathways involved in H2S synthesis and metabolism have shown that reciprocal H2S/O2 interactions have been inexorably linked throughout eukaryotic evolution; there are multiple foci by which O2 controls H2S inactivation, and the effects of H2S on downstream signaling events are consistent with those activated by hypoxia. H2S-mediated O2 sensing has been demonstrated in a variety of O2-sensing tissues in vertebrate cardiovascular and respiratory systems, including smooth muscle in systemic and respiratory blood vessels and airways, carotid body, adrenal medulla, and other peripheral as well as central chemoreceptors. Information is now needed on the intracellular location and stoichometry of these signaling processes and how and which downstream effectors are activated by H2S and its metabolites. Development of specific inhibitors of H2S metabolism and effector activation as well as cellular organelle-targeted compounds that release H2S in a time- or environmentally controlled way will not only enhance our understanding of this signaling process but also provide direction for future therapeutic applications.

40 Gbps data acquisition system for NectarCAM

NASA Astrophysics Data System (ADS)

Hoffmann, Dirk; Houles, Julien; NectarCAM Team; CTA Consortium, the

2017-10-01

The Cherenkov Telescope Array (CTA) will be the next generation ground-based gamma-ray observatory. It will be made up of approximately 100 telescopes of three different sizes, from 4 to 23 meters in diameter. The previously presented prototype of a high speed data acquisition (DAQ) system for CTA (CHEP 2012, [6]) has become concrete within the NectarCAM project, one of the most challenging camera projects with very demanding needs for bandwidth of data handling. We designed a Linux-PC system able to concentrate and process without packet loss the 40 Gb/s average data rate coming from the 265 Front End Boards (FEB) through Gigabit Ethernet links, and to reduce data to fit the two ten-Gigabit Ethernet downstream links by external trigger decisions as well as custom tailored compression algorithms. Within the given constraints, we implemented de-randomisation of the event fragments received as relatively small UDP packets emitted by the FEB, using off-the-shelf equipment as required by the project and for an operation period of at least 30 years. We tested out-of-the-box interfaces and used original techniques to cope with these requirements, and set up a test bench with hundreds of synchronous Gigabit links in order to validate and tune the acquisition chain including downstream data logging based on zeroMQ and Google ProtocolBuffers [8].

Action and Traction: Cytoskeletal Control of Receptor Triggering at the Immunological Synapse

PubMed Central

Comrie, William A.; Burkhardt, Janis K.

2016-01-01

It is well known that F-actin dynamics drive the micron-scale cell shape changes required for migration and immunological synapse (IS) formation. In addition, recent evidence points to a more intimate role for the actin cytoskeleton in promoting T cell activation. Mechanotransduction, the conversion of mechanical input into intracellular biochemical changes, is thought to play a critical role in several aspects of immunoreceptor triggering and downstream signal transduction. Multiple molecules associated with signaling events at the IS have been shown to respond to physical force, including the TCR, costimulatory molecules, adhesion molecules, and several downstream adapters. In at least some cases, it is clear that the relevant forces are exerted by dynamics of the T cell actomyosin cytoskeleton. Interestingly, there is evidence that the cytoskeleton of the antigen-presenting cell also plays an active role in T cell activation, by countering the molecular forces exerted by the T cell at the IS. Since actin polymerization is itself driven by TCR and costimulatory signaling pathways, a complex relationship exists between actin dynamics and receptor activation. This review will focus on recent advances in our understanding of the mechanosensitive aspects of T cell activation, paying specific attention to how F-actin-directed forces applied from both sides of the IS fit into current models of receptor triggering and activation. PMID:27014258

Nekton community response to a large-scale Mississippi River discharge: Examining spatial and temporal response to river management

USGS Publications Warehouse

Piazza, Bryan P.; La Peyre, M.K.

2011-01-01

Freshwater flow is generally held to be one of the most influential factors affecting community structure and production in estuaries. In coastal Louisiana, the Caernarvon Freshwater Diversion (CFD) is managed to control freshwater discharge from the Mississippi River into Breton Sound basin. Operational since 1991, CFD has undergone several changes in management strategy including pulsed spring flooding, which was introduced in 2001. We used a 20-yr time series of fisheries-independent data to investigate how variation in freshwater inflow (i.e., pre- and post-CFD, and pre and post spring pulsing management) influences the downstream nekton community (abundance, diversity, and assemblage). Analyses of long-term data demonstrated that while there were effects from the CFD, they largely involved subtle changes in community structure. Spatially, effects were largely limited to the sites immediately downstream of the diversion and extended only occasionally to more down-estuary sites. Temporally, effects were 1) immediate (detected during spring diversion events) or 2) delayed (detected several months post-diversion). Analysis of river management found that pulsed spring-time inflow resulted in more significant changes in nekton assemblages, likely due to higher discharge rates that 1) increased marsh flooding, thus increasing marsh habitat accessibility for small resident marsh species, and 2) reduced salinity, possibly causing displacement of marine pelagic species down estuary. ?? 2010.

Nonmarket resource valuation in the postfire environment

Treesearch

David Calkin; Greg Jones; Kevin Hyde

2008-01-01

After the containment of large wildland fires, major onsite and downstream effects including lost soil productivity, watershed response, increased vulnerability to invasive weeds, and downstream sedimentation can cause threats to human life and property. Burned Area Emergency Response (BAER) teams are responsible for developing treatment plans to mitigate negative...

Inorganic phosphate uptake in unicellular eukaryotes.

PubMed

Dick, Claudia F; Dos-Santos, André L A; Meyer-Fernandes, José R

2014-07-01

Inorganic phosphate (Pi) is an essential nutrient for all organisms. The route of Pi utilization begins with Pi transport across the plasma membrane. Here, we analyzed the gene sequences and compared the biochemical profiles, including kinetic and modulator parameters, of Pi transporters in unicellular eukaryotes. The objective of this review is to evaluate the recent findings regarding Pi uptake mechanisms in microorganisms, such as the fungi Neurospora crassa and Saccharomyces cerevisiae and the parasite protozoans Trypanosoma cruzi, Trypanosoma rangeli, Leishmania infantum and Plasmodium falciparum. Pi uptake is the key step of Pi homeostasis and in the subsequent signaling event in eukaryotic microorganisms. Biochemical and structural studies are important for clarifying mechanisms of Pi homeostasis, as well as Pi sensor and downstream pathways, and raise possibilities for future studies in this field. Copyright © 2014 Elsevier B.V. All rights reserved.

mTORβ Splicing Isoform Promotes Cell Proliferation and Tumorigenesis*

PubMed Central

Panasyuk, Ganna; Nemazanyy, Ivan; Zhyvoloup, Aleksander; Filonenko, Valeriy; Davies, Derek; Robson, Mathew; Pedley, R. Barbara; Waterfield, Michael; Gout, Ivan

2009-01-01

The mTOR (mammalian target of rapamycin) promotes growth in response to nutrients and growth factors and is deregulated in numerous pathologies, including cancer. The mechanisms by which mTOR senses and regulates energy metabolism and cell growth are relatively well understood, whereas the molecular events underlining how it mediates survival and proliferation remain to be elucidated. Here, we describe the existence of the mTOR splicing isoform, TORβ, which, in contrast to the full-length protein (mTORα), has the potential to regulate the G1 phase of the cell cycle and to stimulate cell proliferation. mTORβ is an active protein kinase that mediates downstream signaling through complexing with Rictor and Raptor proteins. Remarkably, overexpression of mTORβ transforms immortal cells and is tumorigenic in nude mice and therefore could be a proto-oncogene. PMID:19726679

Scavenging of pollutant acid substances by Asian mineral dust particles - article no. L07816

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsumoto, J.; Takahashi, K.; Matsumi, Y.

2006-04-13

Uptakes of sulfate and nitrate onto Asian dust particles during transport from the Asian continent to the Pacific Ocean were analyzed by using a single-particle time-of-flight mass spectrometer. Observation was conducted at Tsukuba in Japan in the springtime of 2004. Sulfate-rich dust particles made their largest contribution during the 'dust event' in the middle of April 2004. As a result of detailed analysis including backward trajectory calculations, it was confirmed that sulfate components originating from coal combustion in the continent were internally mixed with dust particles. Even in the downstream of the outflow far from the continental coastline, significant contributionmore » of Asian dust to sulfate was observed. Asian dust plays critical roles as the carrier of sulfate over the Pacific Ocean.« less

Macroinvertebrate Community Response to the Elimination of Concentrated Feedlot Runoff to a Headwater Stream

NASA Astrophysics Data System (ADS)

Snitgen, J. L.; Moren, M. M.

2005-05-01

During rainfall and snow melt events, a first order, cold-water stream was receiving varying amounts of liquefied manure from a concentrated feed lot. Stream restoration efforts included the implementation of best management practices to prevent further discharge of the water/manure mixture to the stream. Physical, chemical and biological data were collected pre-construction and two years post-construction of the containment system at a fixed location downstream of the feedlot. Hilsenhoff Biotic Index scores improved significantly, from 6.79 or "Fairly Poor" before the installation of the manure containment system, to 5.28 or "Good" after the installation of the manure containment system. Taxa richness improved from 25 to 34 and the EPT score improved from 0 to 4. Key words: macroinvertebrate, community response, manure, feedlot runoff, stream restoration

Arc burst pattern analysis fault detection system

NASA Technical Reports Server (NTRS)

Russell, B. Don (Inventor); Aucoin, B. Michael (Inventor); Benner, Carl L. (Inventor)

1997-01-01

A method and apparatus are provided for detecting an arcing fault on a power line carrying a load current. Parameters indicative of power flow and possible fault events on the line, such as voltage and load current, are monitored and analyzed for an arc burst pattern exhibited by arcing faults in a power system. These arcing faults are detected by identifying bursts of each half-cycle of the fundamental current. Bursts occurring at or near a voltage peak indicate arcing on that phase. Once a faulted phase line is identified, a comparison of the current and voltage reveals whether the fault is located in a downstream direction of power flow toward customers, or upstream toward a generation station. If the fault is located downstream, the line is de-energized, and if located upstream, the line may remain energized to prevent unnecessary power outages.

Velocity-intermittency structure for wake flow of the pitched single wind turbine under different inflow conditions

NASA Astrophysics Data System (ADS)

Crist, Ryan; Cal, Raul Bayoan; Ali, Naseem; Rockel, Stanislav; Peinke, Joachim; Hoelling, Michael

2017-11-01

The velocity-intermittency quadrant method is used to characterize the flow structure of the wake flow in the boundary layer of a wind turbine array. Multifractal framework presents the intermittency as a pointwise Hölder exponent. A 3×3 wind turbine array tested experimentally provided a velocity signal at a 21×9 downstream location, measured via hot-wire anemometry. The results show a negative correlation between the velocity and the intermittency at the hub height and bottom tip, whereas the top tip regions show a positive correlation. Sweep and ejection based on the velocity and intermittency are dominant downstream from the rotor. The pointwise results reflect large-scale organization of the flow and velocity-intermittency events corresponding to a foreshortened recirculation region near the hub height and the bottom tip.

Using satellite images to monitor glacial-lake outburst floods: Lago Cachet Dos drainage, Chile

USGS Publications Warehouse

Friesen, Beverly A.; Cole, Christopher J.; Nimick, David A.; Wilson, Earl M.; Fahey, Mark J.; McGrath, Daniel J.; Leidich, Jonathan

2015-01-01

During 2008–2013, 14 GLOFs were released from Lago Cachet Dos and created environmental and safety concerns for downstream residents and to infrastructure. If GLOFs and the consequent headward erosion continue, the moraine that creates Lago Cachet Uno could be destabilized and breached, and the two lakes could merge. If the two lakes become connected, the volume of future GLOFs likely would be greater and thus cause longer and (or) more extensive flooding downstream. Additional GLOFs from Lago Cachet Dos are expected in the future, and continued environmental monitoring could provide an early warning system as well as scientific information that could increase our understanding of GLOFs and their consequences. GLOFs occur in glaciated areas around the world and remote sensing technologies can allow researchers to better understand—and potentially predict—future GLOF events.

Kinetics of Hydrogen Oxidation Downstream of Lean Propane and Hydrogen Flames

NASA Technical Reports Server (NTRS)

Fine, Burton

1961-01-01

The decay of hydrogen was measured downstream of lean, flat, premixed hydrogen and propane-air flames seated on cooled porous burners. Experimental variables included temperature, pressure, initial equivalence ratio and diluent. Sampling of burned gas was done through uncooled quartz orifice probes, and the analysis was based on gas chromatography. An approximate treatment of the data in which diffusion was neglected led to the following rate expression for the zone downstream of hydrogen flames d[H (sub 2)] divided by (d times t) equals 1.7 times 10 (sup 10) [H (sub 2)] (sup 3) divided by (sub 2) [O (sub 2)]e (sup (-8100 divided by RT)) moles per liters per second. On the basis of a rate expression of this form, the specific rate constant for the reaction downstream of hydrogen flames was about three times as great as that determined downstream of propane flames. This result was explained on the basis of the existence of a steady state between hydrogen and carbon monoxide in the burned gas downstream of propane flames.

Assessing downstream flood impacts due to a potential GLOF from Imja Tsho in Nepal

NASA Astrophysics Data System (ADS)

Somos-Valenzuela, M. A.; McKinney, D. C.; Byers, A. C.; Rounce, D. R.; Portocarrero, C.; Lamsal, D.

2015-03-01

Glacial-dominated areas pose unique challenges to downstream communities in adapting to recent and continuing global climate change, including increased threats of glacial lake outburst floods (GLOFs) that can increase risk due to flooding of downstream communities and cause substantial impacts on regional social, environmental and economic systems. The Imja glacial lake (or Imja Tsho) in Nepal, which has the potential to generate a GLOF, was studied using a two-dimensional debris-flow inundation model in order to evaluate the effectiveness of proposed measures to reduce possible flooding impacts to downstream communities by lowering the lake level. The results indicate that only minor flood impact reduction is achieved in the downstream community of Dingboche with modest (~3 m) lake lowering. Lowering the lake by 10 m shows a significant reduction in inundated area. However, lowering the lake by 20 m almost eliminates all flood impact at Dingboche. Further downstream at Phakding, the impact of the GLOF is significant and similar reductions in inundation are likely as a result of lake lowering.

Level II scour analysis for Bridge 46 (LINCTH00060046) on Town Highway 6, crossing the New Haven River, Lincoln, Vermont

USGS Publications Warehouse

Wild, Emily C.

1998-01-01

This report provides the results of a detailed Level II analysis of scour potential at structure LINCTH00060046 on Town Highway 6 crossing the New Haven River, Lincoln, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (FHWA, 1993). Results of a Level I scour investigation also are included in appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in appendix D. The site is in the Green Mountain section of the New England physiographic province in west-central Vermont. The 45.9-mi2 drainage area is in a predominantly suburban and forested basin. In the vicinity of the study site, the surface cover is forest upstream of the bridge. The downstream right overbank near the bridge is suburban with buildings, homes, lawns, and pavement (less than fifty percent). The downstream left overbank is brushland while the immediate banks have dense woody vegetation. In the study area, the New Haven River has an incised, sinuous channel with a slope of approximately 0.01 ft/ft, an average channel top width of 95 ft and an average bank height of 7 ft. The channel bed material ranges from sand to bedrock with a median grain size (D50) of 120.7 mm (0.396 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 13, 1996, indicated that the reach was stable. The Town Highway 34 crossing of the New Haven River is a 85-ft-long, two-lane bridge consisting of an 80-foot steel arch truss (Vermont Agency of Transportation, written communication, December 14, 1995). The opening length of the structure parallel to the bridge face is 69 feet. The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 25 degrees to the opening while the opening-skew-to-roadway is 5 degrees. A scour hole 2.0 ft deeper than the mean thalweg depth was observed in the downstream channel during the Level I assessment. Protection measures at the site include type-1 stone fill (less than 12 inches diameter) at the upstream left wingwall, type-2 stone fill (less than 36 inches diameter) at the downstream end of the downstream left wingwall, and type-3 stone fill (less than 48 inches diameter) at the upstream right wingwall and the downstream end of the downstream right wingwall. Additional details describing conditions at the site are included in the Level II Summary and appendices D and E. Scour depths and recommended rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and Davis, 1995). Total scour at a highway crossing is comprised of three components: 1) long-term streambed degradation; 2) contraction scour (due to accelerated flow caused by a reduction in flow area at a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute depths for contraction and local scour and a summary of the results of these computations follows. Contraction scour for all modelled flows ranged from 0.0 to 1.7 ft. The worst-case contraction scour occurred at the incipient roadway-overtopping discharge. Left abutment scour ranged from 12.9 to 17.8 ft. Right abutment scour ranged from 5.9 to 11.9 ft. The worst-case abutment scour occurred at the incipient roadway-overtopping discharge. Additional information on scour depths and depths to armoring are included in the section titled “Scour Results”. Scoured-streambed elevations, based on the calculated scour depths, are presented in tables 1 and 2. A cross-section of the scour computed at the bridge is presented in figure 8. Scour depths were calculated assuming an infinite depth of erosive material and a homogeneous particle-size distribution. It is generally accepted that the Froehlich equation (abutment scour) gives “excessively conservative estimates of scour depths” (Richardson and Davis, 1995, p. 47). Usually, computed scour depths are evaluated in combination with other information including (but not limited to) historical performance during flood events, the geomorphic stability assessment, existing scour protection measures, and the results of the hydraulic analyses. Therefore, scour depths adopted by VTAOT may differ from the computed values documented herein.

Examining the freezing process of an intermediate bulk containing an industrially relevant protein

PubMed Central

Reinsch, Holger; Spadiut, Oliver; Heidingsfelder, Johannes; Herwig, Christoph

2015-01-01

Numerous biopharmaceuticals are produced in recombinant microorganisms in the controlled environment of a bioreactor, a process known as Upstream Process. To minimize product loss due to physico-chemical and enzymatic degradation, the Upstream Process should be directly followed by product purification, known as Downstream Process. However, the Downstream Process can be technologically complex and time-consuming which is why Upstream and Downstream Process usually have to be decoupled temporally and spatially. Consequently, the product obtained after the Upstream Process, known as intermediate bulk, has to be stored. In those circumstances, a freezing procedure is often performed to prevent product loss. However, the freezing process itself is inseparably linked to physico-chemical changes of the intermediate bulk which may in turn damage the product. The present study analysed the behaviour of a Tris-buffered intermediate bulk containing a biopharmaceutically relevant protein during a bottle freezing process. Major damaging mechanisms, like the spatiotemporal redistribution of ion concentrations and pH, and their influence on product stability were investigated. Summarizing, we show the complex events which happen in an intermediate bulk during freezing and explain the different causes for product loss. PMID:25765305

Quantification of mutation-derived bias for alternate mating functionalities of the Saccharomyces cerevisiae Ste2p pheromone receptor.

PubMed

Choudhary, Pooja; Loewen, Michele C

2016-01-01

Although well documented for mammalian G-protein-coupled receptors, alternate functionalities and associated alternate signalling remain to be unequivocally established for the Saccharomyces cerevisiae pheromone Ste2p receptor. Here, evidence supporting alternate functionalities for Ste2p is re-evaluated, extended and quantified. In particular, strong mating and constitutive signalling mutations, focusing on residues S254, P258 and S259 in TM6 of Ste2p, are stacked and investigated in terms of their effects on classical G-protein-mediated signal transduction associated with cell cycle arrest, and alternatively, their impact on downstream mating projection and zygote formation events. In relative dose response experiments, accounting for systemic and observational bias, mutational-derived functional differences were observed, validating the S254L-derived bias for downstream mating responses and highlighting complex relationships between TM6-mutation derived constitutive signalling and ligand-induced functionalities. Mechanistically, localization studies suggest that alterations to receptor trafficking may contribute to mutational bias, in addition to expected receptor conformational stabilization effects. Overall, these results extend previous observations and quantify the contributions of Ste2p variants to mediating cell cycle arrest versus downstream mating functionalities. © Crown copyright 2015.

Method of and apparatus for testing the integrity of filters

DOEpatents

Herman, R.L.

1985-05-07

A method of and apparatus are disclosed for testing the integrity of individual filters or filter stages of a multistage filtering system including a diffuser permanently mounted upstream and/or downstream of the filter stage to be tested for generating pressure differentials to create sufficient turbulence for uniformly dispersing trace agent particles within the airstream upstream and downstream of such filter stage. Samples of the particle concentration are taken upstream and downstream of the filter stage for comparison to determine the extent of particle leakage past the filter stage. 5 figs.

Method of and apparatus for testing the integrity of filters

DOEpatents

Herman, Raymond L [Richland, WA

1985-01-01

A method of and apparatus for testing the integrity of individual filters or filter stages of a multistage filtering system including a diffuser permanently mounted upstream and/or downstream of the filter stage to be tested for generating pressure differentials to create sufficient turbulence for uniformly dispersing trace agent particles within the airstream upstream and downstream of such filter stage. Samples of the particle concentration are taken upstream and downstream of the filter stage for comparison to determine the extent of particle leakage past the filter stage.

Methods of and apparatus for testing the integrity of filters

DOEpatents

Herman, R.L.

1984-01-01

A method of and apparatus for testing the integrity of individual filters or filter stages of a multistage filtering system including a diffuser permanently mounted upstream and/or downstream of the filter stage to be tested for generating pressure differentials to create sufficient turbulence for uniformly dispersing trace agent particles within the airstram upstream and downstream of such filter stage. Samples of the particel concentration are taken upstream and downstream of the filter stage for comparison to determine the extent of particle leakage past the filter stage.

A hybrid deep neural network and physically based distributed model for river stage prediction

NASA Astrophysics Data System (ADS)

hitokoto, Masayuki; sakuraba, Masaaki

2016-04-01

We developed the real-time river stage prediction model, using the hybrid deep neural network and physically based distributed model. As the basic model, 4 layer feed-forward artificial neural network (ANN) was used. As a network training method, the deep learning technique was applied. To optimize the network weight, the stochastic gradient descent method based on the back propagation method was used. As a pre-training method, the denoising autoencoder was used. Input of the ANN model is hourly change of water level and hourly rainfall, output data is water level of downstream station. In general, the desirable input of the ANN has strong correlation with the output. In conceptual hydrological model such as tank model and storage-function model, river discharge is governed by the catchment storage. Therefore, the change of the catchment storage, downstream discharge subtracted from rainfall, can be the potent input candidate of the ANN model instead of rainfall. From this point of view, the hybrid deep neural network and physically based distributed model was developed. The prediction procedure of the hybrid model is as follows; first, downstream discharge was calculated by the distributed model, and then estimates the hourly change of catchment storage form rainfall and calculated discharge as the input of the ANN model, and finally the ANN model was calculated. In the training phase, hourly change of catchment storage can be calculated by the observed rainfall and discharge data. The developed model was applied to the one catchment of the OOYODO River, one of the first-grade river in Japan. The modeled catchment is 695 square km. For the training data, 5 water level gauging station and 14 rain-gauge station in the catchment was used. The training floods, superior 24 events, were selected during the period of 2005-2014. Prediction was made up to 6 hours, and 6 models were developed for each prediction time. To set the proper learning parameters and network architecture of the ANN model, sensitivity analysis was done by the case study approach. The prediction result was evaluated by the superior 4 flood events by the leave-one-out cross validation. The prediction result of the basic 4 layer ANN was better than the conventional 3 layer ANN model. However, the result did not reproduce well the biggest flood event, supposedly because the lack of the sufficient high-water level flood event in the training data. The result of the hybrid model outperforms the basic ANN model and distributed model, especially improved the performance of the basic ANN model in the biggest flood event.

Management Practices Used in Agricultural Drainage Ditches to Reduce Gulf of Mexico Hypoxia.

PubMed

Faust, Derek R; Kröger, Robert; Moore, Matthew T; Rush, Scott A

2018-01-01

Agricultural non-point sources of nutrients and sediments have caused eutrophication and other water quality issues in aquatic and marine ecosystems, such as the annual occurrence of hypoxia in the Gulf of Mexico. Management practices have been implemented adjacent to and in agricultural drainage ditches to promote their wetland characteristics and functions, including reduction of nitrogen, phosphorus, and sediment losses downstream. This review: (1) summarized studies examining changes in nutrient and total suspended solid concentrations and loads associated with management practices in drainage ditches (i.e., riser and slotted pipes, two-stage ditches, vegetated ditches, low-grade weirs, and organic carbon amendments) with emphasis on the Lower Mississippi Alluvial Valley, (2) quantified management system effects on nutrient and total suspended solid concentrations and loads and, (3) identified information gaps regarding water quality associated with these management practices and research needs in this area. In general, management practices used in drainage ditches at times reduced losses of total suspended solids, N, and P. However, management practices were often ineffective during storm events that were uncommon and intense in duration and volume, although these types of events could increase in frequency and intensity with climate change. Studies on combined effects of management practices on drainage ditch water quality, along with research towards improved nutrient and sediment reduction efficiency during intense storm events are urgently needed.

G-protein-coupled receptors signaling pathways in new antiplatelet drug development.

PubMed

Gurbel, Paul A; Kuliopulos, Athan; Tantry, Udaya S

2015-03-01

Platelet G-protein-coupled receptors influence platelet function by mediating the response to various agonists, including ADP, thromboxane A2, and thrombin. Blockade of the ADP receptor, P2Y12, in combination with cyclooxygenase-1 inhibition by aspirin has been among the most widely used pharmacological strategies to reduce cardiovascular event occurrence in high-risk patients. The latter dual pathway blockade strategy is one of the greatest advances in the field of cardiovascular medicine. In addition to P2Y12, the platelet thrombin receptor, protease activated receptor-1, has also been recently targeted for inhibition. Blockade of protease activated receptor-1 has been associated with reduced thrombotic event occurrence when added to a strategy using P2Y12 and cyclooxygenase-1 inhibition. At this time, the relative contributions of these G-protein-coupled receptor signaling pathways to in vivo thrombosis remain incompletely defined. The observation of treatment failure in ≈10% of high-risk patients treated with aspirin and potent P2Y12 inhibitors provides the rationale for targeting novel pathways mediating platelet function. Targeting intracellular signaling downstream from G-protein-coupled receptor receptors with phosphotidylionisitol 3-kinase and Gq inhibitors are among the novel strategies under investigation to prevent arterial ischemic event occurrence. Greater understanding of the mechanisms of G-protein-coupled receptor-mediated signaling may allow the tailoring of antiplatelet therapy. © 2015 American Heart Association, Inc.

Nitrate dynamics within a stream-lake network through time and space

NASA Astrophysics Data System (ADS)

Loken, L. C.; Crawford, J. T.; Childress, E. S.; Casson, N. J.; Stanley, E. H.

2014-12-01

Nitrate dynamics in streams are governed by biology, hydrology, and geomorphology, and the ability to parse these drivers apart has improved with the development of accurate high-frequency sensors. By combining a stationary Eulerian and a quasi-Lagrangian sensor platform, we investigated the timing of nitrate flushing and identified locations of elevated biogeochemical cycling along a stream-lake network in Northern Wisconsin, USA. Two years of continuous oxygen, carbon dioxide, and discharge measurements were used to compute gross primary production (GPP) and ecosystem respiration (ER) downstream of a wetland reach of Allequash Creek. Metabolic rates and flow patterns were compared with nitrate concentrations measured every 30 minutes using an optical sensor. Additionally, we floated a sensor array from the headwater spring ponds through a heterogeneous stream reach consisting of wetlands, beaver ponds, forested segments, and two lakes. Two distinct temporal patterns of stream nitrate concentrations were observed. During high flow events such as spring snowmelt and summer rain events, nitrate concentrations increased from ~5 μM (baseflow) to 12 μM, suggesting flushing from catchment sources. During baseflow conditions, nitrate followed a diel cycle with a 0.3-1.0 μM daytime draw down. Daily nitrate reduction was positively correlated with GPP calculated from oxygen and carbon dioxide records. Lastly, spatial analyses revealed lowest nitrate concentrations in the wetland reach, approximately 2-3 μM lower than the upstream spring ponds, and downstream lakes and forested reaches. This snapshot implies greater nitrate removal potential in the wetland reach likely driven by denitrification in organic rich sediments and macrophyte uptake in the open canopy stream segment. Taken together the temporal and spatial results show the dynamics of hydrology, geomorphology, and biology to influence nitrate delivery and variability in ecosystem processing through a stream-lake system. Future ecosystem studies could benefit by including multiple reference frameworks to better assess processes not captured by a single station approach.

The pam1 gene is required for meiotic bouquet formation and efficient homologous synapsis in maize (Zea mays L.).

PubMed Central

Golubovskaya, Inna N; Harper, Lisa C; Pawlowski, Wojciech P; Schichnes, Denise; Cande, W Zacheus

2002-01-01

The clustering of telomeres on the nuclear envelope (NE) during meiotic prophase to form the bouquet arrangement of chromosomes may facilitate homologous chromosome synapsis. The pam1 (plural abnormalities of meiosis 1) gene is the first maize gene that appears to be required for telomere clustering, and homologous synapsis is impaired in pam1. Telomere clustering on the NE is arrested or delayed at an intermediate stage in pam1. Telomeres associate with the NE during the leptotene-zygotene transition but cluster slowly if at all as meiosis proceeds. Intermediate stages in telomere clustering including miniclusters are observed in pam1 but not in wild-type meiocytes. The tight bouquet normally seen at zygotene is a rare event. In contrast, the polarization of centromeres vs. telomeres in the nucleus at the leptotene-zygotene transition is the same in mutant and wild-type cells. Defects in homologous chromosome synapsis include incomplete synapsis, nonhomologous synapsis, and unresolved interlocks. However, the number of RAD51 foci on chromosomes in pam1 is similar to that of wild type. We suggest that the defects in homologous synapsis and the retardation of prophase I arise from the irregularity of telomere clustering and propose that pam1 is involved in the control of bouquet formation and downstream meiotic prophase I events. PMID:12524364

Analysis of Geomorphic and Hydrologic Characteristics of Mount Jefferson Debris Flow, Oregon, November 6, 2006

USGS Publications Warehouse

Sobieszczyk, Steven; Uhrich, Mark A.; Piatt, David R.; Bragg, Heather M.

2008-01-01

On November 6, 2006, a rocky debris flow surged off the western slopes of Mount Jefferson into the drainage basins of Milk and Pamelia Creeks in Oregon. This debris flow was not a singular event, but rather a series of surges of both debris and flooding throughout the day. The event began during a severe storm that brought warm temperatures and heavy rainfall to the Pacific Northwest. Precipitation measurements near Mount Jefferson at Marion Forks and Santiam Junction showed that more than 16.1 centimeters of precipitation fell the week leading up to the event, including an additional 20.1 centimeters falling during the 2 days afterward. The flooding associated with the debris flow sent an estimated 15,500 to 21,000 metric tons, or 9,800 to 13,000 cubic meters, of suspended sediment downstream, increasing turbidity in the North Santiam River above Detroit Lake to an estimated 35,000 to 55,000 Formazin Nephelometric Units. The debris flow started small as rock and ice calved off an upper valley snowfield, but added volume as it eroded weakly consolidated deposits from previous debris flows, pyroclastic flows, and glacial moraines. Mud run-up markings on trees indicated that the flood stage of this event reached depths of at least 2.4 meters. Velocity calculations indicate that different surges of debris flow and flooding reached 3.9 meters per second. The debris flow reworked and deposited material ranging in size from sand to coarse boulders over a 0.1 square kilometer area, while flooding and scouring as much as 0.45 square kilometer. Based on cross-sectional transect measurements recreating pre-event topography and other field measurements, the total volume of the deposit ranged from 100,000 to 240,000 cubic meters.

Cell biology. ER-to-Golgi traffic--this bud's for you.

PubMed

Brittle, E E; Waters, M G

2000-07-21

How do protein-transporting vesicles, which bud from the endoplasmic reticulum (ER), specifically dock to, and fuse with, the Golgi apparatus? In their Perspective, Brittle and Waters discuss new work (Allan et al.) suggesting that some vesicle-associated docking and fusion proteins are "programmed" during vesicle budding from the ER and direct downstream events that occur during fusion of these transport vesicles with the membranes of the Golgi.

Aircraft and runway deicers at General Mitchell International Airport, Milwaukee, Wisconsin, USA. 1. Biochemical oxygen demand and dissolved oxygen in receiving streams.

PubMed

Corsi, S R; Booth, N L; Hall, D W

2001-07-01

Aircraft and runway deicers are used during cold weather at many of the world's airports to facilitate safe air travel. Propylene glycol-, ethylene glycol-, and urea-based deicers are known to have very high biochemical oxygen demand. At General Mitchell International Airport (GMIA) in Milwaukee, Wisconsin, USA, deicer application, water chemistry, and dissolved oxygen (DO) data were collected for two deicing seasons in order to evaluate and define premanagement water quality parameters prior to the implementation of a glycol management program. Calculations using stream-monitoring data during a controlled release of deicer provided an estimate of 0.8/d for the first-order decay rate constant, substantially higher than published laboratory test results. For eight precipitation events with deicing activities, between 2.4 and 99% of propylene and ethylene glycol applied to aircraft was delivered directly to receiving streams. The percentage of glycol runoff during an event increased with increasing storm-flow volume. Elevated concentrations of glycol and biochemical oxygen demand were measured downstream from the airport. However, the frequency of low DO concentrations in the receiving streams is comparable with that at an upstream reference site. This is possibly due to slowed bacteria metabolism at low water temperatures, short travel times, and dilution from downstream tributaries.

Role of Modulator of Inflammation Cyclooxygenase-2 in Gammaherpesvirus Mediated Tumorigenesis

PubMed Central

Gandhi, Jaya; Khera, Lohit; Gaur, Nivedita; Paul, Catherine; Kaul, Rajeev

2017-01-01

Chronic inflammation is recognized as a threat factor for cancer progression. Release of inflammatory molecules generates microenvironment which is highly favorable for development of tumor, cancer progression and metastasis. In cases of latent viral infections, generation of such a microenvironment is one of the major predisposing factors related to virus mediated tumorigenesis. Among various inflammatory mediators implicated in pathological process associated with cancer, the cyclooxygenase (COX) and its downstream effector molecules are of greater significance. Though the role of infectious agents in causing inflammation leading to transformation of cells has been more or less well established, however, the mechanism by which inflammation in itself modulates the events in life cycle of infectious agent is not very much clear. This is specifically important for gammaherpesviruses infections where viral life cycle is characterized by prolonged periods of latency when the virus remains hidden, immunologically undetectable and expresses only a very limited set of genes. Therefore, it is important to understand the mechanisms for role of inflammation in virus life cycle and tumorigenesis. This review is an attempt to summarize the latest findings highlighting the significance of COX-2 and its downstream signaling effectors role in life cycle events of gammaherpesviruses leading to progression of cancer. PMID:28400769

Reduction of solids and nutrient loss from agricultural land by tailwater recovery systems

USGS Publications Warehouse

Omer, A.R.; Miranda, Leandro E.; Moore, M. T.; Krutz, L. J.; Prince Czarnecki, J. M.; Kröger, R.; Baker, B. H.; Hogue, J.; Allen, P. J.

2018-01-01

Best management practices are being implemented throughout the Lower Mississippi River Alluvial Valley with the aim of alleviating pressures placed on downstream aquatic systems by sediment and nutrient losses from agricultural land; however, research evaluating the performance of tailwater recovery (TWR) systems, an increasingly important practice, is limited. This study evaluated the ability of TWR systems to retain sediment and nutrients draining from agricultural landscapes. Composite flow-based samples were collected during flow events (precipitation or irrigation) over a two-year period in six TWR systems. Performance was evaluated by comparing concentrations and loads in water entering TWR systems (i.e., runoff or influent) from agricultural fields to water overflow exiting TWR systems (effluent). Tailwater recovery systems did not reduce concentrations of solids and nutrients, but did reduce loads of solids, phosphorus (P), and nitrogen (N) by 43%, 32%, and 44%, respectively. Annual mean load reductions were 1,142 kg solids, 0.7 kg of P, and 3.8 kg of N. Performance of TWR systems was influenced by effluent volume, system fullness, time since the previous event, and capacity of the TWR system. Mechanistically, TWR systems retain runoff on the agricultural landscape, thereby reducing the amount of sediment and nutrients entering downstream waterbodies. System performance can be improved through manipulation of influential parameters.

Impact of sea level rise on tide gate function.

PubMed

Walsh, Sean; Miskewitz, Robert

2013-01-01

Sea level rise resulting from climate change and land subsidence is expected to severely impact the duration and associated damage resulting from flooding events in tidal communities. These communities must continuously invest resources for the maintenance of existing structures and installation of new flood prevention infrastructure. Tide gates are a common flood prevention structure for low-lying communities in the tidal zone. Tide gates close during incoming tides to prevent inundation from downstream water propagating inland and open during outgoing tides to drain upland areas. Higher downstream mean sea level elevations reduce the effectiveness of tide gates by impacting the hydraulics of the system. This project developed a HEC-RAS and HEC-HMS model of an existing tide gate structure and its upland drainage area in the New Jersey Meadowlands to simulate the impact of rising mean sea level elevations on the tide gate's ability to prevent upstream flooding. Model predictions indicate that sea level rise will reduce the tide gate effectiveness resulting in longer lasting and deeper flood events. The results indicate that there is a critical point in the sea level elevation for this local area, beyond which flooding scenarios become dramatically worse and would have a significantly negative impact on the standard of living and ability to do business in one of the most densely populated areas of America.

Aircraft and runway deicers at General Mitchell International Airport, Milwaukee, Wisconsin, USA. 1. Biochemical oxygen demand and dissolved oxygen in receiving streams

USGS Publications Warehouse

Corsi, S.R.; Booth, N.L.; Hall, D.W.

2001-01-01

Aircraft and runway deicers are used during cold weather at many of the world's airports to facilitate safe air travel. Propylene glycol-, ethylene glycol-, and urea-based deicers are known to have very high biochemical oxygen demand. At General Mitchell International Airport (GMIA) in Milwaukee, Wisconsin, USA, deicer application, water chemistry, and dissolved oxygen (DO) data were collected for two deicing seasons in order to evaluate and define premanagement water quality parameters prior to the implementation of a glycol management program. Calculations using stream-monitoring data during a controlled release of deicer provided an estimate of 0.8/d for the first-order decay rate constant, substantially higher than published laboratory test results. For eight precipitation events with deicing activities, between 2.4 and 99% of propylene and ethylene glycol applied to aircraft was delivered directly to receiving streams. The percentage of glycol runoff during an event increased with increasing storm-flow volume. Elevated concentrations of glycol and biochemical oxygen demand were measured downstream from the airport. However, the frequency of low DO concentrations in the receiving streams is comparable with that at an upstream reference site. This is possibly due to slowed bacteria metabolism at low water temperatures, short travel times, and dilution from downstream tributaries.

Contributions of human activities to suspended-sediment yield during storm events from a steep, small, tropical watershed, American Samoa

NASA Astrophysics Data System (ADS)

Messina, A. T.; Biggs, T. W.

2014-12-01

Anthropogenic watershed disturbance by agriculture, deforestation, roads, and urbanization can alter the timing, composition, and mass of sediment loads to adjacent coral reefs, causing enhanced sediment stress on corals near the outlets of impacted watersheds like Faga'alu, American Samoa. To quantify the increase in sediment loading to the adjacent priority coral reef experiencing sedimentation stress, suspended-sediment yield (SSY) from undisturbed and human-disturbed portions of a small, steep, tropical watershed was measured during baseflow and storm events of varying magnitude. Data on precipitation, discharge, turbidity, and suspended-sediment concentration (SSC) were collected over three field campaigns and continuous monitoring from January 2012 to March 2014, which included 88 storm events. A combination of paired- and nested-watershed study designs using sediment budget, disturbance ratio, and sediment rating curve methodologies was used to quantify the contribution of human-disturbed areas to total SSY. SSC during base- and stormflows was significantly higher downstream of an open-pit aggregate quarry, indicating the quarry is a key sediment source requiring sediment discharge mitigation. Comparison of event-wise SSY from the upper, undisturbed watershed, and the lower, human-disturbed watershed showed the Lower watershed accounted for more than 80% of total SSY on average, and human activities have increased total sediment loading to the coast by approximately 200%. Four storm characteristics were tested as predictors of event SSY using Pearson's and Spearman's correlation coefficients. Similar to mountainous watersheds in semi-arid and temperate watersheds, SSY from both the undisturbed and disturbed watersheds had the highest correlation with event maximum discharge, Qmax (Pearson's R=0.88 and 0.86 respectively), and were best fit by a power law relationship. The resulting model of event-SSY from Faga'alu is being incorporated as part of a larger project investigating relationships and interactions between terrigenous sediment, water circulation over the reef, and the spatial distribution of sediment accumulation under various conditions in a linked watershed and fringing-reef embayment.

A combined morphometric, sedimentary, GIS and modelling analysis of flooding and debris flow hazard on a composite alluvial fan, Caveside, Tasmania

NASA Astrophysics Data System (ADS)

Kain, Claire L.; Rigby, Edward H.; Mazengarb, Colin

2018-02-01

Two episodes of intense flooding and sediment movement occurred in the Westmorland Stream alluvial system near Caveside, Australia in January 2011 and June 2016. The events were investigated in order to better understand the drivers and functioning of this composite alluvial system on a larger scale, so as to provide awareness of the potential hazard from future flood and debris flow events. A novel combination of methods was employed, including field surveys, catchment morphometry, GIS mapping from LiDAR and aerial imagery, and hydraulic modelling using RiverFlow-2D software. Both events were initiated by extreme rainfall events (< 1% Annual Exceedance Probability for durations exceeding 6 h) and resulted in flooding and sediment deposition across the alluvial fan. The impacts of the 2011 and 2016 events on the farmland appeared similar; however, there were differences in sediment source and transport processes that have implications for understanding recurrence probabilities. A debris flow was a key driver in the 2011 event, by eroding the stream channel in the forested watershed and delivering a large volume of sediment downstream to the alluvial fan. In contrast, modelled flooding velocities suggest the impacts of the 2016 event were the result of an extended period of extreme stream flooding and consequent erosion of alluvium directly above the current fan apex. The morphometry of the catchment is better aligned with values from fluvially dominated fans found elsewhere, which suggests that flooding represents a more frequent future risk than debris flows. These findings have wider implications for the estimation of debris flow and flood hazard on alluvial fans in Tasmania and elsewhere, as well as further demonstrating the capacity of combined hydraulic modelling and geomorphologic investigation as a predictive tool to inform hazard management practices in environments affected by flooding and sediment movement.

European downstream oil industry safety performance : statistical summary of reported incidents, 1997 and overview 1993 to 1997

DOT National Transportation Integrated Search

1998-10-01

This report is the fourth by CONCAWE reviewing the safety performance of the downstream ol industry in Western Europe. It includes the results of 27 companies which together represent over 90% of the oil refining capacity in the region. Of the 27 com...

77 FR 53905 - Notice of Filing of Plats of Survey; Montana

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-04

... original meanders of the former left bank of the Missouri River, downstream, through section [[Page 53906... present left bank of the Missouri River, downstream, through sections 29 and 30 and certain division of... final, including decisions or appeals. Authority: 43 U.S.C. Chap. 3. Steve L. Toth, Acting Chief...

Spatial and temporal variability of water salinity in an ephemeral, arid-zone river, central Australia

NASA Astrophysics Data System (ADS)

Costelloe, Justin F.; Grayson, Rodger B.; McMahon, Thomas A.; Argent, Robert M.

2005-10-01

This study describes the spatial and temporal variability of water salinity of the Neales-Peake, an ephemeral river system in the arid Lake Eyre basin of central Australia. Saline to hypersaline waterholes occur in the lower reaches of the Neales-Peake catchment and lie downstream of subcatchments containing artesian mound springs. Flood pulses are fresh in the upper reaches of the rivers (<200 mg l-1). In the salt-affected reaches, flood pulses become increasingly saline during their recession. It is hypothesized that leakage from the Great Artesian Basin deposits salt at the surface. This salt is then transported by infrequent runoff events into the main river system over long periods of time. The bank/floodplain store downstream of salt-affected catchments contains high salt concentrations, and this salt is mobilized during the flow recession when bank/floodplain storage discharges into the channel. The salinity of the recession increases as the percentage of flow derived from this storage increases. A simple conceptual model was developed for investigating the salt movement processes during flow events. The model structure for transport of water and salt in the Neales-Peake catchment generated similar spatial and temporal patterns of salt distribution in the floodplain/bank storage and water flow as observed during flow events in 2000-02. However, more field-data collection and modelling are required for improved calibration and description of salt transport and storage processes, particularly with regard to the number of stores required to represent the salt distribution in the upper zone of the soil profile.

A coupled modelling effort to study the fate of contaminated sediments downstream of the Coles Hill deposit, Virginia, USA

NASA Astrophysics Data System (ADS)

Castro-Bolinaga, C. F.; Zavaleta, E. R.; Diplas, P.

2015-03-01

This paper presents the preliminary results of a coupled modelling effort to study the fate of tailings (radioactive waste-by product) downstream of the Coles Hill uranium deposit located in Virginia, USA. The implementation of the overall modelling process includes a one-dimensional hydraulic model to qualitatively characterize the sediment transport process under severe flooding conditions downstream of the potential mining site, a two-dimensional ANSYS Fluent model to simulate the release of tailings from a containment cell located partially above the local ground surface into the nearby streams, and a one-dimensional finite-volume sediment transport model to examine the propagation of a tailings sediment pulse in the river network located downstream. The findings of this investigation aim to assist in estimating the potential impacts that tailings would have if they were transported into rivers and reservoirs located downstream of the Coles Hill deposit that serve as municipal drinking water supplies.

Feeding by whiteflies suppresses downstream jasmonic acid signaling by eliciting salicylic acid signaling.

PubMed

Zhang, Peng-Jun; Li, Wei-Di; Huang, Fang; Zhang, Jin-Ming; Xu, Fang-Cheng; Lu, Yao-Bin

2013-05-01

Phloem-feeding whiteflies in the species complex Bemisia tabaci cause extensive crop damage worldwide. One of the reasons for their "success" is their ability to suppress the effectual jasmonic acid (JA) defenses of the host plant. However, little is understood about the mechanisms underlying whitefly suppression of JA-regulated defenses. Here, we showed that the expression of salicylic acid (SA)-responsive genes (EDS1 and PR1) in Arabidopsis thaliana was significantly enhanced during feeding by whitefly nymphs. Whereas upstream JA-responsive genes (LOX2 and OPR3) also were induced, the downstream JA-responsive gene (VSP1) was repressed, i.e., whiteflies only suppressed downstream JA signaling. Gene-expression analyses with various Arabidopsis mutants, including NahG, npr-1, ein2-1, and dde2-2, revealed that SA signaling plays a key role in the suppression of downstream JA defenses by whitefly feeding. Assays confirmed that SA activation enhanced whitefly performance by suppressing downstream JA defenses.

Turbine and method for reducing shock losses in a turbine

DOEpatents

Ristau, Neil

2015-09-01

A turbine includes a rotor and a casing that circumferentially surrounds at least a portion of the rotor. The rotor and the casing at least partially define a gas path through the turbine. A last stage of rotating blades is circumferentially arranged around the rotor and includes a downstream swept portion radially outward from the rotor. A method for reducing shock losses in a turbine includes removing a last stage of rotating blades circumferentially arranged around a rotor and replacing the last stage of rotating blades with rotating blades having a downstream swept portion radially outward from the rotor.

Distribution and solar wind control of compressional solar wind-magnetic anomaly interactions observed at the Moon by ARTEMIS

NASA Astrophysics Data System (ADS)

Halekas, J. S.; Poppe, A. R.; Lue, C.; Farrell, W. M.; McFadden, J. P.

2017-06-01

A statistical investigation of 5 years of observations from the two-probe Acceleration, Reconnection, Turbulence, and Electrodynamics of Moon's Interaction with the Sun (ARTEMIS) mission reveals that strong compressional interactions occur infrequently at high altitudes near the ecliptic but can form in a wide range of solar wind conditions and can occur up to two lunar radii downstream from the lunar limb. The compressional events, some of which may represent small-scale collisionless shocks ("limb shocks"), occur in both steady and variable interplanetary magnetic field (IMF) conditions, with those forming in steady IMF well organized by the location of lunar remanent crustal magnetization. The events observed by ARTEMIS have similarities to ion foreshock phenomena, and those observed in variable IMF conditions may result from either local lunar interactions or distant terrestrial foreshock interactions. Observed velocity deflections associated with compressional events are always outward from the lunar wake, regardless of location and solar wind conditions. However, events for which the observed velocity deflection is parallel to the upstream motional electric field form in distinctly different solar wind conditions and locations than events with antiparallel deflections. Consideration of the momentum transfer between incoming and reflected solar wind populations helps explain the observed characteristics of the different groups of events.