The initial value problem in Lagrangian drift kinetic theory

NASA Astrophysics Data System (ADS)

Burby, J. W.

2016-06-01

> Existing high-order variational drift kinetic theories contain unphysical rapidly varying modes that are not seen at low orders. These unphysical modes, which may be rapidly oscillating, damped or growing, are ushered in by a failure of conventional high-order drift kinetic theory to preserve the structure of its parent model's initial value problem. In short, the (infinite dimensional) system phase space is unphysically enlarged in conventional high-order variational drift kinetic theory. I present an alternative, `renormalized' variational approach to drift kinetic theory that manifestly respects the parent model's initial value problem. The basic philosophy underlying this alternate approach is that high-order drift kinetic theory ought to be derived by truncating the all-orders system phase-space Lagrangian instead of the usual `field particle' Lagrangian. For the sake of clarity, this story is told first through the lens of a finite-dimensional toy model of high-order variational drift kinetics; the analogous full-on drift kinetic story is discussed subsequently. The renormalized drift kinetic system, while variational and just as formally accurate as conventional formulations, does not support the troublesome rapidly varying modes.

Temporal genetic structure in a poecilogonous polychaete: the interplay of developmental mode and environmental stochasticity

PubMed Central

2014-01-01

Background Temporal variation in the genetic structure of populations can be caused by multiple factors, including natural selection, stochastic environmental variation, migration, or genetic drift. In benthic marine species, the developmental mode of larvae may indicate a possibility for temporal genetic variation: species with dispersive planktonic larvae are expected to be more likely to show temporal genetic variation than species with benthic or brooded non-dispersive larvae, due to differences in larval mortality and dispersal ability. We examined temporal genetic structure in populations of Pygospio elegans, a poecilogonous polychaete with within-species variation in developmental mode. P. elegans produces either planktonic, benthic, or intermediate larvae, varying both among and within populations, providing a within-species test of the generality of a relationship between temporal genetic variation and larval developmental mode. Results In contrast to our expectations, our microsatellite analyses of P. elegans revealed temporal genetic stability in the UK population with planktonic larvae, whereas there was variation indicative of drift in temporal samples of the populations from the Baltic Sea, which have predominantly benthic and intermediate larvae. We also detected temporal variation in relatedness within these populations. A large temporal shift in genetic structure was detected in a population from the Netherlands, having multiple developmental modes. This shift could have been caused by local extiction due to extreme environmental conditions and (re)colonization by planktonic larvae from neighboring populations. Conclusions In our study of P. elegans, temporal genetic variation appears to be due to not only larval developmental mode, but also the stochastic environment of adults. Large temporal genetic shifts may be more likely in marine intertidal habitats (e.g. North Sea and Wadden Sea) which are more prone to environmental stochasticity than the sub-tidal Baltic habitats. Sub-tidal and/or brackish (less saline) habitats may support smaller P. elegans populations and these may be more susceptible to the effects of random genetic drift. Moreover, higher frequencies of asexual reproduction and the benthic larval developmental mode in these populations leads to higher relatedness and contributes to drift. Our results indicate that a general relationship between larval developmental mode and temporal genetic variation may not exist. PMID:24447386

Temporal genetic structure in a poecilogonous polychaete: the interplay of developmental mode and environmental stochasticity.

PubMed

Kesäniemi, Jenni E; Mustonen, Marina; Boström, Christoffer; Hansen, Benni W; Knott, K Emily

2014-01-22

Temporal variation in the genetic structure of populations can be caused by multiple factors, including natural selection, stochastic environmental variation, migration, or genetic drift. In benthic marine species, the developmental mode of larvae may indicate a possibility for temporal genetic variation: species with dispersive planktonic larvae are expected to be more likely to show temporal genetic variation than species with benthic or brooded non-dispersive larvae, due to differences in larval mortality and dispersal ability. We examined temporal genetic structure in populations of Pygospio elegans, a poecilogonous polychaete with within-species variation in developmental mode. P. elegans produces either planktonic, benthic, or intermediate larvae, varying both among and within populations, providing a within-species test of the generality of a relationship between temporal genetic variation and larval developmental mode. In contrast to our expectations, our microsatellite analyses of P. elegans revealed temporal genetic stability in the UK population with planktonic larvae, whereas there was variation indicative of drift in temporal samples of the populations from the Baltic Sea, which have predominantly benthic and intermediate larvae. We also detected temporal variation in relatedness within these populations. A large temporal shift in genetic structure was detected in a population from the Netherlands, having multiple developmental modes. This shift could have been caused by local extiction due to extreme environmental conditions and (re)colonization by planktonic larvae from neighboring populations. In our study of P. elegans, temporal genetic variation appears to be due to not only larval developmental mode, but also the stochastic environment of adults. Large temporal genetic shifts may be more likely in marine intertidal habitats (e.g. North Sea and Wadden Sea) which are more prone to environmental stochasticity than the sub-tidal Baltic habitats. Sub-tidal and/or brackish (less saline) habitats may support smaller P. elegans populations and these may be more susceptible to the effects of random genetic drift. Moreover, higher frequencies of asexual reproduction and the benthic larval developmental mode in these populations leads to higher relatedness and contributes to drift. Our results indicate that a general relationship between larval developmental mode and temporal genetic variation may not exist.

Gravitational dynamos and the low-frequency geomagnetic secular variation.

PubMed

Olson, P

2007-12-18

Self-sustaining numerical dynamos are used to infer the sources of low-frequency secular variation of the geomagnetic field. Gravitational dynamo models powered by compositional convection in an electrically conducting, rotating fluid shell exhibit several regimes of magnetic field behavior with an increasing Rayleigh number of the convection, including nearly steady dipoles, chaotic nonreversing dipoles, and chaotic reversing dipoles. The time average dipole strength and dipolarity of the magnetic field decrease, whereas the dipole variability, average dipole tilt angle, and frequency of polarity reversals increase with Rayleigh number. Chaotic gravitational dynamos have large-amplitude dipole secular variation with maximum power at frequencies corresponding to a few cycles per million years on Earth. Their external magnetic field structure, dipole statistics, low-frequency power spectra, and polarity reversal frequency are comparable to the geomagnetic field. The magnetic variability is driven by the Lorentz force and is characterized by an inverse correlation between dynamo magnetic and kinetic energy fluctuations. A constant energy dissipation theory accounts for this inverse energy correlation, which is shown to produce conditions favorable for dipole drift, polarity reversals, and excursions.

Gravitational dynamos and the low-frequency geomagnetic secular variation

PubMed Central

Olson, P.

2007-01-01

Self-sustaining numerical dynamos are used to infer the sources of low-frequency secular variation of the geomagnetic field. Gravitational dynamo models powered by compositional convection in an electrically conducting, rotating fluid shell exhibit several regimes of magnetic field behavior with an increasing Rayleigh number of the convection, including nearly steady dipoles, chaotic nonreversing dipoles, and chaotic reversing dipoles. The time average dipole strength and dipolarity of the magnetic field decrease, whereas the dipole variability, average dipole tilt angle, and frequency of polarity reversals increase with Rayleigh number. Chaotic gravitational dynamos have large-amplitude dipole secular variation with maximum power at frequencies corresponding to a few cycles per million years on Earth. Their external magnetic field structure, dipole statistics, low-frequency power spectra, and polarity reversal frequency are comparable to the geomagnetic field. The magnetic variability is driven by the Lorentz force and is characterized by an inverse correlation between dynamo magnetic and kinetic energy fluctuations. A constant energy dissipation theory accounts for this inverse energy correlation, which is shown to produce conditions favorable for dipole drift, polarity reversals, and excursions. PMID:18048345

Foundational errors in the Neutral and Nearly-Neutral theories of evolution in relation to the Synthetic Theory: is a new evolutionary paradigm necessary?

PubMed

Valenzuela, Carlos Y

2013-01-01

The Neutral Theory of Evolution (NTE) proposes mutation and random genetic drift as the most important evolutionary factors. The most conspicuous feature of evolution is the genomic stability during paleontological eras and lack of variation among taxa; 98% or more of nucleotide sites are monomorphic within a species. NTE explains this homology by random fixation of neutral bases and negative selection (purifying selection) that does not contribute either to evolution or polymorphisms. Purifying selection is insufficient to account for this evolutionary feature and the Nearly-Neutral Theory of Evolution (N-NTE) included negative selection with coefficients as low as mutation rate. These NTE and N-NTE propositions are thermodynamically (tendency to random distributions, second law), biotically (recurrent mutation), logically and mathematically (resilient equilibria instead of fixation by drift) untenable. Recurrent forward and backward mutation and random fluctuations of base frequencies alone in a site make life organization and fixations impossible. Drift is not a directional evolutionary factor, but a directional tendency of matter-energy processes (second law) which threatens the biotic organization. Drift cannot drive evolution. In a site, the mutation rates among bases and selection coefficients determine the resilient equilibrium frequency of bases that genetic drift cannot change. The expected neutral random interaction among nucleotides is zero; however, huge interactions and periodicities were found between bases of dinucleotides separated by 1, 2... and more than 1,000 sites. Every base is co-adapted with the whole genome. Neutralists found that neutral evolution is independent of population size (N); thus neutral evolution should be independent of drift, because drift effect is dependent upon N. Also, chromosome size and shape as well as protein size are far from random.

Finite Difference modeling of VLF Propagation in the Earth-Ionosphere Waveguide

NASA Astrophysics Data System (ADS)

Marshall, R. A.; Wallace, T.; Turbe, M.

2016-12-01

Very-low-frequency (VLF, 3—30 kHz) waves can propagate efficiently in the waveguide formed by the Earth and the D-region ionosphere. vVariation in the signals monitored by a stationary receiver can be attributed to variations in the lower ionosphere. As such, these signals are used to monitor the D-region ionosphere in daytime and nighttime. However, the use of VLF transmitter signals to quantitatively diagnose the D-region ionosphere is complicated by i) the propagation of many modes in the waveguide, and their interference, and ii) the effect of the ionosphere along the entire path on the receiver signal at a single location. In this paper, we compare the modeled phase and amplitude of VLF signals using three methods: a Finite-Difference Time-Domain (FDTD) model, a Finite-Difference Frequency-Domain (FDFD) model, and the Long-Wave Prediction Capability (LWPC) model, which has been the method de rigueur since the 1970s. While LWPC solves mode propagation and coupling in the anisotropic waveguide, the FD methods directly solve for electric and magnetic fields from Maxwell's equations on a finite-difference grid. Thus, FD methods provide greater freedom to vary the physical inputs of the model, limited only by the spatial resolution, but at the expense of computation time. We compare the simulated amplitude and phase of these models by running them with identical physical inputs. In this work we compare both i) the absolute amplitude and phase trends as a function of distance, and ii) the magnitude of amplitude and phase variations for given ionosphere changes. Modeling results show that FDTD and FDFD simulations track the amplitude and phase as a function of distance very closely when compared to LWPC. Phase drift due to numerical dispersion is observed at large distances, of a few tens of degrees per 1000 km. These phase drifts increase quadratically with frequency, as expected from numerical dispersion in FD methods. In fact, the phase drift can be mostly removed by applying a simple Richardson extrapolation. After extrapolating, FDTD and LWPC differences can be mapped to a phase velocity difference of <0.07%. When we compare phase changes due to ionospheric variations (Figure 1), we find that all three models show similar magnitudes of phase changes, to within 20%, and similar trends with frequency.­­­

The interplay between local ecology, divergent selection, and genetic drift in population divergence of a sexually antagonistic female trait.

PubMed

Green, Kristina Karlsson; Svensson, Erik I; Bergsten, Johannes; Härdling, Roger; Hansson, Bengt

2014-07-01

Genetically polymorphic species offer the possibility to study maintenance of genetic variation and the potential role for genetic drift in population divergence. Indirect inference of the selection regimes operating on polymorphic traits can be achieved by comparing population divergence in neutral genetic markers with population divergence in trait frequencies. Such an approach could further be combined with ecological data to better understand agents of selection. Here, we infer the selective regimes acting on a polymorphic mating trait in an insect group; the dorsal structures (either rough or smooth) of female diving beetles. Our recent work suggests that the rough structures have a sexually antagonistic function in reducing male mating attempts. For two species (Dytiscus lapponicus and Graphoderus zonatus), we could not reject genetic drift as an explanation for population divergence in morph frequencies, whereas for the third (Hygrotus impressopunctatus) we found that divergent selection pulls morph frequencies apart across populations. Furthermore, population morph frequencies in H. impressopunctatus were significantly related to local bioclimatic factors, providing an additional line of evidence for local adaptation in this species. These data, therefore, suggest that local ecological factors and sexual conflict interact over larger spatial scales to shape population divergence in the polymorphism. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

The Effects of Both Recent and Long-Term Selection and Genetic Drift Are Readily Evident in North American Barley Breeding Populations

PubMed Central

Poets, Ana M.; Mohammadi, Mohsen; Seth, Kiran; Wang, Hongyun; Kono, Thomas J. Y.; Fang, Zhou; Muehlbauer, Gary J.; Smith, Kevin P.; Morrell, Peter L.

2015-01-01

Barley was introduced to North America ∼400 yr ago but adaptation to modern production environments is more recent. Comparisons of allele frequencies among growth habits and spike (inflorescence) types in North America indicate that significant genetic differentiation has accumulated in a relatively short evolutionary time span. Allele frequency differentiation is greatest among barley with two-row vs. six-row spikes, followed by spring vs. winter growth habit. Large changes in allele frequency among breeding programs suggest a major contribution of genetic drift and linked selection on genetic variation. Despite this, comparisons of 3613 modern North American cultivated barley breeding lines that differ for spike-type and growth habit permit the discovery of 142 single nucleotide polymorphism (SNP) outliers putatively linked to targets of selection. For example, SNPs within the Cbf4, Ppd-H1, and Vrn-H1 loci, which have previously been associated with agronomically adaptive phenotypes, are identified as outliers. Analysis of extended haplotype sharing identifies genomic regions shared within and among breeding populations, suggestive of a number of genomic regions subject to recent selection. Finally, we are able to identify recent bouts of gene flow between breeding populations that could point to the sharing of agronomically adaptive variation. These results are supported by pedigrees and breeders’ understanding of germplasm sharing. PMID:26715093

Quasilinear diffusion operator for wave-particle interactions in inhomogeneous magnetic fields

NASA Astrophysics Data System (ADS)

Catto, P. J.; Lee, J.; Ram, A. K.

2017-10-01

The Kennel-Engelmann quasilinear diffusion operator for wave-particle interactions is for plasmas in a uniform magnetic field. The operator is not suitable for fusion devices with inhomogeneous magnetic fields. Using drift kinetic and high frequency gyrokinetic equations for the particle distribution function, we have derived a quasilinear operator which includes magnetic drifts. The operator applies to RF waves in any frequency range and is particularly relevant for minority ion heating. In order to obtain a physically meaningful operator, the first order correction to the particle's magnetic moment has to be retained. Consequently, the gyrokinetic change of variables has to be retained to a higher order than usual. We then determine the perturbed distribution function from the gyrokinetic equation using a novel technique that solves the kinetic equation explicitly for certain parts of the function. The final form of the diffusion operator is compact and completely expressed in terms of the drift kinetic variables. It is not transit averaged and retains the full poloidal angle variation without any Fourier decomposition. The quasilinear diffusion operator reduces to the Kennel-Engelmann operator for uniform magnetic fields. Supported by DoE Grant DE-FG02-91ER-54109.

Broad-band beam buncher

DOEpatents

Goldberg, David A.; Flood, William S.; Arthur, Allan A.; Voelker, Ferdinand

1986-01-01

A broad-band beam buncher is disclosed, comprising an evacuated housing, an electron gun therein for producing an electron beam, a buncher cavity having entrance and exit openings through which the beam is directed, grids across such openings, a source providing a positive DC voltage between the cavity and the electron gun, a drift tube through which the electron beam travels in passing through such cavity, grids across the ends of such drift tube, gaps being provided between the drift tube grids and the entrance and exit grids, a modulator for supplying an ultrahigh frequency modulating signal to the drift tube for producing velocity modulation of the electrons in the beam, a drift space in the housing through which the velocity modulated electron beam travels and in which the beam is bunched, and a discharge opening from such drift tube and having a grid across such opening through which the bunched electron beam is discharged into an accelerator or the like. The buncher cavity and the drift tube may be arranged to constitute an extension of a coaxial transmission line which is employed to deliver the modulating signal from a signal source. The extended transmission line may be terminated in its characteristic impedance to afford a broad-band response and the device as a whole designed to effect broad-band beam coupling, so as to minimize variations of the output across the response band.

Damping of lower hybrid waves by low-frequency drift waves

NASA Astrophysics Data System (ADS)

Krall, Nicholas A.

1989-11-01

The conditions under which a spectrum of lower hybrid drift waves will decay into low-frequency drift waves (LFD) are calculated. The purpose is to help understand why lower hybrid drift waves are not seen in all field-reversed configuration (FRC) experiments in which they are predicted. It is concluded that if there is in the plasma a LFD wave amplitude above a critical level, lower hybrid waves will decay into low-frequency drift waves. The critical level required to stabilize TRX-2 [Phys. Fluids 30, 1497 (1987)] is calculated and found to be reasonably consistent with theoretical estimates.

Variation of saturation effect in the ionospheric F2 critical frequency at low latitude

NASA Astrophysics Data System (ADS)

Ikubanni, S. O.; Adeniyi, J. O.

2013-08-01

Saturation in the dependence of foF2 on solar flux is a phenomenon more pronounced in the equatorial ionization anomaly region. The phenomenon was observed in the relationship between the F2 critical frequency (foF2) and any solar indices. Using a two-segmented regression fit on data from an African low latitude station (Geographical Latitude 12.4°N; Geomagnetic latitude 3.5°N), saturation features from the dependence of foF2 on solar radio flux (F10.7) was studied. Diurnal and seasonal variation were studied for the first time in this low latitude region of the African sector. Significant variations were observed, especially in the solstices. It was observed that saturation effect is closely related to the hourly F2 critical frequency and these results were compared with those from Asian, Australian and the American sectors. The diurnal and seasonal variations find their explanations in the photo-ionization process, the fountain effect, and the pre-reversal enhancement while the seasonal variation was attributed to both the ion drift and thermospheric circulation. Future work with larger volume of data is expected to validate the observations from this study.

Mathematical Models for Doppler Measurements

NASA Technical Reports Server (NTRS)

Lear, William M.

1987-01-01

Error analysis increases precision of navigation. Report presents improved mathematical models of analysis of Doppler measurements and measurement errors of spacecraft navigation. To take advantage of potential navigational accuracy of Doppler measurements, precise equations relate measured cycle count to position and velocity. Drifts and random variations in transmitter and receiver oscillator frequencies taken into account. Mathematical models also adapted to aircraft navigation, radar, sonar, lidar, and interferometry.

Intracellular population genetics: evidence for random drift of mitochondrial allele frequencies in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

PubMed

Thrailkill, K M; Birky, C W

1980-09-01

We report evidence for random drift of mitochondrial allele frequencies in zygote clones of Saccharomyces cerevisiae and Schizosaccharomyces pombe. Monofactorial and bifactorial crosses were done, using strains resistant or sensitive to erythromycin (alleles Er, Es), oligomycin (Or, Os), or diuron (Dr, Ds). The frequencies of resistant and sensitive cells (and thus the frequencies of the resistant and sensitive alleles) were determined for each of a number of clones of diploid cells arising from individual zygotes. Allele frequencies were extremely variable among these zygote clones; some clones were "uniparental," with mitochondrial alleles from only one parent present. These observations suggest random drift of the allele frequencies in the population of mitochondrial genes within an individual zygote and its diploid progeny. Drift would cease when all the cells in a clone become homoplasmic, due to segregation of the mitochondrial genomes during vegetative cell divisions. To test this, we delayed cell division (and hence segregation) for varying times by starving zygotes in order to give drift more time to operate. As predicted, delaying cell division resulted in an increase in the variance of allele frequencies among the zygote clones and an increase in the proportion of uniparental zygote clones. The changes in form of the allele frequency distributions resembled those seen during random drift in finite Mendelian populations. In bifactorial crosses, genotypes as well as individual alleles were fixed or lost in some zygote clones. However, the mean recombination frequency for a large number of clones did not increase when cell division was delayed. Several possible molecular mechanisms for intracellular random drift are discussed.

Classification of EEG signals to identify variations in attention during motor task execution.

PubMed

Aliakbaryhosseinabadi, Susan; Kamavuako, Ernest Nlandu; Jiang, Ning; Farina, Dario; Mrachacz-Kersting, Natalie

2017-06-01

Brain-computer interface (BCI) systems in neuro-rehabilitation use brain signals to control external devices. User status such as attention affects BCI performance; thus detecting the user's attention drift due to internal or external factors is essential for high detection accuracy. An auditory oddball task was applied to divert the users' attention during a simple ankle dorsiflexion movement. Electroencephalogram signals were recorded from eighteen channels. Temporal and time-frequency features were projected to a lower dimension space and used to analyze the effect of two attention levels on motor tasks in each participant. Then, a global feature distribution was constructed with the projected time-frequency features of all participants from all channels and applied for attention classification during motor movement execution. Time-frequency features led to significantly better classification results with respect to the temporal features, particularly for electrodes located over the motor cortex. Motor cortex channels had a higher accuracy in comparison to other channels in the global discrimination of attention level. Previous methods have used the attention to a task to drive external devices, such as the P300 speller. However, here we focus for the first time on the effect of attention drift while performing a motor task. It is possible to explore user's attention variation when performing motor tasks in synchronous BCI systems with time-frequency features. This is the first step towards an adaptive real-time BCI with an integrated function to reveal attention shifts from the motor task. Copyright © 2017 Elsevier B.V. All rights reserved.

Drift Wave Simulation in Toroidal Geometry.

NASA Astrophysics Data System (ADS)

Lebrun, Maurice Joseph, III

1988-12-01

The drift wave, a general category of plasma behavior arising from a plasma inhomogeneity, is studied using the particle simulation method. In slab geometry, the drift wave (or universal mode) is stabilized by any finite amount of magnetic shear. In toroidal geometry, however, the coupling of the poloidal harmonics gives rise to a new branch of drift wave eigenmodes called the toroidicity -induced mode, which is predicted to be unstable in some regimes. The drift wave in a toroidal system is intrinsically three-dimensional, and is sensitive to the handling of the parallel electron dynamics, the (nearly) perpendicular wave dynamics, and the radial variation of magnetic field vector (shear). A simulation study must therefore be kinetic in nature, motivating the extension of particle simulation techniques to complex geometries. From this effort a three dimensional particle code in a toroidal coordinate system has been developed and applied to the toroidal drift wave problem. The code uses an (r,theta,phi) -type coordinate system, and a nonuniform radial grid that increases resolution near the mode-rational surfaces. Full ion dynamics and electron guiding center dynamics are employed. Further, the algorithm incorporates a straightforward limiting process to cylindrical geometry and slab geometry, enabling comparison to the theoretical results in these regimes. Simulations of the density-driven modes in toroidal geometry retain a single toroidal mode number (n = 9). In this regime, the poloidal harmonics are expected to be strongly coupled, giving rise to the marginally unstable toroidicity-induced drift mode. Analysis of the simulation data reveals a strong, low-frequency response that peaks near each mode rational surface. Further, the characteristic oscillation frequencies persist from one mode rational surface to the next, which identifies them as multiple harmonics of the toroidicity-induced mode. The lowest harmonic occurs at a frequency of omega/ omega^{*} ~ 0.26, which is reasonably close to the prediction of linear theory. Interferogram analysis of these modes indicates a "ballooning" structure toward the outside of the torus. The amplitude of the potential is observed to grow exponentially for the m = 8 through m = 10 poloidal mode numbers, with a growth rate of approximately gamma/omega ^{*} ~ 0.075. Saturation occurs at time t ~ 1000 Omega_sp{i}{-1}, and may be caused by quasilinear flattening of the density profile.

FIBER AND INTEGRATED OPTICS. OTHER TOPICS IN QUANTUM ELECTRONICS: Modulation method for reducing long-term drift of the emission frequency of an He-Ne laser (λ = 0.63 μm) generating two orthogonally polarized electromagnetic waves

NASA Astrophysics Data System (ADS)

Vitushkin, L. F.; Zakharenko, Yu G.; Smirnov, M. Z.

1990-05-01

Theoretical and experimental investigations were made of the principal physical factors responsible for a long-term drift of the frequency of the radiation generated in a stabilized two-frequency He-Ne laser with internal mirrors, emitting two orthogonally polarized electromagnetic waves. When zero difference between the intensities was controlled by a modulation method and the frequency was set before each measurement, a long-term (over a period of a year) frequency drift did not exceed 10 - 8, but in the absence of such control the drift could reach 5 × 10 - 8.

Mitochondrial DNA haplogroup variation of contemporary mixed South Americans reveals prehistoric displacements linked to archaeologically-derived culture history.

PubMed

Rothhammer, Francisco; Fehren-Schmitz, Lars; Puddu, Giannina; Capriles, José

2017-11-01

The purpose of this study was to examine South American population structure and prehistoric population displacements prior to the Spanish conquest, utilizing mitochondrial DNA haplogroups of extant mixed populations from Mexico, Costa Rica, Venezuela, Colombia, Ecuador, Peru, Bolivia, Brazil, Argentina, and Chile. Relative frequencies of four pan-American haplogroups, obtained from published databases, were analyzed to evaluate patterns of variations, population structure and possible prehistoric migration pathways. Patterns of mtDNA variation verify biogeographic drift processes and possible migratory pathways. We propose an updated model of South American colonization that is fully compatible with previous studies based on autosomal, mtDNA, and Y chromosome variation and with archaeologically-derived culture history. © 2017 Wiley Periodicals, Inc.

Microgeographic and temporal genetic variation in populations of the bluetongue virus vector Culicoides variipennis (Diptera: Ceratopogonidae).

PubMed

Tabachnick, W J

1992-05-01

Seven Colorado populations of the bluetongue virus vector Culicoides varipennis (Coquillett) were analyzed for genetic variation at 19-21 isozyme loci. Permanent populations, which overwinter as larvae, showed little temporal genetic change at 19 loci. PGD and MDH showed seasonal changes in gene frequencies, attributable to selection at two permanent populations. Two temporary populations showed low heterozygosity compared with permanent populations. Independent estimates of gene flow, calculated using FST and the private allele method, were Nm* = 2.15 and 6.95, respectively. Colorado C. variipennis permanent populations showed high levels of gene flow which prevented significant genetic differentiation due to genetic drift. Temporary populations showed significant gene frequency differences from nearby permanent populations due to the "founder effect" associated with chance colonization.

Impact of time-dependent nonaxisymmetric velocity perturbations on dynamo action of von Kármán-like flows.

PubMed

Giesecke, André; Stefani, Frank; Burguete, Javier

2012-12-01

We present numerical simulations of the kinematic induction equation in order to examine the dynamo efficiency of an axisymmetric von Kármán-like flow subject to time-dependent nonaxisymmetric velocity perturbations. The numerical model is based on the setup of the French von Kármán-sodium dynamo (VKS) and on the flow measurements from a water experiment conducted at the University of Navarra in Pamplona, Spain. The principal experimental observations that are modeled in our simulations are nonaxisymmetric vortexlike structures which perform an azimuthal drift motion in the equatorial plane. Our simulations show that the interactions of these periodic flow perturbations with the fundamental drift of the magnetic eigenmode (including the special case of nondrifting fields) essentially determine the temporal behavior of the dynamo state. We find two distinct regimes of dynamo action that depend on the (prescribed) drift frequency of an (m=2) vortexlike flow perturbation. For comparatively slowly drifting vortices we observe a narrow window with enhanced growth rates and a drift of the magnetic eigenmode that is synchronized with the perturbation drift. The resonance-like enhancement of the growth rates takes place when the vortex drift frequency roughly equals the drift frequency of the magnetic eigenmode in the unperturbed system. Outside of this small window, the field generation is hampered compared to the unperturbed case, and the field amplitude of the magnetic eigenmode is modulated with approximately twice the vortex drift frequency. The abrupt transition between the resonant regime and the modulated regime is identified as a spectral exceptional point where eigenvalues (growth rates and frequencies) and eigenfunctions of two previously independent modes collapse. In the actual configuration the drift frequencies of the velocity perturbations that are observed in the water experiment are much larger than the fundamental drift frequency of the magnetic eigenmode that is obtained from our numerical simulations. Hence, we conclude that the fulfillment of the resonance condition might be unlikely in present day dynamo experiments. However, a possibility to increase the dynamo efficiency in the VKS experiment might be realized by an application of holes or fingers on the outer boundary in the equatorial plane. These mechanical distortions provoke an anchorage of the vortices at fixed positions thus allowing an adjustment of the temporal behavior of the nonaxisymmetric flow perturbations.

AstroSat/LAXPC Detection of Millisecond Phenomena in 4U 1728-34

NASA Astrophysics Data System (ADS)

Verdhan Chauhan, Jai; Yadav, J. S.; Misra, Ranjeev; Agrawal, P. C.; Antia, H. M.; Pahari, Mayukh; Sridhar, Navin; Dedhia, Dhiraj; Katoch, Tilak; Madhwani, P.; Manchanda, R. K.; Paul, B.; Shah, Parag

2017-05-01

The low-mass X-ray binary 4U 1728-24 was observed with AstroSat/LAXPC on 2016 March 8th. Data from a randomly chosen orbit of over 3 ks was analyzed for detection of rapid intensity variations. We found that the source intensity was nearly steady but, toward the end of the observation, a typical Type-1 burst was detected. Dynamical power spectrum of the data in the 3-20 keV band, reveals the presence of a kHz Quasi-Periodic Oscillation (QPO) for which the frequency drifted from ˜815 Hz at the beginning of the observation to about 850 Hz just before the burst. The QPO is also detected in the 10-20 keV band, which was not obtainable by earlier RXTE observations of this source. Even for such a short observation with a drifting QPO frequency, the time lag between the 5-10 and 10-20 keV bands can be constrained to be less than 100 microseconds. The Type-1 burst that lasted for about 20 s had a typical profile. During the first four seconds, dynamic power spectra reveal a burst oscillation for which the frequency increased from ˜361.5 to ˜363.5 Hz. This is consistent with the earlier results obtained with RXTE/PCA, showing the same spin frequency of the neutron star. The present results demonstrate the capability of the LAXPC instrument for detecting millisecond variability even from short observations. After RXTE ceased operation, LAXPC on AstroSat is the only instrument at present with the capability of detecting kHz QPOs and other kinds of rapid variations from 3 keV to 20 keV and possibly at higher energies as well.

Stochastic modelling of shifts in allele frequencies reveals a strongly polygynous mating system in the re-introduced Asiatic wild ass.

PubMed

Renan, Sharon; Greenbaum, Gili; Shahar, Naama; Templeton, Alan R; Bouskila, Amos; Bar-David, Shirli

2015-04-01

Small populations are prone to loss of genetic variation and hence to a reduction in their evolutionary potential. Therefore, studying the mating system of small populations and its potential effects on genetic drift and genetic diversity is of high importance for their viability assessments. The traditional method for studying genetic mating systems is paternity analysis. Yet, as small populations are often rare and elusive, the genetic data required for paternity analysis are frequently unavailable. The endangered Asiatic wild ass (Equus hemionus), like all equids, displays a behaviourally polygynous mating system; however, the level of polygyny has never been measured genetically in wild equids. Combining noninvasive genetic data with stochastic modelling of shifts in allele frequencies, we developed an alternative approach to paternity analysis for studying the genetic mating system of the re-introduced Asiatic wild ass in the Negev Desert, Israel. We compared the shifts in allele frequencies (as a measure of genetic drift) that have occurred in the wild ass population since re-introduction onset to simulated scenarios under different proportions of mating males. We revealed a strongly polygynous mating system in which less than 25% of all males participate in the mating process each generation. This strongly polygynous mating system and its potential effect on the re-introduced population's genetic diversity could have significant consequences for the long-term persistence of the population in the Negev. The stochastic modelling approach and the use of allele-frequency shifts can be further applied to systems that are affected by genetic drift and for which genetic data are limited. © 2015 John Wiley & Sons Ltd.

Haplotype Frequency Distribution in Northeastern European Saduria entomon (Crustacea: Isopoda) Populations. A Phylogeographic Approach

NASA Astrophysics Data System (ADS)

Sell, Jerzy

2003-11-01

The distribution pattern of mtDNA haplotypes in distinct populations of the glacial relict crustacean Saduria entomon was examined to assess phylogeographic relationships among them. Populations from the Baltic, the White Sea and the Barents Sea were screened for mtDNA variation using PCR-based RFLP analysis of a 1150 bp fragment containing part of the CO I and CO II genes. Five mtDNA haplotypes were recorded. An analysis of geographical heterogeneity in haplotype frequency distributions revealed significant differences among populations. The isolated populations of S. entomon have diverged since the retreat of the last glaciation. The geographical pattern of variation is most likely the result of stochastic (founder effect, genetic drift) mechanisms and suggests that the haplotype differentiation observed is probably older than the isolation of the Baltic and Arctic seas.

Patterns and causes of geographic variation in bat echolocation pulses.

PubMed

Jiang, Tinglei; Wu, Hui; Feng, Jiang

2015-05-01

Evolutionary biologists have a long-standing interest in how acoustic signals in animals vary geographically, because divergent ecology and sensory perception play an important role in speciation. Geographic comparisons are valuable in determining the factors that influence divergence of acoustic signals. Bats are social mammals and they depend mainly on echolocation pulses to locate prey, to navigate and to communicate. Mounting evidence shows that geographic variation of bat echolocation pulses is common, with a mean 5-10 kHz differences in peak frequency, and a high level of individual variation may be nested in this geographical variation. However, understanding the geographic variation of echolocation pulses in bats is very difficult, because of differences in sample and statistical analysis techniques as well as the variety of factors shaping the vocal geographic evolution. Geographic differences in echolocation pulses of bats generally lack latitudinal, longitudinal and elevational patterns, and little is known about vocal dialects. Evidence is accumulating to support the fact that geographic variation in echolocation pulses of bats may be caused by genetic drift, cultural drift, ecological selection, sexual selection and social selection. Future studies could relate geographic differences in echolocation pulses to social adaptation, vocal learning strategies and patterns of dispersal. In addition, new statistical techniques and acoustic playback experiments may help to illustrate the causes and consequences of the geographic evolution of echolocation pulse in bats. © 2015 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

Magnetic field shift due to mechanical vibration in functional magnetic resonance imaging.

PubMed

Foerster, Bernd U; Tomasi, Dardo; Caparelli, Elisabeth C

2005-11-01

Mechanical vibrations of the gradient coil system during readout in echo-planar imaging (EPI) can increase the temperature of the gradient system and alter the magnetic field distribution during functional magnetic resonance imaging (fMRI). This effect is enhanced by resonant modes of vibrations and results in apparent motion along the phase encoding direction in fMRI studies. The magnetic field drift was quantified during EPI by monitoring the resonance frequency interleaved with the EPI acquisition, and a novel method is proposed to correct the apparent motion. The knowledge on the frequency drift over time was used to correct the phase of the k-space EPI dataset. Since the resonance frequency changes very slowly over time, two measurements of the resonance frequency, immediately before and after the EPI acquisition, are sufficient to remove the field drift effects from fMRI time series. The frequency drift correction method was tested "in vivo" and compared to the standard image realignment method. The proposed method efficiently corrects spurious motion due to magnetic field drifts during fMRI. (c) 2005 Wiley-Liss, Inc.

Earthquake simulator tests and associated study of an 1/6-scale nine-story RC model

NASA Astrophysics Data System (ADS)

Sun, Jingjiang; Wang, Tao; Qi, Hu

2007-09-01

Earthquake simulator tests of a 1/6-scale nine-story reinforced concrete frame-wall model are described in the paper. The test results and associated numerical simulation are summarized and discussed. Based on the test data, a relationship between maximum inter-story drift and damage state is established. Equations of variation of structural characteristics (natural frequency and equivalent stiffness) with overall drifts are derived by data fitting, which can be used to estimate structural damage state if structural characteristics can be measured. A comparison of the analytical and experimental results show that both the commonly used equivalent beam and fiber element models can simulate the nonlinear seismic response of structures very well. Finally, conclusions associated with seismic design and damage evaluation of RC structures are presented.

Drifting oscillations in axion monodromy

DOE PAGES

Flauger, Raphael; McAllister, Liam; Silverstein, Eva; ...

2017-10-31

In this paper, we study the pattern of oscillations in the primordial power spectrum in axion monodromy inflation, accounting for drifts in the oscillation period that can be important for comparing to cosmological data. In these models the potential energy has a monomial form over a super-Planckian field range, with superimposed modulations whose size is model-dependent. The amplitude and frequency of the modulations are set by the expectation values of moduli fields. We show that during the course of inflation, the diminishing energy density can induce slow adjustments of the moduli, changing the modulations. We provide templates capturing the effectsmore » of drifting moduli, as well as drifts arising in effective field theory models based on softly broken discrete shift symmetries, and we estimate the precision required to detect a drifting period. A non-drifting template suffices over a wide range of parameters, but for the highest frequencies of interest, or for sufficiently strong drift, it is necessary to include parameters characterizing the change in frequency over the e-folds visible in the CMB. Finally, we use these templates to perform a preliminary search for drifting oscillations in a part of the parameter space in the Planck nominal mission data.« less

A General Population Genetic Framework for Antagonistic Selection That Accounts for Demography and Recurrent Mutation

PubMed Central

Connallon, Tim; Clark, Andrew G.

2012-01-01

Antagonistic selection—where alleles at a locus have opposing effects on male and female fitness (“sexual antagonism”) or between components of fitness (“antagonistic pleiotropy”)—might play an important role in maintaining population genetic variation and in driving phylogenetic and genomic patterns of sexual dimorphism and life-history evolution. While prior theory has thoroughly characterized the conditions necessary for antagonistic balancing selection to operate, we currently know little about the evolutionary interactions between antagonistic selection, recurrent mutation, and genetic drift, which should collectively shape empirical patterns of genetic variation. To fill this void, we developed and analyzed a series of population genetic models that simultaneously incorporate these processes. Our models identify two general properties of antagonistically selected loci. First, antagonistic selection inflates heterozygosity and fitness variance across a broad parameter range—a result that applies to alleles maintained by balancing selection and by recurrent mutation. Second, effective population size and genetic drift profoundly affect the statistical frequency distributions of antagonistically selected alleles. The “efficacy” of antagonistic selection (i.e., its tendency to dominate over genetic drift) is extremely weak relative to classical models, such as directional selection and overdominance. Alleles meeting traditional criteria for strong selection (Nes >> 1, where Ne is the effective population size, and s is a selection coefficient for a given sex or fitness component) may nevertheless evolve as if neutral. The effects of mutation and demography may generate population differences in overall levels of antagonistic fitness variation, as well as molecular population genetic signatures of balancing selection. PMID:22298707

A general population genetic framework for antagonistic selection that accounts for demography and recurrent mutation.

PubMed

Connallon, Tim; Clark, Andrew G

2012-04-01

Antagonistic selection--where alleles at a locus have opposing effects on male and female fitness ("sexual antagonism") or between components of fitness ("antagonistic pleiotropy")--might play an important role in maintaining population genetic variation and in driving phylogenetic and genomic patterns of sexual dimorphism and life-history evolution. While prior theory has thoroughly characterized the conditions necessary for antagonistic balancing selection to operate, we currently know little about the evolutionary interactions between antagonistic selection, recurrent mutation, and genetic drift, which should collectively shape empirical patterns of genetic variation. To fill this void, we developed and analyzed a series of population genetic models that simultaneously incorporate these processes. Our models identify two general properties of antagonistically selected loci. First, antagonistic selection inflates heterozygosity and fitness variance across a broad parameter range--a result that applies to alleles maintained by balancing selection and by recurrent mutation. Second, effective population size and genetic drift profoundly affect the statistical frequency distributions of antagonistically selected alleles. The "efficacy" of antagonistic selection (i.e., its tendency to dominate over genetic drift) is extremely weak relative to classical models, such as directional selection and overdominance. Alleles meeting traditional criteria for strong selection (N(e)s > 1, where N(e) is the effective population size, and s is a selection coefficient for a given sex or fitness component) may nevertheless evolve as if neutral. The effects of mutation and demography may generate population differences in overall levels of antagonistic fitness variation, as well as molecular population genetic signatures of balancing selection.

Solar Drift-Pair Bursts

NASA Astrophysics Data System (ADS)

Stanislavsky, A.; Volvach, Ya.; Konovalenko, A.; Koval, A.

2017-08-01

In this paper a new sight on the study of solar bursts historically called drift pairs (DPs) is presented. Having a simple morphology on dynamic spectra of radio records (two short components separated in time, and often they are very similar) and discovered at the dawn of radio astronomy, their features remain unexplained totally up to now. Generally, the DPs are observed during the solar storms of type III bursts, but not every storm of type III bursts is linked with DPs. Detected by ground-based instruments at decameter and meter wavelengths, the DP bursts are limited in frequency bandwidth. They can drift from high frequencies to low ones and vice versa. Their frequency drift rate may be both lower and higher than typical rates of type III bursts at the same frequency range. The development of low-frequency radio telescopes and data processing provide additional possibilities in the research. In this context the fresh analysis of DPs, made from recent observations in the summer campaign of 2015, are just considered. Their study was implemented by updated tools of the UTR-2 radio telescope at 9-33 MHz. During 10-12 July of 2015, DPs forming the longest patterns on dynamic spectra are about 7% of the total number of recorded DPs. Their marvelous resemblance in frequency drift rates with the solar S-bursts is discussed.

The relative contribution of drift and selection to phenotypic divergence: A test case using the horseshoe bats Rhinolophus simulator and Rhinolophus swinnyi.

PubMed

Mutumi, Gregory L; Jacobs, David S; Winker, Henning

2017-06-01

Natural selection and drift can act on populations individually, simultaneously or in tandem and our understanding of phenotypic divergence depends on our ability to recognize the contribution of each. According to the quantitative theory of evolution, if an organism has diversified through neutral evolutionary processes (mutation and drift), variation of phenotypic characteristics between different geographic localities ( B ) should be directly proportional to the variation within localities ( W ), that is, B  ∝  W . Significant deviations from this null model imply that non-neutral forces such as natural selection are acting on a phenotype. We investigated the relative contributions of drift and selection to intraspecific diversity using southern African horseshoe bats as a test case. We characterized phenotypic diversity across the distributional range of Rhinolophus simulator ( n =  101) and Rhinolophus swinnyi ( n =  125) using several traits associated with flight and echolocation. Our results suggest that geographic variation in both species was predominantly caused by disruptive natural selection ( B was not directly proportional to W ). Evidence for correlated selection (co-selection) among traits further confirmed that our results were not compatible with drift. Selection rather than drift is likely the predominant evolutionary process shaping intraspecific variation in traits that strongly impact fitness.

Effects of γ-ray radiation on two-dimensional molybdenum disulfide (MoS{sub 2}) nanomechanical resonators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Jaesung; Feng, Philip X.-L., E-mail: philip.feng@case.edu; Krupcale, Matthew J.

We report on experimental investigation and analysis of γ-ray radiation effects on two-dimensional molybdenum disulfide (MoS{sub 2}) drumhead nanomechanical resonators vibrating at megahertz frequencies. Given calibrated dosages of γ-ray radiation of ∼5000 photons with energy at 662 keV, upon exposure over 24 or 12 h, all the MoS{sub 2} resonators exhibit ∼0.5–2.1% resonance frequency upshifts due to the ionizing γ-ray induced charges and their interactions. The devices show γ-ray photon responsivity of ∼30–82 Hz/photon, with an intrinsic γ-ray sensitivity (limit of detection) estimated to approach ∼0.02–0.05 photon. After exposure expires, resonance frequencies return to an ordinary tendency where the frequency variations are dominatedmore » by long-term drift. These γ-ray radiation induced frequency shifts are distinctive from those due to pressure variation or surface adsorption mechanisms. The measurements and analyses show that MoS{sub 2} resonators are robust yet sensitive to very low dosage γ-ray, demonstrating a potential for ultrasensitive detection and early alarm of radiation in the very low dosage regime.« less

A comparative study of clock rate and drift estimation

NASA Technical Reports Server (NTRS)

Breakiron, Lee A.

1994-01-01

Five different methods of drift determination and four different methods of rate determination were compared using months of hourly phase and frequency data from a sample of cesium clocks and active hydrogen masers. Linear least squares on frequency is selected as the optimal method of determining both drift and rate, more on the basis of parameter parsimony and confidence measures than on random and systematic errors.

Drift and geodesic effects on the ion sound eigenmode in tokamak plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elfimov, A. G., E-mail: elfimov@if.usp.br; Smolyakov, A. I., E-mail: andrei.smolyakov@usask.ca; Melnikov, A. V.

A kinetic treatment of geodesic acoustic modes (GAMs), taking into account ion parallel dynamics, drift and the second poloidal harmonic effects is presented. It is shown that first and second harmonics of the ion sound modes, which have respectively positive and negative radial dispersion, can be coupled due to the geodesic and drift effects. This coupling results in the drift geodesic ion sound eigenmode with a frequency below the standard GAM continuum frequency. Such eigenmode may be able to explain the split modes observed in some experiments.

Drift waves control using emissive cathodes in the laboratory

NASA Astrophysics Data System (ADS)

Plihon, N.; Desangles, V.; De Giorgio, E.; Bousselin, G.; Marino, R.; Pustelnik, N.; Poye, A.

2017-12-01

Low frequency plasma fluctuations are known to be the cause of strong transport perpendicular to magnetic guiding field line. These low frequency drift waves have been studied in linear devices in the laboratory over the last two decades. Their excitation or mitigation have been addressed using different drives, such as ring biasing or electromagnetic low frequency fields. Here we present an experimental characterization of the behavior of drift waves when the profile of the background plasma rotation is controlled using hot emissive cathodes. We show that electron emission from the cathodes modify the plasma potential, which in turn controls the rotation profile. Mitigation or enhancement of drift waves (on the amplitude or azimuthal mode number) is observed depending on the plasma rotation profile.

Ultrastable automatic frequency control

NASA Technical Reports Server (NTRS)

Sabourin, D. J.; Furiga, A.

1981-01-01

Center frequency of wideband AFC circuit drifts only hundredths of percent per day. Since circuit responds only to slow frequency drifts and modulation signal has high-pass characteristics, AFC does not interfere with normal FM operation. Stable oscillator, reset circuit, and pulse generator constitute time-averaging discriminator; digital counter in pulse generator replaces usual monostable multivibrator.

Allele frequency changes due to hitch-hiking in genomic selection programs

PubMed Central

2014-01-01

Background Genomic selection makes it possible to reduce pedigree-based inbreeding over best linear unbiased prediction (BLUP) by increasing emphasis on own rather than family information. However, pedigree inbreeding might not accurately reflect loss of genetic variation and the true level of inbreeding due to changes in allele frequencies and hitch-hiking. This study aimed at understanding the impact of using long-term genomic selection on changes in allele frequencies, genetic variation and level of inbreeding. Methods Selection was performed in simulated scenarios with a population of 400 animals for 25 consecutive generations. Six genetic models were considered with different heritabilities and numbers of QTL (quantitative trait loci) affecting the trait. Four selection criteria were used, including selection on own phenotype and on estimated breeding values (EBV) derived using phenotype-BLUP, genomic BLUP and Bayesian Lasso. Changes in allele frequencies at QTL, markers and linked neutral loci were investigated for the different selection criteria and different scenarios, along with the loss of favourable alleles and the rate of inbreeding measured by pedigree and runs of homozygosity. Results For each selection criterion, hitch-hiking in the vicinity of the QTL appeared more extensive when accuracy of selection was higher and the number of QTL was lower. When inbreeding was measured by pedigree information, selection on genomic BLUP EBV resulted in lower levels of inbreeding than selection on phenotype BLUP EBV, but this did not always apply when inbreeding was measured by runs of homozygosity. Compared to genomic BLUP, selection on EBV from Bayesian Lasso led to less genetic drift, reduced loss of favourable alleles and more effectively controlled the rate of both pedigree and genomic inbreeding in all simulated scenarios. In addition, selection on EBV from Bayesian Lasso showed a higher selection differential for mendelian sampling terms than selection on genomic BLUP EBV. Conclusions Neutral variation can be shaped to a great extent by the hitch-hiking effects associated with selection, rather than just by genetic drift. When implementing long-term genomic selection, strategies for genomic control of inbreeding are essential, due to a considerable hitch-hiking effect, regardless of the method that is used for prediction of EBV. PMID:24495634

A drift line bias estimator: ARMA-based filter or calibration method, and its application in BDS/GPS-based attitude determination

NASA Astrophysics Data System (ADS)

Liang, Zhang; Yanqing, Hou; Jie, Wu

2016-12-01

The multi-antenna synchronized receiver (using a common clock) is widely applied in GNSS-based attitude determination (AD) or terrain deformations monitoring, and many other applications, since the high-accuracy single-differenced carrier phase can be used to improve the positioning or AD accuracy. Thus, the line bias (LB) parameter (fractional bias isolating) should be calibrated in the single-differenced phase equations. In the past decades, all researchers estimated the LB as a constant parameter in advance and compensated it in real time. However, the constant LB assumption is inappropriate in practical applications because of the physical length and permittivity changes of the cables, caused by the environmental temperature variation and the instability of receiver-self inner circuit transmitting delay. Considering the LB drift (or colored LB) in practical circumstances, this paper initiates a real-time estimator using auto regressive moving average-based (ARMA) prediction/whitening filter model or Moving average-based (MA) constant calibration model. In the ARMA-based filter model, four cases namely AR(1), ARMA(1, 1), AR(2) and ARMA(2, 1) are applied for the LB prediction. The real-time relative positioning model using the ARMA-based predicting LB is derived and it is theoretically proved that the positioning accuracy is better than the traditional double difference carrier phase (DDCP) model. The drifting LB is defined with a phase temperature changing rate integral function, which is a random walk process if the phase temperature changing rate is white noise, and is validated by the analysis of the AR model coefficient. The auto covariance function shows that the LB is indeed varying in time and estimating it as a constant is not safe, which is also demonstrated by the analysis on LB variation of each visible satellite during a zero and short baseline BDS/GPS experiment. Compared to the DDCP approach, in the zero-baseline experiment, the LB constant calibration (LBCC) and MA approaches improved the positioning accuracy of the vertical component, while slightly degrading the accuracy of the horizontal components. The ARMA(1, 0) model, however, improved the positioning accuracy of all three components, with 40 and 50 % improvement of the vertical component for BDS and GPS, respectively. In the short baseline experiment, compared to the DDCP approach, the LBCC approach yielded bad positioning solutions and degraded the AD accuracy; both MA and ARMA-based filter approaches improved the AD accuracy. Moreover, the ARMA(1, 0) and ARMA(1, 1) models have relatively better performance, improving to 55 % and 48 % the elevation angle in ARMA(1, 1) and MA model for GPS, respectively. Furthermore, the drifting LB variation is found to be continuous and slowly cumulative; the variation magnitudes in the unit of length are almost identical on different frequency carrier phases, so the LB variation does not show obvious correlation between different frequencies. Consequently, the wide-lane LB in the unit of cycle is very stable, while the narrow-lane LB varies largely in time. This reasoning probably also explains the phenomenon that the wide-lane LB originating in the satellites is stable, while the narrow-lane LB varies. The results of ARMA-based filters are better than the MA model, which probably implies that the modeling for drifting LB can further improve the precise point positioning accuracy.

The slow collisional E×B ion drift characterized as the major instability mechanism of a poorly magnetized plasma column with an inward-directed radial electric field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pierre, Thiéry

2016-04-15

The low-frequency instability of a cylindrical poorly magnetized plasma with an inward-directed radial electric field is studied changing the gas pressure and the ion cyclotron frequency. The unstable frequency always decreases when the gas pressure is increased indicating collisional effects. At a fixed pressure, the unstable frequency increases with the magnetic field when the B-field is low and decreases at larger magnetic field strength. We find that the transition between these two regimes is obtained when the ion cyclotron frequency equals the ion-neutrals collision frequency. This is in agreement with the theory of the slow-ion drift instability induced by themore » collisional slowing of the electric ion drift [A. Simon, Phys. Fluids 6, 382 (1963)].« less

Demodulation of micro fiber-optic Fabry-Perot interferometer using subcarrier and dual-wavelength method

NASA Astrophysics Data System (ADS)

Lu, En; Ran, Zengling; Peng, Fei; Liu, Zhiwei; Xu, Fuguo

2012-03-01

Subcarrier technology and dual-wavelength demodulation method are combined for tracking the cavity length variation of a micro fiber-optic Fabry-Perot (F-P). Compared with conventional dual-wavelength demodulation method, two operation wavelengths for demodulation are modulated with two different carrier frequencies, respectively, and then injected into optical link connected with the F-P cavity. Light power reflected for the two wavelengths is obtained by interrogating the powers of Fast Fourier Transform (FFT) spectrum at their carrier frequencies. Because the light at the two wavelengths experiences the same optical and electrical routes, measurement deviation resulting from the drift of optical and electrical links can be entirely eliminated.

Demodulation of micro fiber-optic Fabry-Perot interferometer using subcarrier and dual-wavelength method

NASA Astrophysics Data System (ADS)

Ran, Zengling; Rao, Yunjiang; Liu, Zhiwei; Xu, Fuguo

2011-05-01

Subcarrier technology and dual-wavelength demodulation method are combined for tracking the cavity length variation of a micro fiber-optic fabry-periot (F-P). Compared with conventional dual-wavelength demodulation method, two operation wavelengths for demodulation are modulated with two different carrier frequencies, respectively, and then injected into optical link connected with the F-P cavity. Light power reflected for the two wavelengths is obtained by interrogating the powers of Fast Fourier Transform (FFT) spectrum at their carrier frequencies. Because the light at the two wavelengths experiences the same optical and electrical routes, measurement deviation resulting from the drift of optical and electrical links can be entirely eliminated.

The relation between invertebrate drift and two primary controls, discharge and benthic densities, in a large regulated river

USGS Publications Warehouse

Kennedy, Theodore A.; Yackulic, Charles B.; Cross, Wyatt F.; Grams, Paul E.; Yard, Michael D.; Copp, Adam J.

2014-01-01

1. Invertebrate drift is a fundamental process in streams and rivers. Studies from laboratory experiments and small streams have identified numerous extrinsic (e.g. discharge, light intensity, water quality) and intrinsic factors (invertebrate life stage, benthic density, behaviour) that govern invertebrate drift concentrations (# m−3), but the factors that govern invertebrate drift in larger rivers remain poorly understood. For example, while large increases or decreases in discharge can lead to large increases in invertebrate drift, the role of smaller, incremental changes in discharge is poorly described. In addition, while we might expect invertebrate drift concentrations to be proportional to benthic densities (# m−2), the benthic–drift relation has not been rigorously evaluated. 2. Here, we develop a framework for modelling invertebrate drift that is derived from sediment transport studies. We use this framework to guide the analysis of high-resolution data sets of benthic density and drift concentration for four important invertebrate taxa from the Colorado River downstream of Glen Canyon Dam (mean daily discharge 325 m3 s−1) that were collected over 18 months and include multiple observations within days. Ramping of regulated flows on this river segment provides an experimental treatment that is repeated daily and allowed us to describe the functional relations between invertebrate drift and two primary controls, discharge and benthic densities. 3. Twofold daily variation in discharge resulted in a >10-fold increase in drift concentrations of benthic invertebrates associated with pools and detritus (i.e. Gammarus lacustris and Potamopyrgus antipodarum). In contrast, drift concentrations of sessile blackfly larvae (Simuliium arcticum), which are associated with high-velocity cobble microhabitats, decreased by over 80% as discharge doubled. Drift concentrations of Chironomidae increased proportional to discharge. 4. Drift of all four taxa was positively related to benthic density. Drift concentrations of Gammarus, Potamopyrgus and Chironomidae were proportional to benthic density. Drift concentrations of Simulium were positively related to benthic density, but the benthic–drift relation was less than proportional (i.e. a doubling of benthic density only led to a 40% increase in drift concentrations). 5. Our study demonstrates that invertebrate drift concentrations in the Colorado River are jointly controlled by discharge and benthic densities, but these controls operate at different timescales. Twofold daily variation in discharge associated with hydropeaking was the primary control on within-day variation in invertebrate drift concentrations. In contrast, benthic density, which varied 10- to 1000-fold among sampling dates, depending on the taxa, was the primary control on invertebrate drift concentrations over longer timescales (weeks to months).

Drifting Diaphyses: Asymmetry in Diametric Growth and Adaptation Along the Humeral and Femoral Length.

PubMed

Maggiano, Isabel S; Maggiano, Corey M; Tiesler, Vera G; Chi-Keb, Julio R; Stout, Sam D

2015-10-01

This study quantifies regional histomorphological variation along the human humeral and femoral diaphysis in order to gain information on diaphyseal growth and modeling drift patterns. Three thin sections at 40, 50, and 60% bone length were prepared from a modern Mexican skeletal sample with known age and sex to give a longitudinal perspective on the drifting cortex (12 adults and juveniles total, 7 male and 5 female). Point-count techniques were applied across eight cross-sectional regions of interest using the starburst sampling pattern to quantify percent periosteal and endosteal primary lamellar bone at each diaphyseal level. The results of this study show a posterio-medial drift pattern in the humerus with a posterior rotational trend along the diaphysis. In the femur, we observed a consistent lateral to anteriolateral drift and an increase in primary lamellar bone area of both, periosteal and endosteal origin, towards the distal part of the diaphysis. These observations characterize drifting diaphyses in greater detail, raising important questions about how to resolve microscopic and macroscopic cross-sectional analysis towards a more complete understanding of bone growth and mechanical adaptation. Accounting for modeling drift has the potential to positively impact age and physical activity estimation, and explain some of the significant regional variation in bone histomorphology seen within (and between) bone cross-sections due to differing ages of tissue formation. More study is necessary, however, to discern between possible drift scenarios and characterize populational variation. © 2015 Wiley Periodicals, Inc.

T he Faint Drifting Decameter Radio Bursts From The Solar Corona

NASA Astrophysics Data System (ADS)

Briand, C.; Zaslavsky, A.; Lecacheux, A.; Zarka, P.; Maksimovic, M.; Mangeney, A.

2007-01-01

The radio observations of solar corona at decameter wavelengths reveal the presence of numerous faint, frequency drifting structures. We analyse observations performed on July 13th , 2002 with the DSP wideband spectrometer instrument implemented at the UTR-2 radiote- lescope. The main characteristics of these structures are statistically studied. Three populations of bursts are iden- tifies. The largest one presents negative frequency drifts of about -0.89 MHz.s-1 and a lifetime extending up to 11 sec (median value 2.72 sec). A second one shows positive frequency drifts of about +0.95 MHz.s-1 and a life- time extending up to 3 sec. The last population consists in structures with very small frequency drifts of about -0.1 MHz.s-1 and a shorter lifetime (about 1 sec). Assuming that those emissions are the signature of elec- tron beams propagating through the solar corona, we deduce that they have a velocity of about 3-5 times the electron thermal velocity. A new mechanism is proposed to explain the formation of plasma waves with such low beam velocity: spatially localized, temporal fluctuations of the electron distribution function width (heating).

The measurement of linear frequency drift in oscillators

NASA Astrophysics Data System (ADS)

Barnes, J. A.

1985-04-01

A linear drift in frequency is an important element in most stochastic models of oscillator performance. Quartz crystal oscillators often have drifts in excess of a part in ten to the tenth power per day. Even commercial cesium beam devices often show drifts of a few parts in ten to the thirteenth per year. There are many ways to estimate the drift rates from data samples (e.g., regress the phase on a quadratic; regress the frequency on a linear; compute the simple mean of the first difference of frequency; use Kalman filters with a drift term as one element in the state vector; and others). Although most of these estimators are unbiased, they vary in efficiency (i.e., confidence intervals). Further, the estimation of confidence intervals using the standard analysis of variance (typically associated with the specific estimating technique) can give amazingly optimistic results. The source of these problems is not an error in, say, the regressions techniques, but rather the problems arise from correlations within the residuals. That is, the oscillator model is often not consistent with constraints on the analysis technique or, in other words, some specific analysis techniques are often inappropriate for the task at hand. The appropriateness of a specific analysis technique is critically dependent on the oscillator model and can often be checked with a simple whiteness test on the residuals.

Neoclassical quasilinear theory in the superbanana plateau regime and banana kinetics in tokamaks

NASA Astrophysics Data System (ADS)

Shaing, K. C.

2017-12-01

Neoclassical quasilinear transport theory, which is part of a more general theory that unifies neoclassical and quasilinear theories, is extended to the superbanana plateau regime for low frequency (of the order of the drift frequency) electrostatic fluctuations. The physics mechanism that is responsible for the transport losses in this regime is the superbanana plateau resonance. Besides the usual magnetic drifts, Doppler shifted mode frequency also contributes to the resonance condition. Because the characteristic frequency involved in the resonance is of the order of the drift frequency, which is lower than either the bounce or the transit frequency of the particles, the transport losses are higher than the losses calculated in the conventional quasilinear theory. The important effects of the finite banana width, i.e., banana kinetics, are included and are found to reduce the transport losses for short wavelength modes. The implications on the energetic alpha particle energy loss are discussed.

A Robust Definition for the Turbulent Langmuir Number

NASA Astrophysics Data System (ADS)

Christensen, K. H.; Breivik, O.; Sutherland, G.; Belcher, S. E.; Gargett, A.

2016-02-01

The turbulent Langmuir number combines the water side friction velocity and the surface value of the Stokes drift, and is central to parameterizations of mixing by Langmuir turbulence. Making a direct comparison between such parameterizations and observations is difficult since the surface Stokes drift is sensitive to both the spectral tail and the directional spread of the waves. We propose a new definition for the turbulent Langmuir number based on low order moments of the one-dimensional frequency spectrum, hence eliminating most of the uncertainties associated with the diagnostic spectral tail. Comparison is made between the old and the new definitions using both observed and modeled wave spectra. The new definition has a higher variation around the mean and is better at resolving typical oceanic conditions. In addition, it is backwards compatible with the old definition for monochromatic waves, which means that scalings based on large eddy simulations with monochromatic wave forcing are still valid.

Efficient detection of a CW signal with a linear frequency drift

NASA Technical Reports Server (NTRS)

Swarztrauber, Paul N.; Bailey, David H.

1989-01-01

An efficient method is presented for the detection of a continuous wave (CW) signal with a frequency drift that is linear in time. Signals of this type occur in transmissions between any two locations that are accelerating relative to one another, e.g., transmissions from the Voyager spacecraft. We assume that both the frequency and the drift are unknown. We also assume that the signal is weak compared to the Gaussian noise. The signal is partitioned into subsequences whose discrete Fourier transforms provide a sequence of instantaneous spectra at equal time intervals. These spectra are then accumulated with a shift that is proportional to time. When the shift is equal to the frequency drift, the signal to noise ratio increases and detection occurs. Here, we show how to compute these accumulations for many shifts in an efficient manner using a variety of Fast Fourier Transformations (FFT). Computing time is proportional to L log L where L is the length of the time series.

A low temperature drift coefficient crystal-less frequency reference clock compensated by temperature sensor for microsystem

NASA Astrophysics Data System (ADS)

Gao, Zhiqiang; Wu, Ruixuan; Wang, Yuteng; Gao, Yuan; Liu, Xiaowei; Zhu, Jiaqi

2018-05-01

Quartz oscillator has been widely used as reference clock source in the microsystems due to its good performance. But a good crystal oscillator costs too much and its bulky size is not desired. This paper aims at designing an alternative integrated oscillator to replace the external quartz oscillator. The proposed circuit used maneatis delay cell to construct a ring oscillator for its superior linear I-V characteristic. As for a frequency reference clock, its frequency stability over temperature is required at first. After detailed mathematical deducing and careful analysis, a formula is proposed to describe the relationship between desired control voltage and temperature by assuming the frequency as constant. This paper utilized bipolar transistor as the temperature sensor, combining it with CTAT current source and resistor to create a first-order temperature compensation control voltage. The chip with typical frequency of 10 MHz was fabricated in a 0.35 μm CMOS technology and occupied 0.45 mm2. The measured results show that the frequency variation is ±0.2% for supply changes from 4.8 V to 5 V, and frequency variation is 48 ppm when the temperature change is from ‑40∘C to 85∘C, while the average current of the tested chip consumes 50 μA from 5 V.

Neurons in cat V1 show significant clustering by degree of tuning

PubMed Central

Ziskind, Avi J.; Emondi, Al A.; Kurgansky, Andrei V.; Rebrik, Sergei P.

2015-01-01

Neighboring neurons in cat primary visual cortex (V1) have similar preferred orientation, direction, and spatial frequency. How diverse is their degree of tuning for these properties? To address this, we used single-tetrode recordings to simultaneously isolate multiple cells at single recording sites and record their responses to flashed and drifting gratings of multiple orientations, spatial frequencies, and, for drifting gratings, directions. Orientation tuning width, spatial frequency tuning width, and direction selectivity index (DSI) all showed significant clustering: pairs of neurons recorded at a single site were significantly more similar in each of these properties than pairs of neurons from different recording sites. The strength of the clustering was generally modest. The percent decrease in the median difference between pairs from the same site, relative to pairs from different sites, was as follows: for different measures of orientation tuning width, 29–35% (drifting gratings) or 15–25% (flashed gratings); for DSI, 24%; and for spatial frequency tuning width measured in octaves, 8% (drifting gratings). The clusterings of all of these measures were much weaker than for preferred orientation (68% decrease) but comparable to that seen for preferred spatial frequency in response to drifting gratings (26%). For the above properties, little difference in clustering was seen between simple and complex cells. In studies of spatial frequency tuning to flashed gratings, strong clustering was seen among simple-cell pairs for tuning width (70% decrease) and preferred frequency (71% decrease), whereas no clustering was seen for simple-complex or complex-complex cell pairs. PMID:25652921

Post-midnight equatorial irregularity distributions and vertical drift velocity variations during solstices

NASA Astrophysics Data System (ADS)

Su, S.-Y.; Liu, C. H.; Chao, C.-K.

2018-04-01

Longitudinal distributions of post-midnight equatorial ionospheric irregularity occurrences observed by ROCSAT-1 (1st satellite of the Republic of China) during moderate to high solar activity years in two solstices are studied with respect to the vertical drift velocity and density variations. The post-midnight irregularity distributions are found to be similar to the well-documented pre-midnight ones, but are different from some published distributions taken during solar minimum years. Even though the post-midnight ionosphere is sinking in general, longitudes of frequent positive vertical drift and high density seems to coincide with the longitudes of high irregularity occurrences. Large scatters found in the vertical drift velocity and density around the dip equator in different ROCSAT-1 orbits indicate the existence of large and frequent variations in the vertical drift velocity and density that seem to be able to provide sufficient perturbations for the Rayleigh-Taylor (RT) instability to cause the irregularity occurrences. The need of seeding agents such as gravity waves from atmospheric convective clouds to initiate the Rayleigh-Taylor instability may not be necessary.

Drift, selection, or migration? Processes affecting genetic differentiation and variation along a latitudinal gradient in an amphibian.

PubMed

Cortázar-Chinarro, Maria; Lattenkamp, Ella Z; Meyer-Lucht, Yvonne; Luquet, Emilien; Laurila, Anssi; Höglund, Jacob

2017-08-14

Past events like fluctuations in population size and post-glacial colonization processes may influence the relative importance of genetic drift, migration and selection when determining the present day patterns of genetic variation. We disentangle how drift, selection and migration shape neutral and adaptive genetic variation in 12 moor frog populations along a 1700 km latitudinal gradient. We studied genetic differentiation and variation at a MHC exon II locus and a set of 18 microsatellites. Using outlier analyses, we identified the MHC II exon 2 (corresponding to the β-2 domain) locus and one microsatellite locus (RCO8640) to be subject to diversifying selection, while five microsatellite loci showed signals of stabilizing selection among populations. STRUCTURE and DAPC analyses on the neutral microsatellites assigned populations to a northern and a southern cluster, reflecting two different post-glacial colonization routes found in previous studies. Genetic variation overall was lower in the northern cluster. The signature of selection on MHC exon II was weaker in the northern cluster, possibly as a consequence of smaller and more fragmented populations. Our results show that historical demographic processes combined with selection and drift have led to a complex pattern of differentiation along the gradient where some loci are more divergent among populations than predicted from drift expectations due to diversifying selection, while other loci are more uniform among populations due to stabilizing selection. Importantly, both overall and MHC genetic variation are lower at northern latitudes. Due to lower evolutionary potential, the low genetic variation in northern populations may increase the risk of extinction when confronted with emerging pathogens and climate change.

Drift-driven evolution of electric signals in a Neotropical knifefish.

PubMed

Picq, Sophie; Alda, Fernando; Bermingham, Eldredge; Krahe, Rüdiger

2016-09-01

Communication signals are highly diverse traits. This diversity is usually assumed to be shaped by selective forces, whereas the null hypothesis of divergence through drift is often not considered. In Panama, the weakly electric fish Brachyhypopomus occidentalis is widely distributed in multiple independent drainage systems, which provide a natural evolutionary laboratory for the study of genetic and signal divergence in separate populations. We quantified geographic variation in the electric signals of 109 fish from five populations, and compared it to the neutral genetic variation estimated from cytochrome oxidase I (COI) sequences of the same individuals, to test whether drift may be driving divergence of their signals. Signal distances were highly correlated with genetic distances, even after controlling for geographic distances, suggesting that drift alone is sufficient to explain geographic variation in electric signals. Significant differences at smaller geographic scales (within drainages) showed, however, that electric signals may evolve at a faster rate than expected under drift, raising the possibility that additional adaptive forces may be contributing to their evolution. Overall, our data point to stochastic forces as main drivers of signal evolution in this species and extend the role of drift in the evolution of communication systems to fish and electrocommunication. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis)

PubMed Central

FUNK, W. CHRIS; LOVICH, ROBERT E.; HOHENLOHE, PAUL A.; HOFMAN, COURTNEY A.; MORRISON, SCOTT A.; SILLETT, T. SCOTT; GHALAMBOR, CAMERON K.; MALDONADO, JESUS E.; RICK, TORBEN C.; DAY, MITCH D.; POLATO, NICHOLAS R.; FITZPATRICK, SARAH W.; COONAN, TIMOTHY J.; CROOKS, KEVIN R.; DILLON, ADAM; GARCELON, DAVID K.; KING, JULIE L.; BOSER, CHRISTINA L.; GOULD, NICHOLAS; ANDELT, WILLIAM F.

2016-01-01

The evolutionary mechanisms generating the tremendous biodiversity of islands have long fascinated evolutionary biologists. Genetic drift and divergent selection are predicted to be strong on islands and both could drive population divergence and speciation. Alternatively, strong genetic drift may preclude adaptation. We conducted a genomic analysis to test the roles of genetic drift and divergent selection in causing genetic differentiation among populations of the island fox (Urocyon littoralis). This species consists of 6 subspecies, each of which occupies a different California Channel Island. Analysis of 5293 SNP loci generated using Restriction-site Associated DNA (RAD) sequencing found support for genetic drift as the dominant evolutionary mechanism driving population divergence among island fox populations. In particular, populations had exceptionally low genetic variation, small Ne (range = 2.1–89.7; median = 19.4), and significant genetic signatures of bottlenecks. Moreover, islands with the lowest genetic variation (and, by inference, the strongest historical genetic drift) were most genetically differentiated from mainland gray foxes, and vice versa, indicating genetic drift drives genome-wide divergence. Nonetheless, outlier tests identified 3.6–6.6% of loci as high FST outliers, suggesting that despite strong genetic drift, divergent selection contributes to population divergence. Patterns of similarity among populations based on high FST outliers mirrored patterns based on morphology, providing additional evidence that outliers reflect adaptive divergence. Extremely low genetic variation and small Ne in some island fox populations, particularly on San Nicolas Island, suggest that they may be vulnerable to fixation of deleterious alleles, decreased fitness, and reduced adaptive potential. PMID:26992010

Unexpected matching insensitivity in DTL of GTA accelerator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yuan, V.W.; Gilpatrick, J.D.; Johnson, K.F.

1995-05-01

The Intertank Matching Section (IMS) of the Ground Test Accelerator (GTA) contains four variable-field quadrupoles (VFQs) and is designed to match beam exiting the Radio-Frequency Quadrupole to the first tank of the Drift-tube LINAC (DTL-1). By varying the VFQ field strengths to create a range of beam mismatches at the entrance to DTL-1, one can test the sensitivity of the DTL-1 output beam to variations in the DTL-1 input beam. Experimental studies made during commissioning of the GTA indicate an unexpected result: the beam exiting DTL-1 shows little variation for a range of mismatches produced at the entrance. Results ofmore » the experiment and simulation studies are presented.« less

Polydyne displacement interferometer using frequency-modulated light

NASA Astrophysics Data System (ADS)

Arablu, Masoud; Smith, Stuart T.

2018-05-01

A radio-frequency Frequency-Modulated (FM) signal is used to diffract a He-Ne laser beam through an Acousto-Optic Modulator (AOM). Due to the modulation of the FM signal, the measured spectra of the diffracted beams comprise a series of phase-synchronized harmonics that have exact integer frequency separation. The first diffraction side-beam emerging from the AOM is selected by a slit to be used in a polydyne displacement interferometer in a Michelson interferometer topology. The displacement measurement is derived from the phase measurement of selected modulation harmonic pairs. Individual harmonic frequency amplitudes are measured using discrete Fourier transform applied to the signal from a single photodetector. Phase signals are derived from the changes in the amplitudes of different harmonic pairs (typically odd-even pairs) with the phase being extracted using a standard quadrature method. In this study, two different modulation frequencies of 5 and 10 kHz are used at different modulation depths. The measured displacements by different harmonic pairs are compared with a commercial heterodyne interferometer being used as a reference for these studies. Measurements obtained from five different harmonic pairs when the moving mirror of the interferometer is scanned over ranges up to 10 μm all show differences of less than 50 nm from the reference interferometer measurements. A drift test was also used to evaluate the differences between the polydyne interferometer and reference measurements that had different optical path lengths of approximately 25 mm and 50 mm, respectively. The drift test results indicate that about half of the differences can be attributed to temperature, pressure, and humidity variations. Other influences include Abbe and thermal expansion effects. Rough magnitude estimates using simple models for these two effects can account for remaining observed deviations.

Impact of Silicon Doping on Low-Frequency Charge Noise and Conductance Drift in GaAs/AlxGa1 -xAs Nanostructures

NASA Astrophysics Data System (ADS)

Fallahi, S.; Nakamura, J. R.; Gardner, G. C.; Yannell, M. M.; Manfra, M. J.

2018-03-01

We present measurements of low-frequency charge noise and conductance drift in modulation-doped GaAs /AlxGa1 -xAs heterostructures grown by molecular beam epitaxy in which the silicon doping density is varied from 2.4 ×1018 (critically doped) to 6.0 ×1018 cm-3 (overdoped). Quantum point contacts are used to detect charge fluctuations. A clear reduction of both short-time-scale telegraphic noise and long-time-scale conductance drift with decreased doping density is observed. These measurements indicate that the neutral doping region plays a significant role in charge noise and conductance drift.

Single-shot detection and direct control of carrier phase drift of midinfrared pulses.

PubMed

Manzoni, Cristian; Först, Michael; Ehrke, Henri; Cavalleri, Andrea

2010-03-01

We introduce a scheme for single-shot detection and correction of the carrier-envelope phase (CEP) drift of femtosecond pulses at mid-IR wavelengths. Difference frequency mixing between the mid-IR field and a near-IR gate pulse generates a near-IR frequency-shifted pulse, which is then spectrally interfered with a replica of the gate pulse. The spectral interference pattern contains shot-to-shot information of the CEP of the mid-IR field, and it can be used for simultaneous correction of its slow drifts. We apply this technique to detect and compensate long-term phase drifts at 17 microm wavelength, reducing fluctuations to only 110 mrad over hours of operation.

Triticum mosaic virus exhibits limited population variation yet shows evidence of parallel evolution after replicated serial passage in wheat.

PubMed

Bartels, Melissa; French, Roy; Graybosch, Robert A; Tatineni, Satyanarayana

2016-05-01

An infectious cDNA clone of Triticum mosaic virus (TriMV) (genus Poacevirus; family Potyviridae) was used to establish three independent lineages in wheat to examine intra-host population diversity levels within protein 1 (P1) and coat protein (CP) cistrons over time. Genetic variation was assessed at passages 9, 18 and 24 by single-strand conformation polymorphism, followed by nucleotide sequencing. The founding P1 region genotype was retained at high frequencies in most lineage/passage populations, while the founding CP genotype disappeared after passage 18 in two lineages. We found that rare TriMV genotypes were present only transiently and lineages followed independent evolutionary trajectories, suggesting that genetic drift dominates TriMV evolution. These results further suggest that experimental populations of TriMV exhibit lower mutant frequencies than that of Wheat streak mosaic virus (genus Tritimovirus; family Potyviridae) in wheat. Nevertheless, there was evidence for parallel evolution at a synonymous site in the TriMV CP cistron. Published by Elsevier Inc.

Fishbone Oscillations in the Experimental Advanced Superconductivity Tokamak

NASA Astrophysics Data System (ADS)

Xu, Li-Qing; Hu, Li-Qun; Yuan, Yi; Li, Ying-Ying; Zhong, Guo-Qiang; Liu, Hai-Qing; Chen, Kai-Yun; Shi, Tong-Hui; Duan, Yan-Min

2018-03-01

A fishbone oscillation was observed in the neutral beam injection plasma at Experimental Advanced Superconductivity Tokamak (EAST). This m = 1/n = 1 ( m, n: poloidal, toroidal mode numbers, respectively) typical internal kink mode travels in the ion-diamagnetism direction in the poloidal section with a rotation speed close to the ion diamagnetic drift frequency. A high thermal plasma beta and high amounts of energetic ions are necessary for the mode to develop. Fishbone oscillations can expel heavy impurities in the core, which favors sustaining a high-performance plasma. The born frequency of the fishbone oscillation is the ion diamagnetic drift frequency and the chirping down of the frequency during the initial growth phase is the result of a drop in iondiamagnetic drift frequency. The excitation energy is thought to be due to the thermal plasma pressure gradient; however, the development of a fishbone oscillation is related to energetic ions.

Peripheral resolution and contrast sensitivity: Effects of stimulus drift.

PubMed

Venkataraman, Abinaya Priya; Lewis, Peter; Unsbo, Peter; Lundström, Linda

2017-04-01

Optimal temporal modulation of the stimulus can improve foveal contrast sensitivity. This study evaluates the characteristics of the peripheral spatiotemporal contrast sensitivity function in normal-sighted subjects. The purpose is to identify a temporal modulation that can potentially improve the remaining peripheral visual function in subjects with central visual field loss. High contrast resolution cut-off for grating stimuli with four temporal frequencies (0, 5, 10 and 15Hz drift) was first evaluated in the 10° nasal visual field. Resolution contrast sensitivity for all temporal frequencies was then measured at four spatial frequencies between 0.5 cycles per degree (cpd) and the measured stationary cut-off. All measurements were performed with eccentric optical correction. Similar to foveal vision, peripheral contrast sensitivity is highest for a combination of low spatial frequency and 5-10Hz drift. At higher spatial frequencies, there was a decrease in contrast sensitivity with 15Hz drift. Despite this decrease, the resolution cut-off did not vary largely between the different temporal frequencies tested. Additional measurements of contrast sensitivity at 0.5 cpd and resolution cut-off for stationary (0Hz) and 7.5Hz stimuli performed at 10, 15, 20 and 25° in the nasal visual field also showed the same characteristics across eccentricities. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Analysis of drift correction in different simulated weighing schemes

NASA Astrophysics Data System (ADS)

Beatrici, A.; Rebelo, A.; Quintão, D.; Cacais, F. L.; Loayza, V. M.

2015-10-01

In the calibration of high accuracy mass standards some weighing schemes are used to reduce or eliminate the zero drift effects in mass comparators. There are different sources for the drift and different methods for its treatment. By using numerical methods, drift functions were simulated and a random term was included in each function. The comparison between the results obtained from ABABAB and ABBA weighing series was carried out. The results show a better efficacy of ABABAB method for drift with smooth variation and small randomness.

Studies of dynamo field structure and related effects: DE satellite project guest investigator program

NASA Technical Reports Server (NTRS)

Coley, W. R.

1986-01-01

The establishment of the latitudinal and longitudinal structure of the low latitude dynamo electric (DE) field was initiated using data primarily from the Unified Abstract (UA) files of the Atmosphere Explorer E (AE-E) satellite. Mass plots of the vertical ion drift values were made for 1977, 1978, and 1979. The average diurnal variation of V sub v within 20 degrees of the dip equator is remarkably similar to that obtained at Jicamarca in the same years. The average meridional ion drift velocity vectors, obtained as a function of latitude by combining the average vertical and horizontal (nearly north-south) ion drift values from the AE-E, showed the expected variations with local time and season based on the well known equatorial fountain effect theory. The average diurnal variation of the vertical drift was found for four different ranges of dip latitude for a northern solstice season. The effect of the transequatorial neutral winds was as evident in this plotting format as in the meridional or fountain effect format. Finally, the average vertical drift velocity V sub v, not the east-west electric field E sub ew, was found to be approximately independent of longitude, as expected from the dynamo theory.

Measuring changes in ambient noise levels from the installation and operation of a surge wave energy converter in the coastal ocean

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haxel, Joe H; Henkel, Sarah K

Ecosystem impacts resulting from elevated underwater noise levels generated by anthropogenic activities in the coastal ocean are poorly understood and remain difficult to address as a result of a significant gap in knowledge for existing nearshore sound levels. Ambient noise is an important habitat component for marine mammals and fish that use sound for essential functions such as communication, navigation, and foraging. Questions surrounding the amplitudes, frequency distributions, and durations of noise emissions from renewable wave energy conversion (WEC) projects during their construction and operation present concerns for long-term consequences in marine habitats. Oregon’s dynamic nearshore environment presents significant challengesmore » for passive acoustic monitoring that include flow noise contamination from wave orbital motions, turbulence from breaking surf, equipment burial, and fishing pressure from sport and commercial crabbers. This project included 2 techniques for passive acoustic data collection: 1) campaign style deployments of fixed hydrophone lander stations to capture temporal variations in noise levels and 2) a drifting hydrophone system to record spatial variations within the project site. The hydrophone lander deployments were effective and economically feasible for enabling robust temporal measurements of ambient noise levels in a variety of sea state conditions. Limiting factors for the fixed stations included 1) a flow shield mitigation strategy failure in the first deployment resulting in significant wideband data contamination and 2) flow noise contamination of the unshielded sensors restricting valuable analysis to frequencies above 500 Hz for subsequent deployments. Drifting hydrophone measurements were also effective and economically feasible (although logistically challenging in the beginning of the project due to vessel time constraints) providing a spatial distribution of sound levels, comparisons of noise levels in varying levels of vessel traffic during similar sea states, and reducing the frequencies contaminated by flow noise to f < 50 Hz by an effective drifting hydrophone system design strategy. Results from this project can still assist regulatory agencies and WEC developers in permitting and licensing, reducing project costs overall and assisting the economic development of the WEC industry, thus furthering the MHK energy industry and easing the U.S. reliance on foreign oil for energy production. Additionally, results from this project can be used to help inform coastal resource managers and regulatory agencies on existing baseline noise level variability and ecosystem health.« less

Medium and large-scale variations of dynamo-induced electric fields from AE ion drift measurements

NASA Technical Reports Server (NTRS)

Coley, W. R.; Mcclure, J. P.

1986-01-01

Current models of the low latitude electric field are largely based on data from incoherent scatter radars. These observations are extended through the addition of the rather extensive high quality electric field measurements from the Ion Drift Meter (IDM) aboard the Atmosphere Explorer (AE) spacecraft. Some preliminary results obtained from the Unified Abstract files of satellite AE-E are presented. This satellite was active from the end of 1975 through June 1981 in various elliptical and circular orbits having an inclination near 20 deg. The resulting data can be examined for the variation of ion drift with latitude, longitude, season, solar cycle, altitude, and magnetic activity. The results presented deal primarily with latitudinal variations of the drift features. Diagrams of data are given and briefly interpreted. The preliminary results presented here indicate that IDM data from the AE and the more recent Dynamics Explorer B spacecraft should continue to disclose some interesting and previously unobserved dynamical features of the low latitude F region.

Effects of Frequency Drift on the Quantification of Gamma-Aminobutyric Acid Using MEGA-PRESS

NASA Astrophysics Data System (ADS)

Tsai, Shang-Yueh; Fang, Chun-Hao; Wu, Thai-Yu; Lin, Yi-Ru

2016-04-01

The MEGA-PRESS method is the most common method used to measure γ-aminobutyric acid (GABA) in the brain at 3T. It has been shown that the underestimation of the GABA signal due to B0 drift up to 1.22 Hz/min can be reduced by post-frequency alignment. In this study, we show that the underestimation of GABA can still occur even with post frequency alignment when the B0 drift is up to 3.93 Hz/min. The underestimation can be reduced by applying a frequency shift threshold. A total of 23 subjects were scanned twice to assess the short-term reproducibility, and 14 of them were scanned again after 2-8 weeks to evaluate the long-term reproducibility. A linear regression analysis of the quantified GABA versus the frequency shift showed a negative correlation (P < 0.01). Underestimation of the GABA signal was found. When a frequency shift threshold of 0.125 ppm (15.5 Hz or 1.79 Hz/min) was applied, the linear regression showed no statistically significant difference (P > 0.05). Therefore, a frequency shift threshold at 0.125 ppm (15.5 Hz) can be used to reduce underestimation during GABA quantification. For data with a B0 drift up to 3.93 Hz/min, the coefficients of variance of short-term and long-term reproducibility for the GABA quantification were less than 10% when the frequency threshold was applied.

High Energy Density Polymer Film Capacitors

DTIC Science & Technology

2006-10-01

abandoned when, under vacuum, a noticeable output frequency drift was observed, even when the tube ripple frequency was rejected by integrating over one...only minor circuitry and software changes. The selection of the light source proved more difficult. An earlier attempt to use a florescent tube was...bulb, which of course, led to a frequency drift interpretation by the sensor array (see graph 2). Even if the "self sputtering" behavior had not 14 been

Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis).

PubMed

Funk, W Chris; Lovich, Robert E; Hohenlohe, Paul A; Hofman, Courtney A; Morrison, Scott A; Sillett, T Scott; Ghalambor, Cameron K; Maldonado, Jesus E; Rick, Torben C; Day, Mitch D; Polato, Nicholas R; Fitzpatrick, Sarah W; Coonan, Timothy J; Crooks, Kevin R; Dillon, Adam; Garcelon, David K; King, Julie L; Boser, Christina L; Gould, Nicholas; Andelt, William F

2016-05-01

The evolutionary mechanisms generating the tremendous biodiversity of islands have long fascinated evolutionary biologists. Genetic drift and divergent selection are predicted to be strong on islands and both could drive population divergence and speciation. Alternatively, strong genetic drift may preclude adaptation. We conducted a genomic analysis to test the roles of genetic drift and divergent selection in causing genetic differentiation among populations of the island fox (Urocyon littoralis). This species consists of six subspecies, each of which occupies a different California Channel Island. Analysis of 5293 SNP loci generated using Restriction-site Associated DNA (RAD) sequencing found support for genetic drift as the dominant evolutionary mechanism driving population divergence among island fox populations. In particular, populations had exceptionally low genetic variation, small Ne (range = 2.1-89.7; median = 19.4), and significant genetic signatures of bottlenecks. Moreover, islands with the lowest genetic variation (and, by inference, the strongest historical genetic drift) were most genetically differentiated from mainland grey foxes, and vice versa, indicating genetic drift drives genome-wide divergence. Nonetheless, outlier tests identified 3.6-6.6% of loci as high FST outliers, suggesting that despite strong genetic drift, divergent selection contributes to population divergence. Patterns of similarity among populations based on high FST outliers mirrored patterns based on morphology, providing additional evidence that outliers reflect adaptive divergence. Extremely low genetic variation and small Ne in some island fox populations, particularly on San Nicolas Island, suggest that they may be vulnerable to fixation of deleterious alleles, decreased fitness and reduced adaptive potential. © 2016 John Wiley & Sons Ltd.

Riding across the selection landscape: fitness consequences of annual variation in reproductive characteristics

PubMed Central

Tremblay, Raymond L.; Ackerman, James D.; Pérez, Maria-Eglée

2010-01-01

Evolutionary models estimating phenotypic selection in character size usually assume that the character is invariant across reproductive bouts. We show that variation in the size of reproductive traits may be large over multiple events and can influence fitness in organisms where these traits are produced anew each season. With data from populations of two orchid species, Caladenia valida and Tolumnia variegata, we used Bayesian statistics to investigate the effect on the distribution in fitness of individuals when the fitness landscape is not flat and when characters vary across reproductive bouts. Inconsistency in character size across reproductive periods within an individual increases the uncertainty of mean fitness and, consequently, the uncertainty in individual fitness. The trajectory of selection is likely to be muddled as a consequence of variation in morphology of individuals across reproductive bouts. The frequency and amplitude of such changes will certainly affect the dynamics between selection and genetic drift. PMID:20047875

Preliminary map showing the thickness of glacial deposits in Ohio

USGS Publications Warehouse

Soller, D.R.

1986-01-01

In contrast to the extreme variations in drift thickness encountered in the vicinity of buried channels, drift on the upland arcus is generally thinner and the variations in thickness are much less pronounced. Worthy of note, however, are three large areas where the drift sheet is relatively thick. In northwestern Ohio, a large volume of drift was deposited along the flanks of the Erie ice lobe (fig. 2) near the interlobate position with the Saginaw lobe to the northwest; drift thickness there exceeds 200 ft. Thick drift was also deposited in a roughly cast-west band across the Miami lobe. The mechanism that produced this band of thick drift is not obvious, but it may have been influenced in part by bedrock topography. Bedrock control of drift thickness is more clearly indicated to the cast of Columbus, along the eastern flank of the Scioto lobe, where ice slow was resisted by rocks of the Allegheny plateau. The edge of the plateau, or the Allegheny escarpment, is obscured by glacial deposits but its likely position (Fenneman, 1938; Stout and others, 1913; Dove, 1960; and Root and others, 1961) is shown on the map. Southward from the ice margin's reentrant position in southern Richland County, ice flowing eastward from the Scioto lobe encountered the topographically higher plateau, which constrained the ice and caused drift to accumulate in significant thicknesses just to the west of the escarpment.

Oscillations and Waves in Radio Source of Drifting Pulsation Structures

NASA Astrophysics Data System (ADS)

Karlický, Marian; Rybák, Ján; Bárta, Miroslav

2018-04-01

Drifting pulsation structures (DPSs) are considered to be radio signatures of the plasmoids formed during magnetic reconnection in the impulsive phase of solar flares. In the present paper we analyze oscillations and waves in seven examples of drifting pulsation structures, observed by the 800 - 2000 MHz Ondřejov Radiospectrograph. For their analysis we use a new type of oscillation maps, which give us much more information as regards processes in DPSs than that in previous analyses. Based on these oscillation maps, made from radio spectra by the wavelet technique, we recognized quasi-periodic oscillations with periods ranging from about 1 to 108 s in all studied DPSs. This strongly supports the idea that DPSs are generated during a fragmented magnetic reconnection. Phases of most the oscillations in DPSs, especially for the period around 1 s, are synchronized ("infinite" frequency drift) in the whole frequency range of DPSs. For longer periods in some DPSs we found that the phases of the oscillations drift with the frequency drift in the interval from -17 to +287 MHz s^{-1}. We propose that these drifting phases can be caused (a) by the fast or slow magnetosonic waves generated during the magnetic reconnection and propagating through the plasmoid, (b) by a quasi-periodic structure in the plasma inflowing to the reconnection forming a plasmoid, and (c) by a quasi-periodically varying reconnection rate in the X-point of the reconnection close to the plasmoid.

Novel approach to evaluate the dynamic variation of wind drift and evaporation losses under moving irrigation systems

Treesearch

Sayed-Hossein Sadeghi; Troy R. Peters; Mohammad Z. Amini; Sparkle L. Malone; Hank W. Loescher

2015-01-01

The increased need for water and food security requires the development of new approaches to save water through irrigation management strategies, particularly for center pivot irrigation. To do so entails monitoring of the dynamic variation in wind drift and evaporation losses (WDELs) of irrigation systems under different weather conditions and for relatively long time...

Frequency control of tunable lasers using a frequency-calibrated λ-meter in an experiment on preparation of Rydberg atoms in a magneto-optical trap

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saakyan, S A; Vilshanskaya, E V; Zelener, B B

2015-09-30

A new technique is proposed and applied to study the frequency drift of an external-cavity semiconductor laser, locked to the transmission resonances of a thermally stabilised Fabry–Perot interferometer. The interferometer frequency drift is measured to be less than 2 MHz h{sup -1}. The laser frequency is measured using an Angstrom wavemeter, calibrated using an additional stabilised laser. It is shown that this system of laser frequency control can be used to identify Rydberg transitions in ultracold {sup 7}Li atoms. (control of laser radiation parameters)

Adiabatic particle motion in a nearly drift-free magnetic field - Application to the geomagnetic tail

NASA Technical Reports Server (NTRS)

Stern, D. P.

1978-01-01

An investigation is made of the adiabatic particle motion occurring in an almost drift-free magnetic field. The dependence of the mean drift velocity on the equatorial pitch angle and the variation of the local drift velocity along the trajectories is studied. The fields considered are two-dimensional and resemble the geomagnetic tail. Derivations are presented for instantaneous and average drift velocities, bounce times, longitudinal invariants, and approximations to the adiabatic Hamiltonian. As expected, the mean drift velocity is significantly smaller than the instantaneous drift velocities found at typical points on the trajectory. The slow drift indicates that particles advance in the dawn-dusk direction rather slowly in the plasma sheet of the magnetospheric tail.

Persistent Longitudinal Variations of Plasma Density and DC Electric Fields in the Low Latitude Ionosphere Observed with Probes on the C/NOFS Satellite

NASA Technical Reports Server (NTRS)

Pfaff, R.; Freudenreich, H.; Klenzing, J.; Rowland, D.; Liebrecht, C.; Bromund, K.; Roddy, P.

2010-01-01

Continuous measurements using in situ probes on consecutive orbits of the C/N0FS satellite reveal that the plasma density is persistently organized by longitude, in both day and night conditions and at all locations within the satellite orbit, defined by its perigee and apogee of 401 km and 867 km, respectively, and its inclination of 13 degrees. Typical variations are a factor of 2 or 3 compared to mean values. Furthermore, simultaneous observations of DC electric fields and their associated E x B drifts in the low latitude ionosphere also reveal that their amplitudes are also strongly organized by longitude in a similar fashion. The drift variations with longitude are particularly pronounced in the meridional component perpendicular to the magnetic field although they are also present in the zonal component as well. The longitudes of the peak meridional drift and density values are significantly out of phase with respect to each other. Time constants for the plasma accumulation at higher altitudes with respect to the vertical drift velocity must be taken into account in order to properly interpret the detailed comparisons of the phase relationship of the plasma density and plasma velocity variations. Although for a given period corresponding to that of several days, typically one longitude region dominates the structuring of the plasma density and plasma drift data, there is also evidence for variations organized about multiple longitudes at the same time. Statistical averages will be shown that suggest a tidal "wave 4" structuring is present in both the plasma drift and plasma density data. We interpret the apparent association of the modulation of the E x B drifts with longitude as well as that of the ambient plasma density as a manifestation of tidal forces at work in the low latitude upper atmosphere. The observations demonstrate how the high duty cycle of the C/NOFS observations and its unique orbit expose fundamental processes at work in the low latitude, inner regions of geospace.

Hydroacoustic signals generated by parked and drifting icebergs in the Southern Indian and Pacific Oceans

NASA Astrophysics Data System (ADS)

Talandier, Jacques; Hyvernaud, Olivier; Reymond, Dominique; Okal, Emile A.

2006-06-01

We report the detection, principally by the French Polynesian seismic network, of hydroacoustic signals generated inside large icebergs, either `parked' along the Wilkes coast of Antarctica in the Indian Ocean, or drifting in the Southern Pacific Ocean between latitudes of 55° and 65°S, during the years 2002-2004. The signals can be classified into two very broad families, based on the nature of their spectra. A first group features prominently monochromatic signals, whose frequency can, however, fluctuate with time during a single sequence of emission (typically lasting a few to a few tens of minutes). Such signals are generally reminiscent of those detected in 2000 in the Ross Sea and are generated principally in the Indian Ocean `iceberg parking lot', between longitudes 144°E and 156°E. A new family of signals features a much broader spectrum, superimposed on a number of preferential frequencies suggesting the background activation of a number of resonators; these signals occur both in the parking lot and in the Southern Pacific. Further variations in spectra are documented inside each family. On the basis of similar in situ observations on Ross Sea icebergs under project SOUTHBERG, the first family is generally interpreted as expressing a stick-and-slip process during collisions between large iceberg masses. The second family of signals are observed during exceptional episodes of the otherwise silent drift of the icebergs in the deep Pacific Basin, some of which correlate with their passage over the various fronts defining the oceanographic southern convergence zone. Finally, a most recent episode of activity, generally similar to the above first family, was detected on 2004 December 3-4, at the ocean entry of the Dibble Ice Tongue, 600 km west of the parking lot along the coast of Antarctica. It is interpreted as resulting from collisions between large drifting icebergs and fragments of the ice tongue calved off during its disintegration, as documented by satellite imagery.

Gyrophase drifts and the orbital evolution of dust at Jupiter's Gossamer Ring

NASA Technical Reports Server (NTRS)

Northrop, T. G.; Mendis, D. A.; Schaffer, Les

1989-01-01

The 'gyrophase drift' phenomenon in Jupiter's fine-dust 'gossamer ring' is presently shown to exceed the plasma-drag drift, and may be able to move small, charged grains either toward or away from synchronous radius. The grain gyrophase drifts toward the higher temperature in the presence of a radial gradient in plasma temperature; gyrophase drift will also occur in conjunction with a radial gradient in the relative concentrations of different plasma ion species, or even due to plasma-grain velocity variation associated with the grain's cycloidal motion through the plasma. The Poynting-Robertson drift is noted to be diminutive by comparison with either the plasma-drag or gyrophase drifts.

Geographic variation in advertisement calls of a Microhylid frog - testing the role of drift and ecology.

PubMed

Lee, Ko-Huan; Shaner, Pei-Jen L; Lin, Yen-Po; Lin, Si-Min

2016-05-01

Acoustic signals for mating are important traits that could drive population differentiation and speciation. Ecology may play a role in acoustic divergence through direct selection (e.g., local adaptation to abiotic environment), constraint of correlated traits (e.g., acoustic traits linked to another trait under selection), and/or interspecific competition (e.g., character displacement). However, genetic drift alone can also drive acoustic divergence. It is not always easy to differentiate the role of ecology versus drift in acoustic divergence. In this study, we tested the role of ecology and drift in shaping geographic variation in the advertisement calls of Microhyla fissipes. We examined three predictions based on ecological processes: (1) the correlation between temperature and call properties across M. fissipes populations; (2) the correlation between call properties and body size across M. fissipes populations; and (3) reproductive character displacement (RCD) in call properties between M. fissipes populations that are sympatric with and allopatric to a congener M. heymonsi. To test genetic drift, we examined correlations among call divergence, geographic distance, and genetic distance across M. fissipes populations. We recorded the advertisement calls from 11 populations of M. fissipes in Taiwan, five of which are sympatrically distributed with M. heymonsi. We found geographic variation in both temporal and spectral properties of the advertisement calls of M. fissipes. However, the call properties were not correlated with local temperature or the callers' body size. Furthermore, we did not detect RCD. By contrast, call divergence, geographic distance, and genetic distance between M. fissipes populations were all positively correlated. The comparisons between phenotypic Q st (P st) and F st values did not show significant differences, suggesting a role of drift. We concluded that genetic drift, rather than ecological processes, is the more likely driver for the geographic variation in the advertisement calls of M. fissipes.

Burst Oscillation Probes of Neutron Stars and Nuclear Burning with LOFT

NASA Technical Reports Server (NTRS)

Strohmayer, Tod

2012-01-01

X-ray brightness oscillations during thermonuclear X-ray bursts--burst oscillations--have provided a new probe of neutron star spins as well as of the dependent nuclear burning processes. The frequency drift and amplitude evolution of the oscillations observed during bursts can in principle place constraints on the physics of thermonuclear flame spreading and the dynamics of the burning atmosphere. I use simulations appropriate to LOFT to explore the precision with which the time dependence of the oscillation frequency can be inferred. This can test, for example, different models for the frequency drift, such as up-lift versus geostrophic drift. I also explore the precision with which asymptotic frequencies can be constrained in order to estimate the capability for LOFT to detect the Doppler shifts induced by orbital motion of the neutron star from a sample of bursts at different orbital phases.

Turbulence-induced anomalous electron diffusion in the plume of the VASIMR VX-200

NASA Astrophysics Data System (ADS)

Olsen, Christopher; Ballenger, Maxwell; Squire, Jared; Longmier, Benjamin; Carter, Mark; Glover, Tim

2012-10-01

The separation of electrons from magnetic nozzles is critical to the function of the VASIMR engine and is of general importance to the field of electric propulsion. Separation of electrons by means of anomalous cross field diffusion is considered. Plume measurements using spectral analysis of custom high frequency probes characterizes the nature of oscillating electric fields in the expanding magnetic nozzle. The oscillating electric field results in frequency dependent density variations that can lead to anomalously high transport in the absence of collisions mimicking collisional transport. The spatial structure of the fluctuating fields is consistent with turbulence caused by separation of energetic (> 100 eV) non-magnetized ions and low energy magnetized electrons via the modified two-stream instability (MTSI) and generalized lower hybrid drift instability (GLHDI). Electric fields as high as 300 V/m are observed at frequencies up to an order of magnitude above the lower hybrid frequency. The electric field fluctuations dissipate with increasing axial distance consistent with changes in ion flux streamlines as plasma detachment occurs.

An historical perspective on "The world-wide distribution of allele frequencies at the human dopamine D4 receptor locus".

PubMed

Kidd, Kenneth K; Pakstis, Andrew J; Yun, Libing

2014-04-01

Human population genetics is a completely different science today compared to two decades ago, at least at the empiric level. Our paper [Chang (Hum Genet 98:91-101, 1996a)] demonstrated that three different alleles were common when one considered many populations although other low frequency alleles occurred. Because previous work had been largely done on European subjects, our findings involved 36 distinct populations and showed that East Asian populations had nearly lost the 7-repeat allele, and that Native American populations had the highest frequencies of that allele globally, was a significant early empiric demonstration of the potential magnitude of population variation at important genes. There are thousands of loci tested on many of the same populations and the gene frequency pattern seen for the DRD4 7-repeat allele is seen at other loci, arguing that this pattern commonly reflects the pattern of divergence of populations and accumulated random genetic drift.

Estimation of network path segment delays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nichols, Kathleen Marie

A method for estimation of a network path segment delay includes determining a scaled time stamp for each packet of a plurality of packets by scaling a time stamp for each respective packet to minimize a difference of at least one of a frequency and a frequency drift between a transport protocol clock of a host and a monitoring point. The time stamp for each packet is provided by the transport protocol clock of the host. A corrected time stamp for each packet is determined by removing from the scaled time stamp for each respective packet, a temporal offset betweenmore » the transport protocol clock and the monitoring clock by minimizing a temporal delay variation of the plurality of packets traversing a segment between the host and the monitoring point.« less

The effects of historical fragmentation on major histocompatibility complex class II β and microsatellite variation in the Aegean island reptile, Podarcis erhardii.

PubMed

Santonastaso, Trent; Lighten, Jackie; van Oosterhout, Cock; Jones, Kenneth L; Foufopoulos, Johannes; Anthony, Nicola M

2017-07-01

The major histocompatibility complex (MHC) plays a key role in disease resistance and is the most polymorphic gene region in vertebrates. Although habitat fragmentation is predicted to lead to a loss in MHC variation through drift, the impact of other evolutionary forces may counter this effect. Here we assess the impact of selection, drift, migration, and recombination on MHC class II and microsatellite variability in 14 island populations of the Aegean wall lizard Podarcis erhardii . Lizards were sampled from islands within the Cyclades (Greece) formed by rising sea levels as the last glacial maximum approximately 20,000 before present. Bathymetric data were used to determine the area and age of each island, allowing us to infer the corresponding magnitude and timing of genetic bottlenecks associated with island formation. Both MHC and microsatellite variation were positively associated with island area, supporting the hypothesis that drift governs neutral and adaptive variation in this system. However, MHC but not microsatellite variability declined significantly with island age. This discrepancy is likely due to the fact that microsatellites attain mutation-drift equilibrium more rapidly than MHC. Although we detected signals of balancing selection, recombination and migration, the effects of these evolutionary processes appeared negligible relative to drift. This study demonstrates how land bridge islands can provide novel insights into the impact of historical fragmentation on genetic diversity as well as help disentangle the effects of different evolutionary forces on neutral and adaptive diversity.

Effects of Frequency Drift on the Quantification of Gamma-Aminobutyric Acid Using MEGA-PRESS

PubMed Central

Tsai, Shang-Yueh; Fang, Chun-Hao; Wu, Thai-Yu; Lin, Yi-Ru

2016-01-01

The MEGA-PRESS method is the most common method used to measure γ-aminobutyric acid (GABA) in the brain at 3T. It has been shown that the underestimation of the GABA signal due to B0 drift up to 1.22 Hz/min can be reduced by post-frequency alignment. In this study, we show that the underestimation of GABA can still occur even with post frequency alignment when the B0 drift is up to 3.93 Hz/min. The underestimation can be reduced by applying a frequency shift threshold. A total of 23 subjects were scanned twice to assess the short-term reproducibility, and 14 of them were scanned again after 2–8 weeks to evaluate the long-term reproducibility. A linear regression analysis of the quantified GABA versus the frequency shift showed a negative correlation (P < 0.01). Underestimation of the GABA signal was found. When a frequency shift threshold of 0.125 ppm (15.5 Hz or 1.79 Hz/min) was applied, the linear regression showed no statistically significant difference (P > 0.05). Therefore, a frequency shift threshold at 0.125 ppm (15.5 Hz) can be used to reduce underestimation during GABA quantification. For data with a B0 drift up to 3.93 Hz/min, the coefficients of variance of short-term and long-term reproducibility for the GABA quantification were less than 10% when the frequency threshold was applied. PMID:27079873

MAINTENANCE OF ECOLOGICALLY SIGNIFICANT GENETIC VARIATION IN THE TIGER SWALLOWTAIL BUTTERFLY THROUGH DIFFERENTIAL SELECTION AND GENE FLOW.

PubMed

Bossart, J L; Scriber, J M

1995-12-01

Differential selection in a heterogeneous environment is thought to promote the maintenance of ecologically significant genetic variation. Variation is maintained when selection is counterbalanced by the homogenizing effects of gene flow and random mating. In this study, we examine the relative importance of differential selection and gene flow in maintaining genetic variation in Papilio glaucus. Differential selection on traits contributing to successful use of host plants (oviposition preference and larval performance) was assessed by comparing the responses of southern Ohio, north central Georgia, and southern Florida populations of P. glaucus to three hosts: Liriodendron tulipifera, Magnolia virginiana, and Prunus serotina. Gene flow among populations was estimated using allozyme frequencies from nine polymorphic loci. Significant genetic differentiation was observed among populations for both oviposition preference and larval performance. This differentiation was interpreted to be the result of selection acting on Florida P. glaucus for enhanced use of Magnolia, the prevalent host in Florida. In contrast, no evidence of population differentiation was revealed by allozyme frequencies. F ST -values were very small and Nm, an estimate of the relative strengths of gene flow and genetic drift, was large, indicating that genetic exchange among P. glaucus populations is relatively unrestricted. The contrasting patterns of spatial differentiation for host-use traits and lack of differentiation for electrophoretically detectable variation implies that differential selection among populations will be counterbalanced by gene flow, thereby maintaining genetic variation for host-use traits. © 1995 The Society for the Study of Evolution.

On High and Low Starting Frequencies of Type II Radio Bursts

NASA Astrophysics Data System (ADS)

Sharma, J.; Mittal, N.

2017-06-01

We have studied the characteristics of type II radio burst during the period May 1996 to March 2015, for the solar cycle 23 and 24, observed by WIND/WAVES radio instrument. A total of 642 events were recorded by the instrument during the study period. We have divided the events with two starting frequency range (high > 1 MHz; low ≤ 1MHz) as type II1 (i.e., 1-16 MHz) radio burst and type II2 (i.e., 20 KHz - 1020 KHz) radio burst which constitute the DH and km type II radio burst observed by WIND spacecraft, and determined their time and frequency characteristics. The mean drift rate of type II1 and type II2 radio bursts is 29.76 × 10-4 MHz/s and 0.17 × 10-4 MHz/s respectively, which shows that type II1 with high start frequency hase larger drift rate than the type II2 with low starting frequencies. We have also reported that the start frequency and the drift rate of type II1 are in good correlation, with a linear correlation coefficient of 0.58.

Investigations of SPS Orbit Drifts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Drøsdal, Lene; Bracco, Chiara; Cornelis, Karel

2014-07-01

The LHC is filled from the last pre-injector, the Super Proton Synchrotron (SPS), via two 3 km long transfer lines, TI 2 and TI 8. Over the LHC injection processes, a drift of the beam trajectories has been observed in TI 2 and TI 8, requiring regular correction of the trajectories, in order to ensure clean injection into the LHC. Investigations of the trajectory variations in the transfer lines showed that the main source of short term trajectory drifts are current variations of the SPS extraction septa (MSE). The stability of the power converters has been improved, but the variationsmore » are still present and further improvements are being investigated. The stability over a longer period of time cannot be explained by this source alone. The analysis of trajectory variations shows that there are also slow variations in the SPS closed orbit at extraction. A set of SPS orbit measurements has been saved and analysed. These observations will be used together with simulations and observed field errors to locate the second source of variations.« less

Genetic variation, multiple paternity, and measures of reproductive success in the critically endangered hawksbill turtle (Eretmochelys imbricata).

PubMed

González-Garza, Blanca Idalia; Stow, Adam; Sánchez-Teyer, Lorenzo Felipe; Zapata-Pérez, Omar

2015-12-01

The Yucatán Peninsula in Mexico contains some of the largest breeding groups of the globally distributed and critically endangered hawksbill turtle (Eretmochelys imbricata). An improved understanding of the breeding system of this species and how its genetic variation is structured among nesting areas is required before the threats to its survival can be properly evaluated. Here, we genotype 1195 hatchlings and 41 nesting females at 12 microsatellite loci to assess levels of multiple paternity, genetic variation and whether individual levels of homozygosity are associated with reproductive success. Of the 50 clutches analyzed, only 6% have multiple paternity. The distribution of pairwise relatedness among nesting localities (rookeries) was not random with elevated within-rookery relatedness, and declining relatedness with geographic distance indicating some natal philopatry. Although there was no strong evidence that particular rookeries had lost allelic variation via drift, younger turtles had significantly lower levels of genetic variation than older turtles, suggesting some loss of genetic variation. At present there is no indication that levels of genetic variation are associated with measures of reproductive success such as clutch size, hatching success, and frequency of infertile eggs.

Influence of electromagnetic field on soliton-mediated charge transport in biological systems.

PubMed

Brizhik, Larissa

2015-01-01

It is shown that electromagnetic fields affect dynamics of Davydov's solitons which provide charge transport processes in macromolecules during metabolism of the system. There is a resonant frequency of the field at which it can cause the transition of electrons from bound soliton states into delocalised states. Such decay of solitons reduces the effectiveness of charge transport, and, therefore, inhibits redox processes. Solitons radiate their own electromagnetic field of characteristic frequency determined by their average velocity. This self-radiated field leads to synchronization of soliton dynamics and charge transport processes, and is the source of the coherence in the system. Exposition of the system to the oscillating electromagnetic field of the frequency, which coincides with the eigen-frequency of solitons can enhance eigen-radiation of solitons, and, therefore, will enhance synchronization of charge transpor, stimulate the redox processes and increase coherence in the system. Electromagnetic oscillating field causes also ratchet phenomenon of solitons, i.e., drift of solitons in macromolecules in the presence of unbiased periodic field. Such additional drift enhances the charge transport processes. It is shown that temperature facilitates the ratchet drift. In particular, temperature fluctuations lead to the lowering of the critical value of the intensity and period of the field, above which the drift of solitons takes place. Moreover, there is a stochastic resonance in the soliton dynamics in external electromagnetic fields. This means, that there is some optimal temperature at which the drift of solitons is maximal.

Lower Hybrid Frequency Range Waves Generated by Ion Polarization Drift Due to Electromagnetic Ion Cyclotron Waves: Analysis of an Event Observed by the Van Allen Probe B

NASA Technical Reports Server (NTRS)

Khazanov, G. V.; Boardsen, S.; Krivorutsky, E. N.; Engebretson, M. J.; Sibeck, D.; Chen, S.; Breneman, A.

2017-01-01

We analyze a wave event that occurred near noon between 07:03 and 07:08 UT on 23 February 2014 detected by the Van Allen Probes B spacecraft, where waves in the lower hybrid frequency range (LHFR) and electromagnetic ion cyclotron (EMIC) waves are observed to be highly correlated, with Pearson correlation coefficient of approximately 0.86. We assume that the correlation is the result of LHFR wave generation by the ions polarization drift in the electric field of the EMIC waves. To check this assumption the drift velocities of electrons and H+, He+, and O+ ions in the measured EMIC wave electric field were modeled. Then the LHFR wave linear instantaneous growth rates for plasma with these changing drift velocities and different plasma compositions were calculated. The time distribution of these growth rates, their frequency distribution, and the frequency dependence of the ratio of the LHFR wave power spectral density (PSD)parallel and perpendicular to the ambient magnetic eld to the total PSD were found. These characteristics of the growth rates were compared with the corresponding characteristics of the observed LHFR activity. Reasonable agreement between these features and the strong correlation between EMIC and LHFR energy densities support the assumption that the LHFR wave generation can be caused by the ions polarization drift in the electric field of an EMIC wave.

Adiabatic particle motion in a nearly drift-free magnetic field: Application to the geomagnetic tail

NASA Technical Reports Server (NTRS)

Stern, D. P.

1977-01-01

The guiding center motion of particles in a nearly drift free magnetic field is analyzed in order to investigate the dependence of mean drift velocity on equatorial pitch angle, the variation of local drift velocity along the trajectory, and other properties. The mean drift for adiabatic particles is expressed by means of elliptic integrals. Approximations to the twice-averaged Hamiltonian W near z = O are derived, permitting simple representation of drift paths if an electric potential also exists. In addition, the use of W or of expressions for the longitudinal invariant allows the derivation of the twice averaged Liouville equation and of the corresponding Vlasov equation. Bounce times are calculated (using the drift-free approximation), as are instantaneous guiding center drift velocities, which are then used to provide a numerical check on the formulas for the mean drift.

Van Allen Probes observations of drift-bounce resonance and energy transfer between energetic ring current protons and poloidal Pc4 wave

NASA Astrophysics Data System (ADS)

Oimatsu, S.; Masahito, N.; Takahashi, K.; Yamamoto, K.; Keika, K.; Kletzing, C.; MacDowall, R. J.; Smith, C.; Mitchell, D. G.

2017-12-01

Poloidal Pc4 wave and proton flux oscillation due to the drift-bounce resonance are observed in the inner magnetosphere on the dayside near the magnetic equator by the Van Allen Probes spacecraft on 2 March 2014. The flux modulation is observed in the energy range of 67.0 keV to 268.8 keV with the same frequency of poloidal Pc4 wave. We estimate the resonant energy to be 120 keV for pitch angle (α) of 20º-40º or 140º-160º, and 170-180 keV for α=40º-60º or 120º-140º. The drift-bounce resonance theory gives the resonant energy of 110-120 keV, which is consistent with the observation for small α (or large α when α≥90º), but slightly higher than the observation for large α (or small α when α≥90º). We consider that this discrepancy of the resonant energy is due to the drift shell splitting. In order to examine the direction of energy flow between protons and the wave, we calculate the sign of the gradient of proton phase space density (df/dW) in both outbound and inbound paths. Results showed positive gradient in both paths, which means that the energy is transferred from the protons to the wave. During the appearance of poloidal Pc4 wave, the Dst* index shows a sudden increase of 6.7 nT. We estimate the total energy loss of the ring current from the recovery of the Dst* index and the variation of proton flux by the drift-bounce resonance. The estimated energy loss is almost comparable for both cases. Therefore, we suggest that the energy transfer from the ring current protons to the wave via the drift-bounce resonance cause the increase of Dst* index.

Form and performance: body shape and prey-capture success in four drift-feeding minnows

Treesearch

Pedro A. Rincón; Markus Bastir; Gary D. Grossman

2008-01-01

Identifying links between morphology and performance for ecologically relevant tasks will help elucidate the relationships between organismal design and fitness. We conducted a laboratory study to quantify the relationship between variation in body shape and prey-capture success in four drift-feeding minnow species. We offered drifting prey to individual fish in a test...

[Study on spectral gain characterization of FWM processes with multi-frequency pumps in photonic crystal fiber].

PubMed

Hui, Zhan-Qiang

2011-10-01

Spectral gain induced by four-wave-mixing with multi-frequency pump was investigated by exploiting the data signal and continue lights co-propagation in dispersion flattened high nonlinear photonic crystal fiber (PCF). The effects of wavelength drift of pump lights, polarization state of orthogonal or parallel of pump lights, polarization mismatch of signal light versus orthogonal pump lights, total power of signal and probe light on the spectrum gain were analyzed. The results show that good FWM gain effects with multi-frequency pump can be obtained in 36.4 nm wavelength range when power ratio of pump to probe light is appropriate and with identical polarization. Furthermore, the gain of FWM with multi-frequency pump is very sensitive to polarization fluctuation and the different idle waves obtain different gain with the variation in signal polarization state. Moreover, the impact of pump numbers was investigated. The obtained results would be helpful for further research on ultrahigh-speed all optical signal processing devices exploiting the FWM with multi-frequency pump in PCF for future photonics network.

Morphological correlates of echolocation frequency in the endemic Cape horseshoe bat, Rhinolophus capensis (Chiroptera: Rhinolophidae).

PubMed

Odendaal, Lizelle J; Jacobs, David S

2011-05-01

We investigated intraspecific variation in echolocation calls of the Cape horseshoe bat, Rhinolophus capensis, by comparing echolocation and associated morphological parameters among individuals from three populations of this species. The populations were situated in the center and at the western and eastern limits of the distribution of R. capensis. The latter two populations were situated in ecotones between vegetation biomes. Ecotone populations deviated slightly from the allometric relationship between body size and peak frequency for the genus, and there was no relationship between these variables within R. capensis. Nasal chamber length was the best predictor of peak frequency but not correlated with body size. The evolution of echolocation thus appears to have been uncoupled from body size in R. capensis. Furthermore, females used higher frequencies than males, which imply a potential social role for peak frequency. The differences in peak frequency may have originated from random founder effects and then compounded by genetic drift and/or natural selection. The latter may have acted directly on peak frequency altering skull parameters involved in echolocation independently of body size, resulting in the evolution of local acoustic signatures.

Not extinct yet: innovations in frequency domain HEM triggered by sea ice studies

NASA Astrophysics Data System (ADS)

Pfaffhuber, Andreas A.; Hendricks, Stefan

2015-10-01

The last 15 years have brought major innovations in helicopter towed time domain electromagnetics (EM), while few further developments have been made within the classic frequency domain segment. Operational use of frequency domain EM for sea ice thickness mapping acted as a driving force to develop new concepts such as the system under our consideration. Since its introduction we have implemented new concepts aiming at noise reduction and drift elimination. We decreased signal noise base levels by one to two orders of magnitude with changes to the signal transmission concept. Further, we increased the receiver coil dynamic range creating an EM setup without the need for primary field bucking. Finally, we implemented control signals inside the receiver coils to potentially eliminate system drift. Ground tests demonstrate the desired noise reduction and demonstrate drift control, leading to essentially drift free data. Airborne field data confirm these results, yet also show that the procedures can still be improved. The remaining quest is whether these specialised system improvements could also be implemented in exploration helicopter EM (HEM) systems to increase accuracy and efficiency.

Long-term Spot-Coverage Variations of 13 BY Dra G-K Dwarfs

NASA Astrophysics Data System (ADS)

Alekseev, I. Yu.; Kozhevnikova, A. V.

2018-06-01

The results of spot-coverage modeling for 13 active G-K dwarf stars based on many-year photometric observations are presented. The results of UBV RI observations of eight stars performed at the Crimean Astrophysical Observatory were used together with data from the literature in this analysis. The spot-coverage parameters for 13 selected BY Dra active red dwarfs have been redetermined to improve the zonal spot-coverage model for the stellar photospheres, which currently allows for the presence of two active longitudes. Time variations of the spot-activity characteristics of these systems were analyzed with the aim of searching for possible cyclic variations. All the stars, with the exception of OU Gem and BE Cet, show fairly strong correlations between variations in the spot latitudes and spot areas, with absolute values of the correlation coefficients, R(< ϕ>, S), ranging from 0.38 to 0.92. For five stars, an anti-correlation between the mean latitude and area of the spots was found ( R(< ϕ>, S) from-0.24 to-0.73). This behavior may reflect the drift of spots toward the equator in the course of their development. Eight stars feature positive correlations, i.e. the spots drift towards the pole as their areas increase. Nine stars demonstrate activity cycles, which are reflected in photometric variations as well as variations of the spot areas and mean latitudes. The periods of the latitude drift of the spots are found for five stars; the magnitudes of the spot-latitude drift rates are lower than the corresponding value for sunspots by a factor of 1.5-3.

`Fingerprint' Fine Structure in the Solar Decametric Radio Spectrum Solar Physics

NASA Astrophysics Data System (ADS)

Zlotnik, E. Y.; Zaitsev, V. V.; Melnik, V. N.; Konovalenko, A. A.; Dorovskyy, V. V.

2015-07-01

We study a unique fine structure in the dynamic spectrum of the solar radio emission discovered by the UTR-2 radio telescope (Kharkiv, Ukraine) in the frequency band of 20 - 30 MHz. The structure was observed against the background of a broadband type IV radio burst and consisted of parallel drifting narrow bands of enhanced emission and absorption on the background emission. The observed structure differs from the widely known zebra pattern at meter and decimeter wavelengths by the opposite directions of the frequency drift within a single stripe at a given time. We show that the observed properties can be understood in the framework of the radiation mechanism by virtue of the double plasma resonance effect in a nonuniform coronal magnetic trap. We propose a source model providing the observed frequency drift of the stripes.

Seasonal variation in drifting eggs and larvae in the upper Yangtze, China.

PubMed

Jiang, Wei; Liu, Huan-Zhang; Duan, Zhong-Hua; Cao, Wen-Xuan

2010-05-01

From 5 March to 25 July 2008, ichthyoplankton drifting into the Three Gorges Reservoir from the upper reaches of the Yangtze River were sampled daily to investigate the species composition, abundance, and seasonal variation in early-stage fishes in this area. Twenty-eight species belonging to five orders and 17 families or subfamilies were identified by analyzing fish eggs and larvae, and a total of 14.16 billion individuals were estimated drifting through the sampling section during the investigation. Among the ichthyoplankton sampled, species in Cultrinae, Cobitidae, Gobioninae and Gobiidae, along with the common carp (Cyprinus carpio Linnaeus), comprised 89.6% of the total amount. Six peaks of drift density were identified during the sampling period, and a significant correlation was found between drift density with water discharge. The dominant species were different in each drift peak, indicating different spawning times for the major species. The total amount of the four major Chinese carps that drifted through the sampling section was estimated as 0.88 billion, indicating an increase in the population sizes of these species in the upper reaches of the Yangtze River after construction of the Three Gorges Dam. Actually, these reaches have become the largest spawning area for the four major Chinese carps in the Yangtze River. The large total amount of eggs and larvae drifting through this section demonstrated that the upper reaches of the Yangtze River provided important spawning sites for many fish species, and that conservation of this area should be of great concern.

Late Quaternary history of contourite drifts and variations in Labrador Current flow, Flemish Pass, offshore eastern Canada

NASA Astrophysics Data System (ADS)

Marshall, Nicole R.; Piper, David J. W.; Saint-Ange, Francky; Campbell, D. Calvin

2014-10-01

Contourite drifts of alternating sand and mud, shaped by the Labrador Current, formed during the late Quaternary in Flemish Pass seaward of the Grand Banks of Newfoundland, Canada. The drifts preserve a record of Labrador Current flow variations through the last glacial maximum. A high-resolution seismic profile and a transect of four cores were collected across Beothuk drift on the southeast side of Flemish Pass. Downcore and lateral trends in grain size and sedimentation rate provide evidence that, between 16 and 13 ka, sediment was partitioned across Beothuk drift and the adjacent Flemish Pass floor by a strong current flow but, from 29 to 16 ka, sedimentation was more of a blanketing style, represented by draped reflections interpreted as being due to a weaker current. The data poorly resolve the low sedimentation rates since 13 ka, but the modern Labrador Current in Flemish Pass is the strongest it has been in at least the past 29 ka. Pre-29 ka current flow is interpreted based on reflection architecture in seismic profiles. A prominent drift on the southwestern side of Flemish Pass formed above a mid-Miocene erosion surface, but was buried by a mass-transport deposit after the penultimate glacial maximum and after drift deposition switched to eastern Flemish Pass. These findings illustrate the temporal complexity of drift sedimentation and provide the first detailed proxy for Labrador Current flow since the last glacial maximum.

Proceedings of the Annual Precise Time and Time Interval (PTTI) Applications and Planning Meeting (22nd) Held in Vienna, Virginia on 4-6 Dec 1990

DTIC Science & Technology

1991-05-01

the problem of the frequency drift is still open. In- this context, the cavity pulling has drawn a lot of attention. Today, to our knowledge, 4...term maser frequency drift associated with the cavity pulling is a well known subject due to the high level of -precision obtainable in principle by...microprocessors. The frequency pulling due to microwave AM = =1:transitions (Ramsey pulling ) has been analyzed and shown to be important. Status of

High-Precision Attitude Estimation Method of Star Sensors and Gyro Based on Complementary Filter and Unscented Kalman Filter

NASA Astrophysics Data System (ADS)

Guo, C.; Tong, X.; Liu, S.; Liu, S.; Lu, X.; Chen, P.; Jin, Y.; Xie, H.

2017-07-01

Determining the attitude of satellite at the time of imaging then establishing the mathematical relationship between image points and ground points is essential in high-resolution remote sensing image mapping. Star tracker is insensitive to the high frequency attitude variation due to the measure noise and satellite jitter, but the low frequency attitude motion can be determined with high accuracy. Gyro, as a short-term reference to the satellite's attitude, is sensitive to high frequency attitude change, but due to the existence of gyro drift and integral error, the attitude determination error increases with time. Based on the opposite noise frequency characteristics of two kinds of attitude sensors, this paper proposes an on-orbit attitude estimation method of star sensors and gyro based on Complementary Filter (CF) and Unscented Kalman Filter (UKF). In this study, the principle and implementation of the proposed method are described. First, gyro attitude quaternions are acquired based on the attitude kinematics equation. An attitude information fusion method is then introduced, which applies high-pass filtering and low-pass filtering to the gyro and star tracker, respectively. Second, the attitude fusion data based on CF are introduced as the observed values of UKF system in the process of measurement updating. The accuracy and effectiveness of the method are validated based on the simulated sensors attitude data. The obtained results indicate that the proposed method can suppress the gyro drift and measure noise of attitude sensors, improving the accuracy of the attitude determination significantly, comparing with the simulated on-orbit attitude and the attitude estimation results of the UKF defined by the same simulation parameters.

Colonizing genetic populations as units of regulated change

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harding, J.

1973-01-01

The interrelationships among natural selection, inbreeding, and genetic drift are reviewed with emphasis on colonization. Genetic variation at four loci in Lupinus succulentus exists in samples taken from California. A mathematical model was developed, and estimators were derived for gene frequency, heterozygote frequency, rate of cross-fertilization, and a coefficient of inbreeding. These parameters were estimated for 29 populations. The results indicate that (1) variation is nearly always present for the S/s locus affecting seed pigmentation, but generally absent for the three loci affecting flower pigmentation; (2) variation is not reduced in populations from recently colonized sites; (3) self-fertilization ranges frommore » nearly 0 to nearly 100%, with mean near 0.50; and, (4) inbreeding coefficients vary from 0 to 0.80, with mean near 0.40. The results do not suggest that man's disturbance of the environment has had any deleterious effect on the genetic structure of Lupinus succulentus populations. On the contrary, this species has been an opportunistic colonizer of these new habitats. However, Lupinus succulentus was chosen for study because it has been a successsful colonizer. These conclusions, if general at all, therefore, apply to successful colonizing species and not to those that cannot adapt to environmental disturbances and are now threatened with extinction.« less

Superburst oscillations: ocean and crustal modes excited by carbon-triggered type I X-ray bursts

NASA Astrophysics Data System (ADS)

Chambers, F. R. N.; Watts, A. L.; Cavecchi, Y.; Garcia, F.; Keek, L.

2018-07-01

Accreting neutron stars (NS) can exhibit high frequency modulations in their light curves during thermonuclear X-ray bursts, known as burst oscillations. The frequencies can be offset from the spin frequency of the NS by several Hz, and can drift by 1-3 Hz. One possible explanation is a mode in the bursting ocean, the frequency of which would decrease (in the rotating frame) as the burst cools, hence explaining the drifts. Most burst oscillations have been observed during the H/He-triggered bursts; however there has been one observation of oscillations during a superburst; hours long Type I X-ray bursts caused by unstable carbon burning deeper in the ocean. This paper calculates the frequency evolution of an oceanic r mode during a superburst. The rotating frame frequency varies during the burst from 4-14 Hz and is sensitive to the background parameters, in particular the temperature of the ocean and ignition depth. This calculation is compared to the superburst oscillations observed on 4U-1636-536. The predicted mode frequencies (˜10 Hz) would require a spin frequency of ˜592 Hz to match observations; 6 Hz higher than the spin inferred from an oceanic r-mode model for the H/He-triggered burst oscillations. This model also overpredicts the frequency drift during the superburst by 90 per cent.

Superburst oscillations: ocean and crustal modes excited by Carbon-triggered Type I X-ray bursts

NASA Astrophysics Data System (ADS)

Chambers, F. R. N.; Watts, A. L.; Cavecchi, Y.; Garcia, F.; Keek, L.

2018-04-01

Accreting neutron stars (NS) can exhibit high frequency modulations in their lightcurves during thermonuclear X-ray bursts, known as burst oscillations. The frequencies can be offset from the spin frequency of the NS by several Hz, and can drift by 1-3 Hz. One possible explanation is a mode in the bursting ocean, the frequency of which would decrease (in the rotating frame) as the burst cools, hence explaining the drifts. Most burst oscillations have been observed during H/He triggered bursts, however there has been one observation of oscillations during a superburst; hours' long Type I X-ray bursts caused by unstable carbon burning deeper in the ocean. This paper calculates the frequency evolution of an oceanic r-mode during a superburst. The rotating frame frequency varies during the burst from 4 - 14 Hz, and is sensitive to the background parameters, in particular the temperature of the ocean and ignition depth. This calculation is compared to the superburst oscillations observed on 4U-1636-536. The predicted mode frequencies (˜10 Hz) would require a spin frequency of ˜592 Hz to match observations; 6 Hz higher than the spin inferred from an oceanic r-mode model for the H/He triggered burst oscillations. This model also over-predicts the frequency drift during the superburst by 90%.

Model reduction and frequency residuals for a robust estimation of nonlinearities in subspace identification

NASA Astrophysics Data System (ADS)

De Filippis, G.; Noël, J. P.; Kerschen, G.; Soria, L.; Stephan, C.

2017-09-01

The introduction of the frequency-domain nonlinear subspace identification (FNSI) method in 2013 constitutes one in a series of recent attempts toward developing a realistic, first-generation framework applicable to complex structures. If this method showed promising capabilities when applied to academic structures, it is still confronted with a number of limitations which needs to be addressed. In particular, the removal of nonphysical poles in the identified nonlinear models is a distinct challenge. In the present paper, it is proposed as a first contribution to operate directly on the identified state-space matrices to carry out spurious pole removal. A modal-space decomposition of the state and output matrices is examined to discriminate genuine from numerical poles, prior to estimating the extended input and feedthrough matrices. The final state-space model thus contains physical information only and naturally leads to nonlinear coefficients free of spurious variations. Besides spurious variations due to nonphysical poles, vibration modes lying outside the frequency band of interest may also produce drifts of the nonlinear coefficients. The second contribution of the paper is to include residual terms, accounting for the existence of these modes. The proposed improved FNSI methodology is validated numerically and experimentally using a full-scale structure, the Morane-Saulnier Paris aircraft.

Radio Spectral Imaging of Reflective MHD Waves during the Impulsive Phase of a Solar Flare

NASA Astrophysics Data System (ADS)

Yu, S.; Chen, B.; Reeves, K.

2017-12-01

We report a new type of coherent radio bursts observed by the Karl G. Jansky Very Large Array (VLA) in 1-2 GHz during the impulsive phase of a two-ribbon flare on 2014 November 1, which we interpret as MHD waves reflected near the footpoint of flaring loops. In the dynamic spectrum, this burst starts with a positive frequency drift toward higher frequencies until it slows down near its highest-frequency boundary. Then it turns over and drifts toward lower frequencies. The frequency drift rate in its descending and ascending branch is between 50-150 MHz/s, which is much slower than type III radio bursts associated with fast electron beams but close to the well-known intermediate drift bursts, or fiber bursts, which are usually attributed to propagating whistler or Alfvenic waves. Thanks to VLA's unique capability of imaging with spectrometer-like temporal and spectral resolution (50 ms and 2 MHz), we are able to obtain an image of the radio source at every time and frequency in the dynamic spectrum where the burst is present and trace its spatial evolution. From the imaging results, we find that the radio source firstly moves downward toward one of the flaring ribbons before it "bounces off" at the lowest height (corresponding to the turnover frequency in the dynamic spectrum) and moves upward again. The measured speed in projection is at the order of 1-2 Mm/s, which is characteristic of Alfvenic or fast-mode MHD waves in the low corona. We conclude that the radio burst is emitted by trapped nonthermal electrons in the flaring loop carried along by a large-scale MHD wave. The waves are probably launched during the eruption of a magnetic flux rope in the flare impulsive phase.

System for adjusting frequency of electrical output pulses derived from an oscillator

DOEpatents

Bartholomew, David B.

2006-11-14

A system for setting and adjusting a frequency of electrical output pulses derived from an oscillator in a network is disclosed. The system comprises an accumulator module configured to receive pulses from an oscillator and to output an accumulated value. An adjustor module is configured to store an adjustor value used to correct local oscillator drift. A digital adder adds values from the accumulator module to values stored in the adjustor module and outputs their sums to the accumulator module, where they are stored. The digital adder also outputs an electrical pulse to a logic module. The logic module is in electrical communication with the adjustor module and the network. The logic module may change the value stored in the adjustor module to compensate for local oscillator drift or change the frequency of output pulses. The logic module may also keep time and calculate drift.

Laser beat wave excitation of terahertz radiation in a plasma slab

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chauhan, Santosh; Parashar, Jetendra, E-mail: j.p.parashar@gmail.com

2014-10-15

Terahertz (THz) radiation generation by nonlinear mixing of lasers, obliquely incident on a plasma slab is investigated. Two cases are considered: (i) electron density profile is parabolic but density peak is below the critical density corresponding to the beat frequency, (ii) plasma boundaries are sharp and density is uniform. In both cases, nonlinearity arises through the ponderomotive force that gives rise to electron drift at the beat frequency. In the case of inhomogeneous plasma, non zero curl of the nonlinear current density gives rise to electromagnetic THz generation. In case of uniform plasma, the sharp density variation at the plasmamore » boundaries leads to radiation generation. In a slab width of less than a terahertz wavelength, plasma density one fourth of terahertz critical density, laser intensities ∼10{sup 17 }W/cm{sup 2} at 1 μm, one obtains the THz intensity ∼1 GW/cm{sup 2} at 3 THz radiation frequency.« less

Perceived Annoyance to Noise Produced by a Distributed Electric Propulsion High Lift System

NASA Technical Reports Server (NTRS)

Palumbo, Dan; Rathsam, Jonathan; Christian, Andrew; Rafaelof, Menachem

2016-01-01

Results of a psychoacoustic test performed to understand the relative annoyance to noise produced by several configurations of a distributed electric propulsion high lift system are given. It is found that the number of propellers in the system is a major factor in annoyance perception. This is an intuitive result as annoyance increases, in general, with frequency, and, the blade passage frequency of the propellers increases with the number of propellers. Additionally, the data indicate that having some variation in the blade passage frequency from propeller-to-propeller is beneficial as it reduces the high tonality generated when all the propellers are spinning in synchrony at the same speed. The propellers can be set to spin at different speeds, but it was found that allowing the motor controllers to drift within 1% of nominal settings produced the best results (lowest overall annoyance). The methodology employed has been demonstrated to be effective in providing timely feedback to designers in the early stages of design development.

Light beam frequency comb generator

DOEpatents

Priatko, G.J.; Kaskey, J.A.

1992-11-24

A light beam frequency comb generator uses an acousto-optic modulator to generate a plurality of light beams with frequencies which are uniformly separated and possess common noise and drift characteristics. A well collimated monochromatic input light beam is passed through this modulator to produce a set of both frequency shifted and unshifted optical beams. An optical system directs one or more frequency shifted beams along a path which is parallel to the path of the input light beam such that the frequency shifted beams are made incident on the modulator proximate to but separated from the point of incidence of the input light beam. After the beam is thus returned to and passed through the modulator repeatedly, a plurality of mutually parallel beams are generated which are frequency-shifted different numbers of times and possess common noise and drift characteristics. 2 figs.

Light beam frequency comb generator

DOEpatents

Priatko, Gordon J.; Kaskey, Jeffrey A.

1992-01-01

A light beam frequency comb generator uses an acousto-optic modulator to generate a plurality of light beams with frequencies which are uniformly separated and possess common noise and drift characteristics. A well collimated monochromatic input light beam is passed through this modulator to produce a set of both frequency shifted and unshifted optical beams. An optical system directs one or more frequency shifted beams along a path which is parallel to the path of the input light beam such that the frequency shifted beams are made incident on the modulator proximate to but separated from the point of incidence of the input light beam. After the beam is thus returned to and passed through the modulator repeatedly, a plurality of mutually parallel beams are generated which are frequency-shifted different numbers of times and possess common noise and drift characteristics.

On the Nocturnal Downward and Westward Equatorial Ionospheric Plasma Drifts During the 17 March 2015 Geomagnetic Storm

NASA Astrophysics Data System (ADS)

Bagiya, Mala S.; Vichare, Geeta; Sinha, A. K.; Sripathi, S.

2018-02-01

During quiet period, the nocturnal equatorial ionospheric plasma drifts eastward in the zonal direction and downward in the vertical direction. This quiet time drift pattern could be understood through dynamo processes in the nighttime equatorial ionosphere. The present case study reports the nocturnal simultaneous occurrence of the vertically downward and zonally westward plasma drifts over the Indian latitudes during the geomagnetic storm of 17 March 2015. After 17:00 UT ( 22:10 local time), the vertical plasma drift became downward and coincided with the westward zonal drift, a rarely observed feature of low latitude plasma drifts. The vertical drift turned upward after 18:00 UT, while the zonal drift became eastward. We mainly emphasize here the distinct bipolar type variations of vertical and zonal plasma drifts observed around 18:00 UT. We explain the vertical plasma drift in terms of the competing effects between the storm time prompt penetration and disturbance dynamo electric fields. Whereas, the westward drift is attributed to the storm time local electrodynamical changes mainly through the disturbance dynamo field in addition to the vertical Pedersen current arising from the spatial (longitudinal) gradient of the field aligned Pedersen conductivity.

What explains rare and conspicuous colours in a snail? A test of time-series data against models of drift, migration or selection.

PubMed

Johannesson, K; Butlin, R K

2017-01-01

It is intriguing that conspicuous colour morphs of a prey species may be maintained at low frequencies alongside cryptic morphs. Negative frequency-dependent selection by predators using search images ('apostatic selection') is often suggested without rejecting alternative explanations. Using a maximum likelihood approach we fitted predictions from models of genetic drift, migration, constant selection, heterozygote advantage or negative frequency-dependent selection to time-series data of colour frequencies in isolated populations of a marine snail (Littorina saxatilis), re-established with perturbed colour morph frequencies and followed for >20 generations. Snails of conspicuous colours (white, red, banded) are naturally rare in the study area (usually <10%) but frequencies were manipulated to levels of ~50% (one colour per population) in 8 populations at the start of the experiment in 1992. In 2013, frequencies had declined to ~15-45%. Drift alone could not explain these changes. Migration could not be rejected in any population, but required rates much higher than those recorded. Directional selection was rejected in three populations in favour of balancing selection. Heterozygote advantage and negative frequency-dependent selection could not be distinguished statistically, although overall the results favoured the latter. Populations varied idiosyncratically as mild or variable colour selection (3-11%) interacted with demographic stochasticity, and the overall conclusion was that multiple mechanisms may contribute to maintaining the polymorphisms.

Radio Frequency Plasma Discharge Lamps for Use as Stable Calibration Light Sources

NASA Technical Reports Server (NTRS)

McAndrew, Brendan; Cooper, John; Arecchi, Angelo; McKee, Greg; Durell, Christopher

2012-01-01

Stable high radiance in visible and near-ultraviolet wavelengths is desirable for radiometric calibration sources. In this work, newly available electrodeless radio-frequency (RF) driven plasma light sources were combined with research grade, low-noise power supplies and coupled to an integrating sphere to produce a uniform radiance source. The stock light sources consist of a 28 VDC power supply, RF driver, and a resonant RF cavity. The RF cavity includes a small bulb with a fill gas that is ionized by the electric field and emits light. This assembly is known as the emitter. The RF driver supplies a source of RF energy to the emitter. In commercial form, embedded electronics within the RF driver perform a continual optimization routine to maximize energy transfer to the emitter. This optimization routine continually varies the light output sinusoidally by approximately 2% over a several-second period. Modifying to eliminate this optimization eliminates the sinusoidal variation but allows the output to slowly drift over time. This drift can be minimized by allowing sufficient warm-up time to achieve thermal equilibrium. It was also found that supplying the RF driver with a low-noise source of DC electrical power improves the stability of the lamp output. Finally, coupling the light into an integrating sphere reduces the effect of spatial fluctuations, and decreases noise at the output port of the sphere.

Influence of tungsten fiber’s slow drift on the measurement of G with angular acceleration method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Jie; Wu, Wei-Huang; Zhan, Wen-Ze

In the measurement of the gravitational constant G with angular acceleration method, the equilibrium position of torsion pendulum with tungsten fiber undergoes a linear slow drift, which results in a quadratic slow drift on the angular velocity of the torsion balance turntable under feedback control unit. The accurate amplitude determination of the useful angular acceleration signal with known frequency is biased by the linear slow drift and the coupling effect of the drifting equilibrium position and the room fixed gravitational background signal. We calculate the influences of the linear slow drift and the complex coupling effect on the value ofmore » G, respectively. The result shows that the bias of the linear slow drift on G is 7 ppm, and the influence of the coupling effect is less than 1 ppm.« less

Influence of tungsten fiber's slow drift on the measurement of G with angular acceleration method.

PubMed

Luo, Jie; Wu, Wei-Huang; Xue, Chao; Shao, Cheng-Gang; Zhan, Wen-Ze; Wu, Jun-Fei; Milyukov, Vadim

2016-08-01

In the measurement of the gravitational constant G with angular acceleration method, the equilibrium position of torsion pendulum with tungsten fiber undergoes a linear slow drift, which results in a quadratic slow drift on the angular velocity of the torsion balance turntable under feedback control unit. The accurate amplitude determination of the useful angular acceleration signal with known frequency is biased by the linear slow drift and the coupling effect of the drifting equilibrium position and the room fixed gravitational background signal. We calculate the influences of the linear slow drift and the complex coupling effect on the value of G, respectively. The result shows that the bias of the linear slow drift on G is 7 ppm, and the influence of the coupling effect is less than 1 ppm.

Influence of tungsten fiber's slow drift on the measurement of G with angular acceleration method

NASA Astrophysics Data System (ADS)

Luo, Jie; Wu, Wei-Huang; Xue, Chao; Shao, Cheng-Gang; Zhan, Wen-Ze; Wu, Jun-Fei; Milyukov, Vadim

2016-08-01

In the measurement of the gravitational constant G with angular acceleration method, the equilibrium position of torsion pendulum with tungsten fiber undergoes a linear slow drift, which results in a quadratic slow drift on the angular velocity of the torsion balance turntable under feedback control unit. The accurate amplitude determination of the useful angular acceleration signal with known frequency is biased by the linear slow drift and the coupling effect of the drifting equilibrium position and the room fixed gravitational background signal. We calculate the influences of the linear slow drift and the complex coupling effect on the value of G, respectively. The result shows that the bias of the linear slow drift on G is 7 ppm, and the influence of the coupling effect is less than 1 ppm.

Spatial variations in mortality in pelagic early life stages of a marine fish (Gadus morhua)

NASA Astrophysics Data System (ADS)

Langangen, Øystein; Stige, Leif C.; Yaragina, Natalia A.; Ottersen, Geir; Vikebø, Frode B.; Stenseth, Nils Chr.

2014-09-01

Mortality of pelagic eggs and larvae of marine fish is often assumed to be constant both in space and time due to lacking information. This may, however, be a gross oversimplification, as early life stages are likely to experience large variations in mortality both in time and space. In this paper we develop a method for estimating the spatial variability in mortality of eggs and larvae. The method relies on survey data and physical-biological particle-drift models to predict the drift of ichthyoplankton. Furthermore, the method was used to estimate the spatially resolved mortality field in the egg and larval stages of Barents Sea cod (Gadus morhua). We analyzed data from the Barents Sea for the period between 1959 and 1993 when there are two surveys available: a spring and a summer survey. An individual-based physical-biological particle-drift model, tailored to the egg and larval stages of Barents Sea cod, was used to predict the drift trajectories from the observed stage-specific distributions in spring to the time of observation in the summer, a drift time of approximately 45 days. We interpreted the spatial patterns in the differences between the predicted and observed abundance distributions in summer as reflecting the spatial patterns in mortality over the drift period. Using the estimated mortality fields, we show that the spatial variations in mortality might have a significant impact on survival to later life stages and we suggest that there may be trade-offs between increased early survival in off shore regions and reduced probability of ending up in the favorable nursing grounds in the Barents Sea. In addition, we show that accounting for the estimated mortality field, improves the correlation between a simulated recruitment index and observation-based indices of juvenile abundance.

Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y

PubMed Central

2017-01-01

ABSTRACT RNA viruses are one of the fastest-evolving biological entities. Within their hosts, they exist as genetically diverse populations (i.e., viral mutant swarms), which are sculpted by different evolutionary mechanisms, such as mutation, natural selection, and genetic drift, and also the interactions between genetic variants within the mutant swarms. To elucidate the mechanisms that modulate the population diversity of an important plant-pathogenic virus, we performed evolution experiments with Potato virus Y (PVY) in potato genotypes that differ in their defense response against the virus. Using deep sequencing of small RNAs, we followed the temporal dynamics of standing and newly generated variations in the evolving viral lineages. A time-sampled approach allowed us to (i) reconstruct theoretical haplotypes in the starting population by using clustering of single nucleotide polymorphisms' trajectories and (ii) use quantitative population genetics approaches to estimate the contribution of selection and genetic drift, and their interplay, to the evolution of the virus. We detected imprints of strong selective sweeps and narrow genetic bottlenecks, followed by the shift in frequency of selected haplotypes. Comparison of patterns of viral evolution in differently susceptible host genotypes indicated possible diversifying evolution of PVY in the less-susceptible host (efficient in the accumulation of salicylic acid). IMPORTANCE High diversity of within-host populations of RNA viruses is an important aspect of their biology, since they represent a reservoir of genetic variants, which can enable quick adaptation of viruses to a changing environment. This study focuses on an important plant virus, Potato virus Y, and describes, at high resolution, temporal changes in the structure of viral populations within different potato genotypes. A novel and easy-to-implement computational approach was established to cluster single nucleotide polymorphisms into viral haplotypes from very short sequencing reads. During the experiment, a shift in the frequency of selected viral haplotypes was observed after a narrow genetic bottleneck, indicating an important role of the genetic drift in the evolution of the virus. On the other hand, a possible case of diversifying selection of the virus was observed in less susceptible host genotypes. PMID:28592544

Neoclassical toroidal plasma viscosity in the vicinity of the magnetic axis in tokamaks with broken symmetry

NASA Astrophysics Data System (ADS)

Shaing, K. C.; Lee, H.; Seol, J.; Aydemir, A. Y.

2015-08-01

Theory for neoclassical toroidal plasma viscosity in the low collisionality regime is extended to the vicinity of the magnetic axis in tokamaks with broken symmetry. The toroidal viscosity is induced by particles drifting off the perturbed magnetic surface under the influence of the symmetry breaking magnetic field. In the region away from the magnetic axis, the drift orbit dynamics is governed by the bounce averaged drift kinetic equation in the low collisionality regimes. In the vicinity of the magnetic axis, it is the drift kinetic equation, averaged over the trapped particle orbits, i.e., potato orbits, that governs the drift dynamics. The orbit averaged drift kinetic equation is derived when collision frequency is low enough for trapped particles to complete their potato trajectories. The resultant equation is solved in the 1 /ν regime to obtain transport fluxes and, thus, toroidal plasma viscosity through flux-force relation. Here, ν is the collision frequency. The viscosity does not vanish on the magnetic axis, and has the same scalings as that in the region away from magnetic axis, except that the fraction of bananas is replaced by the fraction of potatoes. It also has a weak radial dependence. Modeling of plasma flow velocity V for the case where the magnetic surfaces are broken is also discussed.

DNA Dispose, but Subjects Decide. Learning and the Extended Synthesis.

PubMed

Lindholm, Markus

Adaptation by means of natural selection depends on the ability of populations to maintain variation in heritable traits. According to the Modern Synthesis this variation is sustained by mutations and genetic drift. Epigenetics, evodevo, niche construction and cultural factors have more recently been shown to contribute to heritable variation, however, leading an increasing number of biologists to call for an extended view of speciation and evolution. An additional common feature across the animal kingdom is learning, defined as the ability to change behavior according to novel experiences or skills. Learning constitutes an additional source for phenotypic variation, and change in behavior may induce long lasting shifts in fitness, and hence favor evolutionary novelties. Based on published studies, I demonstrate how learning about food, mate choice and habitats has contributed substantially to speciation in the canonical story of Darwin's finches on the Galapagos Islands. Learning cannot be reduced to genetics, because it demands decisions, which requires a subject. Evolutionary novelties may hence emerge both from shifts in allelic frequencies and from shifts in learned, subject driven behavior. The existence of two principally different sources of variation also prevents the Modern Synthesis from self-referring explanations.

The Effect of Amplifier Bias Drift on Differential Magnitude Estimation in Multiple-Star Systems

NASA Astrophysics Data System (ADS)

Tyler, David W.; Muralimanohar, Hariharan; Borelli, Kathy J.

2007-02-01

We show how the temporal drift of CCD amplifier bias can cause significant relative magnitude estimation error in speckle interferometric observations of multiple-star systems. When amplifier bias varies over time, the estimation error arises if the time between acquisition of dark-frame calibration data and science data is long relative to the timescale over which the bias changes. Using analysis, we show that while detector-temperature drift over time causes a variation in accumulated dark current and a residual bias in calibrated imagery, only amplifier bias variations cause a residual bias in the estimated energy spectrum. We then use telescope data taken specifically to investigate this phenomenon to show that for the detector used, temporal bias drift can cause residual energy spectrum bias as large or larger than the mean value of the noise energy spectrum. Finally, we use a computer simulation to demonstrate the effect of residual bias on differential magnitude estimation. A supplemental calibration technique is described in the appendices.

Allele Surfing Promotes Microbial Adaptation from Standing Variation

PubMed Central

Gralka, Matti; Stiewe, Fabian; Farrell, Fred; Möbius, Wolfram; Waclaw, Bartek; Hallatschek, Oskar

2016-01-01

The coupling of ecology and evolution during range expansions enables mutations to establish at expanding range margins and reach high frequencies. This phenomenon, called allele surfing, is thought to have caused revolutions in the gene pool of many species, most evidently in microbial communities. It has remained unclear, however, under which conditions allele surfing promotes or hinders adaptation. Here, using microbial experiments and simulations, we show that, starting with standing adaptive variation, range expansions generate a larger increase in mean fitness than spatially uniform population expansions. The adaptation gain results from ‘soft’ selective sweeps emerging from surfing beneficial mutations. The rate of these surfing events is shown to sensitively depend on the strength of genetic drift, which varies among strains and environmental conditions. More generally, allele surfing promotes the rate of adaptation per biomass produced, which could help developing biofilms and other resource-limited populations to cope with environmental challenges. PMID:27307400

A baseline drift detrending technique for fast scan cyclic voltammetry.

PubMed

DeWaele, Mark; Oh, Yoonbae; Park, Cheonho; Kang, Yu Min; Shin, Hojin; Blaha, Charles D; Bennet, Kevin E; Kim, In Young; Lee, Kendall H; Jang, Dong Pyo

2017-11-06

Fast scan cyclic voltammetry (FSCV) has been commonly used to measure extracellular neurotransmitter concentrations in the brain. Due to the unstable nature of the background currents inherent in FSCV measurements, analysis of FSCV data is limited to very short amounts of time using traditional background subtraction. In this paper, we propose the use of a zero-phase high pass filter (HPF) as the means to remove the background drift. Instead of the traditional method of low pass filtering across voltammograms to increase the signal to noise ratio, a HPF with a low cutoff frequency was applied to the temporal dataset at each voltage point to remove the background drift. As a result, the HPF utilizing cutoff frequencies between 0.001 Hz and 0.01 Hz could be effectively used to a set of FSCV data for removing the drifting patterns while preserving the temporal kinetics of the phasic dopamine response recorded in vivo. In addition, compared to a drift removal method using principal component analysis, this was found to be significantly more effective in reducing the drift (unpaired t-test p < 0.0001, t = 10.88) when applied to data collected from Tris buffer over 24 hours although a drift removal method using principal component analysis also showed the effective background drift reduction. The HPF was also applied to 5 hours of FSCV in vivo data. Electrically evoked dopamine peaks, observed in the nucleus accumbens, were clearly visible even without background subtraction. This technique provides a new, simple, and yet robust, approach to analyse FSCV data with an unstable background.

Two systems analyses of SETI. [microwave Search for Extra-Terrestrial Intelligence

NASA Technical Reports Server (NTRS)

Machol, R. E.

1976-01-01

The problem of receiving and identifying a single microwave signal transmitted by extraterrestrial intelligent beings is analyzed in the cases where the signal is designed to catch our attention and the signal is designed for internal purposes of another civilization. Six variables which yield uncertainty as to the exact signal which should be searched for are described: polarization, modulation, flux level, direction, frequency (including bandwidth and drift rate), and time. It is shown that if all reasonable variations of these parameters are to be examined sequentially for 1000 seconds, the search would take over a million times longer than the age of the Universe. Ways to simplify the search are considered, including widening the frequency bin, selecting specific targets, cutting the observation time, using a Fourier transform device for data processing, and building larger antennas as well as better low-noise receivers.

Toll-like receptor variation in the bottlenecked population of the Seychelles warbler: computer simulations see the 'ghost of selection past' and quantify the 'drift debt'.

PubMed

Gilroy, D L; Phillips, K P; Richardson, D S; van Oosterhout, C

2017-07-01

Balancing selection can maintain immunogenetic variation within host populations, but detecting its signal in a postbottlenecked population is challenging due to the potentially overriding effects of drift. Toll-like receptor genes (TLRs) play a fundamental role in vertebrate immune defence and are predicted to be under balancing selection. We previously characterized variation at TLR loci in the Seychelles warbler (Acrocephalus sechellensis), an endemic passerine that has undergone a historical bottleneck. Five of seven TLR loci were polymorphic, which is in sharp contrast to the low genomewide variation observed. However, standard population genetic statistical methods failed to detect a contemporary signature of selection at any TLR locus. We examined whether the observed TLR polymorphism could be explained by neutral evolution, simulating the population's demography in the software DIYABC. This showed that the posterior distributions of mutation rates had to be unrealistically high to explain the observed genetic variation. We then conducted simulations with an agent-based model using typical values for the mutation rate, which indicated that weak balancing selection has acted on the three TLR genes. The model was able to detect evidence of past selection elevating TLR polymorphism in the prebottleneck populations, but was unable to discern any effects of balancing selection in the contemporary population. Our results show drift is the overriding evolutionary force that has shaped TLR variation in the contemporary Seychelles warbler population, and the observed TLR polymorphisms might be merely the 'ghost of selection past'. Forecast models predict immunogenetic variation in this species will continue to be eroded in the absence of contemporary balancing selection. Such 'drift debt' occurs when a gene pool has not yet reached its new equilibrium level of polymorphism, and this loss could be an important threat to many recently bottlenecked populations. © 2017 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2017 European Society For Evolutionary Biology.

Electromagnetic drift waves dispersion for arbitrarily collisional plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Wonjae, E-mail: wol023@ucsd.edu; Krasheninnikov, Sergei I., E-mail: skrash@mae.ucsd.edu; Angus, J. R.

2015-07-15

The impacts of the electromagnetic effects on resistive and collisionless drift waves are studied. A local linear analysis on an electromagnetic drift-kinetic equation with Bhatnagar-Gross-Krook-like collision operator demonstrates that the model is valid for describing linear growth rates of drift wave instabilities in a wide range of plasma parameters showing convergence to reference models for limiting cases. The wave-particle interactions drive collisionless drift-Alfvén wave instability in low collisionality and high beta plasma regime. The Landau resonance effects not only excite collisionless drift wave modes but also suppress high frequency electron inertia modes observed from an electromagnetic fluid model in collisionlessmore » and low beta regime. Considering ion temperature effects, it is found that the impact of finite Larmor radius effects significantly reduces the growth rate of the drift-Alfvén wave instability with synergistic effects of high beta stabilization and Landau resonance.« less

Relating the Hadamard Variance to MCS Kalman Filter Clock Estimation

NASA Technical Reports Server (NTRS)

Hutsell, Steven T.

1996-01-01

The Global Positioning System (GPS) Master Control Station (MCS) currently makes significant use of the Allan Variance. This two-sample variance equation has proven excellent as a handy, understandable tool, both for time domain analysis of GPS cesium frequency standards, and for fine tuning the MCS's state estimation of these atomic clocks. The Allan Variance does not explicitly converge for the nose types of alpha less than or equal to minus 3 and can be greatly affected by frequency drift. Because GPS rubidium frequency standards exhibit non-trivial aging and aging noise characteristics, the basic Allan Variance analysis must be augmented in order to (a) compensate for a dynamic frequency drift, and (b) characterize two additional noise types, specifically alpha = minus 3, and alpha = minus 4. As the GPS program progresses, we will utilize a larger percentage of rubidium frequency standards than ever before. Hence, GPS rubidium clock characterization will require more attention than ever before. The three sample variance, commonly referred to as a renormalized Hadamard Variance, is unaffected by linear frequency drift, converges for alpha is greater than minus 5, and thus has utility for modeling noise in GPS rubidium frequency standards. This paper demonstrates the potential of Hadamard Variance analysis in GPS operations, and presents an equation that relates the Hadamard Variance to the MCS's Kalman filter process noises.

Planar varactor frequency multiplier devices with blocking barrier

NASA Technical Reports Server (NTRS)

Lieneweg, Udo (Inventor); Frerking, Margaret A. (Inventor); Maserjian, Joseph (Inventor)

1994-01-01

The invention relates to planar varactor frequency multiplier devices with a heterojunction blocking barrier for near millimeter wave radiation of moderate power from a fundamental input wave. The space charge limitation of the submillimeter frequency multiplier devices of the BIN(sup +) type is overcome by a diode structure comprising an n(sup +) doped layer of semiconductor material functioning as a low resistance back contact, a layer of semiconductor material with n-type doping functioning as a drift region grown on the back contact layer, a delta doping sheet forming a positive charge at the interface of the drift region layer with a barrier layer, and a surface metal contact. The layers thus formed on an n(sup +) doped layer may be divided into two isolated back-to-back BNN(sup +) diodes by separately depositing two surface metal contacts. By repeating the sequence of the drift region layer and the barrier layer with the delta doping sheet at the interfaces between the drift and barrier layers, a plurality of stacked diodes is formed. The novelty of the invention resides in providing n-type semiconductor material for the drift region in a GaAs/AlGaAs structure, and in stacking a plurality of such BNN(sup +) diodes stacked for greater output power with and connected back-to-back with the n(sup +) GaAs layer as an internal back contact and separate metal contact over an AlGaAs barrier layer on top of each stack.

Detecting drift bias and exposure errors in solar and photosynthetically active radiation data

USDA-ARS?s Scientific Manuscript database

All-black thermopile pyranometers are commonly used to measure solar radiation. Ensuring that the sensors are stable and free of drift is critical to accurately measure small variations in global solar irradiance (K'), which is a potential driver of changes in surface temperature. We demonstrate tha...

Variable Temperature Infrared Spectroscopy Investigations of Benzoic Acid Desorption from Sodium and Calcium Montmorillonite Clays.

PubMed

Nickels, Tara M; Ingram, Audrey L; Maraoulaite, Dalia K; White, Robert L

2015-12-01

Processes involved in thermal desorption of benzoic acid from sodium and calcium montmorillonite clays are investigated by using variable temperature diffuse reflection Fourier transform infrared spectroscopy (DRIFTS). By monitoring the temperature dependence of infrared absorbance bands while heating samples, subtle changes in molecular vibrations are detected and employed to characterize specific benzoic acid adsorption sites. Abrupt changes in benzoic acid adsorption site properties occur for both clay samples at about 125 °C. Difference spectra absorbance band frequency variations indicate that adsorbed benzoic acid interacts with interlayer cations through water bridges and that these interactions can be disrupted by the presence of organic anions, in particular, benzoate.

Drift waves, intense parallel electric fields, and turbulence associated with asymmetric magnetic reconnection at the magnetopause

NASA Astrophysics Data System (ADS)

Ergun, R. E.; Chen, L.-J.; Wilder, F. D.; Ahmadi, N.; Eriksson, S.; Usanova, M. E.; Goodrich, K. A.; Holmes, J. C.; Sturner, A. P.; Malaspina, D. M.; Newman, D. L.; Torbert, R. B.; Argall, M. R.; Lindqvist, P.-A.; Burch, J. L.; Webster, J. M.; Drake, J. F.; Price, L.; Cassak, P. A.; Swisdak, M.; Shay, M. A.; Graham, D. B.; Strangeway, R. J.; Russell, C. T.; Giles, B. L.; Dorelli, J. C.; Gershman, D.; Avanov, L.; Hesse, M.; Lavraud, B.; Le Contel, O.; Retino, A.; Phan, T. D.; Goldman, M. V.; Stawarz, J. E.; Schwartz, S. J.; Eastwood, J. P.; Hwang, K.-J.; Nakamura, R.; Wang, S.

2017-04-01

Observations of magnetic reconnection at Earth's magnetopause often display asymmetric structures that are accompanied by strong magnetic field (B) fluctuations and large-amplitude parallel electric fields (E||). The B turbulence is most intense at frequencies above the ion cyclotron frequency and below the lower hybrid frequency. The B fluctuations are consistent with a thin, oscillating current sheet that is corrugated along the electron flow direction (along the X line), which is a type of electromagnetic drift wave. Near the X line, electron flow is primarily due to a Hall electric field, which diverts ion flow in asymmetric reconnection and accompanies the instability. Importantly, the drift waves appear to drive strong parallel currents which, in turn, generate large-amplitude ( 100 mV/m) E|| in the form of nonlinear waves and structures. These observations suggest that turbulence may be common in asymmetric reconnection, penetrate into the electron diffusion region, and possibly influence the magnetic reconnection process.

Saccadic adaptation to a systematically varying disturbance.

PubMed

Cassanello, Carlos R; Ohl, Sven; Rolfs, Martin

2016-08-01

Saccadic adaptation maintains the correct mapping between eye movements and their targets, yet the dynamics of saccadic gain changes in the presence of systematically varying disturbances has not been extensively studied. Here we assessed changes in the gain of saccade amplitudes induced by continuous and periodic postsaccadic visual feedback. Observers made saccades following a sequence of target steps either along the horizontal meridian (Two-way adaptation) or with unconstrained saccade directions (Global adaptation). An intrasaccadic step-following a sinusoidal variation as a function of the trial number (with 3 different frequencies tested in separate blocks)-consistently displaced the target along its vector. The oculomotor system responded to the resulting feedback error by modifying saccade amplitudes in a periodic fashion with similar frequency of variation but lagging the disturbance by a few tens of trials. This periodic response was superimposed on a drift toward stronger hypometria with similar asymptotes and decay rates across stimulus conditions. The magnitude of the periodic response decreased with increasing frequency and was smaller and more delayed for Global than Two-way adaptation. These results suggest that-in addition to the well-characterized return-to-baseline response observed in protocols using constant visual feedback-the oculomotor system attempts to minimize the feedback error by integrating its variation across trials. This process resembles a convolution with an internal response function, whose structure would be determined by coefficients of the learning model. Our protocol reveals this fast learning process in single short experimental sessions, qualifying it for the study of sensorimotor learning in health and disease. Copyright © 2016 the American Physiological Society.

Saccadic adaptation to a systematically varying disturbance

PubMed Central

Ohl, Sven; Rolfs, Martin

2016-01-01

Saccadic adaptation maintains the correct mapping between eye movements and their targets, yet the dynamics of saccadic gain changes in the presence of systematically varying disturbances has not been extensively studied. Here we assessed changes in the gain of saccade amplitudes induced by continuous and periodic postsaccadic visual feedback. Observers made saccades following a sequence of target steps either along the horizontal meridian (Two-way adaptation) or with unconstrained saccade directions (Global adaptation). An intrasaccadic step—following a sinusoidal variation as a function of the trial number (with 3 different frequencies tested in separate blocks)—consistently displaced the target along its vector. The oculomotor system responded to the resulting feedback error by modifying saccade amplitudes in a periodic fashion with similar frequency of variation but lagging the disturbance by a few tens of trials. This periodic response was superimposed on a drift toward stronger hypometria with similar asymptotes and decay rates across stimulus conditions. The magnitude of the periodic response decreased with increasing frequency and was smaller and more delayed for Global than Two-way adaptation. These results suggest that—in addition to the well-characterized return-to-baseline response observed in protocols using constant visual feedback—the oculomotor system attempts to minimize the feedback error by integrating its variation across trials. This process resembles a convolution with an internal response function, whose structure would be determined by coefficients of the learning model. Our protocol reveals this fast learning process in single short experimental sessions, qualifying it for the study of sensorimotor learning in health and disease. PMID:27098027

Nonlinear Drift-Kinetic Equation in the Presence of a Circularly Polarized Wave

NASA Technical Reports Server (NTRS)

Khazanov, G. V.; Krivorutsky, E. N.; Whitaker, Ann F. (Technical Monitor)

2001-01-01

Equations of the single particle motion and nonlinear kinetic equation for plasma in the presence of a circularly polarized wave of arbitrary frequency in the drift approximation are presented. The nonstationarity and inhomogeneity of the plasma-wave system are taken into account.

Drift dust acoustic soliton in the presence of field-aligned sheared flow and nonextensivity effects

NASA Astrophysics Data System (ADS)

Shah, AttaUllah; Mushtaq, A.; Farooq, M.; Khan, Aurangzeb; Aman-ur-Rehman

2018-05-01

Low frequency electrostatic dust drift acoustic (DDA) waves are studied in an inhomogeneous dust magnetoplasma comprised of dust components of opposite polarity, Boltzmannian ions, and nonextensive distributed electrons. The magnetic-field-aligned dust sheared flow drives the electrostatic drift waves in the presence of ions and electrons. The sheared flow decreases or increases the frequency of the DDA wave, mostly depending on its polarity. The conditions of instability for this mode, with nonextensivity and dust streaming effects, are discussed. The nonlinear dynamics is then investigated for the DDA wave by deriving the Koeteweg-deVries (KdV) nonlinear equation. The KdV equation yields an electrostatic structure in the form of a DDA soliton. The relevancy of the work to laboratory four component dusty plasmas is illustrated.

The Effects of Population Size Histories on Estimates of Selection Coefficients from Time-Series Genetic Data

PubMed Central

Jewett, Ethan M.; Steinrücken, Matthias; Song, Yun S.

2016-01-01

Many approaches have been developed for inferring selection coefficients from time series data while accounting for genetic drift. These approaches have been motivated by the intuition that properly accounting for the population size history can significantly improve estimates of selective strengths. However, the improvement in inference accuracy that can be attained by modeling drift has not been characterized. Here, by comparing maximum likelihood estimates of selection coefficients that account for the true population size history with estimates that ignore drift by assuming allele frequencies evolve deterministically in a population of infinite size, we address the following questions: how much can modeling the population size history improve estimates of selection coefficients? How much can mis-inferred population sizes hurt inferences of selection coefficients? We conduct our analysis under the discrete Wright–Fisher model by deriving the exact probability of an allele frequency trajectory in a population of time-varying size and we replicate our results under the diffusion model. For both models, we find that ignoring drift leads to estimates of selection coefficients that are nearly as accurate as estimates that account for the true population history, even when population sizes are small and drift is high. This result is of interest because inference methods that ignore drift are widely used in evolutionary studies and can be many orders of magnitude faster than methods that account for population sizes. PMID:27550904

Response of trapped particles to a collapsing dipole moment.

NASA Technical Reports Server (NTRS)

Heckman, H. H.; Lindstrom, P. J.

1972-01-01

Particle motion in the secularly varying geomagnetic field is investigated in terms of a dipolar magnetic field with decreasing magnetic moment M. For dM/dt equal to the rate of decay of the earth's dipole component, we find there is drift in B-L space, resulting in an inward drift of particles accompanied with increased energy and unidirectional intensity. Secular variation of the geomagnetic field appears to be a dominant mechanism for radial drift in the inner radiation belt.

Macroinvertebrate short-term responses to flow variation and oxygen depletion: A mesocosm approach.

PubMed

Calapez, Ana R; Branco, Paulo; Santos, José M; Ferreira, Teresa; Hein, Thomas; Brito, António G; Feio, Maria João

2017-12-01

In Mediterranean rivers, water scarcity is a key stressor with direct and indirect effects on other stressors, such as water quality decline and inherent oxygen depletion associated with pollutants inputs. Yet, predicting the responses of macroinvertebrates to these stressors combination is quite challenging due to the reduced available information, especially if biotic and abiotic seasonal variations are taken under consideration. This study focused on the response of macroinvertebrates by drift to single and combined effects of water scarcity and dissolved oxygen (DO) depletion over two seasons (winter and spring). A factorial design of two flow velocity levels - regular and low (vL) - with three levels of oxygen depletion - normoxia, medium depletion (dM) and higher depletion (dH) - was carried out in a 5-artificial channels system, in short-term experiments. Results showed that both stressors individually and together had a significant effect on macroinvertebrate drift ratio for both seasons. Single stressor effects showed that macroinvertebrate drift decreased with flow velocity reduction and increased with DO depletion, in both winter and spring experiments. Despite single stressors opposing effects in drift ratio, combined stressors interaction (vL×dM and vL×dH) induced a positive synergistic drift effect for both seasons, but only in winter the drift ratio was different between the levels of DO depletion. Stressors interaction in winter seemed to intensify drift response when reached lower oxygen saturation. Also, drift patterns were different between seasons for all treatments, which may depend on individual's life stage and seasonal behaviour. Water scarcity seems to exacerbate the oxygen depletion conditions resulting into a greater drifting of invertebrates. The potential effects of oxygen depletion should be evaluated when addressing the impacts of water scarcity on river ecosystems, since flow reductions will likely contribute to a higher oxygen deficit, particularly in Mediterranean rivers. Copyright © 2017 Elsevier B.V. All rights reserved.

Loss of Mhc and Neutral Variation in Peary Caribou: Genetic Drift Is Not Mitigated by Balancing Selection or Exacerbated by Mhc Allele Distributions

PubMed Central

Taylor, Sabrina S.; Jenkins, Deborah A.; Arcese, Peter

2012-01-01

Theory and empirical results suggest that the rate of loss of variation at Mhc and neutral microsatellite loci may differ because selection influences Mhc genes, and because a high proportion of rare alleles at Mhc loci may result in high rates of loss via drift. Most published studies compare Mhc and microsatellite variation in various contemporary populations to infer the effects of population size on genetic variation, even though different populations are likely to have different demographic histories that may also affect contemporary genetic variation. We directly compared loss of variation at Mhc and microsatellite loci in Peary caribou by comparing historical and contemporary samples. We observed that similar proportions of genetic variation were lost over time at each type of marker despite strong evidence for selection at Mhc genes. These results suggest that microsatellites can be used to estimate genome-wide levels of variation, but also that adaptive potential is likely to be lost following population bottlenecks. However, gene conversion and recombination at Mhc loci may act to increase variation following bottlenecks. PMID:22655029

Drift paths of ions composing multiple-nose spectral structures near the inner edge of the plasma sheet

NASA Astrophysics Data System (ADS)

Ferradas, C. P.; Zhang, J.-C.; Spence, H. E.; Kistler, L. M.; Larsen, B. A.; Reeves, G.; Skoug, R.; Funsten, H.

2016-11-01

We present a case study of the H+, He+, and O+ multiple-nose structures observed by the Helium, Oxygen, Proton, and Electron instrument on board Van Allen Probe A over one complete orbit on 28 September 2013. Nose structures are observed near the inner edge of the plasma sheet and constitute the signatures of ion drift in the highly dynamic environment of the inner magnetosphere. We find that the multiple noses are intrinsically associated with variations in the solar wind. Backward ion drift path tracings show new details of the drift trajectories of these ions; i.e., multiple noses are formed by ions with a short drift time from the assumed source location to the inner region and whose trajectories (1) encircle the Earth different number of times or (2) encircle the Earth equal number of times but with different drift time, before reaching the observation site.

Magnetic Activity Dependence of the Electric Drift Below L = 3

NASA Astrophysics Data System (ADS)

Lejosne, Solène; Mozer, F. S.

2018-05-01

More than 2 years of magnetic and electric field measurements by the Van Allen Probes are analyzed with the objective of determining the average effects of magnetic activity on the electric drift below L = 3. The study finds that an increase in magnetospheric convection leads to a decrease in the magnitude of the azimuthal component of the electric drift, especially in the nightside. The amplitude of the slowdown is a function of L, magnetic local time, and Kp, in a pattern consistent with the storm time dynamics of the ionosphere and thermosphere. To a lesser extent, magnetic activity also alters the average radial component of the electric drift below L = 3. A global picture for the average variations of the electric drift with Kp is provided as a function of L and magnetic local time. It is the first time that the signature of the ionospheric disturbance dynamo is observed in near-equatorial electric drift measurements.

A Standard Law for the Equatorward Drift of the Sunspot Zones

NASA Technical Reports Server (NTRS)

Hathaway, David H.

2012-01-01

The latitudinal location of the sunspot zones in each hemisphere is determined by calculating the centroid position of sunspot areas for each solar rotation from May 1874 to June 2012. When these centroid positions are plotted and analyzed as functions of time from each sunspot cycle maximum there appears to be systematic differences in the positions and equatorward drift rates as a function of sunspot cycle amplitude. If, instead, these centroid positions are plotted and analyzed as functions of time from each sunspot cycle minimum then most of the differences in the positions and equatorward drift rates disappear. The differences that remain disappear entirely if curve fitting is used to determine the starting times (which vary by as much as 8 months from the times of minima). The sunspot zone latitudes and equatorward drift measured relative to this starting time follow a standard path for all cycles with no dependence upon cycle strength or hemispheric dominance. Although Cycle 23 was peculiar in its length and the strength of the polar fields it produced, it too shows no significant variation from this standard. This standard law, and the lack of variation with sunspot cycle characteristics, is consistent with Dynamo Wave mechanisms but not consistent with current Flux Transport Dynamo models for the equatorward drift of the sunspot zones.

Temporal Variations of Strength and Location of the South Atlantic Anomaly as Measured by RXTE

NASA Technical Reports Server (NTRS)

Wilms, Jorn; Felix, Furst; Rothschild, Richard E.; Pottschmidt, Katja; Smith, David M.; Lingenfelter, Richard

2009-01-01

The evolution of the particle background at an altitude of approx.540km during the time interval between 1996 and 2007 is studied using the particle monitor of the High Energy X-ray Timing Experiment on board NASA's Rossi X-ray Timing Explorer. A special emphasis of this study is the location and strength of the South Atlantic Anomaly (SAA). The size and strength of the SAA are anti-correlated with the the 10.7 cm radio flux of the Sun, which leads the SAA strength by approx.1 year reflecting variations in solar heating of the upper atmosphere. The location of the SAA is also found to drift westwards with an average drift rate of about 0.3deg/yr following the drift of the geomagnetic field configuration. Superimposed to this drift rate are irregularities, where the SAA suddenly moves eastwards and where furthermore the speed of the drift changes. The most prominent of these irregularities is found in the second quarter of 2003 and another event took place in 1999. We suggest that these events are previously unrecognized manifestations of the geomagnetic jerks of the Earth's magnetic field. Key words: space radiation environment, South Atlantic Anomaly, radiation monitors, Rossi X-ray Timing Explorer

Plasma Heating and Flow in an Auroral Arc

NASA Technical Reports Server (NTRS)

Moore, T. E.; Chandler, M. O.; Pollock, C. J.; Reasoner, D. L.; Arnoldy, R. L.; Austin, B.; Kintner, P. M.; Bonnell, J.

1996-01-01

We report direct observations of the three-dimensional velocity distribution of selected topside ionospheric ion species in an auroral context between 500 and 550 km altitude. We find heating transverse to the local magnetic field in the core plasma, with significant heating of 0(+), He(+), and H(+), as well as tail heating events that occur independently of the core heating. The 0(+) velocity distribution departs from bi-Maxwellian, at one point exhibiting an apparent ring-like shape. However, these observations are shown to be aliased within the auroral arc by temporal variations that arc not well-resolved by the core plasma instrument. The dc electric field measurements reveal superthermal plasma drifts that are consistent with passage of the payload through a series of vortex structures or a larger scale circularly polarized hydromagnetic wave structure within the auroral arc. The dc electric field also shows that impulsive solitary structures, with a frequency spectrum in the ion cyclotron frequency range, occur in close correlation with the tail heating events. The drift and core heating observations lend support to the idea that core ion heating is driven at low altitudes by rapid convective motions imposed by the magnetosphere. Plasma wave emissions at ion frequencies and parallel heating of the low-energy electron plasma are observed in conjunction with this auroral form; however, the conditions are much more complex than those typically invoked in previous theoretical treatments of superthermal frictional heating. The observed ion heating within the arc clearly exceeds that expected from frictional heating for the light ion species H(+) and He(+), and the core distributions also contain hot transverse tails, indicating an anomalous transverse heat source.

Balancing selection and genetic drift at major histocompatibility complex class II genes in isolated populations of golden snub-nosed monkey (Rhinopithecus roxellana)

PubMed Central

2012-01-01

Background Small, isolated populations often experience loss of genetic variation due to random genetic drift. Unlike neutral or nearly neutral markers (such as mitochondrial genes or microsatellites), major histocompatibility complex (MHC) genes in these populations may retain high levels of polymorphism due to balancing selection. The relative roles of balancing selection and genetic drift in either small isolated or bottlenecked populations remain controversial. In this study, we examined the mechanisms maintaining polymorphisms of MHC genes in small isolated populations of the endangered golden snub-nosed monkey (Rhinopithecus roxellana) by comparing genetic variation found in MHC and microsatellite loci. There are few studies of this kind conducted on highly endangered primate species. Results Two MHC genes were sequenced and sixteen microsatellite loci were genotyped from samples representing three isolated populations. We isolated nine DQA1 alleles and sixteen DQB1 alleles and validated expression of the alleles. Lowest genetic variation for both MHC and microsatellites was found in the Shennongjia (SNJ) population. Historical balancing selection was revealed at both the DQA1 and DQB1 loci, as revealed by excess non-synonymous substitutions at antigen binding sites (ABS) and maximum-likelihood-based random-site models. Patterns of microsatellite variation revealed population structure. FST outlier analysis showed that population differentiation at the two MHC loci was similar to the microsatellite loci. Conclusions MHC genes and microsatellite loci showed the same allelic richness pattern with the lowest genetic variation occurring in SNJ, suggesting that genetic drift played a prominent role in these isolated populations. As MHC genes are subject to selective pressures, the maintenance of genetic variation is of particular interest in small, long-isolated populations. The results of this study may contribute to captive breeding and translocation programs for endangered species. PMID:23083308

Dynamics of liquid films exposed to high-frequency surface vibration

NASA Astrophysics Data System (ADS)

Manor, Ofer; Rezk, Amgad R.; Friend, James R.; Yeo, Leslie Y.

2015-05-01

We derive a generalized equation that governs the spreading of liquid films under high-frequency (MHz-order) substrate vibration in the form of propagating surface waves and show that this single relationship is universally sufficient to collectively describe the rich and diverse dynamic phenomena recently observed for the transport of oil films under such substrate excitation, in particular, Rayleigh surface acoustic waves. In contrast to low-frequency (Hz- to kHz-order) vibration-induced wetting phenomena, film spreading at such high frequencies arises from convective drift generated by the viscous periodic flow localized in a region characterized by the viscous penetration depth β-1≡(2μ /ρ ω ) 1 /2 adjacent to the substrate that is invoked directly by its vibration; μ and ρ are the viscosity and the density of the liquid, respectively, and ω is the excitation frequency. This convective drift is responsible for driving the spreading of thin films of thickness h ≪kl-1 , which spread self-similarly as t1 /4 along the direction of the drift corresponding to the propagation direction of the surface wave, kl being the wave number of the compressional acoustic wave that forms in the liquid due to leakage of the surface wave energy from the substrate into the liquid and t the time. Films of greater thicknesses h ˜kl-1≫β-1 , in contrast, are observed to spread with constant velocity but in a direction that opposes the drift and surface wave propagation due to the attenuation of the acoustic wave in the liquid. The universal equation derived allows for the collective prediction of the spreading of these thin and thick films in opposing directions.

High-frequency and meso-scale winter sea-ice variability in the Southern Ocean in a high-resolution global ocean model

NASA Astrophysics Data System (ADS)

Stössel, Achim; von Storch, Jin-Song; Notz, Dirk; Haak, Helmuth; Gerdes, Rüdiger

2018-03-01

This study is on high-frequency temporal variability (HFV) and meso-scale spatial variability (MSV) of winter sea-ice drift in the Southern Ocean simulated with a global high-resolution (0.1°) sea ice-ocean model. Hourly model output is used to distinguish MSV characteristics via patterns of mean kinetic energy (MKE) and turbulent kinetic energy (TKE) of ice drift, surface currents, and wind stress, and HFV characteristics via time series of raw variables and correlations. We find that (1) along the ice edge, the MSV of ice drift coincides with that of surface currents, in particular such due to ocean eddies; (2) along the coast, the MKE of ice drift is substantially larger than its TKE and coincides with the MKE of wind stress; (3) in the interior of the ice pack, the TKE of ice drift is larger than its MKE, mostly following the TKE pattern of wind stress; (4) the HFV of ice drift is dominated by weather events, and, in the absence of tidal currents, locally and to a much smaller degree by inertial oscillations; (5) along the ice edge, the curl of the ice drift is highly correlated with that of surface currents, mostly reflecting the impact of ocean eddies. Where ocean eddies occur and the ice is relatively thin, ice velocity is characterized by enhanced relative vorticity, largely matching that of surface currents. Along the ice edge, ocean eddies produce distinct ice filaments, the realism of which is largely confirmed by high-resolution satellite passive-microwave data.

An Auroral Boundary-Oriented Model of Subauroral Polarization Streams (SAPS)

NASA Astrophysics Data System (ADS)

Landry, R. G.; Anderson, P. C.

2018-04-01

An empirical model of subauroral polarization stream (SAPS) electric fields has been developed using measurements of ion drifts and particle precipitation made by the Defense Meteorological Satellite Program from 1987 to 2012 and Dynamics Explorer 2 as functions of magnetic local time (MLT), magnetic latitude, the auroral electrojet index (AE), hemisphere, and day of year. Over 500,000 subauroral passes are used. This model is oriented in degree magnetic latitude equatorward of the aurora and takes median values instead of the mean to avoid the contribution of low occurrence frequency subauroral ion drifts so that the model is representative of the much more common, latitudinally broad, low-amplitude SAPS field. The SAPS model is in broad agreement with previous statistical efforts in the variation of the SAPS field with MLT and magnetic activity level, although the median field is weaker. Furthermore, we find that the median SAPS field is roughly conjugate in both hemispheres for all seasons, with a maximum in SAPS amplitude and width found for 1800-2000 MLT. The SAPS amplitude is found to vary seasonally only from about 1800-2000 MLT, maximizing in both hemispheres during equinox months. Because this feature exists despite controlling for the AE index, it is suggested that this is due to a seasonal variation in the flux tube averaged ionospheric conductance at MLT sectors where it is more likely that one flux tube footprint is in darkness while the other is in daylight.

High resolution T2(*)-weighted Magnetic Resonance Imaging at 3 Tesla using PROPELLER-EPI.

PubMed

Krämer, Martin; Reichenbach, Jürgen R

2014-05-01

We report the application of PROPELLER-EPI for high resolution T2(*)-weighted imaging with sub-millimeter in-plane resolution on a clinical 3 Tesla scanner. Periodically rotated blades of a long-axis PROPELLER-EPI sequence were acquired with fast gradient echo readout and acquisition matrix of 320 × 50 per blade. Images were reconstructed by using 2D-gridding, phase and geometric distortion correction and compensation of resonance frequency drifts that occurred during extended measurements. To characterize these resonance frequency offsets, short FID calibration measurements were added to the PROPELLER-EPI sequence. Functional PROPELLER-EPI was performed with volunteers using a simple block design of right handed finger tapping. Results indicate that PROPELLER-EPI can be employed for fast, high resolution T2(*)-weighted imaging provided geometric distortions and possible resonance frequency drifts are properly corrected. Even small resonance frequency drifts below 10 Hz as well as non-corrected geometric distortions degraded image quality substantially. In the initial fMRI experiment image quality and signal-to-noise ratio was sufficient for obtaining high resolution functional activation maps. Copyright © 2014. Published by Elsevier GmbH.

Bowhead whale localization using asynchronous hydrophones in the Chukchi Sea.

PubMed

Warner, Graham A; Dosso, Stan E; Hannay, David E; Dettmer, Jan

2016-07-01

This paper estimates bowhead whale locations and uncertainties using non-linear Bayesian inversion of their modally-dispersed calls recorded on asynchronous recorders in the Chukchi Sea, Alaska. Bowhead calls were recorded on a cluster of 7 asynchronous ocean-bottom hydrophones that were separated by 0.5-9.2 km. A warping time-frequency analysis is used to extract relative mode arrival times as a function of frequency for nine frequency-modulated whale calls that dispersed in the shallow water environment. Each call was recorded on multiple hydrophones and the mode arrival times are inverted for: the whale location in the horizontal plane, source instantaneous frequency (IF), water sound-speed profile, seabed geoacoustic parameters, relative recorder clock drifts, and residual error standard deviations, all with estimated uncertainties. A simulation study shows that accurate prior environmental knowledge is not required for accurate localization as long as the inversion treats the environment as unknown. Joint inversion of multiple recorded calls is shown to substantially reduce uncertainties in location, source IF, and relative clock drift. Whale location uncertainties are estimated to be 30-160 m and relative clock drift uncertainties are 3-26 ms.

Homomorphic Filtering for Improving Time Synchronization in Wireless Networks

PubMed Central

Castillo-Secilla, José María; Palomares, José Manuel; León, Fernando; Olivares, Joaquín

2017-01-01

Wireless sensor networks are used to sample the environment in a distributed way. Therefore, it is mandatory for all of the measurements to be tightly synchronized in order to guarantee that every sensor is sampling the environment at the exact same instant of time. The synchronization drift gets bigger in environments suffering from temperature variations. Thus, this work is focused on improving time synchronization under deployments with temperature variations. The working hypothesis demonstrated in this work is that the clock skew of two nodes (the ratio of the real frequencies of the oscillators) is composed of a multiplicative combination of two main components: the clock skew due to the variations between the cut of the crystal of each oscillator and the clock skew due to the different temperatures affecting the nodes. By applying a nonlinear filtering, the homomorphic filtering, both components are separated in an effective way. A correction factor based on temperature, which can be applied to any synchronization protocol, is proposed. For testing it, an improvement of the FTSP synchronization protocol has been developed and physically tested under temperature variation scenarios using TelosB motes flashed with the IEEE 802.15.4 implementation supplied by TinyOS. PMID:28425955

Homomorphic Filtering for Improving Time Synchronization in Wireless Networks.

PubMed

Castillo-Secilla, José María; Palomares, José Manuel; León, Fernando; Olivares, Joaquín

2017-04-20

Wireless sensor networks are used to sample the environment in a distributed way. Therefore, it is mandatory for all of the measurements to be tightly synchronized in order to guarantee that every sensor is sampling the environment at the exact same instant of time. The synchronization drift gets bigger in environments suffering from temperature variations. Thus, this work is focused on improving time synchronization under deployments with temperature variations. The working hypothesis demonstrated in this work is that the clock skew of two nodes (the ratio of the real frequencies of the oscillators) is composed of a multiplicative combination of two main components: the clock skew due to the variations between the cut of the crystal of each oscillator and the clock skew due to the different temperatures affecting the nodes. By applying a nonlinear filtering, the homomorphic filtering, both components are separated in an effective way. A correction factor based on temperature, which can be applied to any synchronization protocol, is proposed. For testing it, an improvement of the FTSP synchronization protocol has been developed and physically tested under temperature variation scenarios using TelosB motes flashed with the IEEE 802.15.4 implementation supplied by TinyOS.

High frequency drift instabilities in a dusty plasma

NASA Technical Reports Server (NTRS)

Rosenberg, M.; Krall, N. A.

1994-01-01

High frequency drift instabilities with omega(sub ce) much greater than omega which is greater than omega(sub ci) are investigated in a dusty magnetized plasma in which locally there is an electron density gradient which is opposite in sign to a dust density gradient. Two different equilibria are considered, characterized by rho(sub d) greater than L(sub d) and less than L(sub d), where rho(sub d) is the dust gyroradius and L(sub nd) is the dust density scale length. Possible application to Saturn's F-ring is discussed.

Pathogen Populations Evolve to Greater Race Complexity in Agricultural Systems – Evidence from Analysis of Rhynchosporium secalis Virulence Data

PubMed Central

Zhan, Jiasui; Yang, Lina; Zhu, Wen; Shang, Liping; Newton, Adrian C.

2012-01-01

Fitness cost associated with pathogens carrying unnecessary virulence alleles is the fundamental assumption for preventing the emergence of complex races in plant pathogen populations but this hypothesis has rarely been tested empirically on a temporal and spatial scale which is sufficient to distinguish evolutionary signals from experimental error. We analyzed virulence characteristics of ∼1000 isolates of the barley pathogen Rhynchosporium secalis collected from different parts of the United Kingdom between 1984 and 2005. We found a gradual increase in race complexity over time with a significant correlation between sampling date and race complexity of the pathogen (r20 = 0.71, p = 0.0002) and an average loss of 0.1 avirulence alleles (corresponding to an average gain of 0.1 virulence alleles) each year. We also found a positive and significant correlation between barley cultivar diversity and R. secalis virulence variation. The conditions assumed to favour complex races were not present in the United Kingdom and we hypothesize that the increase in race complexity is attributable to the combination of natural selection and genetic drift. Host resistance selects for corresponding virulence alleles to fixation or dominant frequency. Because of the weak fitness penalty of carrying the unnecessary virulence alleles, genetic drift associated with other evolutionary forces such as hitch-hiking maintains the frequency of the dominant virulence alleles even after the corresponding resistance factors cease to be used. PMID:22723870

Intrafractional Baseline Shift or Drift of Lung Tumor Motion During Gated Radiation Therapy With a Real-Time Tumor-Tracking System.

PubMed

Takao, Seishin; Miyamoto, Naoki; Matsuura, Taeko; Onimaru, Rikiya; Katoh, Norio; Inoue, Tetsuya; Sutherland, Kenneth Lee; Suzuki, Ryusuke; Shirato, Hiroki; Shimizu, Shinichi

2016-01-01

To investigate the frequency and amplitude of baseline shift or drift (shift/drift) of lung tumors in stereotactic body radiation therapy (SBRT), using a real-time tumor-tracking radiation therapy (RTRT) system. Sixty-eight patients with peripheral lung tumors were treated with SBRT using the RTRT system. One of the fiducial markers implanted near the tumor was used for the real-time monitoring of the intrafractional tumor motion every 0.033 seconds by the RTRT system. When baseline shift/drift is determined by the system, the position of the treatment couch is adjusted to compensate for the shift/drift. Therefore, the changes in the couch position correspond to the baseline shift/drift in the tumor motion. The frequency and amount of adjustment to the couch positions in the left-right (LR), cranio-caudal (CC), and antero-posterior (AP) directions have been analyzed for 335 fractions administered to 68 patients. The average change in position of the treatment couch during the treatment time was 0.45 ± 2.23 mm (mean ± standard deviation), -1.65 ± 5.95 mm, and 1.50 ± 2.54 mm in the LR, CC, and AP directions, respectively. Overall the baseline shift/drift occurs toward the cranial and posterior directions. The incidence of baseline shift/drift exceeding 3 mm was 6.0%, 15.5%, 14.0%, and 42.1% for the LR, CC, AP, and for the square-root of sum of 3 directions, respectively, within 10 minutes of the start of treatment, and 23.0%, 37.6%, 32.5%, and 71.6% within 30 minutes. Real-time monitoring and frequent adjustments of the couch position and/or adding appropriate margins are suggested to be essential to compensate for possible underdosages due to baseline shift/drift in SBRT for lung cancers. Copyright © 2016 Elsevier Inc. All rights reserved.

Zonal Drift Variations and Suppression of Ionospheric Scintillation During St. Patrick's Day Storm Observed by Pingtung SCINDA Station in Taiwan

NASA Astrophysics Data System (ADS)

Su, S. Y.; Nayak, C.; Tsai, L. C.; Caton, R. G.; Groves, K. M.

2016-12-01

Variations of zonal drift and ionospheric VHF scintillations observed by a SCINDA station in Southern Taiwan during the St. Patrick's day geomagnetic storm are studied. Although scintillations were observed for 6 consecutive days before the storm, they were absence during the storm period. Data from VHF receivers, ionosonde and in situ plasma density observations from ESA's SWARM constellation are used to study the ionospheric irregularity/scintillation events in the Taiwanese sector to compare with what happened in the Indian sectors. The absence of scintillation in the Taiwanese sector during the storm period seems to be caused by a reduced pre-reversal enhancement (PRE) electric field from a westward prompt-penetration electric field (PPEF) during the storm. A low post-sunset ionosphere thus becomes unfavorable for the Rayleigh-Taylor instability to occur. On the contrary, the PPEFs were found to strongly enhance the PRE electric field in the Indian sector to cause the ionospheric irregularities/scintillations in the post-sunset sector. Zonal drift variations during the storm time are also discussed in conjunction with the irregularity/scintillation occurrences.

Artificial ion beam instabilities. I - Linear theory. II - Simulations

NASA Astrophysics Data System (ADS)

Scales, W. A.; Kintner, P. M.

1990-07-01

Some of the important plasma instabilities that result when an artificial ion beam is injected into the ionospheric F region are studied using linear Vlasov theory. The variation in wave spectra at the receiver as the receiver and plasma gun separate perpendicularly to the magnetic field is consistent with a beam density decrease at or near the receiver. At separation distances that are large fractions of the beam gyrodiameter, usually narrow-band waves near the background lower hybrid and H+ gyroharmonic frequencies are measured. These observations are consistent with waves expected to be generated by beam densities on the order of or less than a few percent of the background density. At smaller separation distances, broadband waves are usually observed with frequencies from zero up to and above the lower hybrid frequency. Electrostatic particle simulation studies of the plasma instabilities indicate that the broadband fluidlike lower hybrid instability is the most important for background particle heating. Perpendicular H+ heating is more efficient than perpendicular O+ or parallel electron heating for the drift velocity regime most relevant to past experiments.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burin, M. J.; Simmons, G. G.; Ceja, H. G.

The filamentary discharge seen within commercial plasma globes is commonly enjoyed yet not well understood. Here, we investigate the discharge properties of a plasma globe using a variable high voltage amplifier. We find that increasing voltage magnitude increases the number of filaments while leaving their individual structure basically unchanged, a result typical of dielectric barrier discharges. The frequency of the voltage also affects filament population but more significantly changes filament structure, with more diffuse filaments seen at lower frequencies. Voltage polarity is observed to be important, especially at lower frequencies, where for negative-gradient voltages the discharge is more diffuse, notmore » filamentary. At late stages of the discharge circular structures appear and expand on the glass boundaries. We find no trend of discharge speed with respect to voltage variables, though this may be due to manufacturer sample-to-sample variation. Each voltage cycle the discharge expands outward at ∼10–15 km/s, a speed significantly higher than the estimated electron drift yet considerably lower than that observed for most streamers. We discuss the physics of these observations and their relation to similar discharges that can be found within nature and industry.« less

Generalized banana-drift transport

NASA Astrophysics Data System (ADS)

Mynick, H. E.

1985-10-01

The theory of tokamak ripple transport in the banana-drift and ripple-plateau is extended in a number of directions. The theory is valid for small values of the toroidal periodicity number n of the perturbation, as well as for the moderate values (n approx. 10 - 20) previously assumed. It is shown that low-n perturbations can produce much greater transport than the larger-n perturbations usually studied. In addition, the ripple perturbation is allowed arbitrary values of poloidal mode number m and frequency omega, making it applicable to the transport induced by MHD modes. Bounce averaging is avoided, so the theory includes the contributions to transport from all harmonics of the bounce frequency, providing a continuous description of the transition from the banana drift to the ripple-plateau regime. The implications of the theory for toroidal rotation in tokamaks are considered.

An experimental test and models of drift and dispersal processes of pallid sturgeon (Scaphirhynchus albus) free embryos in the Missouri River

USGS Publications Warehouse

Braaten, P.J.; Fuller, D.B.; Lott, R.D.; Ruggles, M.P.; Brandt, T.F.; Legare, R.G.; Holm, R.J.

2012-01-01

Free embryos of wild pallid sturgeon Scaphirhynchus albus were released in the Missouri River and captured at downstream sites through a 180-km reach of the river to examine ontogenetic drift and dispersal processes. Free embryos drifted primarily in the fastest portion of the river channel, and initial drift velocities for all age groups (mean = 0.66–0.70 m s−1) were only slightly slower than mean water column velocity (0.72 m s−1). During the multi-day long-distance drift period, drift velocities of all age groups declined an average of 9.7% day−1. Younger free embryos remained in the drift upon termination of the study; whereas, older age groups transitioned from drifting to settling during the study. Models based on growth of free embryos, drift behavior, size-related variations in drift rates, and channel hydraulic characteristics were developed to estimate cumulative distance drifted during ontogenetic development through a range of simulated water temperatures and velocity conditions. Those models indicated that the average free embryo would be expected to drift several hundred km during ontogenetic development. Empirical data and model results highlight the long-duration, long-distance drift and dispersal processes for pallid sturgeon early life stages. In addition, results provide a likely mechanism for lack of pallid sturgeon recruitment in fragmented river reaches where dams and reservoirs reduce the length of free-flowing river available for pallid sturgeon free embryos during ontogenetic development.

Modern spandrels: the roles of genetic drift, gene flow and natural selection in the evolution of parallel clines.

PubMed

Santangelo, James S; Johnson, Marc T J; Ness, Rob W

2018-05-16

Urban environments offer the opportunity to study the role of adaptive and non-adaptive evolutionary processes on an unprecedented scale. While the presence of parallel clines in heritable phenotypic traits is often considered strong evidence for the role of natural selection, non-adaptive evolutionary processes can also generate clines, and this may be more likely when traits have a non-additive genetic basis due to epistasis. In this paper, we use spatially explicit simulations modelled according to the cyanogenesis (hydrogen cyanide, HCN) polymorphism in white clover ( Trifolium repens ) to examine the formation of phenotypic clines along urbanization gradients under varying levels of drift, gene flow and selection. HCN results from an epistatic interaction between two Mendelian-inherited loci. Our results demonstrate that the genetic architecture of this trait makes natural populations susceptible to decreases in HCN frequencies via drift. Gradients in the strength of drift across a landscape resulted in phenotypic clines with lower frequencies of HCN in strongly drifting populations, giving the misleading appearance of deterministic adaptive changes in the phenotype. Studies of heritable phenotypic change in urban populations should generate null models of phenotypic evolution based on the genetic architecture underlying focal traits prior to invoking selection's role in generating adaptive differentiation. © 2018 The Author(s).

Academic Drift in Dutch Non-University Higher Education Evaluated: A Staff Perspective

ERIC Educational Resources Information Center

Griffioen, Didi M. E.; de Jong, Uulkje

2013-01-01

In the context of a European knowledge economy, the Dutch non-university institutions systematically develop research activities at a higher frequency than before. With this development, they have been accused of academic drift, of striving to receive a status comparable to traditional universities. This study considers the perceptions of both…

Detecting an atomic clock frequency anomaly using an adaptive Kalman filter algorithm

NASA Astrophysics Data System (ADS)

Song, Huijie; Dong, Shaowu; Wu, Wenjun; Jiang, Meng; Wang, Weixiong

2018-06-01

The abnormal frequencies of an atomic clock mainly include frequency jump and frequency drift jump. Atomic clock frequency anomaly detection is a key technique in time-keeping. The Kalman filter algorithm, as a linear optimal algorithm, has been widely used in real-time detection for abnormal frequency. In order to obtain an optimal state estimation, the observation model and dynamic model of the Kalman filter algorithm should satisfy Gaussian white noise conditions. The detection performance is degraded if anomalies affect the observation model or dynamic model. The idea of the adaptive Kalman filter algorithm, applied to clock frequency anomaly detection, uses the residuals given by the prediction for building ‘an adaptive factor’ the prediction state covariance matrix is real-time corrected by the adaptive factor. The results show that the model error is reduced and the detection performance is improved. The effectiveness of the algorithm is verified by the frequency jump simulation, the frequency drift jump simulation and the measured data of the atomic clock by using the chi-square test.

Phylogeny of Fomitopsis pinicola: A species complex

Treesearch

John Haight; Gary A. Laursen; Jessie A. Glaeser; D. Lee Taylor

2016-01-01

Fungal species with a broad distribution may exhibit considerable genetic variation over their geographic ranges. Variation may develop among populations based on geographic isolation, lack of migration, and genetic drift, though this genetic variation may not always be evident when examining phenotypic characters. Fomitopsis pinicola is an...

Run charts revisited: a simulation study of run chart rules for detection of non-random variation in health care processes.

PubMed

Anhøj, Jacob; Olesen, Anne Vingaard

2014-01-01

A run chart is a line graph of a measure plotted over time with the median as a horizontal line. The main purpose of the run chart is to identify process improvement or degradation, which may be detected by statistical tests for non-random patterns in the data sequence. We studied the sensitivity to shifts and linear drifts in simulated processes using the shift, crossings and trend rules for detecting non-random variation in run charts. The shift and crossings rules are effective in detecting shifts and drifts in process centre over time while keeping the false signal rate constant around 5% and independent of the number of data points in the chart. The trend rule is virtually useless for detection of linear drift over time, the purpose it was intended for.

Electric fields in the ionosphere

NASA Technical Reports Server (NTRS)

Kirchhoff, V. W. J. H.

1975-01-01

F-region drift velocities, measured by incoherent-scatter radar were analyzed in terms of diurnal, seasonal, magnetic activity, and solar cycle effects. A comprehensive electric field model was developed that includes the effects of the E and F-region dynamos, magnetospheric sources, and ionospheric conductivities, for both the local and conjugate regions. The E-region dynamo dominates during the day but at night the F-region and convection are more important. This model provides much better agreement with observations of the F-region drifts than previous models. Results indicate that larger magnitudes occur at night, and that daily variation is dominated by the diurnal mode. Seasonal variations in conductivities and thermospheric winds indicate a reversal in direction in the early morning during winter from south to northward. On magnetic perturbed days and the drifts deviate rather strongly from the quiet days average, especially around 13 L.T. for the northward and 18 L.T. for the westward component.

The Effects of Population Size Histories on Estimates of Selection Coefficients from Time-Series Genetic Data.

PubMed

Jewett, Ethan M; Steinrücken, Matthias; Song, Yun S

2016-11-01

Many approaches have been developed for inferring selection coefficients from time series data while accounting for genetic drift. These approaches have been motivated by the intuition that properly accounting for the population size history can significantly improve estimates of selective strengths. However, the improvement in inference accuracy that can be attained by modeling drift has not been characterized. Here, by comparing maximum likelihood estimates of selection coefficients that account for the true population size history with estimates that ignore drift by assuming allele frequencies evolve deterministically in a population of infinite size, we address the following questions: how much can modeling the population size history improve estimates of selection coefficients? How much can mis-inferred population sizes hurt inferences of selection coefficients? We conduct our analysis under the discrete Wright-Fisher model by deriving the exact probability of an allele frequency trajectory in a population of time-varying size and we replicate our results under the diffusion model. For both models, we find that ignoring drift leads to estimates of selection coefficients that are nearly as accurate as estimates that account for the true population history, even when population sizes are small and drift is high. This result is of interest because inference methods that ignore drift are widely used in evolutionary studies and can be many orders of magnitude faster than methods that account for population sizes. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Oscillations in the 45 - 5000 MHz Radio Spectrum of the 18 April 2014 Flare

NASA Astrophysics Data System (ADS)

Karlický, Marian; Rybák, Ján; Monstein, Christian

2017-07-01

Using a new type of oscillation map, made from the radio spectra by the wavelet technique, we study the 18 April 2014 M7.3 flare (SOL2014-04-18T13:03:00L245C017). We find a quasi-periodic character of this flare with periods in the range 65 - 115 seconds. At the very beginning of this flare, in connection with the drifting pulsation structure (plasmoid ejection), we find that the 65 - 115 s oscillation phase slowly drifts towards lower frequencies, which indicates an upward propagating wave initiated at the start of the magnetic reconnection. Many periods (1 - 200 seconds) are found in the drifting pulsation structure, which documents multi-scale and multi-periodic processes. On this drifting structure, fiber bursts with a characteristic period of about one second are superimposed, whose frequency drift is similar to that of the drifting 65 - 115 s oscillation phase. We also checked periods found in this flare by the EUV Imaging Spectrometer (EIS)/ Hinode and Interface Region Imaging Spectrograph (IRIS) observations. We recognize the type III bursts (electron beams) as proposed, but their time coincidence with the EIS and IRIS peaks is not very good. The reason probably is that the radio spectrum is a whole-disk record consisting of all bursts from any location, while the EIS and IRIS peaks are emitted only from locations of slits in the EIS and IRIS observations.

Drifting States and Synchronization Induced Chaos in Autonomous Networks of Excitable Neurons.

PubMed

Echeveste, Rodrigo; Gros, Claudius

2016-01-01

The study of balanced networks of excitatory and inhibitory neurons has led to several open questions. On the one hand it is yet unclear whether the asynchronous state observed in the brain is autonomously generated, or if it results from the interplay between external drivings and internal dynamics. It is also not known, which kind of network variabilities will lead to irregular spiking and which to synchronous firing states. Here we show how isolated networks of purely excitatory neurons generically show asynchronous firing whenever a minimal level of structural variability is present together with a refractory period. Our autonomous networks are composed of excitable units, in the form of leaky integrators spiking only in response to driving currents, remaining otherwise quiet. For a non-uniform network, composed exclusively of excitatory neurons, we find a rich repertoire of self-induced dynamical states. We show in particular that asynchronous drifting states may be stabilized in purely excitatory networks whenever a refractory period is present. Other states found are either fully synchronized or mixed, containing both drifting and synchronized components. The individual neurons considered are excitable and hence do not dispose of intrinsic natural firing frequencies. An effective network-wide distribution of natural frequencies is however generated autonomously through self-consistent feedback loops. The asynchronous drifting state is, additionally, amenable to an analytic solution. We find two types of asynchronous activity, with the individual neurons spiking regularly in the pure drifting state, albeit with a continuous distribution of firing frequencies. The activity of the drifting component, however, becomes irregular in the mixed state, due to the periodic driving of the synchronized component. We propose a new tool for the study of chaos in spiking neural networks, which consists of an analysis of the time series of pairs of consecutive interspike intervals. In this space, we show that a strange attractor with a fractal dimension of about 1.8 is formed in the mentioned mixed state.

Drifting States and Synchronization Induced Chaos in Autonomous Networks of Excitable Neurons

PubMed Central

Echeveste, Rodrigo; Gros, Claudius

2016-01-01

The study of balanced networks of excitatory and inhibitory neurons has led to several open questions. On the one hand it is yet unclear whether the asynchronous state observed in the brain is autonomously generated, or if it results from the interplay between external drivings and internal dynamics. It is also not known, which kind of network variabilities will lead to irregular spiking and which to synchronous firing states. Here we show how isolated networks of purely excitatory neurons generically show asynchronous firing whenever a minimal level of structural variability is present together with a refractory period. Our autonomous networks are composed of excitable units, in the form of leaky integrators spiking only in response to driving currents, remaining otherwise quiet. For a non-uniform network, composed exclusively of excitatory neurons, we find a rich repertoire of self-induced dynamical states. We show in particular that asynchronous drifting states may be stabilized in purely excitatory networks whenever a refractory period is present. Other states found are either fully synchronized or mixed, containing both drifting and synchronized components. The individual neurons considered are excitable and hence do not dispose of intrinsic natural firing frequencies. An effective network-wide distribution of natural frequencies is however generated autonomously through self-consistent feedback loops. The asynchronous drifting state is, additionally, amenable to an analytic solution. We find two types of asynchronous activity, with the individual neurons spiking regularly in the pure drifting state, albeit with a continuous distribution of firing frequencies. The activity of the drifting component, however, becomes irregular in the mixed state, due to the periodic driving of the synchronized component. We propose a new tool for the study of chaos in spiking neural networks, which consists of an analysis of the time series of pairs of consecutive interspike intervals. In this space, we show that a strange attractor with a fractal dimension of about 1.8 is formed in the mentioned mixed state. PMID:27708572

Design of a Torque Current Generator for Strapdown Gyroscopes. Ph.D. Thesis; [and performance prediction

NASA Technical Reports Server (NTRS)

Mcknight, R. D.; Blalock, T. V.; Kennedy, E. J.

1974-01-01

The design, analysis, and experimental evaluation of an optimum performance torque current generator for use with strapdown gyroscopes, is presented. Among the criteria used to evaluate the design were the following: (1) steady-state accuracy; (2) margins of stability against self-oscillation; (3) temperature variations; (4) aging; (5) static errors drift errors, and transient errors, (6) classical frequency and time domain characteristics; and (7) the equivalent noise at the input of the comparater operational amplifier. The DC feedback loop of the torque current generator was approximated as a second-order system. Stability calculations for gain margins are discussed. Circuit diagrams are shown and block diagrams showing the implementation of the torque current generator are discussed.

Two-dimensional numerical model for the high electron mobility transistor

NASA Astrophysics Data System (ADS)

Loret, Dany

1987-11-01

A two-dimensional numerical drift-diffusion model for the High Electron Mobility Transistor (HEMT) is presented. Special attention is paid to the modeling of the current flow over the heterojunction. A finite difference scheme is used to solve the equations, and a variable mesh spacing was implemented to cope with the strong variations of functions near the heterojunction. Simulation results are compared to experimental data for a 0.7 μm gate length device. Small-signal transconductances and cut-off frequency obtained from the 2-D model agree well with the experimental values from S-parameter measurements. It is shown that the numerical models give good insight into device behaviour, including important parasitic effects such as electron injection into the bulk GaAs.

Profiling of the injected charge drift current transients by cross-sectional scanning technique

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gaubas, E., E-mail: eugenijus.gaubas@ff.vu.lt; Ceponis, T.; Pavlov, J.

2014-02-07

The electric field distribution and charge drift currents in Si particle detectors are analyzed. Profiling of the injected charge drift current transients has been implemented by varying charge injection position within a cross-sectional boundary of the particle detector. The obtained profiles of the induction current density and duration of the injected charge drift pulses fit well the simulated current variations. Induction current transients have been interpreted by different stages of the bipolar and monopolar drift of the injected carriers. Profiles of the injected charge current transients registered in the non-irradiated and neutron irradiated Si diodes are compared. It has beenmore » shown that the mixed regime of the competing processes of drift, recombination, and diffusion appears in the measured current profiles on the irradiated samples. The impact of the avalanche effects can be ignored based on the investigations presented. It has been shown that even a simplified dynamic model enabled us to reproduce the main features of the profiled transients of induced charge drift current.« less

Development of a drift-correction procedure for a direct-reading spectrometer

NASA Technical Reports Server (NTRS)

Chapman, G. B., II; Gordon, W. A.

1977-01-01

A procedure which provides automatic correction for drifts in the radiometric sensitivity of each detector channel in a direct-reading emission spectrometer is described. Such drifts are customarily controlled by the regular analyses of standards, which provide corrections for changes in the excitational, optical, and electronic components of the instrument. This standardization procedure, however, corrects for the optical and electronic drifts. It is a step that must be taken if the time, effort, and cost of processing standards is to be minimized. This method of radiometric drift correction uses a 1,000-W tungsten-halogen reference lamp to illuminate each detector through the same optical path as that traversed during sample analysis. The responses of the detector channels to this reference light are regularly compared with channel response to the same light intensity at the time of analytical calibration in order to determine and correct for drift. Except for placing the lamp in position, the procedure is fully automated and compensates for changes in spectral intensity due to variations in lamp current. A discussion of the implementation of this drift-correction system is included.

Drifting cavity solitons and dissipative rogue waves induced by time-delayed feedback in Kerr optical frequency comb and in all fiber cavities

NASA Astrophysics Data System (ADS)

Tlidi, Mustapha; Panajotov, Krassimir; Ferré, Michel; Clerc, Marcel G.

2017-11-01

Time-delayed feedback plays an important role in the dynamics of spatially extended systems. In this contribution, we consider the generic Lugiato-Lefever model with delay feedback that describes Kerr optical frequency comb in all fiber cavities. We show that the delay feedback strongly impacts the spatiotemporal dynamical behavior resulting from modulational instability by (i) reducing the threshold associated with modulational instability and by (ii) decreasing the critical frequency at the onset of this instability. We show that for moderate input intensities it is possible to generate drifting cavity solitons with an asymmetric radiation emitted from the soliton tails. Finally, we characterize the formation of rogue waves induced by the delay feedback.

The relative roles of cultural drift and acoustic adaptation in shaping syllable repertoires of island bird populations change with time since colonization.

PubMed

Potvin, Dominique A; Clegg, Sonya M

2015-02-01

In birds, song divergence often precedes and facilitates divergence of other traits. We assessed the relative roles of cultural drift, innovation, and acoustic adaptation in divergence of island bird dialects, using silvereyes (Zosterops lateralis). In recently colonized populations, syllable diversity was not significantly lower than source populations, shared syllables between populations decreased with increasing number of founder events, and dialect variation displayed contributions from both habitat features and drift. The breadth of multivariate space occupied by recently colonized Z. l. lateralis populations was comparable to evolutionarily old forms that have diverged over thousands to hundreds of thousands of years. In evolutionarily old subspecies, syllable diversity was comparable to the mainland and the amount of variation in syllable composition explained by habitat features increased by two- to threefold compared to recently colonized populations. Together these results suggest that cultural drift influences syllable repertoires in recently colonized populations, but innovation likely counters syllable loss from colonization. In evolutionarily older populations, the influence of acoustic adaptation increases, possibly favoring a high diversity of syllables. These results suggest that the relative importance of cultural drift and acoustic adaptation changes with time since colonization in island bird populations, highlighting the value of considering multiple mechanisms and timescale of divergence when investigating island song divergence. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

Simulation of ventilation efficiency, and pre-closure temperatures in emplacement drifts at Yucca Mountain, Nevada, using Monte Carlo and composite thermal-pulse methods

USGS Publications Warehouse

Case, J.B.; Buesch, D.C.

2004-01-01

Predictions of waste canister and repository driftwall temperatures as functions of space and time are important to evaluate pre-closure performance of the proposed repository for spent nuclear fuel and high-level radioactive waste at Yucca Mountain, Nevada. Variations in the lithostratigraphic features in densely welded and crystallized rocks of the 12.8-million-year-old Topopah Spring Tuff, especially the porosity resulting from lithophysal cavities, affect thermal properties. A simulated emplacement drift is based on projecting lithophysal cavity porosity values 50 to 800 m from the Enhanced Characterization of the Repository Block cross drift. Lithophysal cavity porosity varies from 0.00 to 0.05 cm3/cm3 in the middle nonlithophysal zone and from 0.03 to 0.28 cm3/cm3 in the lower lithophysal zone. A ventilation model and computer program titled "Monte Carlo Simulation of Ventilation" (MCSIMVENT), which is based on a composite thermal-pulse calculation, simulates statistical variability and uncertainty of rock-mass thermal properties and ventilation performance along a simulated emplacement drift for a pre-closure period of 50 years. Although ventilation efficiency is relatively insensitive to thermal properties, variations in lithophysal porosity along the drift can result in a range of peak driftwall temperatures can range from 40 to 85??C for the preclosure period. Copyright ?? 2004 by ASME.

Drift paths of ions composing multiple-nose spectral structures near the inner edge of the plasma sheet

DOE PAGES

Ferradas, C. P.; Zhang, J. -C.; Spence, H. E.; ...

2016-11-05

Here in this paper, we present a case study of the H +, He +, and O + multiple-nose structures observed by the Helium, Oxygen, Proton, and Electron instrument on board Van Allen Probe A over one complete orbit on 28 September 2013. Nose structures are observed near the inner edge of the plasma sheet and constitute the signatures of ion drift in the highly dynamic environment of the inner magnetosphere. We find that the multiple noses are intrinsically associated with variations in the solar wind. Backward ion drift path tracings show new details of the drift trajectories of thesemore » ions; i.e., multiple noses are formed by ions with a short drift time from the assumed source location to the inner region and whose trajectories (1) encircle the Earth different number of times or (2) encircle the Earth equal number of times but with different drift time, before reaching the observation site.« less

Drift paths of ions composing multiple-nose spectral structures near the inner edge of the plasma sheet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferradas, C. P.; Zhang, J. -C.; Spence, H. E.

Here in this paper, we present a case study of the H +, He +, and O + multiple-nose structures observed by the Helium, Oxygen, Proton, and Electron instrument on board Van Allen Probe A over one complete orbit on 28 September 2013. Nose structures are observed near the inner edge of the plasma sheet and constitute the signatures of ion drift in the highly dynamic environment of the inner magnetosphere. We find that the multiple noses are intrinsically associated with variations in the solar wind. Backward ion drift path tracings show new details of the drift trajectories of thesemore » ions; i.e., multiple noses are formed by ions with a short drift time from the assumed source location to the inner region and whose trajectories (1) encircle the Earth different number of times or (2) encircle the Earth equal number of times but with different drift time, before reaching the observation site.« less

Single-mode 140 nm swept light source realized by using SSG-DBR lasers

NASA Astrophysics Data System (ADS)

Fujiwara, N.; Yoshimura, R.; Kato, K.; Ishii, H.; Kano, F.; Kawaguchi, Y.; Kondo, Y.; Ohbayashi, K.; Oohashi, H.

2008-02-01

We demonstrate a single-mode and fast wavelength swept light source by using Superestrucuture grating distributed Bragg reflector (SSG-DBR) lasers for use in optical frequency-domain reflectometry optical coherence tomography. The SSG-DBR lasers provide single-mode operation resulting in high coherency. Response of the wavelength tuning is very fast; several nanoseconds, but there was an unintentional wavelength drift resulting from a thermal drift due to injecting tuning current. The dri1ft unfortunately requires long time to converge; more than a few milliseconds. For suppressing the wavelength drift, we introduced Thermal Drift Compensation mesa (TDC) parallel to the laser mesa with the spacing of 20 μm. By controlling TDC current to satisfy the total electric power injected into both the laser mesa and the TDC mesa, the thermal drift can be suppressed. In the present work, we fabricated 4 wavelength's kinds of SSG-DBR laser, which covers respective wavelength band; S-band (1496-1529 nm), C-band (1529-1564 nm), L --band (1564-1601 nm), and L +-band (1601-1639). We set the frequency channel of each laser with the spacing 6.25 GHz and 700 channels. The total frequency channel number is 2800 channels (700 ch × 4 lasers). We simultaneously operated the 4 lasers with a time interval of 500 ns/channel. A wavelength tuning range of more than 140 nm was achieved within 350 μs. The output power was controlled to be 10 mW for all channels. A single-mode, accurate, wide, and fast wavelength sweep was demonstrated with the SSG-DBR lasers having TDC mesa structure for the first time.

Modeling of planar varactor frequency multiplier devices with blocking barriers

NASA Technical Reports Server (NTRS)

Lieneweg, Udo; Tolmunen, T. J.; Frerking, Margaret A.; Maserjian, Joseph

1992-01-01

Models for optimization of planar frequency triplers with symmetrical C-V curves are presented. Role and limitation of various blocking barriers (oxide, Mott, heterojunction) are discussed. Devices with undoped drift regions (BIN) have moderate efficiency but a broad range of power operation, whereas devices with doped drift regions (BNN) have high efficiency in a narrow power window. In particular, an upper power limit of the BNN is caused by electron velocity saturation. Implementations in SiO2/Si and AlAs/GaAs and means for increasing the power of BNN structures are considered.

Modeling of planar varactor frequency multiplier devices with blocking barriers

NASA Astrophysics Data System (ADS)

Lieneweg, Udo; Tolmunen, T. J.; Frerking, Margaret A.; Maserjian, Joseph

1992-05-01

Models for optimization of planar frequency triplers with symmetrical C-V curves are presented. Role and limitation of various blocking barriers (oxide, Mott, heterojunction) are discussed. Devices with undoped drift regions (BIN) have moderate efficiency but a broad range of power operation, whereas devices with doped drift regions (BNN) have high efficiency in a narrow power window. In particular, an upper power limit of the BNN is caused by electron velocity saturation. Implementations in SiO2/Si and AlAs/GaAs and means for increasing the power of BNN structures are considered.

Nonlinear Drift-Kinetic Equation in the Presence of a Circularly Polarized Wave

NASA Technical Reports Server (NTRS)

Khazanov, G. V.; Krivorutsky, E. N.; Six, N. Frank (Technical Monitor)

2002-01-01

Equations of the single particle motion and nonlinear kinetic equation for plasma in the presence of a circularly polarized wave of arbitrary frequency in the drift approximation are presented. The nonstationarity and inhomogeneity of the plasma-wave system are taken into account. The time dependent part of the ponderomotive force is discussed.

An Adaptive Filter for the Removal of Drifting Sinusoidal Noise Without a Reference.

PubMed

Kelly, John W; Siewiorek, Daniel P; Smailagic, Asim; Wang, Wei

2016-01-01

This paper presents a method for filtering sinusoidal noise with a variable bandwidth filter that is capable of tracking a sinusoid's drifting frequency. The method, which is based on the adaptive noise canceling (ANC) technique, will be referred to here as the adaptive sinusoid canceler (ASC). The ASC eliminates sinusoidal contamination by tracking its frequency and achieving a narrower bandwidth than typical notch filters. The detected frequency is used to digitally generate an internal reference instead of relying on an external one as ANC filters typically do. The filter's bandwidth adjusts to achieve faster and more accurate convergence. In this paper, the focus of the discussion and the data is physiological signals, specifically electrocorticographic (ECoG) neural data contaminated with power line noise, but the presented technique could be applicable to other recordings as well. On simulated data, the ASC was able to reliably track the noise's frequency, properly adjust its bandwidth, and outperform comparative methods including standard notch filters and an adaptive line enhancer. These results were reinforced by visual results obtained from real ECoG data. The ASC showed that it could be an effective method for increasing signal to noise ratio in the presence of drifting sinusoidal noise, which is of significant interest for biomedical applications.

TEC Variations Over Korean Peninsula During Magnetic Storm

NASA Astrophysics Data System (ADS)

Ji, E.-Y.; Choi, B.-K.; Kim, K.-H.; Lee, D.-H.; Cho, J.-H.; Chung, J.-K.; Park, J.-U.

2008-03-01

By analyzing the observations from a number of ground- and space-based instruments, including ionosonde, magnetometers, and ACE interplanetary data, we examine the response of the ionospheric TEC over Korea during 2003 magnetic storms. We found that the variation of vertical TEC is correlated with the southward turning of the interplanetary magnetic field B_z. It is suggested that the electric fields produced by the dynamo process in the high-latitude region and the prompt penetration in the low-latitude region are responsible for TEC increases. During the June 16 event, dayside TEC values increase more than 15%. And the ionospheric F2-layer peak height (hmF2) was ˜300km higher and the vertical E×B drift (estimated from ground-based magnetometer equatorial electrojet delta H) showed downward drift, which may be due to the ionospheric disturbance dynamo electric field produced by the large amount of energy dissipation into high-latitude regions. In contr! ast, during November 20 event, the nightside TEC increases may be due to the prompt penetration westward electric field. The ionospheric F2-layer peak height was below 200km and the vertical E×B drift showed downward drift. Also, a strong correlation is observed between enhanced vertical TEC and enhanced interplanetary electric field. It is shown that, even though TEC increases are caused by the different processes, the electric field disturbances in the ionosphere play an important role in the variation of TEC over Korea.

Erratum: Evidence That a Deep Meridional Flow Sets the Sunspot Cycle Period

NASA Technical Reports Server (NTRS)

Hathaway, David H.; Nandy, Dibyendu; Wilson, Robert M.; Reichmann, Edwin J.

2004-01-01

An error was made in entering the data. This changes the results concerning the length of the time lag between the variations in the meridional flow speed and those in the cycle amplitude. The final paragraph on page 667 should read: Finally, we study the relationship between the drift velocities and the amplitudes of the hemisphere/cycles. We compare the drift velocity at the maximum of the cycle to the amplitude of that cycle for that hemisphere. There is a positive (0.5) and significant (95%) correlation between the two. However, an even stronger relationship is found between the drift velocity and the amplitude of the N + 2 cycle. The correlation is stronger (0.7) and more significant (99%), as shown. This relationship is suggestive of a "memory" in the solar cycle, again a property of dynamo models that use meridional circulation. Indeed, the two-cycle lag is precisely the relationship found by Charbonneau & Dikpati. This behavior is, however, more difficult to interpret, and we elaborate on this in the next section. In either case, these correlations only explain part of the variance in cycle amplitude (25% for the current cycle and 50% for the N + 2 cycle). Obviously, other mechanisms, such as variations in the gradient in the rotation rate, also contribute to the cycle amplitude variations. Our investigation of possible connections between drift rates and the amplitudes of the N + 1 and N + 3 cycles gives no significant correlations at these alternative time lags.

Preliminary Investigation of the Satellite Gravitational Red Shift Experiment

NASA Technical Reports Server (NTRS)

Zacharias, J. R.; Searle, C. L.; Graham, J. W.; Badessa, R. S.; Bates, V. J.; Kent, R. L.

1961-01-01

The work performed under this contract involved study, design, and construction of experimental equipment to perform a short-term measurement of the gravitational red shift. In the system designed, phase comparison techniques are employed so that the time interval required to obtain a single measurement for one altitude is of the order of one minute. An elliptical orbit was chosen to permit measurement of frequency shift as a function of altitude. One particularly attractive orbit is that having a 12-hour orbiting period (perigee, 270 miles, apogee 24,800 miles). This orbit, shown in Fig. 1, allows continuous measurements to be made over an 11-hour interval during which time the altitude is varying greatly. Measurements can not be made for the succeeding 14 hours. Since the variation of frequency difference with altitude is of greatest interest, a fixed offset or a slow drift between the oscillator on the ground and. the oscillator in the satellite will not invalidate the measurements.

Adaptive spatial filtering using photochromic glass

NASA Astrophysics Data System (ADS)

Potton, R. J.

1999-12-01

Commercially available photochromic glasses exhibit a wide range of spectral sensitivities and darkening response times. Short wavelengths are more effective than long ones for causing darkening but at least one type of glass is effectively darkened by red light (icons/Journals/Common/lambda" ALT="lambda" ALIGN="TOP"/> = 633 nm) with an intensity of about 1 kW m-2. Used as adaptive spatial filters, these glasses attenuate a wavefront by an amount that depends on their recent exposure to light. One type of optical processing that can be performed with such filters is drift nulling in an interferometer excited by light of a wavelength within the sensitivity spectrum of the photochrome. This form of processing has been demonstrated by dithering the speckle pattern in a single-fibre multimode interferometer. The dither allows phase-sensitive detection techniques to be used in the detection of signal-induced phase variations in a frequency band extending from the inverse response time of the photochrome to the dither frequency.

Characteristics of the equatorial plasma drifts as obtained by using Canadian Doppler ionosonde over southern tip of India

NASA Astrophysics Data System (ADS)

Sripathi, S.; Singh, Ram; Banola, S.; Sreekumar, Sreeba; Emperumal, K.; Selvaraj, C.

2016-08-01

We present here characteristics of the Doppler drift measurements over Tirunelveli (8.73°N, 77.70°E; dip 0.5°N), an equatorial site over Southern India using Doppler interferometry technique of Canadian ionosonde. Three-dimensional bulk motions of the scatterers as reflected from the ionosphere are derived by using Doppler interferometry technique at selected frequencies using spaced receivers arranged in magnetic E-W and N-S directions. After having compared with Lowell's digisonde drifts at Trivandrum, we studied the temporal and seasonal variabilities of quiet time drifts for the year 2012. The observations showed higher vertical drifts during post sunset in the equinox followed by winter and summer seasons. The comparison of Doppler vertical drifts with the drifts obtained from (a) virtual height and (b) Fejer drift model suggests that Doppler vertical drifts are relatively higher as compared to the drifts obtained from model and virtual height methods. Further, it is seen that vertical drifts exhibited equinoctial asymmetry in prereversal enhancement quite similar to such asymmetry observed in the spread F in the ionograms and GPS L band scintillations. The zonal drifts, on the other hand, showed westward during daytime with mean drifts of ~150-200 m/s and correlated well with equatorial electrojet strength indicating the role of E region dynamo during daytime, while they are eastward during nighttime with mean drifts of ~100 m/s resembling F region dynamo process. Also, zonal drifts showed large westward prior to the spread F onset during autumn equinox than vernal equinox, suggesting strong zonal shears which might cause equinoctial asymmetry in spread F.

Space charge effect in spectrometers of ion mobility increment with planar drift chamber.

PubMed

Elistratov, A A; Sherbakov, L A

2007-01-01

The effect of space charge on the ion beam in a spectrometer of ion mobility increment with the planar drift chamber has been investigated. A model for the drift of ions under a non-uniform high-frequency electric field(1-3) has been developed recently. We have amplified this model by taking space charge effect into account. The ion peak shape taking into consideration the space charge effect is obtained. The output current saturation effect limiting the rise of the ion peak with increasing ion density at the input of the drift chamber of a spectrometer is observed. We show that the saturation effect is caused by the following phenomenon. The maximum possible output ion density exists, depending on the ion type (constant ion mobility, k(0)) and the time of the motion of ions through the drift chamber. At the same time, the ion density does not depend on the parameters of the drift chamber.

RF cavity design and qualification for proton accelerator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Teotia, Vikas; Malhotra, Sanjay; Ukarde, Priti

Alvarez type Drift Tube Linac (DTL) is used for acceleration of proton beam in low energy section of beta ranging from 0.04 to 0.40. DTL is cylindrical RF cavity resonating in TM010 mode at 352.21 MHz frequency. It consists of array of drift tubes arranged ensuring that DTL centre and Drift Tube centre are concentric. The Drift Tubes also houses Permanent Magnet Quadrupole for transverse focusing of proton beam. A twelve cell prototype of DTL section is designed, developed and fabricated at Bhabha Atomic Research Centre, Trombay. Complete DTL accelerator consists of eight such DTL sections. High frequency microwave simulationsmore » are carried out in SOPRANO, vector fields and COMSOL simulation software. This prototype DTL is 1640.56 mm long cavity with 520 mm ID, 600 mm OD and consists of eleven Drift Tubes, two RF end flanges, three slug tuners, six post couplers, three RF field monitors, one RF waveguide coupler, two DN100 vacuum flanges and DTL tank platform with alignment features. Girder based Drift tube mounting arrangement utilizing uncompressing energy of disc springs for optimum combo RF-vacuum seal compression is worked out and implemented. This paper discusses design of this RF vacuum cavity operating at high accelerating field gradient in ultra-high vacuum. Detailed vacuum design and results of RF and vacuum qualifications are discussed. Results on mechanical accuracy achieved on scaled pre-prototype are also presented. Paper summarizes the engineering developments carried out for this RF cavity and brings out the future activities proposed in indigenous development of high gradient RF cavities for ion accelerators. (author)« less

Intrafractional Baseline Shift or Drift of Lung Tumor Motion During Gated Radiation Therapy With a Real-Time Tumor-Tracking System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Takao, Seishin; Miyamoto, Naoki; Matsuura, Taeko

2016-01-01

Purpose: To investigate the frequency and amplitude of baseline shift or drift (shift/drift) of lung tumors in stereotactic body radiation therapy (SBRT), using a real-time tumor-tracking radiation therapy (RTRT) system. Methods and Materials: Sixty-eight patients with peripheral lung tumors were treated with SBRT using the RTRT system. One of the fiducial markers implanted near the tumor was used for the real-time monitoring of the intrafractional tumor motion every 0.033 seconds by the RTRT system. When baseline shift/drift is determined by the system, the position of the treatment couch is adjusted to compensate for the shift/drift. Therefore, the changes in the couch positionmore » correspond to the baseline shift/drift in the tumor motion. The frequency and amount of adjustment to the couch positions in the left-right (LR), cranio-caudal (CC), and antero-posterior (AP) directions have been analyzed for 335 fractions administered to 68 patients. Results: The average change in position of the treatment couch during the treatment time was 0.45 ± 2.23 mm (mean ± standard deviation), −1.65 ± 5.95 mm, and 1.50 ± 2.54 mm in the LR, CC, and AP directions, respectively. Overall the baseline shift/drift occurs toward the cranial and posterior directions. The incidence of baseline shift/drift exceeding 3 mm was 6.0%, 15.5%, 14.0%, and 42.1% for the LR, CC, AP, and for the square-root of sum of 3 directions, respectively, within 10 minutes of the start of treatment, and 23.0%, 37.6%, 32.5%, and 71.6% within 30 minutes. Conclusions: Real-time monitoring and frequent adjustments of the couch position and/or adding appropriate margins are suggested to be essential to compensate for possible underdosages due to baseline shift/drift in SBRT for lung cancers.« less

Clinal variation at microsatellite loci reveals historical secondary intergradation between glacial races of Coregonus artedi (Teleostei: Coregoninae).

PubMed

Turgeon, J; Bernatchez, L

2001-11-11

Classical models of the spatial structure of population genetics rely on the assumption of migration-drift equilibrium, which is seldom met in natural populations having only recently colonized their current range (e.g., postglacial). Population structure then depicts historical events, and counfounding effects due to recent secondary contact between recently differentiated lineages can further counfound analyses of association between geographic and genetic distances. Mitochondrial polymorphisms have revealed the existence of two closely related lineages of the lake cisco, Coregonus artedi, whose significantly different but overlaping geographical distributions provided a weak signal of past range fragmentation blurred by putative subsequent extensive secondary contacts. In this study, we analyzed geographical patterns of genetic variation at seven microsatellite loci among 22 populations of lake cisco located along the axis of an area covered by proglacial lakes 12,000-8,000 years ago in North America. The results clearly confirmed the existence of two genetically distinct races characterized by different sets of microsatellite alleles whose frequencies varied clinally across some 3000 km. Equilibrium and nonequilibrium analyses of isolation by distance revealed historical signal of gene flow resulting from the nearly complete admixture of these races following neutral secondary contacts in their historical habitat and indicated that the colonization process occurred by a stepwise expansion of an eastern (Atlantic) race into a previously established Mississippian race. This historical signal of equilibrium contrasted with the current migration-drift disequilibrium within major extant watersheds and was apparently maintained by high effective population sizes and low migration regimes.

Special Hydron Maser Workshop held on Wednesday, December 5, 1990

DTIC Science & Technology

1990-12-01

described in the paper by N.B. Koshelyacvsky of VNIIFTRI given on Dece~llber I , the drift in wall shift of their masers was about 1 x 10-’\\cr day. No data...liperatrires tend to givc rise to grcatcr frequency drifts. Thercfoce, they arc pla~lning to put a CIII-75 maser in a refrigerator at VNIIFTRI to

The collisional drift mode in a partially ionized plasma. [in the F region

NASA Technical Reports Server (NTRS)

Hudson, M. K.; Kennel, C. F.

1974-01-01

The structure of the drift instability was examined in several density regimes. Let sub e be the total electron mean free path, k sub z the wave-vector component along the magnetic field, and the ratio of perpendicular ion diffusion to parallel electron streaming rates. At low densities (k sub z lambda 1) the drift mode is isothermal and should be treated kineticly. In the finite heat conduction regime square root of m/M k sub z Lambda sub 1) the drift instability threshold is reduced at low densities and increased at high densities as compared to the isothermal threshold. Finally, in the energy transfer limit (k sub z kambda sub e square root of m/M) the drift instability behaves adiabatically in a fully ionized plasma and isothermally in a partially ionized plasma for an ion-neutral to Coulomb collision frequency ratio.

Radio frequency focused interdigital linear accelerator

DOEpatents

Swenson, Donald A.; Starling, W. Joel

2006-08-29

An interdigital (Wideroe) linear accelerator employing drift tubes, and associated support stems that couple to both the longitudinal and support stem electromagnetic fields of the linac, creating rf quadrupole fields along the axis of the linac to provide transverse focusing for the particle beam. Each drift tube comprises two separate electrodes operating at different electrical potentials as determined by cavity rf fields. Each electrode supports two fingers, pointing towards the opposite end of the drift tube, forming a four-finger geometry that produces an rf quadrupole field distribution along its axis. The fundamental periodicity of the structure is equal to one half of the particle wavelength .beta..lamda., where .beta. is the particle velocity in units of the velocity of light and .lamda. is the free space wavelength of the rf. Particles are accelerated in the gaps between drift tubes. The particle beam is focused in regions inside the drift tubes.

Overtone Mobility Spectrometry (Part 2): Theoretical Considerations of Resolving Power

PubMed Central

Valentine, Stephen J.; Stokes, Sarah T.; Kurulugama, Ruwan T.; Nachtigall, Fabiane M.; Clemmer, David E.

2009-01-01

The transport of ions through multiple drift regions is modeled in order to develop an equation that is useful for an understanding of the resolving power of an overtone mobility spectrometry (OMS) technique. It is found that resolving power is influenced by a number of experimental variables, including those that define ion mobility spectrometry (IMS) resolving power: drift field (E), drift region length (L), and buffer gas temperature (T). However, unlike IMS, the resolving power of OMS is also influenced by the number of drift regions (n), harmonic frequency value (m), and the phase number (ϕ) of the applied drift field. The OMS resolving power dependence upon the new OMS variables (n, m, and ϕ) scales differently than the square root dependence of the E, L, and T variables in IMS. The results provide insight about optimal instrumental design and operation. PMID:19230705

Local selection modifies phenotypic divergence among Rana temporaria populations in the presence of gene flow.

PubMed

Richter-Boix, Alex; Teplitsky, Céline; Rogell, Björn; Laurila, Anssi

2010-02-01

In ectotherms, variation in life history traits among populations is common and suggests local adaptation. However, geographic variation itself is not a proof for local adaptation, as genetic drift and gene flow may also shape patterns of quantitative variation. We studied local and regional variation in means and phenotypic plasticity of larval life history traits in the common frog Rana temporaria using six populations from central Sweden, breeding in either open-canopy or partially closed-canopy ponds. To separate local adaptation from genetic drift, we compared differentiation in quantitative genetic traits (Q(ST)) obtained from a common garden experiment with differentiation in presumably neutral microsatellite markers (F(ST)). We found that R. temporaria populations differ in means and plasticities of life history traits in different temperatures at local, and in F(ST) at regional scale. Comparisons of differentiation in quantitative traits and in molecular markers suggested that natural selection was responsible for the divergence in growth and development rates as well as in temperature-induced plasticity, indicating local adaptation. However, at low temperature, the role of genetic drift could not be separated from selection. Phenotypes were correlated with forest canopy closure, but not with geographical or genetic distance. These results indicate that local adaptation can evolve in the presence of ongoing gene flow among the populations, and that natural selection is strong in this system.

Contrast affects flicker and speed perception differently

NASA Technical Reports Server (NTRS)

Thompson, P.; Stone, L. S.

1997-01-01

We have previously shown that contrast affects speed perception, with lower-contrast, drifting gratings perceived as moving slower. In a recent study, we examined the implications of this result on models of speed perception that use the amplitude of the response of linear spatio-temporal filters to determine speed. In this study, we investigate whether the contrast dependence of speed can be understood within the context of models in which speed estimation is made using the temporal frequency of the response of linear spatio-temporal filters. We measured the effect of contrast on flicker perception and found that contrast manipulations produce opposite effects on perceived drift rate and perceived flicker rate, i.e., reducing contrast increases the apparent temporal frequency of counterphase modulated gratings. This finding argues that, if a temporal frequency-based algorithm underlies speed perception, either flicker and speed perception must not be based on the output of the same mechanism or contrast effects on perceived spatial frequency reconcile the disparate effects observed for perceived temporal frequency and speed.

Unusual characteristics of electromagnetic waves excited by cometary newborn ions with large perpendicular energies

NASA Technical Reports Server (NTRS)

Brinca, A. L.; Tsurutani, B. T.

1987-01-01

The characteristics of electromagnetic waves excited by cometary newborn ions with large perpendicular energies are examined using a model of solar wind permeated by dilute drifting ring distributions of electrons and oxygen ions with finite thermal spreads. The model has parameters compatible with the ICE observations at the Giacobini-Zinner comet. It is shown that cometary newborn ions with large perpendicular energies can excite a wave mode with rest frame frequencies in the order of the heavy ion cyclotron frequency, Omega(i), and unusual propagation characteristics at small obliquity angles. For parallel propagation, the mode is left-hand circularly polarized, might be unstable in a frequency range containing Omega(i), and moves in the direction of the newborn ion drift along the static magnetic field.

Sediment drifts and contourites on the continental margin off northwest Britain

NASA Astrophysics Data System (ADS)

Stoker, M. S.; Akhurst, M. C.; Howe, J. A.; Stow, D. A. V.

1998-01-01

Seismic reflection profiles and short cores from the continental margin off northwest Britain have revealed a variety of sediment-drift styles and contourite deposits preserved in the northeast Rockall Trough and Faeroe-Shetland Channel. The sediment drifts include: (1) distinctly mounded elongate drifts, both single- and multi-crested; (2) broad sheeted drift forms, varying from gently domed to flat-lying; and (3) isolated patch drifts, including moat-related drifts. Fields of sediment waves are locally developed in association with the elongate and gently domed, broad sheeted drifts. The contrasting styles of the sediment drifts most probably reflect the interaction between a variable bottom-current regime and the complex bathymetry of the continental margin. The bulk of the mounded/gently domed drifts occur in the northeast Rockall Trough, whereas the flat-lying, sheet-form deposits occur in the Faeroe-Shetland Channel, a much narrower basin which appears to have been an area more of sediment export than drift accumulation. Patch drifts are present in both basins. In the northeast Rockall Trough, the along-strike variation from single- to multi-crested elongate drifts may be a response to bottom-current changes influenced by developing drift topography. Muddy, silty muddy and sandy contourites have been recovered in sediment cores from the uppermost parts of the drift sequences. On the basis of their glaciomarine origin, these mid- to high-latitude contourites can be referred to, collectively, as glacigenic contourites. Both partial and complete contourite sequences are preserved; the former consist largely of sandy (mid-only) and top-only contourites. Sandy contourites, by their coarse-grained nature and their formation under strongest bottom-current flows, are the most likely to be preserved in the rock record. However, the very large scale of sediment drifts should be borne in mind with regard to the recognition of fossil contourites in ancient successions.

Role of ionization and electron drift velocity profile to Rayleigh instability in a Hall thruster plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Singh, Sukhmander; Malik, Hitendra K.

Role of ionization to Rayleigh instability is clarified in a Hall thruster plasma under the variety of profiles of electron drift velocity, namely, step-like profile (SLP) and two different super-Gaussian profiles (SGP1 and SGP2). For this, a relevant Rayleigh equation is derived and solved numerically using fourth-order Runge-Kutta method. Interestingly, an upper cutoff frequency of oscillations {omega}{sub max} is realized for the occurrence of the instability that shows dependence on the ionization rate {alpha}, electron drift velocity u{sub 0}, electron cyclotron frequency {Omega}, azimuthal wave number k{sub y}, plasma density n{sub 0}, density gradient {partial_derivative}n{sub 0}/{partial_derivative}x, ion (electron) thermal speedmore » V{sub thI}(V{sub thE}), and ion (electron) plasma frequency {omega}{sub pi}({omega}{sub pe}). The frequency {omega}{sub max} follows the trend {omega}{sub max} (for SGP2) >{omega}{sub max} (for SLP) >{omega}{sub max} (for SGP1) and shows a similar behaviour with ionization for all types of the velocity profiles. The instability is found to grow faster for the higher {alpha} and the ion temperature but it acquires lower rate under the effect of the higher electron temperature; the perturbed potential also varies in accordance with the growth rate. The electron temperature influences the growth rate and cutoff frequency less significantly in comparison with the ion temperature.« less

Resolving Structural Isomers of Monosaccharide Methyl Glycosides Using Drift Tube and Traveling Wave Ion Mobility Mass Spectrometry

PubMed Central

Li, Hongli; Giles, Kevin; Bendiak, Brad; Kaplan, Kimberly; Siems, William F.; Hill, Herbert H.

2013-01-01

Monosaccharide structural isomers including sixteen methyl-D-glycopyranosides and four methyl-N-acetylhexosamines were subjected to ion mobility measurements by electrospray ion mobility mass spectrometry. Two ion mobility-MS systems were employed: atmospheric pressure drift tube ion mobility time-of-flight mass spectrometry and a Synapt G2 HDMS system which incorporates a low pressure traveling wave ion mobility separator. All the compounds were investigated as [M+Na]+ ions in the positive mode. A majority of the monosaccharide structural isomers exhibited different mobility drift times in either system, depending on differences in their anomeric and stereochemical configurations. In general, drift time patterns (relative drift times of isomers) matched between the two instruments. Higher resolving power was observed using the atmospheric pressure drift tube. Collision cross section values of monosaccharide structural isomers were directly calculated from the atmospheric pressure ion mobility experiments and a collision cross section calibration curve was made for the traveling wave ion mobility instrument. Overall, it was demonstrated that ion mobility-mass spectrometry using either drift tube or traveling wave ion mobility is a valuable technique for resolving subtle variations in stereochemistry among the sodium adducts of monosaccharide methyl glycosides. PMID:22339760

Limits of neutral drift: lessons from the in vitro evolution of two ribozymes.

PubMed

Petrie, Katherine L; Joyce, Gerald F

2014-10-01

The relative contributions of adaptive selection and neutral drift to genetic change are unknown but likely depend on the inherent abundance of functional genotypes in sequence space and how accessible those genotypes are to one another. To better understand the relative roles of selection and drift in evolution, local fitness landscapes for two different RNA ligase ribozymes were examined using a continuous in vitro evolution system under conditions that foster the capacity for neutral drift to mediate genetic change. The exploration of sequence space was accelerated by increasing the mutation rate using mutagenic nucleotide analogs. Drift was encouraged by carrying out evolution within millions of separate compartments to exploit the founder effect. Deep sequencing of individuals from the evolved populations revealed that the distribution of genotypes did not escape the starting local fitness peak, remaining clustered around the sequence used to initiate evolution. This is consistent with a fitness landscape where high-fitness genotypes are sparse and well isolated, and suggests, at least in this context, that neutral drift alone is not a primary driver of genetic change. Neutral drift does, however, provide a repository of genetic variation upon which adaptive selection can act.

Seasonal and inter-annual variation in occurrence and biomass of rooted macrophytes and drift algae in shallow bays

NASA Astrophysics Data System (ADS)

Berglund, J.; Mattila, J.; Rönnberg, O.; Heikkilä, J.; Bonsdorff, E.

2003-04-01

Submerged rooted macrophytes and drift algae were studied in shallow (0-1 m) brackish soft-bottom bays in the Åland Islands, N Baltic Sea, in 1997-2000. The study was performed by aerial photography and ground-truth sampling and the compatibility of the methods was evaluated. The study provided quantitative results on seasonal and inter-annual variation in growth, distribution and biomass of submerged macrophytes and drift algae. On an average, 18 submerged macrophyte species occurred in the studied bays. The most common species, by weight and occurrence, were Chara aspera, Cladophora glomerata, Pilayella littoralis and Potamogeton pectinatus. Filamentous green algae constituted 45-70% of the biomass, charophytes 25-40% and vascular plants 3-18%. A seasonal pattern with a peak in biomass in July-August was found and the mean biomass was negatively correlated with exposure. There were statistically significant differences in coverage among years, and among levels of exposure. The coverage was highest when exposure was low. Both sheltered and exposed bays were influenced by drift algae (30 and 60% occurrence in July-August) and there was a positive correlation between exposure and occurrence of algal accumulations. At exposed sites, most of the algae had drifted in from other areas, while at sheltered ones they were mainly of local origin. Data obtained by aerial photography and ground-truth sampling showed a high concordance, but aerial photography gave a 9% higher estimate than the ground-truth samples. The results can be applied in planning of monitoring and management strategies for shallow soft-bottom areas under potential threat of drift algae.

Distinguishing the Biomass Allocation Variance Resulting from Ontogenetic Drift or Acclimation to Soil Texture

PubMed Central

Xie, Jiangbo; Tang, Lisong; Wang, Zhongyuan; Xu, Guiqing; Li, Yan

2012-01-01

In resource-poor environments, adjustment in plant biomass allocation implies a complex interplay between environmental signals and plant development rather than a delay in plant development alone. To understand how environmental factors influence biomass allocation or the developing phenotype, it is necessary to distinguish the biomass allocations resulting from environmental gradients or ontogenetic drift. Here, we compared the development trajectories of cotton plants (Gossypium herbaceum L.), which were grown in two contrasting soil textures during a 60-d period. Those results distinguished the biomass allocation pattern resulting from ontogenetic drift and the response to soil texture. The soil texture significantly changed the biomass allocation to leaves and roots, but not to stems. Soil texture also significantly changed the development trajectories of leaf and root traits, but did not change the scaling relationship between basal stem diameter and plant height. Results of nested ANOVAs of consecutive plant-size categories in both soil textures showed that soil gradients explained an average of 63.64–70.49% of the variation of biomass allocation to leaves and roots. Ontogenetic drift explained 77.47% of the variation in biomass allocation to stems. The results suggested that the environmental factors governed the biomass allocation to roots and leaves, and ontogenetic drift governed the biomass allocation to stems. The results demonstrated that biomass allocation to metabolically active organs (e.g., roots and leaves) was mainly governed by environmental factors, and that biomass allocation to metabolically non-active organs (e.g., stems) was mainly governed by ontogenetic drift. We concluded that differentiating the causes of development trajectories of plant traits was important to the understanding of plant response to environmental gradients. PMID:22911802

Chromospheric Evaporation and Decimetric Radio Emission in Solar Flares

NASA Technical Reports Server (NTRS)

Aschwanden, Markus J.; Benz, Arnold O.

1995-01-01

We have discovered decimetric signatures of the chromospheric evaporation process. Evidence for the radio detection of chromospheric evaporation is based on the radio-inferred values of (1) the electron density, (2) the propagation speed, and (3) the timing, which are found to be in good agreement with statistical values inferred from the blueshifted Ca xix soft X-ray line. The physical basis of our model is that free-free absorption of plasma emission is strongly modified by the steep density gradient and the large temperature increase in the upflowing flare plasma. The steplike density increase at the chromospheric evaporation front causes a local discontinuity in the plasma frequency, manifested as almost infinite drift rate in decimetric type III bursts. The large temperature increase of the upflowing plasma considerably reduces the local free-free opacity (due to the T-(exp -3/2) dependence) and thus enhances the brightness of radio bursts emitted at the local plasma frequency near the chromospheric evaporation front, while a high-frequency cutoff is expected in the high-density regions behind the front, which can be used to infer the velocity of the upflowing plasma. From model calculations we find strong evidence that decimetric bursts with a slowly drifting high-frequency cutoff are produced by fundamental plasma emission, contrary to the widespread belief that decimetric bursts are preferentially emitted at the harmonic plasma level. We analyzed 21 flare episodes from 1991-1993 for which broadband (100-3000 MHz) radio dynamic spectra from Phoenix, hard X-ray data from BATSE/CGRO, and soft X-ray data from GOES were available. We detected slowly drifting high-frequency cutoffs between 1.1 and 3.0 GHz, with drift rates of -41 +/- 32 MHz/s, extending over time intervals of 24 +/- 23 s. Developing a density model for type III-emitting flare loops based on the statistically observed drift rate of type III bursts by Alvarez & Haddock, we infer velocities of up to 360 km/s for the upflowing plasma, with an average of v(sub CE) = 236 +/- 130 km /s for episodes with 5-15 s duration. The mean electron density of the upflowing plasma is n(sub e) = 5.2(+/-3.1) x 10(exp 10) /cu cm when it is first detected in radio, at coronal altitudes of h(sub 0) = 9.2 +/- 2.3 Mm.

Drift effects on the galactic cosmic ray modulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Laurenza, M.; Storini, M.; Vecchio, A.

2014-02-01

Cosmic ray (CR) modulation is driven by both solar activity and drift effects in the heliosphere, although their role is only qualitatively understood as it is difficult to connect the CR variations to their sources. In order to address this problem, the Empirical Mode Decomposition technique has been applied to the CR intensity, recorded by three neutron monitors at different rigidities (Climax, Rome, and Huancayo-Haleakala (HH)), the sunspot area, as a proxy for solar activity, the heliospheric magnetic field magnitude, directly related to CR propagation, and the tilt angle (TA) of the heliospheric current sheet (HCS), which characterizes drift effectsmore » on CRs. A prominent periodicity at ∼six years is detected in all the analyzed CR data sets and it is found to be highly correlated with changes in the HCS inclination at the same timescale. In addition, this variation is found to be responsible for the main features of the CR modulation during periods of low solar activity, such as the flat (peaked) maximum in even (odd) solar cycles. The contribution of the drift effects to the global Galactic CR modulation has been estimated to be between 30% and 35%, depending on the CR particle energy. Nevertheless, the importance of the drift contribution is generally reduced in periods nearing the sunspot maximum. Finally, threshold values of ∼40°, ∼45°, and >55° have been derived for the TA, critical for the CR modulation at the Climax, Rome, and HH rigidity thresholds, respectively.« less

Comparative study of anti-drift nozzles' wear.

PubMed

Bolly, G; Huyghebaert, B; Mostade, O; Oger, R

2002-01-01

When spraying, the drift is a restricting factor which reduces the efficiency of pesticides treatments and increases their impact on the environment. The use of anti-drift nozzles is the most common technique to reduce the drift effect. The basic principle of all anti-drift nozzles is to produce bigger droplets (Imag DLO, 1999) being less sensitive to the wind. The increase of the droplets' size is possible whether by reducing the spraying pressure (anti-drift fan nozzle) or by injecting air in the nozzle (air injection nozzles). This study aims at comparing the performances of the main anti-drift nozzles available on the Belgian market (Teejet DG and AI, Albuz ADI and AVI, Hardi ISO LD et AI). The study made it possible to compare thirteen different nozzles' sets according to their trademark, type and material. The study is based on the analysis of macroscopic parameters (flowrate, transversal distribution and individual distribution) as well as on the analysis of microscopic parameters (spraying deposit on artificial target). The evolution of these parameters is analysed according to the nozzle's wear. The wear is carried out artificially according to the "ISO 5682-1" standard (ISO 5682-1, 1996). The results confirmed the major influence of the manufacturing material on the nozzles' wear, ceramic being the most resistant material. Macroscopic as well as microscopic parameters variated according to the utilization time without any direct correlation. Indeed, most parameters variate in an uncertain way. It was however possible to establish a correlation between the wear time and the recovering rate and flowrate parameters. The utilization length is different depending on the type of nozzle, air injection nozzles being more resistant. At last, the analysis of microscopic parameters (spraying deposit) (Degré A., 1999), shows that the number of impacts is stable depending on the wear, while the size of impacts and the recovering rate increase.

Wireless Low-Power Integrated Basal-Body-Temperature Detection Systems Using Teeth Antennas in the MedRadio Band.

PubMed

Yang, Chin-Lung; Zheng, Gou-Tsun

2015-11-20

This study proposes using wireless low power thermal sensors for basal-body-temperature detection using frequency modulated telemetry devices. A long-term monitoring sensor requires low-power circuits including a sampling circuit and oscillator. Moreover, temperature compensated technologies are necessary because the modulated frequency might have additional frequency deviations caused by the varying temperature. The temperature compensated oscillator is composed of a ring oscillator and a controlled-steering current source with temperature compensation, so the output frequency of the oscillator does not drift with temperature variations. The chip is fabricated in a standard Taiwan Semiconductor Manufacturing Company (TSMC) 0.18-μm complementary metal oxide semiconductor (CMOS) process, and the chip area is 0.9 mm². The power consumption of the sampling amplifier is 128 µW. The power consumption of the voltage controlled oscillator (VCO) core is less than 40 µW, and the output is -3.04 dBm with a buffer stage. The output voltage of the bandgap reference circuit is 1 V. For temperature measurements, the maximum error is 0.18 °C with a standard deviation of ±0.061 °C, which is superior to the required specification of 0.1 °C.

Effect of mass variation on dynamics of tethered system in orbital maneuvering

NASA Astrophysics Data System (ADS)

Sun, Liang; Zhao, Guowei; Huang, Hai

2018-05-01

In orbital maneuvering, the mass variation due to fuel consumption has an obvious impact on the dynamics of tethered system, which cannot be neglected. The contributions of the work are mainly shown in two aspects: 1) the improvement of the model; 2) the analysis of dynamics characteristics. As the mass is variable, and the derivative of the mass is directly considered in the traditional Lagrange equation, the expression of generalized force is complicated. To solve this problem, the coagulated derivative is adopted in the paper; besides, the attitude dynamics equations derived in this paper take into account the effect of mass variation and the drift of orbital trajectory at the same time. The bifurcation phenomenon, the pendular motion angular frequency, and amplitudes of tether vibration revealed in this paper can provide a reference for the parameters and controller design in practical engineering. In the article, a dumbbell model is adopted to analyze the dynamics of tethered system, in which the mass variation of base satellite is fully considered. Considering the practical application, the case of orbital transfer under a transversal thrust is mainly studied. Besides, compared with the analytical solutions of librational angles, the effects of mass variation on stability and librational characteristic are studied. Finally, in order to make an analysis of the effect on vibrational characteristic, a lumped model is introduced, which reveals a strong coupling of librational and vibrational characteristics.

Detection of Yarkovsky acceleration in the context of precovery observations and the future Gaia catalogue

NASA Astrophysics Data System (ADS)

Desmars, J.

2015-03-01

Context. The Yarkovsky effect is a weak non-gravitational force leading to a small variation of the semi-major axis of an asteroid. Using radar measurements and astrometric observations, it is possible to measure a drift in semi-major axis through orbit determination. Aims: This paper aims to detect a reliable drift in semi-major axis of near-Earth asteroids (NEAs) from ground-based observations and to investigate the impact of precovery observations and the future Gaia catalogue in the detection of a secular drift in semi-major axis. Methods: We have developed a precise dynamical model of an asteroid's motion taking the Yarkovsky acceleration into account and allowing the fitting of the drift in semi-major axis. Using statistical methods, we investigate the quality and the robustness of the detection. Results: By filtering spurious detections with an estimated maximum drift depending on the asteroid's size, we found 46 NEAs with a reliable drift in semi-major axis in good agreement with the previous studies. The measure of the drift leads to a better orbit determination and constrains some physical parameters of these objects. Our results are in good agreement with the 1 /D dependence of the drift and with the expected ratio of prograde and retrograde NEAs. We show that the uncertainty of the drift mainly depends on the length of orbital arc and in this way we highlight the importance of the precovery observations and data mining in the detection of consistent drift. Finally, we discuss the impact of Gaia catalogue in the determination of drift in semi-major axis.

High resolution observations with Artemis-IV and the NRH. I. Type IV associated narrow-band bursts

NASA Astrophysics Data System (ADS)

Bouratzis, C.; Hillaris, A.; Alissandrakis, C. E.; Preka-Papadema, P.; Moussas, X.; Caroubalos, C.; Tsitsipis, P.; Kontogeorgos, A.

2016-02-01

Context. Narrow-band bursts appear on dynamic spectra from microwave to decametric frequencies as fine structures with very small duration and bandwidth. They are believed to be manifestations of small scale energy release through magnetic reconnection. Aims: We analyzed 27 metric type IV events with embedded narrow-band bursts, which were observed by the ARTEMIS-IV radio spectrograph from 30 June 1999 to 1 August 2010. We examined the morphological characteristics of isolated narrow-band structures (mostly spikes) and groups or chains of structures. Methods: The events were recorded with the SAO high resolution (10 ms cadence) receiver of ARTEMIS-IV in the 270-450 MHz range. We measured the duration, spectral width, and frequency drift of ~12 000 individual narrow-band bursts, groups, and chains. Spike sources were imaged with the Nançay radioheliograph (NRH) for the event of 21 April 2003. Results: The mean duration of individual bursts at fixed frequency was ~100 ms, while the instantaneous relative bandwidth was ~2%. Some bursts had measurable frequency drift, either positive or negative. Quite often spikes appeared in chains, which were closely spaced in time (column chains) or in frequency (row chains). Column chains had frequency drifts similar to type-IIId bursts, while most of the row chains exhibited negative frequently drifts with a rate close to that of fiber bursts. From the analysis of NRH data, we found that spikes were superimposed on a larger, slowly varying, background component. They were polarized in the same sense as the background source, with a slightly higher degree of polarization of ~65%, and their size was about 60% of their size in total intensity. Conclusions: The duration and bandwidth distributions did not show any clear separation in groups. Some chains tended to assume the form of zebra, lace stripes, fiber bursts, or bursts of the type-III family, suggesting that such bursts might be resolved in spikes when viewed with high resolution. The NRH data indicate that the spikes are not fluctuations of the background, but represent additional emission such as what would be expected from small-scale reconnection.

The influence of genetic drift and selection on quantitative traits in a plant pathogenic fungus.

PubMed

Stefansson, Tryggvi S; McDonald, Bruce A; Willi, Yvonne

2014-01-01

Genetic drift and selection are ubiquitous evolutionary forces acting to shape genetic variation in populations. While their relative importance has been well studied in plants and animals, less is known about their relative importance in fungal pathogens. Because agro-ecosystems are more homogeneous environments than natural ecosystems, stabilizing selection may play a stronger role than genetic drift or diversifying selection in shaping genetic variation among populations of fungal pathogens in agro-ecosystems. We tested this hypothesis by conducting a QST/FST analysis using agricultural populations of the barley pathogen Rhynchosporium commune. Population divergence for eight quantitative traits (QST) was compared with divergence at eight neutral microsatellite loci (FST) for 126 pathogen strains originating from nine globally distributed field populations to infer the effects of genetic drift and types of selection acting on each trait. Our analyses indicated that five of the eight traits had QST values significantly lower than FST, consistent with stabilizing selection, whereas one trait, growth under heat stress (22°C), showed evidence of diversifying selection and local adaptation (QST>FST). Estimates of heritability were high for all traits (means ranging between 0.55-0.84), and average heritability across traits was negatively correlated with microsatellite gene diversity. Some trait pairs were genetically correlated and there was significant evidence for a trade-off between spore size and spore number, and between melanization and growth under benign temperature. Our findings indicate that many ecologically and agriculturally important traits are under stabilizing selection in R. commune and that high within-population genetic variation is maintained for these traits.

Velocity- and pointing-error measurements of a 300 000-r/min self-bearing permanent-magnet motor for optical applications

NASA Astrophysics Data System (ADS)

Breitkopf, Sven; Lilienfein, Nikolai; Achtnich, Timon; Zwyssig, Christof; Tünnermann, Andreas; Pupeza, Ioachim; Limpert, Jens

2018-06-01

Compact, ultra-high-speed self-bearing permanent-magnet motors enable a wide scope of applications including an increasing number of optical ones. For implementation in an optical setup, the rotors have to satisfy high demands regarding their velocity and pointing errors. Only a restricted number of measurements of these parameters exist and only at relatively low velocities. This manuscript presents the measurement of the velocity and pointing errors at rotation frequencies up to 5 kHz. The acquired data allow us to identify the rotor drive as the main source of velocity variations with fast fluctuations of up to 3.4 ns (RMS) and slow drifts of 23 ns (RMS) over ˜120 revolutions at 5 kHz in vacuum. At the same rotation frequency, the pointing fluctuated by 12 μrad (RMS) and 33 μrad (peak-to-peak) over ˜10 000 round trips. To our best knowledge, this states the first measurement of velocity and pointing errors at multi-kHz rotation frequencies and will allow potential adopters to evaluate the feasibility of such rotor drives for their application.

Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection

PubMed Central

Chesler, Elissa J.; Gatti, Daniel M.; Morgan, Andrew P.; Strobel, Marge; Trepanier, Laura; Oberbeck, Denesa; McWeeney, Shannon; Hitzemann, Robert; Ferris, Martin; McMullan, Rachel; Clayshultle, Amelia; Bell, Timothy A.; de Villena, Fernando Pardo-Manuel; Churchill, Gary A.

2016-01-01

Multi-parent populations (MPPs) capture and maintain the genetic diversity from multiple inbred founder strains to provide a resource for high-resolution genetic mapping through the accumulation of recombination events over many generations. Breeding designs that maintain a large effective population size with randomized assignment of breeders at each generation can minimize the impact of selection, inbreeding, and genetic drift on allele frequencies. Small deviations from expected allele frequencies will have little effect on the power and precision of genetic analysis, but a major distortion could result in reduced power and loss of important functional alleles. We detected strong transmission ratio distortion in the Diversity Outbred (DO) mouse population on chromosome 2, caused by meiotic drive favoring transmission of the WSB/EiJ allele at the R2d2 locus. The distorted region harbors thousands of polymorphisms derived from the seven non-WSB founder strains and many of these would be lost if the sweep was allowed to continue. To ensure the utility of the DO population to study genetic variation on chromosome 2, we performed an artificial selection against WSB/EiJ alleles at the R2d2 locus. Here, we report that we have purged the WSB/EiJ allele from the drive locus while preserving WSB/EiJ alleles in the flanking regions. We observed minimal disruption to allele frequencies across the rest of the autosomal genome. However, there was a shift in haplotype frequencies of the mitochondrial genome and an increase in the rate of an unusual sex chromosome aneuploidy. The DO population has been restored to genome-wide utility for genetic analysis, but our experience underscores that vigilant monitoring of similar genetic resource populations is needed to ensure their long-term utility. PMID:27694113

Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection.

PubMed

Chesler, Elissa J; Gatti, Daniel M; Morgan, Andrew P; Strobel, Marge; Trepanier, Laura; Oberbeck, Denesa; McWeeney, Shannon; Hitzemann, Robert; Ferris, Martin; McMullan, Rachel; Clayshultle, Amelia; Bell, Timothy A; Manuel de Villena, Fernando Pardo; Churchill, Gary A

2016-12-07

Multi-parent populations (MPPs) capture and maintain the genetic diversity from multiple inbred founder strains to provide a resource for high-resolution genetic mapping through the accumulation of recombination events over many generations. Breeding designs that maintain a large effective population size with randomized assignment of breeders at each generation can minimize the impact of selection, inbreeding, and genetic drift on allele frequencies. Small deviations from expected allele frequencies will have little effect on the power and precision of genetic analysis, but a major distortion could result in reduced power and loss of important functional alleles. We detected strong transmission ratio distortion in the Diversity Outbred (DO) mouse population on chromosome 2, caused by meiotic drive favoring transmission of the WSB/EiJ allele at the R2d2 locus. The distorted region harbors thousands of polymorphisms derived from the seven non-WSB founder strains and many of these would be lost if the sweep was allowed to continue. To ensure the utility of the DO population to study genetic variation on chromosome 2, we performed an artificial selection against WSB/EiJ alleles at the R2d2 locus. Here, we report that we have purged the WSB/EiJ allele from the drive locus while preserving WSB/EiJ alleles in the flanking regions. We observed minimal disruption to allele frequencies across the rest of the autosomal genome. However, there was a shift in haplotype frequencies of the mitochondrial genome and an increase in the rate of an unusual sex chromosome aneuploidy. The DO population has been restored to genome-wide utility for genetic analysis, but our experience underscores that vigilant monitoring of similar genetic resource populations is needed to ensure their long-term utility. Copyright © 2016 by the Genetics Society of America.

The Drop of the Coherence of the Lower Kilohertz Quasi-periodic Brightness Variations is Also Observed in XTE J1701-462

NASA Astrophysics Data System (ADS)

Barret, D.; Bachetti, M.; Miller, M. Coleman

2011-02-01

We investigate the quality factor and root mean square (rms) amplitude of the lower kilohertz quasi-periodic brightness variations (kHz QPOs) from XTE J1701-462, a unique X-ray source which was observed in both the so-called Z and atoll states. Correcting for the frequency drift of the QPO, we show that, as in all sources for which such a correction can be applied, the quality factor and rms amplitude drops sharply above a critical frequency. For XTE J1701-462, this frequency is estimated to be ~800 Hz, where the quality factor reaches a maximum of ~200 (e.g., a value consistent with the one observed from more classical systems, such as 4U 1636-536). Such a drop has been interpreted as the signature of the innermost stable circular orbit, and that interpretation is consistent with the observations we report here. The kHz QPOs in the Z state are much less coherent and lower amplitude than they are in the atoll state. We argue that the change of the QPO properties between the two source states is related to the change of the scale height of the accretion disk; a prediction of the toy model proposed by Barret et al. As a by-product of our analysis, we also increased the significance of the upper kHz QPO detected in the atoll phase up to 4.8σ (single trial significance) and show that the frequency separation (266.5 ± 13.1 Hz) is comparable with the one measured from simultaneous twin QPOs in the Z phase.

Surface Profiling and Core Evaluation of Aluminum Honeycomb Sandwich Aircraft Panels Using Multi-Frequency Eddy Current Testing

PubMed Central

Reyno, Tyler; Underhill, P. Ross; Krause, Thomas W.; Marsden, Catharine; Wowk, Diane

2017-01-01

Surface damage on honeycomb aircraft panels is often measured manually, and is therefore subject to variation based on inspection personnel. Eddy current testing (ECT) is sensitive to variations in probe-to-specimen spacing, or lift-off, and is thus promising for high-resolution profiling of surface damage on aluminum panels. Lower frequency testing also allows inspection through the face sheet, an advantage over optical 3D scanning methods. This paper presents results from the ECT inspection of surface damage on an approximately flat aluminum honeycomb aircraft panel, and compares the measurements to those taken using optical 3D scanning technology. An ECT C-Scan of the dented panel surface was obtained by attaching the probe to a robotic scanning apparatus. Data was taken simultaneously at four frequencies of 25, 100, 400 and 1600 kHz. A reference surface was then defined that approximated the original, undamaged panel surface, which also compensated for the effects of specimen tilt and thermal drift within the ECT instrument. Data was converted to lift-off using height calibration curves developed for each probe frequency. A damage region of 22,550 mm2 area with dents ranging in depth from 0.13–1.01 mm was analyzed. The method was accurate at 1600 kHz to within 0.05 mm (2σ) when compared with 231 measurements taken via optical 3D scanning. Testing at 25 kHz revealed a 3.2 mm cell size within the honeycomb core, which was confirmed via destructive evaluation. As a result, ECT demonstrates potential for implementation as a method for rapid in-field aircraft panel surface damage assessment. PMID:28906434

Surface Profiling and Core Evaluation of Aluminum Honeycomb Sandwich Aircraft Panels Using Multi-Frequency Eddy Current Testing.

PubMed

Reyno, Tyler; Underhill, P Ross; Krause, Thomas W; Marsden, Catharine; Wowk, Diane

2017-09-14

Surface damage on honeycomb aircraft panels is often measured manually, and is therefore subject to variation based on inspection personnel. Eddy current testing (ECT) is sensitive to variations in probe-to-specimen spacing, or lift-off, and is thus promising for high-resolution profiling of surface damage on aluminum panels. Lower frequency testing also allows inspection through the face sheet, an advantage over optical 3D scanning methods. This paper presents results from the ECT inspection of surface damage on an approximately flat aluminum honeycomb aircraft panel, and compares the measurements to those taken using optical 3D scanning technology. An ECT C-Scan of the dented panel surface was obtained by attaching the probe to a robotic scanning apparatus. Data was taken simultaneously at four frequencies of 25, 100, 400 and 1600 kHz. A reference surface was then defined that approximated the original, undamaged panel surface, which also compensated for the effects of specimen tilt and thermal drift within the ECT instrument. Data was converted to lift-off using height calibration curves developed for each probe frequency. A damage region of 22,550 mm² area with dents ranging in depth from 0.13-1.01 mm was analyzed. The method was accurate at 1600 kHz to within 0.05 mm (2σ) when compared with 231 measurements taken via optical 3D scanning. Testing at 25 kHz revealed a 3.2 mm cell size within the honeycomb core, which was confirmed via destructive evaluation. As a result, ECT demonstrates potential for implementation as a method for rapid in-field aircraft panel surface damage assessment.

Broad-band beam buncher

DOEpatents

Goldberg, D.A.; Flood, W.S.; Arthur, A.A.; Voelker, F.

1984-03-20

A broad-band beam bunther is disclosed, comprising an evacuated housing, an electron gun therein for producing an electron beam, a buncher cavity having entrance and exit openings through which the beam is directed, grids across such openings, a source providing a positive DC voltage between the cavity and the electron gun, a drift tube through which the electron beam travels in passing through such cavity, grids across the ends of such drift tube, gaps being provided between the drift tube grids and the entrance and exit grids, a modulator for supplying an ultrahigh frequency modulating signal to the drift tube for producing velocity modulation of the electrons in the beam, a drift space in the housing through which the velocity modulated electron beam travels and in which the beam is bunched, and a discharge opening from such drift tube and having a grid across such opening through which the bunched electron beam is discharged into an accelerator or the like. The buncher cavity and the drift tube may be arranged to constitute an extension of a coaxial transmission line which is employed to deliver the modulating signal from a signal source. The extended transmission line may be terminated in its characteristic impedance to afford a broad-

Electrostatic ion-cyclotron waves in a nonuniform magnetic field

NASA Technical Reports Server (NTRS)

Cartier, S. L.; Dangelo, N.; Merlino, R. L.

1985-01-01

The properties of electrostatic ion-cyclotron waves excited in a single-ended cesium Q machine with a nonuniform magnetic field are described. The electrostatic ion-cyclotron waves are generated in the usual manner by drawing an electron current to a small exciter disk immersed in the plasma column. The parallel and perpendicular (to B) wavelengths and phase velocities are determined by mapping out two-dimensional wave phase contours. The wave frequency f depends on the location of the exciter disk in the nonuniform magnetic field, and propagating waves are only observed in the region where f is approximately greater than fci, where fci is the local ion-cyclotron frequency. The parallel phase velocity is in the direction of the electron drift. From measurements of the plasma properties along the axis, it is inferred that the electron drift velocity is not uniform along the entire current channel. The evidence suggests that the waves begin being excited at that axial position where the critical drift velocity is first exceeded, consistent with a current-driven excitation mechanism.

Collisional transport across the magnetic field in drift-fluid models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Madsen, J., E-mail: jmad@fysik.dtu.dk; Naulin, V.; Nielsen, A. H.

2016-03-15

Drift ordered fluid models are widely applied in studies of low-frequency turbulence in the edge and scrape-off layer regions of magnetically confined plasmas. Here, we show how collisional transport across the magnetic field is self-consistently incorporated into drift-fluid models without altering the drift-fluid energy integral. We demonstrate that the inclusion of collisional transport in drift-fluid models gives rise to diffusion of particle density, momentum, and pressures in drift-fluid turbulence models and, thereby, obviates the customary use of artificial diffusion in turbulence simulations. We further derive a computationally efficient, two-dimensional model, which can be time integrated for several turbulence de-correlation timesmore » using only limited computational resources. The model describes interchange turbulence in a two-dimensional plane perpendicular to the magnetic field located at the outboard midplane of a tokamak. The model domain has two regions modeling open and closed field lines. The model employs a computational expedient model for collisional transport. Numerical simulations show good agreement between the full and the simplified model for collisional transport.« less

Effects of Drift-Shell Splitting by Chorus Waves on Radiation Belt Electrons

NASA Astrophysics Data System (ADS)

Chan, A. A.; Zheng, L.; O'Brien, T. P., III; Tu, W.; Cunningham, G.; Elkington, S. R.; Albert, J.

2015-12-01

Drift shell splitting in the radiation belts breaks all three adiabatic invariants of charged particle motion via pitch angle scattering, and produces new diffusion terms that fully populate the diffusion tensor in the Fokker-Planck equation. Based on the stochastic differential equation method, the Radbelt Electron Model (REM) simulation code allows us to solve such a fully three-dimensional Fokker-Planck equation, and to elucidate the sources and transport mechanisms behind the phase space density variations. REM has been used to perform simulations with an empirical initial phase space density followed by a seed electron injection, with a Tsyganenko 1989 magnetic field model, and with chorus wave and ULF wave diffusion models. Our simulation results show that adding drift shell splitting changes the phase space location of the source to smaller L shells, which typically reduces local electron energization (compared to neglecting drift-shell splitting effects). Simulation results with and without drift-shell splitting effects are compared with Van Allen Probe measurements.

Atomic clocks and the continuous-time random-walk

NASA Astrophysics Data System (ADS)

Formichella, Valerio; Camparo, James; Tavella, Patrizia

2017-11-01

Atomic clocks play a fundamental role in many fields, most notably they generate Universal Coordinated Time and are at the heart of all global navigation satellite systems. Notwithstanding their excellent timekeeping performance, their output frequency does vary: it can display deterministic frequency drift; diverse continuous noise processes result in nonstationary clock noise (e.g., random-walk frequency noise, modelled as a Wiener process), and the clock frequency may display sudden changes (i.e., "jumps"). Typically, the clock's frequency instability is evaluated by the Allan or Hadamard variances, whose functional forms can identify the different operative noise processes. Here, we show that the Allan and Hadamard variances of a particular continuous-time random-walk, the compound Poisson process, have the same functional form as for a Wiener process with drift. The compound Poisson process, introduced as a model for observed frequency jumps, is an alternative to the Wiener process for modelling random walk frequency noise. This alternate model fits well the behavior of the rubidium clocks flying on GPS Block-IIR satellites. Further, starting from jump statistics, the model can be improved by considering a more general form of continuous-time random-walk, and this could bring new insights into the physics of atomic clocks.

Quantification of the Precipitation Loss of Radiation Belt Electrons Observed by SAMPEX (Invited)

NASA Astrophysics Data System (ADS)

Tu, W.; Li, X.; Selesnick, R. S.; Looper, M. D.

2010-12-01

Based on SAMPEX/PET observations, the fluxes and the spatial and temporal variations of electron loss to the atmosphere in the Earth’s radiation belt were quantified using a drift-diffusion model that includes the effects of azimuthal drift and pitch angle diffusion. The measured electrons by SAMPEX can be distinguished as trapped, quasi-trapped (in the drift loss cone), or precipitating (in the bounce loss cone), and the model simulates the low-altitude electron distribution from SAMPEX. After fitting the model results to the data, the magnitudes and variations of the electron loss rate can be estimated based on the optimum model parameter values. In this presentation we give an overview of our method and published results, followed by some recent improvements we made on the model, including updating the quantified electron lifetimes more frequently (e.g., every two hours instead of half a day) to achieve smoother variations, estimating the adiabatic effects at SAMPEX’s orbit and their influence on our model results, and calculating the error bar associated with each quantified electron lifetime. This method combining a model with low-altitude observations provides direct quantification of the electron loss rate, as required for any accurate modeling of the radiation belt electron dynamics.

Robust interferometric frequency lock between cw lasers and optical frequency combs.

PubMed

Benkler, Erik; Rohde, Felix; Telle, Harald R

2013-02-15

A transfer interferometer is presented which establishes a versatile and robust optical frequency locking link between a tunable single frequency laser and an optical frequency comb. It enables agile and continuous tuning of the frequency difference between both lasers while fluctuations and drift effects of the transfer interferometer itself are widely eliminated via common mode rejection. Experimental results will be presented for a tunable extended-cavity 1.5 μm laser diode locked to an Er-fiber based frequency comb.

Relationships Between the Performance of Time/Frequency Standards and Navigation/Communication Systems

NASA Technical Reports Server (NTRS)

Hellwig, H.; Stein, S. R.; Walls, F. L.; Kahan, A.

1978-01-01

The relationship between system performance and clock or oscillator performance is discussed. Tradeoffs discussed include: short term stability versus bandwidth requirements; frequency accuracy versus signal acquisition time; flicker of frequency and drift versus resynchronization time; frequency precision versus communications traffic volume; spectral purity versus bit error rate, and frequency standard stability versus frequency selection and adjustability. The benefits and tradeoffs of using precise frequency and time signals are various levels of precision and accuracy are emphasized.

Explanation of observable secular variations of gravity and alternative methods of determination of drift of the center of mass of the Earth

NASA Astrophysics Data System (ADS)

Barkin, Yury

2010-05-01

The summary. On the basis of geodynamic model of the forced relative displacement of the centers of mass of the core and the mantle of the Earth the secular variations of a gravity and heights of some gravimetry stations on a surface of the Earth have ben studied. At the account of secular drift of the center of mass of the Earth which on our geodynamic model is caused by the unidirectional drift of the core of the Earth relatively to the mantle, the full explanation is given to observable secular variations of a gravity at stations Ny-Alesund (Norway), Churchill (Canada), Medicine (Italy), Sayowa (Antarctica), Strastburg (France), Membach (Belgium), Wuhan (China) and Metsahovi (Finland). Two new methods of determination of secular drift of the center of mass of the Earth, alternative to classical method of a space geodesy are offered: 1) on the basis of gravimetry data about secular trends of a gravity at the stations located on all basic regions of the Earth; 2) on the basis of the comparative analysis of altimetry and coastal data about secular changes of sea level also in basic regions of ocean. 1. Secular drift of the center of mass of the core and the center of mass of the Earth. A secular drift of the center of mass of the Earth to the North relatively to special center O on an axis of rotation of the Earth for which the coefficient of third zonal harmonic J3' = 0, has been predicted in the author work [1]. A drift in a direction to a geographical point (pole P) 70°0 N and 104°3 E has been established for the first time theoretically - as a result of the analysis of the global directed redistribution of masses of the Earth, explaining the observed secular drift of the pole of an axis of rotation of the Earth and not tidal acceleration of its axial rotation [2]. In [1] velocity of drift it has been estimated in 1-2 cm/yr. For specified center O the figure of a planet is as though deprived of pure-shaped form (J3' = 0). And in this sense the point O can be conditionally corresponded to the geocenter of the Earth approximately determined by position of stations of satellite observations, as the center of certain mantle systems of coordinates Oxyz. For an explanation of such significant drift of the center of mass of the Earth the mechanism of the unidirectional displacement of the core of the Earth (and its center of mass) relatively to a viscoelastic mantle [1, 2] has been offered. The next years attempts of determination of velocity of secular drift of the center of mass in the mantle reference frame by methods of a space geodesy on the basis of precision satellite observations were repeatedly undertaken. In our work [3] for determination of a trend of the center of mass the data of the International Service of Rotation of the Earth (IERS) for satellite observations of system DORIS have been used. For components of velocity of drift in geocentric Greenwich system of coordinates for period 1999-2007 estimations have been obtained: on coordinate x) -1.46 mm/yr, y) 0.79 mm/yr and z) 5.29 mm/yr (errors of the specified estimations make 5-10 %). The velocity of trend of the center of mass of the Earth and its direction are characterized by values: 5.54 mm/yr; latitude 72°6 N and a longitude 118°4 E. The direction of displacement of the center of mass will well be coordinated with a direction predicted earlier theoretically [2]: latitude 70° N and a longitude 104° E. We shall emphasize, that observable redistributions of superficial masses of the Earth explain only small part of observable displacement of the center of mass. It testifies in favour of a reality of secular relative displacement of the core and the mantle of the Earth. 2 Secular drift of the core to the North and variations of a gravity on the Earth surface. The displaced core of the Earth is characterized by the large superfluous mass approximately in 16.7 masses of the Moon. The superfluous mass is ditermined by contrast values of average densities of the core and the mantle and makes 19.32 % of mass of full the Earth. At displacement of the core relatively to the viscous-elastic mantle its superfluous mass causes observable drift of the center of mass, and also leads to changes of a gravity on the surface of the planet. Except for it the gravitational attraction of a displaced core causes deformations of all layers of the mantle, including a superficial layer. The deformed mantle produses some additional gravitational potential which gives the additional contribution to value of a gravity. Thus, noted factors lead to a secular variation of a gravity which is described by the simple formula [2]: dot g = 2gμmc-(1- h-2- 0.5k-2)ρdot-sin?, μmc = 0.1932m ⊙, g = 9.82022 m -s2 m ⊙ r⊙ (1) Here μmc = 0.1932m⊙ is a superflous mass of the Earth core in the masses of the Earth m⊙. g is an acceleration of free falling. k-2 and h-2 are Love numbers of the order (-2). ρdot is a velocity of the secular drift of the center of mass of the core relatively to the center of mass of the mantle. ?is an angle between dirtection to the pole P (in a direction to which the core of the Earth or its center of mass drifts), and direction to gravimetric station. For rough estimates of gravimetric effects as pole P the North Pole of the Earth has been accepted. Thus ? = ?-2 - φis a co-latitude. At more exact description of the core drift (or the center of mass drift) an angle? is determined by formula: cos? = cosφP cosφcos(λP - λ) + sinφP sinφ, where φP and λP is a latitude and longitude of pole P; φ and λ is a latitude and longitude of station. The Love numbers of the order (-2) in first have been evaluated in the paper [4] and have small values: k-2=-0.005004 and h-2=0.0062154. Approximately we can put ρdot m⊙ = μmcṙC, where ṙC is a velocity of the drift of the center of mass of the Earth. Then, neglecting small effects, for a variation of gravity (1) we obtain a following expression: ? r = 2ṙCg cos?-r⊙. Leaning on results of works [2], [3], we shall accept the following values of parameters of drift of the center of mass: ṙC=5.54 mm/yr, φP=70°0 N, λP=104°3 E. On the other hand a displacement of the center of mass of the Earth leads to effect of slow change of heights of gravimetric station: ḣ = -?dotC cos? = -5.54 × cos? mm/yr. Errors in determination of the specified characteristics in the given work we shall neglect. Besides the gravitational attraction of a displaced core leads also to effect of increase of horizontal component of gravitational force of an attraction of the Earth on its surface directed to the North along the corresponding meridian with pole P. For any point of a surface of the Earth this component of force is determined by the formula ?φ = ṙCg sin?-r⊙ and has positive values. And the maximal values ?φ are reached on equator, which plane is orthogonal to axes of drift of the core OP. Thus, final working formulas for studying of secular variations of components of force of a gravitational attraction of the Earth and for a variation of the heights caused by a drift of the center of mass of the Earth become: ?r = 1.74cos?-r⊙ ?Gal/yr, ?φ = 0.87sin?-r⊙ ?Gal/yr, ḣ = -5.54cos?-r⊙ mm/yr. Calculated values of mentioned gravimetric characteristics (2) for the wide list of gravimetry stations are resulted in work [5] and used in the given work. 3 Explanation of observable secular variations of a gravity and heights on gravimetric stations. We have been analysed observed variations of a gravity and heights available and accessible to us, namely their secular changes, for 8 known gravimetry stations. The periods of observations at mentioned stations make the order of 5-10 years, i.e. are not greater, but nevertheless the obtained results unequivocally testify in favour of that the basic contribution to secular variations of a gravity gives the drifting core of the Earth (by means of direct gravitational influence and due to a contribution to corresponding variations of heights). In the given work we did not consider other factors influencing on gravimetric measurements (superficial redistributions of fluid masses, variations of coefficients of the second and higher harmonics of a geopotential, etc.). As an example here we shall analyse secular variations of a gravity and heights at Ny-Alesund station (geographical coordinates: 78°93 N, 11°87 E, ? =23°16). Linear trends of a gravity and height observable at this station make -2.5±0.9 ?Gal/yr and + (6.9±0.9) mm/yr, accordingly, during 1998-2002 (Sato et.al., 2006). On our model a slow closing of the core to the Ny-Alesund station causes a positive variation of a gravity in 1.60 ?Gal/yr and a negative variation of height of station in -5.09 mm/yr [5]. These data testify a deformation of a surface of the Earth in area of station with a velocity +11.99±0.9 mm/yr owing to which the gravity tests a negative variation -3.74±0.28 ?Gal/yr. Putting effects of a variation of a gravity because of displacement of the core and from deformation of a surface, we obtain negative value for secular trend of gravity in - (2.14±0.28) ?Gal/yr, that within the limits of errors it will be coordinated with observable value - (2.5±0.9) ?Gal/yr. Similar results we have obtained for 7 another's gravimetric stations. All results are summarized in the table 1. Here we have used known data about observable secular trends of gravity and GPS heights at considered here stations of the following authors: Ny-Alesund (Sato et al., 2006); Churchill (Larson et al., 2000); Medicine (Zerbini et al., 2001); Syowa (Fukuda et.al., 2007); Strastburg (Almavict et. al., 2004); Membach (Francis et al., 2004); Wuhan (Xu et al., 2008); Metsahovi (Gitlein et. al., 2009). Table 1. Theoretical and observable values of secular variations of a gravity. Stations Core attractionSurface deformation Theory Observations Ny-Alesund+1.60 ?Gal/yr -(3.77±0.09) ?Gal/yr -(2.17±0.03) ?Gal/yr -(2.5±0.9) ?Gal/yr Churchill +1.11 ?Gal/yr -(3.38±0.28) ?Gal/yr -(2.22±0.28) ?Gal/yr -(2.13±0.23) ?Gal/yr Medicina +1.13 ?Gal/yr +(1.07±0.20) ?Gal/yr+(2.20±0.20) ?Gal/yr+(1.90±0.20) ?Gal/yr Syowa -1.44 ?Gal/yr +(0.63±0.08) ?Gal/yr-(0.81±0.08) ?Gal/yr -0.56 ?Gal/yr Strastburg +1.18 ?Gal/yr +(0.71±0.02) ?Gal/yr+(1.89±0.02) ?Gal/yr+(1.90±0.20) ?Gal/yr Membach +1.21 ?Gal/yr -(1.98±0.16) ?Gal/yr -(0.77±0.16) ?Gal/yr -(0.6±0.1) ?Gal/yr Wuhan +1.34 ?Gal/yr -(0.17±0.05) ?Gal/yr +(1.17±0.05) ?Gal/yr+(1.39±0.02) ?Gal/yr Metsahovi +1.47 ?Gal/yr -(2.82±0.06) ?Gal/yr +(1.35±0.06) ?Gal/yr-(0.88±0.52) ?Gal/yr

Scram signal generator

DOEpatents

Johanson, Edward W.; Simms, Richard

1981-01-01

A scram signal generating circuit for nuclear reactor installations monitors a flow signal representing the flow rate of the liquid sodium coolant which is circulated through the reactor, and initiates reactor shutdown for a rapid variation in the flow signal, indicative of fuel motion. The scram signal generating circuit includes a long-term drift compensation circuit which processes the flow signal and generates an output signal representing the flow rate of the coolant. The output signal remains substantially unchanged for small variations in the flow signal, attributable to long term drift in the flow rate, but a rapid change in the flow signal, indicative of a fast flow variation, causes a corresponding change in the output signal. A comparator circuit compares the output signal with a reference signal, representing a given percentage of the steady state flow rate of the coolant, and generates a scram signal to initiate reactor shutdown when the output signal equals the reference signal.

Scram signal generator

DOEpatents

Johanson, E.W.; Simms, R.

A scram signal generating circuit for nuclear reactor installations monitors a flow signal representing the flow rate of the liquid sodium coolant which is circulated through the reactor, and initiates reactor shutdown for a rapid variation in the flow signal, indicative of fuel motion. The scram signal generating circuit includes a long-term drift compensation circuit which processes the flow signal and generates an output signal representing the flow rate of the coolant. The output signal remains substantially unchanged for small variations in the flow signal, attributable to long term drift in the flow rate, but a rapid change in the flow signal, indicative of a fast flow variation, causes a corresponding change in the output signal. A comparator circuit compares the output signal with a reference signal, representing a given percentage of the steady state flow rate of the coolant, and generates a scram signal to initiate reactor shutdown when the output signal equals the reference signal.

Disrupting evolutionary processes: the effect of habitat fragmentation on collared lizards in the Missouri Ozarks.

PubMed

Templeton, A R; Robertson, R J; Brisson, J; Strasburg, J

2001-05-08

Humans affect biodiversity at the genetic, species, community, and ecosystem levels. This impact on genetic diversity is critical, because genetic diversity is the raw material of evolutionary change, including adaptation and speciation. Two forces affecting genetic variation are genetic drift (which decreases genetic variation within but increases genetic differentiation among local populations) and gene flow (which increases variation within but decreases differentiation among local populations). Humans activities often augment drift and diminish gene flow for many species, which reduces genetic variation in local populations and prevents the spread of adaptive complexes outside their population of origin, thereby disrupting adaptive processes both locally and globally within a species. These impacts are illustrated with collared lizards (Crotaphytus collaris) in the Missouri Ozarks. Forest fire suppression has reduced habitat and disrupted gene flow in this lizard, thereby altering the balance toward drift and away from gene flow. This balance can be restored by managed landscape burns. Some have argued that, although human-induced fragmentation disrupts adaptation, it will also ultimately produce new species through founder effects. However, population genetic theory and experiments predict that most fragmentation events caused by human activities will facilitate not speciation, but local extinction. Founder events have played an important role in the macroevolution of certain groups, but only when ecological opportunities are expanding rather than contracting. The general impact of human activities on genetic diversity disrupts or diminishes the capacity for adaptation, speciation, and macroevolutionary change. This impact will ultimately diminish biodiversity at all levels.

Measurement of ultra-low power oscillators using adaptive drift cancellation with applications to nano-magnetic spin torque oscillators.

PubMed

Tamaru, S; Ricketts, D S

2013-05-01

This work presents a technique for measuring ultra-low power oscillator signals using an adaptive drift cancellation method. We demonstrate this technique through spectrum measurements of a sub-pW nano-magnet spin torque oscillator (STO). We first present a detailed noise analysis of the standard STO characterization apparatus to estimate the background noise level, then compare these results to the noise level of three measurement configurations. The first and second share the standard configuration but use different spectrum analyzers (SA), an older model and a state-of-the-art model, respectively. The third is the technique proposed in this work using the same old SA as for the first. Our results show that the first and second configurations suffer from a large drift that requires ~30 min to stabilize each time the SA changes the frequency band, even though the SA has been powered on for longer than 24 h. The third configuration introduced in this work, however, shows absolutely no drift as the SA changes frequency band, and nearly the same noise performance as with a state-of-the-art SA, thus providing a reliable method for measuring very low power signals for a wide variety of applications.

Electrostatic Wave Generation and Transverse Ion Acceleration by Alfvenic Wave Components of BBELF Turbulence

NASA Technical Reports Server (NTRS)

Singh, Nagendra; Khazanov, George; Mukhter, Ali

2007-01-01

We present results here from 2.5-D particle-in-cell simulations showing that the electrostatic (ES) components of broadband extremely low frequency (BBELF) waves could possibly be generated by cross-field plasma instabilities driven by the relative drifts between the heavy and light ion species in the electromagnetic (EM) Alfvenic component of the BBELF waves in a multi-ion plasma. The ES components consist of ion cyclotron as well as lower hybrid modes. We also demonstrate that the ES wave generation is directly involved in the transverse acceleration of ions (TAI) as commonly measured with the BBELF wave events. The heating is affected by ion cyclotron resonance in the cyclotron modes and Landau resonance in the lower hybrid waves. In the simulation we drive the plasma by the transverse electric field, E(sub y), of the EM waves; the frequency of E(sub y), omega(sub d), is varied from a frequency below the heavy ion cyclotron frequency, OMEGA(sub h), to below the light ion cyclotron frequency, OMEGA(sub i). We have also performed simulations for E(sub y) having a continuous spectrum given by a power law, namely, |Ey| approx. omega(sub d) (exp -alpha), where the exponent alpha = _, 1, and 2 in three different simulations. The driving electric field generates polarization and ExB drifts of the ions and electrons. When the interspecies relative drifts are sufficiently large, they drive electrostatic waves, which cause perpendicular heating of both light and heavy ions. The transverse ion heating found here is discussed in relation to observations from Cluster, FAST and Freja.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Albert, Christopher G.; Heyn, Martin F.; Kapper, Gernot

Toroidal torque generated by neoclassical viscosity caused by external non-resonant, non-axisymmetric perturbations has a significant influence on toroidal plasma rotation in tokamaks. In this article, a derivation for the expressions of toroidal torque and radial transport in resonant regimes is provided within quasilinear theory in canonical action-angle variables. The proposed approach treats all low-collisional quasilinear resonant neoclassical toroidal viscosity regimes including superbanana-plateau and drift-orbit resonances in a unified way and allows for magnetic drift in all regimes. It is valid for perturbations on toroidally symmetric flux surfaces of the unperturbed equilibrium without specific assumptions on geometry or aspect ratio. Themore » resulting expressions are shown to match the existing analytical results in the large aspect ratio limit. Numerical results from the newly developed code NEO-RT are compared to calculations by the quasilinear version of the code NEO-2 at low collisionalities. The importance of the magnetic shear term in the magnetic drift frequency and a significant effect of the magnetic drift on drift-orbit resonances are demonstrated.« less

Premolar and molar rotation in wild Japanese serow populations on Honshu Island, Japan.

PubMed

Natsume, Asuka; Koyasu, Kazuhiro; Oda, Sen-ichi; Nakagaki, Haruo; Hanamura, Hajime

2006-11-01

The skulls of 1195 Japanese serow (Capricornis crispus) from six geographically distinct populations were examined for tooth rotation. Our objectives were to determine tooth rotation patterns in Japanese serows, investigate geographical variation in tooth rotation and examine whether space limitations in the jaw accounted for variations. We then sought to explain the origin of tooth rotation in the Japanese serow. Rotated teeth were found in 131 specimens (62 males, 57 females and 12 unknown gender), with no statistically significant difference between males and females (chi(2)=0.03, P=0.86, d.f.=1). Among the six populations, the frequency of tooth rotation varied from 3.7-32.1% (average 11.0%). Most tooth rotation occurred in the upper third and fourth premolars. The lingual cusp of anomalous teeth was rotated 30 degrees -90 degrees mesially or distally from the buccolingual tooth axis, and the rotation direction differed among populations. However, we found no difference in skull or tooth morphology between normal individuals and those with tooth rotation. Therefore, hereditary factors may be involved in Japanese serow tooth rotation. We concluded that genetic differentiation occurred in the past among local Japanese serow populations isolated in mountainous habitats. Gene frequencies were likely subject to random drift, especially during possible population bottlenecks, when genetic factors could most strongly affect the direction of rotation.

SeaWiFS on-orbit gain and detector calibrations: effect on ocean products

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eplee, Robert E. Jr.; Patt, Frederick S.; Franz, Bryan A.

The NASA Ocean Biology Processing Group's Calibration and Validation Team has analyzed the mission-long Sea-Viewing Wide Field-of-View Sensor(SeaWiFS) on-orbit gain and detector calibration time series to verify that lunar calibrations, obtained at nonstandard gains and radiance ranges, are valid for Earth data collected at standard gains and typical ocean, cloud,and land radiances. For gain calibrations, a constant voltage injected into the postdetector electronics allows gain ratios to be computed for all four detectors in each band. The on-orbit lunar gain ratio time series show small drifts for the near infrared bands. These drifts are propagated into the ocean color datamore » through the atmospheric correction parameter ?, which uses the765/865 nm band ratio. An anomaly analysis of global mean normalized water-leaving radiances at510 nm shows a small decrease over the mission,while an analysis of ? shows a corresponding increase. The drifts in the lunar time series for the 765 and865 nm bands were corrected. An analysis of the revised water-leaving radiances at510 nm shows the drift has been eliminated,while an analysis of ? shows a reduced drift. For detector calibrations, solar diffuser observations made by the individual detectors in each band allows the response of the detectors to be monitored separately. The mission-long time series of detector calibration data show that the variations in the response of the individual detectors are less than 0.5% over the mission for all bands except the865 nm band, where the variations are less than 1%.« less

Methods and theory in bone modeling drift: comparing spatial analyses of primary bone distributions in the human humerus.

PubMed

Maggiano, Corey M; Maggiano, Isabel S; Tiesler, Vera G; Chi-Keb, Julio R; Stout, Sam D

2016-01-01

This study compares two novel methods quantifying bone shaft tissue distributions, and relates observations on human humeral growth patterns for applications in anthropological and anatomical research. Microstructural variation in compact bone occurs due to developmental and mechanically adaptive circumstances that are 'recorded' by forming bone and are important for interpretations of growth, health, physical activity, adaptation, and identity in the past and present. Those interpretations hinge on a detailed understanding of the modeling process by which bones achieve their diametric shape, diaphyseal curvature, and general position relative to other elements. Bone modeling is a complex aspect of growth, potentially causing the shaft to drift transversely through formation and resorption on opposing cortices. Unfortunately, the specifics of modeling drift are largely unknown for most skeletal elements. Moreover, bone modeling has seen little quantitative methodological development compared with secondary bone processes, such as intracortical remodeling. The techniques proposed here, starburst point-count and 45° cross-polarization hand-drawn histomorphometry, permit the statistical and populational analysis of human primary tissue distributions and provide similar results despite being suitable for different applications. This analysis of a pooled archaeological and modern skeletal sample confirms the importance of extreme asymmetry in bone modeling as a major determinant of microstructural variation in diaphyses. Specifically, humeral drift is posteromedial in the human humerus, accompanied by a significant rotational trend. In general, results encourage the usage of endocortical primary bone distributions as an indicator and summary of bone modeling drift, enabling quantitative analysis by direction and proportion in other elements and populations. © 2015 Anatomical Society.

The climatology of low-latitude ionospheric densities and zonal drifts from IMAGE-FUV.

NASA Astrophysics Data System (ADS)

Immel, T. J.; Sagawa, E.; Frey, H. U.; Mende, S. B.; Patel, J.

2004-12-01

The IMAGE satellite was the first dedicated to magnetospheric imaging, but has also provided numerous images of the nightside ionosphere with its Far-Ultraviolet (FUV) spectrographic imager. Nightside emissions of O I at 135.6-nm originating away from the aurora are due to recombination of ionospheric O+, and vary in intensity with (O+)2. IMAGE-FUV, operating in a highly elliptical orbit with apogee at middle latitudes and >7 Re altitude, measures this emission globally with 100-km resolution. During each 14.5 hour orbit, IMAGE-FUV is able to monitor nightside ionospheric densities for up to 6-7 hours. Hundreds of low-latitude ionospheric bubbles, their development and drift speed, and a variety of other dynamical variations in brightness and morphology of the equatorial anomalies have been observed during this mission. Furthermore, the average global distribution of low-latitude ionospheric plasma densities can be determined in 3 days. Imaging data collected from February through June of 2002 are used to compile a dataset containing a variety of parameters (e.g., latitude and brightness of peak plasma density, zonal bubble drift speed) which can be drawn from for climatological studies. Recent results indicate that the average ground speed of low-latitude zonal plasma drifts vary with longitude by up to 50%, and that a periodic variation in ionospheric densities with longitude suggests the influence of a lower-thermospheric non-migrating tide with wave number = 4 on ionospheric densities. An excellent correlation between zonal drift speed and the magnetic storm index Dst is also found.

Effect of temperature degeneracy and Landau quantization on drift solitary waves and double layers

NASA Astrophysics Data System (ADS)

Shan, Shaukat Ali; Haque, Q.

2018-01-01

The linear and nonlinear drift ion acoustic waves have been investigated in an inhomogeneous, magnetized, dense degenerate, and quantized magnetic field plasma. The linear drift ion acoustic wave propagation along with the nonlinear structures like double layers and solitary waves has been found to be strongly dependent on the drift speed, magnetic field quantization parameter β, and the temperature degeneracy. The graphical illustrations show that the frequency of linear waves and the amplitude of the solitary waves increase with the increase in temperature degeneracy and Landau quantization effect, while the amplitude of the double layers decreases with the increase in η and T. The relevance of the present study is pointed out in the plasma environment of fast ignition inertial confinement fusion, the white dwarf stars, and short pulsed petawatt laser technology.

Outer heliospheric radio emissions. II - Foreshock source models

NASA Technical Reports Server (NTRS)

Cairns, Iver H.; Kurth, William S.; Gurnett, Donald A.

1992-01-01

Observations of LF radio emissions in the range 2-3 kHz by the Voyager spacecraft during the intervals 1983-1987 and 1989 to the present while at heliocentric distances greater than 11 AU are reported. New analyses of the wave data are presented, and the characteristics of the radiation are reviewed and discussed. Two classes of events are distinguished: transient events with varying starting frequencies that drift upward in frequency and a relatively continuous component that remains near 2 kHz. Evidence for multiple transient sources and for extension of the 2-kHz component above the 2.4-kHz interference signal is presented. The transient emissions are interpreted in terms of radiation generated at multiples of the plasma frequency when solar wind density enhancements enter one or more regions of a foreshock sunward of the inner heliospheric shock. Solar wind density enhancements by factors of 4-10 are observed. Propagation effects, the number of radiation sources, and the time variability, frequency drift, and varying starting frequencies of the transient events are discussed in terms of foreshock sources.

Drift resonance and stability of the Io plasma torus

NASA Astrophysics Data System (ADS)

Zhan, Jie; Hill, T. W.

2000-03-01

The observed local time asymmetry of the Io plasma torus is generally attributed to the presence of a persistent dawn-to-dusk electric field in the Jovian magnetosphere. The local time asymmetry is modulated at the System 3 rotation period of Jupiter's magnetic field, suggesting that the dawn-to-dusk electric field may be similarly modulated. We argue that such a System 3 modulation would have a profound disruptive effect on the observed torus structure if the torus were to corotate at exactly the System 3 rate: the torus would be a resonantly forced harmonic oscillator, and would disintegrate in a few rotation periods, contrary to observations. This destabilizing effect is independent of, and in addition to, the more familiar effect of the centrifugal interchange instability, which is also capable of disrupting the torus in a few rotation periods in the absence of other effects. We conclude that the observed (few percent) corotation lag of the torus is essential to preserving the observed long-lived torus structure by detuning the resonant frequency (the torus drift frequency) relative to the forcing frequency (System 3). A possible outcome of this confinement mechanism is a residual radial oscillation of the torus at the beat period (~10 days) between System 3 and the torus drift period.

Blubber and buoyancy: monitoring the body condition of free-ranging seals using simple dive characteristics.

PubMed

Biuw, Martin; McConnell, Bernie; Bradshaw, Corey J A; Burton, Harry; Fedak, Mike

2003-10-01

Elephant seals regularly perform dives during which they spend a large proportion of time drifting passively through the water column. The rate of vertical change in depth during these "drift" dives is largely a result of the proportion of lipid tissue in the body, with fatter seals having higher (more positive or less negative) drift rates compared with leaner seals. We examined the temporal changes in drift rates of 24 newly weaned southern elephant seal (Mirounga leonina) pups during their first trip to sea to determine if this easily recorded dive characteristic can be used to continuously monitor changes in body composition of seals throughout their foraging trips. All seals demonstrated a similar trend over time: drift rates were initially positive but decreased steadily over the first 30-50 days after departure (Phase 1), corresponding to seals becoming gradually less buoyant. Over the following approximately 100 days (Phase 2), drift rates again increased gradually, while during the last approximately 20-45 days (Phase 3) drift rates either remained constant or decreased slightly. The daily rate of change in drift rate was negatively related to the daily rate of horizontal displacement (daily travel rate), and daily travel rates of more than approximately 80 km were almost exclusively associated with negative changes in drift rate. We developed a mechanistic model based on body compositions and morphometrics measured in the field, published values for the density of seawater and various body components, and values of drag coefficients for objects of different shapes. We used this model to examine the theoretical relationships between drift rate and body composition and carried out a sensitivity analysis to quantify errors and biases caused by varying model parameters. While variations in seawater density and uncertainties in estimated body surface area and volume are unlikely to result in errors in estimated lipid content of more than +/-2.5%, variations in drag coefficient can lead to errors of >or =10%. Finally, we compared the lipid contents predicted by our model with the lipid contents measured using isotopically labelled water and found a strong positive correlation. The best-fitting model suggests that the drag coefficient of seals while drifting passively is between approximately 0.49 (roughly corresponding to a sphere-shaped object) and 0.69 (a prolate spheroid), and we were able to estimate relative lipid content to within approximately +/-2% lipid. Our results suggest that this simple method can be used to estimate the changes in lipid content of free-ranging seals while at sea and may help improve our understanding of the foraging strategies of these important marine predators.

Erratum: ``Evidence that a Deep Meridional Flow Sets the Sunspot Cycle Period'' (ApJ, 589, 665 [2003])

NASA Astrophysics Data System (ADS)

Hathaway, David H.; Nandy, Dibyendu; Wilson, Robert M.; Reichmann, Edwin J.

2004-02-01

An error was made in entering the data used in Figure 6. This changes the results concerning the length of the time lag between the variations in the meridional flow speed and those in the cycle amplitude. The final paragraph on page 667 should read: ``Finally, we study the relationship between the drift velocities and the amplitudes of the hemisphere/cycles. In Figure 5 we compare the drift velocity at the maximum of the cycle to the amplitude of that cycle for that hemisphere. There is a positive (0.5) and significant (95%) correlation between the two. However, an even stronger relationship is found between the drift velocity and the amplitude of the N+2 cycle. The correlation is stronger (0.7) and more significant (99%), as shown in Figure 6. This relationship is suggestive of a ``memory'' in the solar cycle, again a property of dynamo models that use meridional circulation. Indeed, the two-cycle lag is precisely the relationship found by Charbonneau & Dikpati (ApJ, 589, 665 [2003]). This behavior is, however, more difficult to interpret, and we elaborate on this in the next section. In either case, these correlations only explain part of the variance in cycle amplitude (25% for the current cycle and 50% for the N+2 cycle). Obviously, other mechanisms, such as variations in the gradient in the rotation rate, also contribute to the cycle amplitude variations. Our investigation of possible connections between drift rates and the amplitudes of the N+1 and N+3 cycles gives no significant correlations at these alternative time lags.'' The revised Figure 6 and its caption are given below

An adaptive compensation algorithm for temperature drift of micro-electro-mechanical systems gyroscopes using a strong tracking Kalman filter.

PubMed

Feng, Yibo; Li, Xisheng; Zhang, Xiaojuan

2015-05-13

We present an adaptive algorithm for a system integrated with micro-electro-mechanical systems (MEMS) gyroscopes and a compass to eliminate the influence from the environment, compensate the temperature drift precisely, and improve the accuracy of the MEMS gyroscope. We use a simplified drift model and changing but appropriate model parameters to implement this algorithm. The model of MEMS gyroscope temperature drift is constructed mostly on the basis of the temperature sensitivity of the gyroscope. As the state variables of a strong tracking Kalman filter (STKF), the parameters of the temperature drift model can be calculated to adapt to the environment under the support of the compass. These parameters change intelligently with the environment to maintain the precision of the MEMS gyroscope in the changing temperature. The heading error is less than 0.6° in the static temperature experiment, and also is kept in the range from 5° to -2° in the dynamic outdoor experiment. This demonstrates that the proposed algorithm exhibits strong adaptability to a changing temperature, and performs significantly better than KF and MLR to compensate the temperature drift of a gyroscope and eliminate the influence of temperature variation.

Neutral processes contribute to patterns of spatial variation for flower colour in the Mediterranean Iris lutescens (Iridaceae)

PubMed Central

Wang, Hui; Talavera, María; Min, Ya; Flaven, Elodie; Imbert, Eric

2016-01-01

Background and Aims Flower colour polymorphism in plants has been used as a classic model for understanding the importance of neutral processes vs. natural selection in population differentiation. However, current explanations for the maintenance of flower colour polymorphism mainly rely on balancing selection, while neutral processes have seldom been championed. Iris lutescens (Iridaceae) is a widespread species in the northern Mediterranean basin, which shows a stable and striking purple–yellow flower colour polymorphism. To evaluate the roles of neutral processes in the spatial variation for flower colour in this species, patterns of neutral genetic variation across its distribution range were quantified, and phenotypic differentiation was compared with neutral genetic differentiation. Methods Genetic diversity levels and population genetic structure were investigated through the genotyping of a collection of 1120 individuals in 41 populations ranging from Spain to France, using a set of eight newly developed microsatellite markers. In addition, phenotypic differentiation for flower colour was also quantified by counting colour morph frequency in each population, and measuring the reflectance spectra of sampled individuals. Key Results Populations in Spain present a sharp colour transition from solely purple to solely yellow. The results provide evidence that genetic drift through limited gene flow is important in the evolution of monomorphic populations. In contrast, most populations in France are polymorphic with both phenotypes, and the colour frequencies vary geographically without any spatial gradients observed. A pattern of isolation by distance is detected in France, and gene flow between adjacent populations seems to be an important factor maintaining populations polymorphic. Conclusions Overall, neutral processes contribute to patterns of spatial variation for flower colour in I. lutescens, but it cannot be excluded that natural selection is also operating. An interaction between neutral processes and natural selection is suggested to explain the spatial variation for flower colour in I. lutescens. PMID:27084922

Neutral processes contribute to patterns of spatial variation for flower colour in the Mediterranean Iris lutescens (Iridaceae).

PubMed

Wang, Hui; Talavera, María; Min, Ya; Flaven, Elodie; Imbert, Eric

2016-05-01

Flower colour polymorphism in plants has been used as a classic model for understanding the importance of neutral processes vs. natural selection in population differentiation. However, current explanations for the maintenance of flower colour polymorphism mainly rely on balancing selection, while neutral processes have seldom been championed. Iris lutescens (Iridaceae) is a widespread species in the northern Mediterranean basin, which shows a stable and striking purple-yellow flower colour polymorphism. To evaluate the roles of neutral processes in the spatial variation for flower colour in this species, patterns of neutral genetic variation across its distribution range were quantified, and phenotypic differentiation was compared with neutral genetic differentiation. Genetic diversity levels and population genetic structure were investigated through the genotyping of a collection of 1120 individuals in 41 populations ranging from Spain to France, using a set of eight newly developed microsatellite markers. In addition, phenotypic differentiation for flower colour was also quantified by counting colour morph frequency in each population, and measuring the reflectance spectra of sampled individuals. Populations in Spain present a sharp colour transition from solely purple to solely yellow. The results provide evidence that genetic drift through limited gene flow is important in the evolution of monomorphic populations. In contrast, most populations in France are polymorphic with both phenotypes, and the colour frequencies vary geographically without any spatial gradients observed. A pattern of isolation by distance is detected in France, and gene flow between adjacent populations seems to be an important factor maintaining populations polymorphic. Overall, neutral processes contribute to patterns of spatial variation for flower colour in I. lutescens, but it cannot be excluded that natural selection is also operating. An interaction between neutral processes and natural selection is suggested to explain the spatial variation for flower colour in I. lutescens. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Gain drift compensation with no-feedback-loop developed for the X-IFU/ATHENA readout chain

NASA Astrophysics Data System (ADS)

Prêle, D.; Voisin, F.; Beillimaz, C.; Chen, S.; Goldwurm, A.

2016-07-01

The focal plane of the X-ray Integral Field Unit (X-IFU) instrument of the Athena observatory is composed of about 4000 micro-calorimeters. These sensors, based on superconducting Transition Edge Sensors, are read out through a frequency multiplexer and a base-band feedback to linearize SQUIDs. However, the loop gain of this feedback is lower than 10 in the modulated TES signal bandwidth, which is not enough to fix the gain of the full readout chain. Calibration of the instrument is planned to be done at a time scale larger than a dozen minutes and the challenging energy resolution goal of 2.5 eV at 6 keV will probably require a gain stability larger than 10-4 over a long duration. A large part of this gain is provided by a Low-Noise Amplifier (LNA) in the Warm Front-End Electronics (WFEE). To reach such gain stability over more than a dozen minutes, this non-cooled amplifier has to cope with the temperature and supply voltage variations. Moreover, mainly for noise reasons, common large loop gain with feedback can not be used. We propose a new amplifier topology using diodes as loads of a differential amplifier to provide a fixed voltage gain, independent of the temperature and of the bias fluctuations. This amplifier is designed using a 350 nm SiGe BiCMOS technology and is part of an integrated circuit developed for the WFEE. Our simulations provide the expected gain drift and noise performances of such structure. Comparison with standard resistive loaded differential pair clearly shows the advantages of the proposed amplifier topology with a gain drift decreasing by more than an order of magnitude. Performances of this diode loaded amplifier are discussed in the context of the X-IFU requirements.

Population genetics of the cytoplasm and the units of selection on mitochondrial DNA in Drosophila melanogaster

PubMed Central

2011-01-01

Biological variation exists across a nested set of hierarchical levels from nucleotides within genes to populations within species to lineages within the tree of life. How selection acts across this hierarchy is a long-standing question in evolutionary biology. Recent studies have suggested that genome size is influenced largely by the balance of selection, mutation and drift in lineages with different population sizes. Here we use population cage and maternal transmission experiments to identify the relative strength of selection at an individual and cytoplasmic level. No significant trends were observed in the frequency of large (L) and small (S) mtDNAs across 14 generations in population cages. In all replicate cages, new length variants were observed in heteroplasmic states indicating that spontaneous length mutations occurred in these experimental populations. Heteroplasmic flies carrying L genomes were more frequent than those carrying S genomes suggesting an asymmetric mutation dynamic from larger to smaller mtDNAs. Mother-offspring transmission of heteroplasmy showed that the L mtDNA increased in frequency within flies both between and within generations despite sampling drift of the same intensity as occurred in population cages. These results suggest that selection for mtDNA size is stronger at the cytoplasmic than at the organismal level. The fixation of novel mtDNAs within and between species requires a transient intracellular heteroplasmic stage. The balance of population genetic forces at the cytoplasmic and individual levels governs the units of selection on mtDNA, and has implications for evolutionary inference as well as for the effects of mtDNA mutations on fitness, disease and aging. PMID:21538136

Triggered emissions close to the proton gyrofrequency seen by Cluster

NASA Astrophysics Data System (ADS)

Grison, Benjamin; Pickett, Jolene; Omura, Yoshiharu; Santolik, Ondrej; Decreau, Pierrette; Masson, Arnaud; Engebretson, Mark; Cornilleau-Wehrlin, Nicole; Robert, Patrick; Dandouras, Iannis

Electromagnetic ion cyclotron (EMIC) triggered emissions have been recently observed onboard the Cluster spacecraft close to the plasmapause in the equatorial region of the magnetosphere. These waves appear as "risers": electromagnetic structures that have a positive frequency drift with time, i.e., the EMIC analogue of rising frequency whistler mode triggered emissions and chorus waves. In our first results concerning the emission process based on a single event, these risers have the following properties: they propagate away from the direction of the magnetic equator, they have elliptical left-handed polarization corresponding to the transverse Alfven mode, and frequency drifts of about 30 mHz/s. These risers are not common in the Cluster data set. Nevertheless a few other events were found with similar properties. Another interesting preliminary result is the existence of risers with a polarization opposite that of the EMIC triggered emissions and which correspond to the fast magnetosonic mode.

Amplification of a high-frequency electromagnetic wave by a relativistic plasma

NASA Technical Reports Server (NTRS)

Yoon, Peter H.

1990-01-01

The amplification of a high-frequency transverse electromagnetic wave by a relativistic plasma component, via the synchrotron maser process, is studied. The background plasma that supports the transverse wave is considered to be cold, and the energetic component whose density is much smaller than that of the background component has a loss-cone feature in the perpendicular momentum space and a finite field-aligned drift speed. The ratio of the background plasma frequency squared to the electron gyrofrequency squared is taken to be sufficiently larger than unity. Such a parameter regime is relevant to many space and astrophysical situations. A detailed study of the amplification process is carried out over a wide range of physical parameters including the loss-cone index, the ratio of the electron mass energy to the temperature of the energetic component, the field-aligned drift speed, the normalized density, and the wave propagation angle.

Drift stabilizer for reciprocating free-piston devices

DOEpatents

Ward, William C.; Corey, John A.; Swift, Gregory W.

2003-05-20

A free-piston device has a stabilized piston drift. A piston having a frequency of reciprocation over a stroke length and with first and second sides facing first and second variable volumes, respectively, for containing a working fluid defining an acoustic wavelength at the frequency of reciprocation. A bypass tube waveguide connects the first and second variable volumes at all times during reciprocation of the piston. The waveguide has a relatively low impedance for steady flow and a relatively high impedance for oscillating flow at the frequency of reciprocation of the piston, so that steady flow returns fluid leakage from about the piston between the first and second volumes while oscillating flow is not diverted through the waveguide. Thus, net leakage about the piston is returned during each stroke of the piston while oscillating leakage is not allowed and pressure buildup on either the first or second side of the piston is avoided to provide a stable piston location.

The estimation of selection coefficients in Afrikaners: Huntington disease, porphyria variegata, and lipoid proteinosis.

PubMed Central

Stine, O C; Smith, K D

1990-01-01

The effects of mutation, migration, random drift, and selection on the change in frequency of the alleles associated with Huntington disease, porphyria variegata, and lipoid proteinosis have been assessed in the Afrikaner population of South Africa. Although admixture cannot be completely discounted, it was possible to exclude migration and new mutation as major sources of changes in the frequency of these alleles by limiting analyses to pedigrees descendant from founding families. Calculations which overestimated the possible effect of random drift demonstrated that drift did not account for the observed changes in gene frequencies. Therefore these changes must have been caused by natural selection, and a coefficient of selection was estimated for each trait. For the rare, dominant, deleterious allele associated with Huntington disease, the coefficient of selection was estimated to be .34, indicating that this allele has a selective disadvantage, contrary to some recent studies. For the presumed dominant and probably deleterious allele associated with porphyria variegata, the coefficient of selection lies between .07 and .02. The coefficient of selection for the rare, clinically recessive allele associated with lipoid proteinosis was estimated to be .07. Calculations based on a model system indicate that the observed decrease in allele frequency cannot be explained solely on the basis of selection against the homozygote. Thus, this may be an example of a pleiotropic gene which has a dominant effect in terms of selection even though its known clinical effect is recessive. PMID:2137963

The estimation of selection coefficients in Afrikaners: Huntington disease, porphyria variegata, and lipoid proteinosis.

PubMed

Stine, O C; Smith, K D

1990-03-01

The effects of mutation, migration, random drift, and selection on the change in frequency of the alleles associated with Huntington disease, porphyria variegata, and lipoid proteinosis have been assessed in the Afrikaner population of South Africa. Although admixture cannot be completely discounted, it was possible to exclude migration and new mutation as major sources of changes in the frequency of these alleles by limiting analyses to pedigrees descendant from founding families. Calculations which overestimated the possible effect of random drift demonstrated that drift did not account for the observed changes in gene frequencies. Therefore these changes must have been caused by natural selection, and a coefficient of selection was estimated for each trait. For the rare, dominant, deleterious allele associated with Huntington disease, the coefficient of selection was estimated to be .34, indicating that this allele has a selective disadvantage, contrary to some recent studies. For the presumed dominant and probably deleterious allele associated with porphyria variegata, the coefficient of selection lies between .07 and .02. The coefficient of selection for the rare, clinically recessive allele associated with lipoid proteinosis was estimated to be .07. Calculations based on a model system indicate that the observed decrease in allele frequency cannot be explained solely on the basis of selection against the homozygote. Thus, this may be an example of a pleiotropic gene which has a dominant effect in terms of selection even though its known clinical effect is recessive.

Genetic studies among seven endogamous populations of the Koshi Zone, Bihar (India).

PubMed

Pandey, B N; Das, P K; Husain, S; Anwer, Md Rauf; Jha, A K

2003-09-01

The distribution of AB0 and Rhesus blood groups, PTC taste sensitivity and colour blindness was studied among seven endogamous populations (Tharu, Mushar, Santal, Dhobi, Julaha, Kulhaiya and Karan Kayastha) in the Koshi Zone of Bihar (India). The phenotype and allele frequencies of the four gene loci (AB0, RH, PTC and colour blindness) show considerable differences between these populations. The measurement of genetic distances revealed, that the lowest genetic distance is seen between Dhobi and Julaha, the highest between Mushar and Tharu. From the genetic distance analysis there is some evidence for a close genetic relationship among the population groups belonging to the same region, irrespective of their caste, religion, linguistic or any other affinities. It may be concluded that all these populations have arisen through a common ancestor and changed gene frequencies among them is due to evolutionary forces like mutation, selection, migration, temporal variation and genetic drift. However, these populations retain their separate entities by practising endogamy. Gene diversity analysis reveals that these populations are at an early stage of genetic differentiation.

Logical synchronization: how evidence and hypotheses steer atomic clocks

NASA Astrophysics Data System (ADS)

Myers, John M.; Madjid, F. Hadi

2014-05-01

A clock steps a computer through a cycle of phases. For the propagation of logical symbols from one computer to another, each computer must mesh its phases with arrivals of symbols from other computers. Even the best atomic clocks drift unforeseeably in frequency and phase; feedback steers them toward aiming points that depend on a chosen wave function and on hypotheses about signal propagation. A wave function, always under-determined by evidence, requires a guess. Guessed wave functions are coded into computers that steer atomic clocks in frequency and position—clocks that step computers through their phases of computations, as well as clocks, some on space vehicles, that supply evidence of the propagation of signals. Recognizing the dependence of the phasing of symbol arrivals on guesses about signal propagation elevates `logical synchronization.' from its practice in computer engineering to a dicipline essential to physics. Within this discipline we begin to explore questions invisible under any concept of time that fails to acknowledge the unforeseeable. In particular, variation of spacetime curvature is shown to limit the bit rate of logical communication.

X-ray spectroscopy of warm and hot electron components in the CAPRICE source plasma at EIS testbench at GSI.

PubMed

Mascali, D; Celona, L; Maimone, F; Maeder, J; Castro, G; Romano, F P; Musumarra, A; Altana, C; Caliri, C; Torrisi, G; Neri, L; Gammino, S; Tinschert, K; Spaedtke, K P; Rossbach, J; Lang, R; Ciavola, G

2014-02-01

An experimental campaign aiming to detect X radiation emitted by the plasma of the CAPRICE source - operating at GSI, Darmstadt - has been carried out. Two different detectors (a SDD - Silicon Drift Detector and a HpGe - hyper-pure Germanium detector) have been used to characterize the warm (2-30 keV) and hot (30-500 keV) electrons in the plasma, collecting the emission intensity and the energy spectra for different pumping wave frequencies and then correlating them with the CSD of the extracted beam measured by means of a bending magnet. A plasma emissivity model has been used to extract the plasma density along the cone of sight of the SDD and HpGe detectors, which have been placed beyond specific collimators developed on purpose. Results show that the tuning of the pumping frequency considerably modifies the plasma density especially in the warm electron population domain, which is the component responsible for ionization processes: a strong variation of the plasma density near axis region has been detected. Potential correlations with the charge state distribution in the plasma are explored.

Efficient use of bit planes in the generation of motion stimuli

NASA Technical Reports Server (NTRS)

Mulligan, Jeffrey B.; Stone, Leland S.

1988-01-01

The production of animated motion sequences on computer-controlled display systems presents a technical problem because large images cannot be transferred from disk storage to image memory at conventional frame rates. A technique is described in which a single base image can be used to generate a broad class of motion stimuli without the need for such memory transfers. This technique was applied to the generation of drifting sine-wave gratings (and by extension, sine wave plaids). For each drifting grating, sine and cosine spatial phase components are first reduced to 1 bit/pixel using a digital halftoning technique. The resulting pairs of 1-bit images are then loaded into pairs of bit planes of the display memory. To animate the patterns, the display hardware's color lookup table is modified on a frame-by-frame basis; for each frame the lookup table is set to display a weighted sum of the spatial sine and cosine phase components. Because the contrasts and temporal frequencies of the various components are mutually independent in each frame, the sine and cosine components can be counterphase modulated in temporal quadrature, yielding a single drifting grating. Using additional bit planes, multiple drifting gratings can be combined to form sine-wave plaid patterns. A large number of resultant plaid motions can be produced from a single image file because the temporal frequencies of all the components can be varied independently. For a graphics device having 8 bits/pixel, up to four drifting gratings may be combined, each having independently variable contrast and speed.

Resonance localization and poloidal electric field due to cyclo- tron wave heating in tokamak plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hsu, J.Y.; Chan, V.S.; Harvey, R.W.

1984-08-06

The perpendicular heating in cyclotron waves tends to pile up the resonant particles toward the low magnetic field side with their banana tips localized to the resonant surface. A poloidal electric field with an E x B drift comparable to the ion vertical drift in a toroidal magnetic field may result. With the assumption of anomalous electron and neoclassical ion transport, density variations due to wave heating are discussed.

Impact of data assimilation on Eulerian versus Lagrangian estimates of upper ocean transport

NASA Astrophysics Data System (ADS)

Sperrevik, Ann Kristin; Röhrs, Johannes; Christensen, Kai Hâkon

2017-07-01

Using four-dimensional variational analysis, we produce an estimate of the state of a coastal region in Northern Norway during the late winter and spring in 1984. We use satellite sea surface temperature and in situ observations from a series of intensive field campaigns, and obtain a more realistic distribution of water masses both in the horizontal and the vertical than a pure downscaling approach can achieve. Although the distribution of Eulerian surface current speeds are similar, we find that they are more variable and less dependent on model bathymetry in our reanalysis compared to a hindcast produced using the same modeling system. Lagrangian drift currents on the other hand are significantly changed, with overall higher kinetic energy levels in the reanalysis than in the hindcast, particularly in the superinertial frequency band.

Experimental investigation of mode transitions in asymmetric capacitively coupled radio-frequency Ne and CF4 plasmas

NASA Astrophysics Data System (ADS)

Liu, Gang-Hu; Liu, Yong-Xin; Bai, Li-Shui; Zhao, Kai; Wang, You-Nian

2018-02-01

The dependence of the electron density and the emission intensity on external parameters during the transitions of the electron power absorption mode is experimentally studied in asymmetric electropositive (neon) and electronegative (CF4) capacitively coupled radio-frequency plasmas. The spatio-temporal distribution of the emission intensity is measured with phase resolved optical emission spectroscopy and the electron density at the discharge center is measured by utilizing a floating hairpin probe. In neon discharge, the emission intensity increases almost linearly with the rf voltage at all driving frequencies covered here, while the variation of the electron density with the rf voltage behaves differently at different driving frequencies. In particular, the electron density increases linearly with the rf voltage at high driving frequencies, while at low driving frequencies the electron density increases slowly at the low-voltage side and, however, grows rapidly, when the rf voltage is higher than a certain value, indicating a transition from α to γ mode. The rf voltage, at which the mode transition occurs, increases with the decrease of the driving frequency/the working pressure. By contrast, in CF4 discharge, three different electron power absorption modes can be observed and the electron density and emission intensity do not exhibit a simple dependence on the rf voltage. In particular, the electron density exhibits a minimum at a certain rf voltage when the electron power absorption mode is switching from drift-ambipolar to the α/γ mode. A minimum can also be found in the emission intensity at a higher rf voltage when a discharge is switching into the γ mode.

Fishing for drifts: detecting buoyancy changes of a top marine predator using a step-wise filtering method

PubMed Central

Gordine, Samantha Alex; Fedak, Michael; Boehme, Lars

2015-01-01

ABSTRACT In southern elephant seals (Mirounga leonina), fasting- and foraging-related fluctuations in body composition are reflected by buoyancy changes. Such buoyancy changes can be monitored by measuring changes in the rate at which a seal drifts passively through the water column, i.e. when all active swimming motion ceases. Here, we present an improved knowledge-based method for detecting buoyancy changes from compressed and abstracted dive profiles received through telemetry. By step-wise filtering of the dive data, the developed algorithm identifies fragments of dives that correspond to times when animals drift. In the dive records of 11 southern elephant seals from South Georgia, this filtering method identified 0.8–2.2% of all dives as drift dives, indicating large individual variation in drift diving behaviour. The obtained drift rate time series exhibit that, at the beginning of each migration, all individuals were strongly negatively buoyant. Over the following 75–150 days, the buoyancy of all individuals peaked close to or at neutral buoyancy, indicative of a seal's foraging success. Independent verification with visually inspected detailed high-resolution dive data confirmed that this method is capable of reliably detecting buoyancy changes in the dive records of drift diving species using abstracted data. This also affirms that abstracted dive profiles convey the geometric shape of drift dives in sufficient detail for them to be identified. Further, it suggests that, using this step-wise filtering method, buoyancy changes could be detected even in old datasets with compressed dive information, for which conventional drift dive classification previously failed. PMID:26486362

Frequency modulation indicator, Arnold’s web and diffusion in the Stark Quadratic-Zeeman problem

NASA Astrophysics Data System (ADS)

Cordani, Bruno

2008-11-01

We notice that the fundamental frequencies of a slightly perturbed integrable Hamiltonian system are not time-constant inside a resonance but frequency modulated, as is evident from pendulum models and wavelet analysis. Exploiting an intrinsic imprecision inherent to the numerical frequency analysis algorithm itself, hence transforming a drawback into an opportunity, we define the Frequency Modulation Indicator, a very sensitive tool in detecting where fundamental frequencies are modulated, localizing so the resonances without having to resort, as in other methods, to the integration of variational equations. For the Kepler problem, the space of the orbits with a fixed energy has the topology of the product of two 2-spheres. The perturbation Hamiltonian, averaged over the mean anomaly, has surely a maximum and a minimum, to which correspond two periodic orbits in physical space. Studying the neighbourhood of these two elliptic stable points, we are able to define adapted action-angle variables, for example, the usual but “SO(4)-rotated” Delaunay variables. The procedure, implemented in the program KEPLER, is performed transparently for the user, providing a general scheme suited for generic perturbation. The method is then applied to the Stark-Quadratic-Zeeman problem, displaying very clearly the Arnold web of the resonances. Sectioning transversely one of the resonance strips so highlighted and performing a numerical frequency analysis, one is able to locate with great precision the thin stochastic layer surrounding a separatrix. Another very long (10 8 revolutions) frequency analysis on an orbit starting here reveals, as expected, a well defined pattern, which ensures that the integration errors do not eject the point out of the layer, and moreover a very slow drift in the frequency values, clearly due to Arnold diffusion.

On the inward drift of runaway electrons during the plateau phase of runaway current

DOE PAGES

Hu, Di; Qin, Hong

2016-03-29

The well observed inward drift of current carrying runaway electrons during runaway plateau phase after disruption is studied by considering the phase space dynamic of runaways in a large aspect ratio toroidal system. We consider the case where the toroidal field is unperturbed and the toroidal symmetry of the system is preserved. The balance between the change in canonical angular momentum and the input of mechanical angular momentum in such a system requires runaways to drift horizontally in configuration space for any given change in momentum space. The dynamic of this drift can be obtained by integrating the modified Euler-Lagrangemore » equation over one bounce time. It is then found that runaway electrons will always drift inward as long as they are decelerating. This drift motion is essentially non-linear, since the current is carried by runaways themselves, and any runaway drift relative to the magnetic axis will cause further displacement of the axis itself. A simplified analytical model is constructed to describe such inward drift both in the ideal wall case and no wall case, and the runaway current center displacement as a function of parallel momentum variation is obtained. The time scale of such displacement is estimated by considering effective radiation drag, which shows reasonable agreement with the observed displacement time scale. Furthermore, this indicates that the phase space dynamic studied here plays a major role in the horizontal displacement of runaway electrons during plateau phase. (C) 2016 AIP Publishing LLC.« less

On the inward drift of runaway electrons during the plateau phase of runaway current

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hu, Di, E-mail: hudi-2@pku.edu.cn; Qin, Hong; School of Nuclear Science and Technology and Department of Modern Physics, University of Science and Technology of China, Hefei 230026

The well observed inward drift of current carrying runaway electrons during runaway plateau phase after disruption is studied by considering the phase space dynamic of runaways in a large aspect ratio toroidal system. We consider the case where the toroidal field is unperturbed and the toroidal symmetry of the system is preserved. The balance between the change in canonical angular momentum and the input of mechanical angular momentum in such a system requires runaways to drift horizontally in configuration space for any given change in momentum space. The dynamic of this drift can be obtained by integrating the modified Euler-Lagrangemore » equation over one bounce time. It is then found that runaway electrons will always drift inward as long as they are decelerating. This drift motion is essentially non-linear, since the current is carried by runaways themselves, and any runaway drift relative to the magnetic axis will cause further displacement of the axis itself. A simplified analytical model is constructed to describe such inward drift both in the ideal wall case and no wall case, and the runaway current center displacement as a function of parallel momentum variation is obtained. The time scale of such displacement is estimated by considering effective radiation drag, which shows reasonable agreement with the observed displacement time scale. This indicates that the phase space dynamic studied here plays a major role in the horizontal displacement of runaway electrons during plateau phase.« less

On the inward drift of runaway electrons during the plateau phase of runaway current

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hu, Di; Qin, Hong

The well observed inward drift of current carrying runaway electrons during runaway plateau phase after disruption is studied by considering the phase space dynamic of runaways in a large aspect ratio toroidal system. We consider the case where the toroidal field is unperturbed and the toroidal symmetry of the system is preserved. The balance between the change in canonical angular momentum and the input of mechanical angular momentum in such a system requires runaways to drift horizontally in configuration space for any given change in momentum space. The dynamic of this drift can be obtained by integrating the modified Euler-Lagrangemore » equation over one bounce time. It is then found that runaway electrons will always drift inward as long as they are decelerating. This drift motion is essentially non-linear, since the current is carried by runaways themselves, and any runaway drift relative to the magnetic axis will cause further displacement of the axis itself. A simplified analytical model is constructed to describe such inward drift both in the ideal wall case and no wall case, and the runaway current center displacement as a function of parallel momentum variation is obtained. The time scale of such displacement is estimated by considering effective radiation drag, which shows reasonable agreement with the observed displacement time scale. Furthermore, this indicates that the phase space dynamic studied here plays a major role in the horizontal displacement of runaway electrons during plateau phase. (C) 2016 AIP Publishing LLC.« less

Solar Electron Beams Detected in Hard X-Rays and Radio Waves

NASA Astrophysics Data System (ADS)

Aschwanden, Markus J.; Benz, Arnold O.; Dennis, Brian R.; Schwartz, Richard A.

1995-12-01

We present a statistical survey of electron beam signatures that are detected simultaneously at hard X-ray (HXR) and radio wavelengths during solar flares. For the identification of a simultaneous event we require a type III (normal-drifting or reverse-slope-drifting) radio burst that coincides (within ± 1 s) with a significant (≥ 3 σ HXR pulse of similar duration (≥ 1 s). Our survey covers all HXRBS/SMM and BATSE/CGRO flares that were simultaneously observed with the 0.1-1 GHz spectrometer Ikarus or the 0.1-3 GHz spectrometer Phoenix of ETH Zurich during 1980-1993. The major results and conclusions are as follows: 1. We identified 233 HXR pulses (out of 882) to be correlated with type III-like radio bursts: 77% with normal-drifting type III bursts, 34% with reverse-slope (RS)-drifting bursts, and 13% with oppositely drifting (III + RS) burst pairs. The majority of these cases provide evidence for acceleration of bidirectional electron beams. 2. The detailed correlation with type III-like radio bursts suggests that most of the subsecond fluctuations detectable in ≥ 25 keV HXR emission are related to discrete electron injections. This is also supported by the proportionality of the HXR pulse duration with the radio burst duration. The distribution of HXR pulse durations WX is found to have an exponential distribution, i.e., N(WX) ∝ exp (-WX/0.25 s) in the measured range of WX ≍ 0.5-1.5 s. 3. From oppositely drifting radio burst pairs we infer electron densities of ne = 109-1010 cm-3 at the acceleration site. From the absence of a frequency gap between the simultaneous start frequencies of upward and downward drifting radio bursts, we infer an upper limit of L ≤ 2000 km for the extent of the acceleration site and an acceleration time of Δt ≤ 3 ms for the (≥ 5 keV) radio-emitting electrons (in the case of parallel electric fields). 4. The relative timing between HXR pulses and radio bursts is best at the start frequency (of earliest radio detection), with a coincidence of ≲0.1 s in the statistical average, while the radio bursts are delayed at all other frequencies (in the statistical average). The timing is consistent with the scenario of electron injection at a mean coronal height of h ≍ 104 km. The radio-emitting electrons are found to have lower energies (≳ 5 keV) than the ≥ 25 keV HXR-emitting electrons. 5. The modulated HXR flux that correlates with electron beam signatures in radio amounts to 2%-6% of the total HXR count rate (for BATSE flares). The associated kinetic energy in electrons is estimated to be E = 4 × 1022-1027 ergs per beam, or Ne = 4 × 1028-1033 electrons per beam, considering the spread from the smallest to the largest flare detected by HXRBS. 6. The average drift rate of propagating electron beams is found here to be [dv/dt] = 0.10ν1.4 MHz km s-1 in the frequency range of ν = 200-3000 MHz, which is lower than expected from the Alvarez & Haddock relation for frequencies ≤ 550 MHz. 7. The frequency distributions of HXR fluxes (Fx) and radio type III burst fluxes (FR), which both can be characterized by a power law, are found to have a significantly different slope, i.e., N(Fx) ∝ Fx-1.87 versus N(FR) ∝ FR-1.28. The difference in the slope is attributed to the fundamental difference between incoherent and coherent emission processes. In summary, these findings suggest a flare scenario in which bidirectional streams of electrons are accelerated during solar flares at heights of 10 km above the photosphere in rather compact regions (L ≲ 2000 km). The acceleration site is likely to be located near the top of flare loops (defined by HXR double footpoints) or in the cusp above, where electrons have also access to open field lines or larger arches. The observed bidirectionality of electron beams favors acceleration mechanisms with oppositely directed electric fields or stochastic acceleration in an X-type reconnection geometry.

Galactic CR in the Heliosphere according to NM data, 3. Results for even solar cycles 20 and 22.

NASA Astrophysics Data System (ADS)

Dorman, L.; Dorman, I.; Iucci, N.; Parisi, M.; Villoresi, G.; Zukerman, I.

We found that the maximum of correlation coefficient between cosmic ray (CR) intensity and solar activity (SA) variations is occurred for even cycles 20 and 22 for about two-three times in the shorter time than for odd cycles 19 and 21. We came to conclusion that this difference is caused by CR drift effects: during even cycle drifts produced the small increasing of CR global modulation (additional to the caused by convection-diffusion mechanism) in the period from minimum to maximum of SA, and after the maximum of SA up to the minimum- about the same decreasing of CR modulation. This gives sufficient decreasing of observed time lag between CR and- SA in even solar cycles. We analyzed monthly and 11 months smoothed data of (CR) intensity observed by neutron monitors with different cut-off rigidities for even solar cycles 20 and 22. We use a special model described the connection between solar activity (characterized by monthly sunspot numbers) and CR convection- diff usion global modulation with taking into account time-lag of processes in the Heliosphere relative to the active processes on the Sun. For taking into account drifts we use models described in literature. In the first we correct observed long-term CR modulation on drifts with different amplitudes from 0 (no drifts), then 0.15%, 0.25%,... up to 4%. For each expected amplitude of drifts we determine the correlation coefficient between expected CR variations and observed by neutron monitors with different cut - off rigidities for different times of solar wind transportation from the Sun to the boundary of the modulation region from 1 to 60 average months (it corresponds approximately to dimension of modulation region from about 6 to 360 AU). We compare observed res ults for even solar cycles 20 and 22.

Analytic non-Maxwellian electron velocity distribution function in a Hall discharge plasma

NASA Astrophysics Data System (ADS)

Shagayda, Andrey; Tarasov, Alexey

2017-10-01

The electron velocity distribution function in the low-pressure discharges with the crossed electric and magnetic fields, which occur in magnetrons, plasma accelerators, and Hall thrusters with a closed electron drift, is not Maxwellian. A deviation from equilibrium is caused by a large electron mean free path relative to the Larmor radius and the size of the discharge channel. In this study, we derived in the relaxation approximation the analytical expression of the electron velocity distribution function in a weakly ionized Lorentz plasma with the crossed electric and magnetic fields in the presence of the electron density and temperature gradients in the direction of the electric field. The solution was obtained in the stationary approximation far from boundary surfaces, when diffusion and mobility are determined by the classical effective collision frequency of electrons with ions and atoms. The moments of the distribution function including the average velocity, the stress tensor, and the heat flux were calculated and compared with the classical hydrodynamic expressions. It was shown that a kinetic correction to the drift velocity stems from a contribution of the off-diagonal component of the stress tensor. This correction becomes essential if the drift velocity in the crossed electric and magnetic fields would be comparable to the thermal velocity of electrons. The electron temperature has three different components at a nonzero effective collision frequency and two different components in the limit when the collision frequency tends to zero. It is shown that, in the presence of ionization collisions, the components of the heat flux have additives that are not related to the temperature gradient, and arise because of the electron drift.

The interaction of ultra-low-frequency pc3-5 waves with charged particles in Earth's magnetosphere

NASA Astrophysics Data System (ADS)

Zong, Qiugang; Rankin, Robert; Zhou, Xuzhi

2017-12-01

One of the most important issues in space physics is to identify the dominant processes that transfer energy from the solar wind to energetic particle populations in Earth's inner magnetosphere. Ultra-low-frequency (ULF) waves are an important consideration as they propagate electromagnetic energy over vast distances with little dissipation and interact with charged particles via drift resonance and drift-bounce resonance. ULF waves also take part in magnetosphere-ionosphere coupling and thus play an essential role in regulating energy flow throughout the entire system. This review summarizes recent advances in the characterization of ULF Pc3-5 waves in different regions of the magnetosphere, including ion and electron acceleration associated with these waves.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adamson, B. D.; Coughlan, N. J. A.; Markworth, P. B.

An ion mobility mass spectrometry apparatus for investigating the photoisomerization and photodissociation of electrosprayed molecular ions in the gas phase is described. The device consists of a drift tube mobility spectrometer, with access for a laser beam that intercepts the drifting ion packet either coaxially or transversely, followed by a quadrupole mass filter. An ion gate halfway along the drift region allows the instrument to be used as a tandem ion mobility spectrometer, enabling mobility selection of ions prior to irradiation, with the photoisomer ions being separated over the second half of the drift tube. The utility of the devicemore » is illustrated with photoisomerization and photodissociation action spectra of carbocyanine molecular cations. The mobility resolution of the device for singly charged ions is typically 80 and it has a mass range of 100-440 Da, with the lower limit determined by the drive frequency for the ion funnels, and the upper limit by the quadrupole mass filter.« less

Diversity of soils near rover deploy region

NASA Technical Reports Server (NTRS)

1997-01-01

The surface near the rover's egress from the lander contains bright red drift (#1), dark gray rocks such as Cradle (#3), soil intermediate in color to the rocks and drift (#2), and dark red soil on and around the rock Lamb (#4). Globally, Mars is characterized by similar color variations. The spectra of these sites have been ratioed to the drift to highlight their differences. The rocks are less red and have less of a bend in the spectrum at visible wavelengths, indicating less ferric minerals and a more unweathered composition than drift. The intermediate colored soils appear intermediate in the spectral properties as well. The dark red soil at Lamb is darker than drift by about equally as red; the curvature of spectrum at visible wavelengths indicates either more ferric minerals or a larger particle size.

Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech).

The effect of pollen versus seed flow on the maintenance of nuclear-cytoplasmic gynodioecy.

PubMed

Dufay, Mathilde; Pannell, John R

2010-03-01

Gynodioecy, where females co-occur with hermaphrodites, is a relatively common sexual system in plants that is often the result of a genetic conflict between maternally inherited male sterility genes in the mitochondrial genome and the biparentally inherited male fertility restorer genes in the nucleus. Previous models have shown that nuclear-cytoplasmic gynodioecy can be maintained under certain conditions by negative frequency-dependent selection, but the effect of other evolutionary processes such as genetic drift and population subdivision is only partially understood. Here, we investigate the joint effects of frequency-dependent selection, drift, and migration through either pollen or seeds on the maintenance of nuclear-cytoplasmic gynodioecy in a subdivided population. We find that the combination of drift and selection causes the loss of gynodioecy under scenarios that would maintain it under the influence of selection alone, and that both seed and, more surprisingly, pollen flow can maintain the polymorphism. In particular, although pollen flow could not avoid the loss of cytoplasmic polymorphism within demes, it allowed the maintenance of nuclear-cytoplasmic polymorphism at the metapopulation level.

Diffuse Interplanetary Radio Emission (DIRE) Accompanying Type II Radio Bursts

NASA Astrophysics Data System (ADS)

Teklu, T. B.; Gopalswamy, N.; Makela, P. A.; Yashiro, S.; Akiyama, S.; Xie, H.

2015-12-01

We report on an unusual drifting feature in the radio dynamic spectra at frequencies below 14 MHz observed by the Radio and Plasma Wave (WAVES) experiment on board the Wind spacecraft. We call this feature as "Diffuse Interplanetary Radio Emission (DIRE)". The DIRE events are generally associated with intense interplanetary type II radio bursts produced by shocks driven by coronal mass ejections (CMEs). DIREs drift like type II bursts in the dynamic spectra, but the drifting feature consist of a series of short-duration spikes (similar to a type I chain). DIREs occur at higher frequencies than the associated type II bursts, with no harmonic relationship with the type II burst. The onset of DIREs is delayed by several hours from the onset of the eruption. Comparing the radio dynamic spectra with white-light observations from the Solar and Heliospheric Observatory (SOHO) mission, we find that the CMEs are generally very energetic (fast and mostly halos). We suggest that the DIRE source is typically located at the flanks of the CME-driven shock that is still at lower heliocentric distances.

Geomagnetic imprinting predicts spatio-temporal variation in homing migration of pink and sockeye salmon

PubMed Central

Putman, Nathan F.; Jenkins, Erica S.; Michielsens, Catherine G. J.; Noakes, David L. G.

2014-01-01

Animals navigate using a variety of sensory cues, but how each is weighted during different phases of movement (e.g. dispersal, foraging, homing) is controversial. Here, we examine the geomagnetic and olfactory imprinting hypotheses of natal homing with datasets that recorded variation in the migratory routes of sockeye (Oncorhynchus nerka) and pink (Oncorhynchus gorbuscha) salmon returning from the Pacific Ocean to the Fraser River, British Columbia. Drift of the magnetic field (i.e. geomagnetic imprinting) uniquely accounted for 23.2% and 44.0% of the variation in migration routes for sockeye and pink salmon, respectively. Ocean circulation (i.e. olfactory imprinting) predicted 6.1% and 0.1% of the variation in sockeye and pink migration routes, respectively. Sea surface temperature (a variable influencing salmon distribution but not navigation, directly) accounted for 13.0% of the variation in sockeye migration but was unrelated to pink migration. These findings suggest that geomagnetic navigation plays an important role in long-distance homing in salmon and that consideration of navigation mechanisms can aid in the management of migratory fishes by better predicting movement patterns. Finally, given the diversity of animals that use the Earth's magnetic field for navigation, geomagnetic drift may provide a unifying explanation for spatio-temporal variation in the movement patterns of many species. PMID:25056214

Multivariate detrending of fMRI signal drifts for real-time multiclass pattern classification.

PubMed

Lee, Dongha; Jang, Changwon; Park, Hae-Jeong

2015-03-01

Signal drift in functional magnetic resonance imaging (fMRI) is an unavoidable artifact that limits classification performance in multi-voxel pattern analysis of fMRI. As conventional methods to reduce signal drift, global demeaning or proportional scaling disregards regional variations of drift, whereas voxel-wise univariate detrending is too sensitive to noisy fluctuations. To overcome these drawbacks, we propose a multivariate real-time detrending method for multiclass classification that involves spatial demeaning at each scan and the recursive detrending of drifts in the classifier outputs driven by a multiclass linear support vector machine. Experiments using binary and multiclass data showed that the linear trend estimation of the classifier output drift for each class (a weighted sum of drifts in the class-specific voxels) was more robust against voxel-wise artifacts that lead to inconsistent spatial patterns and the effect of online processing than voxel-wise detrending. The classification performance of the proposed method was significantly better, especially for multiclass data, than that of voxel-wise linear detrending, global demeaning, and classifier output detrending without demeaning. We concluded that the multivariate approach using classifier output detrending of fMRI signals with spatial demeaning preserves spatial patterns, is less sensitive than conventional methods to sample size, and increases classification performance, which is a useful feature for real-time fMRI classification. Copyright © 2014 Elsevier Inc. All rights reserved.

Strong genetic structure revealed by multilocus patterns of variation in Giardia duodenalis isolates of patients from Galicia (NW-Iberian Peninsula).

PubMed

Gabín-García, Luis B; Bartolomé, Carolina; Abal-Fabeiro, José L; Méndez, Santiago; Llovo, José; Maside, Xulio

2017-03-01

We report a survey of genetic variation at three coding loci in Giardia duodenalis of assemblages A and B obtained from stool samples of patients from Santiago de Compostela (Galicia, NW-Iberian Peninsula). The mean pooled synonymous diversity for assemblage A was nearly five times lower than for assemblage B (0.77%±0.30% and 4.14%±1.65%, respectively). Synonymous variation in both assemblages was in mutation-drift equilibrium and an excess of low-frequency nonsynonymous variants suggested the action of purifying selection at the three loci. Differences between isolates contributed to 40% and 60% of total genetic variance in assemblages A and B, respectively, which revealed a significant genetic structure. These results, together with the lack of evidence for recombination, support that (i) Giardia assemblages A and B are in demographic equilibrium and behave as two genetically isolated populations, (ii) infections are initiated by a reduced number of individuals, which may be genetically diverse and even belong to different assemblages, and (iii) parasites reproduce clonally within the host. However, the observation of invariant loci in some isolates means that mechanisms for the homogenization of the genetic content of the two diploid nuclei in each individual must exist. Copyright © 2016 Elsevier B.V. All rights reserved.

Anomalous phosphine sensitivity coefficients as probes for a possible variation of the proton-to-electron mass ratio

NASA Astrophysics Data System (ADS)

Owens, A.; Yurchenko, S. N.; Špirko, V.

2018-02-01

A robust variational approach is used to investigate the sensitivity of the rotation-vibration spectrum of phosphine (PH3) to a possible cosmological variation of the proton-to-electron mass ratio, μ. Whilst the majority of computed sensitivity coefficients, T, involving the low-lying vibrational states acquire the expected values of T ≈ -1 and T ≈ -1/2 for rotational and ro-vibrational transitions, respectively, anomalous sensitivities are uncovered for the A1 - A2 splittings in the ν2/ν4, ν1/ν3 and 2ν _4^{ℓ=0}/2ν _4^{ℓ=2} manifolds of PH3. A pronounced Coriolis interaction between these states in conjunction with accidentally degenerate A1 and A2 energy levels produces a series of enhanced sensitivity coefficients. Phosphine is expected to occur in a number of different astrophysical environments and has potential for investigating a drifting constant. Furthermore, the displayed behaviour hints at a wider trend in molecules of C_{3v}(M) symmetry, thus demonstrating that the splittings induced by higher-order ro-vibrational interactions are well suited for probing μ in other symmetric top molecules in space, since these low-frequency transitions can be straightforwardly detected by radio telescopes.

L-Band Brightness Temperature Variations at Dome C and Snow Metamorphism at the Surface

NASA Technical Reports Server (NTRS)

Brucker, Ludovic; Dinnat, Emmanuel; Picard, Ghislain; Champollion, Nicolas

2014-01-01

The Antarctic Plateau is a promising site to monitor microwave radiometers' drift, and to inter-calibrate microwave radiometers, especially 1.4 GigaHertz (L-band) radiometers on board the Soil Moisture and Ocean Salinity (SMOS), and AquariusSAC-D missions. The Plateau is a thick ice cover, thermally stable in depth, with large dimensions, and relatively low heterogeneities. In addition, its high latitude location in the Southern Hemisphere enables frequent observations by polar-orbiting satellites, and no contaminations by radio frequency interference. At Dome C (75S, 123E), on the Antarctic Plateau, the substantial amount of in-situ snow measurements available allows us to interpret variations in space-borne microwave brightness temperature (TB) (e.g. Macelloni et al., 2007, 2013, Brucker et al., 2011, Champollion et al., 2013). However, to analyze the observations from the Aquarius radiometers, whose sensitivity is 0.15 K, the stability of the snow layers near the surface that are most susceptible to rapidly change needs to be precisely assessed. This study focuses on the spatial and temporal variations of the Aquarius TB over the Antarctic Plateau, and at Dome C in particular, to highlight the impact of snow surface metamorphism on the TB observations at L-band.

Aquarius Brightness Temperature Variations at Dome C and Snow Metamorphism at the Surface. [29

NASA Technical Reports Server (NTRS)

Brucker, Ludovic; Dinnat, Emmanuel Phillippe; Picard, Ghislain; Champollion, Nicolas

2014-01-01

The Antarctic Plateau is a promising site to monitor microwave radiometers' drift, and to inter-calibrate microwave radiometers, especially 1.4 GHz (L-band) radiometers on board the Soil Moisture and Ocean Salinity (SMOS), and AquariusSAC-D missions. The Plateau is a thick ice cover, thermally stable in depth, with large dimensions, and relatively low heterogeneities. In addition, its high latitude location in the Southern Hemisphere enables frequent observations by polar-orbiting satellites, and no contaminations by radio frequency interference. At Dome C (75S, 123E), on the Antarctic Plateau, the substantial amount of in-situ snow measurements available allows us to interpret variations in space-borne microwave brightness temperature (TB) (e.g. Macelloni et al., 2007, 2013, Brucker et al., 2011, Champollion et al., 2013). However, to analyze the observations from the Aquarius radiometers, whose sensitivity is 0.15 K, the stability of the snow layers near the surface that are most susceptible to rapidly change needs to be precisely assessed. This study focuses on the spatial and temporal variations of the Aquarius TB over the Antarctic Plateau, and at Dome C in particular, to highlight the impact of snow surface metamorphism on the TB observations at L-band.

Noise Reduction of 1sec Geomagnetic Observatory Data without Information Loss

NASA Astrophysics Data System (ADS)

Brunke, Heinz-Peter; Korte, Monika; Rudolf, Widmer-Schnidrig

2017-04-01

Traditional fluxgate magnetometers used at geomagnetic observatories are optimized towards long-term stability. Typically, such instruments can only resolve background geomagnetic field variations up to a frequency of approximately 0.04 Hz and are limited by instrumental self-noise above this frequency. However, recently the demand for low noise 1 Hz observatory data has increased. IAGA has defined a standard for definitive 1sec data. Induction coils have low noise at these high frequencies, but lack long-term stability. We present a method to numerically combine the data from a three axis induction coil system with a typical low-drift observatory fluxgate magnetometer. The resulting data set has a reduced noise level above 0.04 Hz while maintaining the long term stability of the fluxgate magnetometer. Numerically we fit a spline to the fluxgate data. But in contrast to such a low pass filtering process, our method reduces the noise level at high frequencies without any loss of information. In order to experimentally confirm our result, we compared it to a very low noise scalar magnetometer: an optically pumped potassium magnetometer. In the frequency band from [0.03Hz to 0.5Hz] we found an rms-noise reduction from 80pT for the unprocessed fluxgate data to about 25pT for the processed data. We show how our method improves geomagnetic 1 sec observatory data for, e.g., the study of magnetospheric pulsations and EMIC waves.

Unusual behavior of quiet-time zonal and vertical plasma drift velocities over Jicamarca during the recent extended solar minimum of 2008

NASA Astrophysics Data System (ADS)

Santos, Ângela M.; Abdu, Mangalathayil A.; Souza, Jonas R.; Batista, Inez S.; Sobral, José H. A.

2017-11-01

The influence of the recent deep and prolonged solar minimum on the daytime zonal and vertical plasma drift velocities during quiet time is investigated in this work. Analyzing the data obtained from incoherent scatter radar from Jicamarca (11.95° S, 76.87° W) we observe an anomalous behavior of the zonal plasma drift during June 2008 characterized by lower than usual daytime westward drift and its early afternoon reversal to eastward. As a case study the zonal drift observed on 24 June 2008 is modeled using a realistic low-latitude ionosphere simulated by the Sheffield University Plasmasphere-Ionosphere Model-INPE (SUPIM-INPE). The results show that an anomalously low zonal wind was mainly responsible for the observed anomalous behavior in the zonal drift. A comparative study of the vertical plasma drifts obtained from magnetometer data for some periods of maximum (2000-2002) and minimum solar activity (1998, 2008, 2010) phases reveal a considerable decrease on the E-region conductivity and the dynamo electric field during 2008. However, we believe that the contribution of these characteristics to the unusual behavior of the zonal plasma drift is significantly smaller than that arising from the anomalously low zonal wind. The SUPIM-INPE result of the critical frequency of the F layer (foF2) over Jicamarca suggested a lower radiation flux than that predicted by solar irradiance model (SOLAR2000) for June 2008.

[Comparative study of unidirectional transducers for invasive blood pressure monitoring].

PubMed

Matzek, F; Boenick, U; Frucht, U; Schroeder, P M

1989-03-01

This paper reports on the results of a study in which the offset drift, sensitivity error and drift, as well as the linearity error of six DPT's were investigated under normal ambient conditions and varying conditions of temperature, light, operating time and variation of supply voltage. In addition, the dynamic response, and the influence of storage at extreme temperatures, and resterilisation, was examined. The electrical and mechanical safety/reliability of DPT's was also investigated. The results obtained are compared.

Controlling qubit drift by recycling error correction syndromes

NASA Astrophysics Data System (ADS)

Blume-Kohout, Robin

2015-03-01

Physical qubits are susceptible to systematic drift, above and beyond the stochastic Markovian noise that motivates quantum error correction. This parameter drift must be compensated - if it is ignored, error rates will rise to intolerable levels - but compensation requires knowing the parameters' current value, which appears to require halting experimental work to recalibrate (e.g. via quantum tomography). Fortunately, this is untrue. I show how to perform on-the-fly recalibration on the physical qubits in an error correcting code, using only information from the error correction syndromes. The algorithm for detecting and compensating drift is very simple - yet, remarkably, when used to compensate Brownian drift in the qubit Hamiltonian, it achieves a stabilized error rate very close to the theoretical lower bound. Against 1/f noise, it is less effective only because 1/f noise is (like white noise) dominated by high-frequency fluctuations that are uncompensatable. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE

A Differential Resonant Accelerometer with Low Cross-Interference and Temperature Drift

PubMed Central

Li, Bo; Zhao, Yulong; Li, Cun; Cheng, Rongjun; Sun, Dengqiang; Wang, Songli

2017-01-01

Presented in this paper is a high-performance resonant accelerometer with low cross-interference, low temperature drift and digital output. The sensor consists of two quartz double-ended tuning forks (DETFs) and a silicon substrate. A new differential silicon substrate is proposed to reduce the temperature drift and cross-interference from the undesirable direction significantly. The natural frequency of the quartz DETF is theoretically calculated, and then the axial stress on the vibration beams is verified through finite element method (FEM) under a 100 g acceleration which is loaded on x-axis, y-axis and z-axis, respectively. Moreover, sensor chip is wire-bonded to a printed circuit board (PCB) which contains two identical oscillating circuits. In addition, a steel shell is selected to package the sensor for experiments. Benefiting from the distinctive configuration of the differential structure, the accelerometer characteristics such as temperature drift and cross-interface are improved. The experimental results demonstrate that the cross-interference is lower than 0.03% and the temperature drift is about 18.16 ppm/°C. PMID:28106798

Radial plasma drifts deduced from VLF whistler mode signals - A modelling study

NASA Astrophysics Data System (ADS)

Poulter, E. M.; Andrews, M. K.; Bailey, G. J.; Moffett, R. J.

1984-05-01

VLF whistler mode signals have previously been used to infer radial plasma drifts in the equatorial plane of the plasmasphere and the field-aligned ionosphere-protonosphere coupling fluxes. Physical models of the plasmasphere consisting of O(+) adn H(+) ions along dipole magnetic field lines, and including radial E x B drifts, are applied to a mid-latitude flux tube appropriate to whistler mode signals received at Wellington, New Zealand, from the fixed frequency VLF transmitter NLK (18.6 kHz) in Seattle, U.S.A. These models are first shown to provide a good representation of the recorded Doppler shift and group delay data. They are then used to simulate the process of deducing the drifts and fluxes from the recorded data. Provided the initial whistler mode duct latitude and the ionospheric contributions are known, the drifts at the equatorial plane can be estimated to about + or - 20 m/s (approximately 10-15 percent), and the two hemisphere ionosphere-protonosphere coupling fluxes to about + or - 10 to the 12th/sq m-sec (approximately 40 percent).

Patterns of Larval Sucker Emigration from the Sprague and Lower Williamson Rivers of the Upper Klamath Basin, Oregon, Prior to the Removal of Chiloquin Dam - 2006 Annual Report

USGS Publications Warehouse

Ellsworth, Craig M.; Tyler, Torrey J.; VanderKooi, Scott P.; Markle, Douglas F.

2009-01-01

In 2006, we collected larval Lost River sucker Deltistes luxatus (LRS), shortnose sucker Chasmistes brevirostris (SNS), and Klamath largescale sucker Catostomus snyderi (KLS) emigrating from spawning areas in the Williamson and Sprague Rivers. This work is part of a multi-year effort to characterize the relative abundance, drift timing, and length frequencies of larval suckers in this watershed prior to the removal of Chiloquin Dam on the lower Sprague River. Additional larval drift samples were collected from the Fremont Bridge on Lakeshore Drive on the south end of Upper Klamath Lake near its outlet to the Link River. Because of difficulties in distinguishing KLS larvae from SNS larvae, individuals identified as either of these two species were grouped together and reported as KLS-SNS in this report. We found that larval densities varied by site with the highest densities being collected at the most upstream site on the Sprague River at river kilometer (rkm) 108.0 near Beatty, Oregon (Beatty), and the most downstream sites near Chiloquin, Oregon; one site on the Sprague River at rkm 0.7 (Chiloquin) and the other site on the Williamson River at rkm 7.4 (Williamson). Larval catches were relatively small and sporadic at two other sites on the Sprague River located between Chiloquin and Beatty (Power Station at rkm 9.5 and Lone Pine at rkm 52.7) and one site on the Sycan River at rkm 4.7. Most larvae (79 percent) collected in 2006 were identified as LRS. More larvae and eggs were collected at Chiloquin than at any other site. The seasonal timing of larval drift varied by location; larvae generally were captured earlier at upstream sites than at downstream sites. Cumulative catch percentages of drifting larvae suggest that larval LRS emigrated earlier than KLS-SNS larvae at every site. Drift of LRS larvae at Beatty began 3 to 4 weeks earlier than at Chiloquin or Williamson. At Chiloquin, peak larval catches occurred 3 and 5 weeks after peak egg catches. The daily peak in larval drift at Chiloquin occurred approximately 1.5 to 2.0 hours after sunset. Nightly peak larval drift varied by location; larvae were captured earlier in the evening at sites closer to known spawning locations than sites farther away from these areas. The highest numerical catches of sucker-sized eggs were at Chiloquin indicating that this site is in close proximity to a spawning area. Numerical catches of older, more developed larval and juvenile suckers also were highest at Chiloquin. This may be due to the turbulent nature of this site, which could have swept larger fish into the drift. Proportional catches of older, more developed larval and juvenile suckers were highest at Sycan, Lone Pine, Power Station, and Fremont Bridge. This indicates these sites are located nearer to sucker nursery areas rather than spawning areas. Very few larval LRS were collected at Fremont Bridge at the south end of Upper Klamath Lake. Larval KLS-SNS densities at Fremont Bridge were the third highest of the seven sampling sites. Peak drift of larval KLS-SNS at Fremont Bridge occurred the week after peak drift of larval KLS-SNS at Williamson. Although inter-annual variation continues to appear in the larval drift data, our results continue to show consistent patterns of larval emigration in the drainage basin. In combination with data collected from the spawning movements and destinations of radio-tagged and PIT-tagged adult suckers, this larval drift data will provide a baseline standard by which to determine the effects of dam removal on the spawning distribution of endangered Klamath Basin suckers in the Sprague River.

Glycosylation Focuses Sequence Variation in the Influenza A Virus H1 Hemagglutinin Globular Domain

PubMed Central

Hensley, Scott E.; Hurt, Darrell E.; Bennink, Jack R.; Yewdell, Jonathan W.

2010-01-01

Antigenic drift in the influenza A virus hemagglutinin (HA) is responsible for seasonal reformulation of influenza vaccines. Here, we address an important and largely overlooked issue in antigenic drift: how does the number and location of glycosylation sites affect HA evolution in man? We analyzed the glycosylation status of all full-length H1 subtype HA sequences available in the NCBI influenza database. We devised the “flow index” (FI), a simple algorithm that calculates the tendency for viruses to gain or lose consensus glycosylation sites. The FI predicts the predominance of glycosylation states among existing strains. Our analyses show that while the number of glycosylation sites in the HA globular domain does not influence the overall magnitude of variation in defined antigenic regions, variation focuses on those regions unshielded by glycosylation. This supports the conclusion that glycosylation generally shields HA from antibody-mediated neutralization, and implies that fitness costs in accommodating oligosaccharides limit virus escape via HA hyperglycosylation. PMID:21124818

Low Frequency Radio Experiment (LORE)

NASA Astrophysics Data System (ADS)

Manoharan, P. K.; Naidu, Arun; Joshi, B. C.; Roy, Jayashree; Kate, G.; Pethe, Kaiwalya; Galande, Shridhar; Jamadar, Sachin; Mahajan, S. P.; Patil, R. A.

2016-03-01

In this paper, we present a case study of Low Frequency Radio Experiment (LORE) payload to probe the corona and the solar disturbances at solar offsets greater than 2 solar radii, i.e., at frequencies below 30 MHz. The LORE can be complimentary to the planned Indian solar mission, “Aditya-L1” and its other payloads as well as synergistic to ground-based interplanetary scintillation (IPS) observations, which are routinely carried out by the Ooty Radio Telescope. We discuss the baseline design and technical details of the proposed LORE and its particular suitability for providing measurements on the detailed time and frequency structure of fast drifting type-III and slow drifting type-II radio bursts with unprecedented time and frequency resolutions. We also brief the gonio-polarimetry, which is possible with better-designed antennas and state-of-the-art electronics, employing FPGAs and an intelligent data management system. These would enable us to make a wide range of studies, such as nonlinear plasma processes in the Sun-Earth distance, in-situ radio emission from coronal mass ejections (CMEs), interplanetary CME driven shocks, nature of ICMEs driving decelerating IP shocks and space weather effects of solar wind interaction regions.

An auxiliary frequency tracking system for general purpose lock-in amplifiers

NASA Astrophysics Data System (ADS)

Xie, Kai; Chen, Liuhao; Huang, Anfeng; Zhao, Kai; Zhang, Hanlu

2018-04-01

Lock-in amplifiers (LIAs) are designed to measure weak signals submerged by noise. This is achieved with a signal modulator to avoid low-frequency noise and a narrow-band filter to suppress out-of-band noise. In asynchronous measurement, even a slight frequency deviation between the modulator and the reference may lead to measurement error because the filter’s passband is not flat. Because many commercial LIAs are unable to track frequency deviations, in this paper we propose an auxiliary frequency tracking system. We analyze the measurement error caused by the frequency deviation and propose both a tracking method and an auto-tracking system. This approach requires only three basic parameters, which can be obtained from any general purpose LIA via its communications interface, to calculate the frequency deviation from the phase difference. The proposed auxiliary tracking system is designed as a peripheral connected to the LIA’s serial port, removing the need for an additional power supply. The test results verified the effectiveness of the proposed system; the modified commercial LIA (model SR-850) was able to track the frequency deviation and continuous drift. For step frequency deviations, a steady tracking error of less than 0.001% was achieved within three adjustments, and the worst tracking accuracy was still better than 0.1% for a continuous frequency drift. The tracking system can be used to expand the application scope of commercial LIAs, especially for remote measurements in which the modulation clock and the local reference are separated.

Ancestry informative markers in Amerindians from Brazilian Amazon.

PubMed

Luizon, Marcelo Rizzatti; Mendes-Junior, Celso Teixeira; De Oliveira, Silviene Fabiana; Simões, Aguinaldo Luiz

2008-01-01

Ancestry informative markers (AIMs) are genetic loci with large frequency differences between the major ethnic groups and are very useful in admixture estimation. However, their frequencies are poorly known within South American indigenous populations, making it difficult to use them in admixture studies with Latin American populations, such as the trihybrid Brazilian population. To minimize this problem, the frequencies of the AIMs FY-null, RB2300, LPL, AT3-I/D, Sb19.3, APO, and PV92 were determined via PCR and PCR-RFLP in four tribes from Brazilian Amazon (Tikúna, Kashinawa, Baníwa, and Kanamarí), to evaluate their potential for discriminating indigenous populations from Europeans and Africans, as well as discriminating each tribe from the others. Although capable of differentiating tribes, as evidenced by the exact test of population differentiation, a neighbor-joining tree suggests that the AIMs are useless in obtaining reliable reconstructions of the biological relationships and evolutionary history that characterize the villages and tribes studied. The mean allele frequencies from these AIMs were very similar to those observed for North American natives. They discriminated Amerindians from Africans, but not from Europeans. On the other hand, the neighbor-joining dendrogram separated Africans and Europeans from Amerindians with a high statistical support (bootstrap = 0.989). The relatively low diversity (G(ST) = 0.042) among North American natives and Amerindians from Brazilian Amazon agrees with the lack of intra-ethnic variation previously reported for these markers. Despite genetic drift effects, the mean allelic frequencies herein presented could be used as Amerindian parental frequencies in admixture estimates in urban Brazilian populations. (c) 2007 Wiley-Liss, Inc.

Wavelet filter analysis of local atmospheric pressure effects in the long-period tidal bands

NASA Astrophysics Data System (ADS)

Hu, X.-G.; Liu, L. T.; Ducarme, B.; Hsu, H. T.; Sun, H.-P.

2006-11-01

It is well known that local atmospheric pressure variations obviously affect the observation of short-period Earth tides, such as diurnal tides, semi-diurnal tides and ter-diurnal tides, but local atmospheric pressure effects on the long-period Earth tides have not been studied in detail. This is because the local atmospheric pressure is believed not to be sufficient for an effective pressure correction in long-period tidal bands, and there are no efficient methods to investigate local atmospheric effects in these bands. The usual tidal analysis software package, such as ETERNA, Baytap-G and VAV, cannot provide detailed pressure admittances for long-period tidal bands. We propose a wavelet method to investigate local atmospheric effects on gravity variations in long-period tidal bands. This method constructs efficient orthogonal filter bank with Daubechies wavelets of high vanishing moments. The main advantage of the wavelet filter bank is that it has excellent low frequency response and efficiently suppresses instrumental drift of superconducting gravimeters (SGs) without using any mathematical model. Applying the wavelet method to the 13-year continuous gravity observations from SG T003 in Brussels, Belgium, we filtered 12 long-period tidal groups into eight narrow frequency bands. Wavelet method demonstrates that local atmospheric pressure fluctuations are highly correlated with the noise of SG measurements in the period band 4-40 days with correlation coefficients higher than 0.95 and local atmospheric pressure variations are the main error source for the determination of the tidal parameters in these bands. We show the significant improvement of long-period tidal parameters provided by wavelet method in term of precision.

Temperature compensated and self-calibrated current sensor

DOEpatents

Yakymyshyn, Christopher Paul; Brubaker, Michael Allen; Yakymyshyn, Pamela Jane

2007-09-25

A method is described to provide temperature compensation and reduction of drift due to aging for a current sensor based on a plurality of magnetic field sensors positioned around a current carrying conductor. The offset voltage signal generated by each magnetic field sensor is used to correct variations in the output signal due to temperature variations and aging.

Conditions and growth rate of Rayleigh instability in a Hall thruster under the effect of ion temperature.

PubMed

Malik, Hitendra K; Singh, Sukhmander

2011-03-01

Rayleigh instability is investigated in a Hall thruster under the effect of finite temperature and density gradient of the plasma species. The instability occurs only when the frequency of the oscillations ω falls within a frequency band described by k{y}u₀+1/k_{y}∂²u_{0}/∂x²+Ω/k_{y}n_{0}∂n₀/∂x≪ω

Kilometer-Spaced GNSS Array for Ionospheric Irregularity Monitoring

NASA Astrophysics Data System (ADS)

Su, Yang

This dissertation presents automated, systematic data collection, processing, and analysis methods for studying the spatial-temporal properties of Global Navigation Satellite Systems (GNSS) scintillations produced by ionospheric irregularities at high latitudes using a closely spaced multi-receiver array deployed in the northern auroral zone. The main contributions include 1) automated scintillation monitoring, 2) estimation of drift and anisotropy of the irregularities, 3) error analysis of the drift estimates, and 4) multi-instrument study of the ionosphere. A radio wave propagating through the ionosphere, consisting of ionized plasma, may suffer from rapid signal amplitude and/or phase fluctuations known as scintillation. Caused by non-uniform structures in the ionosphere, intense scintillation can lead to GNSS navigation and high-frequency (HF) communication failures. With specialized GNSS receivers, scintillation can be studied to better understand the structure and dynamics of the ionospheric irregularities, which can be parameterized by altitude, drift motion, anisotropy of the shape, horizontal spatial extent and their time evolution. To study the structuring and motion of ionospheric irregularities at the sub-kilometer scale sizes that produce L-band scintillations, a closely-spaced GNSS array has been established in the auroral zone at Poker Flat Research Range, Alaska to investigate high latitude scintillation and irregularities. Routinely collecting low-rate scintillation statistics, the array database also provides 100 Hz power and phase data for each channel at L1/L2C frequency. In this work, a survey of seasonal and hourly dependence of L1 scintillation events over the course of a year is discussed. To efficiently and systematically study scintillation events, an automated low-rate scintillation detection routine is established and performed for each day by screening the phase scintillation index. The spaced-receiver technique is applied to cross-correlated phase and power measurements from GNSS receivers. Results of horizontal drift velocities and anisotropy ellipses derived from the parameters are shown for several detected events. Results show the possibility of routinely quantifying ionospheric irregularities by drifts and anisotropy. Error analysis on estimated properties is performed to further evaluate the estimation quality. Uncertainties are quantified by ensemble simulation of noise on the phase signals carried through to the observations of the spaced-receiver linear system. These covariances are then propagated through to uncertainties on drifts. A case study of a single scintillating satellite observed by the array is used to demonstrate the uncertainty estimation process. The distributed array is used in coordination with other measuring techniques such as incoherent scatter radar and optical all-sky imagers. These scintillations are correlated with auroral activity, based on all-sky camera images. Measurements and uncertainty estimates made over a 30-minute period are made and compared to a collocated incoherent scatter radar, and show good agreement in horizontal drift speed and direction during periods of scintillation for cases when the characteristic velocity is less than the drift velocity. The methods demonstrated are extensible to other zones and other GNSS arrays of varying size, number, ground distribution, and transmitter frequency.

In-hardware demonstration of model-independent adaptive tuning of noisy systems with arbitrary phase drift

DOE PAGES

Scheinker, Alexander; Baily, Scott; Young, Daniel; ...

2014-08-01

In this work, an implementation of a recently developed model-independent adaptive control scheme, for tuning uncertain and time varying systems, is demonstrated on the Los Alamos linear particle accelerator. The main benefits of the algorithm are its simplicity, ability to handle an arbitrary number of components without increased complexity, and the approach is extremely robust to measurement noise, a property which is both analytically proven and demonstrated in the experiments performed. We report on the application of this algorithm for simultaneous tuning of two buncher radio frequency (RF) cavities, in order to maximize beam acceptance into the accelerating electromagnetic fieldmore » cavities of the machine, with the tuning based only on a noisy measurement of the surviving beam current downstream from the two bunching cavities. The algorithm automatically responds to arbitrary phase shift of the cavity phases, automatically re-tuning the cavity settings and maximizing beam acceptance. Because it is model independent it can be utilized for continuous adaptation to time-variation of a large system, such as due to thermal drift, or damage to components, in which the remaining, functional components would be automatically re-tuned to compensate for the failing ones. We start by discussing the general model-independent adaptive scheme and how it may be digitally applied to a large class of multi-parameter uncertain systems, and then present our experimental results.« less

Experimental analysis of drift waves destabilization in a toroidal plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Riccardi, C.; Xuantong, D.; Salierno, M.

1997-11-01

This paper concerns the study of the development of turbulence in a toroidal magnetoplasma [C. Riccardi {ital et al.}, Plasma Phys. {bold 36}, 1791 (1994)]. This analysis has been performed by evaluating wave number, frequency spectra, and bicoherence coefficients of density fluctuations associated to drift wave propagation. Plasma parameters have been changed over a wide range, in order to identify and characterize density fluctuations both in absence and in presence of nonlinear phenomena. {copyright} {ital 1997 American Institute of Physics.}

Crossbar H-mode drift-tube linac design with alternative phase focusing for muon linac

NASA Astrophysics Data System (ADS)

Otani, M.; Futatsukawa, K.; Hasegawa, K.; Kitamura, R.; Kondo, Y.; Kurennoy, S.

2017-07-01

We have developed a Crossbar H-mode (CH) drift-tube linac (DTL) design with an alternative phase focusing (APF) scheme for a muon linac, in order to measure the anomalous magnetic moment and electric dipole moment (EDM) of muons at the Japan Proton Accelerator Research Complex (J-PARC). The CH-DTL accelerates muons from β = v/c = 0.08 to 0.28 at an operational frequency of 324 MHz. The design and results are described in this paper.

The Rubber Hand Illusion: Feeling of Ownership and Proprioceptive Drift Do Not Go Hand in Hand

PubMed Central

Rohde, Marieke; Di Luca, Massimiliano; Ernst, Marc O.

2011-01-01

In the Rubber Hand Illusion, the feeling of ownership of a rubber hand displaced from a participant's real occluded hand is evoked by synchronously stroking both hands with paintbrushes. A change of perceived finger location towards the rubber hand (proprioceptive drift) has been reported to correlate with this illusion. To measure the time course of proprioceptive drift during the Rubber Hand Illusion, we regularly interrupted stroking (performed by robot arms) to measure perceived finger location. Measurements were made by projecting a probe dot into the field of view (using a semi-transparent mirror) and asking participants if the dot is to the left or to the right of their invisible hand (Experiment 1) or to adjust the position of the dot to that of their invisible hand (Experiment 2). We varied both the measurement frequency (every 10 s, 40 s, 120 s) and the mode of stroking (synchronous, asynchronous, just vision). Surprisingly, with frequent measurements, proprioceptive drift occurs not only in the synchronous stroking condition but also in the two control conditions (asynchronous stroking, just vision). Proprioceptive drift in the synchronous stroking condition is never higher than in the just vision condition. Only continuous exposure to asynchronous stroking prevents proprioceptive drift and thus replicates the differences in drift reported in the literature. By contrast, complementary subjective ratings (questionnaire) show that the feeling of ownership requires synchronous stroking and is not present in the asynchronous stroking condition. Thus, subjective ratings and drift are dissociated. We conclude that different mechanisms of multisensory integration are responsible for proprioceptive drift and the feeling of ownership. Proprioceptive drift relies on visuoproprioceptive integration alone, a process that is inhibited by asynchronous stroking, the most common control condition in Rubber Hand Illusion experiments. This dissociation implies that conclusions about feelings of ownership cannot be drawn from measuring proprioceptive drift alone. PMID:21738756

Landmark-Based Drift Compensation Algorithm for Inertial Pedestrian Navigation

PubMed Central

Munoz Diaz, Estefania; Caamano, Maria; Fuentes Sánchez, Francisco Javier

2017-01-01

The navigation of pedestrians based on inertial sensors, i.e., accelerometers and gyroscopes, has experienced a great growth over the last years. However, the noise of medium- and low-cost sensors causes a high error in the orientation estimation, particularly in the yaw angle. This error, called drift, is due to the bias of the z-axis gyroscope and other slow changing errors, such as temperature variations. We propose a seamless landmark-based drift compensation algorithm that only uses inertial measurements. The proposed algorithm adds a great value to the state of the art, because the vast majority of the drift elimination algorithms apply corrections to the estimated position, but not to the yaw angle estimation. Instead, the presented algorithm computes the drift value and uses it to prevent yaw errors and therefore position errors. In order to achieve this goal, a detector of landmarks, i.e., corners and stairs, and an association algorithm have been developed. The results of the experiments show that it is possible to reliably detect corners and stairs using only inertial measurements eliminating the need that the user takes any action, e.g., pressing a button. Associations between re-visited landmarks are successfully made taking into account the uncertainty of the position. After that, the drift is computed out of all associations and used during a post-processing stage to obtain a low-drifted yaw angle estimation, that leads to successfully drift compensated trajectories. The proposed algorithm has been tested with quasi-error-free turn rate measurements introducing known biases and with medium-cost gyroscopes in 3D indoor and outdoor scenarios. PMID:28671622

Fluctuations and discrete particle noise in gyrokinetic simulation of drift waves

NASA Astrophysics Data System (ADS)

Jenkins, Thomas G.; Lee, W. W.

2007-03-01

The relevance of the gyrokinetic fluctuation-dissipation theorem (FDT) to thermal equilibrium and nonequilibrium states of the gyrokinetic plasma is explored, with particular focus being given to the contribution of weakly damped normal modes to the fluctuation spectrum. It is found that the fluctuation energy carried in the normal modes exhibits the proper scaling with particle count (as predicted by the FDT in thermal equilibrium) even in the presence of drift waves, which grow linearly and attain a nonlinearly saturated steady state. This favorable scaling is preserved, and the saturation amplitude of the drift wave unaffected, for parameter regimes in which the normal modes become strongly damped and introduce a broad spectrum of discreteness-induced background noise in frequency space.

Results of using the global positioning system to maintain the time and frequency synchronization in the Deep Space Network

NASA Technical Reports Server (NTRS)

Clements, P. A.; Kirk, A.; Unglaub, R.

1987-01-01

There are two hydrogen maser clocks located at each signal processing center (SPC) in the DSN. Close coordination of the time and frequency of the SPC clocks is needed to navigate spacecraft to the outer planets. A recent example was the Voyager spacecraft's encounter with Uranus in January 1986. The clocks were adjusted with the goal of minimizing time and frequency offsets between the SPCs at encounter. How time and frequency at each SPC is estimated using data acquired from the Global Positioning System Timing Receivers operating on the NBS-BIH (National Bureau of Standards-Bureau International de l'Heure) tracking schedule is described. These data are combined with other available timing receiver data to calculate the time offset estimates. The adjustment of the clocks is described. It was determined that long range hydrogen maser drift is quite predictable and adjustable within limits. This enables one to minimize time and frequency differences between the three SPCs for many months by matching the drift rates of the three standards. Data acquisition and processing techniques using a Kalman filter to make estimates of time and frequency offsets between the clocks at the SPCs and UTC(NBS) (Coordinated Universal Time realized at NBS) are described.

[Exploration of the concept of genetic drift in genetics teaching of undergraduates].

PubMed

Wang, Chun-ming

2016-01-01

Genetic drift is one of the difficulties in teaching genetics due to its randomness and probability which could easily cause conceptual misunderstanding. The “sampling error" in its definition is often misunderstood because of the research method of “sampling", which disturbs the results and causes the random changes in allele frequency. I analyzed and compared the definitions of genetic drift in domestic and international genetic textbooks, and found that the definitions containing “sampling error" are widely adopted but are interpreted correctly in only a few textbooks. Here, the history of research on genetic drift, i.e., the contributions of Wright, Fisher and Kimura, is introduced. Moreover, I particularly describe two representative articles recently published about genetic drift teaching of undergraduates, which point out that misconceptions are inevitable for undergraduates during the studying process and also provide a preliminary solution. Combined with my own teaching practice, I suggest that the definition of genetic drift containing “sampling error" can be adopted with further interpretation, i.e., “sampling error" is random sampling among gametes when generating the next generation of alleles which is equivalent to a random sampling of all gametes participating in mating in gamete pool and has no relationship with artificial sampling in general genetics studies. This article may provide some help in genetics teaching.

A technique for inferring zonal irregularity drift from single-station GNSS measurements of intensity (S4) and phase (σφ) scintillations

NASA Astrophysics Data System (ADS)

Carrano, Charles S.; Groves, Keith M.; Rino, Charles L.; Doherty, Patricia H.

2016-08-01

The zonal drift of ionospheric irregularities at low latitudes is most commonly measured by cross-correlating observations of a scintillating satellite signal made with a pair of closely spaced antennas. The Air Force Research Laboratory-Scintillation Network Decision Aid (AFRL-SCINDA) network operates a small number of very high frequency (VHF) spaced-receiver systems at low latitudes for this purpose. A far greater number of Global Navigation Satellite System (GNSS) scintillation monitors are operated by the AFRL-SCINDA network (25-30) and the Low-Latitude Ionospheric Sensor Network (35-50), but the receivers are too widely separated from each other for cross-correlation techniques to be effective. In this paper, we present an alternative approach that leverages the weak scatter scintillation theory to infer the zonal irregularity drift from single-station GNSS measurements of S4, σφ, and the propagation geometry. Unlike the spaced-receiver technique, this approach requires assumptions regarding the height of the scattering layer (which introduces a bias in the drift estimates) and the spectral index of the irregularities (which affects the spread of the drift estimates about the mean). Nevertheless, theory and experiment suggest that the ratio of σφ to S4 is less sensitive to these parameters than it is to the zonal drift. We validate the technique using VHF spaced-receiver measurements of zonal irregularity drift obtained from the AFRL-SCINDA network. While the spaced-receiver technique remains the preferred way to monitor the drift when closely spaced antenna pairs are available, our technique provides a new opportunity to monitor zonal irregularity drift using regional or global networks of widely separated GNSS scintillation monitors.

Stokes drift

NASA Astrophysics Data System (ADS)

van den Bremer, T. S.; Breivik, Ø.

2017-12-01

During its periodic motion, a particle floating at the free surface of a water wave experiences a net drift velocity in the direction of wave propagation, known as the Stokes drift (Stokes 1847 Trans. Camb. Philos. Soc. 8, 441-455). More generally, the Stokes drift velocity is the difference between the average Lagrangian flow velocity of a fluid parcel and the average Eulerian flow velocity of the fluid. This paper reviews progress in fundamental and applied research on the induced mean flow associated with surface gravity waves since the first description of the Stokes drift, now 170 years ago. After briefly reviewing the fundamental physical processes, most of which have been established for decades, the review addresses progress in laboratory and field observations of the Stokes drift. Despite more than a century of experimental studies, laboratory studies of the mean circulation set up by waves in a laboratory flume remain somewhat contentious. In the field, rapid advances are expected due to increasingly small and cheap sensors and transmitters, making widespread use of small surface-following drifters possible. We also discuss remote sensing of the Stokes drift from high-frequency radar. Finally, the paper discusses the three main areas of application of the Stokes drift: in the coastal zone, in Eulerian models of the upper ocean layer and in the modelling of tracer transport, such as oil and plastic pollution. Future climate models will probably involve full coupling of ocean and atmosphere systems, in which the wave model provides consistent forcing on the ocean surface boundary layer. Together with the advent of new space-borne instruments that can measure surface Stokes drift, such models hold the promise of quantifying the impact of wave effects on the global atmosphere-ocean system and hopefully contribute to improved climate projections. This article is part of the theme issue 'Nonlinear water waves'.

The effects of selection and genetic drift on the genomic distribution of sexually antagonistic alleles.

PubMed

Mullon, Charles; Pomiankowski, Andrew; Reuter, Max

2012-12-01

Sexual antagonism (SA) occurs when an allele that is beneficial to one sex, is detrimental to the other. This conflict can result in balancing, directional, or disruptive selection acting on SA alleles. A body of theory predicts the conditions under which sexually antagonistic mutants will invade and be maintained in stable polymorphism under balancing selection. There remains, however, considerable debate over the distribution of SA genetic variation across autosomes and sex chromosomes, with contradictory evidence coming from data and theory. In this article, we investigate how the interplay between selection and genetic drift will affect the genomic distribution of sexually antagonistic alleles. The effective population sizes can differ between the autosomes and the sex chromosomes due to a number of ecological factors and, consequently, the distribution of SA genetic variation in genomes. In general, we predict the interplay of SA selection and genetic drift should lead to the accumulation of SA alleles on the X in male heterogametic (XY) species and, on the autosomes in female heterogametic (ZW) species, especially when sexual competition is strong among males. © 2012 The Author(s). Evolution© 2012 The Society for the Study of Evolution.

Changes in variation at the MHC class II DQA locus during the final demise of the woolly mammoth

NASA Astrophysics Data System (ADS)

Pečnerová, Patrícia; Díez-Del-Molino, David; Vartanyan, Sergey; Dalén, Love

2016-05-01

According to the nearly-neutral theory of evolution, the relative strengths of selection and drift shift in favour of drift at small population sizes. Numerous studies have analysed the effect of bottlenecks and small population sizes on genetic diversity in the MHC, which plays a central role in pathogen recognition and immune defense and is thus considered a model example for the study of adaptive evolution. However, to understand changes in genetic diversity at loci under selection, it is necessary to compare the genetic diversity of a population before and after the bottleneck. In this study, we analyse three fragments of the MHC DQA gene in woolly mammoth samples radiocarbon dated to before and after a well-documented bottleneck that took place about ten thousand years ago. Our results indicate a decrease in observed heterozygosity and number of alleles, suggesting that genetic drift had an impact on the variation on MHC. Based on coalescent simulations, we found no evidence of balancing selection maintaining MHC diversity during the Holocene. However, strong trans-species polymorphism among mammoths and elephants points to historical effects of balancing selection on the woolly mammoth lineage.

Water Temperature, Invertebrate Drift, and the Scope for Growth for Juvenile Spring Chinook Salmon.

NASA Astrophysics Data System (ADS)

Lovtang, J. C.; Li, H. W.

2005-05-01

We present a bioenergetic assessment of habitat quality based on the concept of the scope for growth for juvenile Chinook salmon. Growth of juvenile salmonids during the freshwater phase of their life history depends on a balance between two main factors: energy intake and metabolic costs. The metabolic demands of temperature and the availability of food play integral roles in determining the scope for growth of juvenile salmonids in stream systems. We investigated differences in size of juvenile spring Chinook salmon in relation to water temperature and invertebrate drift density in six unique study reaches in the Metolius River Basin, a tributary of the Deschutes River in Central Oregon. This project was initiated to determine the relative quality and potential productivity of habitat in the Metolius Basin prior to the reintroduction of spring Chinook salmon, which were extirpated from the middle Deschutes basin in the early 1970's due to the construction of a hydroelectric dam. Variations in the growth of juvenile Chinook salmon can be described using a multiple regression model of water temperature and invertebrate drift density. We also discuss the relationships between our bioenergetic model, variations of the ideal free distribution model, and physiological growth models.

New ultra-high resolution dye laser spectrometer utilizing a non-tunable reference resonator

NASA Astrophysics Data System (ADS)

Helmcke, J.; Snyder, J. J.; Morinaga, A.; Mensing, F.; Gläser, M.

1987-06-01

A new dye laser spectrometer utilizing a non-tunable reference resonator is described. The resonator consists of two Zerodur mirrors optically contacted to a Zerodur spacer. Frequency scanning of the laser is provided by acoustooptic modulation. Residual drifts of the resonator frequency — measured on line — are compensated automatically by corresponding corrections of the modulation frequency. The stability during several hours and the resettability of the dye laser frequency are±2.5 kHz and±10 kHz, respectively.

The effects of the pre-reversal ExB drift, the EIA asymmetry, and magnetic activity on the equatorial spread F during solar maximum

NASA Astrophysics Data System (ADS)

Lee, C.-C.; Liu, J.-Y.; Reinisch, B. W.; Chen, W.-S.; Chu, F.-D.

2005-03-01

We use a digisonde at Jicamarca and a chain of GPS receivers on the west side of South America to investigate the effects of the pre-reversal enhancement (PRE) in ExB drift, the asymmetry (Ia) of equatorial ionization anomaly (EIA), and the magnetic activity (Kp) on the generation of equatorial spread F (ESF). Results show that the ESF appears frequently in summer (November, December, January, and February) and equinoctial (March, April, September, and October) months, but rarely in winter (May, June, July, and August) months. The seasonal variation in the ESF is associated with those in the PRE ExB drift and Ia. The larger ExB drift (>20m/s) and smaller |Ia| (<0.3) in summer and equinoctial months provide a preferable condition to development the ESF. Conversely, the smaller ExB drift and larger |Ia| are responsible for the lower ESF occurrence in winter months. Regarding the effects of magnetic activity, the ESF occurrence decreases with increasing Kp in the equinoctial and winter months, but not in the summer months. Furthermore, the larger and smaller ExB drifts are presented under the quiet (Kp<3) and disturbed (Kp≥3) conditions, respectively. These results indicate that the suppression in ESF and the decrease in ExB drifts are mainly caused by the decrease in the eastward electric field.

Distributions of solar drift-pair bursts in frequency from decameter radio observations

NASA Astrophysics Data System (ADS)

Stanislavsky, Aleksander; Volvach, Yaroslav

2017-04-01

Statement of the Problem: Solar drift-pair (DP) bursts are one of interesting manifestations of solar activity. Observed during the solar storms of type III bursts, they demonstrate a very simple form on dynamic radio spectra as two short components separated in time, often the second component being the full repetition of the first. As is well known, type III bursts are produced by the accelerated electrons propagating along open magnetic field lines in solar corona. However, no each storm of type III bursts leads to any DP. The role of electron beams in the generation of DPs remains unclear. Solar DPs are detected by ground-based instruments at decameter and meter wavelengths, but each individual DP occupies only a limited bandwidth in the frequency range. The bursts drift in frequency, and their frequency drift rate can be both negative and positive (so-called the forward and reverse DPs), from -2 MHz/s to 6 MHz/s [1]. Besides, there are cases of vertical DPs, which occur simultaneously in all the frequencies within their bandwidth. It is difficult to interpret them by means of a moving source, as any exciting agent responsible for such bursts would travel with velocities faster than velocity of light [2]. Methodology & Experimental Orientation: New features of modern low-frequency radio astronomy allow us to study the empirical properties of DPs more deeply than ever before. Our results are based on the recent radio data (during 10-12 July of 2015) obtained with help of the UTR-2 radio telescope at frequencies 9-33 MHz with the time resolution of 50 ms and the frequency resolution of 4 kHz. We have identified 301 DP bursts in which 209 events were forward (FDP), and the rest were reverse (RDP). Results & Significance: According to the data, the occurrence of FDPs decreased at high frequencies, whereas the number of RDPs had an opposite tendency, they rarely occured at lower frequencies. During the observational session, at 20-25 MHz almost the same amount of FDPs and RDPs could be found. Unfortunately, the full distributions, characterizing the occurrence of FDPs and RDPs over frequency, are truncated due to limitations on the frequency bandwidth available for observations by our instrument. Nevertheless, by the statistical analysis of experimental data we have recovered the probabilistic distributions. If the plasma mechanism is responsible for emergence of DPs, a possible interpretation of their properties is that FDPs and RDPs originate from different (probably overlapping) regions in solar corona. Moreover, the study indicates that FDPs can be detected below the ionosphere cutoff by using solar space-based observatories provided that their receivers on board would have appropriate sensitivity and frequency-time resolution. In this regard, it will be promising to perform thorough observations of RDPs with new low-frequency ultra-wideband radio telescopes (such as GURT, MWA, LWA, LOFAR) covering a more frequency range of solar radio emission where DPs occur. [1] Ya.S. Volvach, A.A. Stanislavsky, A.A. Konovalenko, A.A. Koval, V.V. Dorovskyy, Advances in Astronomy and Space Physics, Vol. 6, No. 1, p. 24-27 (2016)/DOI 10.17721/2227-1481.6.24-27 [2] G. Thejappa, PhD thesis, Bangalore University, 1988.

Operational amplifier with adjustable frequency response.

PubMed

Gulisek, D; Hencek, M

1978-01-01

The authors describe an operational amplifier with an adjustable frequency response and its use in membrane physiology, using the voltage clamp and current clamp method. The amplifier eliminates feedback poles causing oscillation. It consists of a follower with a high input resistance in the form of a tube and of an actual amplifier with an adjustable frequency response allowing the abolition of clicks by one pole and of oscillation by two poles in the 500 Hz divided by infinity range. Further properties of the amplifier: a long-term voltage drift of 1 mv, a temperature voltage drift of 0.5 mv/degrees K, input resistance greater than 1 GOhm, amplification greater than 80 dB, output +/- 12 v, 25 ma, noise, measured from the width of the oscilloscope track in the presence of a ray of normal brightness, not exceeding 50 muv in the 0-250 kHz band, f1 = 1 MHz. A short report on the amplifier was published a few years ago (Gulísek and Hencek 1973).

High frequency fishbone driven by passing energetic ions in tokamak plasmas

NASA Astrophysics Data System (ADS)

Wang, Feng; Yu, L. M.; Fu, G. Y.; Shen, Wei

2017-05-01

High frequency fishbone instability driven by passing energetic ions was first reported in the Princeton beta experiment with tangential neutral-beam-injection (Heidbrink et al 1986 Phys. Rev. Lett. 57 835-8). It could play an important role for ITER-like burning plasmas, where α particles are mostly passing particles. In this work, a generalized energetic ion distribution function and finite drift orbit width effect are considered to improve the theoretical model for passing particle driving fishbone instability. For purely passing energetic ions with zero drift orbit width, the kinetic energy δ {{W}k} is derived analytically. The derived analytic expression is more accurate as compared to the result of previous work (Wang 2001 Phys. Rev. Lett. 86 5286-8). For a generalized energetic ion distribution function, the fishbone dispersion relation is derived and is solved numerically. Numerical results show that broad and off-axis beam density profiles can significantly increase the beam ion beta threshold {βc} for instability and decrease mode frequency.

High frequency fishbone driven by passing energetic ions in tokamak plasmas

DOE PAGES

Wang, Feng; Yu, L. M.; Fu, G. Y.; ...

2017-03-22

High frequency fishbone instability driven by passing energetic ions was first reported in the Princeton beta experiment with tangential neutral-beam-injection (Heidbrink et al 1986 Phys. Rev. Lett. 57 835–8). It could play an important role for ITER-like burning plasmas, where α particles are mostly passing particles. In this work, a generalized energetic ion distribution function and finite drift orbit width effect are considered to improve the theoretical model for passing particle driving fishbone instability. For purely passing energetic ions with zero drift orbit width, the kinetic energymore » $$\\delta {{W}_{k}}$$ is derived analytically. The derived analytic expression is more accurate as compared to the result of previous work. For a generalized energetic ion distribution function, the fishbone dispersion relation is derived and is solved numerically. As a result, numerical results show that broad and off-axis beam density profiles can significantly increase the beam ion beta threshold $${{\\beta}_{c}}$$ for instability and decrease mode frequency.« less

Variation in body condition during the post-moult foraging trip of southern elephant seals and its consequences on diving behaviour.

PubMed

Richard, Gaëtan; Vacquié-Garcia, Jade; Jouma'a, Joffrey; Picard, Baptiste; Génin, Alexandre; Arnould, John P Y; Bailleul, Frédéric; Guinet, Christophe

2014-07-15

Mature female southern elephant seals (Mirounga leonina) come ashore only in October to breed and in January to moult, spending the rest of the year foraging at sea. Mature females may lose as much as 50% of their body mass, mostly in lipid stores, during the breeding season due to fasting and lactation. When departing to sea, post-breeding females are negatively buoyant, and the relative change in body condition (i.e. density) during the foraging trip has previously been assessed by monitoring the descent rate during drift dives. However, relatively few drift dives are performed, resulting in low resolution of the temporal reconstruction of body condition change. In this study, six post-breeding females were equipped with time-depth recorders and accelerometers to investigate whether changes in active swimming effort and speed could be used as an alternative method of monitoring density variations throughout the foraging trip. In addition, we assessed the consequences of density change on the swimming efforts of individuals while diving and investigated the effects on dive duration. Both descent swimming speed and ascent swimming effort were found to be strongly correlated to descent rate during drift dives, enabling the fine-scale monitoring of seal density change over the whole trip. Negatively buoyant seals minimized swimming effort during descents, gliding down at slower speeds, and reduced their ascent swimming effort to maintain a nearly constant swimming speed as their buoyancy increased. One per cent of seal density variation over time was found to induce a 20% variation in swimming effort during dives with direct consequences on dive duration. © 2014. Published by The Company of Biologists Ltd.

Ring lasers - a brief history

NASA Astrophysics Data System (ADS)

Klein, Tony

2017-10-01

Used these days in inertial navigation, ring lasers are also used in recording the tiniest variations in the Earth's spin, as well in detecting earthquakes and even the drift of continents. How did it all begin?

Geomagnetic imprinting predicts spatio-temporal variation in homing migration of pink and sockeye salmon.

PubMed

Putman, Nathan F; Jenkins, Erica S; Michielsens, Catherine G J; Noakes, David L G

2014-10-06

Animals navigate using a variety of sensory cues, but how each is weighted during different phases of movement (e.g. dispersal, foraging, homing) is controversial. Here, we examine the geomagnetic and olfactory imprinting hypotheses of natal homing with datasets that recorded variation in the migratory routes of sockeye (Oncorhynchus nerka) and pink (Oncorhynchus gorbuscha) salmon returning from the Pacific Ocean to the Fraser River, British Columbia. Drift of the magnetic field (i.e. geomagnetic imprinting) uniquely accounted for 23.2% and 44.0% of the variation in migration routes for sockeye and pink salmon, respectively. Ocean circulation (i.e. olfactory imprinting) predicted 6.1% and 0.1% of the variation in sockeye and pink migration routes, respectively. Sea surface temperature (a variable influencing salmon distribution but not navigation, directly) accounted for 13.0% of the variation in sockeye migration but was unrelated to pink migration. These findings suggest that geomagnetic navigation plays an important role in long-distance homing in salmon and that consideration of navigation mechanisms can aid in the management of migratory fishes by better predicting movement patterns. Finally, given the diversity of animals that use the Earth's magnetic field for navigation, geomagnetic drift may provide a unifying explanation for spatio-temporal variation in the movement patterns of many species. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Quantitative Genetic Architecture at Latitudinal Range Boundaries: Reduced Variation but Higher Trait Independence.

PubMed

Paccard, Antoine; Van Buskirk, Josh; Willi, Yvonne

2016-05-01

Species distribution limits are hypothesized to be caused by small population size and limited genetic variation in ecologically relevant traits, but earlier studies have not evaluated genetic variation in multivariate phenotypes. We asked whether populations at the latitudinal edges of the distribution have altered quantitative genetic architecture of ecologically relevant traits compared with midlatitude populations. We calculated measures of evolutionary potential in nine Arabidopsis lyrata populations spanning the latitudinal range of the species in eastern and midwestern North America. Environments at the latitudinal extremes have reduced water availability, and therefore plants were assessed under wet and dry treatments. We estimated genetic variance-covariance (G-) matrices for 10 traits related to size, development, and water balance. Populations at southern and northern distribution edges had reduced levels of genetic variation across traits, but their G-matrices were more spherical; G-matrix orientation was unrelated to latitude. As a consequence, the predicted short-term response to selection was at least as strong in edge populations as in central populations. These results are consistent with genetic drift eroding variation and reducing the effectiveness of correlational selection at distribution margins. We conclude that genetic variation of isolated traits poorly predicts the capacity to evolve in response to multivariate selection and that the response to selection may frequently be greater than expected at species distribution margins because of genetic drift.

Upper atmosphere differences between northern and southern high latitudes: The role of magnetic field asymmetry

NASA Astrophysics Data System (ADS)

Förster, Matthias; Cnossen, Ingrid

2013-09-01

The nondipolar portions of the Earth's main magnetic field constitute substantial differences between the two hemispheres. Beside the magnetic flux densities and patterns being different in the Northern Hemisphere (NH) and Southern Hemisphere (SH), also the offset between the invariant magnetic and the geographic poles is larger in the SH than in the NH. We investigated the effects of this magnetic field asymmetry on the high-latitude thermosphere and ionosphere using global numerical simulations and compared our results with recent observations. While the effects on the high-latitude plasma convection are small, the consequences for the neutral wind circulation are substantial. The cross-polar neutral wind and ion drift velocities are generally larger in the NH than the SH, and the hemispheric difference shows a semidiurnal variation. The neutral wind vorticity is likewise larger in the NH than in the SH, with the difference probably becoming larger for higher solar activity. In contrast, the spatial variance of the neutral wind is considerably larger in the SH polar region, with the hemispheric difference showing a strong semidiurnal variation. Its phase is similar to the phase of the semidiurnal variation of the hemispheric magnitude differences. Hemispheric differences in ion drift and neutral wind magnitude are most likely caused partly by the larger magnetic flux densities in the near-polar regions of the SH and partly by the larger offset between the invariant and geographic pole in the SH, while differences in spatial variance are probably just caused by the latter. We conclude that the asymmetry of the magnetic field, both in strength and in orientation, establishes substantial hemispheric differences in the neutral wind and plasma drift in the high-latitude upper atmosphere, which can help to explain observed hemispheric differences found with the Cluster/Electron Drift Instrument (EDI) and the Challenging Minisatellite Payload (CHAMP).

On the Harmonic Coupling of Components in Pairs of IIIb-III Bursts at Decameter Wavelengths

NASA Astrophysics Data System (ADS)

Brazhenko, A. I.; Melnik, V. N.; Frantsuzenko, A. V.; Dorovskyy, V. V.; Rucker, H. O.; Panchenko, M.

2015-06-01

The properties of IIIb-III pairs observed by the URAN-2 radioThe properties of IIIb-III pairs observed by the URAN-2 radiotelescope at frequencies 16-32 MHz are analyzed. Observations of these bursts were hold in April, June and September 2011. Durations, frequency drift rates, simultaneous frequency ratio of pairs components and their polarizations are analyzed. Pro and contra of IIIb-III harmonic connection are discussed.

Whispering gallery mode resonators for frequency metrology applications

NASA Astrophysics Data System (ADS)

Baumgartel, Lukas

This dissertation describes an investigation into the use of whispering gallery mode (WGM) resonators for applications towards frequency reference and metrology. Laser stabilization and the measurement of optical frequencies have enabled myriad technologies of both academic and commercial interest. A technology which seems to span both motivations is optical atomic clocks. These devices are virtually unimaginable without the ultra stable lasers plus frequency measurement and down-conversion afforded by Fabry Perot (FP) cavities and model-locked laser combs, respectively. However, WGM resonators can potentially perform both of these tasks while having the distinct advantages of compactness and simplicity. This work represents progress towards understanding and mitigating the performance limitations of WGM cavities for such applications. A system for laser frequency stabilization to a the cavity via the Pound-Drever-Hall (PDH) method is described. While the laser lock itself is found to perform at the level of several parts in 1015, a variety of fundamental and technical mechanisms destabilize the WGM frequency itself. Owing to the relatively large thermal expansion coefficients in optical crystals, environmental temperature drifts set the stability limit at time scales greater than the thermal relaxation time of the crystal. Uncompensated, these drifts pull WGM frequencies about 3 orders of magnitude more than they would in an FP cavity. Thus, two temperature compensation schemes are developed. An active scheme measures and stabilizes the mode volume temperature to the level of several nK, reducing the effective temperature coefficient of the resonator to 1.7x10-7 K-1; simulations suggest that the value could eventually be as low as 3.5x10-8 K-1, on par with the aforementioned FP cavities. A second, passive scheme is also described, which employs a heterogeneous resonator structure that capitalizes on the thermo-mechanical properties of one material and the optical properties of another. Calculations show that a temperature coefficient zero-crossing can be achieved, and encouraging initial experimental results are presented. At shorter time scales, fundamental thermal and technical noise sources define stability limits. The relative strengths of thermorefractive, thermoelastic, and Brownian motion are outlined, along with the level at which they can expect to be observed and some approaches to minimize them. It is shown that variations in the coupling gap pull the frequency at about 10 Hz/nm. A method for calculating frequency noise density caused by laser amplitude fluctuations is presented. Frequency comb generation in WGM resonators is also discussed. It is shown that cavity dispersion can be engineered through geometric parameters, yielding a microcomb with initial sidebands at 1 FSR from the pump. Such combs are thought to be coherent. Also described is a microcomb generated by a PDH locked pump laser. The resulting microwave beatnote can be changed from noisy to quiet by changing the offset of this lock. An investigation of optical to microwave down-conversion is conducted.

A temperature characteristic research and compensation design for micro-machined gyroscope

NASA Astrophysics Data System (ADS)

Fu, Qiang; di, Xin-Peng; Chen, Wei-Ping; Yin, Liang; Liu, Xiao-Wei

2017-02-01

The all temperature range stability is the most important technology of MEMS angular velocity sensor according to the principle of capacity detecting. The correlation between driven force and zero-point of sensor is summarized according to the temperature characteristic of the air-damping and resonant frequency of sensor header. A constant trans-conductance high-linearity amplifier is designed to realize the low phase-drift and low amplitude-drift interface circuit at all-temperature range. The chip is fabricated in a standard 0.5 μm CMOS process. Compensation achieved by driven force to zero-point drift caused by the stiffness of physical construction and air-damping is adopted. Moreover, the driven force can be obtained from the drive-circuit to avoid the complex sampling. The test result shows that the zero-point drift is lower than 30∘/h (1-sigma) at the temperature range from -40∘C to 60∘C after three-order compensation made by driven force.

Method for enhancing the resolving power of ion mobility separations over a limited mobility range

DOEpatents

Shvartsburg, Alexandre A; Tang, Keqi; Smith, Richard D

2014-09-23

A method for raising the resolving power, specificity, and peak capacity of conventional ion mobility spectrometry is disclosed. Ions are separated in a dynamic electric field comprising an oscillatory field wave and opposing static field, or at least two counter propagating waves with different parameters (amplitude, profile, frequency, or speed). As the functional dependencies of mean drift velocity on the ion mobility in a wave and static field or in unequal waves differ, only single species is equilibrated while others drift in either direction and are mobility-separated. An ion mobility spectrum over a limited range is then acquired by measuring ion drift times through a fixed distance inside the gas-filled enclosure. The resolving power in the vicinity of equilibrium mobility substantially exceeds that for known traveling-wave or drift-tube IMS separations, with spectra over wider ranges obtainable by stitching multiple segments. The approach also enables low-cutoff, high-cutoff, and bandpass ion mobility filters.

Hydrodynamic phonon drift and second sound in a (20,20) single-wall carbon nanotube

NASA Astrophysics Data System (ADS)

Lee, Sangyeop; Lindsay, Lucas

2017-05-01

Two hydrodynamic features of phonon transport, phonon drift and second sound, in a (20,20) single-wall carbon nanotube (SWCNT) are discussed using lattice dynamics calculations employing an optimized Tersoff potential for atomic interactions. We formally derive a formula for the contribution of drift motion of phonons to total heat flux at steady state. It is found that the drift motion of phonons carries more than 70 % and 90 % of heat at 300 and 100 K, respectively, indicating that phonon flow can be reasonably approximated as hydrodynamic if the SWCNT is long enough to avoid ballistic phonon transport. The dispersion relation of second sound is derived from the Peierls-Boltzmann transport equation with Callaway's scattering model and quantifies the speed of second sound and its relaxation. The speed of second sound is around 4000 m/s in a (20,20) SWCNT and the second sound can propagate more than 10 µm in an isotopically pure (20,20) SWCNT for frequency around 1 GHz at 100 K.

Abnormal Fixational Eye Movements in Amblyopia.

PubMed

Shaikh, Aasef G; Otero-Millan, Jorge; Kumar, Priyanka; Ghasia, Fatema F

2016-01-01

Fixational saccades shift the foveal image to counteract visual fading related to neural adaptation. Drifts are slow eye movements between two adjacent fixational saccades. We quantified fixational saccades and asked whether their changes could be attributed to pathologic drifts seen in amblyopia, one of the most common causes of blindness in childhood. Thirty-six pediatric subjects with varying severity of amblyopia and eleven healthy age-matched controls held their gaze on a visual target. Eye movements were measured with high-resolution video-oculography during fellow eye-viewing and amblyopic eye-viewing conditions. Fixational saccades and drifts were analyzed in the amblyopic and fellow eye and compared with controls. We found an increase in the amplitude with decreased frequency of fixational saccades in children with amblyopia. These alterations in fixational eye movements correlated with the severity of their amblyopia. There was also an increase in eye position variance during drifts in amblyopes. There was no correlation between the eye position variance or the eye velocity during ocular drifts and the amplitude of subsequent fixational saccade. Our findings suggest that abnormalities in fixational saccades in amblyopia are independent of the ocular drift. This investigation of amblyopia in pediatric age group quantitatively characterizes the fixation instability. Impaired properties of fixational saccades could be the consequence of abnormal processing and reorganization of the visual system in amblyopia. Paucity in the visual feedback during amblyopic eye-viewing condition can attribute to the increased eye position variance and drift velocity.

Abnormal Fixational Eye Movements in Amblyopia

PubMed Central

Shaikh, Aasef G.; Otero-Millan, Jorge; Kumar, Priyanka; Ghasia, Fatema F.

2016-01-01

Purpose Fixational saccades shift the foveal image to counteract visual fading related to neural adaptation. Drifts are slow eye movements between two adjacent fixational saccades. We quantified fixational saccades and asked whether their changes could be attributed to pathologic drifts seen in amblyopia, one of the most common causes of blindness in childhood. Methods Thirty-six pediatric subjects with varying severity of amblyopia and eleven healthy age-matched controls held their gaze on a visual target. Eye movements were measured with high-resolution video-oculography during fellow eye-viewing and amblyopic eye-viewing conditions. Fixational saccades and drifts were analyzed in the amblyopic and fellow eye and compared with controls. Results We found an increase in the amplitude with decreased frequency of fixational saccades in children with amblyopia. These alterations in fixational eye movements correlated with the severity of their amblyopia. There was also an increase in eye position variance during drifts in amblyopes. There was no correlation between the eye position variance or the eye velocity during ocular drifts and the amplitude of subsequent fixational saccade. Our findings suggest that abnormalities in fixational saccades in amblyopia are independent of the ocular drift. Discussion This investigation of amblyopia in pediatric age group quantitatively characterizes the fixation instability. Impaired properties of fixational saccades could be the consequence of abnormal processing and reorganization of the visual system in amblyopia. Paucity in the visual feedback during amblyopic eye-viewing condition can attribute to the increased eye position variance and drift velocity. PMID:26930079

Application of the Strong Scatter Theory to the Interpretation of Ionospheric Scintillation Measurements along Geostationary Satellite Links at VHF and L-band

NASA Astrophysics Data System (ADS)

Carrano, C. S.; Groves, K. M.; Basu, S.; Mackenzie, E.; Sheehan, R. E.

2013-12-01

In a previous work, we demonstrated that ionospheric turbulence parameters may be inferred from amplitude scintillations well into in the strong scatter regime [Carrano et al., International Journal of Geophysics, 2012]. This technique, called Iterative Parameter Estimation (IPE), uses the strong scatter theory and numerical inversion to estimate the parameters of an ionospheric phase screen (turbulent intensity, phase spectral index, and irregularity zonal drift) consistent with the observed scintillations. The optimal screen parameters are determined such that the theoretical intensity spectrum on the ground best matches the measured intensity spectrum in a least squares sense. We use this technique to interpret scintillation measurements collected during a campaign at Ascension Island (7.96°S, 14.41°W) in March 2000, led by Santimay Basu and his collaborators from Air Force Research Laboratory. Geostationary satellites broadcasting radio signals at VHF and L-band were monitored along nearly co-linear links, enabling a multi-frequency analysis of scintillations with the same propagation geometry. The VHF data were acquired using antennas spaced in the magnetic east-west direction, which enabled direct measurement of the zonal irregularity drift. We show that IPE analysis of the VHF and L-Band scintillations, which exhibited very different statistics due to the wide frequency separation, yields similar estimates of the phase screen parameters that specify the disturbed ionospheric medium. This agreement provides confidence in our phase screen parameter estimates. It also suggests a technique for extrapolating scintillation measurements to frequencies other than those observed that is valid in the case of strong scatter. We find that IPE estimates of the zonal irregularity drift, made using scintillation observations along single space-to-ground link, are consistent with those measured independently using the spaced antenna technique. This encouraging result suggests one may measure the zonal irregularity drift at scintillation monitoring stations equipped with only a single channel receiver, so that the spaced-antenna technique cannot be employed. We noted that the scintillation index (S4) at L-band commonly exceeded that at VHF early in the evening when the irregularities were most intense, followed by one or more reversals of this trend at later local times as aging irregularities decayed and newly formed bubbles drifted over the station. We use the strong scatter theory to explain this perhaps counter-intuitive situation (one would normally expect a higher S4 at the lower frequency) in terms of strong refractive focusing.

Temperature modulation of the visible and near infrared absorption and scattering coefficients of human skin.

PubMed

Khalil, Omar S; Yeh, Shu-Jen; Lowery, Michael G; Wu, Xiaomao; Hanna, Charles F; Kantor, Stanislaw; Jeng, Tzyy-Wen; Kanger, Johannes S; Bolt, Rene A; de Mul, Frits F

2003-04-01

We determine temperature effect on the absorption and reduced scattering coefficients (mu(a) and mu(s)(')) of human forearm skin. Optical and thermal simulation data suggest that mu( a) and mu(s)(') are determined within a temperature-controlled depth of approximately 2 mm. Cutaneous mu(s)(') change linearly with temperature. Change in mu(a) was complex and irreversible above body normal temperatures. Light penetration depth (delta) in skin increased on cooling, with considerable person-to-person variations. We attribute the effect of temperature on mu(s)(') to change in refractive index mismatch, and its effect on mu(a) to perfusion changes. The reversible temperature effect on mu (s)(' ) was maintained during more than 90 min. contact between skin and the measuring probe, where temperature was modulated between 38 and 22 degrees C for multiple cycles While temperature modulated mu(s)(' ) instantaneously and reversibly, mu(a) exhibited slower response time and consistent drift. There was a statistically significant upward drift in mu(a) and a mostly downward drift in mu( s)(') over the contact period. The drift in temperature-induced fractional change in mu(s)(') was less statistically significant than the drift in mu(s)('). Deltamu( s)(') values determined under temperature modulation conditions may have less nonspecific drift than mu(s)(') which may have significance for noninvasive determination of analytes in human tissue.

Determining the Sun's Deep Meridional Flow Speed Using Active Latitude Drift Rates Since 1874

NASA Astrophysics Data System (ADS)

Hathaway, D. H.; Wilson, R. M.

2005-05-01

Dynamo models that incorporate a deep meridional return flow indicate that this flow regulates both the period and the amplitude of the sunspot cycle (Dikpati & Charbonneau 1999, ApJ, 518, 508 and Charbonneau & Dikpati 2000, ApJ, 543, 1027). We recently examined the equatorward drift of the active latitudes (as given by the centroid of the sunspot areas in each hemisphere) and found evidence supporting this view (Hathaway et al. 2003, ApJ, 589, 665 and Hathaway et al. 2004, ApJ, 602, 543). In those studies we fit the equatorward drift in each hemisphere for each sunspot cycle with a simple parabola - giving us a drift rate and its deceleration for each hemisphere/cycle. Here we analyze the same data (the Royal Greenwich Observatory/USAF/NOAA daily active region summaries) to determine the drift rates in each hemisphere on a yearly basis (rotation-by-rotation measurements smoothed to remove high frequencies) and fit them with a simple model for the meridional flow that provides the meridional flow speed as a function of latitude and time from 1874 to 2005. These flow speeds can be used to test dynamo models -- some of which have predictive capabilities.

Gyrokinetic-water-bag modeling of low-frequency instabilities in a laboratory magnetized plasma column

NASA Astrophysics Data System (ADS)

Gravier, E.; Klein, R.; Morel, P.; Besse, N.; Bertrand, P.

2008-12-01

A new model is presented, named collisional-gyro-water-bag (CGWB), which describes the collisional drift waves and ion-temperature-gradient (ITG) instabilities in a plasma column. This model is based on the kinetic gyro-water-bag approach recently developed [P. Morel et al., Phys. Plasmas 14, 112109 (2007)] to investigate ion-temperature-gradient modes. In CGWB electron-neutral collisions have been introduced and are now taken into account. The model has been validated by comparing CGWB linear analysis with other models previously proposed and experimental results as well. Kinetic effects on collisional drift waves are investigated, resulting in a less effective growth rate, and the transition from collisional drift waves to ITG instability depending on the ion temperature gradient is studied.

A Hybrid Indoor Localization and Navigation System with Map Matching for Pedestrians Using Smartphones.

PubMed

Tian, Qinglin; Salcic, Zoran; Wang, Kevin I-Kai; Pan, Yun

2015-12-05

Pedestrian dead reckoning is a common technique applied in indoor inertial navigation systems that is able to provide accurate tracking performance within short distances. Sensor drift is the main bottleneck in extending the system to long-distance and long-term tracking. In this paper, a hybrid system integrating traditional pedestrian dead reckoning based on the use of inertial measurement units, short-range radio frequency systems and particle filter map matching is proposed. The system is a drift-free pedestrian navigation system where position error and sensor drift is regularly corrected and is able to provide long-term accurate and reliable tracking. Moreover, the whole system is implemented on a commercial off-the-shelf smartphone and achieves real-time positioning and tracking performance with satisfactory accuracy.

Spiky Fine Structure of Type III-like Radio Bursts in Absorption

NASA Astrophysics Data System (ADS)

Chernov, G. P.; Yan, Y. H.; Tan, C. M.; Chen, B.; Fu, Q. J.

2010-03-01

An uncommon fine structure in the radio spectrum consisting of bursts in absorption was observed with the Chinese Solar Broadband Radiospectrometer (SBRS) in the frequency range of 2.6 - 3.8 GHz during an X3.4/4B flare on 13 December 2006 in active region NOAA 10930 (S05W33). Usual fine structures in emission such as spikes, zebra stripes, and drifting fibers were observed at the peak of every new flare brightening. Within an hour at the decay phase of the event we observed bursts consisting of spikes in absorption, which pulsated periodically in frequency. Their instantaneous frequency bandwidths were found to be in the 75 MHz range. Moreover, in the strongest Type III-like bursts in absorption, the spikes showed stripes of the zebra-pattern (ZP) that drifted to higher frequencies. All spikes had the duration as short as down to the limit of the instrument resolution of ≈8 ms. The TRACE 195 Å images indicate that the magnetic reconnection at this moment occurred in the western edge of the flare loop arcade. Taking into account the presence of the reverse-drifting bursts in emission, in the course of the restoration of the magnetic structures in the corona, the acceleration of the beams of fast particles must have occurred both upward and downward at different heights. The upward beams will be captured by the magnetic trap, where the loss-cone distribution of fast particles (responsible for the emission of continuum and ZP) were formed. An additional injection of fast particles will fill the loss-cone later, breaking the loss-cone distribution. Therefore, the generation of continuum will be quenched at these moments, which was evidenced by the formation of bursts in absorption.

Long-Term Stability of the NIST Standard Ultrasonic Source.

PubMed

Fick, Steven E

2008-01-01

The National Institute of Standards and Technology (NIST) Standard Ultrasonic Source (SUS) is a system comprising a transducer capable of output power levels up to 1 W at multiple frequencies between 1 MHz and 30 MHz, and an electrical impedance-matching network that allows the system to be driven by a conventional 50 Ω rf (radio-frequency) source. It is designed to allow interlaboratory replication of ultrasonic power levels with high accuracy using inexpensive readily available ancillary equipment. The SUS was offered for sale for 14 years (1985 to 1999). Each system was furnished with data for the set of calibration points (combinations of power level and frequency) specified by the customer. Of the systems that had been ordered with some calibration points in common, three were returned more than once to NIST for recalibration. Another system retained at NIST has been recalibrated periodically since 1984. The collective data for these systems comprise 9 calibration points and 102 measurements spanning a 17 year interval ending in 2001, the last year NIST ultrasonic power measurement services were available to the public. These data have been analyzed to compare variations in output power with frequency, power level, and time elapsed since the first calibration. The results verify the claim, made in the instruction sheet furnished with every SUS, that "long-term drift, if any, in the calibration of NIST Standard Sources is insignificant compared to the uncertainties associated with a single measurement of ultrasonic power by any method available at NIST."

X-ray spectroscopy of warm and hot electron components in the CAPRICE source plasma at EIS testbench at GSI

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mascali, D., E-mail: davidmascali@lns.infn.it; Celona, L.; Castro, G.

2014-02-15

An experimental campaign aiming to detect X radiation emitted by the plasma of the CAPRICE source – operating at GSI, Darmstadt – has been carried out. Two different detectors (a SDD – Silicon Drift Detector and a HpGe – hyper-pure Germanium detector) have been used to characterize the warm (2–30 keV) and hot (30–500 keV) electrons in the plasma, collecting the emission intensity and the energy spectra for different pumping wave frequencies and then correlating them with the CSD of the extracted beam measured by means of a bending magnet. A plasma emissivity model has been used to extract themore » plasma density along the cone of sight of the SDD and HpGe detectors, which have been placed beyond specific collimators developed on purpose. Results show that the tuning of the pumping frequency considerably modifies the plasma density especially in the warm electron population domain, which is the component responsible for ionization processes: a strong variation of the plasma density near axis region has been detected. Potential correlations with the charge state distribution in the plasma are explored.« less

Searching for dilaton dark matter with atomic clocks

NASA Astrophysics Data System (ADS)

Arvanitaki, Asimina; Huang, Junwu; Van Tilburg, Ken

2015-01-01

We propose an experiment to search for ultralight scalar dark matter (DM) with dilatonic interactions. Such couplings can arise for the dilaton as well as for moduli and axion-like particles in the presence of C P violation. Ultralight dilaton DM acts as a background field that can cause tiny but coherent oscillations in Standard Model parameters such as the fine-structure constant and the proton-electron mass ratio. These minute variations can be detected through precise frequency comparisons of atomic clocks. Our experiment extends current searches for drifts in fundamental constants to the well-motivated high-frequency regime. Our proposed setups can probe scalars lighter than 1 0-15 eV with a discovery potential of dilatonic couplings as weak as 1 0-11 times the strength of gravity, improving current equivalence principle bounds by up to 8 orders of magnitude. We point out potential 1 04 sensitivity enhancements with future optical and nuclear clocks, as well as possible signatures in gravitational-wave detectors. Finally, we discuss cosmological constraints and astrophysical hints of ultralight scalar DM, and show they are complimentary to and compatible with the parameter range accessible to our proposed laboratory experiments.

Population demographics and genetic diversity in remnant and translocated populations of sea otters

USGS Publications Warehouse

Bodkin, James L.; Ballachey, Brenda E.; Cronin, M.A.; Scribner, K.T.

1999-01-01

The effects of small population size on genetic diversity and subsequent population recovery are theoretically predicted, but few empirical data are available to describe those relations. We use data from four remnant and three translocated sea otter (Enhydra lutris) populations to examine relations among magnitude and duration of minimum population size, population growth rates, and genetic variation. Metochondrial (mt)DNA haplotype diversity was correlated with the number of years at minimum population size (r = -0.741, p = 0.038) and minimum population size (r = 0.709, p = 0.054). We found no relation between population growth and haplotype diversity, altough growth was significantly greater in translocated than in remnant populations. Haplotype diversity in populations established from two sources was higher than in a population established from a single source and was higher than in the respective source populations. Haplotype frequencies in translocated populations of founding sizes of 4 and 28 differed from expected, indicating genetic drift and differential reproduction between source populations, whereas haplotype frequencies in a translocated population with a founding size of 150 did not. Relations between population demographics and genetic characteristics suggest that genetic sampling of source and translocated populations can provide valuable inferences about translocations.

Effects of finite electron temperature on gradient drift instabilities in partially magnetized plasmas

NASA Astrophysics Data System (ADS)

Lakhin, V. P.; Ilgisonis, V. I.; Smolyakov, A. I.; Sorokina, E. A.; Marusov, N. A.

2018-01-01

The gradient-drift instabilities of partially magnetized plasmas in plasma devices with crossed electric and magnetic fields are investigated in the framework of the two-fluid model with finite electron temperature in an inhomogeneous magnetic field. The finite electron Larmor radius (FLR) effects are also included via the gyroviscosity tensor taking into account the magnetic field gradient. This model correctly describes the electron dynamics for k⊥ρe>1 in the sense of Padé approximants (here, k⊥ and ρe are the wavenumber perpendicular to the magnetic field and the electron Larmor radius, respectively). The local dispersion relation for electrostatic plasma perturbations with the frequency in the range between the ion and electron cyclotron frequencies and propagating strictly perpendicular to the magnetic field is derived. The dispersion relation includes the effects of the equilibrium E ×B electron current, finite ion velocity, electron inertia, electron FLR, magnetic field gradients, and Debye length effects. The necessary and sufficient condition of stability is derived, and the stability boundary is found. It is shown that, in general, the electron inertia and FLR effects stabilize the short-wavelength perturbations. In some cases, such effects completely suppress the high-frequency short-wavelength modes so that only the long-wavelength low-frequency (with respect to the lower-hybrid frequency) modes remain unstable.

Characteristics of Electron Drift in an Ar-Hg Mixture

NASA Astrophysics Data System (ADS)

Golyatina, R. I.; Maiorov, S. A.

2018-04-01

The characteristics of electron drift in a mixture of argon with mercury vapor at reduced electric fields of E/ N = 1-100 Td are calculated and analyzed with allowance for inelastic collisions. It is shown that even a minor additive of mercury to argon at a level of a fraction of percent substantially affects the discharge parameters, in particular, the characteristics of inelastic processes. The influence of the concentration of mercury vapor in argon on the kinetic characteristics, such as the diffusion and mobility coefficients and ionization frequency, is investigated.

Synthetic Aperture Ladar Imaging and Atmospheric Turbulence

DTIC Science & Technology

2016-06-09

Cyanide (HCN). This keeps the absolute center frequency of the chirp from drifting which leads to undesirable phase drifts on the FMCW ladar...is known as the modulus of the complex coherence factor (, ′⃗⃗⃗⃗ ) = |Γ(, ′⃗⃗⃗⃗ )| |Γ(, )Γ (′⃗⃗⃗, ′⃗⃗⃗⃗ )| 1/2 Which is related...to the wavestructure function as D(, ′⃗⃗⃗⃗ ) = −2 ln μ(, ′⃗⃗⃗⃗ ). What is nice about using the modulus of the complex coherence factor is

Effects of Random Phase Shifts and Carrier Drift on the Resolution Properties of Linear Step Frequency Pulse Trains.

DTIC Science & Technology

1985-12-01

complex representation, the difference is 2 f a(t)-ga(t) ( t (3) ’- . where fa (t)=f(t)+jf(t), ga(t)-g(t)+jg(t), and f(t) and g(t) are the Hilbert ...percentage drift (PERCNT) represent reasonable values for".’. those variables Thf heart of both routines is a modified algorithm given by Dorn and Greenberg ...Application. N.Y.: Academic Press, 1967. -, - 4. Dorn, William S. and Greenberg , Herbert J. Mathematics and Compu- ting: with Fortran Programming. New York

The contributions of admixture and genetic drift to diversity among post-contact populations in the Americas.

PubMed

Koehl, Anthony J; Long, Jeffrey C

2018-02-01

We present a model that partitions Nei's minimum genetic distance between admixed populations into components of admixture and genetic drift. We applied this model to 17 admixed populations in the Americas to examine how admixture and drift have contributed to the patterns of genetic diversity. We analyzed 618 short tandem repeat loci in 949 individuals from 49 population samples. Thirty-two samples serve as proxies for continental ancestors. Seventeen samples represent admixed populations: (4) African-American and (13) Latin American. We partition genetic distance, and then calculate fixation indices and principal coordinates to interpret our results. A computer simulation confirms that our method correctly estimates drift and admixture components of genetic distance when the assumptions of the model are met. The partition of genetic distance shows that both admixture and genetic drift contribute to patterns of genetic diversity. The admixture component of genetic distance provides evidence for two distinct axes of continental ancestry. However, the genetic distances show that ancestry contributes to only one axis of genetic differentiation. The genetic distances among the 13 Latin American populations in this analysis show contributions from both differences in ancestry and differences in genetic drift. By contrast, the genetic distances among the four African American populations in this analysis owe mostly to genetic drift because these groups have similar fractions of European and African ancestry. The genetic structure of admixed populations in the Americas reflects more than admixture. We show that the history of serial founder effects constrains the impact of admixture on allele frequencies to a single dimension. Genetic drift in the admixed populations imposed a new level of genetic structure onto that created by admixture. © 2017 Wiley Periodicals, Inc.

Conserving genomic variability in large mammals: Effect of population fluctuations and variance in male reproductive success on variability in Yellowstone bison

Treesearch

Andres Perez-Figueroa; Rick L. Wallen; Tiago Antao; Jason A. Coombs; Michael K. Schwartz; P. J. White; Gordon Luikart

2012-01-01

Loss of genetic variation through genetic drift can reduce population viability. However, relatively little is known about loss of variation caused by the combination of fluctuating population size and variance in reproductive success in age structured populations. We built an individual-based computer simulation model to examine how actual culling and hunting...

Wind regime peculiarities in the lower thermosphere in the winter of 1983/84

NASA Technical Reports Server (NTRS)

Lysenko, I. A.; Makarov, N. A.; Portnyagin, Yu. I.; Petrov, B. I.; Greisiger, K. M.; Schminder, R.; Kurschner, D.

1987-01-01

Temporal variations of prevailing winds at 90 to 100 km obtained from measurements carried out in winter 1983 to 1984 at three sites in the USSR and two sites in East Germany are reported. These variations are compared with those of the thermal stratospheric regime. Measurements were carried out using the drifts D2 method (meteor wind radar) and the D1 method (ionospheric drifts). Temporal variations of zonal and meridional prevailing wind components for all the sites are given. Also presented are zonal wind data obtained using the partial reflection wind radar. Wind velocity values were obtained by averaging data recorded at between 105 and 91 km altitude. Wind velocity data averaged in such a way can be related to about the same height interval to which the data obtained by the meteor radar and ionospheric methods at other sites, i.e., the mean height of the meteor zone (about 95 km). The results presented show that there are significant fluctuations about the seasonal course of both zonal and meridional prevailing winds.

Variational principles for stochastic fluid dynamics

PubMed Central

Holm, Darryl D.

2015-01-01

This paper derives stochastic partial differential equations (SPDEs) for fluid dynamics from a stochastic variational principle (SVP). The paper proceeds by taking variations in the SVP to derive stochastic Stratonovich fluid equations; writing their Itô representation; and then investigating the properties of these stochastic fluid models in comparison with each other, and with the corresponding deterministic fluid models. The circulation properties of the stochastic Stratonovich fluid equations are found to closely mimic those of the deterministic ideal fluid models. As with deterministic ideal flows, motion along the stochastic Stratonovich paths also preserves the helicity of the vortex field lines in incompressible stochastic flows. However, these Stratonovich properties are not apparent in the equivalent Itô representation, because they are disguised by the quadratic covariation drift term arising in the Stratonovich to Itô transformation. This term is a geometric generalization of the quadratic covariation drift term already found for scalar densities in Stratonovich's famous 1966 paper. The paper also derives motion equations for two examples of stochastic geophysical fluid dynamics; namely, the Euler–Boussinesq and quasi-geostropic approximations. PMID:27547083

A preliminary estimate of geoid-induced variations in repeat orbit satellite altimeter observations

NASA Technical Reports Server (NTRS)

Brenner, Anita C.; Beckley, B. D.; Koblinsky, C. J.

1990-01-01

Altimeter satellites are often maintained in a repeating orbit to facilitate the separation of sea-height variations from the geoid. However, atmospheric drag and solar radiation pressure cause a satellite orbit to drift. For Geosat this drift causes the ground track to vary by + or - 1 km about the nominal repeat path. This misalignment leads to an error in the estimates of sea surface height variations because of the local slope in the geoid. This error has been estimated globally for the Geosat Exact Repeat Mission using a mean sea surface constructed from Geos 3 and Seasat altimeter data. Over most of the ocean the geoid gradient is small, and the repeat-track misalignment leads to errors of only 1 to 2 cm. However, in the vicinity of trenches, continental shelves, islands, and seamounts, errors can exceed 20 cm. The estimated error is compared with direct estimates from Geosat altimetry, and a strong correlation is found in the vicinity of the Tonga and Aleutian trenches. This correlation increases as the orbit error is reduced because of the increased signal-to-noise ratio.

Sensory trait variation in an echolocating bat suggests roles for both selection and plasticity

PubMed Central

2014-01-01

Background Across heterogeneous environments selection and gene flow interact to influence the rate and extent of adaptive trait evolution. This complex relationship is further influenced by the rarely considered role of phenotypic plasticity in the evolution of adaptive population variation. Plasticity can be adaptive if it promotes colonization and survival in novel environments and in doing so may increase the potential for future population differentiation via selection. Gene flow between selectively divergent environments may favour the evolution of phenotypic plasticity or conversely, plasticity itself may promote gene flow, leading to a pattern of trait differentiation in the presence of gene flow. Variation in sensory traits is particularly informative in testing the role of environment in trait and population differentiation. Here we test the hypothesis of ‘adaptive differentiation with minimal gene flow’ in resting echolocation frequencies (RF) of Cape horseshoe bats (Rhinolophus capensis) across a gradient of increasingly cluttered habitats. Results Our analysis reveals a geographically structured pattern of increasing RF from open to highly cluttered habitats in R. capensis; however genetic drift appears to be a minor player in the processes influencing this pattern. Although Bayesian analysis of population structure uncovered a number of spatially defined mitochondrial groups and coalescent methods revealed regional-scale gene flow, phylogenetic analysis of mitochondrial sequences did not correlate with RF differentiation. Instead, habitat discontinuities between biomes, and not genetic and geographic distances, best explained echolocation variation in this species. We argue that both selection for increased detection distance in relatively less cluttered habitats and adaptive phenotypic plasticity may have influenced the evolution of matched echolocation frequencies and habitats across different populations. Conclusions Our study reveals significant sensory trait differentiation in the presence of historical gene flow and suggests roles for both selection and plasticity in the evolution of echolocation variation in R. capensis. These results highlight the importance of population level analyses to i) illuminate the subtle interplay between selection, plasticity and gene flow in the evolution of adaptive traits and ii) demonstrate that evolutionary processes may act simultaneously and that their relative influence may vary across different environments. PMID:24674227

Sensory trait variation in an echolocating bat suggests roles for both selection and plasticity.

PubMed

Odendaal, Lizelle J; Jacobs, David S; Bishop, Jacqueline M

2014-03-27

Across heterogeneous environments selection and gene flow interact to influence the rate and extent of adaptive trait evolution. This complex relationship is further influenced by the rarely considered role of phenotypic plasticity in the evolution of adaptive population variation. Plasticity can be adaptive if it promotes colonization and survival in novel environments and in doing so may increase the potential for future population differentiation via selection. Gene flow between selectively divergent environments may favour the evolution of phenotypic plasticity or conversely, plasticity itself may promote gene flow, leading to a pattern of trait differentiation in the presence of gene flow. Variation in sensory traits is particularly informative in testing the role of environment in trait and population differentiation. Here we test the hypothesis of 'adaptive differentiation with minimal gene flow' in resting echolocation frequencies (RF) of Cape horseshoe bats (Rhinolophus capensis) across a gradient of increasingly cluttered habitats. Our analysis reveals a geographically structured pattern of increasing RF from open to highly cluttered habitats in R. capensis; however genetic drift appears to be a minor player in the processes influencing this pattern. Although Bayesian analysis of population structure uncovered a number of spatially defined mitochondrial groups and coalescent methods revealed regional-scale gene flow, phylogenetic analysis of mitochondrial sequences did not correlate with RF differentiation. Instead, habitat discontinuities between biomes, and not genetic and geographic distances, best explained echolocation variation in this species. We argue that both selection for increased detection distance in relatively less cluttered habitats and adaptive phenotypic plasticity may have influenced the evolution of matched echolocation frequencies and habitats across different populations. Our study reveals significant sensory trait differentiation in the presence of historical gene flow and suggests roles for both selection and plasticity in the evolution of echolocation variation in R. capensis. These results highlight the importance of population level analyses to i) illuminate the subtle interplay between selection, plasticity and gene flow in the evolution of adaptive traits and ii) demonstrate that evolutionary processes may act simultaneously and that their relative influence may vary across different environments.

Doubling the Spectrum of Time-Domain Induced Polarization: Removal of Harmonic Noise and Self-Potential Drift

NASA Astrophysics Data System (ADS)

Fiandaca, G.; Olsson, P. I.; Auken, E.; Larsen, J. J.; Maurya, P. K.; Dahlin, T.

2015-12-01

The extraction of spectral information in the inversion process of time-domain (TD) induced polarization (IP) data is changing the use of the IP method. Data interpretation is evolving from a qualitative description of the soil, able only to discriminate the presence of contrasts in chargeability parameters, towards a quantitative analysis of the investigated media, which allows soil-type characterization. Two major limitations restrict the extraction of the spectral information of TDIP data in the field: i) the difficulty of acquiring reliable early-time measurements, in the millisecond range and ii) the self-potential drift in the measured potentials distorting the shape of the late time IP decays, in the second range. For measuring at early-times, we developed a new method for removing the powerline noise contained in the data through a model-based approach, localizing the fundamental frequency of the powerline signal in the full-waveform IP recordings. By this, we cancel both the fundamental signal and its harmonics. This noise cancellation allows the use of earlier and narrower gates, down to a few milliseconds after the current turn-off. Even earlier gates can be measured but they will be inductively "contaminated" which we at present want to avoid. A proper removal of the self-potential drift present between the potential electrodes is essential for preserving the shape of the TD decays, especially for late times. Usually constant or linear drift-removal algorithms are used, but these algorithms fail in removing the background potentials due to the polarization of the electrodes previously used for current injection. We developed a drift-removal scheme that model the polarization effect and efficiently allows for preserving the shape of the IP decays. The removal of both the harmonic noise and self-potential drift allows for doubling the usable range of TDIP data to more than three decades in time (corresponding to three decays in frequency), and will significantly advance the science and the applicability of the IP method in exploration and environmental geophysics.

Separate channels for the analysis of the shape and the movement of moving visual stimulus.

PubMed

Tolhurst, D J

1973-06-01

1. The effects of temporal modulation on the properties of spatial frequency channels have been investigated using adaptation.2. Adapting to drifting sinusoidal gratings caused threshold elevation that was both spatial frequency and direction specific. Little systematic difference was found between the band widths of the elevation curves for drifting and stationary gratings.3. It was confirmed that adaptation fails to reveal channels at low spatial frequencies when stationary gratings are used. However, channels were revealed at frequencies at least as low as 0.66 c/deg when the test gratings were made to move. These channels are adapted only a little by stationary gratings, confirming their dependence on movement.4. The existence of movement-sensitive channels at low spatial frequencies explains the well known observation that temporal modulation greatly increases the sensitivity of the visual system to low spatial frequencies.5. Temporal modulation was effective at revealing these channels only when the flicker or movement of the test patterns was apparent to the observer; only at low spatial frequencies did patterns, modulated at low rates, actually appear to be temporarily modulated at threshold. At higher spatial frequencies, they were indistinguishable from stationary patterns until the contrast was some way above the detection threshold.6. It is suggested, therefore, that the movement-sensitive channels are responsible for signalling the occurrence of movement; the channels at higher spatial frequencies give no information about temporal changes. These two systems of channels are compared to the Y- and X-cells respectively of the cat.

Climate-driven ichthyoplankton drift model predicts growth of top predator young.

PubMed

Myksvoll, Mari S; Erikstad, Kjell E; Barrett, Robert T; Sandvik, Hanno; Vikebø, Frode

2013-01-01

Climate variability influences seabird population dynamics in several ways including access to prey near colonies during the critical chick-rearing period. This study addresses breeding success in a Barents Sea colony of common guillemots Uria aalge where trophic conditions vary according to changes in the northward transport of warm Atlantic Water. A drift model was used to simulate interannual variations in transport of cod Gadus morhua larvae along the Norwegian coast towards their nursery grounds in the Barents Sea. The results showed that the arrival of cod larvae from southern spawning grounds had a major effect on the size of common guillemot chicks at fledging. Furthermore, the fraction of larvae from the south was positively correlated to the inflow of Atlantic Water into the Barents Sea thus clearly demonstrating the mechanisms by which climate-driven bottom-up processes influence interannual variations in reproductive success in a marine top predator.

Climate-Driven Ichthyoplankton Drift Model Predicts Growth of Top Predator Young

PubMed Central

Myksvoll, Mari S.; Erikstad, Kjell E.; Barrett, Robert T.; Sandvik, Hanno; Vikebø, Frode

2013-01-01

Climate variability influences seabird population dynamics in several ways including access to prey near colonies during the critical chick-rearing period. This study addresses breeding success in a Barents Sea colony of common guillemots Uria aalge where trophic conditions vary according to changes in the northward transport of warm Atlantic Water. A drift model was used to simulate interannual variations in transport of cod Gadus morhua larvae along the Norwegian coast towards their nursery grounds in the Barents Sea. The results showed that the arrival of cod larvae from southern spawning grounds had a major effect on the size of common guillemot chicks at fledging. Furthermore, the fraction of larvae from the south was positively correlated to the inflow of Atlantic Water into the Barents Sea thus clearly demonstrating the mechanisms by which climate-driven bottom-up processes influence interannual variations in reproductive success in a marine top predator. PMID:24265761

Characterization of the Q-switched MOBLAS Laser Transmitter and Its Ranging Performance Relative to a PTM Q-switched System

NASA Technical Reports Server (NTRS)

Degnan, J. J., III; Zagwodski, T. W.

1979-01-01

A prototype Q-switched Nd:YAG laser transmitter intended for use in the NASA mobile laser ranging system was subjected to various tests of temporal pulse shape and stability, output energy and stability, beam divergence, and range bias errors. Peak to peak variations in the mean range were as large as 30 cm and drift rates of system bias with time as large as 6 mm per minute of operation were observed. The incorporation of a fast electro-optic cavity dump into the oscillator gave significantly improved results. Reevaluation of the ranging performance after modification showed a reduction in the peak to peak variation in the mean range to the 2 or 3 cm level and a drift rate of system time biases of less than 1 mm per minute of operation. A qualitative physical explanation for the superior performance of cavity dumped lasers is given.

The influence of gene flow and drift on genetic and phenotypic divergence in two species of Zosterops in Vanuatu

PubMed Central

Clegg, Sonya M.; Phillimore, Albert B.

2010-01-01

Colonization of an archipelago sets the stage for adaptive radiation. However, some archipelagos are home to spectacular radiations, while others have much lower levels of diversification. The amount of gene flow among allopatric populations is one factor proposed to contribute to this variation. In island colonizing birds, selection for reduced dispersal ability is predicted to produce changing patterns of regional population genetic structure as gene flow-dominated systems give way to drift-mediated divergence. If this transition is important in facilitating phenotypic divergence, levels of genetic and phenotypic divergence should be associated. We consider population genetic structure and phenotypic divergence among two co-distributed, congeneric (Genus: Zosterops) bird species inhabiting the Vanuatu archipelago. The more recent colonist, Z. lateralis, exhibits genetic patterns consistent with a strong influence of distance-mediated gene flow. However, complex patterns of asymmetrical gene flow indicate variation in dispersal ability or inclination among populations. The endemic species, Z. flavifrons, shows only a partial transition towards a drift-mediated system, despite a long evolutionary history on the archipelago. We find no strong evidence that gene flow constrains phenotypic divergence in either species, suggesting that levels of inter-island gene flow do not explain the absence of a radiation across this archipelago. PMID:20194170

Genetic drift and collective dispersal can result in chaotic genetic patchiness.

PubMed

Broquet, Thomas; Viard, Frédérique; Yearsley, Jonathan M

2013-06-01

Chaotic genetic patchiness denotes unexpected patterns of genetic differentiation that are observed at a fine scale and are not stable in time. These patterns have been described in marine species with free-living larvae, but are unexpected because they occur at a scale below the dispersal range of pelagic larvae. At the scale where most larvae are immigrants, theory predicts spatially homogeneous, temporally stable genetic variation. Empirical studies have suggested that genetic drift interacts with complex dispersal patterns to create chaotic genetic patchiness. Here we use a co-ancestry model and individual-based simulations to test this idea. We found that chaotic genetic patterns (qualified by global FST and spatio-temporal variation in FST's between pairs of samples) arise from the combined effects of (1) genetic drift created by the small local effective population sizes of the sessile phase and variance in contribution among breeding groups and (2) collective dispersal of related individuals in the larval phase. Simulations show that patchiness levels qualitatively comparable to empirical results can be produced by a combination of strong variance in reproductive success and mild collective dispersal. These results call for empirical studies of the effective number of breeders producing larval cohorts, and population genetics at the larval stage. © 2012 The Author(s). Evolution © 2012 The Society for the Study of Evolution.

Geostatistical analysis of effective vertical hydraulic conductivity and presence of confining layers in the Shallow Glacial Drift Aquifer, Oakland County, Michigan

USGS Publications Warehouse

Bissell, E.G.; Aichele, Stephen S.

2004-01-01

About 400,000 residents of Oakland County, Mich., rely on ground water for their primary drinking-water supply. More than 90 percent of these residents draw ground water from the shallow glacial drift aquifer. Understanding the vertical hydraulic conductivity of the shallow glacial drift aquifer is important both in identifying areas of ground-water recharge and in evaluating susceptibility to contamination. The geologic environment throughout much of the county, however, is poorly understood and heterogeneous, making conventional aquifer mapping techniques difficult. Geostatistical procedures are therefore used to describe the effective vertical hydraulic conductivity of the top 50 ft of the glacial deposits and to predict the probability of finding a potentially protective confining layer at a given location. The results presented synthesize the available well-log data; however, only about 40 percent of the explainable variation in the dataset is accounted for, making the results more qualitative than quantitative. Most of the variation in the effective vertical hydraulic conductivity cannot be explained with the well-log data currently available (as of 2004). Although the geologic environment is heterogeneous, the quality-assurance process indicated that more than half of the wells in the county’s Wellkey database (statewide database for monitoring drinking-water wells) had inconsistent identifications of lithology.

Gain drift compensation with no feedback-loop developed for the X-Ray Integral Field Unit/ATHENA readout chain

NASA Astrophysics Data System (ADS)

Prêle, Damien; Voisin, Fabrice; Beillimaz, Cyril; Chen, Si; Goldwurm, Andrea

2016-10-01

The focal plane of the X-Ray Integral Field Unit (X-IFU) instrument of the Advanced Telescope for High-Energy Astrophysics observatory is composed of 3840 microcalorimeters. These sensors, based on superconducting transition edge sensors (TES), are read out through a frequency multiplexer. A "base-band feedback" suppresses all the carriers of the multiplexed signal in the superconducting quantum interference devices input coil (cryogenic readout). However, the loop gain of this feedback is too small (less than 10 in the present baseline of the phase A mission) to strongly compensate the readout gain drifts. An onboard x-ray source is considered to calibrate the gain of the full instrument. However, in-flight calibration time must be minimized, which leads to a requirement on the gain stability larger than 10-4 over a long duration (between each calibration) to reach the challenging energy resolution goal of 2.5 eV at 6 keV of the X-IFU. A significant part of this gain is provided by a low-noise amplifier in the warm front-end electronics (WFEE). To reach such gain stability over more than a dozen minutes, this noncooled amplifier has to cope with the temperature and supply voltage variations. Moreover, mainly for noise reasons, a common large loop gain with feedback cannot be used. We propose a new amplifier topology using diodes as loads of a differential amplifier to provide a fixed voltage gain, independent of the temperature and of the bias fluctuations. This amplifier is designed using 350-nm SiGe BiCMOS technology and is part of an integrated circuit developed for the WFEE. Our simulations provide the expected gain and noise performances. Comparison with standard resistive loaded differential pair clearly shows the advantages of the proposed amplifier topology with a gain drift decreased by more than an order of magnitude. Performances of this diode loaded amplifier are discussed in the context of the X-IFU requirements.

A tale of two theories: How the adiabatic response and ULF waves affect relativistic electrons

NASA Astrophysics Data System (ADS)

Green, J. C.; Kivelson, M. G.

2001-11-01

Using data from the Comprehensive Energetic Particle and Pitch Angle Distribution (CEPPAD)-High Sensitivity Telescope (HIST) instrument on the Polar spacecraft and ground magnetometer data from the 210 meridian magnetometer chain, we test the ULF wave drift resonance theory proposed to explain relativistic electron phase space density enhancements. We begin by investigating changes in electron flux due to the ``Dst effect.'' The Dst effect refers to the adiabatic response of relativistic electrons to changes in the magnetic field characterized by the Dst index. The Dst effect, assuming no loss or addition of new electrons, produces reversible order of magnitude changes in relativistic electrons flux measured at fixed energy, but it cannot account for the flux enhancement that occurs in the recovery phase of most storms. Liouville's theorem states that phase space density expressed in terms of constant adiabatic invariants is unaffected by adiabatic field changes and thus is insensitive to the Dst effect. It is therefore useful to express flux measurements in terms of phase space densities at constant first, second and third adiabatic invariants. The phase space density is determined from the CEPPAD-HIST electron detector that measures differential directional flux of electrons from 0.7 to 9 MeV and the Tsyganenko 96 field model. The analysis is done for January to June 1997. The ULF wave drift resonance theory that we test proposes that relativistic electrons are accelerated by an m=2 toroidal or poloidal mode wave whose frequency equals the drift frequency of the electron. The theory is tested by comparing the relativistic electron phase space densities to wave power determined at three ground stations with L* values of 4.0, 5.7 and 6.2. Comparison of the wave data to the phase space densities shows that five out of nine storm events are consistent with the ULF wave drift resonance mechanism, three out of nine give ambiguous support to the model, and one event has high ULF wave power at the drift frequency of the electrons but no corresponding phase space density enhancement suggesting that ULF wave power alone is not sufficient to cause an electron response. Two explanations of the anomalous event are investigated including excessive loss of electrons to the magnetopause and wave duration.

Balancing selection and genetic drift create unusual patterns of MHCIIβ variation in Galápagos mockingbirds.

PubMed

Vlček, Jakub; Hoeck, Paquita E A; Keller, Lukas F; Wayhart, Jessica P; Dolinová, Iva; Štefka, Jan

2016-10-01

The extracellular subunit of the major histocompatibility complex MHCIIβ plays an important role in the recognition of pathogens and the initiation of the adaptive immune response of vertebrates. It is widely accepted that pathogen-mediated selection in combination with neutral micro-evolutionary forces (e.g. genetic drift) shape the diversity of MHCIIβ, but it has proved difficult to determine the relative effects of these forces. We evaluated the effect of genetic drift and balancing selection on MHCIIβ diversity in 12 small populations of Galápagos mockingbirds belonging to four different species, and one larger population of the Northern mockingbird from the continental USA. After genotyping MHCIIβ loci by high-throughput sequencing, we applied a correlational approach to explore the relationships between MHCIIβ diversity and population size by proxy of island size. As expected when drift predominates, we found a positive effect of population size on the number of MHCIIβ alleles present in a population. However, the number of MHCIIβ alleles per individual and number of supertypes were not correlated with population size. This discrepancy points to an interesting feature of MHCIIβ diversity dynamics: some levels of diversity might be shaped by genetic drift while others are independent and possibly maintained by balancing selection. © 2016 John Wiley & Sons Ltd.

Estimates of Lagrangian particle transport by wave groups: forward transport by Stokes drift and backward transport by the return flow

NASA Astrophysics Data System (ADS)

van den Bremer, Ton S.; Taylor, Paul H.

2014-11-01

Although the literature has examined Stokes drift, the net Lagrangian transport by particles due to of surface gravity waves, in great detail, the motion of fluid particles transported by surface gravity wave groups has received considerably less attention. In practice nevertheless, the wave field on the open sea often has a group-like structure. The motion of particles is different, as particles at sufficient depth are transported backwards by the Eulerian return current that was first described by Longuet-Higgins & Stewart (1962) and forms an inseparable counterpart of Stokes drift for wave groups ensuring the (irrotational) mass balance holds. We use WKB theory to study the variation of the Lagrangian transport by the return current with depth distinguishing two-dimensional seas, three-dimensional seas, infinite depth and finite depth. We then provide dimensional estimates of the net horizontal Lagrangian transport by the Stokes drift on the one hand and the return flow on the other hand for realistic sea states in all four cases. Finally we propose a simple scaling relationship for the transition depth: the depth above which Lagrangian particles are transported forwards by the Stokes drift and below which such particles are transported backwards by the return current.

Currents Induced by Injected Charge in Junction Detectors

PubMed Central

Gaubas, Eugenijus; Ceponis, Tomas; Kalesinskas, Vidas

2013-01-01

The problem of drifting charge-induced currents is considered in order to predict the pulsed operational characteristics in photo- and particle-detectors with a junction controlled active area. The direct analysis of the field changes induced by drifting charge in the abrupt junction devices with a plane-parallel geometry of finite area electrodes is presented. The problem is solved using the one-dimensional approach. The models of the formation of the induced pulsed currents have been analyzed for the regimes of partial and full depletion. The obtained solutions for the current density contain expressions of a velocity field dependence on the applied voltage, location of the injected surface charge domain and carrier capture parameters. The drift component of this current coincides with Ramo's expression. It has been illustrated, that the synchronous action of carrier drift, trapping, generation and diffusion can lead to a vast variety of possible current pulse waveforms. Experimental illustrations of the current pulse variations determined by either the rather small or large carrier density within the photo-injected charge domain are presented, based on a study of Si detectors. PMID:24036586

Population size is weakly related to quantitative genetic variation and trait differentiation in a stream fish.

PubMed

Wood, Jacquelyn L A; Tezel, Defne; Joyal, Destin; Fraser, Dylan J

2015-09-01

How population size influences quantitative genetic variation and differentiation among natural, fragmented populations remains unresolved. Small, isolated populations might occupy poor quality habitats and lose genetic variation more rapidly due to genetic drift than large populations. Genetic drift might furthermore overcome selection as population size decreases. Collectively, this might result in directional changes in additive genetic variation (VA ) and trait differentiation (QST ) from small to large population size. Alternatively, small populations might exhibit larger variation in VA and QST if habitat fragmentation increases variability in habitat types. We explored these alternatives by investigating VA and QST using nine fragmented populations of brook trout varying 50-fold in census size N (179-8416) and 10-fold in effective number of breeders, Nb (18-135). Across 15 traits, no evidence was found for consistent differences in VA and QST with population size and almost no evidence for increased variability of VA or QST estimates at small population size. This suggests that (i) small populations of some species may retain adaptive potential according to commonly adopted quantitative genetic measures and (ii) populations of varying sizes experience a variety of environmental conditions in nature, however extremely large studies are likely required before any firm conclusions can be made. © 2015 The Author(s). Evolution © 2015 The Society for the Study of Evolution.

Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection.

PubMed

Edwards, C T T; Holmes, E C; Pybus, O G; Wilson, D J; Viscidi, R P; Abrams, E J; Phillips, R E; Drummond, A J

2006-11-01

The evolution of the human immunodeficiency virus (HIV-1) during chronic infection involves the rapid, continuous turnover of genetic diversity. However, the role of natural selection, relative to random genetic drift, in governing this process is unclear. We tested a stochastic model of genetic drift using partial envelope sequences sampled longitudinally in 28 infected children. In each case the Bayesian posterior (empirical) distribution of coalescent genealogies was estimated using Markov chain Monte Carlo methods. Posterior predictive simulation was then used to generate a null distribution of genealogies assuming neutrality, with the null and empirical distributions compared using four genealogy-based summary statistics sensitive to nonneutral evolution. Because both null and empirical distributions were generated within a coalescent framework, we were able to explicitly account for the confounding influence of demography. From the distribution of corrected P-values across patients, we conclude that empirical genealogies are more asymmetric than expected if evolution is driven by mutation and genetic drift only, with an excess of low-frequency polymorphisms in the population. This indicates that although drift may still play an important role, natural selection has a strong influence on the evolution of HIV-1 envelope. A negative relationship between effective population size and substitution rate indicates that as the efficacy of selection increases, a smaller proportion of mutations approach fixation in the population. This suggests the presence of deleterious mutations. We therefore conclude that intrahost HIV-1 evolution in envelope is dominated by purifying selection against low-frequency deleterious mutations that do not reach fixation.

An analysis of the role of drift waves in equatorial spread F

NASA Technical Reports Server (NTRS)

Labelle, J.; Kelley, M. C.; Seyler, C. E.

1986-01-01

An account is given of results of rocket measurements of the wave number spectrum of equatorial spread F irregularities, with emphasis on wavelengths less than 100 m. The measurements were made from two sounding rockets launched from Peru as part of Project Condor. The Condor density fluctuation spectra display a break at a wavelength near 100 m, identical to that found in the PLUMEX experiment (Kelley et al., 1982). The Condor data also confirm a subrange in which the density and the wave potential obey the Boltzmann relation - a strong indication of the presence of low-frequency electrostatic waves with finite wavelength parallel to the magnetic field, perhaps low-frequency drift waves as proposed by Kelley et al. The Condor data are also consistent with the previous conjecture that drift waves only exist above 300 km altitude. To investigate the difference in spectra observed over two altitude ranges, the data must be fitted to a form for the power spectrum taken from Keskinen and Ossakow (1981). The fitted spectrum, along with empirically determined growth and dissipation rates, is used to calculate the energy pumped into the spectrum at long wavelengths as well as the energy dissipated at shorter wavelengths. It is found that the energy is balanced by classical collisional effects in the low-altitude case, but energy balance in the high-altitude case requires an enhanced dissipation of about 500 times that due to classical diffusion. The model is consistent with, but does not uniquely imply, an inverse cascade of drift wave turbulence in equatorial spread F.

Stokes drift.

PubMed

van den Bremer, T S; Breivik, Ø

2018-01-28

During its periodic motion, a particle floating at the free surface of a water wave experiences a net drift velocity in the direction of wave propagation, known as the Stokes drift (Stokes 1847 Trans. Camb. Philos. Soc. 8 , 441-455). More generally, the Stokes drift velocity is the difference between the average Lagrangian flow velocity of a fluid parcel and the average Eulerian flow velocity of the fluid. This paper reviews progress in fundamental and applied research on the induced mean flow associated with surface gravity waves since the first description of the Stokes drift, now 170 years ago. After briefly reviewing the fundamental physical processes, most of which have been established for decades, the review addresses progress in laboratory and field observations of the Stokes drift. Despite more than a century of experimental studies, laboratory studies of the mean circulation set up by waves in a laboratory flume remain somewhat contentious. In the field, rapid advances are expected due to increasingly small and cheap sensors and transmitters, making widespread use of small surface-following drifters possible. We also discuss remote sensing of the Stokes drift from high-frequency radar. Finally, the paper discusses the three main areas of application of the Stokes drift: in the coastal zone, in Eulerian models of the upper ocean layer and in the modelling of tracer transport, such as oil and plastic pollution. Future climate models will probably involve full coupling of ocean and atmosphere systems, in which the wave model provides consistent forcing on the ocean surface boundary layer. Together with the advent of new space-borne instruments that can measure surface Stokes drift, such models hold the promise of quantifying the impact of wave effects on the global atmosphere-ocean system and hopefully contribute to improved climate projections.This article is part of the theme issue 'Nonlinear water waves'. © 2017 The Author(s).

Stability of drift-cyclotron loss-cone waves in H-mode plasmas

DOE PAGES

Farmer, W. A.; Morales, G. J.

2016-05-24

The drift-cyclotron loss-cone mode was first studied in mirror machines. In such devices, particles with small pitch angles are not confined, creating a hole in the velocity distribution function that is a source of free energy and leads to micro-instabilities in the cyclotron-range of frequencies. In the edge region of tokamak devices operating under H-mode conditions, ion loss also occurs. In this case, gradient drift carries ions moving opposite to the plasma current preferentially into the divertor, creating a one-sided loss cone. A simple analysis shows that for the quiescent H-mode plasmas in DIII-D the critical gradient for instability ismore » exceeded within 2 cm of the separatrix, and the maximum growth rate at the separatrix is 3×10 7 s -1.« less

Space charge effect in spectrometers of ion mobility increment with cylindrical drift chamber.

PubMed

Elistratov, A A; Sherbakov, L A

2007-01-01

We have amplified the model for the drift of ions under a non-uniform high-frequency electric field by taking space charge effect into account. By this means, we have investigated the effect of space charge on the dynamics of a single type of ions in a spectrometer of ion mobility increment with a cylindrical drift chamber. The counteraction of the space charge effect and the focusing effect is investigated. The output ion current saturation caused by the effect of the space charge is observed. The shape of the ion peak taking into consideration the space charge effect has been obtained. We show that the effect of the space charge is sufficient for the relative ion density greater than 10 ppt by order of magnitude (for a cylindrical geometry spectrometer with typical parameters).

Simulation of electrostatic ion instabilities in the presence of parallel currents and transverse electric fields

NASA Technical Reports Server (NTRS)

Nishikawa, K.-I.; Ganguli, G.; Lee, Y. C.; Palmadesso, P. J.

1989-01-01

A spatially two-dimensional electrostatic PIC simulation code was used to study the stability of a plasma equilibrium characterized by a localized transverse dc electric field and a field-aligned drift for L is much less than Lx, where Lx is the simulation length in the x direction and L is the scale length associated with the dc electric field. It is found that the dc electric field and the field-aligned current can together play a synergistic role to enable the excitation of electrostatic waves even when the threshold values of the field aligned drift and the E x B drift are individually subcritical. The simulation results show that the growing ion waves are associated with small vortices in the linear stage, which evolve to the nonlinear stage dominated by larger vortices with lower frequencies.

Sea ice studies in the Spitsbergen-Greenland area

NASA Technical Reports Server (NTRS)

Vinje, T. E. (Principal Investigator)

1976-01-01

The author has identified the following significant results. Data showed unexpected great variations in the drift velocity of the ice in the Fram Strait. Land map improvements were achieved by LANDSAT in the eastern part of the Svalbard archipelago.

The effect of gene interactions on the long-term response to selection.

PubMed

Paixão, Tiago; Barton, Nicholas H

2016-04-19

The role of gene interactions in the evolutionary process has long been controversial. Although some argue that they are not of importance, because most variation is additive, others claim that their effect in the long term can be substantial. Here, we focus on the long-term effects of genetic interactions under directional selection assuming no mutation or dominance, and that epistasis is symmetrical overall. We ask by how much the mean of a complex trait can be increased by selection and analyze two extreme regimes, in which either drift or selection dominate the dynamics of allele frequencies. In both scenarios, epistatic interactions affect the long-term response to selection by modulating the additive genetic variance. When drift dominates, we extend Robertson's [Robertson A (1960)Proc R Soc Lond B Biol Sci153(951):234-249] argument to show that, for any form of epistasis, the total response of a haploid population is proportional to the initial total genotypic variance. In contrast, the total response of a diploid population is increased by epistasis, for a given initial genotypic variance. When selection dominates, we show that the total selection response can only be increased by epistasis when some initially deleterious alleles become favored as the genetic background changes. We find a simple approximation for this effect and show that, in this regime, it is the structure of the genotype-phenotype map that matters and not the variance components of the population.

Design and Industrial Production of Frequency Standards in the USSR

DTIC Science & Technology

1990-12-01

VNIIFTRI ), the measurement data, taken in January-May interval of 1990, the frequency drift of four CHI-80 instruments was less than 1 x 10-l6 per day13...hydrogen keeper specifications received by VNIIFTRI . The frequency reproducibility is 5 x 10-l4 for the measurement interval up to 16 hours[16]. At...in hydrogen maser in new materials Proc. VNIIFTRI Issledovarliya v oblasty izmereny vremeny i chastoty. Moscow, 1978, v.37(67), P.81-85 2. S.B

A hydrogen maser with cavity auto-tuner for timekeeping

NASA Technical Reports Server (NTRS)

Lin, C. F.; He, J. W.; Zhai, Z. C.

1992-01-01

A hydrogen maser frequency standard for timekeeping was worked on at the Shanghai Observatory. The maser employs a fast cavity auto-tuner, which can detect and compensate the frequency drift of the high-Q resonant cavity with a short time constant by means of a signal injection method, so that the long term frequency stability of the maser standard is greatly improved. The cavity auto-tuning system and some maser data obtained from the atomic time comparison are described.

Energetic-particle-induced geodesic acoustic mode.

PubMed

Fu, G Y

2008-10-31

A new energetic particle-induced geodesic acoustic mode (EGAM) is shown to exist. The mode frequency and mode structure are determined nonperturbatively by energetic particle kinetic effects. In particular the EGAM frequency is found to be substantially lower than the standard GAM frequency. The radial mode width is determined by the energetic particle drift orbit width and can be fairly large for high energetic particle pressure and large safety factor. These results are consistent with the recent experimental observation of the beam-driven n=0 mode in DIII-D.

Ground control system for the midcourse space experiment UTC clock

NASA Technical Reports Server (NTRS)

Dragonette, Richard

1994-01-01

One goal of the Midcourse Space Experiment (MSX) spacecraft Operations Planning Center is to maintain the onboard satellite UTC clock (UTC(MSX)) to within 1 millisecond of UTC(APL) (the program requirement is 10 msec). The UTC(MSX) clock employs as its time base an APL built 5 MHz quartz oscillator, which is expected to have frequency instabilities (aging rate + drift rate + frequency offset) that will cause the clock to drift approximately two to ten milliseconds per day. The UTC(MSX) clock can be advanced or retarded by the APL MSX satellite ground control center by integer multiples of 1 millisecond. The MSX Operations Planning Center is developing software which records the drift of UTC(MSX) relative to UTC(APL) and which schedules the time of day and magnitude of UTC(MSX) clock updates up to 48 hours in advance. Because of the manner in which MSX spacecraft activities are scheduled, MSX clock updates are planned 24 to 48 hours in advance, and stored in the satellite's computer controller for later execution. Data will be collected on the drift of UTC(MSX) relative to UTC(APL) over a three to five day period. Approximately six times per day, the time offset between UTC(MSX) and UTC(APL) will be measured by APL with a resolution of less than 100 microseconds. From this data a second order analytical model of the clock's drift will be derived. This model will be used to extrapolate the offset of the MSX clock in time from the present to 48 hours in the future. MSX clock updates will be placed on the spacecraft's daily schedule whenever the predicted clock offset exceeds 0.5 milliseconds. The paper includes a discussion of how the empirical model of the MSX clock is derived from satellite telemetry data, as well as the algorithm used to schedule MSX clock updates based on the model.

Genetic characterization of Greek population isolates reveals strong genetic drift at missense and trait-associated variants

PubMed Central

Panoutsopoulou, Kalliope; Hatzikotoulas, Konstantinos; Xifara, Dionysia Kiara; Colonna, Vincenza; Farmaki, Aliki-Eleni; Ritchie, Graham R. S.; Southam, Lorraine; Gilly, Arthur; Tachmazidou, Ioanna; Fatumo, Segun; Matchan, Angela; Rayner, Nigel W.; Ntalla, Ioanna; Mezzavilla, Massimo; Chen, Yuan; Kiagiadaki, Chrysoula; Zengini, Eleni; Mamakou, Vasiliki; Athanasiadis, Antonis; Giannakopoulou, Margarita; Kariakli, Vassiliki-Eirini; Nsubuga, Rebecca N.; Karabarinde, Alex; Sandhu, Manjinder; McVean, Gil; Tyler-Smith, Chris; Tsafantakis, Emmanouil; Karaleftheri, Maria; Xue, Yali; Dedoussis, George; Zeggini, Eleftheria

2014-01-01

Isolated populations are emerging as a powerful study design in the search for low-frequency and rare variant associations with complex phenotypes. Here we genotype 2,296 samples from two isolated Greek populations, the Pomak villages (HELIC-Pomak) in the North of Greece and the Mylopotamos villages (HELIC-MANOLIS) in Crete. We compare their genomic characteristics to the general Greek population and establish them as genetic isolates. In the MANOLIS cohort, we observe an enrichment of missense variants among the variants that have drifted up in frequency by more than fivefold. In the Pomak cohort, we find novel associations at variants on chr11p15.4 showing large allele frequency increases (from 0.2% in the general Greek population to 4.6% in the isolate) with haematological traits, for example, with mean corpuscular volume (rs7116019, P=2.3 × 10−26). We replicate this association in a second set of Pomak samples (combined P=2.0 × 10−36). We demonstrate significant power gains in detecting medical trait associations. PMID:25373335

DOE Office of Scientific and Technical Information (OSTI.GOV)

Niknam, A. R., E-mail: a-niknam@sbu.ac.ir; Rastbood, E.; Khorashadizadeh, S. M.

The dielectric permittivity tensor of a magnetoactive current-driven plasma is obtained by employing the kinetic theory based on the Vlasov equation and Lorentz transformation formulas with an emphasize on the q-nonextensive statistics. By deriving the q-generalized dispersion relation of the low frequency modes in this plasma system, the possibility and properties of filamentation and ion acoustic instabilities are then studied. It is shown that the occurrence and the growth rate of these instabilities depend strongly on the nonextensive parameters, external magnetic field strength, and drift velocity. It is observed that the growth rate of ion acoustic instability is affected bymore » the magnetic field strength much more than that of the filamentation instability in the low frequency range. The external magnetic field facilitates the development of the ion-acoustic instability. It is also shown that the filamentation is the dominant instability only for the high value of drift velocity.« less

Microwave fields driven domain wall motions in antiferromagnetic nanowires

NASA Astrophysics Data System (ADS)

Chen, Z. Y.; Yan, Z. R.; Zhang, Y. L.; Qin, M. H.; Fan, Z.; Lu, X. B.; Gao, X. S.; Liu, J.-M.

2018-06-01

In this work, we study the microwave field driven domain wall (DW) motion in an antiferromagnetic nanowire, using the numerical calculations based on a classical Heisenberg spin model with the biaxial magnetic anisotropy. We show that a proper combination of a static magnetic field plus an oscillating field perpendicular to the nanowire axis is sufficient to drive the DW propagation along the nanowire. More importantly, the drift velocity at the resonance frequency is comparable to that induced by temperature gradients, suggesting that microwave field can be a very promising tool to control DW motions in antiferromagnetic nanostructures. The dependences of resonance frequency and drift velocity on the static and oscillating fields, the axial anisotropy, and the damping constant are discussed in details. Furthermore, the optimal orientations of the field are also numerically determined and explained. This work provides useful information for the spin dynamics in antiferromagnetic nanostructures for spintronics applications.

Timekeeping for the Space Technology 5 (ST-5) Mission

NASA Technical Reports Server (NTRS)

Raphael, Dave; Luers, Phil; Sank, Victor; Jackson, George

2002-01-01

Space Technology 5, or better known as ST-5, is a space technology development mission in the New Millennium Program (NMP) and NASA s first experiment in the design of miniaturized satellite constellations. The mission will design, integrate and launch multiple spacecraft into an orbit high above the Earth s protective magnetic field known as the magnetosphere. Each spacecraft incorporates innovative technology and constellation concepts which will be instrumental in future space science missions. A total of three ST-5 spacecraft will be launched as secondary payloads into a highly elliptical geo-synchronous transfer orbit, and will operate as a 3-element constellation for a minimum duration of 90 days. In order to correlate the time of science measurements with orbit position relative to the Earth, orbit position in space (with respect to other objects in space) and/or with events measured on Earth or other spacecraft, accurate knowledge of spacecraft and ground time is needed. Ground time as used in the USA (known as Universal Time Coordinated or UTC) is maintained by the U.S. Naval Observatory. Spacecraft time is maintained onboard within the Command and Data Handling (C&DH) system. The science requirements for ST-5 are that spacecraft time and ground time be correlatable to each other, with some degree of accuracy. Accurate knowledge of UTC time on a spacecraft is required so that science measurements can be correlated with orbit position relative to the Earth, orbit position in space and with events measured on Earth or other spacecraft. The most crucial parameter is not the clock oscillator frequency, but more importantly, how the clock oscillator frequency varies with time or temperature (clock oscillator drift). Even with an incorrect clock oscillator frequency, if there were no drift, the frequency could be assessed by comparing the spacecraft clock to a ground clock during a few correlation events. Once the frequency is accurately known, it is easy enough to make a regular adjustment to the spacecraft clock or to calculate the correct ground time for a given spacecraft clock time. The oscillator frequency, however, is temperature dependent, drifts with age and is affected by radiation; hence, repeated correlation measurements are required.

Damage Detection of CFRP Plates by Full-Spectral Analysis of a Fibre Bragg Grating Sensor Signal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mizutani, Yoshihiro; Solid and Structures Engineering Laboratory, Department of Mechanical Sciences and Engineering, Tokyo Institute of Technology, Japan, 2-12-1-I1-70, Ookayama, Meguro-ku, Tokyo 152-8552; Groves, Roger M.

2010-05-28

This paper describes the measurement of average strain, strain distribution and vibration of cantilever beam made of Carbon Fiber Reinforced Plastics (CFRP), using a single Fibre Bragg Grating (FBG) sensor mounted on the beam surface. Average strain is determined from the displacement of the peak wavelength of reflected light from the FBG sensor. Unstrained reference FBG sensors were used to compensate for temperature drift and the photoelastic coefficient (P{sub e}), which was used to calculate the gauge factor. Measured strains agree with those measured by a resistance foil strain gauge attached to the sample. Stress distributions are measured by monitoringmore » the variation in the full width half maximum (FWHM) values of the reflected spectrum, using a proposed optical analytical model, described in the paper. FWHM values were measured for both the cantilever test beam and a for a reference beam, loaded using a four-point bending rig. The trend of the stress distribution for the test beam matches with our analytical model, however with a relatively large noise present in the experimentally determined data. The vibration of cantilever beam was measured by temporal analysis of the peak reflection wavelength. This technique is very stable as measurements are not affected by variations in the signal amplitude. Finally an application of FBG sensors for damage detection of CFRP plates is demonstrated, by measuring the average strain and natural frequency. With small defects of different sizes applied to the CFRP plate, average strains were seen to increase with damage size and the natural frequency decreased with damage size.« less

Naturally occurring deletions of hunchback binding sites in the even-skipped stripe 3+7 enhancer.

PubMed

Palsson, Arnar; Wesolowska, Natalia; Reynisdóttir, Sigrún; Ludwig, Michael Z; Kreitman, Martin

2014-01-01

Changes in regulatory DNA contribute to phenotypic differences within and between taxa. Comparative studies show that many transcription factor binding sites (TFBS) are conserved between species whereas functional studies reveal that some mutations segregating within species alter TFBS function. Consistently, in this analysis of 13 regulatory elements in Drosophila melanogaster populations, single base and insertion/deletion polymorphism are rare in characterized regulatory elements. Experimentally defined TFBS are nearly devoid of segregating mutations and, as has been shown before, are quite conserved. For instance 8 of 11 Hunchback binding sites in the stripe 3+7 enhancer of even-skipped are conserved between D. melanogaster and Drosophila virilis. Oddly, we found a 72 bp deletion that removes one of these binding sites (Hb8), segregating within D. melanogaster. Furthermore, a 45 bp deletion polymorphism in the spacer between the stripe 3+7 and stripe 2 enhancers, removes another predicted Hunchback site. These two deletions are separated by ∼250 bp, sit on distinct haplotypes, and segregate at appreciable frequency. The Hb8Δ is at 5 to 35% frequency in the new world, but also shows cosmopolitan distribution. There is depletion of sequence variation on the Hb8Δ-carrying haplotype. Quantitative genetic tests indicate that Hb8Δ affects developmental time, but not viability of offspring. The Eve expression pattern differs between inbred lines, but the stripe 3 and 7 boundaries seem unaffected by Hb8Δ. The data reveal segregating variation in regulatory elements, which may reflect evolutionary turnover of characterized TFBS due to drift or co-evolution.

Out of Africa: modern human origins special feature: explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa.

PubMed

DeGiorgio, Michael; Jakobsson, Mattias; Rosenberg, Noah A

2009-09-22

Studies of worldwide human variation have discovered three trends in summary statistics as a function of increasing geographic distance from East Africa: a decrease in heterozygosity, an increase in linkage disequilibrium (LD), and a decrease in the slope of the ancestral allele frequency spectrum. Forward simulations of unlinked loci have shown that the decline in heterozygosity can be described by a serial founder model, in which populations migrate outward from Africa through a process where each of a series of populations is formed from a subset of the previous population in the outward expansion. Here, we extend this approach by developing a retrospective coalescent-based serial founder model that incorporates linked loci. Our model both recovers the observed decline in heterozygosity with increasing distance from Africa and produces the patterns observed in LD and the ancestral allele frequency spectrum. Surprisingly, although migration between neighboring populations and limited admixture between modern and archaic humans can be accommodated in the model while continuing to explain the three trends, a competing model in which a wave of outward modern human migration expands into a series of preexisting archaic populations produces nearly opposite patterns to those observed in the data. We conclude by developing a simpler model to illustrate that the feature that permits the serial founder model but not the archaic persistence model to explain the three trends observed with increasing distance from Africa is its incorporation of a cumulative effect of genetic drift as humans colonized the world.

Changes in composition of cuticular biochemicals of the facultatively polygynous ant Petalomyrmex phylax during range expansion in Cameroon with respect to social, spatial and genetic variation.

PubMed

Dalecky, Ambroise; Renucci, Marielle; Tirard, Alain; Debout, Gabriel; Roux, Maurice; Kjellberg, Finn; Provost, Erick

2007-09-01

In social insects, biochemicals found at the surface of the cuticle are involved in the recognition process and in protection against desiccation and pathogens. However, the relative contribution of evolutionary forces in shaping diversity of these biochemicals remains largely unresolved in ants. We determined the composition of epicuticular biochemicals for workers sampled in 12 populations of the ant Petalomyrmex phylax from Cameroon. Genetic variation at 12 microsatellite markers was used to infer population history and to provide null expectations under the neutrality hypothesis. Genetic data suggest a recent southward range expansion of this ant species. Furthermore, there is a decline southward in the numbers of queens present in mature colonies. Here, we contrast the pattern of biochemical variation against genetic, social and spatial parameters. We thus provide the first estimates of the relative contribution of neutral and selective processes on variation of ant cuticular profile. Populations in migration-drift disequilibrium showed reduction of within-population variation for genetic markers as well as for cuticular profiles. In these populations, the cuticular profile became biased towards a limited number of high molecular weight molecules. Within- and among-population biochemical variation was explained by both genetic and social variation and by the spatial distribution of populations. We therefore propose that during range expansion of P. phylax, the composition of epicuticular compounds has been affected by a combination of neutral processes - genetic drift and spatially limited dispersal - and spatially varying selection, social organization and environmental effects.

SU-D-207A-07: The Effects of Inter-Cycle Respiratory Motion Variation On Dose Accumulation in Single Fraction MR-Guided SBRT Treatment of Renal Cell Carcinoma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stemkens, B; Glitzner, M; Kontaxis, C

Purpose: To assess the dose deposition in simulated single-fraction MR-Linac treatments of renal cell carcinoma, when inter-cycle respiratory motion variation is taken into account using online MRI. Methods: Three motion characterization methods, with increasing complexity, were compared to evaluate the effect of inter-cycle motion variation and drifts on the accumulated dose for an SBRT kidney MR-Linac treatment: 1) STATIC, in which static anatomy was assumed, 2) AVG-RESP, in which 4D-MRI phase-volumes were time-weighted, based on the respiratory phase and 3) PCA, in which 3D volumes were generated using a PCA-model, enabling the detection of inter-cycle variations and drifts. An experimentalmore » ITV-based kidney treatment was simulated in a 1.5T magnetic field on three volunteer datasets. For each volunteer a retrospectively sorted 4D-MRI (ten respiratory phases) and fast 2D cine-MR images (temporal resolution = 476ms) were acquired to simulate MR-imaging during radiation. For each method, the high spatio-temporal resolution 3D volumes were non-rigidly registered to obtain deformation vector fields (DVFs). Using the DVFs, pseudo-CTs (generated from the 4D-MRI) were deformed and the dose was accumulated for the entire treatment. The accuracies of all methods were independently determined using an additional, orthogonal 2D-MRI slice. Results: Motion was most accurately estimated using the PCA method, which correctly estimated drifts and inter-cycle variations (RMSE=3.2, 2.2, 1.1mm on average for STATIC, AVG-RESP and PCA, compared to the 2DMRI slice). Dose-volume parameters on the ITV showed moderate changes (D99=35.2, 32.5, 33.8Gy for STATIC, AVG-RESP and PCA). AVG-RESP showed distinct hot/cold spots outside the ITV margin, which were more distributed for the PCA scenario, since inter-cycle variations were not modeled by the AVG-RESP method. Conclusion: Dose differences were observed when inter-cycle variations were taken into account. The increased inter-cycle randomness in motion as captured by the PCA model mitigates the local (erroneous) hotspots estimated by the AVG-RESP method.« less

Polarization variations in installed fibers and their influence on quantum key distribution systems.

PubMed

Ding, Yu-Yang; Chen, Hua; Wang, Shuang; He, De-Yong; Yin, Zhen-Qiang; Chen, Wei; Zhou, Zheng; Guo, Guang-Can; Han, Zheng-Fu

2017-10-30

Polarization variations in the installed fibers are complex and volatile, and would severely affect the performances of polarization-sensitive quantum key distribution (QKD) systems. Based on the recorded data about polarization variations of different installed fibers, we establish an analytical methodology to quantitatively evaluate the influence of polarization variations on polarization-sensitive QKD systems. Using the increased quantum bit error rate induced by polarization variations as a key criteria, we propose two parameters - polarization drift time and required tracking speed - to characterize polarization variations. For field buried and aerial fibers with different length, we quantitatively evaluate the influence of polarization variations, and also provide requirements and suggestions for polarization basis alignment modules of QKD systems deployed in different kind of fibers.

Drift-Free Position Estimation of Periodic or Quasi-Periodic Motion Using Inertial Sensors

PubMed Central

Latt, Win Tun; Veluvolu, Kalyana Chakravarthy; Ang, Wei Tech

2011-01-01

Position sensing with inertial sensors such as accelerometers and gyroscopes usually requires other aided sensors or prior knowledge of motion characteristics to remove position drift resulting from integration of acceleration or velocity so as to obtain accurate position estimation. A method based on analytical integration has previously been developed to obtain accurate position estimate of periodic or quasi-periodic motion from inertial sensors using prior knowledge of the motion but without using aided sensors. In this paper, a new method is proposed which employs linear filtering stage coupled with adaptive filtering stage to remove drift and attenuation. The prior knowledge of the motion the proposed method requires is only approximate band of frequencies of the motion. Existing adaptive filtering methods based on Fourier series such as weighted-frequency Fourier linear combiner (WFLC), and band-limited multiple Fourier linear combiner (BMFLC) are modified to combine with the proposed method. To validate and compare the performance of the proposed method with the method based on analytical integration, simulation study is performed using periodic signals as well as real physiological tremor data, and real-time experiments are conducted using an ADXL-203 accelerometer. Results demonstrate that the performance of the proposed method outperforms the existing analytical integration method. PMID:22163935

[An Improved Cubic Spline Interpolation Method for Removing Electrocardiogram Baseline Drift].

PubMed

Wang, Xiangkui; Tang, Wenpu; Zhang, Lai; Wu, Minghu

2016-04-01

The selection of fiducial points has an important effect on electrocardiogram(ECG)denoise with cubic spline interpolation.An improved cubic spline interpolation algorithm for suppressing ECG baseline drift is presented in this paper.Firstly the first order derivative of original ECG signal is calculated,and the maximum and minimum points of each beat are obtained,which are treated as the position of fiducial points.And then the original ECG is fed into a high pass filter with 1.5Hz cutoff frequency.The difference between the original and the filtered ECG at the fiducial points is taken as the amplitude of the fiducial points.Then cubic spline interpolation curve fitting is used to the fiducial points,and the fitting curve is the baseline drift curve.For the two simulated case test,the correlation coefficients between the fitting curve by the presented algorithm and the simulated curve were increased by 0.242and0.13 compared with that from traditional cubic spline interpolation algorithm.And for the case of clinical baseline drift data,the average correlation coefficient from the presented algorithm achieved 0.972.

Hydrodynamic phonon drift and second sound in a (20,20) single-wall carbon nanotube

DOE PAGES

Lee, Sangyeop; Lindsay, Lucas

2017-05-18

Here, two hydrodynamic features of phonon transport, phonon drift and second sound, in a (20,20) single wall carbon nanotube (SWCNT) are discussed using lattice dynamics calculations employing an optimized Tersoff potential for atomic interactions. We formally derive a formula for the contribution of drift motion of phonons to total heat flux at steady state. It is found that the drift motion of phonons carry more than 70% and 90% of heat at 300 K and 100 K, respectively, indicating that phonon flow can be reasonably approximated as hydrodynamic if the SWCNT is long enough to avoid ballistic phonon transport. Themore » dispersion relation of second sound is derived from the Peierls-Boltzmann transport equation with Callaway s scattering model and quantifies the speed of second sound and its relaxation. The speed of second sound is around 4000 m/s in a (20,20) SWCNT and the second sound can propagate more than 10 m in an isotopically pure (20,20) SWCNT for frequency around 1 GHz at 100 K.« less

Hydrodynamic phonon drift and second sound in a (20,20) single-wall carbon nanotube

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Sangyeop; Lindsay, Lucas

Here, two hydrodynamic features of phonon transport, phonon drift and second sound, in a (20,20) single wall carbon nanotube (SWCNT) are discussed using lattice dynamics calculations employing an optimized Tersoff potential for atomic interactions. We formally derive a formula for the contribution of drift motion of phonons to total heat flux at steady state. It is found that the drift motion of phonons carry more than 70% and 90% of heat at 300 K and 100 K, respectively, indicating that phonon flow can be reasonably approximated as hydrodynamic if the SWCNT is long enough to avoid ballistic phonon transport. Themore » dispersion relation of second sound is derived from the Peierls-Boltzmann transport equation with Callaway s scattering model and quantifies the speed of second sound and its relaxation. The speed of second sound is around 4000 m/s in a (20,20) SWCNT and the second sound can propagate more than 10 m in an isotopically pure (20,20) SWCNT for frequency around 1 GHz at 100 K.« less

SU-F-T-279: Impact of Beam Energy Drifts On IMRT Delivery Accuracy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goddu, S; Kamal, G; Herman, A

Purpose: According to TG-40 percent-depth-dose (PDD) tolerance is ±2% but TG-142 is ±1%. Now the question is, which one is relevant in IMRT era? The primary objective of this study is to evaluate dosimetric impact of beam-energy-drifts on IMRT-delivery. Methods: Beam-energy drifts were simulated by adjusting Linac’s bending-magnet-current (BMC) followed by tuning the pulse-forming network and adjusting gun-current. PDD change of −0.6% and +1.2% were tested. Planar-dosimetry measurements were performed using an ionization-chamber-array in solid-water phantoms. Study includes 10-head-and-neck and 3-breast cancer patients. en-face beam-deliveries were also tested at 1.3cm and 5.3cm depths. Composite and single-field dose-distributions were compared againstmore » the plans to determine %Gamma pass-rates (%GPRs). For plan dose comparisons, changes in %Gamma pass-rates (cPGPRs) were computed/reported to exclude the differences between dose-computation and delivery. Dose distributions of the drifted-energies were compared against their baseline measurements to determine the% GPRs. A Gamma criteria of 3%/3mm was considered for plan-dose comparisons while 3%/1mm used for measured dose intercomparisons. Results: For composite-dose delivery, average cPGPRs were 0.41%±2.48% and −2.54%±3.65% for low-energy (LE) and high-energy (HE) drifts, respectively. For measured dose inter-comparisons, the average%GPRs were 98.4%±2.2% (LE-drift) and 95.8%±4.0 (HE-drift). The average %GPR of 92.6%±4.3% was noted for the worst-case scenario comparing LE-drift to HE-drift. All en-face beams at 5.3 cm depth have cPGPRs within ±4% of the baseline-energy measurements. However, greater variations were noted for 1.3cm depth. Average %GPRs for drifted energies were >99% at 5.3cm and >97% at 1.3cm depths. However, for the worst-case scenario (LE-drift to HE-drift) these numbers dropped to 95.2% at 5.3cm and 93.1% at 1.3cm depths. Conclusion: The dosimetric impact of beam-energy drifts was found to be within clinically acceptable tolerance. However, this study includes a single energy with limited range of PDD change. Further studies are on going and the results will be presented. Received funding from Varian Medical Systems, Palo Alto, CA.« less

Energy Conversion Mechanism for Electron Perpendicular Energy in High Guide-Field Reconnection

NASA Astrophysics Data System (ADS)

Guo, Xuehan; Horiuchi, Ritoku; Kaminou, Yasuhiro; Cheng, Frank; Ono, Yasushi

2016-10-01

The energy conversion mechanism for electron perpendicular energy, both the thermal and the kinetic energy, is investigated by means of two-dimensional, full-particle simulations in an open system. It is shown that electron perpendicular heating is mainly due to the breaking of magnetic moment conservation in separatrix region because the charge separation generates intense variation of electric field within the electron Larmor radius. Meanwhile, electron perpendicular acceleration takes place manly due to the polarization drift term as well as the curvature drift term of E . u⊥ in the downstream near the X-point. The enhanced electric field due to the charge separation there results in a significant effect of the polarization drift term on the dissipation of magnetic energy within the ion inertia length in the downstream. Japan Society for the Promotion of Science (JSPS) Fellows 15J03758.

Trends in the Brazil/Malvinas Confluence region

NASA Astrophysics Data System (ADS)

Combes, Vincent; Matano, Ricardo P.

2014-12-01

Observations show abrupt changes in the oceanic circulation of the southwestern Atlantic. These studies report a southward drift of the Brazil/Malvinas Confluence (BMC) and a change in the spectral characteristics of the Malvinas Current (MC) transport. We address the cause of these changes using the result of a high-resolution numerical experiment. The experiment, which is consistent with observations, shows a southward BMC displacement at a rate of 0.62°/decade between 1993 and 2008, and a shift of the spectral characteristics of the MC transport after 1999. We find that these changes are driven by a weakening of the northern branch of the Antarctic Circumpolar Current, which translates to a weakening of the MC transport and a southward BMC drift. The drift changes the spectral characteristics of the MC transport, which becomes more influenced by annual and semiannual variations associated with the BMC.

Space Weather Effects on the Dynamics of Equatorial F Region Irregularities

NASA Astrophysics Data System (ADS)

Bhattacharyya, A.; Basu, S.; Groves, K.; Valladares, C.; Sheehan, R.

Space weather effects on transionospheric radio waves used for navigation and communication may be divided into two categories depending on the spatial scale size of the ionospheric perturbation produced by such effects. For large-scale (> 10 km) perturbations in the ionospheric plasma density, there are changes in the excess time delay for a radio wave signal, which propagates through the ionosphere, while small scale (< 1 m) structures or irregularities in the ionosphere may give rise tok amplitude and phase scintillations on UHF/L-band radio waves, resulting in loss of data, cycle slips and loss of phase lock for signals used in communication/navigation systems. In the equatorial region, where such effects may be severe, space weather effects on the dynamics of equatorial spread F (ESF) irregularities are studied from two different angles. The first one deals with the effect of magnetic activity on the generation of ESF irregularities by helping or hindering the growth of the Rayleigh Taylor (R-T) instability in the post-sunset equatorial F region. For this purpose, spaced receiver observations of scintillations on a UHF signal transmitted from a geostationary satellite and recorded near the dip equator, are used to establish the `age' of the irregularities. This is necessary because the occurrence of scintillations, particularly in the post midnight period, may also be due to irregularities which drift into the path of the radio wave signal, after having been generated more than 3 hours before the actual observation of scintillations. In order to associate the generation of irregularities with major changes in space weather, a parameter that is a measure of random variations in irregularity drift speed is computed from spaced receiver scintillation data. A large value of this parameter is usually a signature of random variations in irregularity drift due to polarization electric fields associated with freshly generated irregularities. Once these electric fields decay, the irregularities drift with the background plasma. This allows a study of the other effect of space weather on the dynamics of equatorial F region irregularities, viz. magnetically disturbed ionospheric drifts in the equatorial region. The drifts estimated for magnetically quiet days with ESF, within a period of a month, display far less variability than the quiet time variability for non-ESF days, thus making it possible to quantify perturbations in irregularity drift due to disturbance dynamo electric fields and/or prompt penetration of transient magnetospheric electric fields.

Landscape genetics of Schistocephalus solidus parasites in threespine stickleback (Gasterosteus aculeatus) from Alaska.

PubMed

Sprehn, C Grace; Blum, Michael J; Quinn, Thomas P; Heins, David C

2015-01-01

The nature of gene flow in parasites with complex life cycles is poorly understood, particularly when intermediate and definitive hosts have contrasting movement potential. We examined whether the fine-scale population genetic structure of the diphyllobothriidean cestode Schistocephalus solidus reflects the habits of intermediate threespine stickleback hosts or those of its definitive hosts, semi-aquatic piscivorous birds, to better understand complex host-parasite interactions. Seventeen lakes in the Cook Inlet region of south-central Alaska were sampled, including ten in the Matanuska-Susitna Valley, five on the Kenai Peninsula, and two in the Bristol Bay drainage. We analyzed sequence variation across a 759 bp region of the mitochondrial DNA (mtDNA) cytochrome oxidase I region for 1,026 S. solidus individuals sampled from 2009-2012. We also analyzed allelic variation at 8 microsatellite loci for 1,243 individuals. Analysis of mtDNA haplotype and microsatellite genotype variation recovered evidence of significant population genetic structure within S. solidus. Host, location, and year were factors in structuring observed genetic variation. Pairwise measures revealed significant differentiation among lakes, including a pattern of isolation-by-distance. Bayesian analysis identified three distinct genotypic clusters in the study region, little admixture within hosts and lakes, and a shift in genotype frequencies over time. Evidence of fine-scale population structure in S. solidus indicates that movement of its vagile, definitive avian hosts has less influence on gene flow than expected based solely on movement potential. Observed patterns of genetic variation may reflect genetic drift, behaviors of definitive hosts that constrain dispersal, life history of intermediate hosts, and adaptive specificity of S. solidus to intermediate host genotype.

Modeling and simulation of Cu diffusion and drift in porous CMOS backend dielectrics

NASA Astrophysics Data System (ADS)

Ali, R.; Fan, Y.; King, S.; Orlowski, M.

2018-06-01

With the advent of porous dielectrics, Cu drift-diffusion reliability issues in CMOS backend have only been exacerbated. In this regard, a modeling and simulation study of Cu atom/ion drift-diffusion in porous dielectrics is presented to assess the backend reliability and to explore conditions for a reliable Resistive Random Access Memory (RRAM) operation. The numerical computation, using elementary jump frequencies for a random walk in 2D and 3D, is based on an extended adjacency tensor concept. It is shown that Cu diffusion and drift transport are affected as much by the level of porosity as by the pore morphology. Allowance is made for different rates of Cu dissolution into the dielectric and for Cu absorption and transport at and on the inner walls of the pores. Most of the complex phenomena of the drift-diffusion transport in porous media can be understood in terms of local lateral and vertical gradients and the degree of their perturbation caused by the presence of pores in the transport domain. The impact of pore morphology, related to the concept of tortuosity, is discussed in terms of "channeling" and "trapping" effects. The simulations are calibrated to experimental results of porous SiCOH layers of 25 nm thickness, sandwiched between Cu and Pt(W) electrodes with experimental porosity levels of 0%, 8%, 12%, and 25%. We find that porous SICOH is more immune to Cu+ drift at 300 K than non-porous SICOH.

High genetic diversity in the endangered and narrowly distributed amphibian species Leptobrachium leishanense.

PubMed

Zhang, Wei; Luo, Zhenhua; Zhao, Mian; Wu, Hua

2015-09-01

Threatened species typically have a small or declining population size, which make them highly susceptible to loss of genetic diversity through genetic drift and inbreeding. Genetic diversity determines the evolutionary potential of a species; therefore, maintaining the genetic diversity of threatened species is essential for their conservation. In this study, we assessed the genetic diversity of the adaptive major histocompatibility complex (MHC) genes in an endangered and narrowly distributed amphibian species, Leptobrachium leishanense in Southwest China. We compared the genetic variation of MHC class I genes with that observed in neutral markers (5 microsatellite loci and cytochrome b gene) to elucidate the relative roles of genetic drift and natural selection in shaping the current MHC polymorphism in this species. We found a high level of genetic diversity in this population at both MHC and neutral markers compared with other threatened amphibian species. Historical positive selection was evident in the MHC class I genes. The higher allelic richness in MHC markers compared with that of microsatellite loci suggests that selection rather than genetic drift plays a prominent role in shaping the MHC variation pattern, as drift can affect all the genome in a similar way but selection directly targets MHC genes. Although demographic analysis revealed no recent bottleneck events in L. leishanense, additional population decline will accelerate the dangerous status for this species. We suggest that the conservation management of L. leishanense should concentrate on maximizing the retention of genetic diversity through preventing their continuous population decline. Protecting their living habitats and forbidding illegal hunting are the most important measures for conservation of L. leishanense. © 2015 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

[The validation of the effect of correcting spectral background changes based on floating reference method by simulation].

PubMed

Wang, Zhu-lou; Zhang, Wan-jie; Li, Chen-xi; Chen, Wen-liang; Xu, Ke-xin

2015-02-01

There are some challenges in near-infrared non-invasive blood glucose measurement, such as the low signal to noise ratio of instrument, the unstable measurement conditions, the unpredictable and irregular changes of the measured object, and etc. Therefore, it is difficult to extract the information of blood glucose concentrations from the complicated signals accurately. Reference measurement method is usually considered to be used to eliminate the effect of background changes. But there is no reference substance which changes synchronously with the anylate. After many years of research, our research group has proposed the floating reference method, which is succeeded in eliminating the spectral effects induced by the instrument drifts and the measured object's background variations. But our studies indicate that the reference-point will changes following the changing of measurement location and wavelength. Therefore, the effects of floating reference method should be verified comprehensively. In this paper, keeping things simple, the Monte Carlo simulation employing Intralipid solution with the concentrations of 5% and 10% is performed to verify the effect of floating reference method used into eliminating the consequences of the light source drift. And the light source drift is introduced through varying the incident photon number. The effectiveness of the floating reference method with corresponding reference-points at different wavelengths in eliminating the variations of the light source drift is estimated. The comparison of the prediction abilities of the calibration models with and without using this method shows that the RMSEPs of the method are decreased by about 98.57% (5%Intralipid)and 99.36% (10% Intralipid)for different Intralipid. The results indicate that the floating reference method has obvious effect in eliminating the background changes.

Frequency stabilization of diode-laser-pumped solid state lasers

NASA Technical Reports Server (NTRS)

Byer, Robert L.

1988-01-01

The goal of the NASA Sunlite program is to fly two diode-laser-pumped solid-state lasers on the space shuttle and while doing so to perform a measurement of their frequency stability and temporal coherence. These measurements will be made by combining the outputs of the two lasers on an optical radiation detector and spectrally analyzing the beat note. Diode-laser-pumped solid-state lasers have several characteristics that will make them useful in space borne experiments. First, this laser has high electrical efficiency. Second, it is of a technology that enables scaling to higher powers in the future. Third, the laser can be made extremely reliable, which is crucial for many space based applications. Fourth, they are frequency and amplitude stable and have high temporal coherence. Diode-laser-pumped solid-state lasers are inherently efficient. Recent results have shown 59 percent slope efficiency for a diode-laser-pumped solid-state laser. As for reliability, the laser proposed should be capable of continuous operation. This is possible because the diode lasers can be remote from the solid state gain medium by coupling through optical fibers. Diode lasers are constructed with optical detectors for monitoring their output power built into their mounting case. A computer can actively monitor the output of each diode laser. If it sees any variation in the output power that might indicate a problem, the computer can turn off that diode laser and turn on a backup diode laser. As for stability requirements, it is now generally believed that any laser can be stabilized if the laser has a frequency actuator capable of tuning the laser frequency as far as it is likely to drift in a measurement time.

Field experiment on spray drift: deposition and airborne drift during application to a winter wheat crop.

PubMed

Wolters, André; Linnemann, Volker; van de Zande, Jan C; Vereecken, Harry

2008-11-01

A field experiment was performed to evaluate various techniques for measuring spray deposition and airborne drift during spray application to a winter wheat crop. The application of a spraying agent containing the fluorescent dye Brilliant Sulfo Flavine by a conventional boom sprayer was done according to good agricultural practice. Deposition was measured by horizontal collectors in various arrangements in and outside the treated area. Airborne spray drift was measured both with a passive and an active air collecting system. Spray deposits on top of the treated canopy ranged between 68 and 71% of the applied dose and showed only small differences for various arrangements of the collectors. Furthermore, only small variations were measured within the various groups of collectors used for these arrangements. Generally, the highest spray deposition outside the treated area was measured close to the sprayed plot and was accompanied by a high variability of values, while a rapid decline of deposits was detected in more remote areas. Estimations of spray deposits with the IMAG Drift Calculator were in accordance with experimental findings only for areas located at a distance of 0.5-4.5 m from the last nozzle, while there was an overestimation of a factor of 4 at a distance of 2.0-3.0 m, thus revealing a high level of uncertainty of the estimation of deposition for short distances. Airborne spray drift measured by passive and active air collecting systems was approximately at the same level, when taking into consideration the collector efficiency of the woven nylon wire used as sampling material for the passive collecting system. The maximum value of total airborne spray drift for both spray applications (0.79% of the applied dose) was determined by the active collecting system. However, the comparatively high variability of measurements at various heights above the soil by active and passive collecting systems revealed need for further studies to elucidate the spatial pattern of airborne spray drift.

Center Frequency Stabilization in Planar Dual-Mode Resonators during Mode-Splitting Control

NASA Astrophysics Data System (ADS)

Naji, Adham; Soliman, Mina H.

2017-03-01

Shape symmetry in dual-mode planar electromagnetic resonators results in their ability to host two degenerate resonant modes. As the designer enforces a controllable break in the symmetry, the degeneracy is removed and the two modes couple, exchanging energy and elevating the resonator into its desirable second-order resonance operation. The amount of coupling is controlled by the degree of asymmetry introduced. However, this mode coupling (or splitting) usually comes at a price. The centre frequency of the perturbed resonator is inadvertently drifted from its original value prior to coupling. Maintaining centre frequency stability during mode splitting is a nontrivial geometric design problem. In this paper, we analyse the problem and propose a novel method to compensate for this frequency drift, based on field analysis and perturbation theory, and we validate the solution through a practical design example and measurements. The analytical method used works accurately within the perturbational limit. It may also be used as a starting point for further numerical optimization algorithms, reducing the required computational time during design, when larger perturbations are made to the resonator. In addition to enabling the novel design example presented, it is hoped that the findings will inspire akin designs for other resonator shapes, in different disciplines and applications.

Microcomputer-based system for registration of oxygen tension in peripheral muscle.

PubMed

Odman, S; Bratt, H; Erlandsson, I; Sjögren, L

1986-01-01

For registration of oxygen tension fields in peripheral muscle a microcomputer based system was designed on the M6800 microprocessor. The system was designed to record the signals from a multiwire oxygen electrode, MDO, which is a multiwire electrode for measuring oxygen on the surface of an organ. The system contained patient safety isolation unit built on optocopplers and the upper frequency limit was 0.64 Hz. Collected data were corrected for drift and temperature changes during the measurement by using pre- and after calibrations and a linear compensation technique. Measure drift of the electrodes were proved to be linear and thus the drift could be compensated for. The system was tested in an experiment on pig. To study the distribution of oxygen statistically mean, standard deviation, skewness and curtosis were calculated. To see changes or differences between histograms a Kolmogorv-Smirnov test was used.

Formation of annular plasma downstream by magnetic aperture in the helicon experimental device

NASA Astrophysics Data System (ADS)

Ghosh, Soumen; Yadav, S.; Barada, K. K.; Chattopadhyay, P. K.; Ghosh, J.; Pal, R.; Bora, D.

2017-02-01

In the Helicon eXperimental (HeX) device, the geometric aperture is fixed, but the position of the magnetic aperture can be varied. Working with Argon gas in the pressure range of 1 - 10 × 10 - 4 mbar, an annular plasma (density ˜ 10 16 m - 3 ) is formed downstream, always in front of the magnetic aperture. This occurs irrespective of the relative position of the geometric aperture or the presence of a radial electric field. This is in contrary to the earlier proposition made by others that a radial electric field is necessary to produce a hollow plasma profile. Instead, the ionization of neutrals in the radially outer region by the tail electrons, rotating fast due to gradient-B drift in the azimuthal direction, seems to account for the observed off-axis density peaking in the present experiment. This also explains the variation of the plasma annulus diameter seen here by changing the input radio frequency power ( 100 - 800 W ) .

Population Genomic Analysis Reveals a Rich Speciation and Demographic History of Orang-utans (Pongo pygmaeus and Pongo abelii)

PubMed Central

Ma, Xin; Kelley, Joanna L.; Eilertson, Kirsten; Musharoff, Shaila; Degenhardt, Jeremiah D.; Martins, André L.; Vinar, Tomas; Kosiol, Carolin; Siepel, Adam; Gutenkunst, Ryan N.; Bustamante, Carlos D.

2013-01-01

To gain insights into evolutionary forces that have shaped the history of Bornean and Sumatran populations of orang-utans, we compare patterns of variation across more than 11 million single nucleotide polymorphisms found by previous mitochondrial and autosomal genome sequencing of 10 wild-caught orang-utans. Our analysis of the mitochondrial data yields a far more ancient split time between the two populations (∼3.4 million years ago) than estimates based on autosomal data (0.4 million years ago), suggesting a complex speciation process with moderate levels of primarily male migration. We find that the distribution of selection coefficients consistent with the observed frequency spectrum of autosomal non-synonymous polymorphisms in orang-utans is similar to the distribution in humans. Our analysis indicates that 35% of genes have evolved under detectable negative selection. Overall, our findings suggest that purifying natural selection, genetic drift, and a complex demographic history are the dominant drivers of genome evolution for the two orang-utan populations. PMID:24194868

Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii).

PubMed

Ma, Xin; Kelley, Joanna L; Eilertson, Kirsten; Musharoff, Shaila; Degenhardt, Jeremiah D; Martins, André L; Vinar, Tomas; Kosiol, Carolin; Siepel, Adam; Gutenkunst, Ryan N; Bustamante, Carlos D

2013-01-01

To gain insights into evolutionary forces that have shaped the history of Bornean and Sumatran populations of orang-utans, we compare patterns of variation across more than 11 million single nucleotide polymorphisms found by previous mitochondrial and autosomal genome sequencing of 10 wild-caught orang-utans. Our analysis of the mitochondrial data yields a far more ancient split time between the two populations (~3.4 million years ago) than estimates based on autosomal data (0.4 million years ago), suggesting a complex speciation process with moderate levels of primarily male migration. We find that the distribution of selection coefficients consistent with the observed frequency spectrum of autosomal non-synonymous polymorphisms in orang-utans is similar to the distribution in humans. Our analysis indicates that 35% of genes have evolved under detectable negative selection. Overall, our findings suggest that purifying natural selection, genetic drift, and a complex demographic history are the dominant drivers of genome evolution for the two orang-utan populations.

Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation.

PubMed

von Wettberg, Eric J B; Chang, Peter L; Başdemir, Fatma; Carrasquila-Garcia, Noelia; Korbu, Lijalem Balcha; Moenga, Susan M; Bedada, Gashaw; Greenlon, Alex; Moriuchi, Ken S; Singh, Vasantika; Cordeiro, Matilde A; Noujdina, Nina V; Dinegde, Kassaye Negash; Shah Sani, Syed Gul Abbas; Getahun, Tsegaye; Vance, Lisa; Bergmann, Emily; Lindsay, Donna; Mamo, Bullo Erena; Warschefsky, Emily J; Dacosta-Calheiros, Emmanuel; Marques, Edward; Yilmaz, Mustafa Abdullah; Cakmak, Ahmet; Rose, Janna; Migneault, Andrew; Krieg, Christopher P; Saylak, Sevgi; Temel, Hamdi; Friesen, Maren L; Siler, Eleanor; Akhmetov, Zhaslan; Ozcelik, Huseyin; Kholova, Jana; Can, Canan; Gaur, Pooran; Yildirim, Mehmet; Sharma, Hari; Vadez, Vincent; Tesfaye, Kassahun; Woldemedhin, Asnake Fikre; Tar'an, Bunyamin; Aydogan, Abdulkadir; Bukun, Bekir; Penmetsa, R Varma; Berger, Jens; Kahraman, Abdullah; Nuzhdin, Sergey V; Cook, Douglas R

2018-02-13

Domesticated species are impacted in unintended ways during domestication and breeding. Changes in the nature and intensity of selection impart genetic drift, reduce diversity, and increase the frequency of deleterious alleles. Such outcomes constrain our ability to expand the cultivation of crops into environments that differ from those under which domestication occurred. We address this need in chickpea, an important pulse legume, by harnessing the diversity of wild crop relatives. We document an extreme domestication-related genetic bottleneck and decipher the genetic history of wild populations. We provide evidence of ancestral adaptations for seed coat color crypsis, estimate the impact of environment on genetic structure and trait values, and demonstrate variation between wild and cultivated accessions for agronomic properties. A resource of genotyped, association mapping progeny functionally links the wild and cultivated gene pools and is an essential resource chickpea for improvement, while our methods inform collection of other wild crop progenitor species.

Bottomside sinusoidal irregularities in the equatorial F region. II - Cross-correlation and spectral analysis

NASA Technical Reports Server (NTRS)

Cragin, B. L.; Hanson, W. B.; Mcclure, J. P.; Valladares, C. E.

1985-01-01

Equatorial bottomside sinusoidal (BSS) irregularities have been studied by applying techniques of cross-correlation and spectral analysis to the Atmosphere Explorer data set. The phase of the cross-correlations of the plasma number density is discussed and the two drift velocity components observed using the retarding potential analyzer and ion drift meter on the satellite are discussed. Morphology is addressed, presenting the geographical distributions of the occurrence of BSS events for the equinoxes and solstices. Physical processes including the ion Larmor flux, interhemispheric plasma flows, and variations in the lower F region Pedersen conductivity are invoked to explain the findings.

Theoretical Studies of Alfven Waves and Energetic Particle Physics in Fusion Plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Liu

This report summarizes major theoretical findings in the linear as well as nonlinear physics of Alfvén waves and energetic particles in magnetically confined fusion plasmas. On the linear physics, a variational formulation, based on the separation of singular and regular spatial scales, for drift-Alfvén instabilities excited by energetic particles is established. This variational formulation is then applied to derive the general fishbone-like dispersion relations corresponding to the various Alfvén eigenmodes and energetic-particle modes. It is further employed to explore in depth the low-frequency Alfvén eigenmodes and demonstrate the non-perturbative nature of the energetic particles. On the nonlinear physics, new novelmore » findings are obtained on both the nonlinear wave-wave interactions and nonlinear wave-energetic particle interactions. It is demonstrated that both the energetic particles and the fine radial mode structures could qualitatively affect the nonlinear evolution of Alfvén eigenmodes. Meanwhile, a theoretical approach based on the Dyson equation is developed to treat self-consistently the nonlinear interactions between Alfvén waves and energetic particles, and is then applied to explain simulation results of energetic-particle modes. Relevant list of journal publications on the above findings is also included.« less

Demonstration of high sensitivity laser ranging system

NASA Technical Reports Server (NTRS)

Millar, Pamela S.; Christian, Kent D.; Field, Christopher T.

1994-01-01

We report on a high sensitivity semiconductor laser ranging system developed for the Gravity and Magnetic Earth Surveyor (GAMES) for measuring variations in the planet's gravity field. The GAMES laser ranging instrument (LRI) consists of a pair of co-orbiting satellites, one which contains the laser transmitter and receiver and one with a passive retro-reflector mounted in an drag-stabilized housing. The LRI will range up to 200 km in space to the retro-reflector satellite. As the spacecraft pair pass over the spatial variations in the gravity field, they experience along-track accelerations which change their relative velocity. These time displaced velocity changes are sensed by the LRI with a resolution of 20-50 microns/sec. In addition, the pair may at any given time be drifting together or apart at a rate of up to 1 m/sec, introducing a Doppler shift into the ranging signals. An AlGaAs laser transmitter intensity modulated at 2 GHz and 10 MHz is used as fine and medium ranging channels. Range is measured by comparing phase difference between the transmit and received signals at each frequency. A separate laser modulated with a digital code, not reported in this paper, will be used for coarse ranging to unambiguously determine the distance up to 200 km.

Ionospheric disturbances in low- and middle-latitudes induced by neutral winds and vertical ExB drift during the 2015 St. Patrick's Day storm

NASA Astrophysics Data System (ADS)

Lee, W. K.; Kil, H.; Krall, J.

2016-12-01

Significant longitudinal and latitudinal modulations in plasma density were observed by satellites during the 17 March 2015 storm. Pronounced equatorial ionization anomaly (EIA) and ionization trough developed in the Indian sector (60°-90°E), whereas those features did not appear in the African sector (20°-40°E). Significant ionospheric uplift was observed in the Indian sector, but the uplift was ignorable in the African sector. The vertical ExB drift is an important factor for the longitudinal variation of the ionospheric morphology, but the observed latitudinal density profiles are not explained satisfactorily by the effect of the vertical ExB drift alone. In this study, we investigate the combined effect of vertical ExB drift and meridional winds by conducting SAMI2 (Sam2 is Another Model of the Ionosphere) model simulations. By comparing the model results with satellite observations, we will assess the ionospheric conditions in the Indian and African sectors. The observations of Defense Meteorological satellite Program, Swarm, and Communication/Navigation Outage Forecasting System satellites will be analyzed for this purpose.

Range Expansion and the Origin of USA300 North American Epidemic Methicillin-Resistant Staphylococcus aureus

PubMed Central

Challagundla, Lavanya; Luo, Xiao; Tickler, Isabella A.; Coombs, Geoffrey W.; Sordelli, Daniel O.; Brown, Eric L.; Skov, Robert; Larsen, Anders Rhod; Reyes, Jinnethe; Robledo, Iraida E.; Vazquez, Guillermo J.; Rivera, Raul; Fey, Paul D.; Stevenson, Kurt; Wang, Shu-Hua; Kreiswirth, Barry N.; Mediavilla, Jose R.; Arias, Cesar A.; Planet, Paul J.; Nolan, Rathel L.; Tenover, Fred C.; Goering, Richard V.

2018-01-01

ABSTRACT The USA300 North American epidemic (USA300-NAE) clone of methicillin-resistant Staphylococcus aureus has caused a wave of severe skin and soft tissue infections in the United States since it emerged in the early 2000s, but its geographic origin is obscure. Here we use the population genomic signatures expected from the serial founder effects of a geographic range expansion to infer the origin of USA300-NAE and identify polymorphisms associated with its spread. Genome sequences from 357 isolates from 22 U.S. states and territories and seven other countries are compared. We observe two significant signatures of range expansion, including decreases in genetic diversity and increases in derived allele frequency with geographic distance from the Pennsylvania region. These signatures account for approximately half of the core nucleotide variation of this clone, occur genome wide, and are robust to heterogeneity in temporal sampling of isolates, human population density, and recombination detection methods. The potential for positive selection of a gyrA fluoroquinolone resistance allele and several intergenic regions, along with a 2.4 times higher recombination rate in a resistant subclade, is noted. These results are the first to show a pattern of genetic variation that is consistent with a range expansion of an epidemic bacterial clone, and they highlight a rarely considered but potentially common mechanism by which genetic drift may profoundly influence bacterial genetic variation. PMID:29295910

Distribution and Functionality of Copy Number Variation across European Cattle Populations.

PubMed

Upadhyay, Maulik; da Silva, Vinicus H; Megens, Hendrik-Jan; Visker, Marleen H P W; Ajmone-Marsan, Paolo; Bâlteanu, Valentin A; Dunner, Susana; Garcia, Jose F; Ginja, Catarina; Kantanen, Juha; Groenen, Martien A M; Crooijmans, Richard P M A

2017-01-01

Copy number variation (CNV), which is characterized by large-scale losses or gains of DNA fragments, contributes significantly to genetic and phenotypic variation. Assessing CNV across different European cattle populations might reveal genetic changes responsible for phenotypic differences, which have accumulated throughout the domestication history of cattle as consequences of evolutionary forces that act upon them. To explore pattern of CNVs across European cattle, we genotyped 149 individuals, that represent different European regions, using the Illumina Bovine HD Genotyping array. A total of 9,944 autosomal CNVs were identified in 149 samples using a Hidden Markov Model (HMM) as employed in PennCNV. Animals originating from several breeds of British Isles, and Balkan and Italian regions, on average, displayed higher abundance of CNV counts than Dutch or Alpine animals. A total of 923 CNV regions (CNVRs) were identified by aggregating CNVs overlapping in at least two animals. The hierarchical clustering of CNVRs indicated low differentiation and sharing of high-frequency CNVRs between European cattle populations. Various CNVRs identified in the present study overlapped with olfactory receptor genes and genes related to immune system. In addition, we also detected a CNV overlapping the Kit gene in English longhorn cattle which has previously been associated with color-sidedness. To conclude, we provide a comprehensive overview of CNV distribution in genome of European cattle. Our results indicate an important role of purifying selection and genomic drift in shaping CNV diversity that exists between different European cattle populations.

Distribution and Functionality of Copy Number Variation across European Cattle Populations

PubMed Central

Upadhyay, Maulik; da Silva, Vinicus H.; Megens, Hendrik-Jan; Visker, Marleen H. P. W.; Ajmone-Marsan, Paolo; Bâlteanu, Valentin A.; Dunner, Susana; Garcia, Jose F.; Ginja, Catarina; Kantanen, Juha; Groenen, Martien A. M.; Crooijmans, Richard P. M. A.

2017-01-01

Copy number variation (CNV), which is characterized by large-scale losses or gains of DNA fragments, contributes significantly to genetic and phenotypic variation. Assessing CNV across different European cattle populations might reveal genetic changes responsible for phenotypic differences, which have accumulated throughout the domestication history of cattle as consequences of evolutionary forces that act upon them. To explore pattern of CNVs across European cattle, we genotyped 149 individuals, that represent different European regions, using the Illumina Bovine HD Genotyping array. A total of 9,944 autosomal CNVs were identified in 149 samples using a Hidden Markov Model (HMM) as employed in PennCNV. Animals originating from several breeds of British Isles, and Balkan and Italian regions, on average, displayed higher abundance of CNV counts than Dutch or Alpine animals. A total of 923 CNV regions (CNVRs) were identified by aggregating CNVs overlapping in at least two animals. The hierarchical clustering of CNVRs indicated low differentiation and sharing of high-frequency CNVRs between European cattle populations. Various CNVRs identified in the present study overlapped with olfactory receptor genes and genes related to immune system. In addition, we also detected a CNV overlapping the Kit gene in English longhorn cattle which has previously been associated with color-sidedness. To conclude, we provide a comprehensive overview of CNV distribution in genome of European cattle. Our results indicate an important role of purifying selection and genomic drift in shaping CNV diversity that exists between different European cattle populations. PMID:28878807

Negative self-referential processing is associated with genetic variation in the serotonin transporter-linked polymorphic region (5-HTTLPR): Evidence from two independent studies.

PubMed

Dainer-Best, Justin; Disner, Seth G; McGeary, John E; Hamilton, Bethany J; Beevers, Christopher G

2018-01-01

The current research examined whether carriers of the short 5-HTTLPR allele (in SLC6A4), who have been shown to selectively attend to negative information, exhibit a bias towards negative self-referent processing. The self-referent encoding task (SRET) was used to measure self-referential processing of positive and negative adjectives. Ratcliff's diffusion model isolated and extracted decision-making components from SRET responses and reaction times. Across the initial (N = 183) and replication (N = 137) studies, results indicated that short 5-HTTLPR allele carriers more easily categorized negative adjectives as self-referential (i.e., higher drift rate). Further, drift rate was associated with recall of negative self-referential stimuli. Findings across both studies provide further evidence that genetic variation may contribute to the etiology of negatively biased processing of self-referent information. Large scale studies examining the genetic contributions to negative self-referent processing may be warranted.

The Role of Genetic Drift in Shaping Modern Human Cranial Evolution: A Test Using Microevolutionary Modeling

PubMed Central

Smith, Heather F.

2011-01-01

The means by which various microevolutionary processes have acted in the past to produce patterns of cranial variation that characterize modern humans is not thoroughly understood. Applying a microevolutionary framework, within- and among-population variance/covariance (V/CV) structure was compared for several functional and developmental modules of the skull across a worldwide sample of modern humans. V/CV patterns in the basicranium, temporal bone, and face are proportional within and among groups, which is consistent with a hypothesis of neutral evolution; however, mandibular morphology deviated from this pattern. Degree of intergroup similarity in facial, temporal bone, and mandibular morphology is significantly correlated with geographic distance; however, much of the variance remains unexplained. These findings provide insight into the evolutionary history of modern human cranial variation by identifying signatures of genetic drift, gene flow, and migration and set the stage for inferences regarding selective pressures that early humans encountered since their initial migrations around the world. PMID:21461369

Testing the high turbulence level breakdown of low-frequency gyrokinetics against high-frequency cyclokinetic simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Deng, Zhao, E-mail: zhao.deng@foxmail.com; Waltz, R. E.

2015-05-15

This paper presents numerical simulations of the nonlinear cyclokinetic equations in the cyclotron harmonic representation [R. E. Waltz and Zhao Deng, Phys. Plasmas 20, 012507 (2013)]. Simulations are done with a local flux-tube geometry and with the parallel motion and variation suppressed using a newly developed rCYCLO code. Cyclokinetic simulations dynamically follow the high-frequency ion gyro-phase motion which is nonlinearly coupled into the low-frequency drift-waves possibly interrupting and suppressing gyro-averaging and increasing the transport over gyrokinetic levels. By comparing the more fundamental cyclokinetic simulations with the corresponding gyrokinetic simulations, the breakdown of gyrokinetics at high turbulence levels is quantitatively testedmore » over a range of relative ion cyclotron frequency 10 < Ω*{sup  }< 100 where Ω*{sup  }= 1/ρ*, and ρ* is the relative ion gyroradius. The gyrokinetic linear mode rates closely match the cyclokinetic low-frequency rates for Ω*{sup  }> 5. Gyrokinetic transport recovers cyclokinetic transport at high relative ion cyclotron frequency (Ω*{sup  }≥ 50) and low turbulence level as required. Cyclokinetic transport is found to be lower than gyrokinetic transport at high turbulence levels and low-Ω* values with stable ion cyclotron (IC) modes. The gyrokinetic approximation is found to break down when the density perturbations exceed 20%. For cyclokinetic simulations with sufficiently unstable IC modes and sufficiently low Ω*{sup  }∼ 10, the high-frequency component of cyclokinetic transport level can exceed the gyrokinetic transport level. However, the low-frequency component of the cyclokinetic transport and turbulence level does not exceed that of gyrokinetics. At higher and more physically relevant Ω*{sup  }≥ 50 values and physically realistic IC driving rates, the low-frequency component of the cyclokinetic transport and turbulence level is still smaller than that of gyrokinetics. Thus, the cyclokinetic simulations do not account for the so-called “L-mode near edge short fall” seen in some low-frequency gyrokinetic transport and turbulence simulations.« less

Proceedings of the STRESS Data Review Meeting, 29-30 November 1977

DTIC Science & Technology

1978-06-01

INSULATORS MAGNETOMETER BEACON ANTENNA fe?^ S-BAND ANTENNA- -DC PROBE SENSING ELEMENT PLASMA FREQUENCY PROBE MONOPOLE -GUARD ELECTRODE PLASMA...have demonstrated, using calculational results from MICE and MRHYDE (MHD computer codes), that the gradient-drift instability is the one primarily

Mixing of water masses caused by a drifting iceberg affects bacterial activity, community composition and substrate utilization capability in the Southern Ocean.

PubMed

Dinasquet, Julie; Richert, Inga; Logares, Ramiro; Yager, Patricia; Bertilsson, Stefan; Riemann, Lasse

2017-06-01

The number of icebergs produced from ice-shelf disintegration has increased over the past decade in Antarctica. These drifting icebergs mix the water column, influence stratification and nutrient condition, and can affect local productivity and food web composition. Data on whether icebergs affect bacterioplankton function and composition are scarce, however. We assessed the influence of iceberg drift on bacterial community composition and on their ability to exploit carbon substrates during summer in the coastal Southern Ocean. An elevated bacterial production and a different community composition were observed in iceberg-influenced waters relative to the undisturbed water column nearby. These major differences were confirmed in short-term incubations with bromodeoxyuridine followed by CARD-FISH. Furthermore, one-week bottle incubations amended with inorganic nutrients and carbon substrates (a mix of substrates, glutamine, N-acetylglucosamine, or pyruvate) revealed contrasting capacity of bacterioplankton to utilize specific carbon substrates in the iceberg-influenced waters compared with the undisturbed site. Our study demonstrates that the hydrographical perturbations introduced by a drifting iceberg can affect activity, composition, and substrate utilization capability of marine bacterioplankton. Consequently, in a context of global warming, increased frequency of drifting icebergs in polar regions holds the potential to affect carbon and nutrient biogeochemistry at local and possibly regional scales. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Color variations within glacial till, east-central North Dakota--A preliminary investigation

USGS Publications Warehouse

Kelly, T.E.; Baker, Claud H.

1966-01-01

Color variations (orange zones within buff-colored till) in drift in east-central North Dakota are believed to represent two tills of separate origin. Mean size, standard deviation, and number and type of pebbles show greater difference between the two tills than do skewness, kurtosis, and partial chemical analyses. Probably blocks of older till were moved by the last glacier crossing the area and were redeposited in a matrix of younger till.

Drift-Alfven eigenmodes in inhomogeneous plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vranjes, J.; Poedts, S.

2006-03-15

A set of three nonlinear equations describing drift-Alfven waves in a nonuniform magnetized plasma is derived and discussed both in linear and nonlinear limits. In the case of a cylindric radially bounded plasma with a Gaussian density distribution in the radial direction the linearized equations are solved exactly yielding general solutions for modes with quantized frequencies and with radially dependent amplitudes. The full set of nonlinear equations is also solved yielding particular solutions in the form of rotating radially limited structures. The results should be applicable to the description of electromagnetic perturbations in solar magnetic structures and in astrophysical column-likemore » objects including cosmic tornados.« less

Natural history of Ashkenazi intelligence.

PubMed

Cochran, Gregory; Hardy, Jason; Harpending, Henry

2006-09-01

This paper elaborates the hypothesis that the unique demography and sociology of Ashkenazim in medieval Europe selected for intelligence. Ashkenazi literacy, economic specialization, and closure to inward gene flow led to a social environment in which there was high fitness payoff to intelligence, specifically verbal and mathematical intelligence but not spatial ability. As with any regime of strong directional selection on a quantitative trait, genetic variants that were otherwise fitness reducing rose in frequency. In particular we propose that the well-known clusters of Ashkenazi genetic diseases, the sphingolipid cluster and the DNA repair cluster in particular, increase intelligence in heterozygotes. Other Ashkenazi disorders are known to increase intelligence. Although these disorders have been attributed to a bottleneck in Ashkenazi history and consequent genetic drift, there is no evidence of any bottleneck. Gene frequencies at a large number of autosomal loci show that if there was a bottleneck then subsequent gene flow from Europeans must have been very large, obliterating the effects of any bottleneck. The clustering of the disorders in only a few pathways and the presence at elevated frequency of more than one deleterious allele at many of them could not have been produced by drift. Instead these are signatures of strong and recent natural selection.

Relationship Between the Parameters of the Linear and Nonlinear Wave Generation Stages in a Magnetospheric Cyclotron Maser in the Backward-Wave Oscillator Regime

NASA Astrophysics Data System (ADS)

Demekhov, A. G.

2017-03-01

By using numerical simulations we generalize certain relationships between the parameters of quasimonochromatic whistler-mode waves generated at the linear and nonlinear stages of the cyclotron instability in the backward-wave oscillator regime. One of these relationships is between the wave amplitude at the nonlinear stage and the linear growth rate of the cyclotron instability. It was obtained analytically by V.Yu.Trakhtengerts (1984) for a uniform medium under the assumption of constant frequency and amplitude of the generated wave. We show that a similar relationship also holds for the signals generated in a nonuniform magnetic field and having a discrete structure in the form of short wave packets (elements) with fast frequency drift inside each element. We also generalize the formula for the linear growth rate of absolute cyclotron instability in a nonuniform medium and analyze the relationship between the frequency drift rate in the discrete elements and the wave amplitude. These relationships are important for analyzing the links between the parameters of chorus emissions in the Earth's and planetary magnetospheres and the characteristics of the energetic charged particles generating these signals.

Fourier-domain study of drift turbulence driven sheared flow in a laboratory plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, M.; Tynan, G. R.; Holland, C.

2010-03-15

Frequency-resolved nonlinear internal and kinetic energy transfer rates have been measured in the Controlled Shear Decorrelation Experiment (CSDX) linear plasma device using a recently developed technique [Xu et al., Phys. Plasmas 16, 042312 (2009)]. The results clearly show a net kinetic energy transfer into the zonal flow frequency region, consistent with previous time-domain observations of turbulence-driven shear flows [Tynan et al., Plasma Phys. Controlled Fusion 48, S51 (2006)]. The experimentally measured dispersion relation has been used to map the frequency-resolved energy transfer rates into the wave number domain, which shows that the shear flow drive comes from midrange (k{sub t}hetarho{submore » S}>0.3) drift fluctuations, and the strongest flow drive comes from k{sub t}hetarho{sub S}approx =1 fluctuations. Linear growth rates have been inferred from a linearized Hasegawa-Wakatani model [Hasegawa et al., Phys. Fluids 22, 2122 (1979)], which indicates that the m=0 mode is linearly stable and the m=1-10 modes (corresponding to k{sub t}hetarho{sub S}>0.3) are linearly unstable for the n=1 and n=2 radial eigenmodes. This is consistent with our energy transfer measurements.« less

Correlating the Integral Sensing Properties of Zeolites with Molecular Processes by Combining Broadband Impedance and DRIFT Spectroscopy—A New Approach for Bridging the Scales

PubMed Central

Chen, Peirong; Schönebaum, Simon; Simons, Thomas; Rauch, Dieter; Dietrich, Markus; Moos, Ralf; Simon, Ulrich

2015-01-01

Zeolites have been found to be promising sensor materials for a variety of gas molecules such as NH3, NOx, hydrocarbons, etc. The sensing effect results from the interaction of the adsorbed gas molecules with mobile cations, which are non-covalently bound to the zeolite lattice. The mobility of the cations can be accessed by electrical low-frequency (LF; mHz to MHz) and high-frequency (HF; GHz) impedance measurements. Recent developments allow in situ monitoring of catalytic reactions on proton-conducting zeolites used as catalysts. The combination of such in situ impedance measurements with diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS), which was applied to monitor the selective catalytic reduction of nitrogen oxides (DeNOx-SCR), not only improves our understanding of the sensing properties of zeolite catalysts from integral electric signal to molecular processes, but also bridges the length scales being studied, from centimeters to nanometers. In this work, recent developments of zeolite-based, impedimetric sensors for automotive exhaust gases, in particular NH3, are summarized. The electrical response to NH3 obtained from LF impedance measurements will be compared with that from HF impedance measurements, and correlated with the infrared spectroscopic characteristics obtained from the DRIFTS studies of molecules involved in the catalytic conversion. The future perspectives, which arise from the combination of these methods, will be discussed. PMID:26580627

Complete Numerical Solution of the Diffusion Equation of Random Genetic Drift

PubMed Central

Zhao, Lei; Yue, Xingye; Waxman, David

2013-01-01

A numerical method is presented to solve the diffusion equation for the random genetic drift that occurs at a single unlinked locus with two alleles. The method was designed to conserve probability, and the resulting numerical solution represents a probability distribution whose total probability is unity. We describe solutions of the diffusion equation whose total probability is unity as complete. Thus the numerical method introduced in this work produces complete solutions, and such solutions have the property that whenever fixation and loss can occur, they are automatically included within the solution. This feature demonstrates that the diffusion approximation can describe not only internal allele frequencies, but also the boundary frequencies zero and one. The numerical approach presented here constitutes a single inclusive framework from which to perform calculations for random genetic drift. It has a straightforward implementation, allowing it to be applied to a wide variety of problems, including those with time-dependent parameters, such as changing population sizes. As tests and illustrations of the numerical method, it is used to determine: (i) the probability density and time-dependent probability of fixation for a neutral locus in a population of constant size; (ii) the probability of fixation in the presence of selection; and (iii) the probability of fixation in the presence of selection and demographic change, the latter in the form of a changing population size. PMID:23749318

Estimation of Acoustic Particle Motion and Source Bearing Using a Drifting Hydrophone Array Near a River Current Turbine to Assess Disturbances to Fish

NASA Astrophysics Data System (ADS)

Murphy, Paul G.

River hydrokinetic turbines may be an economical alternative to traditional energy sources for small communities on Alaskan rivers. However, there is concern that sound from these turbines could affect sockeye salmon (Oncorhynchus nerka), an important resource for small, subsistence based communities, commercial fisherman, and recreational anglers. The hearing sensitivity of sockeye salmon has not been quantified, but behavioral responses to sounds at frequencies less than a few hundred Hertz have been documented for Atlantic salmon (Salmo salar), and particle motion is thought to be the primary mode of stimulation. Methods of measuring acoustic particle motion are well-established, but have rarely been necessary in energetic areas, such as river and tidal current environments. In this study, the acoustic pressure in the vicinity of an operating river current turbine is measured using a freely drifting hydrophone array. Analysis of turbine sound reveals tones that vary in frequency and magnitude with turbine rotation rate, and that may sockeye salmon may sense. In addition to pressure, the vertical components of particle acceleration and velocity are estimated by calculating the finite difference of the pressure signals from the hydrophone array. A method of determining source bearing using an array of hydrophones is explored. The benefits and challenges of deploying drifting hydrophone arrays for marine renewable energy converter monitoring are discussed.

Theory comparison and numerical benchmarking on neoclassical toroidal viscosity torque

NASA Astrophysics Data System (ADS)

Wang, Zhirui; Park, Jong-Kyu; Liu, Yueqiang; Logan, Nikolas; Kim, Kimin; Menard, Jonathan E.

2014-04-01

Systematic comparison and numerical benchmarking have been successfully carried out among three different approaches of neoclassical toroidal viscosity (NTV) theory and the corresponding codes: IPEC-PENT is developed based on the combined NTV theory but without geometric simplifications [Park et al., Phys. Rev. Lett. 102, 065002 (2009)]; MARS-Q includes smoothly connected NTV formula [Shaing et al., Nucl. Fusion 50, 025022 (2010)] based on Shaing's analytic formulation in various collisionality regimes; MARS-K, originally computing the drift kinetic energy, is upgraded to compute the NTV torque based on the equivalence between drift kinetic energy and NTV torque [J.-K. Park, Phys. Plasma 18, 110702 (2011)]. The derivation and numerical results both indicate that the imaginary part of drift kinetic energy computed by MARS-K is equivalent to the NTV torque in IPEC-PENT. In the benchmark of precession resonance between MARS-Q and MARS-K/IPEC-PENT, the agreement and correlation between the connected NTV formula and the combined NTV theory in different collisionality regimes are shown for the first time. Additionally, both IPEC-PENT and MARS-K indicate the importance of the bounce harmonic resonance which can greatly enhance the NTV torque when E ×B drift frequency reaches the bounce resonance condition.

Drift Mode Accelerometry for Spaceborne Gravity Measurements

NASA Astrophysics Data System (ADS)

Conklin, J. W.; Shelley, R.; Chilton, A.; Olatunde, T.; Ciani, G.; Mueller, G.

2014-12-01

A drift mode accelerometer is a precision instrument for spacecraft that overcomes much of the acceleration noise and readout dynamic range limitations of traditional electrostatic accelerometers. It has the potential of achieving acceleration noise performance similar to that of drag-free systems over a restricted frequency band without the need for external drag-free control or continuous spacecraft propulsion. Like traditional accelerometers, the drift mode accelerometer contains a high-density test mass surrounded by an electrode housing, which can control and sense all six degrees of freedom of the test mass. Unlike traditional accelerometers, the suspension system is operated with a low duty cycle so that the limiting suspension force noise only acts over brief, known time intervals, which can be accounted for in the data analysis. The readout is performed using a laser interferometer which is immune to the dynamic range limitations of even the best voltage references typically used to determine the inertial acceleration of electrostatic accelerometers. This presentation describes operation and performance modeling for such a device with respect to a low Earth orbiting satellite geodesy mission. Methods for testing the drift mode accelerometer with the University of Florida precision torsion pendulum will also be discussed.

Founding events influence genetic population structure of sockeye salmon (Oncorhynchus nerka) in Lake Clark, Alaska

USGS Publications Warehouse

Ramstad, K.M.; Woody, C.A.; Sage, G.K.; Allendorf, F.W.

2004-01-01

Bottlenecks can have lasting effects on genetic population structure that obscure patterns of contemporary gene flow and drift. Sockeye salmon are vulnerable to bottleneck effects because they are a highly structured species with excellent colonizing abilities and often occupy geologically young habitats. We describe genetic divergence among and genetic variation within spawning populations of sockeye salmon throughout the Lake Clark area of Alaska. Fin tissue was collected from sockeye salmon representing 15 spawning populations of Lake Clark, Six-mile Lake, and Lake Iliamna. Allele frequencies differed significantly at 11 microsatellite loci in 96 of 105 pairwise population comparisons. Pairwise estimates of FST ranged from zero to 0.089. Six-mile Lake and Lake Clark populations have historically been grouped together for management purposes and are geographically proximate. However, Six-mile Lake populations are genetically similar to Lake Iliamna populations and are divergent from Lake Clark populations. The reduced allelic diversity and strong divergence of Lake Clark populations relative to Six-mile Lake and Lake Iliamna populations suggest a bottleneck associated with the colonization of Lake Clark by sockeye salmon. Geographic distance and spawning habitat differences apparently do not contribute to isolation and divergence among populations. However, temporal isolation based on spawning time and founder effects associated with ongoing glacial retreat and colonization of new spawning habitats contribute to the genetic population structure of Lake Clark sock-eye salmon. Nonequilibrium conditions and the strong influence of genetic drift caution against using estimates of divergence to estimate gene flow among populations of Lake Clark sockeye salmon.

GABA editing with macromolecule suppression using an improved MEGA-SPECIAL sequence.

PubMed

Gu, Meng; Hurd, Ralph; Noeske, Ralph; Baltusis, Laima; Hancock, Roeland; Sacchet, Matthew D; Gotlib, Ian H; Chin, Frederick T; Spielman, Daniel M

2018-01-01

The most common γ-aminobutyric-acid (GABA) editing approach, MEGA-PRESS, uses J-editing to measure GABA distinct from larger overlapping metabolites, but suffers contamination from coedited macromolecules (MMs) comprising 40 to 60% of the observed signal. MEGA-SPECIAL is an alternative method with better MM suppression, but is not widely used primarily because of its relatively poor spatial localization. Our goal was to develop an improved MM-suppressed GABA editing sequence at 3 Tesla. We modified a single-voxel MEGA-SPECIAL sequence with an oscillating readout gradient for improved spatial localization, and used very selective 30-ms editing pulses for improved suppression of coedited MMs. Simulation and in vivo experiments confirmed excellent MM suppression, insensitive to the range of B 0 frequency drifts typically encountered in vivo. Both intersubject and intrasubject studies showed that MMs, when suppressed by the improved MEGA-SPECIAL method, contributed approximately 40% to the corresponding MEGA-PRESS measurements. From the intersubject study, the coefficient of variation for GABA+/Cre (MEGA-PRESS) was 11.2% versus 7% for GABA/Cre (improved MEGA-SPECIAL), demonstrating significantly reduced variance (P = 0.005), likely coming from coedited MMs. This improved MEGA-SPECIAL sequence provides unbiased GABA measurements with reduced variance as compared with conventional MEGA-PRESS. This approach is also relatively insensitive to the range of B 0 drifts typically observed in in vivo human studies. Magn Reson Med 79:41-47, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Validation of a new micro-manometer pressure sensor for cardiovascular measurements in mice.

PubMed

Trevino, Rodolfo J; Jones, Douglas L; Escobedo, Daniel; Porterfield, John; Larson, Erik; Chisholm, Gary B; Barton, Amanda; Feldman, Marc D

2010-01-01

Abstract The Scisense (London, ON, Canada) micro-manometer pressure sensor is currently being used by investigators to evaluate cardiovascular physiology in mice, but has not been validated to date. The purpose of the current study is to compare the 1.2 F Scisense pressure sensor to the current gold standard produced by Millar Instruments (Houston, TX) (1.4 F). In vitro comparisons were preformed including temperature drift, frequency response analysis up to 250 Hz, and damping coefficient and natural frequency determined via a pop test. The authors also performed in vivo comparisons including pressure drift, dose-response studies to IV isoproterenol, maximum adrenergic stimulation with IV dobutamine, and simultaneous placement of both micro-manometer pressure sensors in the same intact murine hearts. The authors conclude that both sensors are equivalent, and that the Scisense pressure sensor represents an alternative to the current gold standard, the Millar micro-manometer pressure sensor for in vivo pressure measurements in the mouse.

Guiding center model to interpret neutral particle analyzer results

NASA Technical Reports Server (NTRS)

Englert, G. W.; Reinmann, J. J.; Lauver, M. R.

1974-01-01

The theoretical model is discussed, which accounts for drift and cyclotron components of ion motion in a partially ionized plasma. Density and velocity distributions are systematically precribed. The flux into the neutral particle analyzer (NPA) from this plasma is determined by summing over all charge exchange neutrals in phase space which are directed into apertures. Especially detailed data, obtained by sweeping the line of sight of the apertures across the plasma of the NASA Lewis HIP-1 burnout device, are presented. Selection of randomized cyclotron velocity distributions about mean azimuthal drift yield energy distributions which compared well with experiment. Use of data obtained with a bending magnet on the NPA showed that separation between energy distribution curves of various mass species correlate well with a drift divided by mean cyclotron energy parameter of the theory. Use of the guiding center model in conjunction with NPA scans across the plasma aid in estimates of ion density and E field variation with plasma radius.

Human Behavior Drift Detection in a Smart Home Environment.

PubMed

Masciadri, Andrea; Trofimova, Anna A; Matteucci, Matteo; Salice, Fabio

2017-01-01

The proposed system aims at elderly people independent living by providing an early indicator of habits changes which might be relevant for a diagnosis of diseases. It relies on Hidden Markov Model to describe the behavior observing sensors data, while Likelihood Ratio Test gives the variation within different time periods.

Real-time tree foliage density estimation with laser scanning sensor for variable-rate tree sprayer development

USDA-ARS?s Scientific Manuscript database

Trees, even in the same orchard or nursery, can have considerably different structures and foliage densities. Conventional chemical applications often spray the entire field at a constant rate without considering field variations, resulting in excessive chemical waste and spray drift. To address thi...

Drift-Alfven wave mediated particle transport in an elongated density depression

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vincena, Stephen; Gekelman, Walter

Cross-field particle transport due to drift-Alfven waves is measured in an elongated density depression within an otherwise uniform, magnetized helium plasma column. The depression is formed by drawing an electron current to a biased copper plate with cross-field dimensions of 28x0.24 ion sound-gyroradii {rho}{sub s}=c{sub s}/{omega}{sub ci}. The process of density depletion and replenishment via particle flux repeats in a quasiperiodic fashion for the duration of the current collection. The mode structure of the wave density fluctuations in the plane perpendicular to the background magnetic field is revealed using a two-probe correlation technique. The particle flux as a function ofmore » frequency is measured using a linear array of Langmuir probes and the only significant transport occurs for waves with frequencies between 15%-25% of the ion cyclotron frequency (measured in the laboratory frame) and with perpendicular wavelengths k{sub perpendicular}{rho}{sub s}{approx}0.7. The frequency-integrated particle flux is in rough agreement with observed increases in density in the center of the depletion as a function of time. The experiments are carried out in the Large Plasma Device (LAPD) [Gekelman et al., Rev. Sci. Instrum. 62, 2875 (1991)] at the Basic Plasma Science Facility located at the University of California, Los Angeles.« less

High-Beta Electromagnetic Turbulence in LAPD Plasmas

NASA Astrophysics Data System (ADS)

Rossi, G.; Carter, T. A.; Pueschel, M. J.; Jenko, F.; Told, D.; Terry, P. W.

2015-11-01

The introduction of a new LaB6 cathode plasma source in the Large Plasma Device has enabled the study of pressure-gradient-driven turbulence and transport variations at significantly higher plasma β. Density fluctuations are observed to decrease with increasing β while magnetic fluctuations increase. Furthermore, the perpendicular magnetic fluctuations are seen to saturate while parallel (compressional) magnetic fluctuations increase continuously with β. These observations are compared to linear and nonlinear simulations with the GENE code. The results are consistent with the linear excitation of a Gradient-driven Drift Coupling mode (GDC) which relies on grad-B drift due to parallel magnetic fluctuations and can be driven by density or temperature gradients.

Modeling Food Delivery Dynamics For Juvenile Salmonids Under Variable Flow Regimes

NASA Astrophysics Data System (ADS)

Harrison, L.; Utz, R.; Anderson, K.; Nisbet, R.

2010-12-01

Traditional approaches for assessing instream flow needs for salmonids have typically focused on the importance of physical habitat in determining fish habitat selection. This somewhat simplistic approach does not account for differences in food delivery rates to salmonids that arise due to spatial variability in river morphology, hydraulics and temporal variations in the flow regime. Explicitly linking how changes in the flow regime influences food delivery dynamics is an important step in advancing process-based bioenergetic models that seek to predict growth rates of salmonids across various life-stages. Here we investigate how food delivery rates for juvenile salmonids vary both spatially and with flow magnitude in a meandering reach of the Merced River, CA. We utilize a two-dimensional (2D) hydrodynamic model and discrete particle tracking algorithm to simulate invertebrate drift transport rates at baseflow and a near-bankfull discharge. Modeling results indicate that at baseflow, the maximum drift density occurs in the channel thalweg, while drift densities decrease towards the channel margins due to the process of organisms settling out of the drift. During high-flow events, typical of spring dam-releases, the invertebrate drift transport pathway follows a similar trajectory along the high velocity core and the drift concentrations are greatest in the channel centerline, though the zone of invertebrate transport occupies a greater fraction of the channel width. Based on invertebrate supply rates alone, feeding juvenile salmonids would be expected to be distributed down the channel centerline where the maximum predicted food delivery rates are located in this reach. However, flow velocities in these channel sections are beyond maximum sustainable swimming speeds for most juvenile salmonids. Our preliminary findings suggest that a lack of low velocity refuge may prevent juvenile salmonids from deriving energy from the areas with maximum drift density in this reach. Future efforts will focus on integration of food delivery and bioenergetic models to account for conflicting demands of maximizing food intake while minimizing the energetic costs of swimming.

Deep Zonal Flow and Time Variation of Jupiter’s Magnetic Field

NASA Astrophysics Data System (ADS)

Cao, Hao; Stevenson, David J.

2017-10-01

All four giant planets in the Solar System feature zonal flows on the order of 100 m/s in the cloud deck, and large-scale intrinsic magnetic fields on the order of 1 Gauss near the surface. The vertical structure of the zonal flows remains obscure. The end-member scenarios are shallow flows confined in the radiative atmosphere and deep flows throughout the entire planet. The electrical conductivity increases rapidly yet smoothly as a function of depth inside Jupiter and Saturn. Deep zonal flows will advect the non-axisymmetric component of the magnetic field, at depth with even modest electrical conductivity, and create time variations in the magnetic field.The observed time variations of the geomagnetic field has been used to derive surface flows of the Earth’s outer core. The same principle applies to Jupiter, however, the connection between the time variation of the magnetic field (dB/dt) and deep zonal flow (Uphi) at Jupiter is not well understood due to strong radial variation of electrical conductivity. Here we perform a quantitative analysis of the connection between dB/dt and Uphi for Jupiter adopting realistic interior electrical conductivity profile, taking the likely presence of alkali metals into account. This provides a tool to translate expected measurement of the time variation of Jupiter’s magnetic field to deep zonal flows. We show that the current upper limit on the dipole drift rate of Jupiter (3 degrees per 20 years) is compatible with 10 m/s zonal flows with < 500 km vertical scale height below 0.972 Rj. We further demonstrate that fast drift of resolved magnetic features (e.g. magnetic spots) at Jupiter is a possibility.

Doubling the spectrum of time-domain induced polarization by harmonic de-noising, drift correction, spike removal, tapered gating and data uncertainty estimation

NASA Astrophysics Data System (ADS)

Olsson, Per-Ivar; Fiandaca, Gianluca; Larsen, Jakob Juul; Dahlin, Torleif; Auken, Esben

2016-11-01

The extraction of spectral information in the inversion process of time-domain (TD) induced polarization (IP) data is changing the use of the TDIP method. Data interpretation is evolving from a qualitative description of the subsurface, able only to discriminate the presence of contrasts in chargeability parameters, towards a quantitative analysis of the investigated media, which allows for detailed soil- and rock-type characterization. Two major limitations restrict the extraction of the spectral information of TDIP data in the field: (i) the difficulty of acquiring reliable early-time measurements in the millisecond range and (ii) the self-potential background drift in the measured potentials distorting the shape of the late-time IP responses, in the second range. Recent developments in TDIP acquisition equipment have given access to full-waveform recordings of measured potentials and transmitted current, opening for a breakthrough in data processing. For measuring at early times, we developed a new method for removing the significant noise from power lines contained in the data through a model-based approach, localizing the fundamental frequency of the power-line signal in the full-waveform IP recordings. By this, we cancel both the fundamental signal and its harmonics. Furthermore, an efficient processing scheme for identifying and removing spikes in TDIP data was developed. The noise cancellation and the de-spiking allow the use of earlier and narrower gates, down to a few milliseconds after the current turn-off. In addition, tapered windows are used in the final gating of IP data, allowing the use of wider and overlapping gates for higher noise suppression with minimal distortion of the signal. For measuring at late times, we have developed an algorithm for removal of the self-potential drift. Usually constant or linear drift-removal algorithms are used, but these algorithms often fail in removing the background potentials present when the electrodes used for potential readings are previously used for current injection, also for simple contact resistance measurements. We developed a drift-removal scheme that models the polarization effect and efficiently allows for preserving the shape of the IP responses at late times. Uncertainty estimates are essential in the inversion of IP data. Therefore, in the final step of the data processing, we estimate the data standard deviation based on the data variability within the IP gates and the misfit of the background drift removal Overall, the removal of harmonic noise, spikes, self-potential drift, tapered windowing and the uncertainty estimation allows for doubling the usable range of TDIP data to almost four decades in time (corresponding to four decades in frequency), which will significantly advance the applicability of the IP method.

Drift-Scale Coupled Processes (DST and THC Seepage) Models

DOE Office of Scientific and Technical Information (OSTI.GOV)

P. Dixon

The purpose of this Model Report (REV02) is to document the unsaturated zone (UZ) models used to evaluate the potential effects of coupled thermal-hydrological-chemical (THC) processes on UZ flow and transport. This Model Report has been developed in accordance with the ''Technical Work Plan for: Performance Assessment Unsaturated Zone'' (Bechtel SAIC Company, LLC (BSC) 2002 [160819]). The technical work plan (TWP) describes planning information pertaining to the technical scope, content, and management of this Model Report in Section 1.12, Work Package AUZM08, ''Coupled Effects on Flow and Seepage''. The plan for validation of the models documented in this Model Reportmore » is given in Attachment I, Model Validation Plans, Section I-3-4, of the TWP. Except for variations in acceptance criteria (Section 4.2), there were no deviations from this TWP. This report was developed in accordance with AP-SIII.10Q, ''Models''. This Model Report documents the THC Seepage Model and the Drift Scale Test (DST) THC Model. The THC Seepage Model is a drift-scale process model for predicting the composition of gas and water that could enter waste emplacement drifts and the effects of mineral alteration on flow in rocks surrounding drifts. The DST THC model is a drift-scale process model relying on the same conceptual model and much of the same input data (i.e., physical, hydrological, thermodynamic, and kinetic) as the THC Seepage Model. The DST THC Model is the primary method for validating the THC Seepage Model. The DST THC Model compares predicted water and gas compositions, as well as mineral alteration patterns, with observed data from the DST. These models provide the framework to evaluate THC coupled processes at the drift scale, predict flow and transport behavior for specified thermal-loading conditions, and predict the evolution of mineral alteration and fluid chemistry around potential waste emplacement drifts. The DST THC Model is used solely for the validation of the THC Seepage Model and is not used for calibration to measured data.« less

Ground-water movement and effects of coal strip mining on water quality of high-wall lakes and aquifers in the Macon-Huntsville area, north- central Missouri

USGS Publications Warehouse

Hall, D.C.; Davis, R.E.

1986-01-01

Glacial drift and Pennsylvanian bedrock were mixed together forming spoil during pre-reclamation strip mining for coal in north-central Missouri. This restructuring of the land increases the porosity of the material, and increases aqueous concentrations of many dissolved constituents. Median sodium and bicarbonate concentrations were slightly greater, calcium 5 times greater, magnesium 6 times greater, manganese 15 times greater, iron 19 times greater, and sulfate 24 times greater in water from spoil than in water from glacial drift. Median potassium concentrations were slightly greater, and chloride concentrations were two times greater in water from glacial drift than in water from spoil. Water types in glacial drift and bedrock were mostly sodium bicarbonate and calcium bicarbonate; in spoil and lakes in the spoil, the water types were mostly calcium sulfate. Median pH values in water from spoil were 6.6, as compared to 7.4 in water from glacial drift and 9.0 in water from bedrock. Neutralization of acid by carbonate rocks causes the moderate pH values in water from spoil; a carbonate system closed to the atmosphere may result in alkaline pH values in bedrock. Transmissivities generally are greatest for spoil, and decrease in the following order: alluvium, glacial drift, and bedrock. Recharge to spoil is from precipitation, lateral flow from glacial drift, and lateral and vertical flow from bedrock. The rate of recharge to the aquifers is unknown, but probably is small. Groundwater discharge from the glacial drift, bedrock, and spoil is to alluvium. The direction of flow generally was from high-wall lakes in the spoil toward East Fork Little Chariton River or South Fork Claybank Creek. Significant differences (95% confidence level) in values and concentrations of aqueous constituents between spoil areas mined at different times (1940, 1952, and 1968) were obtained for pH, calcium, magnesium, manganese, sulfate, chloride, and dissolved solids, but not for iron. These differences are attributed to local variations in the geohydrologic system rather than spoil age. (Lantz-PTT)

Precision of Four Acoustic Bone Measurement Devices

NASA Technical Reports Server (NTRS)

Miller, Christopher; Feiveson, Alan H.; Shackelford, Linda; Rianon, Nahida; LeBlanc, Adrian

2000-01-01

Though many studies have quantified the precision of various acoustic bone measurement devices, it is difficult to directly compare the results among the studies, because they used disparate subject pools, did not specify the estimation methodology, or did not use consistent definitions for various precision characteristics. In this study, we used a repeated measures design protocol to directly determine the precision characteristics of four acoustic bone measurement devices: the Mechanical Response Tissue Analyzer (MRTA), the UBA-575+, the SoundScan 2000 (S2000), and the Sahara Ultrasound Done Analyzer. Ten men and ten women were scanned on all four devices by two different operators at five discrete time points: Week 1, Week 2, Week 3, Month 3 and Month 6. The percent coefficient of variation (%CV) and standardized coefficient of variation were computed for the following precision characteristics: interoperator effect, operator-subject interaction, short-term error variance, and long-term drift, The MRTA had high interoperator errors for its ulnar and tibial stiffness measures and a large long-term drift in its tibial stiffness measurement. The UBA-575+ exhibited large short-term error variances and long-term drift for all three of its measurements. The S2000's tibial speed of sound measurement showed a high short-term error variance and a significant operator-subject interaction but very good values ( < 1%) for the other precision characteristics. The Sahara seemed to have the best overall performance, but was hampered by a large %CV for short-term error variance in its broadband ultrasound attenuation measure.

Effective size of density-dependent two-sex populations: the effect of mating systems.

PubMed

Myhre, A M; Engen, S; SAEther, B-E

2017-08-01

Density dependence in vital rates is a key feature affecting temporal fluctuations of natural populations. This has important implications for the rate of random genetic drift. Mating systems also greatly affect effective population sizes, but knowledge of how mating system and density regulation interact to affect random genetic drift is poor. Using theoretical models and simulations, we compare N e in short-lived, density-dependent animal populations with different mating systems. We study the impact of a fluctuating, density-dependent sex ratio and consider both a stable and a fluctuating environment. We find a negative relationship between annual N e /N and adult population size N due to density dependence, suggesting that loss of genetic variation is reduced at small densities. The magnitude of this decrease was affected by mating system and life history. A male-biased, density-dependent sex ratio reduces the rate of genetic drift compared to an equal, density-independent sex ratio, but a stochastic change towards male bias reduces the N e /N ratio. Environmental stochasticity amplifies temporal fluctuations in population size and is thus vital to consider in estimation of effective population sizes over longer time periods. Our results on the reduced loss of genetic variation at small densities, particularly in polygamous populations, indicate that density regulation may facilitate adaptive evolution at small population sizes. © 2017 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2017 European Society For Evolutionary Biology.

Precision of Four Acoustic Bone Measurement Devices

NASA Technical Reports Server (NTRS)

Miller, Christopher; Rianon, Nahid; Feiveson, Alan; Shackelford, Linda; LeBlanc, Adrian

2000-01-01

Though many studies have quantified the precision of various acoustic bone measurement devices, it is difficult to directly compare the results among the studies, because they used disparate subject pools, did not specify the estimation methodology, or did not use consistent definitions for various precision characteristics. In this study, we used a repeated measures design protocol to directly determine the precision characteristics of four acoustic bone measurement devices: the Mechanical Response Tissue Analyzer (MRTA), the UBA-575+, the SoundScan 2000 (S2000), and the Sahara Ultrasound Bone Analyzer. Ten men and ten women were scanned on all four devices by two different operators at five discrete time points: Week 1, Week 2, Week 3, Month 3 and Month 6. The percent coefficient of variation (%CV) and standardized coefficient of variation were computed for the following precision characteristics: interoperator effect, operator-subject interaction, short-term error variance, and long-term drift. The MRTA had high interoperator errors for its ulnar and tibial stiffness measures and a large long-term drift in its tibial stiffness measurement. The UBA-575+ exhibited large short-term error variances and long-term drift for all three of its measurements. The S2000's tibial speed of sound measurement showed a high short-term error variance and a significant operator-subject interaction but very good values (less than 1%) for the other precision characteristics. The Sahara seemed to have the best overall performance, but was hampered by a large %CV for short-term error variance in its broadband ultrasound attenuation measure.

Winds and tides of Ligeia Mare, with application to the drift of the proposed time TiME (Titan Mare Explorer) capsule

NASA Astrophysics Data System (ADS)

Lorenz, Ralph D.; Tokano, Tetsuya; Newman, Claire E.

2012-01-01

We use two independent General Circulation Models (GCMs) to estimate surface winds at Titan’s Ligeia Mare (78° N, 250° W), motivated by a proposed mission to land a floating capsule in this ∼500 km hydrocarbon sea. The models agree on the overall magnitude (∼0.5-1 m/s) and seasonal variation (strongest in summer) of windspeeds, but details of seasonal and diurnal variation of windspeed and direction differ somewhat, with the role of surface exchanges being more significant than that of gravitational tides in the atmosphere. We also investigate the tidal dynamics in the sea using a numerical ocean dynamics model: assuming a rigid lithosphere, the tidal amplitude is up to ∼0.8 m. Tidal currents are overall proportional to the reciprocal of depth-with an assumed central depth of 300 m, the characteristic tidal currents are ∼1 cm/s, with notable motions being a slosh between Ligeia’s eastern and western lobes, and a clockwise flow pattern. We find that a capsule will drift at approximately one tenth of the windspeed, unless measures are adopted to augment the drag areas above or below the waterline. Thus motion of a floating capsule is dominated by the wind, and is likely to be several km per Earth day, a rate that will be readily measured from Earth by radio navigation methods. In some instances, the wind vector rotates diurnally such that the drift trajectory is epicyclic.

Effects of ULF waves on local and global energetic particles: Particle energy and species dependences

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, L. Y.; Yu, J.; Cao, J. B.

After 06:13 UT on 24 August 2005, an interplanetary shock triggers large-amplitude ultralow-frequency (ULF) waves (|δB| ≥ 15 nT) in the Pc4–Pc5 wave band (1.6–9 mHz) near the noon geosynchronous orbit (6.6 RE). The local and global effects of ULF waves on energetic particles are observed by five Los Alamos National Laboratory satellites at different magnetic local times. The large-amplitude ULF waves cause the synchronous oscillations of energetic electrons and protons (≥75 keV) at the noon geosynchronous orbit. When the energetic particles have a negative phase space density radial gradient, they undergo rapid outward radial diffusion and loss in themore » wave activity region. In the particle drift paths without strong ULF waves, only the rapidly drifting energetic electrons (≥225 keV) display energy-dispersive oscillations and flux decays, whereas the slowly drifting electrons (<225 keV) and protons (75–400 keV) have no ULF oscillation and loss feature. When the dayside magnetopause is compressed to the geosynchronous orbit, most of energetic electrons and protons are rapidly lost because of open drift trajectories. Furthermore, the global and multicomposition particle measurements demonstrate that the effect of ULF waves on nonlocal particle flux depends on the particle energy and species, whereas magnetopause shadowing effect is independent of the energetic particle species. For the rapidly drifting outer radiation belt particles (≥225 keV), nonlocal particle loss/acceleration processes could also change their fluxes in the entire drift trajectory in the absence of “ Dst effect” and substorm injection.« less

Effects of ULF waves on local and global energetic particles: Particle energy and species dependences

DOE PAGES

Li, L. Y.; Yu, J.; Cao, J. B.; ...

2016-11-05

After 06:13 UT on 24 August 2005, an interplanetary shock triggers large-amplitude ultralow-frequency (ULF) waves (|δB| ≥ 15 nT) in the Pc4–Pc5 wave band (1.6–9 mHz) near the noon geosynchronous orbit (6.6 RE). The local and global effects of ULF waves on energetic particles are observed by five Los Alamos National Laboratory satellites at different magnetic local times. The large-amplitude ULF waves cause the synchronous oscillations of energetic electrons and protons (≥75 keV) at the noon geosynchronous orbit. When the energetic particles have a negative phase space density radial gradient, they undergo rapid outward radial diffusion and loss in themore » wave activity region. In the particle drift paths without strong ULF waves, only the rapidly drifting energetic electrons (≥225 keV) display energy-dispersive oscillations and flux decays, whereas the slowly drifting electrons (<225 keV) and protons (75–400 keV) have no ULF oscillation and loss feature. When the dayside magnetopause is compressed to the geosynchronous orbit, most of energetic electrons and protons are rapidly lost because of open drift trajectories. Furthermore, the global and multicomposition particle measurements demonstrate that the effect of ULF waves on nonlocal particle flux depends on the particle energy and species, whereas magnetopause shadowing effect is independent of the energetic particle species. For the rapidly drifting outer radiation belt particles (≥225 keV), nonlocal particle loss/acceleration processes could also change their fluxes in the entire drift trajectory in the absence of “ Dst effect” and substorm injection.« less

Electron transport parameters in NF3

NASA Astrophysics Data System (ADS)

Lisovskiy, V.; Yegorenkov, V.; Ogloblina, P.; Booth, J.-P.; Martins, S.; Landry, K.; Douai, D.; Cassagne, V.

2014-03-01

We present electron transport parameters (the first Townsend coefficient, the dissociative attachment coefficient, the fraction of electron energy lost by collisions with NF3 molecules, the average and characteristic electron energy, the electron mobility and the drift velocity) in NF3 gas calculated from published elastic and inelastic electron-NF3 collision cross-sections using the BOLSIG+ code. Calculations were performed for the combined RB (Rescigno 1995 Phys. Rev. E 52 329, Boesten et al 1996 J. Phys. B: At. Mol. Opt. Phys. 29 5475) momentum-transfer cross-section, as well as for the JB (Joucoski and Bettega 2002 J. Phys. B: At. Mol. Opt. Phys. 35 783) momentum-transfer cross-section. In addition, we have measured the radio frequency (rf) breakdown curves for various inter-electrode gaps and rfs, and from these we have determined the electron drift velocity in NF3 from the location of the turning point in these curves. These drift velocity values are in satisfactory agreement with those calculated by the BOLSIG+ code employing the JB momentum-transfer cross-section.

Numerical analysis of azimuthal rotating spokes in a crossed-field discharge plasma

NASA Astrophysics Data System (ADS)

Kawashima, R.; Hara, K.; Komurasaki, K.

2018-03-01

Low-frequency rotating spokes are obtained in a cross-field discharge plasma using two-dimensional numerical simulations. A particle-fluid hybrid model is used to model the plasma flow in a configuration similar to a Hall thruster. It has been reported that the drift-diffusion approximation for an electron fluid results in an ill-conditioned matrix when solving for the potential because of the differences in the electron mobilities across the magnetic field and in the direction of the E × B drift. In this paper, we employ a hyperbolic approach that enables stable calculation, namely, better iterative convergence of the electron fluid model. Our simulation results show a coherent rotating structure propagating in the E × B direction with a phase velocity of 2500 m s‑1, which agrees with experimental data. The phase velocity obtained from the numerical simulations shows good agreement with that predicted by the dispersion relation of the gradient drift instability.

Observation of the solar eclipse of 20 March 2015 at the Pruhonice station

NASA Astrophysics Data System (ADS)

Mošna, Zbyšek; Boška, Josef; Knížová, Petra Koucká; Šindelářová, Tereza; Kouba, Daniel; Chum, Jaroslav; Rejfek, Luboš; Potužníková, Kateřina; Arikan, Feza; Toker, Cenk

2018-06-01

Response of the atmosphere to the Solar Eclipse on 20 March 2015 is described for mid-latitude region of Czech Republic. For the first time we show join analysis using Digisonde vertical sounding, manually processed Digisonde drift measurement, and Continuous Doppler Sounding for the solar eclipse study. The critical frequencies foE, foF1 and foF2 show changes with different time offset connected to the solar eclipse. Digisonde drift measurement shows significant vertical plasma drifts in F2 region deviating from daily mean course with amplitudes reaching 15-20 m/s corresponding to the time of solar eclipse. Continuous Doppler Sounding shows propagation of waves in the NE direction with velocities between 70 and 100 m/s with a peak 30 min after first contact. We observed increased and persistent wave activity at heights between 150 and 250 km at time about 20-40 min after beginning of SE with central period 65 min.

High allele frequency of CYP2C9*3 (rs1057910) in a Negrito's subtribe population in Malaysia; Aboriginal people of Jahai.

PubMed

Rosdi, Rasmaizatul Akma; Mohd Yusoff, Narazah; Ismail, Rusli; Soo Choon, Tan; Saleem, Mohamed; Musa, Nurfadhlina; Yusoff, Surini

2016-09-01

CYP2C9 gene polymorphisms modulate inter-individual variations in the human body's responses to various endogenous and exogenous drug substrates. To date, little is known about the CYP2C9 gene polymorphisms among the aboriginal populations of the world, including those in Malaysia. To characterise and compare the CYP2C9 polymorphisms (CYP2C9*2, CYP2C9*3, CYP2C9*4 and CYP2C9*5) between one of Malaysia's aboriginal populations, Jahai, with the national major ethnic, Malay. To also compare the allele frequencies from these two populations with available data of other aboriginal populations around the world. The extracted DNA of 155 Jahais and 183 Malays was genotyped for CYP2C9 polymorphisms using a nested multiplex allele-specific polymerase chain reaction technique. The results were confirmed by DNA direct sequencing. Genotyping results revealed that CYP2C9*2, CYP2C9*4 and CYP2C9*5 were absent in Jahais, while only the latter two were absent in Malays. The CYP2C9*3 allelic frequency in Jahais was 36.2%, making them the most frequent carriers of the allele thus far reported in any ethnic group from Southeast Asia. The high frequency of CYP2C9*3 and the absence of CYP2C9*2 in Jahais suggest that genetic drift may be occurring in this ethnic group. This is the first study to determine the CYP2C9 polymorphisms in an aboriginal population in Malaysia.

Spectrally narrow, long-term stable optical frequency reference based on a Eu3+:Y2SiO5 crystal at cryogenic temperature.

PubMed

Chen, Qun-Feng; Troshyn, Andrei; Ernsting, Ingo; Kayser, Steffen; Vasilyev, Sergey; Nevsky, Alexander; Schiller, Stephan

2011-11-25

Using an ultrastable continuous-wave laser at 580 nm we performed spectral hole burning of Eu(3+):Y(2)SiO(5) at a very high spectral resolution. The essential parameters determining the usefulness as a macroscopic frequency reference, linewidth, temperature sensitivity, and long-term stability, were characterized using a H-maser stabilized frequency comb. Spectral holes with a linewidth as low as 6 kHz were observed and the upper limit of the drift of the hole frequency was determined to be 5±3 mHz/s. We discuss the necessary requirements for achieving ultrahigh stability in laser frequency stabilization to these spectral holes.

Distributed sensing of ionospheric irregularities with a GNSS receiver array

NASA Astrophysics Data System (ADS)

Su, Yang; Datta-Barua, Seebany; Bust, Gary S.; Deshpande, Kshitija B.

2017-08-01

We present analysis methods for studying the structuring and motion of ionospheric irregularities at the subkilometer scale sizes that produce L band scintillations. Spaced-receiver methods are used for Global Navigation Satellite System (GNSS) receivers' phase measurements over approximately subkilometer to kilometer length baselines for the first time. The quantities estimated by these techniques are plasma drift velocity, diffraction anisotropy magnitude and orientation, and characteristic velocity. Uncertainties are quantified by ensemble simulation of noise on the phase signals carried through to the observations of the spaced-receiver linear system. These covariances are then propagated through to uncertainties on drifts through linearization about the estimated values of the state. Five receivers of SAGA, the Scintillation Auroral Global Positioning System (GPS) Array, provide 100 Hz power and phase data for each channel at L1 frequency. The array is sited in the auroral zone at Poker Flat Research Range, Alaska. A case study of a single scintillating satellite observed by the array is used to demonstrate the spaced-receiver and uncertainty estimation process. A second case study estimates drifts as measured by multiple scintillating channels. These scintillations are correlated with auroral activity, based on all-sky camera images. Measurements and uncertainty estimates made over a 30 min period are compared to a collocated incoherent scatter radar and show good agreement in horizontal drift speed and direction during periods of scintillation for which the characteristic velocity is less than the drift velocity.

Drift mode accelerometry for spaceborne gravity measurements

NASA Astrophysics Data System (ADS)

Conklin, John W.

2015-11-01

A drift mode accelerometer is a precision instrument for spacecraft that overcomes much of the acceleration noise and readout dynamic range limitations of traditional electrostatic accelerometers. It has the potential of achieving acceleration noise performance similar to that of drag-free systems over a restricted frequency band without the need for external drag-free control or continuous spacecraft propulsion. Like traditional accelerometers, the drift mode accelerometer contains a high-density test mass surrounded by an electrode housing, which can control and sense all six degrees of freedom of the test mass. Unlike traditional accelerometers, the suspension system is operated with a low duty cycle so that the limiting suspension force noise only acts over brief, known time intervals, which can be neglected in the data analysis. The readout is performed using a laser interferometer which is immune to the dynamic range limitations of even the best voltage references typically used to determine the inertial acceleration of electrostatic accelerometers. The drift mode accelerometer is a novel offshoot of the like-named operational mode of the LISA Pathfinder spacecraft, in which its test mass suspension system is cycled on and off to estimate the acceleration noise associated with the front-end electronics. This paper presents the concept of a drift mode accelerometer, describes the operation of such a device, develops models for its performance with respect to non-drag-free satellite geodesy and gravitational wave missions, and discusses plans for testing the performance of a prototype sensor in the laboratory using torsion pendula.

Spectral-Temporal Evolution of Low-Frequency Pulsations in the Microwave Radiation of Solar Flares

NASA Astrophysics Data System (ADS)

Zaitsev, V. V.; Kislyakov, A. G.; Urpo, S.; Stepanov, A. V.; Shkelev, E. I.

2003-10-01

Low-frequency pulsations of 22 and 37 GHz microwave radiation detected during solar flares are analyzed. Several microwave bursts observed at the Metsähovi Radio Observatory are studied with time resolutions of 100 and 50 ms. A fast Fourier transformation with a sliding window and the Wigner-Ville method are used to obtain frequency-time diagrams for the low-frequency pulsations, which are interpreted as natural oscillations of coronal magnetic loops; the dynamical spectra of the pulsations are synthesized for the first time. Three types of low-frequency fluctuations modulating the flare microwave radiation can be distinguished in the observations. First, there are fast and slow magneto-acoustic oscillations with periods of 0.5 0.8 s and 200 280 s, respectively. The fast magneto-acoustic oscillations appear as trains of narrow-band signals with durations of 100 200 s, a positive frequency drift dν/dt=0.25 MHz/min, and frequency splitting δν=0.01 0.05 Hz. Second, there are natural oscillations of the coronal magnetic loops as equivalent electrical circuits. These oscillations have periods of 0.5 10 s and positive or negative frequency drift rates dν/dt=8×10-3 Hz/min or dν/dt=-1.3×10-2 Hz/min, depending on the phase of the radio outburst. Third, there are modulations of the microwave radiation by short periodic pulses with a period of 20 s. The dynamical spectra of the low-frequency pulsations supply important information about the parameters of the magnetic loops: the ratio of the loop radius to its length r/L≈0.1, the plasma parameter β≈10-3, the ratio of the plasma densities outside and inside the loop ρe/ρi≈10-2, and the electrical current flowing along the loop I≈1012 A.

ICP measurement accuracy: the effect of temperature drift. Design of a laboratory test for assessment of ICP transducers.

PubMed

Morgalla, M H; Mettenleiter, H; Katzenberger, T

1999-01-01

Intracranial pressure (ICP) monitoring has become the mainstay of multimodal neuromonitoring of comatous patients after head injury. In the presence of rising ICP and faced with pressures, difficult to control, aggressive measures, such as hypothermia may be used. The ICP readings should not be influenced by temperature changes. A laboratory test was designed to simulate temperature variations between 20 degrees C and 45 degrees C at different pressure levels under physiological conditions. Five types of transducers were examined: Epidyn Braun Melsungen, ICT/B-Titan Gaeltec, Camino-OLM-110-4B, Codman MicroSensor ICP-Transducer, Neurovent ICP transducer Rehau Ag+Co. Tests were performed at 6 different pressure levels between 0 mmHg and 50 mmHg. The results show very low drifts of less than 0.15 mmHg degree C-1 for Codman, Epidyn and Neurovent. Gaeltec and Camino exhibited higher drifts of 0.18 mmHg and 0.2 mmHg degree C-1 respectively. Within the temperature range from 35 degrees C to 42 degrees C all probes tested show insignificant temperature drift. Whether these results also apply to other types of transducers needs further evaluation. Problems and requirements related to the design of a laboratory test for the in vitro assessment of ICP transducers are discussed in detail.

NEW EVIDENCE FOR CHARGE-SIGN-DEPENDENT MODULATION DURING THE SOLAR MINIMUM OF 2006 TO 2009

DOE Office of Scientific and Technical Information (OSTI.GOV)

Di Felice, V.; Munini, R.; Vos, E. E.

The PAMELA space experiment, in orbit since 2006, has measured cosmic rays (CRs) through the most recent period of minimum solar activity with the magnetic field polarity as A  < 0. During this entire time, galactic electrons and protons have been detected down to 70 MV and 400 MV, respectively, and their differential variation in intensity with time has been monitored with unprecedented accuracy. These observations are used to show how differently electrons and protons responded to the quiet modulation conditions that prevailed from 2006 to 2009. It is well known that particle drifts, as one of four major mechanisms for the solarmore » modulation of CRs, cause charge-sign-dependent solar modulation. Periods of minimum solar activity provide optimal conditions in which to study these drift effects. The observed behavior is compared to the solutions of a three-dimensional model for CRs in the heliosphere, including drifts. The numerical results confirm that the difference in the evolution of electron and proton spectra during the last prolonged solar minimum is attributed to a large extent to particle drifts. We therefore present new evidence of charge-sign-dependent solar modulation, with a perspective on its peculiarities for the observed period from 2006 to 2009.« less

Geographical and temporal flexibility in the response to crosswinds by migrating raptors.

PubMed

Klaassen, Raymond H G; Hake, Mikael; Strandberg, Roine; Alerstam, Thomas

2011-05-07

Wind and ocean currents may potentially have important effects on travelling animals, as an animal which does not respond to lateral flow will be drifted from its intended direction of movement. By analysing daily movements of migrating ospreys Pandion haliaetus and marsh harriers Circus aeruginosus, as recorded by satellite telemetry, in relation to global wind data, we showed that these raptors allow on average 47 per cent drift. Furthermore, our analyses revealed significant geographical and temporal variation in the response to crosswinds. During some parts of the migration, the birds drifted and in other parts they compensated or even overcompensated. In some regions, the response of marsh harriers depended on the wind direction. They drifted when the wind came from one side and (over)compensated when the wind came from the opposite side, and this flexible response was different in different geographical regions. These results suggest that migrating raptors modulate their response to crosswinds at different places and times during their travels and show that individual birds use a much more varied repertoire of behavioural responses to wind than hitherto assumed. Our results may also explain why contrasting and variable results have been obtained in previous studies of the effect of wind on bird migration.

Geographical and temporal flexibility in the response to crosswinds by migrating raptors

PubMed Central

Klaassen, Raymond H. G.; Hake, Mikael; Strandberg, Roine; Alerstam, Thomas

2011-01-01

Wind and ocean currents may potentially have important effects on travelling animals, as an animal which does not respond to lateral flow will be drifted from its intended direction of movement. By analysing daily movements of migrating ospreys Pandion haliaetus and marsh harriers Circus aeruginosus, as recorded by satellite telemetry, in relation to global wind data, we showed that these raptors allow on average 47 per cent drift. Furthermore, our analyses revealed significant geographical and temporal variation in the response to crosswinds. During some parts of the migration, the birds drifted and in other parts they compensated or even overcompensated. In some regions, the response of marsh harriers depended on the wind direction. They drifted when the wind came from one side and (over)compensated when the wind came from the opposite side, and this flexible response was different in different geographical regions. These results suggest that migrating raptors modulate their response to crosswinds at different places and times during their travels and show that individual birds use a much more varied repertoire of behavioural responses to wind than hitherto assumed. Our results may also explain why contrasting and variable results have been obtained in previous studies of the effect of wind on bird migration. PMID:20980299

Drifts, currents, and power scrape-off width in SOLPS-ITER modeling of DIII-D

DOE PAGES

Meier, E. T.; Goldston, R. J.; Kaveeva, E. G.; ...

2016-12-27

The effects of drifts and associated flows and currents on the width of the parallel heat flux channel (λ q) in the tokamak scrape-off layer (SOL) are analyzed using the SOLPS-ITER 2D fluid transport code. Motivation is supplied by Goldston’s heuristic drift (HD) model for λ q, which yields the same approximately inverse poloidal magnetic field dependence seen in multi-machine regression. The analysis, focusing on a DIII-D H-mode discharge, reveals HD-like features, including comparable density and temperature fall-off lengths in the SOL, and up-down ion pressure asymmetry that allows net cross-separatrix ion magnetic drift flux to exceed net anomalous ionmore » flux. In experimentally relevant high-recycling cases, scans of both toroidal and poloidal magnetic field (B tor and B pol) are conducted, showing minimal λ q dependence on either component of the field. Insensitivity to B tor is expected, and suggests that SOLPS-ITER is effectively capturing some aspects of HD physics. Absence of λ q dependence on B pol, however, is inconsistent with both the HD model and experimental results. As a result, the inconsistency is attributed to strong variation in the parallel Mach number, which violates one of the premises of the HD model.« less

ELF wave production by an electron beam emitting rocket system and its suppression on auroral field lines - Evidence for Alfven and drift waves

NASA Astrophysics Data System (ADS)

Winckler, J. R.; Erickson, K. N.; Abe, Y.; Steffen, J. E.; Malcolm, P. R.

1985-07-01

Orthogonal probes on a free-flying plasma diagnostics payload are used to study ELF electric disturbances in the auroral ionosphere that are due to the injection of powerful electron beams. Frequency spectrograms are presented for various pitch angles, pulsing characteristics, and other properties of the injected beams; the large scale DC ionospheric convection electric field is measured, together with auroral particle precipitation, visual auroral forms, and ionospheric parameters. In view of the experimental results obtained, it is postulated that the observed ELF waves are in the Alfven and drift modes, and are generated by the positive vehicle potential during beam injection.

Recombination Processes and Nonlinear Markov Chains.

PubMed

Pirogov, Sergey; Rybko, Alexander; Kalinina, Anastasia; Gelfand, Mikhail

2016-09-01

Bacteria are known to exchange genetic information by horizontal gene transfer. Since the frequency of homologous recombination depends on the similarity between the recombining segments, several studies examined whether this could lead to the emergence of subspecies. Most of them simulated fixed-size Wright-Fisher populations, in which the genetic drift should be taken into account. Here, we use nonlinear Markov processes to describe a bacterial population evolving under mutation and recombination. We consider a population structure as a probability measure on the space of genomes. This approach implies the infinite population size limit, and thus, the genetic drift is not assumed. We prove that under these conditions, the emergence of subspecies is impossible.

2.32 THz quantum cascade laser frequency-locked to the harmonic of a microwave synthesizer source.

PubMed

Danylov, Andriy A; Light, Alexander R; Waldman, Jerry; Erickson, Neal R; Qian, Xifeng; Goodhue, William D

2012-12-03

Frequency stabilization of a THz quantum cascade laser (QCL) to the harmonic of a microwave source has been accomplished using a Schottky diode waveguide mixer designed for harmonic mixing. The 2.32 THz, 1.0 milliwatt CW QCL is coupled into the signal port of the mixer and a 110 GHz signal, derived from a harmonic of a microwave synthesizer, is coupled into the IF port. The difference frequency between the 21st harmonic of 110 GHz and the QCL is used in a discriminator to adjust the QCL bias current to stabilize the frequency. The short-term frequency jitter is reduced from 550 kHz to 4.5 kHz (FWHM) and the long-term frequency drift is eliminated. This performance is compared to that of several other THz QCL frequency stabilization techniques.

Quantification of the precipitation loss of radiation belt electrons observed by SAMPEX

NASA Astrophysics Data System (ADS)

Tu, Weichao; Selesnick, Richard; Li, Xinlin; Looper, Mark

2010-07-01

Based on SAMPEX/PET observations, the rates and the spatial and temporal variations of electron loss to the atmosphere in the Earth's radiation belt were quantified using a drift diffusion model that includes the effects of azimuthal drift and pitch angle diffusion. The measured electrons by SAMPEX can be distinguished as trapped, quasi-trapped (in the drift loss cone), and precipitating (in the bounce loss cone). The drift diffusion model simulates the low-altitude electron distribution from SAMPEX. After fitting the model results to the data, the magnitudes and variations of the electron lifetime can be quantitatively determined based on the optimum model parameter values. Three magnetic storms of different magnitudes were selected to estimate the various loss rates of ˜0.5-3 MeV electrons during different phases of the storms and at L shells ranging from L = 3.5 to L = 6.5 (L represents the radial distance in the equatorial plane under a dipole field approximation). The storms represent a small storm, a moderate storm from the current solar minimum, and an intense storm right after the previous solar maximum. Model results for the three individual events showed that fast precipitation losses of relativistic electrons, as short as hours, persistently occurred in the storm main phases and with more efficient loss at higher energies over wide range of L regions and over all the SAMPEX-covered local times. In addition to this newly discovered common feature of the main phase electron loss for all the storm events and at all L locations, some other properties of the electron loss rates, such as the local time and energy dependence that vary with time or locations, were also estimated and discussed. This method combining model with the low-altitude observations provides direct quantification of the electron loss rate, a prerequisite for any comprehensive modeling of the radiation belt electron dynamics.

Quantification of the Precipitation Loss of Radiation Belt Electrons Observed by SAMPEX

NASA Astrophysics Data System (ADS)

Tu, W.; Selesnick, R. S.; Li, X.; Looper, M. D.

2009-12-01

Based on SAMPEX/PET observations, the rates and the spatial and temporal variations of electron loss to the atmosphere in the Earth’s radiation belt were quantified using a Drift-Diffusion model that includes the effects of azimuthal drifts and pitch angle diffusion. The measured electrons detected by SAMPEX can be distinguished as trapped, quasi-trapped (in the drift loss cone), and precipitating (in the bounce loss cone). The Drift-Diffusion model simulates the low-altitude electron distribution from SAMPEX. After fitting the model results to the data, the magnitudes and variations of the electron lifetime can be quantitatively determined based on the optimum model parameter values. Three magnetic storms of different types of magnitude were selected to estimate the various loss rates of ~0.5 to 3 MeV electrons during different phases of the storm and at L shells ranging from L=3.5 to L=6.5 (L represents the radial distance in the equatorial plane under a dipole field approximation). They are a small storm and a moderate storm in the current solar minimum and an intense storm right after the previous solar maximum. Model results for the three individual events showed that fast precipitation losses of energetic radiation belt electrons, as short as hours, persistently occurred in the storm main phases and with more efficient loss at higher energies, over wide range of L regions and over all the SAMPEX covered local times. In addition to this newly discovered common feature of the main phase electron lifetimes for all the storm events and at all L locations, some other properties of the electron loss rates that vary with time or locations, were also estimated and discussed. This method combining model with the low-altitude observations provides direct quantification of the electron loss rate, a prerequisite for any comprehensive modeling of the radiation belt electron dynamics.

The effect of stimulus strength on binocular rivalry rate in healthy individuals: Implications for genetic, clinical and individual differences studies.

PubMed

Law, Phillip C F; Miller, Steven M; Ngo, Trung T

2017-11-01

Binocular rivalry (BR) occurs when conflicting images concurrently presented to corresponding retinal locations of each eye stochastically alternate in perception. Anomalies of BR rate have been examined in a range of clinical psychiatric conditions. In particular, slow BR rate has been proposed as an endophenotype for bipolar disorder (BD) to improve power in large-scale genome-wide association studies. Examining the validity of BR rate as a BD endophenotype however requires large-scale datasets (n=1000s to 10,000s), a standardized testing protocol, and optimization of stimulus parameters to maximize separation between BD and healthy groups. Such requirements are indeed relevant to all clinical psychiatric BR studies. Here we address the issue of stimulus optimization by examining the effect of stimulus parameter variation on BR rate and mixed-percept duration (MPD) in healthy individuals. We aimed to identify the stimulus parameters that induced the fastest BR rates with the least MPD. Employing a repeated-measures within-subjects design, 40 healthy adults completed four BR tasks using orthogonally drifting grating stimuli that varied in drift speed and aperture size. Pairwise comparisons were performed to determine modulation of BR rate and MPD by these stimulus parameters, and individual variation of such modulation was also assessed. From amongst the stimulus parameters examined, we found that 8cycles/s drift speed in a 1.5° aperture induced the fastest BR rate without increasing MPD, but that BR rate with this stimulus configuration was not substantially different to BR rate with stimulus parameters we have used in previous studies (i.e., 4cycles/s drift speed in a 1.5° aperture). In addition to contributing to stimulus optimization issues, the findings have implications for Levelt's Proposition IV of binocular rivalry dynamics and individual differences in such dynamics. Copyright © 2017 Elsevier Inc. All rights reserved.

Genetic perspectives on northern population cycles: bridging the gap between theory and empirical studies.

PubMed

Norén, Karin; Angerbjörn, Anders

2014-05-01

Many key species in northern ecosystems are characterised by high-amplitude cyclic population demography. In 1924, Charles Elton described the ecology and evolution of cyclic populations in a classic paper and, since then, a major focus has been the underlying causes of population cycles. Elton hypothesised that fluctuations reduced population genetic variation and influenced the direction of selection pressures. In concordance with Elton, present theories concern the direct consequences of population cycles for genetic structure due to the processes of genetic drift and selection, but also include feedback models of genetic composition on population dynamics. Most of these theories gained mathematical support during the 1970s and onwards, but due to methodological drawbacks, difficulties in long-term sampling and a complex interplay between microevolutionary processes, clear empirical data allowing the testing of these predictions are still scarce. Current genetic tools allow for estimates of genetic variation and identification of adaptive genomic regions, making this an ideal time to revisit this subject. Herein, we attempt to contribute towards a consensus regarding the enigma described by Elton almost 90 years ago. We present nine predictions covering the direct and genetic feedback consequences of population cycles on genetic variation and population structure, and review the empirical evidence. Generally, empirical support for the predictions was low and scattered, with obvious gaps in the understanding of basic population processes. We conclude that genetic variation in northern cyclic populations generally is high and that the geographic distribution and amount of diversity are usually suggested to be determined by various forms of context- and density-dependent dispersal exceeding the impact of genetic drift. Furthermore, we found few clear signatures of selection determining genetic composition in cyclic populations. Dispersal is assumed to have a strong impact on genetic structuring and we suggest that the signatures of other microevolutionary processes such as genetic drift and selection are weaker and have been over-shadowed by density-dependent dispersal. We emphasise that basic biological and demographical questions still need to be answered and stress the importance of extensive sampling, appropriate choice of tools and the value of standardised protocols. © 2013 The Authors. Biological Reviews © 2013 Cambridge Philosophical Society.

Dielectric studies on PVA/PVP blend polymer electrolyte films

NASA Astrophysics Data System (ADS)

Kumar, B. Ranjit; Basha, S. K. Shahenoor; Rao, M. C.

2018-05-01

Biodegradable blend polymer electrolytes of PVA/PVP with different wt% ratios of MgCl2.6H2O have been prepared using solution cast technique. Dielectric studies were performed on to the prepared films using HIOKI 3532-50 in the frequency range 5000 Hz - 50000 KHz. As increasing the frequency the dielectric constant gradually decreases and found to be high for the sample prepared at 30 wt%; this concludes that the drifting of ions is high giving raise to conductivity phenomenon.

Laser Scattering from the Dense Plasma Focus.

DTIC Science & Technology

plasma focus (DPF) illuminated by a pulse of laser light. Scattering was observable from 10 nanoseconds prior to arrival of the collapse on axis and for an additional 50 nanoseconds. The frequency spectrum is markedly asymmetric about the laser frequency, a feature which is inconsistent with spectral expectations based on thermal particle distributions even if particle drifts or waves excitations are included. A model is postulated which attributes the asymmetry to lateral displacement of scattering region from the axis of the focus. Analysis based on this model yields

Lunar tides in the Thermosphere-Ionosphere-Electrodynamics General Circulation Model

NASA Astrophysics Data System (ADS)

Stening, R. J.; Richmond, A. D.; Roble, R. G.

1999-01-01

Lunar semidiurnal tides are introduced at the lower boundary of the National Center for Atmospheric Research Thermosphere-Ionosphere-Electrodynamics General Circulation Model (TIEGCM). The tides are derived from the model of Vial and Forbes [1994] and interesting properties of these tides are found when they are subjected to Hough decomposition; there is considerable hemispherical antisymmetry in the September tides, and the March and September modal compositions are significantly different. A differencing method is used to isolate the lunar tidal effects in the TIEGCM, and these are compared with lunar tidal analyses of ionospheric data. The model reproduces the broad features of the lunar tide in foF2 (maximum frequency of the F region) with phase changes around 7° magnetic dip latitude during daytime. The model and data analysis both give variations of the amplitude and phase of the lunar tide with local time. Near the equator the variation of phase with local time changes with latitude as the equatorial anomaly develops during the day. Comparison between the model predictions and analyses of data at observatories at midlatitudes produces mixed results. Here the effects of the lunar components of both electrodynamic drifts and of neutral winds need to be taken into account. Several cases of day to night changes in the phase of the lunar tide in foF2 are noted. Large nighttime amplitudes of the lunar tide in hmF2 (height of the maximum density), more than 4 km, seem to be due to inphase action of the electrodynamic and neutral wind effects while during daytime they are out of phase. The lunar tide in the ratio of oxygen to nitrogen density [O]/[N2] is estimated and found to be of relatively minor importance. Amplitudes of the lunar tide in foF2 may be measured at more than 0.4 MHz at some local times, but the model values are less than this. Comparison is also made with ion drift measurements made by the San Marco D satellite. The several uncertainties which underlie this work are discussed in detail.

Theory comparison and numerical benchmarking on neoclassical toroidal viscosity torque

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Zhirui; Park, Jong-Kyu; Logan, Nikolas

Systematic comparison and numerical benchmarking have been successfully carried out among three different approaches of neoclassical toroidal viscosity (NTV) theory and the corresponding codes: IPEC-PENT is developed based on the combined NTV theory but without geometric simplifications [Park et al., Phys. Rev. Lett. 102, 065002 (2009)]; MARS-Q includes smoothly connected NTV formula [Shaing et al., Nucl. Fusion 50, 025022 (2010)] based on Shaing's analytic formulation in various collisionality regimes; MARS-K, originally computing the drift kinetic energy, is upgraded to compute the NTV torque based on the equivalence between drift kinetic energy and NTV torque [J.-K. Park, Phys. Plasma 18, 110702more » (2011)]. The derivation and numerical results both indicate that the imaginary part of drift kinetic energy computed by MARS-K is equivalent to the NTV torque in IPEC-PENT. In the benchmark of precession resonance between MARS-Q and MARS-K/IPEC-PENT, the agreement and correlation between the connected NTV formula and the combined NTV theory in different collisionality regimes are shown for the first time. Additionally, both IPEC-PENT and MARS-K indicate the importance of the bounce harmonic resonance which can greatly enhance the NTV torque when E×B drift frequency reaches the bounce resonance condition.« less

Fundamental mode of ultra-low frequency electrostatic dust-cyclotron surface waves in a magnetized complex plasma with drifting ions

NASA Astrophysics Data System (ADS)

Lee, Seungjun; Lee, Myoung-Jae

2012-10-01

The electrostatic dust-cyclotron (EDC) waves in a magnetized dusty plasma was reported that they could be excited by gravity in a collisional plasma [1]. Rosenberg suggested that EDC waves could be excited by ions drifting along the magnetic field in a collisional plasma containing dust grains with large thermal speeds [2]. The existing investigations, however, focus on EDC volume waves in which the boundary effects are not considered. In this work, we attempt to obtain some physical results concerning the fundamental mode of EDC surface wave and the stability of wave by utilizing a kinetic method. The EDC surface wave is assumed to propagate along an external magnetic field at the interface between the plasma and the vacuum. The plasma is comprised of drifting ions flowing along an external magnetic field. To derive the growth rate of surface waves, we employ the specular reflection boundary conditions. The EDC surface wave is found to be unstable when the ion drift velocity is larger than the phase velocity of the wave. In addition, the wave becomes to be more unstable if dust particles carry more negative charges.[4pt] [1] N. D'Angelo, Phys. Lett. A 323, 445 (2004).[0pt] [2] M. Rosenberg, Phys. Scr. 82, 035505 (2010).

Robust frequency stabilization of multiple spectroscopy lasers with large and tunable offset frequencies.

PubMed

Nevsky, A; Alighanbari, S; Chen, Q-F; Ernsting, I; Vasilyev, S; Schiller, S; Barwood, G; Gill, P; Poli, N; Tino, G M

2013-11-15

We have demonstrated a compact, robust device for simultaneous absolute frequency stabilization of three diode lasers whose carrier frequencies can be chosen freely relative to the reference. A rigid ULE multicavity block is employed, and, for each laser, the sideband locking technique is applied. A small lock error, computer control of frequency offset, wide range of frequency offset, simple construction, and robust operation are the useful features of the system. One concrete application is as a stabilization unit for the cooling and trapping lasers of a neutral-atom lattice clock. The device significantly supports and improves the clock's operation. The laser with the most stringent requirements imposed by this application is stabilized to a line width of 70 Hz, and a residual frequency drift less than 0.5 Hz/s. The carrier optical frequency can be tuned over 350 MHz while in lock.

[Genetic ecological monitoring in human populations: heterozygosity, mtDNA haplotype variation, and genetic load].

PubMed

Balanovskiĭ, O P; Koshel', S M; Zaporozhchenko, V V; Pshenichnov, A S; Frolova, S A; Kuznetsova, M A; Baranova, E E; Teuchezh, I E; Kuznetsova, A A; Romashkina, M V; Utevskaia, O M; Churnosov, M I; Villems, R; Balanovskaia, E V

2011-11-01

Yu. P. Altukhov suggested that heterozygosity is an indicator of the state of the gene pool. The idea and a linked concept of genetic ecological monitoring were applied to a new dataset on mtDNA variation in East European ethnic groups. Haplotype diversity (an analog of the average heterozygosity) was shown to gradually decrease northwards. Since a similar trend is known for population density, interlinked changes were assumed for a set of parameters, which were ordered to form a causative chain: latitude increases, land productivity decreases, population density decreases, effective population size decreases, isolation of subpopulations increases, genetic drift increases, and mtDNA haplotype diversity decreases. An increase in genetic drift increases the random inbreeding rate and, consequently, the genetic load. This was confirmed by a significant correlation observed between the incidence of autosomal recessive hereditary diseases and mtDNA haplotype diversity. Based on the findings, mtDNA was assumed to provide an informative genetic system for genetic ecological monitoring; e.g., analyzing the ecology-driven changes in the gene pool.

Perspective: tipping the scales: search for drifting constants from molecular spectra.

PubMed

Jansen, Paul; Bethlem, Hendrick L; Ubachs, Wim

2014-01-07

Transitions in atoms and molecules provide an ideal test ground for constraining or detecting a possible variation of the fundamental constants of nature. In this perspective, we review molecular species that are of specific interest in the search for a drifting proton-to-electron mass ratio μ. In particular, we outline the procedures that are used to calculate the sensitivity coefficients for transitions in these molecules and discuss current searches. These methods have led to a rate of change in μ bounded to 6 × 10(-14)/yr from a laboratory experiment performed in the present epoch. On a cosmological time scale, the variation is limited to ∣Δμ∕μ∣ < 10(-5) for look-back times of 10-12× 10(9) years and to ∣Δμ∕μ∣ < 10(-7) for look-back times of 7× 10(9) years. The last result, obtained from high-redshift observation of methanol, translates into μ̇/μ=(1.4±1.4)×10(-17)/yr if a linear rate of change is assumed.

Development of a Self-Calibrated MEMS Gyrocompass for North-Finding and Tracking

NASA Astrophysics Data System (ADS)

Prikhodko, Igor P.

This Ph.D. dissertation presents development of a microelectromechanical (MEMS) gyrocompass for north-finding and north-tracking applications. The central part of this work enabling these applications is control and self-calibration architectures for drift mitigation over thermal environments, validated using a MEMS quadruple mass gyroscope. The thesis contributions are the following: • Adapted and implemented bias and scale-factor drifts compensation algorithm relying on temperature self-sensing for MEMS gyroscopes with high quality factors. The real-time self-compensation reduced a total bias error to 2 °/hr and a scale-factor error to 500 ppm over temperature range of 25 °C to 55 °C (on par with the state-of-the-art). • Adapted and implemented a scale-factor self-calibration algorithm previously employed for macroscale hemispherical resonator gyroscope to MEMS Coriolis vibratory gyroscopes. An accuracy of 100 ppm was demonstrated by simultaneously measuring the true and estimated scale-factors over temperature variations (on par with the state-of-the art). • Demonstrated north-finding accuracy satisfying a typical mission requirement of 4 meter target location error at 1 kilometer stand-off distance (on par with a GPS accuracy). Analyzed north-finding mechanizations trade-offs for MEMS vibratory gyroscopes and demonstrated measurements of the Earth's rotation (15 °/hr). • Demonstrated, for the first time, an angle measuring MEMS gyroscope operation for north-tracking applications in a +/-500 °/s rate range and 100 Hz bandwidth, eliminating both bandwidth and range constraints of conventional open-loop Coriolis vibratory gyroscopes. • Investigated hypothesis that surface-tension driven glass-blowing microfabrication can create highly spherical shells for 3-D MEMS. Without any trimming or tuning of the natural frequencies, a 1 MHz glass-blown 3-D microshell resonator demonstrated a 0.63 % frequency mismatch between two degenerate 4-node wineglass modes. • Multi-axis rotation detection for nuclear magnetic resonance (NMR) gyroscope was proposed and developed. The analysis of cross-axis sensitivities for NMR gyroscope was performed. The framework for the analysis of NMR gyroscope dynamics for both open loop and closed loop modes of operation was developed.

Host association influences variation at salivary protein genes in the bat ectoparasite Cimex adjunctus.

PubMed

Talbot, Benoit; Vonhof, Maarten J; Broders, Hugh G; Fenton, Brock; Keyghobadi, Nusha

2018-05-01

Parasite-host relationships create strong selection pressures that can lead to adaptation and increasing specialization of parasites to their hosts. Even in relatively loose host-parasite relationships, such as between generalist ectoparasites and their hosts, we may observe some degree of specialization of parasite populations to one of the multiple potential hosts. Salivary proteins are used by blood-feeding ectoparasites to prevent hemostasis in the host and maximize energy intake. We investigated the influence of association with specific host species on allele frequencies of salivary protein genes in Cimex adjunctus, a generalist blood-feeding ectoparasite of bats in North America. We analysed two salivary protein genes: an apyrase, which hydrolyses ATP at the feeding site and thus inhibits platelet aggregation, and a nitrophorin, which brings nitrous oxide to the feeding site, inhibiting platelet aggregation and vasoconstriction. We observed more variation at both salivary protein genes among parasite populations associated with different host species than among populations from different spatial locations associated with the same host species. The variation in salivary protein genes among populations on different host species was also greater than expected under a neutral scenario of genetic drift and gene flow. Finally, host species was an important predictor of allelic divergence in genotypes of individual C. adjunctus at both salivary protein genes. Our results suggest differing selection pressures on these two salivary protein genes in C. adjunctus depending on the host species. © 2018 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2018 European Society For Evolutionary Biology.

Breeding system and demography shape population genetic structure across ecological and climatic zones in the African freshwater snail, Bulinus forskalii (Gastropoda, Pulmonata), intermediate host for schistosomes.

PubMed

Gow, J L; Noble, L R; Rollinson, D; Mimpfoundi, R; Jones, C S

2004-11-01

The role of breeding system and population bottlenecks in shaping the distribution of neutral genetic variation among populations inhabiting patchily distributed, ephemeral water bodies was examined for the hermaphroditic freshwater snail Bulinus forskalii, intermediate host for the medically important trematode Schistosoma guineensis. Levels of genetic variation at 11 microsatellite loci were assessed for 600 individuals sampled from 19 populations that span three ecological and climatic zones (ecozones) in Cameroon, West Africa. Significant heterozygote deficiencies and linkage disequilibria indicated very high selfing rates in these populations. Despite this and the large genetic differentiation detected between populations, high levels of genetic variation were harboured within these populations. The high level of gene flow inferred from assignment tests may be responsible for this pattern. Indeed, metapopulation dynamics, including high levels of gene flow as well as extinction/contraction and recolonization events, are invoked to account for the observed population structuring, which was not a consequence of isolation-by-distance. Because B. forskalii populations inhabiting the northern, Sahelian area are subject to more pronounced annual cycles of drought and flood than the southern equatorial ones, they were expected to be subject to population bottlenecks of increased frequency and severity and, therefore, show reduced genetic variability and elevated population differentiation. Contrary to predictions, the populations inhabiting the most northerly ecozone exhibited higher genetic diversity and lower genetic differentiation than those in the most southerly one, suggesting that elevated gene flow in this region is counteracting genetic drift.

Hard X-ray and high-frequency decimetric radio observations of the 4 April 2002 solar flare

NASA Astrophysics Data System (ADS)

Kane, S. R.; Sawant, H. S.; Cecatto, J. R.; Andrade, M. C.; Fernandes, F. C. R.; Karlicky, M.; Meszarosova, H.

Hard X-ray and high frequency decimetric type III radio bursts have been observed in association with the soft X-raysolar flare (GOES class M 6.1) on 4 April 2002 (˜1532 UT). The flare apparently occurred ˜ 6 degrees behind the east limb of the Sun in the active region NOAA 9898. Hard X-ray spectra and images were obtained by the X-ray imager on RHESSI during the impulsive phase of the flare. The Brazilian Solar Spectroscope and Ondrejov Radio Telescopes recorded type III bursts in 800-1400 MHz range in association with the flare. The images of the 3-6, 6-12, 12-25, and 25-50 keV X-ray sources, obtained simultaneously by RHESSI during the early impulsive phase of the flare, show that all the four X-ray sources were essentially at the same location well above the limb of the Sun. During the early impulsive phase, the X-ray spectrum over 8-30 keV range was consistent with a power law with a negative exponent of ˜ 6. The radio spectra show drifting radio structures with emission in a relatively narrow (Δf ≤ 200 MHz) frequency range indicating injection of energetic electrons into a plasmoid which is slowly drifting upwards in the corona.

Numerical experiments on the impact of spring north pacific SSTA on NPO and unusually cool summers in Northeast China

NASA Astrophysics Data System (ADS)

Lian, Yi; Zhao, Bin; Shen, Baizhu; Li, Shangfeng; Liu, Gang

2014-11-01

A set of numerical experiments designed to analyze the oceanic forcing in spring show that the combined forcing of cold (warm) El Niño (La Niña) phases in the Niño4 region and sea surface temperature anomalies (SSTA) in the westerly drifts region would result in abnormally enhanced NorthEast Cold Vortex (NECV) activities in early summer. In spring, the central equatorial Pacific El Niño phase and westerly drift SSTA forcing would lead to the retreat of non-adiabatic waves, inducing elliptic low-frequency anomalies of tropical air flows. This would enhance the anomalous cyclone-anticyclone-cyclone-anticyclone low-frequency wave train that propagates from the tropics to the extratropics and further to the mid-high latitudes, constituting a major physical mechanism that contributes to the early summer circulation anomalies in the subtropics and in the North Pacific mid-high latitudes. The central equatorial Pacific La Niña forcing in the spring would, on the one hand, induce teleconnection anomalies of high pressure from the Sea of Okhotsk to the Sea of Japan in early summer, and on the other hand indirectly trigger a positive low-frequency East Asia-Pacific teleconnection (EAP) wave train in the lower troposphere.