Tracer adsorption in sand-tank experiments of saltwater up-coning

NASA Astrophysics Data System (ADS)

Jakovovic, Danica; Post, Vincent E. A.; Werner, Adrian D.; Männicke, Oliver; Hutson, John L.; Simmons, Craig T.

2012-01-01

SummaryThis study aims to substantiate otherwise unresolved double-peaked plumes produced in recent saltwater up-coning experiments (see Jakovovic et al. (2011), Numerical modelling of saltwater up-coning: Comparison with experimental laboratory observations, Journal of Hydrology 402, 261-273) through additional laboratory testing and numerical modelling. Laboratory experimentation successfully reproduced the double-peaked plume demonstrating that this phenomenon was not an experimental nuance in previous experiments. Numerical modelling by Jakovovic et al. (2011) was extended by considering adsorption effects, which were needed to explain the observed up-coning double peaks of both previous and current laboratory experiments. A linear adsorption isotherm was applied in predicting dye tracer (Rhodamine WT) behaviour in the sand-tank experiments using adsorption parameters obtained experimentally. The same adsorption parameters were tested on all laboratory experiments and it was found that adsorption had insignificant effect on experiments with high pumping rates. However, low pumping rates produced pronounced spatial velocity variations within the dense salt plume beneath the pumping well, with velocities within the plume increasing from the centre of the plume towards the interface. The dye tracer was retarded relative to the salt and was transported preferentially along the higher-velocity paths (i.e. along the edges of the salt plume) towards the well forming double-peaked up-coning patterns. This illustrates the sensitive adsorptive nature of Rhodamine WT and that care should be taken when it is used in similar sand-tank experiments. Observations from this study offer insight into the separation of chemicals in natural systems due to different adsorption characteristics and under conditions of density-dependent flow.

The fluorescent tracer experiment on Holiday Beach near Mugu Canyon, Southern California

USGS Publications Warehouse

Kinsman, Nicole; Xu, J. P.

2012-01-01

After revisiting sand tracer techniques originally developed in the 1960s, a range of fluorescent coating formulations were tested in the laboratory. Explicit steps are presented for the preparation of the formulation evaluated to have superior attributes, a thermoplastic pigment/dye in a colloidal mixture with a vinyl chloride/vinyl acetate copolymer. In September 2010, 0.59 cubic meters of fluorescent tracer material was injected into the littoral zone about 4 kilometers upcoast of Mugu submarine canyon in California. The movement of tracer was monitored in three dimensions over the course of 4 days using manual and automated techniques. Detailed observations of the tracer's behavior in the coastal zone indicate that this tracer successfully mimicked the native beach sand and similar methods could be used to validate models of tracer movement in this type of environment. Recommendations including how to time successful tracer studies and how to scale the field of view of automated camera systems are presented along with the advantages and disadvantages of the described tracer methodology.

A Dye-Tracer Technique for Experimentally Obtaining Impingement Characteristics of Arbitrary Bodies and a Method for Determining Droplet Size Distribution

NASA Technical Reports Server (NTRS)

VonGlahn, Uwe H.; Gelder, Thomas F.; Smyers, William H., Jr.

1955-01-01

A dye-tracer technique has been developed whereby the quantity of dyed water collected on a blotter-wrapped body exposed to an air stream containing a dyed-water spray cloud can be colorimetrically determined in order to obtain local collection efficiencies, total collection efficiency, and rearward extent of impingement on the body. In addition, a method has been developed whereby the impingement characteristics obtained experimentally for a body can be related to theoretical impingement data for the same body in order to determine the droplet size distribution of the impinging cloud. Several cylinders, a ribbon, and an aspirating device to measure cloud liquid-water content were used in the studies presented herein for the purpose of evaluating the dye-tracer technique. Although the experimental techniques used in the dye-tracer technique require careful control, the methods presented herein should be applicable for any wind tunnel provided the humidity of the air stream can be maintained near saturation.

Measurement of discharge using tracers

USGS Publications Warehouse

Kilpatrick, Frederick A.; Cobb, Ernest D.

1984-01-01

The development of fluorescent dyes and fluorometers that can measure these dyes at very low concentrations has made dye-dilution methods practical for measuring discharge. These methods are particularly useful for determining discharge under certain flow conditions that are unfavorable for current meter measurements. These include small streams, canals, and pipes where:Turbulence is excessive for current meter measurement but conducive to good mixing.Moving rocks and debris are damaging to any instruments placed in the flow.Cross-sectional areas or velocities are indeterminant or changing.There are some unsteady flows such as exist with storm-runoff events on small streams.The flow is physically inaccessible or unsafe.From a practical standpoint, such measurements are limited primarily to small streams due to excessively long channel mixing lengths required of larger streams. Very good accuracy can be obtained provided:Adequate mixing length and time are allowed.Careful field and laboratory techniques are employed.Dye losses are not significant.This manual describes the slug-injection and constant-rate injection methods of performing tracer-dilution measurements. Emphasis is on the use of fluorescent dyes as tracers and the equipment, field methods, and Laboratory procedures for performing such measurements. The tracer-velocity method is also briefly discussed.

Comparison of thermal, salt and dye tracing to estimate shallow flow velocities: Novel triple-tracer approach

NASA Astrophysics Data System (ADS)

Abrantes, João R. C. B.; Moruzzi, Rodrigo B.; Silveira, Alexandre; de Lima, João L. M. P.

2018-02-01

The accurate measurement of shallow flow velocities is crucial to understand and model the dynamics of sediment and pollutant transport by overland flow. In this study, a novel triple-tracer approach was used to re-evaluate and compare the traditional and well established dye and salt tracer techniques with the more recent thermal tracer technique in estimating shallow flow velocities. For this purpose a triple tracer (i.e. dyed-salted-heated water) was used. Optical and infrared video cameras and an electrical conductivity sensor were used to detect the tracers in the flow. Leading edge and centroid velocities of the tracers were measured and the correction factors used to determine the actual mean flow velocities from tracer measured velocities were compared and investigated. Experiments were carried out for different flow discharges (32-1813 ml s-1) on smooth acrylic, sand, stones and synthetic grass bed surfaces with 0.8, 4.4 and 13.2% slopes. The results showed that thermal tracers can be used to estimate shallow flow velocities, since the three techniques yielded very similar results without significant differences between them. The main advantages of the thermal tracer were that the movement of the tracer along the measuring section was more easily visible than it was in the real image videos and that it was possible to measure space-averaged flow velocities instead of only one velocity value, with the salt tracer. The correction factors used to determine the actual mean velocity of overland flow varied directly with Reynolds and Froude numbers, flow velocity and slope and inversely with flow depth and bed roughness. In shallow flows, velocity estimation using tracers entails considerable uncertainty and caution must be taken with these measurements, especially in field studies where these variables vary appreciably in space and time.

Effect of antecedent soil moisture on preferential flow in a texture-contrast soil

NASA Astrophysics Data System (ADS)

Hardie, Marcus A.; Cotching, William E.; Doyle, Richard B.; Holz, Greg; Lisson, Shaun; Mattern, Kathrin

2011-02-01

SummaryThe effect of soil moisture status on preferential flow in a texture-contrast soil was investigated by applying 25 mm Brilliant Blue dye tracer to soil profiles at high and low antecedent soil moisture. Differences in soil morphology and chemistry between soil profiles had little effect on the depth of dye infiltration and dye distribution down the profile. Antecedent soil moisture strongly influenced the type, depth and rate of dye tracer movement. In the wet treatment, the dye tracer infiltrated to depths between 0.24 and 0.40 m, at an average rate of 120 mm h -1. Whilst in the dry treatment, the same volume of dye tracer infiltrated to between 0.85 and 1.19 m depth at an average rate of 1160 mm h -1. In dry antecedent conditions, finger flow developed in the A1 horizon as a result of water repellency. In the wet treatment, the wetting front developed permutations but did not break into fingers. Despite similar particle size distributions, flow in the A2 e was slower than the A1 horizon, due to the absence of macropores. In the dry treatment, the dye tracer ponded on the upper surface of the B21 horizon, which then spilled down the sides of the large clay columns as rivulets, at rates of between 2000 and 3000 mm h -1. The dye tracer accumulated at the base of the columns resulting in backfilling of the inter column shrinkage cracks, at an estimated rate of 750 mm h -1. In the subsoil, water movement occurred via shrinkage cracks which resulted in flow by-passing 99% of the soil matrix in the B21 horizon and 94% of the soil matrix in the B22 horizon. Evidence of rapid and deep infiltration in 'dry' texture-contrast soils has implications for water and solute management. This knowledge could be used to: (i) improve irrigation and fertilizer efficiency (ii) explain variations in crop yield (iii) reduce salinity through improved leaching practices, (iv) reduce the risk of agrochemicals contaminating shallow groundwater.

Demonstration and Validation of a Fractured Rock Passive Flux Meter

DTIC Science & Technology

2015-04-01

impregnated with a visible dye . The core inflates separately from the two end packers to provide a mechanism for holding the one or ES-2 more reactive...typically 1 meter). Deploying the FRPFM in a borehole and exposing it to flowing groundwater for duration t [T] gradually leaches visible dyes and...tracers from the internal and external sorbent layers and produces residual dye and tracer distributions. Visual inspection of the external layer

Environmental effects of dredging. Documentation of the dyecon module for ADDAMS: Determining the hydraulic retention and efficiency of confined disposal facilities. Technical note

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hayes, D.F.; Schroeder, P.R.; Engler, R.M.

This technical note describes procedures for determining mean hydraulic retention time and efficiency of a confined disposal facility (CDF) from a dye tracer slug test. These parameters are required to properly design a CDF for solids retention and for effluent quality considerations. Detailed information on conduct and analysis of dye tracer studies can be found in Engineer Manual 1110-2-5027, Confined Dredged Material Disposal. This technical note documents the DYECON computer program which facilitates the analysis of dye tracer concentration data and computes the hydraulic efficiency of a CDF as part of the Automated Dredging and Disposal Alternatives Management System (ADDAMS).

Summary and interpretation of dye-tracer tests to investigate the hydraulic connection of fractures at a ridge-and-valley-wall site near Fishtrap Lake, Pike County, Kentucky

USGS Publications Warehouse

Taylor, Charles J.

1994-01-01

Dye-tracer tests were done during 1985-92 to investigate the hydraulic connection between fractures in Pennsylvanian coal-bearing strata at a ridge-and-valley-wall site near Fishtrap Lake, Pike County, Ky. Fluorescent dye was injected into a core hole penetrating near-surface and mining-induced fractures near the crest of the ridge. The rate and direction of migration of dye in the subsurface were determined by measuring the relative concentration of dye in water samples collected from piezometers completed in conductive fracture zones and fractured coal beds at various stratigraphic horizons within the ridge. Dye-concentration data and water-level measurements for each piezometer were plotted as curves on dye-recovery hydrographs. The dye-recovery hydrographs were used to evaluate trends in the fluctuation of dye concentrations and hydraulic heads in order to identify geologic and hydrologic factors affecting the subsurface transport of dye. The principal factors affecting the transport of dye in the subsurface hydrologic system were determined to be (1) the distribution, interconnection, and hydraulic properties of fractures; (2) hydraulic-head conditions in the near-fracture zone at the time of dye injection; and (3) subsequent short- and long-term fluctuations in recharge to the hydrologic system. In most of the dye-tracer tests, dye-recovery hydrographs are characterized by complex, multipeaked dye-concentration curves that are indicative of a splitting of dye flow as ground water moved through fractures. Intermittent dye pulses (distinct upward spikes in dye concentration) mark the arrivals of dye-labeled water to piezometers by way of discrete fracture-controlled flow paths that vary in length, complexity, and hydraulic conductivity. Dye injections made during relatively high- or increasinghead conditions resulted in rapid transport of dye (within several days or weeks) from near-surf ace fractures to piezometers. Injections made during relatively low- or decreasing-head conditions resulted in dye being trapped in hydraulically dead zones in water-depleted fractures. Residual dye was remobilized from storage and transported (over periods ranging from several months to about 2 years) by increased recharge to the hydrologic system. Subsequent fluctuations in hydraulic gradients, resulting from increases or decreases in recharge to the hydrologic system, acted to speed or slow the transport of dye along the fracture-controlled flow paths. The dye-tracer tests also demonstrated that mining-related disturbances significantly altered the natural fracture-controlled flow paths of the hydrologic system over time. An abandoned underground mine and subsidence-related surface cracks extend to within 250 ft of the principal dye-injection core hole. Results from two of the dye-tracer tests at the site indicate that the annular seal in the core hole was breached by subsurface propagation of the mining-induced fractures. This propagation of fractures resulted in hydraulic short-circuiting between the dye-injection zone in the core hole and two lower piezometer zones, and a partial disruption of the hydraulic connection between the injection core hole and downgradient piezometers on the ridge crest and valley wall. In addition, injected dye was detected in piezometers monitoring a flooded part of the abandoned underground mine. Dye was apparently transported into the mine through a hydraulic connection between the injection core hole and subsidence-related fractures.

Measurement of discharge using tracers

USGS Publications Warehouse

Kilpatrick, F.A.; Cobb, Ernest D.

1985-01-01

The development of fluorescent dyes and fluorometers that can measure these dyes at very low concentrations has made dye-dilution methods practical for measuring discharge. These methods are particularly useful for determining discharge under certain flow conditions that are unfavorable for current meter measurements. These include small streams, canals, and pipes where 1. Turbulence is excessive for current-meter measurement but conducive to good mixing. 2. Moving rocks and debris may damage instruments placed in the flow. 3. Cross-sectional areas or velocities are indeterminate or changing. 4. The flow is unsteady, such as the flow that exists with storm-runoff events on small streams and urban storm-sewer systems. 5. The flow is physically inaccessible or unsafe. From a practical standpoint, such methods are limited primarily to small streams, because of the excessively long channel-mixing lengths required for larger streams. Very good accuracy can be obtained provided that 1. Adequate mixing length and time are allowed. 2. Careful field and laboratory techniques are used. 3. Dye losses are not significant. This manual describes the slug-injection and constant-rate injection methods of performing tracer-dilution measurements. Emphasis is on the use of fluorescent dyes as tracers and the equipment, field methods, and laboratory procedures for performing such measurements. The tracer-velocity method is also briefly discussed.

Dual-tracer method to estimate coral reef response to a plume of chemically modified seawater

NASA Astrophysics Data System (ADS)

Maclaren, J. K.; Caldeira, K.

2013-12-01

We present a new method, based on measurement of seawater samples, to estimate the response of a reef ecosystem to a plume of an additive (for example, a nutrient or other chemical). In the natural environment, where there may be natural variability in concentrations, it can be difficult to distinguish between changes in concentrations that would occur naturally and changes in concentrations that result from a chemical addition. Furthermore, in the unconfined natural environment, chemically modified water can mix with waters that have not been modified, making it difficult to distinguish between effects of dilution and effects of chemical fluxes or transformations. We present a dual-tracer method that extracts signals from observations that may be affected by both natural variability and dilution. In this dual-tracer method, a substance (in our example case, alkalinity) is added to the water in known proportion to a passive conservative tracer (in our example case, Rhodamine WT dye). The resulting plume of seawater is allowed to flow over the study site. Two transects are drawn across the plume at the front and back of the study site. If, in our example, alkalinity is plotted as a function of dye concentration for the front transect, the slope of the resulting mixing line is the ratio of alkalinity to dye in the added fluid. If a similar mixing line is measured and calculated for the back transect, the slope of this mixing line will indicate the amount of added alkalinity that remains in the water flowing out of the study site per unit of added dye. The ratio of the front and back slopes indicates the fraction of added alkalinity that was taken up by the reef. The method is demonstrated in an experiment performed on One Tree Reef (Queensland, Australia) aimed at showing that ocean acidification is already affecting coral reef growth. In an effort to chemically reverse some of the changes to seawater chemistry that have occurred over the past 200 years, we added sodium hydroxide to increase alkalinity in the plume and controlled for dilution with Rhodamine WT dye. Preliminary data will be presented and analyzed using the approach described above.

Tracer gauge: An automated dye dilution gauging system for ice‐affected streams

USGS Publications Warehouse

Clow, David W.; Fleming, Andrea C.

2008-01-01

In‐stream flow protection programs require accurate, real‐time streamflow data to aid in the protection of aquatic ecosystems during winter base flow periods. In cold regions, however, winter streamflow often can only be estimated because in‐channel ice causes variable backwater conditions and alters the stage‐discharge relation. In this study, an automated dye dilution gauging system, a tracer gauge, was developed for measuring discharge in ice‐affected streams. Rhodamine WT is injected into the stream at a constant rate, and downstream concentrations are measured with a submersible fluorometer. Data loggers control system operations, monitor key variables, and perform discharge calculations. Comparison of discharge from the tracer gauge and from a Cipoletti weir during periods of extensive ice cover indicated that the root‐mean‐square error of the tracer gauge was 0.029 m3 s−1, or 6.3% of average discharge for the study period. The tracer gauge system can provide much more accurate data than is currently available for streams that are strongly ice affected and, thus, could substantially improve management of in‐stream flow protection programs during winter in cold regions. Care must be taken, however, to test for the validity of key assumptions, including complete mixing and conservative behavior of dye, no changes in storage, and no gains or losses of water to or from the stream along the study reach. These assumptions may be tested by measuring flow‐weighted dye concentrations across the stream, performing dye mass balance analyses, and evaluating breakthrough curve behavior.

Data collection for a time-of-travel and dispersion study on the Coosa River near Childersburg, Alabama

USGS Publications Warehouse

Gardner, R.A.

1985-01-01

Approximately 2,300 dye-tracer samples were collected and analyzed during a 5-day time-of-travel study on a 23-mile reach of the Coosa River between Logan Martin and Lay dams near Childersburg, Alabama, October 27 to 31, 1984. Rhodamine WT was used as the tracer-dye. Unsteady flow conditions prevailed in the study reach. The rate of movement of the dye cloud between sampling cross sections ranged from 0.15 to 1.36 feet per second. The average rate of movement of the dye cloud between the injection cross section and the downstream sampling cross section was 0.42 foot per second. (USGS)

A tracer test to determine a hydraulic connection between the Lauchert and Danube karst catchments (Swabian Alb, Germany)

NASA Astrophysics Data System (ADS)

Knöll, Paul; Scheytt, Traugott

2018-03-01

A dye tracer experiment was conducted between the rivers Lauchert and Danube near Sigmaringen (Swabian Alb, southern Germany). After a flood event in the River Lauchert, it was suspected that flood water infiltrated into the karst system and drained towards springs in the Danube Valley. A potential connection of the two rivers is provided by the margin of a tectonic graben crossing the valleys. The aim of the tracer experiment was to gain insight into the dominant groundwater flow direction as well as to study a possible preferential connection between the Lauchert surface catchment area and springs in the Danube Valley. After introducing sodium-fluorescein into the unsaturated zone, six springs in the Danube Valley and the River Lauchert itself were observed. Tracer breakthrough at three springs showed that these springs are fed by groundwater originating in the Lauchert surface catchment. Adjacent springs were not affected by the experiment, indicating a rather sharp divide between separate spring catchments. Analyses of tracer breakthrough curves suggest that springs with a tracer occurrence are fed by the same conduit system. It was possible to show that spring catchments in Sigmaringen reach significantly into the Lauchert surface catchment. As a consequence, a drinking-water supplier has changed its supply strategy. The results also help to explain significant differences between flood damage in the central and lower courses of the River Lauchert.

Cryo-Assisted Resection En Bloc, and Cryoablation In Situ, of Primary Breast Cancer Coupled With Intraoperative Ultrasound-Guided Tracer Injection: A Preliminary Clinical Study.

PubMed

Korpan, Nikolai N; Xu, Kecheng; Schwarzinger, Philipp; Watanabe, Masashi; Breitenecker, Gerhard; Patrick, Le Pivert

2018-01-01

The aim of the study was to perform cryosurgery on a primary breast tumor, coupled with simultaneous peritumoral and intratumoral tracer injection of a blue dye, to evaluate lymphatic mapping. We explored the ability of our strategy to prevent tumor cells, but not that of injected tracers, to migrate to the lymphovascular drainage during conventional resection of frozen breast malignancies. Seventeen patients aged 51 (14) years (mean [standard deviation]), presenting primary breast cancer with stage I to IV, were randomly selected and treated in The Rudolfinerhaus Private Clinic in Vienna, Austria, and included in this preliminary clinical study. Under intraoperative ultrasound, 14 patients underwent curative cryo-assisted tumor resection en bloc, coupled with peritumoral tracer injection, which consisted of complete tumor freezing and concomitant peritumor injection with a blue dye, before resection and sentinel lymph node dissection (group A). Group B consists of 3 patients previously refused any standard therapy and had palliative tumor cryoablation in situ combined with intratumoral tracer injection. The intraoperative ultrasound facilitated needle positioning and dye injection timing. In group A, the frozen site extruded the dye that was distributed through the unfrozen tumor, the breast tissue, and the resection cavity for 12 patients. One to 4 lymph nodes were stained for 10 of 14 patients. The resection margin was evaluable. Our intraoperative ultrasound-guided performance revealed the injection and migration of a blue dye during the frozen resection en bloc and cryoablation in situ of primary breast tumors. Sentinel lymph node mapping, pathological determination of the tumor, and resection margins were achievable. The study paves the way for intraoperative cryo-assisted therapeutic strategies for breast cancer.

Tracer-monitored flow titrations.

PubMed

Sasaki, Milton K; Rocha, Diogo L; Rocha, Fábio R P; Zagatto, Elias A G

2016-01-01

The feasibility of implementing tracer-monitored titrations in a flow system is demonstrated. A dye tracer is used to estimate the instant sample and titrant volumetric fractions without the need for volume, mass or peak width measurements. The approach was applied to spectrophotometric flow titrations involving variations of sample and titrant flow-rates (i.e. triangle programmed technique) or concentration gradients established along the sample zone (i.e. flow injection system). Both strategies required simultaneous monitoring of two absorbing species, namely the titration indicator and the dye tracer. Mixing conditions were improved by placing a chamber with mechanical stirring in the analytical path aiming at to minimize diffusional effects. Unlike most of flow-based titrations, the innovation is considered as a true titration, as it does not require a calibration curve thus complying with IUPAC definition. As an application, acidity evaluation in vinegars involving titration with sodium hydroxide was selected. Phenolphthalein and brilliant blue FCF were used as indicator and dye tracer, respectively. Effects of sample volume, titrand/titrant concentrations and flow rates were investigated aiming at improved accuracy and precision. Results were reliable and in agreement with those obtained by a reference titration procedure. Copyright © 2015 Elsevier B.V. All rights reserved.

Water transfer via ectomycorrhizal fungal hyphae to conifer seedlings.

PubMed

Plamboeck, Agneta H; Dawson, Todd E; Egerton-Warburton, Louise M; North, Malcolm; Bruns, Thomas D; Querejeta, José Ignacio

2007-07-01

Little is known about water transfer via mycorrhizal hyphae to plants, despite its potential importance in seedling establishment and plant community development, especially in arid environments. Therefore, this process was investigated in the study reported in this paper in laboratory-based tripartite mesocosms containing the shrub Arctostaphylos viscida (manzanita) and young seedlings of sugar pine (Pinus lambertiana) and Douglas-fir (Pseudotsuga menziesii). The objectives were to determine whether water could be transported through mycorrhizal symbionts shared by establishing conifers and A. viscida and to compare the results obtained using two tracers: the stable isotope deuterium and the dye lucifer yellow carbohydrazide. Water containing the tracers was added to the central compartment containing single manzanita shrubs. The fungal hyphae were then collected as well as plant roots from coniferous seedlings in the other two compartments to determine whether water was transferred via fungal hyphae. In addition, the length of the hyphae and degree of mycorrhizal colonisation were determined. Internal transcribed spacer-restriction fragment length polymorphism (ITS-RFLP) analysis was used to identify the fungal species involved in dye (water) transfer. Results of the stable isotope analysis showed that water is transferred via mycorrhizal hyphae, but isotopically labelled water was only detected in Douglas-fir roots, not in sugar pine roots. In contrast, the fluorescent dye was transported via mycorrhizal hyphae to both Douglas-fir and sugar pine seedlings. Only 1 of 15 fungal morphotypes (identified as Atheliaceae) growing in the mesocosms transferred the dye. Differences were detected in the water transfer patterns indicated by the deuterium and fluorescent dye tracers, suggesting that the two labels are transported by different mechanisms in the same hyphae and/or that different fungal taxa transfer them via different routes to host plants. We conclude that both tracers can provide information on resource transfer between fungi and plants, but we cannot be sure that the dye transfer data provide accurate indications of water transfer rates and patterns. The isotopic tracer provides more direct indications of water movement and is therefore more suitable than the dye for studying water relations of plants and their associated mycorrhizal fungi.

An Ultralow-Dose 1-Day Protocol With Activities Lower Than 20 MBq for the Detection of Sentinel Lymph Nodes in Breast Cancer-Experiences After 150 Cases.

PubMed

Kolberg, Hans-Christian; Afsah, Shabnam; Kuehn, Thorsten; Winzer, Ute; Akpolat-Basci, Leyla; Stephanou, Miltiades; Wetzig, Sarah; Hoffmann, Oliver; Liedtke, Cornelia

2017-01-01

Common protocols for the detection of sentinel lymph nodes in early breast cancer often include the injection of the tracer 1 day before surgery. In order to detect enough activity on the day of surgery, the applied activity in many protocols is as high as several hundred MBq. So far, very few protocols with an activity below 20 MBq have been reported. We developed an ultralow-dose 1-day protocol with a mean activity lower than 20 MBq in order to reduce radiation exposure for patients and staff. Here, we are presenting our experiences in 150 consecutive cases. A total of 150 patients with clinically and sonographically negative axilla and no multicentricity underwent a sentinel lymph node biopsy using an ultralow-dose protocol performed on the day of surgery. No patient received systemic therapy prior to sentinel node biopsy. After peritumoral injection of the tracer Technetium-99m, a lymphoscintigraphy was performed in all cases. Seven minutes before the first cut, we injected 5 mL of blue dye in the region of the areola. In 148 (98.7%) of 150 patients, at least 1 sentinel lymph node could be identified by lymphoscintigraphy; the detection rate during surgery with combined tracers Technetium-99m and blue dye was 100%. The mean applied activity was 17.8 MBq (9-20). A mean number of 1.3 (0-5) sentinel lymph nodes were identified by lymphoscintigraphy and a mean number of 1.8 (1-5) sentinel lymph nodes were removed during sentinel lymph node biopsy. Ultralow-dose 1-day protocols with an activity lower than 20 MBq are a safe alternative to 1-day or 2-day protocols with significantly higher radiation doses in primary surgery for early breast cancer. Using Technetium-99m and blue dye in a dual tracer approach, detection rates of 100% are possible in clinical routine in order to reduce radiation exposure for patients and staff.

Heat tracer test in an alluvial aquifer: Field experiment and inverse modelling

NASA Astrophysics Data System (ADS)

Klepikova, Maria; Wildemeersch, Samuel; Hermans, Thomas; Jamin, Pierre; Orban, Philippe; Nguyen, Frédéric; Brouyère, Serge; Dassargues, Alain

2016-09-01

Using heat as an active tracer for aquifer characterization is a topic of increasing interest. In this study, we investigate the potential of using heat tracer tests for characterization of a shallow alluvial aquifer. A thermal tracer test was conducted in the alluvial aquifer of the Meuse River, Belgium. The tracing experiment consisted in simultaneously injecting heated water and a dye tracer in an injection well and monitoring the evolution of groundwater temperature and tracer concentration in the pumping well and in measurement intervals. To get insights in the 3D characteristics of the heat transport mechanisms, temperature data from a large number of observation wells closely spaced along three transects were used. Temperature breakthrough curves in observation wells are contrasted with what would be expected in an ideal layered aquifer. They reveal strongly unequal lateral and vertical components of the transport mechanisms. The observed complex behavior of the heat plume is explained by the groundwater flow gradient on the site and heterogeneities in the hydraulic conductivity field. Moreover, due to high injection temperatures during the field experiment a temperature-induced fluid density effect on heat transport occurred. By using a flow and heat transport numerical model with variable density coupled with a pilot point approach for inversion of the hydraulic conductivity field, the main preferential flow paths were delineated. The successful application of a field heat tracer test at this site suggests that heat tracer tests is a promising approach to image hydraulic conductivity field. This methodology could be applied in aquifer thermal energy storage (ATES) projects for assessing future efficiency that is strongly linked to the hydraulic conductivity variability in the considered aquifer.

Arterial input function of an optical tracer for dynamic contrast enhanced imaging can be determined from pulse oximetry oxygen saturation measurements.

PubMed

Elliott, Jonathan T; Wright, Eric A; Tichauer, Kenneth M; Diop, Mamadou; Morrison, Laura B; Pogue, Brian W; Lee, Ting-Yim; St Lawrence, Keith

2012-12-21

In many cases, kinetic modeling requires that the arterial input function (AIF)--the time-dependent arterial concentration of a tracer--be characterized. A straightforward method to measure the AIF of red and near-infrared optical dyes (e.g., indocyanine green) using a pulse oximeter is presented. The method is motivated by the ubiquity of pulse oximeters used in both preclinical and clinical applications, as well as the gap in currently available technologies to measure AIFs in small animals. The method is based on quantifying the interference that is observed in the derived arterial oxygen saturation (SaO₂) following a bolus injection of a light-absorbing dye. In other words, the change in SaO₂ can be converted into dye concentration knowing the chromophore-specific extinction coefficients, the true arterial oxygen saturation, and total hemoglobin concentration. A simple error analysis was performed to highlight potential limitations of the approach, and a validation of the method was conducted in rabbits by comparing the pulse oximetry method with the AIF acquired using a pulse dye densitometer. Considering that determining the AIF is required for performing quantitative tracer kinetics, this method provides a flexible tool for measuring the arterial dye concentration that could be used in a variety of applications.

Use of stable isotope-labeled Escherichia coli as a tracer in karst aquifers

USDA-ARS?s Scientific Manuscript database

Bacterial contamination of karst aquifers is a large concern across the globe, yet bacterial transport in karst aquifers is not currently well understood. Groundwater tracers typically used in karst systems include fluorescent dyes and latex microspheres. Not only can these tracers can be cost-prohi...

Influence of macroporosity on preferential solute and colloid transport in unsaturated field soils.

PubMed

Cey, Edwin E; Rudolph, David L; Passmore, Joanna

2009-06-26

Transport of solutes and colloids in soils, particularly those subject to preferential flow along macropores, is important for assessing the vulnerability of shallow groundwater to contamination. The objective of this study was to investigate flow and transport phenomena for dissolved and colloid tracers during large infiltration events in partially saturated, macroporous soils. Controlled tracer infiltration tests were completed at two field sites in southern Ontario. A tension infiltrometer (TI) was used to infiltrate water with dissolved Brilliant Blue FCF dye simultaneously with 3.7 microm and 0.53 microm diameter fluorescent microspheres. Infiltration was conducted under maximum infiltration pressure heads ranging from -5.2 to -0.4 cm. All infiltration test sites were excavated to examine and photograph dye-stained flow patterns, map soil features, and collect samples for microsphere enumeration. Results indicated that preferential transport of dye and microspheres via macropores occurred when maximum pressure heads were greater than -3.0 cm, and the corresponding infiltration rates exceeded 2.0 cm h(-1). Dye and microspheres were detected at depths greater than 70 cm under the highest infiltration rates from both sites. Microsphere concentrations in the top 5-10 cm of soil decreased by more than two orders of magnitude relative to input concentrations, yet remained relatively constant with depth thereafter. There was some evidence for increased retention of the 3.7 microm microspheres relative to the 0.53 microm microspheres, particularly at lower infiltration pressures where straining and attachment mechanisms are most prevalent. Microspheres were observed within dye stained soil matrix surrounding individual macropores, illustrating the significance of capillary pressures in controlling the vertical migration of both tracers in the vicinity of the macropores. Overall, microsphere distributions closely followed the dye patterns, with microsphere concentrations at all depths directly related to the intensity (or concentration) of dye staining. It is concluded that the flow system influenced transport to a much greater degree than differences between dissolved and colloidal species, and hence a dye tracer could serve as a reasonable surrogate for colloid distributions in the vadose zone following individual infiltration events.

Time-of-travel data for Nebraska streams, 1968 to 1977

USGS Publications Warehouse

Petri, L.R.

1984-01-01

This report documents the results of 10 time-of-travel studies, using ' dye-tracer ' methods, conducted on five streams in Nebraska during the period 1968 to 1977. Streams involved in the studies were the North Platte, North Loup, Elkhorn, and Big Blue Rivers and Salt Creek. Rhodamine WT dye in a 20 percent solution was used as the tracer for all 10 time-of-travel studies. Water samples were collected at several points below each injection site. Concentrations of dye in the samples were measured by determining fluorescence of the sample and comparing that value to fluorescence-concentration curves. Stream discharges were measured before and during each study. Results of each time-by-travel study are shown on two tables and on graph. The first table shows water discharge at injection and sampling sites, distance between sites, and time and rate of travel of the dye between sites. The second table provides descriptions of study sites, amounts of dye injected in the streams, actual sampling times, and actual concentrations of dye detected. The graphs for each time-of-travel study provide indications of changing travel rates between sampling sites, information on length of dye clouds, and times for dye passage past given points. (USGS)

Sentinel lymph nodes detection with an imaging system using Patent Blue V dye as fluorescent tracer

NASA Astrophysics Data System (ADS)

Tellier, F.; Steibel, J.; Chabrier, R.; Rodier, J. F.; Pourroy, G.; Poulet, P.

2013-03-01

Sentinel lymph node biopsy is the gold standard to detect metastatic invasion from primary breast cancer. This method can help patients avoid full axillary chain dissection, thereby decreasing the risk of morbidity. We propose an alternative to the traditional isotopic method, to detect and map the sentinel lymph nodes. Indeed, Patent Blue V is the most widely used dye in clinical routine for the visual detection of sentinel lymph nodes. A Recent study has shown the possibility of increasing the fluorescence quantum yield of Patent Blue V, when it is bound to human serum albumin. In this study we present a preclinical fluorescence imaging system to detect sentinel lymph nodes labeled with this fluorescent tracer. The setup is composed of a black and white CCD camera and two laser sources. One excitation source with a laser emitting at 635 nm and a second laser at 785 nm to illuminate the region of interest. The prototype is operated via a laptop. Preliminary experiments permitted to determine the device sensitivity in the μmol.L-1 range as regards the detection of PBV fluorescence signals. We also present a preclinical evaluation performed on Lewis rats, during which the fluorescence imaging setup detected the accumulation and fixation of the fluorescent dye on different nodes through the skin.

Multimodal flow visualization and optimization of pneumatic blood pump for sorbent hemodialysis system.

PubMed

Shu, Fangjun; Parks, Robert; Maholtz, John; Ash, Steven; Antaki, James F

2009-04-01

Renal Solutions Allient Sorbent Hemodialysis System utilizes a two-chambered pneumatic pump (Pulsar Blood Pump, Renal Solutions, Inc., Warrendale, PA, USA) to avoid limitations associated with peristaltic pumping systems. Single-needle access is enabled by counter-pulsing the two pump chambers, thereby obviating compliance chambers or blood reservoirs. Each chamber propels 20 cc per pulse of 3 s (dual access) or 6 s (single access) duration, corresponding to a peak Reynolds number of approximately 8000 (based on inlet velocity and chamber diameter). A multimodal series of flow visualization studies (tracer particle, dye washout, and dye erosion) was conducted on a sequence of pump designs with varying port locations and diaphragms to improve the geometry with respect to risk of thrombogenesis. Experiments were conducted in a simplified flow loop using occluders to simulate flow resistance induced by tubing and dialyzer. Tracer visualization revealed flow patterns and qualitatively indicated turbulence intensity. Dye washout identified dwell volume and areas of flow stagnation for each design. Dye erosion results indicated the effectiveness and homogeneity of surface washing. Compared to a centered inlet which resulted in a fluid jet that produced two counter-rotating vortices, a tangential inlet introduced a single vortex, and kept the flow laminar. It also provided better surface washing on the pump inner surface. However, a tangential outlet did not present as much benefit as expected. On the contrary, it created a sharp defection to the flow when transiting from filling to ejection.

Immunoassays for pesticide monitoring

NASA Astrophysics Data System (ADS)

Wengatz, Ingrid; Szurdoki, Ferenc; Swamy, Anand R.; Evans, Lawrence, III; Patonay, Gabor; Stimmann, Eric; Delwiche, Michael; Stoutamire, Donald; Gee, Shirley J.; Hammock, Bruce D.

1995-05-01

This study compares two formats of rapid assays for the detection of pesticides (bromacil and pyrethroid based metabolites): enzyme linked immunosorbent assay (ELISA) and immunoassay with near-infrared (NIR) fluorescence detection. NIR dye immunoassay (NIRDIA) measurements were carried out by using two different instruments, both having a silicon photodiode as the detector and a laser diode for excitation. ELISA and NIRDIA were performed in a tracer format, where the specific antibody is bound to the surface of a microtiter plate well and the tracer with enzyme or fluorescent dye label competes with the analyte for the antibody binding site. It was demonstrated that the NIRDIA is at least as sensitive as the ELISA. Both assays detect pesticides in the (mu) g/L (ppb) range. Hapten- macromolecule-NIR dye-conjugates have been synthesized with various biopolymers (e.g., proteins) as carriers. The use of carrier macromolecules enables convenient purification of the cyanine dye derivatives. The mild conjugation method of the dye is based on isothiocyanate chemistry.

Evaluation of 1, 3, 6, 8-Pyrene Tetra Sulfonic Acid tetra sodium salt (PTSA) as an agricultural spray tracer dye

USDA-ARS?s Scientific Manuscript database

The ability to measure spray deposition and movement with the use of tracer materials is a necessity for agricultural application research. Ideally, any tracer material used is highly soluble in the solution being sprayed, easily recoverable from both artificial and plant samples, stable in solutio...

Measurement of ground water velocity using Rhodamine WT dye near Sheffield, Illinois

USGS Publications Warehouse

Garklavs, George; Toler, L.G.

1985-01-01

Ground-water flow velocity was estimated in a tract of land adjacent to a low-level radioactive-waste disposal site near Sheffield, Illinois, by measuring the time-of-travel between two wells spaced 110 feet apart. Rhodamine WT dye was the principal tracer used in the test. The leading edge and peak concentrations of Rhodamine WT were well defined. A ground-water velocity of 6.9 feet per day (2,500 feet per year) was computed from the arrival time of the leading edge of the tracer cloud. (USGS)

CAPILLARY ELECTROPHORESIS/LASER-INDUCED FLUORESCENCE DETECTION OF FLUORESCEIN AS A GROUNDWATER MIGRATION TRACER

EPA Science Inventory

Capillary electrophoresis (CE) has been applied to the determination of the groundwater migration tracer dye fluorescein based on laser-induced fluorescence (LIF) detection and compared to determinations obtained with traditional spectrofluorimetry. Detection limits of injected d...

Traveltime and dispersion in the Illinois River, Marseilles to Peoria, Illinois

USGS Publications Warehouse

Zuehls, E.E.

1987-01-01

Traveltime in 89.3 mi of the Illinois River between Marseilles Dam and Peoria Dam was measured using rhodamine-WT dye. On each of four subreaches, dye-tracer measurements were made at approximately 50- and 85% flow duration in 1978, 1979, and 1985. The dye-tracer data were used to develop a method for estimating the traveltime and peak concentration of a solute spilled into the Illinois River. The estimates can apply to spills at any point within the study reach during a period of relatively steady discharge of from low to medium streamflow. A sample problem to demonstrate the estimating method is solved for a hypothetical situation in which 100,000 pounds of contaminant is spilled at a railroad crossing between Spring Valley and Hennepin, Illinois. (USGS)

Double-peaked breakthrough curves as a consequence of solute transport through underground lakes: a case study of the Furfooz karst system, Belgium

NASA Astrophysics Data System (ADS)

Dewaide, Lorraine; Collon, Pauline; Poulain, Amaël; Rochez, Gaëtan; Hallet, Vincent

2018-03-01

The existence of double-peaked breakthrough curves (BTC), which are the result of the transport of a dye tracer through underground lakes, is reported. Investigations were undertaken on the Furfooz karst system in southern Belgium. In this system, the River Lesse sinks partially into a swallow hole. The water follows a solitary conduit leading to an underground lake that is directly connected to a second underground lake. Double-peaked BTCs were detected in the resurgent water, downstream of this second lake. The report first describes field data (tracer tests in various hydrologic conditions) which point towards the double peak being linked to a nonlinear process that originates within the lakes. Complementary investigations within the lakes show a complex behavior of the dye tracer related to a specific hydrodynamic feature that leads to the separation of the solute plume. A conceptual model of the solute transport within the lakes is proposed. This model emphasizes the physical effect of the lakes on the dye flow-through process.

Application of Tracer-Injection Techniques to Demonstrate Surface-Water and Ground-Water Interactions Between an Alpine Stream and the North Star Mine, Upper Animas River Watershed, Southwestern Colorado

USGS Publications Warehouse

Wright, Winfield G.; Moore, Bryan

2003-01-01

Tracer-injection studies were done in Belcher Gulch in the upper Animas River watershed, southwestern Colorado, to determine whether the alpine stream infiltrates into underground mine workings of the North Star Mine and other nearby mines in the area. The tracer-injection studies were designed to determine if and where along Belcher Gulch the stream infiltrates into the mine. Four separate tracer-injec-tion tests were done using lithium bromide (LiBr), optical brightener dye, and sodium chloride (NaCl) as tracer solu-tions. Two of the tracers (LiBr and dye) were injected con-tinuously for 24 hours, one of the NaCl tracers was injected continuously for 12 hours, and one of the NaCl tracers was injected over a period of 1 hour. Concentration increases of tracer constituents were detected in water discharging from the North Star Mine, substantiating a surface-water and ground-water connection between Belcher Gulch and the North Star Mine. Different timing and magnitude of tracer breakthroughs indicated multiple flow paths with different residence times from the stream to the mine. The Pittsburgh and Sultan Mines were thought to physically connect to the North Star Mine, but tracer breakthroughs were inconclusive in water from these mines. From the tracer-injection tests and synoptic measure-ments of streamflow discharge, a conceptual model was devel-oped for surface-water and ground-water interactions between Belcher Gulch and the North Star Mine. This information, combined with previous surface geophysical surveys indicat-ing the presence of subsurface voids, may assist with decision-making process for preventing infiltration and for the remedia-tion of mine drainage from these mines.

Radio-tracer techniques for the study of flow in saturated porous materials

USGS Publications Warehouse

Skibitzke, H.E.; Chapman, H.T.; Robinson, G.M.; McCullough, Richard A.

1961-01-01

An experiment was conducted by the U.S. Geological Survey to determine the feasibility of using a radioactive substance as a tracer in the study of microscopic flow in a saturated porous solid. A radioactive tracer was chosen in preference to dye or other chemical in order to eliminate effects of the tracer itself on the flow system such as those relating to density, viscosity and surface tension. The porous solid was artificial "sandstone" composed of uniform fine grains of sand bonded together with an epoxy adhesive. The sides of the block thus made were sealed with an epoxy coating compound to insure water-tightness. Because of the chemical inertness of the block it was possible to use radioactive phosphorus (P32). Ion-exchange equilibrium was created between the block and nonradioactive phosphoric acid. Then a tracer tagged with P32 was injected into the block in the desired geometric configuration, in this case, a line source. After equilibrium in isotopic exchange was reached between the block and the line source, the block was rinsed, drained and sawn into slices. It was found that a quantitative analysis of the flow system may be made by assaying the dissected block. ?? 1961.

Rapid transport from the surface to wells in fractured rock: a unique infiltration tracer experiment.

PubMed

Levison, Jana K; Novakowski, Kent S

2012-04-01

A unique infiltration tracer experiment was performed whereby a fluorescent dye was applied to the land surface in an agricultural field, near Perth, Ontario, Canada, to simulate the transport of solutes to two pumped monitoring wells drilled into the granitic gneiss aquifer. This experiment, interpreted using the discrete-fracture capability of the numerical model HydroGeoSphere, showed that solute transport from the surface through thin soil (less than 2m) to wells in fractured bedrock can be extremely rapid (on the order of hours). Also, it was demonstrated that maximum concentrations of contaminants originating from the ground surface will not necessarily be the highest in the shallow aquifer horizon. These are important considerations for both private and government-owned drinking water systems that draw water from shallow fractured bedrock aquifers. This research illustrates the extreme importance of protecting drinking water at the source. Copyright © 2012 Elsevier B.V. All rights reserved.

Characterization of Rhodamine-123 as a Tracer Dye for Use In In vitro Drug Transport Assays

PubMed Central

Forster, Samantha; Thumser, Alfred E.; Hood, Steve R.; Plant, Nick

2012-01-01

Fluorescent tracer dyes represent an important class of sub-cellular probes and allow the examination of cellular processes in real-time with minimal impact upon these processes. Such tracer dyes are becoming increasingly used for the examination of membrane transport processes, as they are easy-to-use, cost effective probe substrates for a number of membrane protein transporters. Rhodamine 123, a member of the rhodamine family of flurone dyes, has been used to examine membrane transport by the ABCB1 gene product, MDR1. MDR1 is viewed as the archetypal drug transport protein, and is able to efflux a large number of clinically relevant drugs. In addition, ectopic activity of MDR1 has been associated with the development of multiple drug resistance phenotype, which results in a poor patient response to therapeutic intervention. It is thus important to be able to examine the potential for novel compounds to be MDR1 substrates. Given the increasing use rhodamine 123 as a tracer dye for MDR1, a full characterisation of its spectral properties in a range of in vitro assay-relevant media is warranted. Herein, we determine λmax for excitation and emission or rhodamine 123 and its metabolite rhodamine 110 in commonly used solvents and extraction buffers, demonstrating that fluorescence is highly dependent on the chemical environment: Optimal parameters are 1% (v/v) methanol in HBSS, with λex = 505 nm, λem = 525 nm. We characterise the uptake of rhodamine 123 into cells, via both passive and active processes, and demonstrate that this occurs primarily through OATP1A2-mediated facilitated transport at concentrations below 2 µM, and via micelle-mediated passive diffusion above this. Finally, we quantify the intracellular sequestration and metabolism of rhodamine 123, demonstrating that these are both cell line-dependent factors that may influence the interpretation of transport assays. PMID:22470447

A Water Mass Tracer Detected in Aerosols Demonstrates Ocean-Atmosphere Mass Transfer and Links Sea Spray Aerosol to Source Waters

NASA Astrophysics Data System (ADS)

Pendergraft, M.; Grimes, D. J.; Giddings, S. N.; Feddersen, F.; Prather, K. A.; Santander, M.; Lee, C.; Beall, C.

2016-12-01

During September and October of 2015 the Cross Surfzone/Inner-shelf Dye Exchange (CSIDE) project released rhodamine WT dye to study nearshore water movement and exchange offshore along a Southern California sandy beach. We utilized this opportunity to investigate ocean-atmosphere mass transfer via sea spray aerosol and linkage to source waters. Aerosol-concentrating sampling equipment was deployed at beachside and inland locations during three dye releases. Concentrated aerosol samples were analyzed for dye content using fluorescence spectroscopy. Here we present the ocean and atmosphere conditions associated with the presence and absence of dye in aerosol samples. Dye was identified in aerosol samples collected 0.1-0.3 km from the shoreline for 6 hs during the first and third dye releases of the CSIDE project. During these releases the dye persisted in the waters upwind of the sampling equipment. Dye was not detected in aerosol samples collected during the second release during which dye was moved away from waters upwind of the sampling equipment. Recovery of a chemical tracer in sea spray aerosol allows direct linkage to a known source area in the ocean that is independent of, but supported by, wind data. Our observations demonstrate: a tight ocean-atmosphere spatial coupling; a short residence time of coastal marine constituents before transfer to the atmosphere; that the ocean is both a sink for and a source of atmospheric and terrestrial material; and that human inputs to the ocean can return to us in sea spray aerosol.

Vertical diffusivity in the benthic boundary layer of the Oregon shelf from a deliberate tracer release experiment

NASA Astrophysics Data System (ADS)

Ferrón, S.; Ho, D. T.; Hales, B. R.

2010-12-01

A Fluorescein/SF6 deliberate tracer release experiment was conducted in benthic boundary layer (BBL) waters of the outer shelf of Oregon, as part of a multi-disciplinary research project that aims to study cross-shelf carbon transport and biogeochemical reaction rates within the BBL. The purpose of the tracers release was to examine physical transport processes, the rate of turbulent mixing and to provide a Lagrangian frame of reference for tracking other chemical species (pCO2, O2, CH4, DIC, DOC, POC, NO3-, NH4+, Fe). The tracers were injected on May 2009 during moderate upwelling favorable conditions with weak near-bottom currents, along a 4-km N-S line near the shelf streak at the 150 m isobath. Tracers distribution in the patch were tracked for over 5 days by tow-yo surveys using a winch-controlled pumping profiling vehicle that incorporated several in situ instruments such as CTD sensors, a 1200 kHz ADCP and a dye fluorometer for Fluorescein. Dissolved SF6 concentrations were analyzed on board from the underway water stream pumped from the towed vehicle by using an automated high-resolution chromatographic system equipped with an electron capture detector (ECD). The work presented here focuses on the estimation of the effective vertical diffusivity (Kz) in the BBL of the Oregon Shelf from the change in moment of the tracers’ vertical distribution, calculated using a 1D advection-diffusion model.

Use of molecular markers to compare Escherichia coli transport to traditional groundwater tracers in epikarst

USDA-ARS?s Scientific Manuscript database

Bacterial contamination of karst aquifers is a concern as water quality across the globe deteriorates in the face of decreasing water security. Traditional groundwater tracers (dye and microspheres) do not exhibit surface properties similar to bacteria and pathogens and therefore are not good proxie...

Criteria for selecting fluorescent dye tracers for soil hydrological applications using Uranine as an example

EPA Science Inventory

Calibrating and verifying 2-D and 3-D vadose zone flow and transport models requires detailed information on water and solute redistribution. Among the different water flow and mass transfer determination methods, staining tracers have the best spatial resolution allowing visuali...

Identification of runoff formation with two dyes in a mid-latitude mountain headwater

NASA Astrophysics Data System (ADS)

Vlcek, Lukas; Schneider, Philipp; Falatkova, Kristyna

2017-04-01

There have been numerous studies on subsurface flow in peat bog areas, as both water scarcity and floods have led to increased attention to this specific environment and its role within the hydrological cycle. In contrast, this experimental study identifies runoff formation at two opposite hillslopes in a peaty mountain headwater; a slope with organic soils (Peat / Histosol) and shallow groundwater ( 0.5 m below surface) complemented by a slope with mineral soils (Podzol) and no detectable groundwater within 2 m below surface. Differences in infiltration, percolation, and preferential flowpaths between both hillslopes could be identified by sprinkling experiments with two dyes - Brilliant Blue FCF and Fluorescein. By excavating dye-stained soil profiles parallel ("lateral") and perpendicular ("frontal") to the slopes' gradients - both within and downstream of the sprinkling plots - dye stained flow patterns in the soil could be clearly identified. The results show that biomat flow occurred at both hillslopes. The dye solutions infiltrated into the soil and continued either as lateral subsurface pipeflow (SSF), in the case of the Peat Bog, or percolated vertically towards the bedrock in the case of the Podzol. The study provides evidence that biomat flow (BMF) - shallow, lateral preferential flowpaths along decomposed tree roots or logs - is a major runoff formation process at the Peat Bog hillslope and in the adjacent riparian zone. This lateral flow through the organic soil hillslope (Peat Bog) towards the stream occurred mainly as shallow subsurface flow in organic layers above the groundwater level (BMF and SSF), but water partly percolates to the shallow groundwater via vertical macropores as well . In contrast, the mineral soil hillslope (Podzol) was mostly dominated by vertical percolation. Lateral flow occurred only on short distances in the organic topsoil as biomat flow (BMF). The sorptive tracer Brilliant Blue FCF successfully stained flowpaths in the soil at both hillslopes, whereas the identification of soil staining patterns by the relatively conservative tracer Fluorescein was limited on organic soil profiles.

Do diatoms percolate through soil and can they be used for tracing the origin of runoff?

NASA Astrophysics Data System (ADS)

De Graaf, Lenka; Cammeraat, Erik; Pfister, Laurent; Wetzel, Carlos; Klaus, Julian; Hissler, Christophe

2015-04-01

Tracers are widely used to study the movement of water in a catchment. Because of depletion of scientific possibilities with most common tracer types, we proposed the use of diatoms as a natural tracer. Paradoxical results on the contribution of surface runoff to the storm hydrograph were obtained in pioneer research on this idea. Diatom transport via the subsurface flow to the stream would explain this paradox. Prerequisite for this is vertical transport of diatoms through soils, which is the topic of this study. Emphasis is on percolation behavior (speed of percolation, speed of percolation over time, and species distribution) of Pseudostaurosira sp. and Melosira sp. (Bacillariophyceae) through undisturbed soil columns of contrasting substrates. Co-objective is to study the flowpaths of water through the soil columns. Natural undisturbed soil columns were sampled in the Attert basin (Luxembourg) on schist, marl and sandstone substrates. Rain simulation experiments were performed to study vertical diatom transport. Rhodamine dye experiments were carried out to gain insight in the active flowpaths of water, and breakthrough experiments were performed to study the responses of the soil columns to applied water. Diatoms were transported through the soil columns of the three substrates. A vast majority of diatom percolation took place within the first 15 minutes, percolation hereafter was marginal but nevertheless present. Peaks in diatom percolation corresponded with a high flux caused by the addition of the diatom culture, but seepage of diatoms along the sides is unlikely according to the species distribution and the rhodamine dye experiment. Pseudostaurosira sp. percolated significantly better than Melosira sp. Significantly more diatoms percolated through the marl columns compared to the schist columns and variance within the sandstone group was very high. Absolute differences between substrates however, were marginal. Most preferential flowpaths were observed in the marl columns, indicating highest active macroporosity in these columns. Although the sample size of this study was small, it is suspected that the highest diatom percolation percentages of the marl columns is linked to its greater macroporosity and most importantly, diatoms can percolate through soil (macro-) pores.

Use of natural and applied tracers to guide targeted remediation efforts in an acid mine drainage system, Colorado Rockies, USA

USGS Publications Warehouse

Cowie, Rory; Williams, Mark W.; Wireman, Mike; Runkel, Robert L.

2014-01-01

Stream water quality in areas of the western United States continues to be degraded by acid mine drainage (AMD), a legacy of hard-rock mining. The Rico-Argentine Mine in southwestern Colorado consists of complex multiple-level mine workings connected to a drainage tunnel discharging AMD to passive treatment ponds that discharge to the Dolores River. The mine workings are excavated into the hillslope on either side of a tributary stream with workings passing directly under the stream channel. There is a need to define hydrologic connections between surface water, groundwater, and mine workings to understand the source of both water and contaminants in the drainage tunnel discharge. Source identification will allow targeted remediation strategies to be developed. To identify hydrologic connections we employed a combination of natural and applied tracers including isotopes, ionic tracers, and fluorescent dyes. Stable water isotopes (δ18O/δD) show a well-mixed hydrological system, while tritium levels in mine waters indicate a fast flow-through system with mean residence times of years not decades or longer. Addition of multiple independent tracers indicated that water is traveling through mine workings with minimal obstructions. The results from a simultaneous salt and dye tracer application demonstrated that both tracer types can be successfully used in acidic mine water conditions.

Quantitative comparison of airborne remote-sensed and in situ Rhodamine WT dye and temperature during RIVET & IB09

NASA Astrophysics Data System (ADS)

Lenain, L.; Clark, D. B.; Guza, R. T.; Hally-Rosendahl, K.; Statom, N.; Feddersen, F.

2012-12-01

The transport and evolution of temperature, sediment, chlorophyll, fluorescent dye, and other tracers is of significant oceanographic interest, particularly in complex coastal environments such as the nearshore, river mouths, and tidal inlets. Remote sensing improves spatial coverage over in situ observations, and ground truthing remote sensed observations is critical for its use. Here, we present remotely sensed observations of Rhodamine WT dye and Sea Surface Temperature (SST) using the SIO Modular Aerial Sensing System (MASS) and compare them with in situ observations from the IB09 (0-300 m seaward of the surfzone, Imperial Beach, CA, October 2009) and RIVET (New River Inlet, NC, May 2012) field experiments. Dye concentrations are estimated from a unique multispectral camera system that measures the emission and absorption wavelengths of Rhodamine WT dye. During RIVET, dye is also characterized using a pushbroom hyperspectral imaging system (SPECIM AISAEagle VNIR 400-990 nm) while SST is estimated using a long-wave infrared camera (FLIR SC6000HS) coupled with an infrared pyrometer (Heitronics KT19.85II). Repeated flight passes over the dye plume were conducted approximately every 5 min for up to 4.5 hr in duration with a swath width ranging from 400 to 2000 m (altitude dependent), and provided a unique spatio-temporal depiction of the plume. A dye proxy is developed using the measured radiance at the emission and absorption wavelengths of the Rhodamine WT dye. During IB09 and RIVET, in situ dye and temperature were measured with two GPS-tracked jet skis, a small boat, and moored observations. The in situ observations are compared with the remotely sensed data in these two complex coastal environments. Funding was provided by the Office of Naval Research.

A DNA Tracer System for Hydrological Environment Investigations.

PubMed

Liao, Renkuan; Yang, Peiling; Wu, Wenyong; Luo, Dan; Yang, Dayong

2018-02-20

To monitor and manage hydrological pollution effectively, tracing sources of pollutants is of great importance and also is in urgent need. A variety of tracers have been developed such as isotopes, silica, bromide, and dyes; however, practical limitations of these traditional tracers still exist such as lack of multiplexed, multipoint tracing and interference of background noise. To overcome these limitations, a new tracing system based on DNA nanomaterials, namely DNA tracer, has already been developed. DNA tracers possess remarkable advantages including sufficient species, specificity, environmental friendly, stable migration, and high sensitivity as well as allowing for multipoints tracing. In this review article, we introduce the molecular design, synthesis, protection and signal readout strategies of DNA tracers, compare the advantages and disadvantages of DNA tracer with traditional tracers, and summarize the-state-of-art applications in hydrological environment investigations. In the end, we provide our perspective on the future development of DNA tracers.

Estimation of blood flow heterogeneity in human skeletal muscle using intravascular tracer data: importance for modeling transcapillary exchange.

PubMed

Vicini, P; Bonadonna, R C; Lehtovirta, M; Groop, L C; Cobelli, C

1998-01-01

Distributed models of blood-tissue exchange are widely used to measure kinetic events of various solutes from multiple tracer dilution experiments. Their use requires, however, a careful description of blood flow heterogeneity along the capillary bed. Since they have mostly been applied in animal studies, direct measurement of the heterogeneity distribution was possible, e.g., with the invasive microsphere method. Here we apply distributed modeling to a dual tracer experiment in humans, performed using an intravascular (indocyanine green dye, subject to distribution along the vascular tree and confined to the capillary bed) and an extracellular ([3H]-D-mannitol, tracing passive transcapillary transfer across the capillary membrane in the interstitial fluid) tracer. The goal is to measure relevant parameters of transcapillary exchange in human skeletal muscle. We show that assuming an accurate description of blood flow heterogeneity is crucial for modeling, and in particular that assuming for skeletal muscle the well-studied cardiac muscle blood flow heterogeneity is inappropriate. The same reason prevents the use of the common method of estimating the input function of the distributed model via deconvolution, which assumes a known blood flow heterogeneity, either defined from literature or measured, when possible. We present a novel approach for the estimation of blood flow heterogeneity in each individual from the intravascular tracer data. When this newly estimated blood flow heterogeneity is used, a more satisfactory model fit is obtained and it is possible to reliably measure parameters of capillary membrane permeability-surface product and interstitial fluid volume describing transcapillary transfer in vivo.

A line source tracer test - a better method for assessing high groundwater velocity

NASA Astrophysics Data System (ADS)

Magal, E.; Weisbrod, N.; Yakirevich, A.; Kurtzman, D.; Yechieli, Y.

2009-12-01

A line source injection is suggested as an effective method for assessing groundwater velocities and flow directions in subsurface characterized by high water fluxes. Modifying the common techniques of injecting a tracer into a well was necessary after frequently-used methods of natural and forced gradient tracer tests ended with no reliable information on the local groundwater flow. In a field experiment, tracers were injected into 8-m long line injection system constructed below the water table almost perpendicular to the assumed flow direction. The injection system was divided to four separate segments (each 2 m long) enabling the injection of four different tracers along the line source. An array of five boreholes located in an area of 10x10 m downstream was used for monitoring the tracers' transport. Two dye tracers (Uranine and Na Naphthionate) were injected in a long pulse of several hours into two of the injection pipe segments and two tracers (Rhenium oxide and Gd-DTPA) were instantaneously injected to the other two segments. The tracers were detected 0.7 to 2.3 hours after injection in four of the five observation wells, located 2.3 to 10 m from the injection system, respectively. Groundwater velocities were calculated directly from the tracers' arrival times and by fitting the observed breakthrough curves to simulations with one and two dimensions analytical solutions for conservative tracer transport. The groundwater velocity was determined to be ~100 m/d. The longitudinal dispersivity value, generated from fitting the tracer breakthrough curves, was in a range of 0.2-3m. The groundwater flow direction was derived based on the arrival of the tracers and was found to be consistent with the apparent direction of the hydraulic gradient. The hydraulic conductivity derived from the groundwater velocity was ~1200 m/d, which is in the upper range of gravel sediment.

Solute transport along preferential flow paths in unsaturated fractures

USGS Publications Warehouse

Su, Grace W.; Geller, Jil T.; Pruess, Karsten; Hunt, James R.

2001-01-01

Laboratory experiments were conducted to study solute transport along preferential flow paths in unsaturated, inclined fractures. Qualitative aspects of solute transport were identified in a miscible dye tracer experiment conducted in a transparent replica of a natural granite fracture. Additional experiments were conducted to measure the breakthrough curves of a conservative tracer introduced into an established preferential flow path in two different fracture replicas and a rock‐replica combination. The influence of gravity was investigated by varying fracture inclination. The relationship between the travel times of the solute and the relative influence of gravity was substantially affected by two modes of intermittent flow that occurred: the snapping rivulet and the pulsating blob modes. The measured travel times of the solute were evaluated with three transfer function models: the axial dispersion, the reactors‐in‐series, and the lognormal models. The three models described the solute travel times nearly equally well. A mechanistic model was also formulated to describe transport when the pulsating blob mode occurred which assumed blobs of water containing solute mixed with residual pools of water along the flow path.

New method for measuring water seepage through salmon spawning gravel.

Treesearch

Richard D. Orchard

1988-01-01

A new method, with heat as a tracer, was developed for measuring rate and direction of intragravel waterflow through salmon spawning gravel. A commercial flowmeter was calibrated in the laboratory under controlled environmental conditions. Flow measurements comparing the flowmeter with a dye-tracer method were made in an artificial stream channel at Young Bay and in...

pH dependence and unsuitability of fluorescein dye as a tracer for pesticide mobility studies in acid soil

Treesearch

Chris Peterson

2009-01-01

The mobility of fluorescein and bromide used as tracers in packed soil columns was investigated.Five different soils were used in two application methods: soil surface application and soil incorporation, both of which simulate accepted methods of soil application of termiticides to prevent structural infestation. The...

Arterial input function of an optical tracer for dynamic contrast enhanced imaging can be determined from pulse oximetry oxygen saturation measurements

NASA Astrophysics Data System (ADS)

Elliott, Jonathan T.; Wright, Eric A.; Tichauer, Kenneth M.; Diop, Mamadou; Morrison, Laura B.; Pogue, Brian W.; Lee, Ting-Yim; St. Lawrence, Keith

2012-12-01

In many cases, kinetic modeling requires that the arterial input function (AIF)—the time-dependent arterial concentration of a tracer—be characterized. A straightforward method to measure the AIF of red and near-infrared optical dyes (e.g., indocyanine green) using a pulse oximeter is presented. The method is motivated by the ubiquity of pulse oximeters used in both preclinical and clinical applications, as well as the gap in currently available technologies to measure AIFs in small animals. The method is based on quantifying the interference that is observed in the derived arterial oxygen saturation (SaO2) following a bolus injection of a light-absorbing dye. In other words, the change in SaO2 can be converted into dye concentration knowing the chromophore-specific extinction coefficients, the true arterial oxygen saturation, and total hemoglobin concentration. A simple error analysis was performed to highlight potential limitations of the approach, and a validation of the method was conducted in rabbits by comparing the pulse oximetry method with the AIF acquired using a pulse dye densitometer. Considering that determining the AIF is required for performing quantitative tracer kinetics, this method provides a flexible tool for measuring the arterial dye concentration that could be used in a variety of applications.

Novel aminobenzanthrone dyes for amyloid fibril detection

NASA Astrophysics Data System (ADS)

Vus, Kateryna; Trusova, Valeriya; Gorbenko, Galyna; Kirilova, Elena; Kirilov, Georgiy; Kalnina, Inta; Kinnunen, Paavo

2012-04-01

A series of novel fluorescent aminobenzanthrone dyes have been tested for their ability to identify and characterize the oligomeric and fibrillar aggregates of lysozyme. The parameters of the dye binding to native, oligomeric and fibrillar protein have been calculated from the results of fluorimetric titration. Furthermore, several additional quantities reflecting the preference of the probe to either pre-fibrillar or fibrillar protein aggregates, have been evaluated. Based on the comparative analysis of the recovered parameters, AM4 was recommended for selective detection of protein pre-fibrillar assemblies, while the dyes AM1, AM2, AM3 were selected as the most prospective amyloid tracers.

Airborne lidar experiments at the Savannah River Plant

NASA Technical Reports Server (NTRS)

Krabill, William B.; Swift, Robert N.

1985-01-01

The results of remote sensing experiments at the Department of Energy (DOE) Savannah River Nuclear Facility utilizing the NASA Airborne Oceanographic Lidar (AOL) are presented. The flights were conducted in support of the numerous environmental monitoring requirements associated with the operation of the facility and for the purpose of furthering research and development of airborne lidar technology. Areas of application include airborne laser topographic mapping, hydrologic studies using fluorescent tracer dye, timber volume estimation, baseline characterization of wetlands, and aquatic chlorophyll and photopigment measurements. Conclusions relative to the usability of airborne lidar technology for the DOE for each of these remote sensing applications are discussed.

Evaluation of acridine orange, LysoTracker Red, and quinacrine as fluorescent probes for long-term tracking of acidic vesicles.

PubMed

Pierzyńska-Mach, Agnieszka; Janowski, Paweł A; Dobrucki, Jurek W

2014-08-01

Acidic vesicles can be imaged and tracked in live cells after staining with several low molecular weight fluorescent probes, or with fluorescently labeled proteins. Three fluorescent dyes, acridine orange, LysoTracker Red DND-99, and quinacrine, were evaluated as acidic vesicle tracers for confocal fluorescence imaging and quantitative analysis. The stability of fluorescent signals, achievable image contrast, and phototoxicity were taken into consideration. The three tested tracers exhibit different advantages and pose different problems in imaging experiments. Acridine orange makes it possible to distinguish acidic vesicles with different internal pH but is fairly phototoxic and can cause spectacular bursts of the dye-loaded vesicles. LysoTracker Red is less phototoxic but its rapid photobleaching limits the range of useful applications considerably. We demonstrate that quinacrine is most suitable for long-term imaging when a high number of frames is required. This capacity made it possible to trace acidic vesicles for several hours, during a process of drug-induced apoptosis. An ability to record the behavior of acidic vesicles over such long periods opens a possibility to study processes like autophagy or long-term effects of drugs on endocytosis and exocytosis. © 2014 International Society for Advancement of Cytometry.

A strategy to measure electrophysiological changes with photoacoustic imaging (Conference Presentation)

NASA Astrophysics Data System (ADS)

Sepela, Rebecka J.; Sherlock, Benjamin E.; Tian, Lin; Marcu, Laura; Sack, Jon

2017-03-01

Photoacoustic imaging is an emerging technology capable of both functional and structural biological imaging. Absorption and scattering in tissue limit the penetration depth of conventional microscopy techniques to <1mm. Photoacoustic imaging however, can offer high-resolution and contrast at depths of several centimeters. Though functional imaging of endogenous contrast agents, such as hemoglobin, is widely implemented, currently photoacoustic imaging is unable to functionally report electrophysiological changes within cells. We aim to develop photoacoustic contrast agents to fulfill this need. Cells throughout the brain and body create electrical signals using ion channel proteins. These proteins undergo structural changes to regulate the flux of salt ions into the cell. We have recently developed ion channel activity tracers that dissociate from ion channels after the protein changes structure. By conjugating the tracer to dyes that are sensitive to changes in their chemical environment, we can detect tracer dissociation and therefore ion channel activity. We are exploring whether a similar mechanism can create photoacoustic signal intensity changes. To test if the environmental sensitivity of the dye is photoacoustically distinguishable, we imaged the dye in different solvent backgrounds. We report that manipulation of the chemical environment of the contrast dye results in robust changes in photoacoustic properties. We are working to capture photoacoustic signal changes that occur when ion channel proteins activate using live cell imaging. This technology could permit photoacoustic imaging of electrophysiological dynamics in deep tissue, such as the brain. Further optimization of this technology could lead to concurrent imaging of neural activity and hemodynamic responses, a crucial step towards understanding neurovascular coupling in the brain.

Use of Nitrogen-15-Enriched Escherichia coli as a Bacterial Tracer in Karst Aquifers.

PubMed

Ward, James W; Warden, John G; Bandy, Ashley M; Fryar, Alan E; Brion, Gail M; Macko, Stephen A; Romanek, Christopher S; Coyne, Mark S

2016-11-01

Karst aquifers are susceptible to contamination by microorganisms, but relatively few studies have used bacteria as tracers. We demonstrate the utility of Escherichia coli enriched in the stable isotope nitrogen-15 ( 15 N) as a novel bacterial tracer. Nonpathogenic E. coli from two springs in central Kentucky were grown on 15 N-enriched media. Survival of E. coli and persistence of the isotopic signal were assessed in two sets of laboratory experiments conducted with sterilized spring water in dark microcosms at 14 °C. First, isotopically labeled bacteria survived for 130 d at concentrations within one log unit of the average initial value, and there was no significant difference in δ 15 N values from Day 1 to Day 130. Second, water samples with E. coli were inoculated with either of two different species of protozoa (Tetrahymena pyriformis or Colpoda steinii). During 7 d, δ 15 N values increased in T. pyriformis while bacterial populations decreased. In a field test, following a 2.1-cm rainfall, 15 N-labeled E. coli, solutes (rhodamine WT dye and bromide), and latex microspheres were injected into a sinkhole approximately 530 m upgradient of a spring. Breakthrough of all tracers coincided, but microspheres were remobilized by subsequent storms, unlike other tracers. Enriched E. coli exhibited more tailing than solute tracers during the initial storm-flow recession. These results indicate that 15 N-enriched E. coli is a viable tracer of bacterial transport in karst aquifers, although predation may attenuate the isotopic signal in systems that are not rapidly flushed. © 2016, National Ground Water Association.

Tracer simulation study of potential solute movement in Port Royal Sound, South Carolina

USGS Publications Warehouse

Kilpatrick, F.A.; Cummings, T. Ray

1972-01-01

A tracer study was conducted in Port Royal Sound to simulate the movement and ultimate pattern of concentration of a solute continuously injected into the flow. A total of 750 pounds of Rhodamine WT dye was injected by boat during a period of 24.8 hours in a line across the Colleton River. During the following 43 days, samples of water were taken at selected points in the sound, and the concentration of dye in the samples was determined by fluorometric analysis. The data obtained in the field study were used with theoretical models to compute the ultimate pattern of concentration of nonconservative and conservative solutes for a hypothetical continuous injection at the site on the Colleton River.

Measured flow and tracer-dye data showing the anthropogenic effects on the hydrodynamics of south Sacramento-San Joaquin Delta, California, spring 1996 and 1997

USGS Publications Warehouse

Oltmann, Richard N.

1998-01-01

Tidal flows were measured using acoustic Doppler current profilers and ultrasonic velocity meters during spring 1996 and 1997 in south Sacramento-San Joaquin Delta, California, when (1) a temporary barrier was installed at the head of Old River to prevent the entrance of migrating San Joaquin River salmon smolts, (2) the rate of water export from the south Delta was reduced for an extended period of time, and (3) a 30-day pulse flow was created on the San Joaquin River to move salmon smolts north away from the export facilities during spring 1997. Tracer-dye measurements also were made under these three conditions.

Does drought alter hydrological functions in forest soils? An infiltration experiment

NASA Astrophysics Data System (ADS)

Gimbel, K. F.; Puhlmann, H.; Weiler, M.

2015-08-01

The water cycle is expected to change in future and severely affect precipitation patterns across central Europe and in other parts of the world, leading to more frequent and severe droughts. Usually, it is assumed that system properties, like soil properties, remain stable and will not be affected by drought events. To study if this assumption is appropriate, we address the effects of drought on the infiltration behavior of forest soils using dye tracer experiments on six sites in three regions across Germany, which were forced into drought conditions. The sites cover clayey, loamy and sandy textured soils. In each region, we compared a deciduous and a coniferous forest stand to address differences between the main tree species. The results of the dye tracer experiments show clear evidence for changes in infiltration behavior at the sites. The infiltration changed at the clayey plots from regular and homogeneous flow to fast preferential flow. Similar behavior was observed at the loamy plots, where large areas in the upper layers remained dry, displaying signs of strong water repellency. This was confirmed by WDPT tests, which revealed, in all except one plot, moderate to severe water repellency. Water repellency was also accountable for the change of regular infiltration to fingered flow in the sandy soils. The results of this study suggest that the "drought-history" or generally the climatic conditions in the past of a soil are more important than the actual antecedent soil moisture status regarding hydrophobicity and infiltration behavior; and also, that drought effects on infiltration need to be considered in hydrological models to obtain realistic predictions concerning water quality and quantity in runoff and groundwater recharge.

Feasibility of using sodium chloride as a tracer for the characterization of the distribution of matter in complex multi-compartment 3D bioreactors for stem cell culture.

PubMed

Gerlach, Jörg C; Witaschek, Tom; Strobel, Catrin; Brayfield, Candace A; Bornemann, Reinhard; Catapano, Gerardo; Zeilinger, Katrin

2010-06-01

The experimental characterization of the distribution of matter in complex multi-compartment three-dimensional membrane bioreactors for human cell culture is complicated by tracer interactions with the membranes and other bioreactor constituents. This is due to the fact that membranes with a high specific surface area often feature a hydrophobic chemical backbone that may adsorb tracers often used to this purpose, such as proteins and dyes. Membrane selectivity, and its worsening caused by protein adsorption, may also hinder tracer transfer across neighboring compartments, thus preventing effective characterization of the distribution of matter in the whole bioreactor. Tracer experiments with sodium chloride (NaCl) may overcome some of these limitations and be effectively used to characterize the distribution of matter in complex 3D multi-compartments membrane bioreactors for stem cell culture. NaCl freely permeates most used membranes, it does not adsorb on uncharged membranes, and its concentration may be accurately measured in terms of solution conductivity. In this preliminary study, the feasibility of complex multi-compartment membrane bioreactors was investigated with a NaCl concentration pulse challenge to characterize how their distribution of matter changes when they are operated under different conditions. In particular, bioreactors consisting of three different membrane types stacked on top of one another to form a 3D network were characterized under different feed conditions.

A field experiment with variable-suction multi-compartment samplers to measure the spatio-temporal distribution of solute leaching in an agricultural soil.

PubMed

Bloem, E; Hogervorst, F A N; de Rooij, G H

2009-04-01

Solutes spread out in time and space as they move downwards from the soil surface with infiltrating water. Solute monitoring in the field is often limited to observations of resident concentrations, while flux concentrations govern the movement of solutes in soils. A recently developed multi-compartment sampler is capable of measuring fluxes at a high spatial resolution with minimal disturbance of the local pressure head field. The objective of this paper is to use this sampler to quantify the spatial and temporal variation of solute leaching below the root zone in an agricultural field under natural rainfall in winter and spring. We placed two samplers at 31 and 25 cm depth in an agricultural field, leaving the soil above undisturbed. Each sampler contained 100 separate cells of 31x31 mm. Water fluxes were measured every 5 min for each cell. We monitored leaching of a chloride pulse under natural rainfall by frequently extracting the collected leachate while leaving the samplers buried in situ. This experiment was followed by a dye tracer experiment. This setting yielded information that widely surpassed the information that can be provided by separate anionic and dye tracer trials, and solute transport monitoring by coring or suction cups. The detailed information provided by the samplers showed that percolation at the sampling depth started much faster (approximately 3 h after the start of rainfall) in initially wet soil (pressure head above -65 cm) than in drier soil (more than 14 h at pressure heads below -80 cm). At any time, 25% of the drainage passed through 5-6% of the sampled area, reflecting the effect of heterogeneity on the flow paths. The amount of solute carried by individual cells varied over four orders of magnitude. The lateral concentration differences were limited though. This suggests a convective-dispersive regime despite the short vertical travel distance. On the other hand, the dilution index indicates a slight tendency towards stochastic-convective transport at this depth. There was no evidence in the observed drainage patterns and dye stained profiles of significant disturbance of the flow field by the samplers.

Simulation of soluble waste transport and buildup in surface waters using tracers

USGS Publications Warehouse

Kilpatrick, F.A.

1993-01-01

Soluble tracers can be used to simulate the transport and dispersion of soluble wastes that might have been introduced or are planned for introduction into surface waters. Measured tracer-response curves produced from the injection of a known quantity of soluble tracer can be used in conjunction with the superposition principle to simulate potential waste buildup in streams, lakes, and estuaries. Such information is particularly valuable to environmental and water-resource planners in determining the effects of proposed waste discharges. The theory, techniques, analysis, and presentation of results of tracer-waste simulation tests in rivers, lakes, and estuaries are described. This manual builds on other manuals dealing with dye tracing by emphasizing the expanded use of data from time-of-travel studies.

Simulation of soluble waste transport and buildup in surface waters using tracers

USGS Publications Warehouse

Kilpatrick, Frederick A.

1992-01-01

Soluble tracers can be used to simulate the transport and dispersion of soluble wastes that might have been introduced or are planned for introduction into surface waters. Measured tracer-response curves produced from the injection of a known quantity of soluble tracer can be used in conjunction with the superposition principle to simulate potential waste buildup in streams, lakes, and estuaries. Such information is particularly valuable to environmental and water-resource planners in determining the effects of proposed waste discharges.The theory, techniques, analysis, and presentation of results of tracer-waste simulation tests in rivers, lakes, and estuaries are described. This manual builds on other manuals on dye tracing with emphasis on the expanded use of time-of-travel type data.

Determination of stream reaeration coefficients by use of tracers

USGS Publications Warehouse

Kilpatrick, F.A.; Rathbun, R.E.; Yotsukura, N.; Parker, G.W.; DeLong, L.L.

1987-01-01

Stream reaeration is the physical absorption of oxygen from the atmosphere by a flowing stream. This is the primary process by which a stream replenishes the oxygen consumed in the biodegradation of organic wastes.Prior to 1965, reaeration rate coefficients could be estimated only by indirect methods. In 1965, a direct method of measuring stream reaeration coefficients was developed in which a radioactive tracer gas was injected into a stream--the tracer gas being desorbed from the stream inversely to how oxygen would be absorbed. The technique has since been modified by substituting hydrocarbon gases for the radioactive tracer gas.This manual describes the slug-injection and constant-rate injection methods of performing gas-tracer desorption measurements. Emphasis is on the use of rhodamine WT dye as a relatively conservative tracer and propane as the nonconservative gas tracer, on planning field tests, methods of injection, sampling and analysis, and computational techniques to compute desorption and reaeration coefficients.

Novel 1:1 labeling and purification process for C-terminal thioester and single cysteine recombinant proteins using generic peptidic toolbox reagents.

PubMed

Portal, Christophe F; Seifert, Jan-Marcus; Buehler, Christof; Meisner-Kober, Nicole-Claudia; Auer, Manfred

2014-07-16

We developed a versatile set of chemical labeling reagents which allow dye ligation to the C-terminus of a protein or a single internal cysteine and target purification in a simple two-step process. This simple process results in a fully 1:1 labeled conjugate suitable for all quantitative fluorescence spectroscopy and imaging experiments. We refer to a "generic labeling toolbox" because of the flexibility to choose one of many available dyes, spacers of different lengths and compositions which increase the target solubility, a variety of affinity purification tags, and different cleavage chemistries to release the 1:1 labeled proteins. Studying protein function in vitro or in the context of live cells and organisms is of vital importance in biological research. Although label free detection technologies gain increasing interest in molecular recognition science, fluorescence spectroscopy is still the most often used detection technique for assays and screens both in academic as well as in industrial groups. For generations, fluorescence spectroscopists have labeled their proteins of interest with small fluorescent dyes by random chemical linking on the proteins' exposed lysines and cysteines. Chemical reactions with a certain excess of activated esters or maleimides of longer wavelength dyes hardly ever result in quantitative labeling of the target protein. Most of the time, more than one exposed amino acid side chain reacts. This results in a mixture of dye-protein complexes of different labeling stoichiometries and labeling sites. Only mass spectrometry allows resolving the precise chemical composition of the conjugates. In "classical" ensemble averaging fluorescent experiments, these labeled proteins are still useful, and quantification of, e.g., ligand binding experiments, is achieved via knowledge of the overall protein concentration and a fluorescent signal change which is proportional to the amount of complex formed. With the development of fluorescence fluctuation analysis techniques working at single molecule resolution, like fluorescence correlation spectroscopy (FCS), fluorescence cross correlation spectroscopy (FCCS), fluorescence intensity diffusion analysis (FIDA), etc., it became important to work with homogeneously labeled target proteins. Each molecule participating in a binding equilibrium should be detectable when it freely fluctuates through the confocal focus of a microscope. The measured photon burst for each transition contains information about the size and the stoichiometry of a protein complex. Therefore, it is important to work with reagents that contain an exact number of tracers per protein at identical positions. The ideal fluorescent tracer-protein complex stoichiometry is 1:1. While genetic tags such as fluorescent proteins (FPs) are widely used to detect proteins, FPs have several limitations compared to chemical tags. For example, FPs cannot easily compete with organic dyes in the flexibility of modification and spectral range; moreover, FPs have disadvantages in brightness and photostability and are therefore not ideal for most biochemical single molecule studies. We present the synthesis of a series of exemplaric toolbox reagents and labeling results on three target proteins which were needed for high throughput screening experiments using fluorescence fluctuation analysis at single molecule resolution. On one target, Hu-antigen R (HuR), we demonstrated the activity of the 1:1 labeled protein in ribonucleic acid (RNA) binding, and the ease of resolving the stoichiometry of an RNA-HuR complex using the same dye on protein and RNA by Fluorescence Intensity Multiple Distribution Analysis (FIMDA) detection.

Assessing vulnerability mapping and protection zones of karst spring waters and validating by the joint use of natural and artificial tracers. The case of Auta Spring (Southern Spain)

NASA Astrophysics Data System (ADS)

Marín, Ana Isabel; Mudarra, Matías; Andreo, Bartolomé

2016-04-01

Delineation of protection zones for water supply and implementation of proper land-use practices in surrounding areas are crucial aspects for a sustainable use of valuable drinking water resources. This is even more important in karst aquifers, which are particularly sensitive to contamination, having a very low self-cleaning capacity due to their structure and hydrological behavior. Consequently, specific methodologies adapted to the particular characteristics of karst media are necessary. In this work, an approach for protection zoning of the pilot site of Auta karst spring (southern Spain) is proposed, based on the application of COP+K method for contamination vulnerability and validation of results by natural (organic) tracers of infiltration (NO3-, TOC, intrinsic fluorescence) and by a dye tracer test conducted on June, 2011 (injecting 500 mg uranine). The aquifer drained by Auta spring (8.5 km2) presents a complex geological structure, formed by Jurassic dolostones and limestones highly folded and fractured. Recharge takes place by the infiltration of rainfall through karst landforms and also by losses in an adjacent river when it flows over the carbonate outcrops (dye injection point). Drainage is mainly through several springs located at the southwest, including Auta spring and 5 overflow springs. The source vulnerability map obtained by applying COP+K method can be adopted as the baseline to delineate the protection zones, through the conversion from vulnerability classes to degrees of protection. Dye tracer test and natural tracers of infiltration corroborate that aquifer sectors influenced by the river can be extremely vulnerable to pollution, but also well-developed exokarst features. In fact, slight evidences of pollution have been detected during the study period, with relatively-high NO3- contents and high fluorescence linked to bacteriological activity in Auta spring water. The jointly use of natural and artificial tracers constitute a reliable and effective procedure for validating vulnerability mapping of karst systems and springs used for water supply. This procedure is meant to implement and to complement protection zone mapping, particularly in countries lacking guidelines for protecting the water resources of karst aquifers.

Oligomeric structure and functional characterization of Caenorhabditis elegans Innexin-6 gap junction protein.

PubMed

Oshima, Atsunori; Matsuzawa, Tomohiro; Nishikawa, Kouki; Fujiyoshi, Yoshinori

2013-04-12

Innexin is the molecular component of invertebrate gap junctions. Here we successfully expressed and purified Caenorhabditis elegans innexin-6 (INX-6) gap junction channels and characterized the molecular dimensions and channel permeability using electron microscopy (EM) and microinjection of fluorescent dye tracers, respectively. Negative staining and thin-section EM of isolated INX-6 gap junction membranes revealed a loosely packed hexagonal lattice and a greater cross-sectional width than that of connexin26 and connexin43 (Cx43)-GFP. In gel filtration analysis, the elution profile of purified INX-6 channels in dodecyl maltoside solution exhibited a peak at ∼400 kDa that was shifted to ∼800 kDa in octyl glucose neopentyl glycol. We also obtained the class averages of purified INX-6 channels from these peak fractions by single particle analysis. The class average from the ∼800-kDa fraction showed features of the junction form with a longitudinal height of 220 Å, a channel diameter of 110 Å in the absence of detergent micelles, and an extracellular gap space of 60 Å, whereas the class averages from the ∼400-kDa fraction showed diameters of up to 140 Å in the presence of detergent micelles. These findings indicate that the purified INX-6 channels are predominantly hemichannels in dodecyl maltoside and docked junction channels in octyl glucose neopentyl glycol. Dye transfer experiments revealed that the INX-6-GFP-His channels are permeable to 3- and 10-kDa tracers, whereas no significant amounts of these tracers passed through the Cx43-GFP channels. Based on these findings, INX-6 channels have a larger overall structure and greater permeability than connexin channels.

Oligomeric Structure and Functional Characterization of Caenorhabditis elegans Innexin-6 Gap Junction Protein*

PubMed Central

Oshima, Atsunori; Matsuzawa, Tomohiro; Nishikawa, Kouki; Fujiyoshi, Yoshinori

2013-01-01

Innexin is the molecular component of invertebrate gap junctions. Here we successfully expressed and purified Caenorhabditis elegans innexin-6 (INX-6) gap junction channels and characterized the molecular dimensions and channel permeability using electron microscopy (EM) and microinjection of fluorescent dye tracers, respectively. Negative staining and thin-section EM of isolated INX-6 gap junction membranes revealed a loosely packed hexagonal lattice and a greater cross-sectional width than that of connexin26 and connexin43 (Cx43)-GFP. In gel filtration analysis, the elution profile of purified INX-6 channels in dodecyl maltoside solution exhibited a peak at ∼400 kDa that was shifted to ∼800 kDa in octyl glucose neopentyl glycol. We also obtained the class averages of purified INX-6 channels from these peak fractions by single particle analysis. The class average from the ∼800-kDa fraction showed features of the junction form with a longitudinal height of 220 Å, a channel diameter of 110 Å in the absence of detergent micelles, and an extracellular gap space of 60 Å, whereas the class averages from the ∼400-kDa fraction showed diameters of up to 140 Å in the presence of detergent micelles. These findings indicate that the purified INX-6 channels are predominantly hemichannels in dodecyl maltoside and docked junction channels in octyl glucose neopentyl glycol. Dye transfer experiments revealed that the INX-6-GFP-His channels are permeable to 3- and 10-kDa tracers, whereas no significant amounts of these tracers passed through the Cx43-GFP channels. Based on these findings, INX-6 channels have a larger overall structure and greater permeability than connexin channels. PMID:23460640

Simple synthesis of carbon-11 labeled styryl dyes as new potential PET RNA-specific, living cell imaging probes.

PubMed

Wang, Min; Gao, Mingzhang; Miller, Kathy D; Sledge, George W; Hutchins, Gary D; Zheng, Qi-Huang

2009-05-01

A new type of styryl dyes have been developed as RNA-specific, live cell imaging probes for fluorescent microscopy technology to study nuclear structure and function. This study was designed to develop carbon-11 labeled styryl dyes as new probes for biomedical imaging technique positron emission tomography (PET) imaging of RNA in living cells. Precursors (E)-2-(2-(1-(triisopropylsilyl)-1H-indol-3-yl)vinyl)quinoline (2), (E)-2-(2,4,6-trimethoxystyryl)quinoline (3) and (E)-4-(2-(6-methoxyquinolin-2-yl)vinyl)-N,N-diemthylaniline (4), and standards styryl dyes E36 (6), E144 (7) and F22 (9) were synthesized in multiple steps with moderate to high chemical yields. Precursor 2 was labeled by [(11)C]CH(3)OTf, trapped on a cation-exchange CM Sep-Pak cartridge following a quick deprotecting reaction by addition of (n-Bu)(4)NF in THF, and isolated by solid-phase extraction (SPE) purification to provide target tracer [(11)C]E36 ([(11)C]6) in 40-50% radiochemical yields, decay corrected to end of bombardment (EOB), based on [(11)C]CO(2). The target tracers [(11)C]E144 ([(11)C]7) and [(11)C]F22 ([(11)C]9) were prepared by N-[(11)C]methylation of the precursors 3 and 4, respectively, using [(11)C]CH(3)OTf and isolated by SPE method in 50-70% radiochemical yields at EOB. The specific activity of the target tracers [(11)C]6, [(11)C]7 and [(11)C]9 was in a range of 74-111GBq/mumol at the end of synthesis (EOS).

Design and analysis of a natural-gradient ground-water tracer test in a freshwater tidal wetland, West Branch Canal Creek, Aberdeen Proving Ground, Maryland

USGS Publications Warehouse

Olsen, Lisa D.; Tenbus, Frederick J.

2005-01-01

A natural-gradient ground-water tracer test was designed and conducted in a tidal freshwater wetland at West Branch Canal Creek, Aberdeen Proving Ground, Maryland. The objectives of the test were to characterize solute transport at the site, obtain data to more accurately determine the ground-water velocity in the upper wetland sediments, and to compare a conservative, ionic tracer (bromide) to a volatile tracer (sulfur hexafluoride) to ascertain whether volatilization could be an important process in attenuating volatile organic compounds in the ground water. The tracer test was conducted within the upper peat unit of a layer of wetland sediments that also includes a lower clayey unit; the combined layer overlies an aquifer. The area selected for the test was thought to have an above-average rate of ground-water discharge based on ground-water head distributions and near-surface detections of volatile organic compounds measured in previous studies. Because ground-water velocities in the wetland sediments were expected to be slow compared to the underlying aquifer, the test was designed to be conducted on a small scale. Ninety-seven ?-inch-diameter inverted-screen stainless-steel piezometers were installed in a cylindrical array within approximately 25 cubic feet (2.3 cubic meters) of wetland sediments, in an area with a vertically upward hydraulic gradient. Fluorescein dye was used to qualitatively evaluate the hydrologic integrity of the tracer array before the start of the tracer test, including verifying the absence of hydraulic short-circuiting due to nonnatural vertical conduits potentially created during piezometer installation. Bromide and sulfur hexafluoride tracers (0.139 liter of solution containing 100,000 milligrams per liter of bromide ion and 23.3 milligrams per liter of sulfur hexafluoride) were co-injected and monitored to generate a dataset that could be used to evaluate solute transport in three dimensions. Piezometers were sampled 2 to 15 times each, from July 1998 through September 1999, to assess background conditions and monitor tracer movement. During the test, 644 samples were analyzed for fluorescein, 617 samples were analyzed for bromide with an ion-selective electrode, 213 samples were analyzed for bromide with colorimetric methods, and 603 samples were analyzed for sulfur hexafluoride, including samples collected prior to tracer injection to determine background concentrations. Additional samples were analyzed for volatile organic compounds (96 samples) and methane (37 samples) to determine the distribution of these contaminants and the extent of methanogenic conditions within the tracer array; however, these data were not used for the analysis of the test. During the tracer test, the fluorescein dye, bromide, and sulfur hexafluoride were transported predominantly in the upward direction, although all three tracers also moved outward in all directions from the injection point, and it is likely that some tracer mass moved beyond the lateral edges of the array. An analysis of the tracer-test data was performed through the use of breakthrough curves and isoconcentration contour plots. Results show that movement of the fluorescein dye, a non-conservative tracer, was retarded compared to the other two tracers, likely as a result of sorption onto the wetland sediments. Suspected loss of tracer mass along the lateral edges of the array prevented a straightforward quantitative analysis of tracer transport and ground-water velocity from the bromide and sulfur-hexafluoride data. In addition, the initial density of the bromide/sulfur hexafluoride solution (calculated to be 1.097 grams per milli2 Ground-Water Tracer Test, West Branch Canal Creek, Aberdeen Proving Ground, MD liter) could have caused the solution to sink below the injection point before undergoing dilution and moving back up into the array. For these reasons, the data analysis in this report was performed largely through qualitative method

Sentinel lymph node mapping in endometrial cancer: comparison of fluorescence dye with traditional radiocolloid and blue.

PubMed

Papadia, Andrea; Gasparri, Maria Luisa; Buda, Alessandro; Mueller, Michael D

2017-10-01

Sentinel lymph node (SLN) mapping in endometrial cancer (EMCA) is rapidly gaining acceptance in the clinical community. As compared to a full lymphadenectomy in every patient, to a selective lymphadenectomy after frozen section of uterus in selected patients with intrauterine risk factors or to a strategy in which a lymphadenectomy is always omitted, SLN mapping seems to be a reasonable and oncologically safe middle ground. Various protocols can be used when applying an SLN mapping. In this manuscript we review the characteristics, toxicity and clinical impact of technetium-99m radiocolloid (Tc-99m), of the blue dyes (methylene blue, isosulfan blue and patent blue) and of indocyanine green (ICG). ICG has an excellent toxicity profile, has higher overall and bilateral detection rates as compared to blue dyes and higher bilateral detection rates as compared to a combination of Tc-99m and blue dye. The detrimental effect of BMI on the detection rates is attenuated when ICG is used as a tracer. The ease of use of the ICG SLN mapping is perceived by the patients as a better quality of care delivered. Whenever possible, ICG should be favored over the other tracers for SLN mapping in EMCA patients.

Dye Tracer Tests to Determine Time-of-Travel in Iowa Streams, 1990-2006

USGS Publications Warehouse

Christiansen, Daniel E.

2009-01-01

Dye-tracing tests have been used by the U.S. Geological Survey, Iowa Water Science Center to determine the time-of-travel in selected Iowa streams from 1990-2006. Time-of-travel data are tabulated for 309 miles of stream reaches in four Iowa drainage basins: the Des Moines, Raccoon, Cedar, and Turkey Rivers. Time-of-travel was estimated in the Des Moines River, Fourmile Creek, North Raccoon River, Raccoon River, Cedar River, and Roberts Creek. Estimation of time-of-travel is important for environmental studies and in determining fate of agricultural constituents and chemical movement through a waterway. The stream reaches range in length from slightly more than 5 miles on Fourmile Creek, to more than 137 miles on the North Raccoon River. The travel times during the dye-tracer tests ranged from 7.5 hours on Fourmile Creek to as long as 200 hours on Roberts Creek; velocities ranged from less than 4.50 feet per minute on Roberts Creek to more than 113 feet per minute on the Cedar River.

Determination of stream reaeration coefficients by use of tracers

USGS Publications Warehouse

Kilpatrick, F.A.; Rathbun, R.E.; Yotsukura, Nobuhiro; Parker, G.W.; DeLong, L.L.

1989-01-01

Stream reaeration is the physical absorption of oxygen from the atmosphere by a flowing stream. This is the primary process by which a stream replenishes the oxygen consumed in the biodegradation of organic wastes. Prior to 1965, reaeration rate coefficients could be estimated only by indirect methods. In 1965, a direct method of measuring stream reaeration coefficients was developed whereby a radioactive tracer gas was injected into a stream-the principle being that the tracer gas would be desorbed from the stream inversely to how oxygen would be absorbed. The technique has since been modified by substituting hydrocarbon gases for the radioactive tracer gas. This manual describes the slug-injection and constant-rate-injection methods of measuring gas-tracer desorption. Emphasis is on the use of rhodamine WT dye as a relatively conservative tracer and propane as the nonconservative gas tracer, on planning field tests, on methods of injection, sampling, and analysis, and on techniques for computing desorption and reaeration coefficients.

Tracer injection sites and combinations for sentinel lymph node detection in patients with endometrial cancer.

PubMed

Niikura, Hitoshi; Kaiho-Sakuma, Michiko; Tokunaga, Hideki; Toyoshima, Masafumi; Utsunomiya, Hiroki; Nagase, Satoru; Takano, Tadao; Watanabe, Mika; Ito, Kiyoshi; Yaegashi, Nobuo

2013-11-01

The aim of the present study was to clarify the most effective combination of injected tracer types and injection sites in order to detect sentinel lymph nodes (SLNs) in early endometrial cancer. The study included 100 consecutive patients with endometrial cancer treated at Tohoku University Hospital between June 2001 and December 2012. The procedure for SLN identification entailed either radioisotope (RI) injection into the endometrium during hysteroscopy (55 cases) or direct RI injection into the uterine cervix (45 cases). A combination of blue dye injected into the uterine cervix or uterine body intraoperatively in addition to preoperative RI injection occurred in 69 of 100 cases. All detected SLNs were recorded according to the individual tracer and the resultant staging from this method was compared to the final pathology of lymph node metastases including para-aortic nodes. SLN detection rate was highest (96%) by cervical RI injection; however, no SLNs were detected in para-aortic area. Para-aortic SLNs were detected only by hysteroscopic RI injection (56%). All cases with pelvic lymph node metastases were detected by pelvic SLN biopsy. Isolated positive para-aortic lymph nodes were detected in 3 patients. Bilateral SLN detection rate was high (96%; 26 of 27 cases) by cervical RI injection combined with dye. RI injection into the uterine cervix is highly sensitive in detection of SLN metastasis in early stage endometrial cancer. It is a useful and safe modality when combined with blue dye injection into the uterine body. © 2013.

Determination of traveltimes in the lower San Joaquin River basin, California, from dye-tracer studies during 1994-1995

USGS Publications Warehouse

Kratzer, Charles R.; Biagtan, Rhoda N.

1997-01-01

Dye-tracer studies were done in the lower San Joaquin River Basin in February 1994, June 1994, and February 1995. Dye releases were made in the Merced River (February 1994), Salt Slough (June 1994), Tuolumne River (February 1995), and Dry Creek (February 1995). The traveltimes determined in the studies aided the interpretation of pesticide data collected during storm sampling and guided sample collection during a Lagrangian pesticide study. All three studies used rhodamine WT 20-percent dye solution, which was released as a slug in midstream. The mean traveltime determined in the dye studies were compared to estimates based on regression equations of mean stream velocity as a function of streamflow. Dye recovery, the ratio of the calculated dye load at downstream sites to the initial amount of dye released, was determined for the 1994 studies and a dye-dosage formula was evaluated for all studies. In the February 1994 study, mean traveltime from the Merced River at River Road to the San Joaquin River near Vernalis (46.8 river miles) was 38.5 hours, and to the Delta-Mendota Canal at Tracy pumps (84.3 river miles) was 90.4 hours. In the June 1994 study, mean traveltime from Salt Slough at Highway 165 to Vernalis (64.0 river miles) was 80.1 hours. In the February 1995 study, the mean traveltime from the Tuolumne River at Roberts Ferry to Vernalis (51.5 river miles) was 35.8 hours. For the 1994 studies, the regression equations provided suitable estimates of travel-time, with ratios of estimated traveltime to mean dye traveltime of 0.94 to 1.08. However, for the 1995 dye studies, the equations considerably underestimated traveltime, with ratios of 0.49 to 0.73.In the February 1994 study, 70 percent of the dye released was recovered at Vernalis and 35percent was recovered at the Delta-Mendota Canal at Tracy pumps. In the June 1994 study, recovery was 61 percent at Patterson, 43 percent just upstream of the Tuolumne River confluence, and 37 percent at Vernalis. The dye-dosage formula overestimated the dye required for a given downstream concentration for the 1994 studies by ratios of 1.07 to 2.12. The ratios for the February 1995 studies were 0.67 to 0.95 for the Tuolumne River and 1.21 for Dry Creek. In all studies, the estimates improved with length of dye study.

Novel benzanthrone probes for membrane and protein studies

NASA Astrophysics Data System (ADS)

Ryzhova, Olga; Vus, Kateryna; Trusova, Valeriya; Kirilova, Elena; Kirilov, Georgiy; Gorbenko, Galyna; Kinnunen, Paavo

2016-09-01

The applicability of a series of novel benzanthrone dyes to monitoring the changes in physicochemical properties of lipid bilayer and to differentiating between the native and aggregated protein states has been evaluated. Based on the quantitative parameters of the dye-membrane and dye-protein binding derived from the fluorimetric titration data, the most prospective membrane probes and amyloid tracers have been selected from the group of examined compounds. Analysis of the red edge excitation shifts of the membrane- and amyloid-bound dyes provided information on the properties of benzanthrone binding sites within the lipid and protein matrixes. To understand how amyloid specificity of benzanthrones correlates with their structure, quantitative structure activity relationship (QSAR) analysis was performed involving a range of quantum chemical molecular descriptors. A statistically significant model was obtained for predicting the sensitivity of novel benzanthrone dyes to amyloid fibrils.

Sentinel lymph nodes in endometrial cancer: is hysteroscopic injection valid?

PubMed

Clement, D; Bats, A S; Ghazzar-Pierquet, N; Le Frere Belda, M A; Larousserie, F; Nos, C; Lecuru, F

2008-01-01

We aimed to describe hysteroscopic peritumoral tracer injection for detecting sentinel lymph nodes (SLNs) in patients with endometrial cancer and to evaluate tolerance of the procedure, detection rate and location of SLNs. Five patients with early endometrial cancer underwent hysteroscopic radiotracer injection followed by lymphoscintigraphy, then by surgery with hysteroscopic peritumoral blue dye injection, and radioactivity measurement using an endoscopic handheld gamma probe. SLNs and other nodes were sent separately to the pathology laboratory. SLNs were evaluated by hematoxylin-eosin-saffron staining and, when negative, by immunohistochemistry. Tolerance of the injection by the patients was poor (mean visual analog scale score, 8/10). SLNs were detected in only two patients (external iliac and common iliac+paraaortic, respectively). Detection rates were 1/5 by radiotracer, 1/5 by dye, and 2/5 by the combined method. One SLN was involved in a patient whose other nodes were negative. In three patients no SLNs were found by radiotracer or blue dye. Of the 83 non sentinel nodes removed from these patients, none was involved. Hysteroscopic peritumoral injection may be more difficult than cervical injection and, in our experience, carries a lower SLN detection rate.

Does drought alter hydrological functions in forest soils?

NASA Astrophysics Data System (ADS)

Gimbel, Katharina F.; Puhlmann, Heike; Weiler, Markus

2016-04-01

Climate change is expected to impact the water cycle and severely affect precipitation patterns across central Europe and in other parts of the world, leading to more frequent and severe droughts. Usually when projecting drought impacts on hydrological systems, it is assumed that system properties, like soil properties, remain stable and will not be affected by drought events. To study if this assumption is appropriate, we address the effects of drought on the infiltration behavior of forest soils using dye tracer experiments on six sites in three regions across Germany, which were forced into drought conditions. The sites cover clayey-, loamy- and sandy-textured soils. In each region, we compared a deciduous and a coniferous forest stand to address differences between the main tree species. The results of the dye tracer experiments show clear evidence for changes in infiltration behavior at the sites. The infiltration changed at the clayey plots from regular and homogeneous flow to fast preferential flow. Similar behavior was observed at the loamy plots, where large areas in the upper layers remained dry, displaying signs of strong water repellency. This was confirmed by water drop penetration time (WDPT) tests, which revealed, in all except one plot, moderate to severe water repellency. Water repellency was also accountable for the change of regular infiltration to fingered flow in the sandy soils. The results of this study suggest that the drought history or, more generally, the climatic conditions of a soil in the past are more important than the actual antecedent soil moisture status regarding hydrophobicity and infiltration behavior; furthermore, drought effects on infiltration need to be considered in hydrological models to obtain realistic predictions concerning water quality and quantity in runoff and groundwater recharge.

Identification of small-scale low and high permeability layers using single well forced-gradient tracer tests: fluorescent dye imaging and modelling at the laboratory-scale.

PubMed

Barns, Gareth L; Thornton, Steven F; Wilson, Ryan D

2015-01-01

Heterogeneity in aquifer permeability, which creates paths of varying mass flux and spatially complex contaminant plumes, can complicate the interpretation of contaminant fate and transport in groundwater. Identifying the location of high mass flux paths is critical for the reliable estimation of solute transport parameters and design of groundwater remediation schemes. Dipole flow tracer tests (DFTTs) and push-pull tests (PPTs) are single well forced-gradient tests which have been used at field-scale to estimate aquifer hydraulic and transport properties. In this study, the potential for PPTs and DFTTs to resolve the location of layered high- and low-permeability layers in granular porous media was investigated with a pseudo 2-D bench-scale aquifer model. Finite element fate and transport modelling was also undertaken to identify appropriate set-ups for in situ tests to determine the type, magnitude, location and extent of such layered permeability contrasts at the field-scale. The characteristics of flow patterns created during experiments were evaluated using fluorescent dye imaging and compared with the breakthrough behaviour of an inorganic conservative tracer. The experimental results show that tracer breakthrough during PPTs is not sensitive to minor permeability contrasts for conditions where there is no hydraulic gradient. In contrast, DFTTs are sensitive to the type and location of permeability contrasts in the host media and could potentially be used to establish the presence and location of high or low mass flux paths. Numerical modelling shows that the tracer peak breakthrough time and concentration in a DFTT is sensitive to the magnitude of the permeability contrast (defined as the permeability of the layer over the permeability of the bulk media) between values of 0.01-20. DFTTs are shown to be more sensitive to deducing variations in the contrast, location and size of aquifer layered permeability contrasts when a shorter central packer is used. However, larger packer sizes are more likely to be practical for field-scale applications, with fewer tests required to characterise a given aquifer section. The sensitivity of DFTTs to identify layered permeability contrasts was not affected by test flow rate. Copyright © 2014 Elsevier B.V. All rights reserved.

Measurement of the reaeration coefficients of the North Fork Licking River at Utica, Ohio by radioactive tracers

USGS Publications Warehouse

Hren, Janet

1983-01-01

Reaeration coefficients of the North Fork Licking River at Utica, Ohio were measured by the radioactive-tracer method. The tests were conducted on a 2.1-mile reach on September 23 and October 7, 1981, during low-flow conditions. Krypton-85 gas and tritium were the radioopactive tracers, which were used in conjunction with rhodamine-WT dye. The reaertion coefficients determined on September 23 were 3.09 days-1 (subreach 1-2) and 3.32 days-1 (subreach 2-3). On October 7, the values were 2.04 days -1 and 2.23 days-1 respectively.

A Transient Cell-shielding Method for Viable MSC Delivery Within Hydrophobic Scaffolds Polymerized in situ

DTIC Science & Technology

2015-03-27

cell nutrients and wastes than swollen hydrogels. While hydrophobic biomaterials such as PUR provide a generalizable, biodegradable platform for tissue...Culture of cellularized PUR scaffolds Rat BMSCs were stained with a cytoplasmic dye (VyBrant® CFDA SE Cell Tracer Kit, Life Technologies, per the...growth, adipogenic, or osteo- genic media for up to 21 days and stained with Oil Red O or Alizarin Red S. After staining, dyes were dissolved in

Form and function in hillslope hydrology: in situ imaging and characterization of flow-relevant structures

NASA Astrophysics Data System (ADS)

Jackisch, Conrad; Angermann, Lisa; Allroggen, Niklas; Sprenger, Matthias; Blume, Theresa; Tronicke, Jens; Zehe, Erwin

2017-07-01

The study deals with the identification and characterization of rapid subsurface flow structures through pedo- and geo-physical measurements and irrigation experiments at the point, plot and hillslope scale. Our investigation of flow-relevant structures and hydrological responses refers to the general interplay of form and function, respectively. To obtain a holistic picture of the subsurface, a large set of different laboratory, exploratory and experimental methods was used at the different scales. For exploration these methods included drilled soil core profiles, in situ measurements of infiltration capacity and saturated hydraulic conductivity, and laboratory analyses of soil water retention and saturated hydraulic conductivity. The irrigation experiments at the plot scale were monitored through a combination of dye tracer, salt tracer, soil moisture dynamics, and 3-D time-lapse ground penetrating radar (GPR) methods. At the hillslope scale the subsurface was explored by a 3-D GPR survey. A natural storm event and an irrigation experiment were monitored by a dense network of soil moisture observations and a cascade of 2-D time-lapse GPR trenches. We show that the shift between activated and non-activated state of the flow paths is needed to distinguish structures from overall heterogeneity. Pedo-physical analyses of point-scale samples are the basis for sub-scale structure inference. At the plot and hillslope scale 3-D and 2-D time-lapse GPR applications are successfully employed as non-invasive means to image subsurface response patterns and to identify flow-relevant paths. Tracer recovery and soil water responses from irrigation experiments deliver a consistent estimate of response velocities. The combined observation of form and function under active conditions provides the means to localize and characterize the structures (this study) and the hydrological processes (companion study Angermann et al., 2017, this issue).

Statistical analysis and mathematical modeling of a tracer test on the Santa Clara River, Ventura County, California

USGS Publications Warehouse

Paybins, Katherine S.; Nishikawa, Tracy; Izbicki, John A.; Reichard, Eric G.

1998-01-01

To better understand flow processes, solute-transport processes, and ground-water/surface-water interactions on the Santa Clara River in Ventura County, California, a 24-hour fluorescent-dye tracer study was performed under steady-state flow conditions on a 28-mile reach of the river. The study reach includes perennial (uppermost and lowermost) subreaches and ephemeral subreaches of the lower Piru Creek and the middle Santa Clara River. Dye was injected at a site on Piru Creek, and fluorescence of river water was measured continuously at four sites and intermittently at two sites. Discharge measurements were also made at the six sites. The time of travel of the dye, peak dye concentration, and time-variance of time-concentration curves were obtained at each site. The long tails of the time-concentration curves are indicative of sources/sinks within the river, such as riffles and pools, or transient bank storage. A statistical analysis of the data indicates that, in general, the transport characteristics follow Fickian theory. These data and previously collected discharge data were used to calibrate a one-dimensional flow model (DAFLOW) and a solute-transport model (BLTM). DAFLOW solves a simplified form of the diffusion-wave equation and uses empirical relations between flow rate and cross-sectional area, and flow rate and channel width. BLTM uses the velocity data from DAFLOW and solves the advection-dispersion transport equation, including first-order decay. The simulations of dye transport indicated that (1) ground-water recharge explains the loss of dye mass in the middle, ephemeral, subreaches, and (2) ground-water recharge does not explain the loss of dye mass in the uppermost and lowermost, perennial, subreaches. This loss of mass was simulated using a linear decay term. The loss of mass in the perennial subreaches may be caused by a combination of photodecay or adsorption/desorption.

Impingement of Cloud Droplets on 36.5-Percent-Thick Joukowski Airfoil at Zero Angle of Attack and Discussion of Use as Cloud Measuring Instrument in Dye-Tracer Technique

NASA Technical Reports Server (NTRS)

Brun, R. J.; Vogt, Dorothea E.

1957-01-01

The trajectories of droplets i n the air flowing past a 36.5-percent-thick Joukowski airfoil at zero angle of attack were determined. The amount of water i n droplet form impinging on the airfoil, the area of droplet impingement, and the rate of droplet impingement per unit area on the airfoil surface were calculated from the trajectories and cover a large range of flight and atmospheric conditions. With the detailed impingement information available, the 36.5-percent-thick Joukowski airfoil can serve the dual purpose of use as the principal element in instruments for making measurements in clouds and of a basic shape for estimating impingement on a thick streamlined body. Methods and examples are presented for illustrating some limitations when the airfoil is used as the principal element in the dye-tracer technique.

Time of travel and dispersion in a selected reach of Roberts Creek, Clayton County, Iowa

USGS Publications Warehouse

Kolpin, D.W.; Kalkhoff, S.J.

1992-01-01

Time of travel was determined by dye tracing, using rhodamine WT as the tracer. One dyeinjection site and three sampling sites were used to measure time of travel. Two dye-tracing tests were conducted at discharges having flow-duration values of 48 and 80 percent. The discharges at the time of the two dye-tracing tests approximated medium- and low-flow conditions. The average stream velocity in the study area was 0.23 foot per second during medium-flow conditions, March 20 to 22,1990, and 0.07 foot per second during low-flow conditions, April 30 to May 12, 1990. The injected dye dispersed in a plume that lasted about 18 hours during medium flow and about 64 hours during low flow at the downstream site.

Transient storage assessments of dye-tracer injections in rivers of the Willamette Basin, Oregon

USGS Publications Warehouse

Laenen, A.; Bencala, K.E.

2001-01-01

Rhodamine WT dye-tracer injections in rivers of the Willamette Basin yield concentration-time curves with characteristically long recession times suggestive of active transient storage processes. The scale of drainage areas contributing to the stream reaches studied in the Willamette Basin ranges from 10 to 12,000 km2. A transient storage assessment of the tracer studies has been completed using the U.S. Geological Survey's One-dimensional Transport with Inflow and Storage (OTIS) model, which incorporates storage exchange and decay functions along with the traditional dispersion and advection transport equation. The analysis estimates solute transport of the dye. It identifies first-order decay coefficients to be on the order of 10-5/sec for the nonconservative Rhodamine WT. On an individual subreach basis, the first-order decay is slower (typically by an order of magnitude) than the transient storage process, indicating that nonconservative tracers may be used to evaluate transient storage in rivers. In the transient storage analysis, a dimensionless parameter (As/A) expresses the spatial extent of storage zone area relative to stream cross section. In certain reaches of Willamette Basin pool-and-riffle, gravel-bed rivers, this parameter was as large as 0.5. A measure of the storage exchange flux was calculated for each stream subreach in the simulation analysis. This storage exchange is shown subjectively to be higher at higher stream discharges. Hyporheic linkage between streams and subsurface flows is the probable physical mechanism contributing to a significant part of this inferred active transient storage. Hyporheic linkages are further suggested by detailed measurements of river discharge with an Acoustic Doppler Current Profiler system delineating zones in two large rivers where water alternately enters and leaves the surface channels through graveland-cobble riverbeds. Measurements show patterns of hyporheic exchange that are highly variable in time and space.

Detection Limits for Spectro-fluorometry: A Case Study in the Region of Finstersee, Canton Zug, Northern Switzerland

NASA Astrophysics Data System (ADS)

Otz, M. H.; Otz, H. K.; Keller, P.

2002-05-01

Synthetic fluorescent dyes, applied below the visual detection limit (< 0.1 mg/L), have been used as tracers of ground water flow paths since the beginning of the 1950s. Since 1965, we have used spectro-fluorometers with photomultipliers to measure low concentrations of fluorescent dyes in ground water in Switzerland. In collaboration with the Engineering Geology Department of the ETH, we have separated uranine at 0.1 ng/L and Na-naphtionate at 1 ng/L from background fluorescence of spring water in the Finstersee region. These values are 10-100 times lower than postulated detection limits in the literature. The use of low dye concentrations prevents a study region from being contaminated by increased background levels due to remnant dye within the aquifer, thereby leaving the region available for future dye tracing studies. Lower detection limits also can solve particular hydraulic problems where conventional methods fail and enhance the possibility for using artificial dyes in environmentally sensitive aquifer settings.

Automatic tracer-dilution method used for stage-discharge ratings and streamflow hydrographs on small Iowa streams

USGS Publications Warehouse

Soenksen, P.J.

1990-01-01

Tracer-dilution discharge measurements were made during 14 flow periods at six stations from 1986 through 1988 water years. Ratings were developed at three stations with the aid of these measurements. A loop rating was identified at one station during rapidly-changing flow conditions. Incomplete mixing and dye loss to sediment apparently were problems at some stations. Stage hydrographs were recorded for 38 flows at seven stations. Limited data on background fluorescence during high flows were also obtained.

An examination of short-term variations in water quality at a karst spring in Kentucky

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ryan, M.; Meiman, J.

1996-01-01

Water quality at many karst springs undergoes very high amplitude but relatively brief degradation following influxes of runoff. Accurately recording transient variations requires more rigorous sampling strategies than traditional methods. A pilot study to determine the usefulness of high-frequency, flow-dependent sampling strategies, combined with coincidental quantitative dye tracer tests, was implemented in the Big Spring Ground-Water Basin in Mammoth Cave National Park, Kentucky. Data recorded following two separate runoff events showed that the concentrations of two nonpoint source pollutants, fecal coliform bacteria and suspended sediment, greatly exceeded prerunoff event values for very short periods of time. A phreatic conduit segment,more » calculated at 17 million liters in volume, instantaneously propagated head changes, caused by direct runoff entering the aquifer, from the ground-water inputs to Big Spring. A significant delay between the initial increases in discharge and the arrival of direct runoff, as indicated by a steady decrease in specific conductance, represented the time required to displace this volume of phreatic water. The delay showed that sampling a karst spring only during peak discharge would be an unreliable sampling method. Runoff from two different subcatchments was tagged with tracer dye and the timing of the passage of the resultant dye clouds through Big Spring were compared to water quality variations. Distinct lag times between the arrival of direct runoff at Big Spring and the bacteria and suspended sediment waveforms were shown through the concurrent quantitative tracer tests to be related to the areal distribution of land-cover type within the basin.« less

Adenosine receptor agonist NECA increases cerebral extravasation of fluorescein and low molecular weight dextran independent of blood-brain barrier modulation

PubMed Central

Cheng, Chih-Chung; Yang, Ya Lan; Liao, Kate Hsiurong; Lai, Ted Weita

2016-01-01

Conventional methods for therapeutic blood-brain barrier (BBB) disruption facilitate drug delivery but are cumbersome to perform. A previous study demonstrated that adenosine receptor (AR) stimulation by 5′-N-ethylcarboxamide adenosine (NECA) increased the extravasation of intravascular tracers into the brain and proposed that AR agonism may be an effective method for therapeutic BBB disruption. We attempted to confirm the extravasation of tracers into the brain and also investigated tracer extravasation into peripheral organs and tracer retention in the blood. We found that NECA not only increased the extravasation of intravascular fluorescein and low molecular weight dextran into the brain of mice but also increased the concentrations of these tracers in the blood. In fact, the brain:blood ratio-normalized BBB permeability for either tracer is actually decreased by NECA administration. Elevated blood urea nitrogen levels in mice following NECA treatment suggested that renal function impairment was a probable cause of tracer retention. Therefore, NECA has almost no effect on the extravasation of intravascular Evans blue dye (EBD), an albumin-binding tracer with little renal clearance. Rather than inducing BBB disruption, our study demonstrated that NECA increased tracer extravasation into the brain by increasing the concentration gradient of the tracer across the BBB. PMID:27025761

Adenosine receptor agonist NECA increases cerebral extravasation of fluorescein and low molecular weight dextran independent of blood-brain barrier modulation.

PubMed

Cheng, Chih-Chung; Yang, Ya Lan; Liao, Kate Hsiurong; Lai, Ted Weita

2016-03-30

Conventional methods for therapeutic blood-brain barrier (BBB) disruption facilitate drug delivery but are cumbersome to perform. A previous study demonstrated that adenosine receptor (AR) stimulation by 5'-N-ethylcarboxamide adenosine (NECA) increased the extravasation of intravascular tracers into the brain and proposed that AR agonism may be an effective method for therapeutic BBB disruption. We attempted to confirm the extravasation of tracers into the brain and also investigated tracer extravasation into peripheral organs and tracer retention in the blood. We found that NECA not only increased the extravasation of intravascular fluorescein and low molecular weight dextran into the brain of mice but also increased the concentrations of these tracers in the blood. In fact, the brain:blood ratio-normalized BBB permeability for either tracer is actually decreased by NECA administration. Elevated blood urea nitrogen levels in mice following NECA treatment suggested that renal function impairment was a probable cause of tracer retention. Therefore, NECA has almost no effect on the extravasation of intravascular Evans blue dye (EBD), an albumin-binding tracer with little renal clearance. Rather than inducing BBB disruption, our study demonstrated that NECA increased tracer extravasation into the brain by increasing the concentration gradient of the tracer across the BBB.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karingithi, C.W.

Tracer and injection tests were performed in the Olkaria North East Field with the objective to reduce uncertainty in the engineering design and to determine the suitability of well OW-704 as a re-injection well for the waste brine from the steam field during production. An organic dye (sodium fluorescein) was injected into well OW-704 as a slug. The tracer returns were observed in well OW-M2 which is 580 m deep, 620 m from well OW-704 and well OW-716 which is 900 m from well OW-704. The other wells on discharge, OW-714, and OW-725 did not show any tracer returns. However,more » other chemical constituents suggested., that well OW-716 experienced a chemical breakthrough earlier than OW-M2. Tracer return velocities of 0.31 m/hr and 1.3 m/hr were observed. Results of the tracer and injection tests indicate that OW-704 may be used as a re-injection well provided a close monitoring program is put in place.« less

Doublet tracer tests to determine the contaminant flushing properties of a municipal solid waste landfill.

PubMed

Woodman, N D; Rees-White, T C; Beaven, R P; Stringfellow, A M; Barker, J A

2017-08-01

This paper describes a programme of research investigating horizontal fluid flow and solute transport through saturated municipal solid waste (MSW) landfill. The purpose is to inform engineering strategies for future contaminant flushing. Solute transport between injection/abstraction well pairs (doublets) is investigated using three tracers over five separate tests at well separations between 5m and 20m. Two inorganic tracers (lithium and bromide) were used, plus the fluorescent dye tracer, rhodamine-WT. There was no evidence for persistent preferential horizons or pathways at the inter-well scale. The time for tracer movement to the abstraction wells varied with well spacing as predicted for a homogeneous isotropic continuum. The time for tracer movement to remote observation wells was also as expected. Mobile porosity was estimated as ~0.02 (~4% of total porosity). Good fits to the tracer breakthrough data were achieved using a dual-porosity model, with immobile regions characterised by block diffusion timescales in the range of about one to ten years. This implies that diffusional exchanges are likely to be very significant for engineering of whole-site contaminant flushing and possibly rate-limiting. Copyright © 2017. Published by Elsevier B.V.

Doublet tracer tests to determine the contaminant flushing properties of a municipal solid waste landfill

NASA Astrophysics Data System (ADS)

Woodman, N. D.; Rees-White, T. C.; Beaven, R. P.; Stringfellow, A. M.; Barker, J. A.

2017-08-01

This paper describes a programme of research investigating horizontal fluid flow and solute transport through saturated municipal solid waste (MSW) landfill. The purpose is to inform engineering strategies for future contaminant flushing. Solute transport between injection/abstraction well pairs (doublets) is investigated using three tracers over five separate tests at well separations between 5 m and 20 m. Two inorganic tracers (lithium and bromide) were used, plus the fluorescent dye tracer, rhodamine-WT. There was no evidence for persistent preferential horizons or pathways at the inter-well scale. The time for tracer movement to the abstraction wells varied with well spacing as predicted for a homogeneous isotropic continuum. The time for tracer movement to remote observation wells was also as expected. Mobile porosity was estimated as 0.02 ( 4% of total porosity). Good fits to the tracer breakthrough data were achieved using a dual-porosity model, with immobile regions characterised by block diffusion timescales in the range of about one to ten years. This implies that diffusional exchanges are likely to be very significant for engineering of whole-site contaminant flushing and possibly rate-limiting.

Infiltration pattern in a regolith-fractured bedrock profile: field observation of a dye stain pattern

NASA Astrophysics Data System (ADS)

Kim, Jae Gon; Lee, Gyoo Ho; Lee, Jin-Soo; Chon, Chul-Min; Kim, Tack Hyun; Ha, Kyoochul

2006-02-01

We examined the infiltration pattern of water in a regolith-bedrock profile consisting of two overburdens (OB1 and OB2), a buried rice paddy soil (PS), two texturally distinctive weathered materials (WM1 and WM2) and a fractured sedimentary rock (BR), using a Brilliant Blue FCF dye tracer. A black-coloured coating in conducting fractures in WM1, WM2 and BR was analysed by X-ray diffraction and scanning electron microscopy. The dye tracer penetrated to greater than 2 m depth in the profile. The macropore flow and saturated interflow were the major infiltration patterns in the profile. Macropore flow and saturated interflow were observed along fractures in WM1, WM2 and BR and at the dipping interfaces of PS-WM1, PS-WM2 and PS-BR respectively. Heterogeneous matrix flow occurred in upper overburden (OB1) and PS. Compared with OB1, the coarser textured OB2 acted as a physical barrier for vertical flow of water. The PS with low bulk density and many fine roots was another major conducting route of water in the profile. Manganese oxide and iron oxide were positively identified in the black coating material and had low crystallinity and high surface area, indicating their high reactivity with conducting contaminants.

Simultaneous velocity and pressure quantification using pressure-sensitive flow tracers in air

NASA Astrophysics Data System (ADS)

Zhang, Peng; Peterson, Sean; Porfiri, Maurizio

2017-11-01

Particle-based measurement techniques for assessing the velocity field of a fluid have advanced rapidly over the past two decades. Full-field pressure measurement techniques have remained elusive, however. In this work, we aim to demonstrate the possibility of direct simultaneous planar velocity and pressure measurement of a high speed aerodynamic flow by employing novel pressure-sensitive tracer particles for particle image velocimetry (PIV). Specifically, the velocity and pressure variations of an airflow through a converging-diverging channel are studied. Polystyrene microparticles embedded with a pressure-sensitive phosphorescent dye-platinum octaethylporphyrin (PtOEP)-are used as seeding particles. Due to the oxygen quenching effect, the emission lifetime of PtOEP is highly sensitive to the oxygen concentration, that is, the partial pressure of oxygen, in the air. Since the partial pressure of oxygen is linearly proportional to the air pressure, we can determine the air pressure through the phosphorescence emission lifetime of the dye. The velocity field is instead obtained using traditional PIV methods. The particles have a pressure resolution on the order of 1 kPa, which may be improved by optimizing the particle size and dye concentration to suit specific flow scenarios. This work was supported by the National Science Foundation under Grant Number CBET-1332204.

The use of vitamins as tracer dyes for laser-induced fluorescence in liquid flow applications

NASA Astrophysics Data System (ADS)

Zähringer, Katharina

2014-04-01

Tracers commonly used in experimental flow studies are mostly nocuous to the environment and human health. Particularly, in large flow installations, this can become a problem. In this study, a solution of this problem is presented, based on using water-soluble vitamins. Five of them are examined here for their applicability in flow studies. Vitamins B2 and B6 turned out to be the most promising candidates, and the dependency of their fluorescence intensity on parameters like concentration, laser energy, temperature, and pH are determined for two commonly used laser excitation wavelengths (532, 355 nm). Two examples of application in a static mixer and a spray flow are shown and demonstrate the applicability of the vitamin tracers.

A multi-indicator approach for identifying shoreline sewage pollution hotspots adjacent to coral reefs.

PubMed

Abaya, Leilani M; Wiegner, Tracy N; Colbert, Steven L; Beets, James P; Carlson, Kaile'a M; Kramer, K Lindsey; Most, Rebecca; Couch, Courtney S

2018-04-01

Sewage pollution is contributing to the global decline of coral reefs. Identifying locations where it is entering waters near reefs is therefore a management priority. Our study documented shoreline sewage pollution hotspots in a coastal community with a fringing coral reef (Puakō, Hawai'i) using dye tracer studies, sewage indicator measurements, and a pollution scoring tool. Sewage reached shoreline waters within 9 h to 3 d. Fecal indicator bacteria concentrations were high and variable, and δ 15 N macroalgal values were indicative of sewage at many stations. Shoreline nutrient concentrations were two times higher than those in upland groundwater. Pollution hotspots were identified with a scoring tool using three sewage indicators. It confirmed known locations of sewage pollution from dye tracer studies. Our study highlights the need for a multi-indicator approach and scoring tool to identify sewage pollution hotspots. This approach will be useful for other coastal communities grappling with sewage pollution. Copyright © 2018 Elsevier Ltd. All rights reserved.

Tracer tests and the structure of permeability in the Corallian limestone aquifer of northern England, UK

NASA Astrophysics Data System (ADS)

Foley, Aidan; Cachandt, Gerd; Franklin, Janine; Willmore, Fergus; Atkinson, Tim

2012-05-01

The Corallian limestone of northern England (UK) is widely exploited for water supplies and exhibits the karstic phenomena of sinking rivers, conduit development and groundwater velocities of several kilometres per day. To test a number of model-derived source protection zones and elucidate contaminant transport mechanisms in the aquifer, three tracer tests were conducted from a set of swallow-holes draining the River Derwent toward public water supply wells in the eastern part of the aquifer. Tracers used included: Enterobacter cloacae (bacteriophage), Photine C (optical brightener), sodium fluorescein (fluorescent dye) and sulphur hexafluoride (dissolved gas), the varying properties of which make them suitable analogues for different types of potential contaminant. Observed tracer transport times and arrival patterns indicate that tracer transport occurs through karstic channels embedded in a network of primary fissures which exert control over tracer concentrations once initial tracer plumes have passed. A dipole flow system is observed between the swallow-holes and the closest abstraction well, whilst previously modelled source protection zones do not accurately reflect either groundwater velocity or those areas of the aquifer supplying the wells. These findings imply that managing such aquifers for potential contamination should rely upon empirical tracer evidence for source-protection zone modelling.

Influence of selected fluorescent dyes on small aquatic organisms

NASA Astrophysics Data System (ADS)

Rowiński, Paweł; Chrzanowski, Marcin

2011-02-01

Rhodamine B and Rhodamine WT are fluorescent dyes commonly used as tracers in hydrological investigations. Since introducing intensely red substances into rivers raises understandable doubts of ecological nature, the authors aimed at examining the influence of these dyes on small water fauna using bioindication methods. Quantitative results, calculated with the use of Bliss-Weber probit statistical method, were achieved by means of standardized ecotoxicological tests containing ready-to-hatch resting forms of fairy shrimp (Thamnocephalus platyurus). Qualitative studies included observation of water flea crustacean (Daphnia magna) and horned planorbis snail (Planorbis corneus), both typically present in rivers and representative for temperate climate, as well as guppy fish (Poecilla reticulata), paramecium protozoan (Paramaecium caudatum) and the above-mentioned fairy shrimp. The investigation revealed that both dyes in concentrations used for hydrological purposes are low enough to exert almost no toxic impact on water fauna considered.

Direct experimental visualization of the global Hamiltonian progression of two-dimensional Lagrangian flow topologies from integrable to chaotic state.

PubMed

Baskan, O; Speetjens, M F M; Metcalfe, G; Clercx, H J H

2015-10-01

Countless theoretical/numerical studies on transport and mixing in two-dimensional (2D) unsteady flows lean on the assumption that Hamiltonian mechanisms govern the Lagrangian dynamics of passive tracers. However, experimental studies specifically investigating said mechanisms are rare. Moreover, they typically concern local behavior in specific states (usually far away from the integrable state) and generally expose this indirectly by dye visualization. Laboratory experiments explicitly addressing the global Hamiltonian progression of the Lagrangian flow topology entirely from integrable to chaotic state, i.e., the fundamental route to efficient transport by chaotic advection, appear non-existent. This motivates our study on experimental visualization of this progression by direct measurement of Poincaré sections of passive tracer particles in a representative 2D time-periodic flow. This admits (i) accurate replication of the experimental initial conditions, facilitating true one-to-one comparison of simulated and measured behavior, and (ii) direct experimental investigation of the ensuing Lagrangian dynamics. The analysis reveals a close agreement between computations and observations and thus experimentally validates the full global Hamiltonian progression at a great level of detail.

A multi-directional tracer test in the fractured Chalk aquifer of E. Yorkshire, UK.

PubMed

Hartmann, S; Odling, N E; West, L J

2007-12-07

A multi-borehole radial tracer test has been conducted in the confined Chalk aquifer of E. Yorkshire, UK. Three different tracer dyes were injected into three injection boreholes and a central borehole, 25 m from the injection boreholes, was pumped at 330 m(3)/d for 8 days. The breakthrough curves show that initial breakthrough and peak times were fairly similar for all dyes but that recoveries varied markedly from 9 to 57%. The breakthrough curves show a steep rise to a peak and long tail, typical of dual porosity aquifers. The breakthrough curves were simulated using a 1D dual porosity model. Model input parameters were constrained to acceptable ranges determined from estimations of matrix porosity and diffusion coefficient, fracture spacing, initial breakthrough times and bulk transmissivity of the aquifer. The model gave equivalent hydraulic apertures for fractures in the range 363-384 microm, dispersivities of 1 to 5 m and matrix block sizes of 6 to 9 cm. Modelling suggests that matrix block size is the primary controlling parameter for solute transport in the aquifer, particularly for recovery. The observed breakthrough curves suggest results from single injection-borehole tracer tests in the Chalk may give initial breakthrough and peak times reasonably representative of the aquifer but that recovery is highly variable and sensitive to injection and abstraction borehole location. Consideration of aquifer heterogeneity suggests that high recoveries may be indicative of a high flow pathway adjacent, but not necessarily connected, to the injection and abstraction boreholes whereas low recoveries may indicate more distributed flow through many fractures of similar aperture.

Controlling parameters of fluorescent tracer sorption on soils and sediments

NASA Astrophysics Data System (ADS)

Bork, Marcus; Graf-Rosenfellner, Markus; Lange, Jens; Lang, Friederike

2017-04-01

Fluorescent dyes like uranine (UR) and sulforhodamine B (SRB) have been widely used, especially for tracing hydrological processes. In the recent past, efforts have intensified to use fluorescent tracers also in soils, for example as proxies for organic pollutants. However, the sorption properties of both organic pollutants and fluorescent tracers have to be exactly known to succeed. Yet existing knowledge for soils is still incomplete and poorly standardized. For this reason, we carried out laboratory batch experiments to determine sorption isotherms of UR and SRB with varying pH, soil texture and organic carbon content (OC). As sorbents we used a sandy sediment with low OC, a silty loamy topsoil with 2.8 %-OC and a similar textured subsoil containing 0.6 %-OC. For both tracers six concentration steps each were prepared and shaken with the suspended sorbent for 42 h using a sorbent:solution ratio of 1:5. During the equilibration, the pH was repeatedly adjusted to 5.5, 6.5, and 7.5 by adding hydrochloric acid (HCl) or sodium hydroxide (NaOH). Subsequently, the tracer-sorbent-suspension was centrifuged and the fluorescence of the tracer in the supernatant was measured. In order to examine the influence of OC and the clay fraction on the tracer sorption, batch-experiments at pH 7.5 were also conducted with manipulated sorbents: top- and subsoil samples were treated with H2O2 to remove organic matter and the clay mineral montmorillonite was added to the sandy sediment to achieve final clay contents of 0.1 %, 0.5 %, 1 %, 2 %, 2.5 %, 5 % and 10 % clay. We observed a negative relationship between the linear sorption coefficient Kd and pH, which was stronger for UR than for SRB. Increasing numbers of negative sorption sites and functional groups of both tracers and sorbents with increasing pH might be the reason for this observation. Besides the pH-value, quantity and quality of clay and OC had a crucial influence on the sorption of UR and SRB in soils and sediment. As expected, increasing clay content, which is associated with an increasing specific surface and therefore more sorption sites, led to an increasing sorption of UR and SRB. Here, after the addition of 4 % of the clay mineral montmorillonite, nearly 100 % of both tracers were sorbed. Furthermore, OC influenced the sorption of UR and SRB in different ways: while the sorption of UR increased, the sorption of SRB decreased with increasing OC. In conclusion, the sorption behaviour of the fluorescent tracers UR and SRB in soils is very complex, and for appropriate application, the physico-chemical properties of the respective soils or sediments have to be considered. These conditions essentially determine if the respective tracer shows a conservative or non-conservative behaviour. With these aspects in mind, applying SRB and UR has the potential to be a cheap and fast method to estimate the fate of pollutants in soils or sediments.

Can nanotechnology help advance glaciological research?

NASA Astrophysics Data System (ADS)

Dahlke, H. E.; McNew, C.; Wang, C.; McLaughlin, S.; Kocis, T. N.

2017-12-01

In a rapidly changing cryosphere, identifying sources, pathways, and residence times of snow and glacier meltwater is critical to developing improved understanding of watershed-stream connections and hydrological/glaciological melt models. Traditionally, glaciologists have used a variety of tracers, including chloride, microparticles, and dyes, to identify the structure and morphology of subglacial drainage systems. However, minimum detection limits, tracer expense, and the ability of watersheds to retain a memory of past tracer inputs have restricted both the scale of tracer application and the repeated or simultaneous use of most known tracers, thus limiting our ability to study complex glacial systems. These shortcomings in hydrologic tracers can be overcome by utilizing a tracer that allows for the unique identification between spatial and temporal inputs while maintaining identical transport characteristics. Here, we present the use of DNA-labeled nanoparticles, developed for nano-medicine and drug delivery, as environmental tracers. The DNA-labeled particle tracers consist of short DNA strands encapsulated within biodegradable polymer microspheres, which allow for repeatable production of numerous uniquely labelled tracers of pre-determined size and physical transport properties. Each batch of tracers are independently quantifiable; even a single DNA molecule can be detected with cost-effective quantitative polymerase chain reaction (qPCR). We have tested our tracer technology in complex systems such as valley glaciers in Sweden and Alaska and in both laboratory and field studies of channel flow, overland flow, and flow in porous media; these proof-of-concept studies indicate that nanotechnology allows for powerful characterization, description, and, ultimately, prediction of flow pathways in glacial systems and the environment.

Sentinel lymph node mapping in gynecological oncology

PubMed Central

Du, Jiang; Li, Yaling; Wang, Qing; Batchu, Nasra; Zou, Junkai; Sun, Chao; Lv, Shulan; Song, Qing; Li, Qiling

2017-01-01

The intraoperative mapping of sentinel lymph nodes (SLNs) is part of the treatment strategy for a number of types of tumor. To retrospectively compare results from the mapping of pelvic SLNs for gynecological oncology, using distinct dyes, the present review was conducted to determine the clinical significance of SLN mapping for gynecological oncology. In addition, the present study aimed at identifying an improved choice for SLN mapping tracers in clinical application. Each dye exhibits demerits when applied in the clinical environment. The combination of radioisotopes and blue dyes was identified to exhibit the most accurate detection rate of SLN drainage of gynecological oncology. However, contrast agents were unable to identify whether a SLN is positive or negative for metastasis prior to pathologic examination; additional studies are required. PMID:29344213

The state of the art of conventional flow visualization techniques for wind tunnel testing

NASA Technical Reports Server (NTRS)

Settles, G. S.

1982-01-01

Conventional wind tunnel flow visualization techniques which consist of surface flow methods, tracers, and optical methods are presented. Different surface flow methods are outlined: (1) liquid films (oil and fluorescent dye and UV lighting, renewable film via porous dispenser in model, volatile carrier fluid, cryogenic colored oil dots, oil film interferometry); (2) reactive surface treatment (reactive gas injection, reversible dye); (3) transition and heat transfer detectors (evaporation, sublimation, liquid crystals, phase change paints, IR thermography); and (4) tufts (fluorescent mini tufts, cryogenic suitability). Other methods are smoke wire techniques, vapor screens, and optical methods.

Novel pH-Sensitive Lipid Based Exo-Endocytosis Tracers Reveal Fast Intermixing of Synaptic Vesicle Pools

PubMed Central

Kahms, Martin; Klingauf, Jürgen

2018-01-01

Styryl dyes and genetically encoded pH-sensitive fluorescent proteins like pHluorin are well-established tools for the optical analysis of synaptic vesicle (SV) recycling at presynaptic boutons. Here, we describe the development of a new class of fluorescent probes based on pH-sensitive organic dyes covalently bound to lipids, providing a promising complementary assay to genetically encoded fluorescent probes. These new optical tracers allow a pure read out of membrane turnover during synaptic activity and visualization of multiple rounds of stimulation-dependent SV recycling without genetic perturbation. Measuring the incorporation efficacy of different dye-labeled lipids into budding SVs, we did not observe an enrichment of lipids with affinity for liquid ordered membrane domains. But most importantly, we found no evidence for a static segregation of SVs into recycling and resting pools. A small but significant fraction of SVs that is reluctant to release during a first round of evoked activity can be exocytosed during a second bout of stimulation, showing fast intermixing of SV pools within seconds. Furthermore, we found that SVs recycling spontaneously have a higher chance to re-occupy release sites than SVs recycling during high-frequency evoked activity. In summary, our data provide strong evidence for a highly dynamic and use-dependent control of the fractions of releasable or resting SVs. PMID:29456492

Visualization of dyed NAPL concentration in transparent porous media using color space components.

PubMed

Kashuk, Sina; Mercurio, Sophia R; Iskander, Magued

2014-07-01

Finding a correlation between image pixel information and non-aqueous phase liquid (NAPL) saturation is an important issue in bench-scale geo-environmental model studies that employ optical imaging techniques. Another concern is determining the best dye color and its optimum concentration as a tracer for use in mapping NAPL zones. Most bench scale flow studies employ monochromatic gray-scale imaging to analyze the concentration of mostly red dyed NAPL tracers in porous media. However, the use of grayscale utilizes a third of the available information in color images, which typically contain three color-space components. In this study, eight color spaces consisting of 24 color-space components were calibrated against dye concentration for three color-dyes. Additionally, multiple color space components were combined to increase the correlation between color-space data and dyed NAPL concentration. This work is performed to support imaging of NAPL migration in transparent synthetic soils representing the macroscopic behavior of natural soils. The transparent soil used in this study consists of fused quartz and a matched refractive index mineral-oil solution that represents the natural aquifer. The objective is to determine the best color dye concentration and ideal color space components for rendering dyed sucrose-saturated fused quartz that represents contamination of the natural aquifer by a dense NAPL (DNAPL). Calibration was achieved for six NAPL zone lengths using 3456 images (24 color space components×3 dyes×48 NAPL combinations) of contaminants within a defined criteria expressed as peak signal to noise ratio. The effect of data filtering was also considered and a convolution average filter is recommended for image conditioning. The technology presented in this paper is fast, accurate, non-intrusive and inexpensive method for quantifying contamination zones using transparent soil models. Copyright © 2014 Elsevier B.V. All rights reserved.

Determination of time-of-travel, dispersion characteristics, and oxygen reaeration coefficients during low streamflows--Lower Tacony/Frankford Creek, Philadelphia, Pennsylvania

USGS Publications Warehouse

Senior, Lisa A.; Gyves, Matthew C.

2010-01-01

Time-of-travel, dispersion characteristics, and oxygen reaeration coefficients were determined by use of dye and gas tracing for a 2-mile reach of Tacony/Frankford Creek in Philadelphia, southeastern Pennsylvania. The reach frequently has concentrations of dissolved oxygen (DO) below the water-quality standard of 4 milligrams per liter during warm months. Several large combined sewer overflows (CSOs), including one of the largest in Philadelphia (former Wingohocking Creek), discharge to the study reach in this urbanized watershed, affecting water quality and the timing and magnitude of storm peaks. In addition, a dam that commonly results in backwater conditions and reduced natural reaeration is present a few hundred feet from the end of the study reach. Time-of-travel and reaeration data were collected under base-flow conditions in August and September 2009 for three sub-reaches from Roosevelt Boulevard (U.S. Route 1) to Castor Avenue. Determination of traveltimes to the centroid of the dye cloud were needed for calculation of the reaeration coefficients. Results of the dye study in Tacony/Frankford Creek indicate that traveltimes were affected by the presence of man-made structures, such as the large scour hole and pool developed at the outfall of the T14 CSO and the dam, both of which reduce stream velocities. Mean stream velocities during the dye-tracer tests ranged from a maximum of 0.44 to 0.04 foot per second through a large pool. The dispersion efficiency of the stream was determined from relations between normalized unit concentrations to time to peak for use in water-quality modeling. Oxygen reaeration coefficients determined by a constant rate-injection method using propane as the tracer gas were as low as 0.04 unit per hour in a long pool affected by backwater conditions behind a dam. The highest reaeration coefficient was 2.29 units per hour for a steep-gradient reach with multiple winding channels through gravel deposits, just downstream of a large scour pool developed at the outlet of the T14 CSO. Reaeration coefficients determined from the field tracer-gas method were compared to values calculated by two other methods, one that is based on theoretical equations using physical properties of the stream as variables and the other that is based on equations using the timing of measured daily maximum DO concentrations in the stream. Reaeration coefficients from the two alternate methods were most similar to values determined from the field tracer-gas method for the upstream portion of the study reach, characterized by free-flowing riffle and pools. Values of reaeration coefficients determined by the tracer-gas method were 2 to 10 times higher than values determined by 2 alternate methods for most subreaches hydraulically affected by man-made structures. In addition to the tracer gas, propane, the gas analysis also included methane, ethane, and ethene, of which only methane was measured in concentrations above a few micrograms per liter. Methane, thought to occur naturally or because of ongoing processes in the stream, was measured in concentrations ranging from 6.6 to 78 micrograms per liter; the concentrations were greatest in sub-reaches dominated by pools.

Fluid mechanics in fluids at rest.

PubMed

Brenner, Howard

2012-07-01

Using readily available experimental thermophoretic particle-velocity data it is shown, contrary to current teachings, that for the case of compressible flows independent dye- and particle-tracer velocity measurements of the local fluid velocity at a point in a flowing fluid do not generally result in the same fluid velocity measure. Rather, tracer-velocity equality holds only for incompressible flows. For compressible fluids, each type of tracer is shown to monitor a fundamentally different fluid velocity, with (i) a dye (or any other such molecular-tagging scheme) measuring the fluid's mass velocity v appearing in the continuity equation and (ii) a small, physicochemically and thermally inert, macroscopic (i.e., non-Brownian), solid particle measuring the fluid's volume velocity v(v). The term "compressibility" as used here includes not only pressure effects on density, but also temperature effects thereon. (For example, owing to a liquid's generally nonzero isobaric coefficient of thermal expansion, nonisothermal liquid flows are to be regarded as compressible despite the general perception of liquids as being incompressible.) Recognition of the fact that two independent fluid velocities, mass- and volume-based, are formally required to model continuum fluid behavior impacts on the foundations of contemporary (monovelocity) fluid mechanics. Included therein are the Navier-Stokes-Fourier equations, which are now seen to apply only to incompressible fluids (a fact well-known, empirically, to experimental gas kineticists). The findings of a difference in tracer velocities heralds the introduction into fluid mechanics of a general bipartite theory of fluid mechanics, bivelocity hydrodynamics [Brenner, Int. J. Eng. Sci. 54, 67 (2012)], differing from conventional hydrodynamics in situations entailing compressible flows and reducing to conventional hydrodynamics when the flow is incompressible, while being applicable to both liquids and gases.

Interactions among hydraulic conductivity distributions, subsurface topography, and transport thresholds revealed by a multitracer hillslope irrigation experiment

DOE PAGES

Jackson, C. Rhett; Du, Enhao; Klaus, Julian; ...

2016-08-12

Interactions among hydraulic conductivity distributions, subsurface topography, and lateral flow are poorly understood. We applied 407 mm of water and a suite of tracers over 51 h to a 12 by 16.5 m forested hillslope segment to determine interflow thresholds, preferential pathway pore velocities, large-scale conductivities, the time series of event water fractions, and the fate of dissolved nutrients. The 12% hillslope featured loamy sand A and E horizons overlying a sandy clay loam Bt at 1.25 m average depth. Interflow measured from two drains within an interception trench commenced after 131 and 208 mm of irrigation. Cumulative interflow equaledmore » 49% of applied water. Conservative tracer differences between the collection drains indicated differences in flow paths and storages within the plot. Event water fractions rose steadily throughout irrigation, peaking at 50% sixteen h after irrigation ceased. Data implied that tightly held water exchanged with event water throughout the experiment and a substantial portion of preevent water was released from the argillic layer. Surface-applied dye tracers bypassed the matrix, with peak concentrations measured shortly after flow commencement, indicating preferential network conductivities of 864–2240 mm/h, yet no macropore flow was observed. Near steady-state flow conditions indicated average conductivities of 460 mm/h and 2.5 mm/h for topsoils and the Bt horizon, respectively. Low ammonium and phosphorus concentrations in the interflow suggested rapid uptake or sorption, while higher nitrate concentrations suggested more conservative transport. Lastly, these results reveal how hydraulic conductivity variation and subsurface topographic complexity explain otherwise paradoxical solute and flow behaviors.« less

Use of Tracer Dye Techniques Is Assessing Ground Water Availabilty and Quality in a Karst Aquifer System (Project Overview)

EPA Science Inventory

Problem: The Leetown Science Center and ~ 500 acre research facility operated by the U.S. Geological Survey (USGS) Biological Resources Division (BRD) In West Virginia investigates the health and habitats of aquatic species. Large quantities of good quality cold water are needed ...

Salt tracer experiments in wetland ponds: will density stratification spoil the outcome?

NASA Astrophysics Data System (ADS)

Schmid, Bernhard H.; Hengl, Michael A.

2017-04-01

Wetland ponds are among the treatment options for peatland flows prior to their discharge into a receiving ambient water course or water body. The removal efficiency and effectiveness of wetland ponds (free water surface or FWS wetlands) is considered to be strongly related to the residence time or travel time distribution in the pond, with a narrow distribution (close to plug flow) being preferable to a wider one. This travel time distribution is, in turn, reflected by a breakthrough curve of an ideal tracer injected instantaneously into the flow (entering the wetland). As the term 'ideal tracer' suggests, such a substance, in real world cases, does not exist and can, at best, be approximated by a real tracer. Among the tracer groups in most widespread use, salt has the advantage of low cost, straightforward detection and analysis as well as low related environmental risk. In contrast, use of radioactive artificial tracers may meet with resistance from authorities and public, and fluorescent dyes are not necessarily devoid of problems, either (as recently discovered, there are two structural isomers of Rhodamin WT, the mixture of which may compromise the validity of breakthrough data analyses). From previous work by the authors it is known that density stratification may result from the injection of a salt tracer into a low Reynolds number free surface flow, which is a frequent characteristic of wetland ponds. As the formation of density layers in the course of a tracer experiment is highly undesirable, it may be useful to judge prior to beginning of the field work, if stratification is to be expected (and the experimental design should, consequently, be adapted suitably). The current work reported here employs an energy argument to extend existing criteria for density stratification in turbulent free surface flows. Vertical mixing is assumed to be sustained by a fraction of the frictional energy loss (expressed by Manning's law, but this can easily be adapted to other friction laws such as Darcy-Weisbach's). Experimental data obtained by the authors in the course of the PRIMROSE project (Contract no. EVK1-CT-2000-00065) were used to calibrate the criterion with respect to the actual percentage of the friction loss that fuels the vertical mixing. The distance x (m) needed for (full) vertical mixing of the salt tracer (NaCl or KBr) is finally derived as: C0 ṡ(0.802- 0.002ṡTw) ṡh R4h/3 x =----0.0694-ṡρw----ṡ(n-ṡu)2 (1) with C = -M0-- 0 Q ṡΔt0 (2) and M0 the tracer mass (g), Q the flow rate (m3/s), Δt0 the injection pulse duration (s), Rh (m) the hydraulic radius (= flow cross-sectional area divided by wetted perimeter), Tw the water temperature (˚ C), ρw water mass density (g/m3), Manning's n in SI-units (s/m1/3) and cross-sectionally averaged flow velocity u (m/s). Tracer concentration C0, as obtained from Eq.(2), is to be expressed in mg/l or g/m3 for use in Eq.(1).

Experimental quantification of solute transport through the vadose zone under dynamic boundary conditions with dye tracers and optical methods.

NASA Astrophysics Data System (ADS)

Cremer, Clemens; Neuweiler, Insa

2017-04-01

Knowledge of subsurface solute transport processes is vital to investigate e.g. groundwater contamination, nutrient uptake by plant roots and to implement remediation strategies. Beside field measurements and numerical simulations, physical laboratory experiments represent a way to establish process understanding and furthermore validate numerical schemes. Atmospheric forcings, such as erratically varying infiltration and evaporation cycles, subject the shallow subsurface to local and temporal variations in water content and associated hydraulic conductivity of the prevailing porous media. Those variations in material properties can cause flow paths to differ between upward and downward flow periods. Thereby, the unsaturated subsurface presents a highly complicated, dynamic system. Following an extensive systematical numerical investigation of flow and transport through bimodal, unsaturated porous media under dynamic boundary conditions (Cremer et al., 2016), we conduct physical laboratory experiments in a 22 cm x 8 cm x 1 cm flow cell where we introduce structural heterogeneity in the form sharp material interfaces between different porous media. In all experiments, a constant pressure head is implemented at the lower boundary, while cyclic infiltration-evaporation phases are applied at the soil surface. As a reference case a stationary infiltration with a rate corresponding to the cycle-averaged infiltration rate is applied. By initial application of dye tracers, solute transport within the domain is visualized such that transport paths and redistribution processes can be observed in a qualitative manner. Solute leaching is quantified at the bottom outlet, where breakthrough curves are obtained via spectroscopy. Liquid and vapor flow in and out of the domain is obtained from multiple balances. Thereby, the interplay of material structural heterogeneity and alternating flow (transport) directions and flow (transport) paths is investigated. Results show lateral transport through the material interface which differs between the stationary (unilateral) and dynamic cases (bilateral). This qualitative observation is confirmed by breakthrough curves for dynamic experiments which generally show the trend of faster initial breakthrough and increased tailing when compared to stationary infiltration results. Literature Cremer, C.J.M., I. Neuweiler, M. Bechtold, J. Vanderborght (2016): Solute Transport in Heterogeneous Soil with Time-Dependent Boundary Conditions, Vadose Zone Journal 15 (6) DOI: 10.2136/vzj2015.11.0144

Global Visualization in Water using AnodizedAluminum PressureSensitive Paint and Dissolved Oxygen as Tracer

NASA Astrophysics Data System (ADS)

Ozaki, Tatsuya; Ishikawa, Hitoshi; Sakaue, Hirotaka

2009-11-01

We have developed anodized-aluminum pressuresensitive paint (AA-PSP) for flow visualization in water using dissolved oxygen as a tracer. Developed AA-PSP is characterized using water calibration setup by controlling a dissolved oxygen concentration. It is shown that the developed AA-PSP gives 4.0 percent change in luminescence per 1 mg/l of oxygen concentration. This AA-PSP is applied to visualize flows in a water tunnel. Oxygen concentrations of the water tunnel and the dissolved oxygen are 9.5 mg/l and 20 mg/l, respectively. We can capture horseshoe vortices over the base of 10 mm cylinder by using this technique at Reynolds number of 1000 and a water speed of 100 mm/s, respectively. Unlike conventional tracers such as ink, milk, and fluorescent dyes, this visualization technique gives flow information on the AA-PSP coated surface without integrating flows between the AA-PSP and an optical detector. Because of using dissolved oxygen as a tracer, it holds the material properties of testing water except for the amount of oxygen. The tracer does not interfere with optical measurements and it does not contaminate the testing water. A conventional visualization technique using milk as a tracer is also employed for comparison.

Graphene Oxide Based Nanocarrier Combined with a pH-Sensitive Tracer: A Vehicle for Concurrent pH Sensing and pH-Responsive Oligonucleotide Delivery.

PubMed

Hsieh, Chia-Jung; Chen, Yu-Cheng; Hsieh, Pei-Ying; Liu, Shi-Rong; Wu, Shu-Pao; Hsieh, You-Zung; Hsu, Hsin-Yun

2015-06-03

We chemically tuned the oxidation status of graphene oxide (GO) and constructed a GO-based nanoplatform combined with a pH-sensitive fluorescence tracer that is designed for both pH sensing and pH-responsive drug delivery. A series of GOs oxidized to distinct degrees were examined to optimize the adsorption of the model drug, poly dT30. We determined that highly oxidized GO was a superior drug-carrier candidate in vitro when compared to GOs oxidized to lesser degrees. In the cell experiment, the synthesized pH-sensitive rhodamine dye was first applied to monitor cellular pH; under acidic conditions, protonated rhodamine fluoresces at 588 nm (λex=561 nm). When the dT30-GO nanocarrier was introduced into cells, a rhodamine-triggered competition reaction occurred, and this led to the release of the oligonucleotides and the quenching of rhodamine fluorescence by GO. Our results indicate high drug loading (FAM-dT30/GO=25/50 μg/mL) and rapid cellular uptake (<0.5 h) of the nanocarrier which can potentially be used for targeted RNAi delivery to the acidic milieu of tumors.

Direct experimental visualization of the global Hamiltonian progression of two-dimensional Lagrangian flow topologies from integrable to chaotic state

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baskan, O.; Clercx, H. J. H; Speetjens, M. F. M.

Countless theoretical/numerical studies on transport and mixing in two-dimensional (2D) unsteady flows lean on the assumption that Hamiltonian mechanisms govern the Lagrangian dynamics of passive tracers. However, experimental studies specifically investigating said mechanisms are rare. Moreover, they typically concern local behavior in specific states (usually far away from the integrable state) and generally expose this indirectly by dye visualization. Laboratory experiments explicitly addressing the global Hamiltonian progression of the Lagrangian flow topology entirely from integrable to chaotic state, i.e., the fundamental route to efficient transport by chaotic advection, appear non-existent. This motivates our study on experimental visualization of this progressionmore » by direct measurement of Poincaré sections of passive tracer particles in a representative 2D time-periodic flow. This admits (i) accurate replication of the experimental initial conditions, facilitating true one-to-one comparison of simulated and measured behavior, and (ii) direct experimental investigation of the ensuing Lagrangian dynamics. The analysis reveals a close agreement between computations and observations and thus experimentally validates the full global Hamiltonian progression at a great level of detail.« less

Retention time and flow patterns in Lake Marion, South Carolina, 1984

USGS Publications Warehouse

Patterson, G.G.; Harvey, R.M.

1995-01-01

In 1984, six dye tracer tests were made on Lake Marion to determine flow patterns and retention times under conditions of high and low flow. During the high-flow tests, with an average inflow of about 29,000 cubic feet per second, the approximate travel time through the lake for the peak tracer concentration was 14 days. The retention time was about 20 days. During the low-flow tests, with an average inflow of about 9,000 cubic feet per second, the approximate travel time was 41 days, and the retention time was about 60 days. The primary factors controlling movement of water in the lake are lake inflow and outflow. The tracer cloud moved consistently downstream, slowing as the lake widened. Flow patterns in most of the coves, and in some areas along the northeastern shore, are influenced more by tributary inflow than by factors attributable to water from the main body of the lake.

[Anaphylactic shock due to patent blue: four case report and review of literature].

PubMed

Lucas, N; Interne, S Benay; Laine, P; Nicolie, B; Fondrinier, E

2010-04-01

Description of four cases of anaphylactic shock with blue dye injection (bleu patenté V Guerbet 2.5%) during sentinel node biopsy for breast cancer. Women with breast carcinoma and combined approach with radioactive tracer and blue patent injection. Four cases were observed, which means an incidence of 0.57%. We report one case of grade II anaphylactic reaction and three cases of grade III requiring active reanimation and adrenaline perfusion. One patient developed a pulmonary embolism during the postoperative period, but no death was observed. We find an incidence of 1.06% of allergy but only 0.25% of anaphylactic shock (grade III). These rare but serious cases must weigh up the benefits and risks of using blue dye. We suggest using blue dye injection only in case of radioisotope detection failure. Of course, this approach must be evaluated. (c) 2009 Elsevier Masson SAS. All rights reserved.

Attempting to link hydro-morphology, transient storage and metabolism in streams: Insights from reactive tracer experiments

NASA Astrophysics Data System (ADS)

Kurz, Marie J.; Schmidt, Christian; Blaen, Phillip; Knapp, Julia L. A.; Drummond, Jennifer D.; Martí, Eugenia; Zarnetske, Jay P.; Ward, Adam S.; Krause, Stefan

2016-04-01

In-stream transient storage zones, including the hyporheic zone and vegetation beds, can be hotspots of biogeochemical processing in streams, enhancing ecosystem functions such as metabolism and nutrient uptake. The spatio-temporal dynamics and reactivity of these storage zones are influenced by multiple factors, including channel geomorphology, substrate composition and hydrology, and by anthropogenic modifications to flow regimes and nutrient loads. Tracer injections are a commonly employed method to evaluate solute transport and transient storage in streams; however, reactive tracers are needed to differentiate between metabolically active and inactive transient storage zones. The reactive stream tracer resazurin (Raz), a weakly fluorescent dye which irreversibly transforms to resorufin (Rru) under mildly reducing conditions, provides a proxy for aerobic respiration and an estimate of the metabolic activity associated with transient storage zones. Across a range of lotic ecosystems, we try to assess the influence of stream channel hydro-morphology, morphologic heterogeneity, and substrate type on reach (103 m) and sub-reach (102 m) scale transient storage, respiration, and nutrient uptake. To do so, we coupled injections of Raz and conservative tracers (uranine and/or salt) at each study site. The study sites included: vegetated mesocosms controlled for water depth; vegetated and un-vegetated sediment-filled mesocosms fed by waste-water effluent; a contrasting sand- vs. gravel-bedded lowland stream (Q = 0.08 m3/s); and a series of upland streams with varying size (Q = 0.1 - 1.5 m3/s) and prevalence of morphologic features. Continuous time-series of tracer concentrations were recorded using in-situ fluorometers and EC loggers. At the stream sites, time-series were recorded at multiple downstream locations in order to resolve sub-reach dynamics. Analyses yielded highly variable transport metrics and Raz-Rru transformation between study sites and between sub-reaches within stream sites. Higher Raz-Rru transformation rates were typically observed in smaller streams, in sub-reaches with higher prevalence of morphologic features known to promote hyporheic exchange, and in mesocosms with higher water depth, vegetation density and retention time. However, relationships between transformation rates and common metrics of transient storage were not consistent among study cases, indicating the existence of yet unrealized complexities in the relationships between water and solute transport and metabolism. Further insights were also gained related to the utility of Raz and improved tracer test practices.

Body water compartments during bed rest: Evaluation of analytical methods

NASA Technical Reports Server (NTRS)

Young, H. L.; Juhos, L.; Castle, B. L.; Yusken, J.; Greenleaf, J. E.

1973-01-01

Nine healthy young men were studied to determine the reproducibility and interchangeability of the use of radio-iodinated human serum albumin and Evans Blue dye for estimating plasma volume, sodium bromide for extracellular fluid volume, and deuterium oxide for total body water volume. All subjects were tested in a semibasal condition and allowed to rest for at least 30 min. after arriving at the laboratory. The results indicate that there was uniform distribution of I131 and Evans Blue dye 10 min. after injection and of NaBr and D2O 3 hours after oral ingestion; the buildup of residual tracer did not interfere appreciably with the measurement of either or Evans Blue spaces when they are administered at equal intervals, and the buildup of background tracer after ingestion of NaBr and D2O once per week for three consecutive weeks did not affect the accuracy of the measurement. It was found that I131 and Evans Blue may be used interchangeably for estimating plasma volume; for estimating bromide and D2O spaces, one 3-hour equilibrium blood sample gives results similar to the extrapolation of multiple samples.

Two-Photon Absorption Based Nanoscopic Velocimeter

NASA Astrophysics Data System (ADS)

Wang, Audrey; Abdalrahman, Akrm; Deng, Jianyu; Wang, Guiren

2017-11-01

Most velocimeters in micro/nanofluidics rely on particles as flow tracers, such as micro Particle Image Velocimetry (μPIV). However, for many microflows, such as electrokinetic and near wall flow, magnetophoresis, acoustophoresis, photophoresis and thermophoresis, particles have different velocity from their surrounding fluids. Although most molecular tracer based velocimeters can use neutral dye to measure average velocity, their temporal and spatial resolution are limited. Stimulated emission depletion (STED) based laser-induced fluorescence photobleaching anemometer (LIFPA), i.e. STED-LIFPA has achieved 70 nm spatial resolution. However, STED nanoscopy is very complicated for most users. Here we developed a two-photon absorption LIFPA (TP-LIFPA), which is relatively easier to operate. TP-LIFPA can take advantage of the two-photon microscopy to increase spatial resolution. We use a femtolaser to excite a dye. A microcapillary tube is used to test the feasibility of TP-LIFPA. TP-LIFPA can successfully measure the velocity profile in the capillary. The resolution of TP-LIFPA is estimated to be about 90 nm. The work indicates TP-LIFPA is a new promising nanoscopic velocimeter for interfacial flows, especially within 100 nm at the interfacial area between two phases in the future. The work was supported by NSF under Grant No. MRI CBET-1040227.

Hydrodynamic evaluation of a full-scale facultative pond by computational fluid dynamics (CFD) and field measurements.

PubMed

Passos, Ricardo Gomes; von Sperling, Marcos; Ribeiro, Thiago Bressani

2014-01-01

Knowledge of the hydraulic behaviour is very important in the characterization of a stabilization pond, since pond hydrodynamics plays a fundamental role in treatment efficiency. An advanced hydrodynamics characterization may be achieved by carrying out measurements with tracers, dyes and drogues or using mathematical simulation employing computational fluid dynamics (CFD). The current study involved experimental determinations and mathematical simulations of a full-scale facultative pond in Brazil. A 3D CFD model showed major flow lines, degree of dispersion, dead zones and short circuit regions in the pond. Drogue tracking, wind measurements and dye dispersion were also used in order to obtain information about the actual flow in the pond and as a means of assessing the performance of the CFD model. The drogue, designed and built as part of this research, and which included a geographical positioning system (GPS), presented very satisfactory results. The CFD modelling has proven to be very useful in the evaluation of the hydrodynamic conditions of the facultative pond. A virtual tracer test allowed an estimation of the real mean hydraulic retention time and mixing conditions in the pond. The computational model in CFD corresponded well to what was verified in the field.

Numerical modeling of simultaneous tracer release and piscicide treatment for invasive species control in the Chicago Sanitary and Ship Canal, Chicago, Illinois

USGS Publications Warehouse

Zhu, Zhenduo; Motta, Davide; Jackson, P. Ryan; Garcia, Marcelo H.

2017-01-01

In December 2009, during a piscicide treatment targeting the invasive Asian carp in the Chicago Sanitary and Ship Canal, Rhodamine WT dye was released to track and document the transport and dispersion of the piscicide. In this study, two modeling approaches are presented to reproduce the advection and dispersion of the dye tracer (and piscicide), a one-dimensional analytical solution and a three-dimensional numerical model. The two approaches were compared with field measurements of concentration and their applicability is discussed. Acoustic Doppler current profiler measurements were used to estimate the longitudinal dispersion coefficients at ten cross sections, which were taken as reference for calibrating the longitudinal dispersion coefficient in the one-dimensional analytical solution. While the analytical solution is fast, relatively simple, and can fairly accurately predict the core of the observed concentration time series at points downstream, it does not capture the tail of the breakthrough curves. These tails are well reproduced by the three-dimensional model, because it accounts for the effects of dead zones and a power plant which withdraws nearly 80 % of the water from the canal for cooling purposes before returning it back to the canal.

Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers

PubMed Central

Berclaz, Corinne; Pache, Christophe; Bouwens, Arno; Szlag, Daniel; Lopez, Antonio; Joosten, Lieke; Ekim, Selen; Brom, Maarten; Gotthardt, Martin; Grapin-Botton, Anne; Lasser, Theo

2015-01-01

The identification of a beta-cell tracer is a major quest in diabetes research. However, since MRI, PET and SPECT cannot resolve individual islets, optical techniques are required to assess the specificity of these tracers. We propose to combine Optical Coherence Microscopy (OCM) with fluorescence detection in a single optical platform to facilitate these initial screening steps from cell culture up to living rodents. OCM can image islets and vascularization without any labeling. Thereby, it alleviates the need of both genetically modified mice to detect islets and injection of external dye to reveal vascularization. We characterized Cy5.5-exendin-3, an agonist of glucagon-like peptide 1 receptor (GLP1R), for which other imaging modalities have been used and can serve as a reference. Cultured cells transfected with GLP1R and incubated with Cy5.5-exendin-3 show full tracer internalization. We determined that a dose of 1 μg of Cy5.5-exendin-3 is sufficient to optically detect in vivo the tracer in islets with a high specificity. In a next step, time-lapse OCM imaging was used to monitor the rapid and specific tracer accumulation in murine islets and its persistence over hours. This optical platform represents a versatile toolbox for selecting beta-cell specific markers for diabetes research and future clinical diagnosis. PMID:25988507

Clinical utility of the additional use of blue dye for indocyanine green for sentinel node biopsy in breast cancer.

PubMed

Ji, Yinan; Luo, Ningbin; Jiang, Yi; Li, Qiuyun; Wei, Wei; Yang, Huawei; Liu, Jianlun

2017-07-01

Indocyanine green (ICG) is widely used as a tracer in sentinel lymph node biopsy (SLNB) of patients with breast cancer. Whether SLNB performance can be improved by supplementing ICG with methylene blue dye remains controversial. This study compared the performance of SLNB when ICG was used alone or with blue dye. Consecutive patients with T1-3 primary breast cancer at our hospital were recruited into our study and randomized to undergo SLNB with ICG alone (n = 62) or with the combination of ICG and blue dye (n = 65). We compared the two methods in terms of identification rate, number and detection time of sentinel lymph nodes (SLNs) removed. SLN identification rate were similar in the absence (95.2%) or presence of blue dye (98.5%, P = 0.578) but significantly, more average nodes were removed when blue dye was used (3.8 ± 1.5 versus 2.7 ± 1.2, P = 0.000), and the average time for detecting each SLN was significantly shorter (3.91 ± 1.87 versus 5.65 ± 2.95 min; P = 0.000). No patient in the study experienced severe adverse reactions or complications. Recurrence of axillary node was detected in one patient (1.6%) using ICG alone but not in any patients using ICG and blue dye. The efficiency and sensitivity of SLNB can be improved by combining ICG with blue dye. Copyright © 2017 Elsevier Inc. All rights reserved.

A simple and inexpensive technique for assessing microbial contamination during drilling operations

NASA Astrophysics Data System (ADS)

Friese, André; Vuillemin, Aurèle; Kallmeyer, Jens; Wagner, Dirk

2016-04-01

Exploration of the Deep Biosphere relies on drilling, which inevitably causes infiltration of drilling fluids, containing allochthonous microbes from the surface, into the core. Therefore it is absolutely necessary to trace contamination of the sediment core in order to identify uncontaminated samples for microbiological investigations. Several techniques have been used in the past, including fluorescent dyes, perfluorocarbon tracers and fluorescent microspheres. Fluorescent dyes are inexpensive and easy to analyze on-site but are sensitive to light, pH and water chemistry. Furthermore, significant sorption to clays can decrease the fluorescence signal. Perfluorocarbon tracers are chemically inert hydrophobic compounds that can be detected with high sensitivity via gas chromatography, which might be a problem for on-site analysis. Samples have to be taken immediately after core retrieval as otherwise the volatile tracer will have diffused out of the core. Microsphere tracers are small (0.2 - 0.5 μm diameter) fluorescent plastic particles that are mixed into the drilling fluid. For analysis, these particles can be extracted from the sediment sample, transferred onto a filter and quantified via fluorescence microscopy. However, they are very expensive and therefore unsuitable for deep drilling operations that need large amounts of drilling fluids. Here, we present an inexpensive contamination control approach using fluorescent pigments initially used for coloring plastics. The price of this tracer is nearly three orders of magnitude lower than conventional microsphere tracers. Its suitability for large drilling campaigns was tested at the ICDP Deep Drilling at Lake Towuti, Sulawesi, Indonesia. The tracer was diluted 1:1000 in lake water, which was used as the drilling fluid. Additionally, a plastic bag filled with 20 mL of undiluted tracer was attached to the core catcher to increase the amount of particles in the liner fluid right at the core. After core retrieval, the core was cut and the liner fluid collected. From each whole round core (WRC) that was taken for microbiological and biogeochemical analyses, small samples of 1 cc were retrieved with sterile cutoff syringes from the rim, the center and an intermediate position. After dilution and homogenization in 9 mL MilliQ water, 10 μL of the sediment slurry was transferred onto a filter membrane and particles counted via fluorescence microscopy. Additionally, particles in the liner fluid were also quantified. This allows the quantification of the amount of drilling fluid that has entered the sediment sample during drilling. The minimum detectable volume of drilling fluid was in the order of single nanoliters per cc of sediment, which is in the range of established techniques. The presented method requires only a minimum of equipment and allows rapid determination of contamination in the sediment core and an easy to handle on-site analysis at low costs. The sensitivity is in the same range as perfluorocarbon and microsphere tracer applications. Thus, it offers an inexpensive but powerful technique for contamination assessment for future drilling campaigns.

Feasibility and diagnostic performance of dual-tracer-guided sentinel lymph node biopsy in cT1-2N0M0 gastric cancer: a systematic review and meta-analysis of diagnostic studies.

PubMed

Huang, Ling; Wei, Tao; Chen, Junjun; Zhou, Donghui

2017-05-16

Dual-tracer-guided sentinel lymph node (SLN) biopsy may provide a promising diagnostic tool to assess accurately the status of lymph node metastasis in the surgical operation and assure the oncologic safety of the function or stomach preserving surgery. The diagnostic performance of this technology in recent studies varied. Thus, we conducted this meta-analysis. This systematic review and meta-analysis was registered at the PROSPERO. Eligible studies were searched in the PubMed, EMBASE, Web of Knowledge, and Cochrane Library databases. A random-effect model was used to pool the data. Summary receiver operator characteristic curves, analysis for publication bias, meta-regression, and subgroup analysis were also performed. The pooled SLN identification rate and sensitivity were 0.97 and 0.89. 99m Tc-human serum albumin with indocyanine green (ICG), 99m Tc-antimony sulfur colloid with ICG, performing SLN biopsy ≥15 min after dye injection, an SLN ≥5, the basin dissection, laparoscopic surgery, in studies conducted in Japan and studies published after 2012, were associated with higher sensitivity. CT1 stage, performing SLN biopsy ≥15 min after dye injection, in studies conducted in Japan and studies published after 2012, were related with a higher identification rate. Dual tracer is promising in SLN biopsy in gastric cancer, and the clinical application of SLN biopsy should be limited to the patients of cT1N0M0 gastric cancer. The combination of 99m Tc-human serum albumin and ICG as well as the combination of 99m Tc-antimony sulfur colloid and ICG may be the optimal tracer combination. However, it seems not justified to put this technique into routine clinical application recently. Some factors that might enhance diagnostic value are identified.

Do ray cells provide a pathway for radial water movement in the stems of conifer trees?

PubMed

Barnard, David M; Lachenbruch, Barbara; McCulloh, Katherine A; Kitin, Peter; Meinzer, Frederick C

2013-02-01

The pathway of radial water movement in tree stems presents an unknown with respect to whole-tree hydraulics. Radial profiles have shown substantial axial sap flow in deeper layers of sapwood (that may lack direct connection to transpiring leaves), which suggests the existence of a radial pathway for water movement. Rays in tree stems include ray tracheids and/or ray parenchyma cells and may offer such a pathway for radial water transport. This study investigated relationships between radial hydraulic conductivity (k(s-rad)) and ray anatomical and stem morphological characteristics in the stems of three conifer species whose distributions span a natural aridity gradient across the Cascade Mountain range in Oregon, United States. The k(s-rad) was measured with a high-pressure flow meter. Ray tracheid and ray parenchyma characteristics and water transport properties were visualized using autofluorescence or confocal microscopy. The k(s-rad) did not vary predictably with sapwood depth among species and populations. Dye tracer did not infiltrate ray tracheids, and infiltration into ray parenchyma was limited. Regression analyses revealed inconsistent relationships between k(s-rad) and selected anatomical or growth characteristics when ecotypes were analyzed individually and weak relationships between k(s-rad) and these characteristics when data were pooled by tree species. The lack of significant relationships between k(s-rad) and the ray and stem morphologies we studied, combined with the absence of dye tracer in ray tracheid and limited movement of dye into ray parenchyma suggests that rays may not facilitate radial water transport in the three conifer species studied.

Multitracing Experiment With Solved and Particulate Tracers In An Unsaturated Field Soil

NASA Astrophysics Data System (ADS)

Burkhardt, M.; Kasteel, R.; Vereecken, H.

Solute movement and colloid migration follow preferential flow paths in structured soils at the field scale. The use of microsphreres is a possible option to mimic colloid transport through the vadose zone into the groundwater. We present results of multi- tracing experiments conducted in an Orthic Luvisol using bromide (Br-), the reactive dye tracer Brilliant Blue (BB) and microspheres. The fluorescent microspheres (1 and 10 µm in diameter) were functionalized with a negative surface charge. Eight field plots (about 2 m2) were irrigated with 10 mm and 40 mm during 6 h. Four field plots were sampled directly after the irrgation, the others were exposed for 90 days to natural wheather conditions. Photographs of horizontal cross-sections and disturbed soil sam- ples were taken every 5 to 10 cm down to a depth of 160 cm. Image analysis was used to derive concentration distributions of BB using a calibration relationship between concentration and color spectra. The microspheres were quantified after desorption of the soil samples by fluorescent microscopy and image analysis. We used moment analysis to characterize transport phenomena. We found that transport through the soil matrix was affected by sorption, but all of the applied compounds were transported through preferential flow paths (earthworm burrows) down to a depth of 160 cm irre- spective of their chemical properties. Furthermore, this study shows that microspheres can be used to mimic colloid facilitated transport under unsaturated conditions in a field soil.

Copper ion as a new leakage tracer.

PubMed

Modaresi, J; Baharizade, M; Shareghi, A; Ahmadi, M; Daneshkazemi, A

2013-12-01

Most failures of root canal treatments are caused by bacteria. Studies showed that the most common cause of endodontic failures were the incomplete obturation of the root canal and the lack of adequate apical seal. Some in-vitro methods are used to estimate sealing quality, generally by measuring microleakage that allows the tracer agent to penetrate the filled canal. Conventional methods of evaluating the seal of endodontically treated teeth are complicated and have some drawbacks. We used copper ion diffusion method to assess the leakage and the results were compared to dye penetration method. The crowns of 21 extracted teeth were cut off at the CEJ level. After preparing the canals, the teeth were placed in tubes containing saline. They were divided randomly into 15 experimental cases; 3 positive and 3 negative controls. Positive controls were filled by single cone without sealer while the experimental and the negative control groups were filled by lateral technique. The coronal portion of gutta was removed and 9mm was left. The external surface of each tooth was coated with nail polish. Two millimeters of apical portion was immersed into 9ml of distilled water and 0.3ml of CuSO4 solution was injected into the coronal portion. After 2 days, copper sulfate was measured by an atomic absorption spectrophotometer. The teeth were then immersed in 2% methylene blue for 24 hours, sectioned and the extent of dye penetration was measured by a stereomicroscope. The maximum and minimum recorded copper ion concentrations for the experimental group were 18.37 and 2.87ppm respectively. The maximum and minimum recorded dye penetrations for the experimental group were 8.5 and 3.5mm respectively. The statistical analysis, adopting paired samples test, showed poor correlation between average recorded results of two methods. Based on our results, there was no significant correlation between the dye penetration and the copper ion diffusion methods.

Measurements Of Coronary Mean Transit Time And Myocardial Tissue Blood Flow By Deconvolution Of Intravasal Tracer Dilution Curves

NASA Astrophysics Data System (ADS)

Korb, H.; Hoeft, A.; Hellige, G.

1984-10-01

Previous studies have shown that intramyocardial blood volume does not vary to a major extent even during extreme variation of hemodynamics and coronary vascular tone. Based on a constant intramyocardial blood volume it is therefore possible to calculate tissue blood flow from the mean transit time of an intravascular tracer. The purpose of this study was to develop a clinically applicable method for measurement of coronary blood flow. The new method was based on indocyanine green, a dye which is bound to albumin and intravasally detectable by means of a fiberoptic catheter device. One fiberoptic catheter was placed in the aortic root and another in the coronary sinus. After central venous dye injection the resulting arterial and coronary venous dye dilution curves were processed on-line by a micro-computer. The mean transit time as well as myocardial blood flow were calculated from the step response function of the deconvoluted arterial and coronary venous signals. Reference flow was determined with an extracorporeal electromagnetic flowprobe within a coronary sinus bypass system. 38 steady states with coronary blood flow ranging from 49 - 333 ml/min*100g were analysed in 5 dogs. Mean transit times varied from 2.9 to 16.6 sec. An average intracoronary blood volume of 13.9 -7 1.8 m1/100g was calculated. The correlation between flow determined by the dye dilution technique and flow measured with the reference method was 0.98. According to these results determination of coronary blood flow with a double fiberoptic system and indocyanine green should be possible even under clinical conditions. Furthermore, the arterial and coronary venous oxygen saturation can be monitored continuously by the fiberoptic catheters. Therefore, additional information about the performance of the heart such as myocardial oxygen consumption and myocardial efficiency is available with the same equipment.

In vivo photoacoustic and ultrasonic mapping of rat sentinel lymph nodes with a modified commercial ultrasound imaging system

NASA Astrophysics Data System (ADS)

Erpelding, Todd N.; Kim, Chulhong; Pramanik, Manojit; Guo, Zijian; Dean, John; Jankovic, Ladislav; Maslov, Konstantin; Wang, Lihong V.

2010-02-01

Sentinel lymph node biopsy (SLNB) has become the standard method for axillary staging in breast cancer patients, relying on invasive identification of sentinel lymph nodes (SLNs) following injection of blue dye and radioactive tracers. While SLNB achieves a low false negative rate (5-10%), it is an invasive procedure requiring ionizing radiation. As an alternative to SLNB, ultrasound-guided fine needle aspiration biopsy has been tested clinically. However, ultrasound alone is unable to accurately identify which lymph nodes are sentinel. Therefore, a non-ionizing and noninvasive detection method for accurate SLN mapping is needed. In this study, we successfully imaged methylene blue dye accumulation in vivo in rat axillary lymph nodes using a Phillips iU22 ultrasound imaging system adapted for photoacoustic imaging with an Nd:YAG pumped, tunable dye laser. Photoacoustic images of rat SLNs clearly identify methylene blue dye accumulation within minutes following intradermal dye injection and co-registered photoacoustic/ultrasound images illustrate lymph node position relative to surrounding anatomy. To investigate clinical translation, the imaging depth was extended up to 2.5 cm by adding chicken breast tissue on top of the rat skin surface. These results raise confidence that photoacoustic imaging can be used clinically for accurate, noninvasive SLN mapping.

An evaluation of the hydrologic relevance of lateral flow in snow at hillslope and catchment scales

Treesearch

David Eiriksson; Michael Whitson; Charles H. Luce; Hans Peter Marshall; John Bradford; Shawn G. Benner; Thomas Black; Hank Hetrick; James P. McNamara

2013-01-01

Lateral downslope flow in snow during snowmelt and rain-on-snow (ROS) events is a well-known phenomenon, yet its relevance to water redistribution at hillslope and catchment scales is not well understood. We used dye tracers, geophysical methods, and hydrometric measurements to describe the snow properties that promote lateral flow, assess the relative velocities of...

Flight Testing of the Forward Osmosis Bag for Water Recovery on STS-135

NASA Technical Reports Server (NTRS)

Roberts, Michael S.; Soler, Monica; Mortenson, Todd; McCoy, LaShelle; Woodward, Spencer; Levine, Howard G.

2011-01-01

The Forward Osmosis Bag (FOB) is a personal water purification device for recovery of potable liquid from almost any non-potable water source. The FOB experiment was flown as a sortie mission on STS-135/ULF7 using flight-certified materials and a design based on the X-Pack(TradeMark) from Hydration Technology Innovations (Albany, OR). The primary objective was to validate the technology for use under microgravity conditions. The FOB utilizes a difference in solute concentration across a selectively permeable membrane to draw water molecules from the non-potable water while rejecting most chemical and all microbial contaminants contained within. Six FOB devices were tested on STS-135 for their ability to produce a potable liquid permeate from a feed solution containing 500 mL potassium chloride (15 g/L) amended with 0.1% methyl blue dye (w:v) tracer against an osmotic gradient created by addition of 60 mL of concentrate containing the osmolytes fructose and glucose, and 0.01% sodium fluorescein (w:v) tracer. Three FOB devices were physically mixed by hand for 2 minutes by a crewmember after loading to augment membrane wetting for comparison with three unmixed FOB devices. Hydraulic flux rate and rejection of salt and dye in microgravity were determined from a 60-mL sample collected by the crew on orbit after 6 hours. Post-flight analysis of samples collected on orbit demonstrated that the Forward Osmosis Bag achieved expected design specifications in microgravity. The hydraulic flux rate of water across the membrane was reduced approximately 50% in microgravity relative to ground controls that generated an average of 50 mL per hour using the same water and osmolyte solutions. The membrane rejected both potassium and chloride at >92% and methyl blue dye at >99.9%. Physical mixing of the FOB during water recovery did not have any significant effect on either flux rate or rejection of solutes from the water solution. The absence of buoyancy-driven convection in microgravity suggests that mass transport was dominated by diffusion, slowing the rate of permeate production across the membrane. It is possible that a predicted reduction in concentration polarization at the membrane surface that may have acted to increase the rate of permeate production in microgravity was negligible under the described test conditions.

Hydrogeology of the Markagunt Plateau, Southwestern Utah

USGS Publications Warehouse

Spangler, Lawrence E.

2010-01-01

The Markagunt Plateau, in southwestern Utah, lies at an altitude of about 9,500 feet and is capped primarily by Quaternary-age basalt that overlies Eocene-age freshwater limestone of the Claron Formation. Over large parts of the Markagunt Plateau, dissolution of the Claron limestone and subsequent collapse of the overlying basalt have produced a terrain characterized by sinkholes as much as 1,000 feet across and 100 feet deep. Numerous large springs discharge from the basalt and underlying limestone on the plateau, including Mammoth Spring, one of the largest springs in Utah, with a discharge that can exceed 300 cubic feet per second. Discharge from Mammoth Spring is from the Claron Formation; however, recharge to the spring largely takes place by both focused and diffuse infiltration through the basalt that caps the limestone. Results of dye tracing to Mammoth Spring indicate that recharge originates largely southwest of the spring outside of the Mammoth Creek watershed, as well as from losing reaches along Mammoth Creek. Maximum groundwater travel time to the spring from dye-tracer tests during the snowmelt runoff period was about 1 week. Specific conductance and water temperature data from the spring show an inverse relation to discharge during snowmelt runoff and rainfall events, also indicating short groundwater residence times. Results of major-ion analyses for samples collected from Mammoth and other springs on the plateau indicate calcium-bicarbonate type water containing low (less than 200 mg/L) dissolved-solids concentrations. Investigations in the Navajo Lake area along the southern margin of the plateau have shown that water losing to sinkholes bifurcates and discharges to both Cascade and Duck Creek Springs, which subsequently flow into the Virgin and Sevier River basins, respectively. Groundwater travel times to these springs, on the basis of dye tracing, were about 8.5 and 53 hours, respectively. Similarly, groundwater travel time from Duck Creek Sinks to Lower Asay Spring was about 68 hours. Dye-tracer studies conducted at the Mammoth Creek fish hatchery along the eastern margin of the Markagunt Plateau indicate that water losing through the channel of Mammoth Creek 3,000 feet upstream of the hatchery discharges from the hatchery springs in about 7.5 hours. Results of studies using soil bacteria and club moss spores as surrogate particle tracers for the whirling disease parasite also indicate that the potential exists for transport of the parasite to the springs from Mammoth Creek.

A Simple and Inexpensive Technique for Assessing Microbial Contamination during Drilling Operations

NASA Astrophysics Data System (ADS)

Friese, A.; Kallmeyer, J.; Wagner, D.; Kitte, J. A.

2016-12-01

Exploration of the Deep Biosphere relies on drilling, which inevitably causes infiltration of drilling fluids, containing non-indigenous microbes from the surface, into the core. Therefore it is absolutely necessary to trace contamination of the sediment core in order to identify uncontaminated samples for microbiological investigations in drill core samples. To do this, usually a tracer is mixed into the drilling fluid. In past drilling operations a variety of tracers have been used including dyes, salts, dissolved gasses, and microspheres. The latter are microbe-sized fluorescent particles that can be detected with very high sensitivity. Each tracer has its specific strengths and weaknesses, for microspheres the main problem was the high price, which limited the use to spot checks or drilling operations that require only small amounts of drilling fluid. Here, we present a modified microsphere tracer approach, using an aqueous fluorescent pigment dispersion that has a similar concentration of fluorescent particles as previously used microsphere tracers. However, compared to previous microsphere tracers, the cost of the new tracer is four orders of magnitude lower, allowing for a much more liberal use even in large-scale operations. Its suitability for large drilling campaigns was successfully tested at the ICDP Deep Drilling at Lake Towuti, Sulawesi, Indonesia and at the ICDP Deep Drilling at Lake Chalco, Mexico. Contamination can be detected by fluorescence microscopy or by flow cytometry at a sensitivity that is in the range of established techniques. Quantification of the tracer thus only requires a minimum of equipment and by using a small portable cytometer, high-resolution data can be obtained directly on-site within minutes and with minimal effort. Therefore this approach offers an inexpensive but powerful alternative technique for contamination assessment for future drilling campaigns.

[The clinical value of sentinel lymph node detection in laryngeal and hypopharyngeal carcinoma patients with clinically negative neck by methylene blue method and radiolabeled tracer method].

PubMed

Zhao, Xin; Xiao, Dajiang; Ni, Jianming; Zhu, Guochen; Yuan, Yuan; Xu, Ting; Zhang, Yongsheng

2014-11-01

To investigate the clinical value of sentinel lymph node (SLN) detection in laryngeal and hypopharyngeal carcinoma patients with clinically negative neck (cN0) by methylene blue method, radiolabeled tracer method and combination of these two methods. Thirty-three patients with cN0 laryngeal carcinoma and six patients with cN0 hypopharyngeal carcinoma underwent SLN detection using both of methylene blue and radiolabeled tracer method. All these patients were accepted received the injection of radioactive isotope 99 Tc(m)-sulfur colloid (SC) and methylene blue into the carcinoma before surgery, then all these patients underwent intraopertive lymphatic mapping with a handheld gamma-detecting probe and blue-dyed SLN. After the mapping of SLN, selected neck dissections and tumor resections were peformed. The results of SLN detection by radiolabeled tracer, dye and combination of both methods were compared. The detection rate of SLN by radiolabeled tracer, methylene blue and combined method were 89.7%, 79.5%, 92.3% respectively. The number of detected SLN was significantly different between radiolabeled tracer method and combined method, and also between methylene blue method and combined method. The detection rate of methylene blue and radiolabeled tracer method were significantly different from combined method (P < 0.05). Nine patients were found to have lymph node metastasis by final pathological examination. The accuracy and negative rate of SLN detection of the combined method were 97.2% and 11.1%. The combined method using radiolabeled tracer and methylene blue can improve the detection rate and accuracy of sentinel lymph node detection. Furthermore, sentinel lymph node detection can accurately represent the cervical lymph node status in cN0 laryngeal and hypopharyngeal carcinoma.

Applying a uniform layer of disinfectant by wiping.

PubMed

Cooper, D W

2000-01-01

Disinfection or sterilization often requires applying a film of liquid to a surface, frequently done by using a wiper as the applicator. The wiper must not only hold a convenient amount of liquid, it must deposit it readily and uniformly. Contact time is critical to disinfection efficacy. Evaporation can limit the contact time. To lengthen the contact time, thickly applied layers are generally preferred. The thickness of such layers can be determined by using dyes or other tracers, as long as the tracers do not significantly affect the liquid's surface tension and viscosity and thus do not affect the thickness of the applied layer. Alternatively, as done here, the thickness of the layer can be inferred from the weight loss of the wiper. Results are reported of experiments on thickness of the layers applied under various conditions. Near saturation, hydrophilic polyurethane foam wipers gave layers roughly 10 microns thick, somewhat less than expected from hydrodynamic theory, but more than knitted polyester or woven cotton. Wipers with large liquid holding capacity, refilled often, should produce more nearly uniform layers. Higher pressures increase saturation in the wiper, tending to thicken the layer, but higher pressures also force liquid from the interface, tending to thin the layer, so the net result could be thicker or thinner layers, and there is likely to be an optimal pressure.

On the use of rhodamine WT for the characterization of stream hydrodynamics and transient storage

USGS Publications Warehouse

Runkel, Robert L.

2015-01-01

Recent advances in fluorometry have led to increased use of rhodamine WT as a tracer in streams and rivers. In light of this increased use, a review of the dye's behavior in freshwater systems is presented. Studies in the groundwater literature indicate that rhodamine WT is transported nonconservatively, with sorption removing substantial amounts of tracer mass. Column studies document a two-step breakthrough curve in which two structural isomers are chromatographically separated. Although the potential for nonconservative transport is acknowledged in the surface water literature, many studies assume that sorptive losses will not affect the characterization of physical transport processes. A literature review and modeling analysis indicates that this assumption is valid for quantification of physical properties that are based on the bulk of the tracer mass (traveltime), and invalid for the characterization of processes represented by the tracer tail (transient storage attributable to hyporheic exchange). Rhodamine WT should be considered nonconservative in the hyporheic zone due to nonconservative behavior demonstrated for similar conditions in groundwater. As such, rhodamine WT should not be used as a quantitative tracer in hyporheic zone investigations, including the study of long flow paths and the development of models describing hyporheic zone processes. Rhodamine WT may be used to qualitatively characterize storage in large systems, where there are few practical alternatives. Qualitative investigations should rely on early portions of the tracer profile, making use of the temporal resolution afforded by in situ fluorometry, while discarding later parts of the tracer profile that are adversely affected by sorption.

Experiments to Evaluate and Implement Passive Tracer Gas Methods to Measure Ventilation Rates in Homes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lunden, Melissa; Faulkner, David; Heredia, Elizabeth

2012-10-01

This report documents experiments performed in three homes to assess the methodology used to determine air exchange rates using passive tracer techniques. The experiments used four different tracer gases emitted simultaneously but implemented with different spatial coverage in the home. Two different tracer gas sampling methods were used. The results characterize the factors of the execution and analysis of the passive tracer technique that affect the uncertainty in the calculated air exchange rates. These factors include uncertainties in tracer gas emission rates, differences in measured concentrations for different tracer gases, temporal and spatial variability of the concentrations, the comparison betweenmore » different gas sampling methods, and the effect of different ventilation conditions.« less

Small swimmers and sinkers structure the microenvironment by deforming ambient chemical gradients

NASA Astrophysics Data System (ADS)

Inman, B.; Franks, P. J. S.; Torres, C.

2016-02-01

Chemical gradients in the microscale environment determine the rates of fundamental planktonic processes such as signaling and sensing, grazing, predation, mating, infection, nutrient uptake, and primary production. We show that bodies swimming or sinking at low Reynolds number can deform and intensify ambient scalar gradients on the order of 10-1000 times. Over time, this restructuring of the microenvironment in the wake of a moving particle results in elevated diffusive fluxes of ecologically relevant tracers. We use diffusive Stokes flow to model the time evolution of planes of tracer particles that represent a gradient being deformed by a sinking sphere. Ultimately, the degree of gradient intensification and the corresponding diffusive flux enhancement depend on how far a moving body deforms a plane of tracer before it punches through. We derive a scaling for this distance, Ldef, as a function of the Péclet number and describe its importance in the microscale planktonic environment. We then test the modeled gradient deformation, diffusive flux enhancement, and Ldef using an experimental tank apparatus in which the marine copepod, Calanus pacificus, is induced to swim through a layer of tracer dye. We show that the gradient deformation due to the copepod swimming can enhance the apparent tracer diffusivity by 500% over 10 minutes, drawing the tracer out into centimeters-long tendrils. These swimming-induced gradient deformations may be an important source of structure in the microscale environment of the plankton.

Use of ground-water tracers to evaluate the hydraulic connection between Key Cave and the proposed industrial site near Florence, Alabama, 2000 and 2001

USGS Publications Warehouse

Kidd, Robert E.; Taylor, Charles J.; Stricklin, Victor E.

2001-01-01

In an effort to attract new industries and jobs, the city of Florence, Alabama has proposed development of an industrial park southwest of the city. Carbonate rock under-lines the area and sinkholes, springs, caves, and sinking streams are common. Key Cave, located about 5 miles southwest of the proposed park, is the only know habitat for the Alabama Cavefish (Speoplatyrhinus poulsoni). The Alabama Cavefish is a Federally designated Endangered Species, and Key Cave has been designated as Critical Habitat. The U.S. Geological Survey was requested by the city of Florence and the U.S. Fish and Wildlife Service to assist in determining if a hydraulic connection exists between the proposed industrial park and Key Cave. Dye tracing methods were used in the investigation to determine if a hydraulic connection exists. Dye tracing is a technique that involves labeling a discrete quantity of ground water with a fluorescent dye so that its flow in the subsurface can be tracked to a ground-water discharge point. Monitoring for dyes involved the use of passive dye detectors placed in springs, wells, caves and surface streams. During the passage of ground water containing fluorescent dye, the dye is absorbed and concentrated on the detectors. Spectrofluorometric analyses of the detectors determines the presence or absence of dye. Dye injected in well I-1 on January 10, 2001, was recovered from site 67, Cypress Creek at General John Coffee Highway (State Highway 20) on January 17, 2001. No dye was recovered from site 68, Cypress Creek at Waterloo Road (County Road 14), indicating an east-southeast flow path from well I-1 to Cypress Creek. No positive dye recovery was made from dye injected in well I-2 on January 10, 2001. Water samples collected from the well February 1 and 15, 2001, showed little movement into the ground-water system. Dye injected in well I-3 on January 10, 2001, was recovered at two sites in Key Cave and at other locations. This test indicates a hydraulic connection exists between Key Cave and the proposed industrial site.

The field campaigns of the European Tracer Experiment (ETEX). overview and results

NASA Astrophysics Data System (ADS)

Nodop, K.; Connolly, R.; Girardi, F.

As part of the European Tracer Experiment (ETEX) two successful atmospheric experiments were carried out in October and November, 1994. Perfluorocarbon (PFC) tracers were released into the atmosphere in Monterfil, Brittany, and air samples were taken at 168 stations in 17 European countries for 72 h after the release. Upper air tracer measurements were made from three aircraft. During the first experiment a westerly air flow transported the tracer plume north-eastwards across Europe. During the second release the flow was eastwards. The results from the ground sampling network allowed the determination of the cloud evolution as far as Sweden, Poland and Bulgaria. This demonstrated that the PFT technique can be successfully applied in long-range tracer experiments up to 2000 km. Typical background concentrations of the tracer used are around 5-7 fl ℓ -1 in ambient air. Concentrations in the plume ranged from 10 to above 200 fl/ℓ -1. The tracer release characteristics, the tracer concentrations at the ground and in upper air, the routine and additional meteorological observations at the ground level and in upper air, trajectories derived from constant-level balloons and the meteorological input fields for long-range transport models are assembled in the ETEX database. The ETEX database is accessible via the Internet. Here, an overview is given of the design of the experiment, the methods used and the data obtained.

The effect of wind and currents on gas exchange in an estuarine system

NASA Technical Reports Server (NTRS)

Broecker, W. S.; Ledwell, J. R.; Bopp, R.

1987-01-01

The objectives were to develop a non-volatile tracer to use in gas exchange experiments in laterally unconfined systems and to study applications of deliberate tracers in limnology and oceanography. Progress was made on both fronts but work on the development of the non-volatile tracer proved to be more difficult and labor intensive that anticipated so no field experiments using non-volatile tracers was performed as yet. In the search for a suitable non-volatile tracer for an ocean scale gas exchange experiment a tracer was discovered which does not have the required sensitivity for a large scale experiment, but is very easy to analyze and will be well suited for smaller experiments such as gas exchange determinations on rivers and streams. Sulfur hexafluoride, SF6, was used successfully as a volatile tracer along with tritium as a non-volatile tracer to study gas exchange rates from a primary stream. This is the first gas exchange experiment in which gas exchange rates were determined on a head water stream where significant groundwater input occurs along the reach. In conjunction with SF6, Radon-222 measurements were performed on the groundwater and in the stream. The feasibility of using a combination of SF6 and radon is being studied to determine groundwater inputs and gas exchange of rates in streams with significant groundwater input without using a non-volatile tracer.

Feedback-mediated cancer therapy: a FRET-based nanoreporter approach

NASA Astrophysics Data System (ADS)

Sarkar, Suproteem K.; Khater, Yashika; Kulkarni, Ashish; Sengupta, Shiladitya

2014-08-01

A theranostic nanoparticle system was developed by integrating a chemotherapeutic agent with an "activatable" fluorescent tracer. The system signals tumor death by monitoring the activity of caspase-3, a product of apoptosis, and can therefore screen the treatment sensitivity of a particular tumor. The polymer nanoparticles (Poly [isobutylene-alt-maleic anhydride]) were formed through reprecipitation and contained paclitaxel, a chemotherapy drug, and fluorescein isothiocyanate, a fluorescent dye. The dye's fluorescence was quenched through Förster resonance energy transfer (FRET) by a quencher that was connected to the dye by a peptide chain. With sizes ranging from 200-250 nm, the nanoparticles were stable for two weeks. The nanoparticles were tested in vitro with responsive Lewis Lung Carcinoma (LLC) cells and taxane-resistant cells. Upon cell death by paclitaxel exposure, caspase-3 cleaved the peptide chain connecting the dye and the quencher, causing the system to fluoresce. When LLC cells were treated with the system, the nanoreporters fluoresced, but when resistant cells were tested, and when the drug was removed from the system, the nanoreporters did not fluoresce. Since the system screens if a drug can successfully kill a particular tumor, it offers a novel and promising approach to personalized medicine.

Fluorescence spectroscopy of Rhodamine 6G: concentration and solvent effects.

PubMed

Zehentbauer, Florian M; Moretto, Claudia; Stephen, Ryan; Thevar, Thangavel; Gilchrist, John R; Pokrajac, Dubravka; Richard, Katherine L; Kiefer, Johannes

2014-01-01

Rhodamine 6G (R6G), also known as Rhodamine 590, is one of the most frequently used dyes for application in dye lasers and as a fluorescence tracer, e.g., in the area of environmental hydraulics. Knowing the spectroscopic characteristics of the optical emission is key to obtaining high conversion efficiency and measurement accuracy, respectively. In this work, solvent and concentration effects are studied. A series of eight different organic solvents (methanol, ethanol, n-propanol, iso-propanol, n-butanol, n-pentanol, acetone, and dimethyl sulfoxide (DMSO)) are investigated at constant dye concentration. Relatively small changes of the fluorescence spectrum are observed for the different solvents; the highest fluorescence intensity is observed for methanol and lowest for DMSO. The shortest peak wavelength is found in methanol (568 nm) and the longest in DMSO (579 nm). Concentration effects in aqueous R6G solutions are studied over the full concentration range from the solubility limit to highly dilute states. Changing the dye concentration provides tunability between ∼550 nm in the dilute case and ∼620 nm at high concentration, at which point the fluorescence spectrum indicates the formation of R6G aggregates. Copyright © 2013 Elsevier B.V. All rights reserved.

Assessment of existing roadside swales with engineered filter soil: II. Treatment efficiency and in situ mobilization in soil columns.

PubMed

Ingvertsen, Simon T; Cederkvist, Karin; Jensen, Marina B; Magid, Jakob

2012-01-01

Use of roadside infiltration systems using engineered filter soil for optimized treatment has been common practice in Germany for decades, but little documentation is available regarding their long-term treatment performance. Here we present the results of laboratory leaching experiments with intact soil columns (15 cm i.d., 25-30 cm length) collected from two German roadside infiltration swales constructed in 1997. The columns were irrigated with synthetic solutions of unpolluted or polluted (dissolved heavy metals and fine suspended solids) road runoff, as well as a soluble nonreactive tracer (bromide) and a dye (brilliant blue). The experiments were performed at two irrigation rates corresponding to catchment rainfall intensities of approximately 5.1 and 34 mm/h. The bromide curves indicated that preferential flow was more pronounced at high irrigation rates, which was supported by the flow patterns revealed in the dye tracing experiment. Nonetheless, the soils seemed to be capable of retaining most of the dissolved heavy metals from the polluted road runoff at both low and high irrigation rates, except for Cr, which appears to pass through the soil as chromate. Fluorescent microspheres (diameter = 5 μm) used as surrogates for fine suspended solids were efficiently retained by the soils (>99%). However, despite promising treatment abilities, internal mobilization of heavy metals and P from the soil was observed, resulting in potentially critical effluent concentrations of Cu, Zn, and Pb. This is mainly ascribed to high concentrations of in situ mobilized dissolved organic carbon (DOC). Suggestions are provided for possible improvements and further research to minimize DOC mobilization in engineered filter soils. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Asian Tracer Experiment and Atmospheric Modeling (TEAM) Project: Draft Field Work Plan for the Asian Long-Range Tracer Experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Allwine, K Jerry; Flaherty, Julia E.

2007-08-01

This report provides an experimental plan for a proposed Asian long-range tracer study as part of the international Tracer Experiment and Atmospheric Modeling (TEAM) Project. The TEAM partners are China, Japan, South Korea and the United States. Optimal times of year to conduct the study, meteorological measurements needed, proposed tracer release locations, proposed tracer sampling locations and the proposed durations of tracer releases and subsequent sampling are given. Also given are the activities necessary to prepare for the study and the schedule for completing the preparation activities leading to conducting the actual field operations. This report is intended to providemore » the TEAM members with the information necessary for planning and conducting the Asian long-range tracer study. The experimental plan is proposed, at this time, to describe the efforts necessary to conduct the Asian long-range tracer study, and the plan will undoubtedly be revised and refined as the planning goes forward over the next year.« less

The false-negative rate of sentinel node biopsy in patients with breast cancer: a meta-analysis

PubMed Central

Pesek, Sarah; Ashikaga, Taka; Krag, Lars Erik; Krag, David

2012-01-01

Background/Purpose In sentinel node surgery for breast cancer, procedural accuracy is assessed by calculating the false-negative rate. It is important to measure this since there are potential adverse outcomes from missing node metastases. We performed a meta-analysis of published data to assess which method has achieved the lowest false-negative rate. Methods We found 3588 articles concerning sentinel nodes and breast cancer published from 1993 through mid-2011; 183 articles met our inclusion criteria. The studies described in these 183 articles included a total of 9306 patients. We grouped the studies by injection material and injection location. The false-negative rates were analyzed according to these groupings and also by the year in which the articles were published. Results There was significant variation in the false-negative rate over time with a trend to higher rates over time. There was significant variation related to injection material. The use of blue dye alone was associated with the highest false-negative rate. Inclusion of a radioactive tracer along with blue dye resulted in a significantly lower false-negative rate. Although there were variations in the false-negative rate according to injection location, none were significant. This meta-analysis also indicates a significant change over time in the false-negative rate. Discussion/Conclusions The use of blue dye should be accompanied by a radioactive tracer to achieve a significantly lower false-negative rate. Location of injection did not have a significant impact on the false-negative rate. Given the limitations of acquiring appropriate data, the false-negative rate should not be used as a metric for training or quality control. PMID:22569745

10 % fluorescein sodium vs 1 % isosulfan blue in breast sentinel lymph node biopsy.

PubMed

Ren, Lidong; Liu, Zhao; Liang, Mengdi; Wang, Li; Song, Xingli; Wang, Shui

2016-11-03

Sentinel lymph node biopsy (SLNB) is well accepted to be a standard procedure in breast cancer surgery with clinically negative lymph nodes. Isosulfan blue is the first dye approved by the USA Food and Drug Administration for the localization of the lymphatic system. Few alternative tracers have been investigated. In this study, we aimed to compare the differences between 10 % fluorescein sodium and 1 % isosulfan blue in breast sentinel lymph node biopsy and to investigate the feasibility of using 10 % fluorescein sodium as a new dye for breast sentinel lymph node biopsy. A total of 30 New Zealand rabbits were randomly divided into the fluorescein sodium group and the isosulfan blue group (15 rabbits per group). Fluorescein sodium or isosulfan blue was injected subcutaneously into the second pair of mammary areolas. The average fading time of the second lymph nodes in the isosulfan blue group was significantly shorter than that in the fluorescein sodium group. Moreover, the detection rates of SLNs were higher in the fluorescein sodium group than in the isosulfan blue group. No significant differences between the fluorescein sodium group and isosulfan blue group were observed regarding the distances between the detected sentinel lymph nodes and second pair of mammary areolas, the distances between the second lymph nodes and second pair of mammary areolas, the number of detected sentinel lymph nodes and second lymph nodes, the average dyeing time of the sentinel and the second lymph nodes, and the average fading time of the second lymph nodes. In summary, we first reported that fluorescein sodium is a potential new tracer for breast sentinel lymph node biopsy.

Water Droplet Impingement on Simulated Glaze, Mixed, and Rime Ice Accretions

NASA Technical Reports Server (NTRS)

Papadakis, Michael; Rachman, Arief; Wong, See-Cheuk; Yeong, Hsiung-Wei; Hung, Kuohsing E.; Vu, Giao T.; Bidwell, Colin S.

2007-01-01

Water droplet impingement data were obtained at the NASA Glenn Icing Research Tunnel (IRT) for a 36-in. chord NACA 23012 airfoil with and without simulated ice using a dye-tracer method. The simulated ice shapes were defined with the NASA Glenn LEWICE 2.2 ice accretion program and including one rime, four mixed and five glaze ice shapes. The impingement experiments were performed with spray clouds having median volumetric diameters of 20, 52, 111, 154, and 236 micron. Comparisons to the experimental data were generated which showed good agreement for the rime and mixed shapes at lower drop sizes. For larger drops sizes LEWICE 2.2 over predicted the collection efficiencies due to droplet splashing effects which were not modeled in the program. Also for the more complex glaze ice shapes interpolation errors resulted in the over prediction of collection efficiencies in cove or shadow regions of ice shapes.

Interpreting tracer breakthrough tailing from different forced-gradient tracer experiment configurations in fractured bedrock

USGS Publications Warehouse

Becker, M.W.; Shapiro, A.M.

2003-01-01

Conceptual and mathematical models are presented that explain tracer breakthrough tailing in the absence of significant matrix diffusion. Model predictions are compared to field results from radially convergent, weak-dipole, and push-pull tracer experiments conducted in a saturated crystalline bedrock. The models are based upon the assumption that flow is highly channelized, that the mass of tracer in a channel is proportional to the cube of the mean channel aperture, and the mean transport time in the channel is related to the square of the mean channel aperture. These models predict the consistent -2 straight line power law slope observed in breakthrough from radially convergent and weak-dipole tracer experiments and the variable straight line power law slope observed in push-pull tracer experiments with varying injection volumes. The power law breakthrough slope is predicted in the absence of matrix diffusion. A comparison of tracer experiments in which the flow field was reversed to those in which it was not indicates that the apparent dispersion in the breakthrough curve is partially reversible. We hypothesize that the observed breakthrough tailing is due to a combination of local hydrodynamic dispersion, which always increases in the direction of fluid velocity, and heterogeneous advection, which is partially reversed when the flow field is reversed. In spite of our attempt to account for heterogeneous advection using a multipath approach, a much smaller estimate of hydrodynamic dispersivity was obtained from push-pull experiments than from radially convergent or weak dipole experiments. These results suggest that although we can explain breakthrough tailing as an advective phenomenon, we cannot ignore the relationship between hydrodynamic dispersion and flow field geometry at this site. The design of the tracer experiment can severely impact the estimation of hydrodynamic dispersion and matrix diffusion in highly heterogeneous geologic media.

Phytoremediation in education: textile dye teaching experiments.

PubMed

Ibbini, Jwan H; Davis, Lawrence C; Erickson, Larry E

2009-07-01

Phytoremediation, the use of plants to clean up contaminated soil and water, has a wide range of applications and advantages, and can be extended to scientific education. Phytoremediation of textile dyes can be used as a scientific experiment or demonstration in teaching laboratories of middle school, high school and college students. In the experiments that we developed, students were involved in a hands-on activity where they were able to learn about phytoremediation concepts. Experiments were set up with 20-40 mg L(-1) dye solutions of different colors. Students can be involved in the set up process and may be involved in the experimental design. In its simplest forms, they use two-week-old sunflower seedlings and place them into a test tube of known volume of dye solution. Color change and/or dye disappearance can be monitored by visual comparison or with a spectrophotometer. Intensity and extent of the lab work depends on student's educational level, and time constraints. Among the many dyes tested, Evan's Blue proved to be the most readily decolorized azo dye. Results could be observed within 1-2 hours. From our experience, dye phytoremediation experiments are suitable and easy to understand by both college and middle school students. These experiments help visual learners, as students compare the color of the dye solution before and after the plant application. In general, simple phytoremediation experiments of this kind can be introduced in many classes including biology, biochemistry and ecological engineering. This paper presents success stories of teaching phytoremediation to middle school and college students.

Extraction and Quantitation of FD&C Red Dye #40 from Beverages Containing Cranberry Juice: A College-Level Analytical Chemistry Experiment

ERIC Educational Resources Information Center

Rossi, Henry F., III; Rizzo, Jacqueline; Zimmerman, Devon C.; Usher, Karyn M.

2012-01-01

A chemical separation experiment can be an interesting addition to an introductory analytical chemistry laboratory course. We have developed an experiment to extract FD&C Red Dye #40 from beverages containing cranberry juice. After extraction, the dye is quantified using colorimetry. The experiment gives students hands-on experience in using solid…

Quantifying Drosophila food intake: comparative analysis of current methodology

PubMed Central

Deshpande, Sonali A.; Carvalho, Gil B.; Amador, Ariadna; Phillips, Angela M.; Hoxha, Sany; Lizotte, Keith J.; Ja, William W.

2014-01-01

Food intake is a fundamental parameter in animal studies. Despite the prevalent use of Drosophila in laboratory research, precise measurements of food intake remain challenging in this model organism. Here, we compare several common Drosophila feeding assays: the Capillary Feeder (CAFE), food-labeling with a radioactive tracer or a colorimetric dye, and observations of proboscis extension (PE). We show that the CAFE and radioisotope-labeling provide the most consistent results, have the highest sensitivity, and can resolve differences in feeding that dye-labeling and PE fail to distinguish. We conclude that performing the radiolabeling and CAFE assays in parallel is currently the best approach for quantifying Drosophila food intake. Understanding the strengths and limitations of food intake methodology will greatly advance Drosophila studies of nutrition, behavior, and disease. PMID:24681694

Techniques for Reaeration of Hydropower Releases.

DTIC Science & Technology

1983-02-01

peak production from air induction through the baffle ring. The other aeration technique at Norris required modifications to the vacuum-breaker system...of Gas Tracers for Reaeration," Jour. Environ. Div., Proc. Amer. Soc. Civil Engr., 104, 215, April. Rathbun, R. E., 1979, "Estimating the Gas and Dye ...or dissolved in the water, and--last but not least--by the decomposition of bottom mud and by oxidation of the decomposition products stirred up out

Studies on the use of power ultrasound in leather dyeing.

PubMed

Sivakumar, Venkatasubramanian; Rao, Paruchuri Gangadhar

2003-03-01

Uses of power ultrasound for acceleration/performing the chemical as well as physical processes are gaining importance. In conventional leather processing, the diffusion of chemicals through the pores of the skin/hide is achieved by the mechanical agitation caused by the paddle or drumming action. In this work, the use of power ultrasound in the dyeing of leather has been studied with the aim to improve the exhaustion of dye for a given processing time, to reduce the dyeing time and to improve the quality of dyed leather. The effect of power ultrasound in the dyeing of full chrome cow crust leather in a stationary condition is compared with dyeing in the absence of ultrasound as a control experiment both in a stationary as well as conventional drumming condition. An ultrasonic cleaner (150 W and 33 kHz) was used for the experiments. Actual power dissipated into the system was calculated from the calorimetric measurement. Experiments were carried out with variation in type of dye, amount of dye offer, temperature and time. The results show that there is a significant improvement in the percentage exhaustion of dye due to the presence of ultrasound, when compared to dyeing in absence of ultrasound. Experiments on equilibrium dye uptake carried out with or without ultrasound suggest that ultrasound help to improve the kinetics of leather dyeing. The results indicate that leathers dyed in presence of ultrasound have higher colour values, better dye penetration and fastness properties compared to control leathers. The physical testing results show that strength properties of the dyed leathers are not affected due to the application of ultrasound under the given process conditions. Apparent diffusion coefficient during the initial stage of dyeing process, both in presence and in absence of ultrasound was calculated. The values show that ultrasound helps in improving the apparent diffusion coefficient more for the difficult dyeing conditions such as in the case of metal-complex dyes having bigger aggregate size compared to less difficult dyeing conditions.

Propulsive Forces of a Biomimetic Undulating Fin

NASA Astrophysics Data System (ADS)

Kalumuck, Kenneth; Brandt, Alan; Armand, Mehran

2007-11-01

Understanding gained from much recent work on force production mechanisms of aquatic organisms holds great promise for improved undersea vehicle propulsion and maneuvering. One class of fish locomotion is that of the median fin utilized by animals such as squid, cuttlefish, knifefish, and seahorse. It is characterized by undulatory motion that creates traveling waves along the fin. Results of experiments conducted on a submerged mechanical underwater undulating fin test bed are presented. The 0.5 m long fin is mounted to a cylindrical body and consists of a flexible skin attached to ribs driven by an adjustable cam mechanism and variable speed motor that enables changing the characteristics of the undulating wave(s). Forces produced were measured in a captive mode under quiescent conditions as well in the presence of an ambient current. Propulsive forces are characterized as a function of the fin width, oscillation frequency, amplitude, and wavelength. Free swimming experiments were also conducted to determine the point of self propulsion. Flow field structure visualization using dye tracers is presented for selected cases. Estimates of performance and applications for use with larger scale vehicles are discussed.

Simultaneous Analyses and Applications of Multiple Fluorobenzoate and Halide Tracers in Hydrologic Studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hu, Q; Moran, J E

2004-01-22

An analytical method that employs ion chromatography has been developed to more fully exploit the use of fluorobenzoic acids (FBAs) and halides as hydrologic tracers. In a single run, this reliable, sensitive, and robust method can simultaneously separate and quantify halides (fluoride, chloride, bromide, and iodide) and up to seven FBAs from other common groundwater constituents (e.g., nitrate and sulfate). The usefulness of this ion chromatographic (IC) analytical method is demonstrated in both field and laboratory tracer experiments. Field experiments in unsaturated tuff featuring fractures or a fault show that this efficient and cost-effective method helps achieve the objectives ofmore » tracer studies that use multiple FBAs and/or diffusivity tracers (simultaneous use of one or more FBA and halide). The field study examines the hydrologic response of fractures and the matrix to different flow rates and the contribution of matrix diffusion in chemical transport. Laboratory tracer experiments with eight geologic media from across the United States--mostly from Department of Energy facilities where groundwater contamination is prevalent and where subsurface characterization employing tracers has been ongoing or is in need--reveal several insights about tracer transport behavior: (1) Bromide and FBAs are not always transported conservatively. (2) The delayed transport of these anionic tracers is likely related to geologic media characteristics, such as organic matter, pH, iron oxide content, and clay mineralogy. (3) Any use of iodine as a hydrologic tracer should take into account the different sorption behaviors of iodide and iodate and the possible conversion of iodine's initial chemical form. (4) The transport behavior of potential FBA and halide tracers under relevant geochemical conditions should be evaluated before beginning ambitious, large-scale field tracer experiments.« less

Optimal tracers for parallel labeling experiments and 13C metabolic flux analysis: A new precision and synergy scoring system.

PubMed

Crown, Scott B; Long, Christopher P; Antoniewicz, Maciek R

2016-11-01

13 C-Metabolic flux analysis ( 13 C-MFA) is a widely used approach in metabolic engineering for quantifying intracellular metabolic fluxes. The precision of fluxes determined by 13 C-MFA depends largely on the choice of isotopic tracers and the specific set of labeling measurements. A recent advance in the field is the use of parallel labeling experiments for improved flux precision and accuracy. However, as of today, no systemic methods exist for identifying optimal tracers for parallel labeling experiments. In this contribution, we have addressed this problem by introducing a new scoring system and evaluating thousands of different isotopic tracer schemes. Based on this extensive analysis we have identified optimal tracers for 13 C-MFA. The best single tracers were doubly 13 C-labeled glucose tracers, including [1,6- 13 C]glucose, [5,6- 13 C]glucose and [1,2- 13 C]glucose, which consistently produced the highest flux precision independent of the metabolic flux map (here, 100 random flux maps were evaluated). Moreover, we demonstrate that pure glucose tracers perform better overall than mixtures of glucose tracers. For parallel labeling experiments the optimal isotopic tracers were [1,6- 13 C]glucose and [1,2- 13 C]glucose. Combined analysis of [1,6- 13 C]glucose and [1,2- 13 C]glucose labeling data improved the flux precision score by nearly 20-fold compared to widely use tracer mixture 80% [1- 13 C]glucose +20% [U- 13 C]glucose. Copyright © 2016 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Characterization of two-phase flow regimes in horizontal tubes using 81mKr tracer experiments.

PubMed

Oriol, Jean; Leclerc, Jean Pierre; Berne, Philippe; Gousseau, Georges; Jallut, Christian; Tochon, Patrice; Clement, Patrice

2008-10-01

The diagnosis of heat exchangers on duty with respect to flow mal-distributions needs the development of non-intrusive inlet-outlet experimental techniques in order to perform an online fault diagnosis. Tracer experiments are an example of such techniques. They can be applied to mono-phase heat exchangers but also to multi-phase ones. In this case, the tracer experiments are more difficult to perform. In order to check for the capabilities of tracer experiments to be used for the flow mal-distribution diagnosis in the case of multi-phase heat exchangers, we present here a preliminary study on the simplest possible system: two-phase flows in a horizontal tube. (81m)Kr is used as gas tracer and properly collimated NaI (TI) crystal scintillators as detectors. The specific shape of the tracer response allows two-phase flow regimes to be characterized. Signal analysis allows the estimation of the gas phase real average velocity and consequently of the liquid phase real average velocity as well as of the volumetric void fraction. These results are compared successfully to those obtained with liquid phase tracer experiments previously presented by Oriol et al. 2007. Characterization of the two-phase flow regimes and liquid dispersion in horizontal and vertical tubes using coloured tracer and no intrusive optical detector. Chem. Eng. Sci. 63(1), 24-34, as well as to those given by correlations from literature.

Evaluating Contaminants of Emerging Concern as tracers of wastewater from septic systems.

PubMed

James, C Andrew; Miller-Schulze, Justin P; Ultican, Shawn; Gipe, Alex D; Baker, Joel E

2016-09-15

Bacterial and nutrient contamination from anthropogenic sources impacts fresh and marine waters, reducing water quality and restricting recreational and commercial activities. In many cases the source of this contamination is ambiguous, and a tracer or set of tracers linking contamination to source would be valuable. In this work, the effectiveness of utilizing a suite of Contaminants of Emerging Concern (CECs) as tracers of bacteria from human septic system effluent is investigated. Field sampling was performed at more than 20 locations over approximately 18 months and analyzed for a suite of CECs and fecal coliform bacteria. The sampling locations included seeps and small freshwater discharges to the shoreline. Sites were selected and grouped according to level of impact by septic systems as determined by previous field sampling programs. A subset of selected locations had been positively identified as being impacted by effluent from failing septic systems through dye testing. The CECs were selected based on their predominant use, their frequency of use, and putative fate and transport properties. In addition, two rounds of focused sampling were performed at selected sites to characterize short-term variations in CEC and fecal coliform concentrations, and to evaluate environmental persistence following source correction activities. The results indicate that a suite of common use compounds are suitable as generalized tracers of bacterial contamination from septic systems and that fate and transport properties are important in tracer selection. Highly recalcitrant or highly labile compounds likely follow different loss profiles in the subsurface compared to fecal bacteria and are not suitable tracers. The use of more than one tracer compound is recommended due to source variability of septic systems and to account for variations in the subsurface condition. In addition, concentrations of some CECs were measured in receiving waters at levels which suggested the potential for environmental harm, indicating that the possible risk presented from these sources warrants further investigation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Combined use of fluorescence with a magnetic tracer and dilution effect upon sentinel node localization in a murine model.

PubMed

Kuwahata, Akihiro; Ahmed, Muneer; Saeki, Kohei; Chikaki, Shinichi; Kaneko, Miki; Qiu, Wenqi; Xin, Zonghao; Yamaguchi, Shinji; Kaneko, Akiko; Douek, Michael; Kusakabe, Moriaki; Sekino, Masaki

2018-01-01

Sentinel node biopsy using radioisotope and blue dye remains a gold standard for axillary staging in breast cancer patients with low axillary burden. However, limitations in the use of radioisotopes have resulted in emergence of novel techniques. This is the first in vivo study to assess the feasibility of combining the two most common novel techniques of using a magnetic tracer and indocyanine green (ICG) fluorescence. A total of 48 mice were divided into eight groups. Groups 1 and 2, the co-localization groups, received an injection of magnetic tracers (Resovist ® and Sienna+ ® , respectively) and ICG fluorescence; distilled water was used as the solvent of ICG. Groups 3 and 4, the diluted injection groups, received an injection of magnetic tracers (Resovist and Sienna+, respectively) and saline for dilution. Groups 5, 6, and 7, the control groups, received magnetic tracer (Resovist, Sienna+) and ICG alone, respectively. Fluorescent intensity assessment and iron quantification of excised popliteal lymph nodes were performed. Group 1', a co-localization group, received an injection of magnetic tracers (Resovist) and ICG' fluorescence: saline was used as the solvent for ICG. Lymphatic uptake of all tracers was confined to the popliteal nodes only, with co-localization confirmed in all cases and no significant difference in fluorescent intensity or iron content of ex vivo nodes between the groups (except for Group 1'). There was no impact of dilution on the iron content in the diluted Sienna+ group, but it significantly enhanced Resovist uptake ( P =0.005). In addition, there was a significant difference in iron content ( P =0.003) in Group 1'. The combination of a magnetic tracer (Resovist or Sienna+) and ICG fluorescence is feasible for sentinel node biopsy and will potentially allow for precise transcutaneous node identification, in addition to accurate intraoperative assessment. This radioisotope-free "combined technique" warrants further assessment within a clinical trial.

Optimization of Evans blue quantitation in limited rat tissue samples

PubMed Central

Wang, Hwai-Lee; Lai, Ted Weita

2014-01-01

Evans blue dye (EBD) is an inert tracer that measures plasma volume in human subjects and vascular permeability in animal models. Quantitation of EBD can be difficult when dye concentration in the sample is limited, such as when extravasated dye is measured in the blood-brain barrier (BBB) intact brain. The procedure described here used a very small volume (30 µl) per sample replicate, which enabled high-throughput measurements of the EBD concentration based on a standard 96-well plate reader. First, ethanol ensured a consistent optic path length in each well and substantially enhanced the sensitivity of EBD fluorescence spectroscopy. Second, trichloroacetic acid (TCA) removed false-positive EBD measurements as a result of biological solutes and partially extracted EBD into the supernatant. Moreover, a 1:2 volume ratio of 50% TCA ([TCA final] = 33.3%) optimally extracted EBD from the rat plasma protein-EBD complex in vitro and in vivo, and 1:2 and 1:3 weight-volume ratios of 50% TCA optimally extracted extravasated EBD from the rat brain and liver, respectively, in vivo. This procedure is particularly useful in the detection of EBD extravasation into the BBB-intact brain, but it can also be applied to detect dye extravasation into tissues where vascular permeability is less limiting. PMID:25300427

Optimization of Evans blue quantitation in limited rat tissue samples

NASA Astrophysics Data System (ADS)

Wang, Hwai-Lee; Lai, Ted Weita

2014-10-01

Evans blue dye (EBD) is an inert tracer that measures plasma volume in human subjects and vascular permeability in animal models. Quantitation of EBD can be difficult when dye concentration in the sample is limited, such as when extravasated dye is measured in the blood-brain barrier (BBB) intact brain. The procedure described here used a very small volume (30 µl) per sample replicate, which enabled high-throughput measurements of the EBD concentration based on a standard 96-well plate reader. First, ethanol ensured a consistent optic path length in each well and substantially enhanced the sensitivity of EBD fluorescence spectroscopy. Second, trichloroacetic acid (TCA) removed false-positive EBD measurements as a result of biological solutes and partially extracted EBD into the supernatant. Moreover, a 1:2 volume ratio of 50% TCA ([TCA final] = 33.3%) optimally extracted EBD from the rat plasma protein-EBD complex in vitro and in vivo, and 1:2 and 1:3 weight-volume ratios of 50% TCA optimally extracted extravasated EBD from the rat brain and liver, respectively, in vivo. This procedure is particularly useful in the detection of EBD extravasation into the BBB-intact brain, but it can also be applied to detect dye extravasation into tissues where vascular permeability is less limiting.

Travel Times, Streamflow Velocities, and Dispersion Rates in the Yellowstone River, Montana

USGS Publications Warehouse

McCarthy, Peter M.

2009-01-01

The Yellowstone River is a vital natural resource to the residents of southeastern Montana and is a primary source of water for irrigation and recreation and the primary source of municipal water for several cities. The Yellowstone River valley is the primary east-west transportation corridor through southern Montana. This complex of infrastructure makes the Yellowstone River especially vulnerable to accidental spills from various sources such as tanker cars and trucks. In 2008, the U.S. Geological Survey (USGS), in cooperation with the Montana Department of Environmental Quality, initiated a dye-tracer study to determine instream travel times, streamflow velocities, and dispersion rates for the Yellowstone River from Lockwood to Glendive, Montana. The purpose of this report is to describe the results of this study and summarize data collected at each of the measurement sites between Lockwood and Glendive. This report also compares the results of this study to estimated travel times from a transport model developed by the USGS for a previous study. For this study, Rhodamine WT dye was injected at four locations in late September and early October 2008 during reasonably steady streamflow conditions. Streamflows ranged from 3,490 to 3,770 cubic feet per second upstream from the confluence of the Bighorn River and ranged from 6,520 to 7,570 cubic feet per second downstream from the confluence of the Bighorn River. Mean velocities were calculated for each subreach between measurement sites for the leading edge, peak concentration, centroid, and trailing edge at 10 percent of the peak concentration. Calculated velocities for the centroid of the dye plume for subreaches that were completely laterally mixed ranged from 1.83 to 3.18 ft/s within the study reach from Lockwood Bridge to Glendive Bridge. The mean of the completely mixed centroid velocity for the entire study reach, excluding the subreach between Forsyth Bridge and Cartersville Dam, was 2.80 ft/s. Longitudinal dispersion rates of the dye plume for this study ranged from 0.06 ft/s for the subreach upstream from Forsyth Bridge to 2.25 ft/s for the subreach upstream from Calyspo Bridge for subreaches where the dye was completely laterally mixed. A relation was determined between travel time of the peak concentration and time for the dye plume to pass a site (duration). This relation can be used to estimate when the receding concentration of a potential contaminant reaches 10 percent of its peak concentration for accidental spills into the Yellowstone River. Data from this dye-tracer study were used to evaluate velocity and concentration estimates from a transport model developed as part of an earlier USGS study. Comparison of the estimated and calculated velocities for the study reach indicate that the transport model estimates the velocities of the Yellowstone River between Huntley Bridge and Glendive Bridge with reasonable accuracy. Velocities of the peak concentration of the dye plume calculated for this study averaged 10 percent faster than the most probable velocities and averaged 12 percent slower than the maximum probable velocities estimated from the transport model. Peak Rhodamine WT dye concentrations were consistently lower than the transport model estimates except for the most upstream subreach of each dye injection. The most upstream subreach of each dye injection is expected to have a higher concentration because of incomplete lateral mixing. Lower measured peak concentrations for all other sites were expected because Rhodamine WT dye deteriorates when exposed to sunlight and will sorb onto the streambanks and stream bottom. Velocity-streamflow relations developed by using routine streamflow measurements at USGS gaging stations and the transport model can be used to estimate mean streamflow velocities throughout a range of streamflows. The variation in these velocity-streamflow relations emphasizes the uncertainty in estimating the mean streamflow veloc

Hybrid Imaging Labels: Providing the Link Between Mass Spectrometry-Based Molecular Pathology and Theranostics

PubMed Central

Buckle, Tessa; van der Wal, Steffen; van Malderen, Stijn J.M.; Müller, Larissa; Kuil, Joeri; van Unen, Vincent; Peters, Ruud J.B.; van Bemmel, Margaretha E.M.; McDonnell, Liam A.; Velders, Aldrik H.; Koning, Frits; Vanhaeke, Frank; van Leeuwen, Fijs W. B.

2017-01-01

Background: Development of theranostic concepts that include inductively coupled plasma mass spectrometry (ICP-MS) and laser ablation ICP-MS (LA-ICP-MS) imaging can be hindered by the lack of a direct comparison to more standardly used methods for in vitro and in vivo evaluation; e.g. fluorescence or nuclear medicine. In this study a bimodal (or rather, hybrid) tracer that contains both a fluorescent dye and a chelate was used to evaluate the existence of a direct link between mass spectrometry (MS) and in vitro and in vivo molecular imaging findings using fluorescence and radioisotopes. At the same time, the hybrid label was used to determine whether the use of a single isotope label would allow for MS-based diagnostics. Methods: A hybrid label that contained both a DTPA chelate (that was coordinated with either 165Ho or 111In) and a Cy5 fluorescent dye was coupled to the chemokine receptor 4 (CXCR4) targeting peptide Ac-TZ14011 (hybrid-Cy5-Ac-TZ4011). This receptor targeting tracer was used to 1) validate the efficacy of (165Ho-based) mass-cytometry in determining the receptor affinity via comparison with fluorescence-based flow cytometry (Cy5), 2) evaluate the microscopic binding pattern of the tracer in tumor cells using both fluorescence confocal imaging (Cy5) and LA-ICP-MS-imaging (165Ho), 3) compare in vivo biodistribution patterns obtained with ICP-MS (165Ho) and radiodetection (111In) after intravenous administration of hybrid-Cy5-Ac-TZ4011 in tumor-bearing mice. Finally, LA-ICP-MS-imaging (165Ho) was linked to fluorescence-based analysis of excised tissue samples (Cy5). Results: Analysis with both mass-cytometry and flow cytometry revealed a similar receptor affinity, respectively 352 ± 141 nM and 245 ± 65 nM (p = 0.08), but with a much lower detection sensitivity for the first modality. In vitro LA-ICP-MS imaging (165Ho) enabled clear discrimination between CXCR4 positive and negative cells, but fluorescence microscopy was required to determine the intracellular distribution. In vivo biodistribution patterns obtained with ICP-MS (165Ho) and radiodetection (111In) of the hybrid peptide were shown to be similar. Assessment of tracer distribution in excised tissues revealed the location of tracer uptake with both LA-ICP-MS-imaging and fluorescence imaging. Conclusion: Lanthanide-isotope chelation expands the scope of fluorescent/radioactive hybrid tracers to include MS-based analytical tools such as mass-cytometry, ICP-MS and LA-ICP-MS imaging in molecular pathology. In contradiction to common expectations, MS detection using a single chelate imaging agent was shown to be feasible, enabling a direct link between nuclear medicine-based imaging and theranostic methods. PMID:28255355

Ultrasound assisted extraction of natural dye from jackfruit's wood (Artocarpus heterophyllus): The effect of ethanol concentration as a solvent

NASA Astrophysics Data System (ADS)

Febriana, Ike Dayi; Gala, Selfina; Mahfud, Mahfud

2017-05-01

Azo dye are synthetic organic dyes which has an azo group (- N = N -) as chromophore. Azo dye is resistand to decomposition process and harmfull for the environment and human being. Natural dye can be used as substitution of azo dye at textile industry. Natural dye are eco - friendly and can be applied for dyeing of fibrous material. Natural dye can be obtained from natural origin such as leaves, wood, or roots. The wood of jackfruit (Artocarpus heterophyllus) can used as natural source of natural dye. Ultrasound assisted extraction (UAE) is a new method that can be used to extract natural dye from jackfruit's wood. The aim of this research are to study about influence of ethanol concentration as solvent and extraction kinetic. Jackfruit's wood dust from sawmill used for the experimentation were sifted by sieve 35 mesh. Ethanol 96% used as solvent of this experiment and varied the concentration in volume to volume ratio (v/v). Experiment were carried out from 20 to 50 minutes. The result of this experiment shows that ethanol concentration influenced yield of extraction from jackfruit's wood. Concentration of ethanol will be affected polarity of solvent. The Peleg model was used to describe about kinetic model of natural dye extraction. Value of k1 and k2 constant are 0.003835 and 0.04186 respectively.

Development of a Hybrid Tracer for SPECT and Optical Imaging of Bacterial Infections.

PubMed

Welling, Mick M; Bunschoten, Anton; Kuil, Joeri; Nelissen, Rob G H H; Beekman, Freek J; Buckle, Tessa; van Leeuwen, Fijs W B

2015-05-20

In trauma and orthopedic surgery, infection of implants has a major impact on the outcome for patients. Infections may develop either during the initial implantation or during the lifetime of an implant. Both infections, as well as aseptic loosening of the implant, are reasons for revision of the implants. Therefore, discrimination between aseptic-mechanical-loosening and septic-bacterial-loosening of implants is critical during selection of a patient-tailored treatment policy. Specific detection and visualization of infections is a challenge because it is difficult to discriminate infections from inflammation. An imaging tracer that facilitates bacterial identification in a pre- and intraoperative setting may aid the workup for patients suspicious of bacterial infections. In this study we evaluated an antimicrobial peptide conjugated to a hybrid label, which contains both a radioisotope and a fluorescent dye. After synthesis of DTPA-Cy5-UBI29-41 and-when necessary-radiolabeling with (111)In (yield 96.3 ± 2.7%), in vitro binding to various bacterial strains was evaluated using radioactivity counting and confocal fluorescence microscopy. Intramuscular bacterial infections (S. aureus or K. pneumoniae) were also visualized in vivo using a combined nuclear and fluorescence imaging system. The indium-111 was chosen as label as it has a well-defined coordination chemistry, and in pilot studies labeling DTPA-Cy5-UBI29-41 with technetium-99m, we encountered damage to the Cy5 dye after the reduction with SnCl2. As a reference, we used the validated tracer (99m)Tc-UBI29-41. Fast renal excretion of (111)In-DTPA-Cy5-UBI29-41 was observed. Target to nontarget (T/NT) ratios were highest at 2 h post injection: radioactivity counting yielded T/NT ratios of 2.82 ± 0.32 for S. aureus and 2.37 ± 0.05 for K. pneumoniae. Comparable T/NT ratios with fluorescence imaging of 2.38 ± 0.09 for S. aureus and 3.55 ± 0.31 for K. pneumoniae were calculated. Ex vivo confocal microscopy of excised infected tissues showed specific binding of the tracer to bacteria. Using a combination of nuclear and fluorescence imaging techniques, the hybrid antimicrobial peptide conjugate DTPA-Cy5-UBI29-41 was shown to specifically accumulate in bacterial infections. This hybrid tracer may facilitate integration of noninvasive identification of infections and their extent as well as real-time fluorescence guidance during surgical resection of infected areas.

Investigation of Ground Water Pollution at Air Force Plant Number 4, Fort Worth Texas

DTIC Science & Technology

1986-10-01

Dbtibz~o Ud~mxtm!UCTtq! - INVESTIGATION OF GROUND WATER POLLUTION AT - AIR FORCE PLANT NO. 4 FORT WORTH, TEXAS REPORT TO - UNITED STATES AIR FORCE...performed at the plant : Three pairs of Paluxy monitoring wells weze drilled along the south boundary of the plant to determine if pollutants discovered in...a nonhazardous dye tracer in selected wells. v U, INVESTIGATION OF POLLUTION OF GROUND WATER IN THE PALUXY AQUIFER AT AIR FORCE PLANT NO. 4, FORT

Keeping the secret: Insights from repeated catchment-scale tracer experiments under transient conditions

NASA Astrophysics Data System (ADS)

Bogner, Christina; Hauhs, Michael; Lange, Holger

2016-04-01

Catchment-level tracer experiments are generally performed to identify site-specific hydrological response functions of the catchment. The existence and uniqueness of these response functions are hardly ever questioned. Here, we report on a series of replicated tracer experiments in two small first-order catchments, G1 (0.6 ha, roofed) and F4 (2.3 ha, without roof) at Gårdsjön in SW Sweden. The soils in both catchments are shallow (< 50 cm) with the bedrock partly visible at the surface. In G1 (irrigated area approximately 1000 m2), tracer experiments were conducted under a roof between 1993 and 2003 during steady state flow conditions. In contrast, in F4 (irrigated area approximately 500 m2) the experiments were done without a roof mostly at transient conditions. The catchment F4 was equipped with a sprinkler system with a watering capacity of around 38-45 m3 day-1. Natural rainfall comes in addition. A bromide tracer solution was injected to groundwater at a single location about 40 m upstream the weir over a period of less than an hour, and was monitored using a set of groundwater tubes and the weir at the outlet over the following 4 days. In addition, discharge was measured. The experiments were repeated each summer from 2007 to 2015. While steady state conditions were guaranteed in G1, steady runoff has been achieved only four times in F4. We investigated tracer recovery rates against cumulated runoff since tracer application. Substantially different transit times and qualitatively different behaviour of the breakthrough curves were observed, even under steady state conditions. In G1, no single system response function could be identified in 5 replicates. Similarly, the catchment response functions in F4 under steady state differed between experiments. However, they remained in a similar range as in G1. Based on these results, we question the identifiability of flow paths and system properties, such as saturated water content or hydrologic transmissivity, at the catchment scale using tracer experiments. Rather, the series demonstrate the utter importance of the initial and boundary conditions which largely determine the response of the system to inert tracer pulses.

Hydrological characterization of a pre-Inca artificial recharge system to alleviate drought and flooding in the Peruvian Andes

NASA Astrophysics Data System (ADS)

Ochoa-Tocachi, B. F.; Buytaert, W.; Bardales, J. D.; Antiporta, J.; De Bièvre, B.

2017-12-01

The tropical Andes provide a broad range of ecosystem services for downstream cities, with an abundant supply of fresh water among the most important. Because of the highly seasonal precipitation regime and flashy response of the mountainous topography, rivers along the Pacific coast of Peru are prone to generate devastating flash floods during the wet season, and low to non-existing base flows during the dry season. This creates hydrological challenges, especially for Lima, Peru's capital and the second largest desert city in the world. Furthermore, the complex spatiotemporal patterns and the generalized data scarcity of tropical Andean catchments make hydrological predictions very challenging. Long before modern urbanization, pre-Incan communities already recognized the problems of such a variable hydrological regime, and as a response developed artificial recharge systems that increase water availability during the dry season. The specific kind of technique called "Mamanteo" in the central Sierra, consists of diverting flow from a natural small stream to force it to infiltrate on mountain slopes during the rainy season. This water builds in lag times of weeks to months, and resurfaces in springs to be `harvested' during critical dry months. To quantify the storage and regulation capacity of these systems, hydrological monitoring and dye tracer experiments were implemented in two subcatchments of the Chillon river, which is part of the water supply of Lima. We found a clear hydrological connectivity between the infiltration canals and open springs downslope, with travel times of dye tracer between 2 weeks and 8 months -peaking at 2 months- confirming the ability of the system to effectively make water available in the dry season. However, some challenges remain, especially with respect to an accurate quantification of harvestable water and percolated volumes to deeper soil strata, that might be a benefit for Lima in the coastal plain. Nevertheless, there is clear potential to enhance catchment hydrological regulation, and the method has already received widespread interest as part of a portfolio of "green infrastructure" to improve water security and contribute to climate change adaptation for the city of Lima.

Sortase A-mediated site-specific labeling of camelid single-domain antibody-fragments: a versatile strategy for multiple molecular imaging modalities.

PubMed

Massa, Sam; Vikani, Niravkumar; Betti, Cecilia; Ballet, Steven; Vanderhaegen, Saskia; Steyaert, Jan; Descamps, Benedicte; Vanhove, Christian; Bunschoten, Anton; van Leeuwen, Fijs W B; Hernot, Sophie; Caveliers, Vicky; Lahoutte, Tony; Muyldermans, Serge; Xavier, Catarina; Devoogdt, Nick

2016-09-01

A generic site-specific conjugation method that generates a homogeneous product is of utmost importance in tracer development for molecular imaging and therapy. We explored the protein-ligation capacity of the enzyme Sortase A to label camelid single-domain antibody-fragments, also known as nanobodies. The versatility of the approach was demonstrated by conjugating independently three different imaging probes: the chelating agents CHX-A"-DTPA and NOTA for single-photon emission computed tomography (SPECT) with indium-111 and positron emission tomography (PET) with gallium-68, respectively, and the fluorescent dye Cy5 for fluorescence reflectance imaging (FRI). After a straightforward purification process, homogeneous single-conjugated tracer populations were obtained in high yield (30-50%). The enzymatic conjugation did not affect the affinity of the tracers, nor the radiolabeling efficiency or spectral characteristics. In vivo, the tracers enabled the visualization of human epidermal growth factor receptor 2 (HER2) expressing BT474M1-tumors with high contrast and specificity as soon as 1 h post injection in all three imaging modalities. These data demonstrate Sortase A-mediated conjugation as a valuable strategy for the development of site-specifically labeled camelid single-domain antibody-fragments for use in multiple molecular imaging modalities. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Histological Methods for ex vivo Axon Tracing: A Systematic Review

PubMed Central

Heilingoetter, Cassandra L.; Jensen, Matthew B.

2016-01-01

Objectives Axon tracers provide crucial insight into the development, connectivity, and function of neural pathways. A tracer can be characterized as a substance that allows for the visualization of a neuronal pathway. Axon tracers have previously been used exclusively with in vivo studies; however, newer methods of axon tracing can be applied to ex vivo studies. Ex vivo studies involve the examination of cells or tissues retrieved from an organism. These post mortem methods of axon tracing offer several advantages, such as reaching inaccessible tissues and avoiding survival surgeries. Methods In order to evaluate the quality of the ex vivo tracing methods, we performed a systematic review of various experimental and comparison studies to discern the optimal method of axon tracing. Results The most prominent methods for ex vivo tracing involve enzymatic techniques or various dyes. It appears that there are a variety of techniques and conditions that tend to give better fluorescent character, clarity, and distance traveled in the neuronal pathway. We found direct comparison studies that looked at variables such as the type of tracer, time required, effect of temperature, and presence of calcium, however, there are other variables that have not been compared directly. Discussion We conclude there are a variety of promising tracing methods available depending on the experimental goals of the researcher, however, more direct comparison studies are needed to affirm the optimal method. PMID:27098542

Derivation of a Multiparameter Gamma Model for Analyzing the Residence-Time Distribution Function for Nonideal Flow Systems as an Alternative to the Advection-Dispersion Equation

DOE PAGES

Embry, Irucka; Roland, Victor; Agbaje, Oluropo; ...

2013-01-01

A new residence-time distribution (RTD) function has been developed and applied to quantitative dye studies as an alternative to the traditional advection-dispersion equation (AdDE). The new method is based on a jointly combined four-parameter gamma probability density function (PDF). The gamma residence-time distribution (RTD) function and its first and second moments are derived from the individual two-parameter gamma distributions of randomly distributed variables, tracer travel distance, and linear velocity, which are based on their relationship with time. The gamma RTD function was used on a steady-state, nonideal system modeled as a plug-flow reactor (PFR) in the laboratory to validate themore » effectiveness of the model. The normalized forms of the gamma RTD and the advection-dispersion equation RTD were compared with the normalized tracer RTD. The normalized gamma RTD had a lower mean-absolute deviation (MAD) (0.16) than the normalized form of the advection-dispersion equation (0.26) when compared to the normalized tracer RTD. The gamma RTD function is tied back to the actual physical site due to its randomly distributed variables. The results validate using the gamma RTD as a suitable alternative to the advection-dispersion equation for quantitative tracer studies of non-ideal flow systems.« less

A new technology for automatic identification and sorting of plastics for recycling.

PubMed

Ahmad, S R

2004-10-01

A new technology for automatic sorting of plastics, based upon optical identification of fluorescence signatures of dyes, incorporated in such materials in trace concentrations prior to product manufacturing, is described. Three commercial tracers were selected primarily on the basis of their good absorbency in the 310-370 nm spectral band and their identifiable narrow-band fluorescence signatures in the visible band of the spectrum when present in binary combinations. This absorption band was selected because of the availability of strong emission lines in this band from a commercial Hg-arc lamp and high fluorescence quantum yields of the tracers at this excitation wavelength band. The plastics chosen for tracing and identification are HDPE, LDPE, PP, EVA, PVC and PET and the tracers were compatible and chemically non-reactive with the host matrices and did not affect the transparency of the plastics. The design of a monochromatic and collimated excitation source, the sensor system are described and their performances in identifying and sorting plastics doped with tracers at a few parts per million concentration levels are evaluated. In an industrial sorting system, the sensor was able to sort 300 mm long plastic bottles at a conveyor belt speed of 3.5 m.sec(-1) with a sorting purity of -95%. The limitation was imposed due to mechanical singulation irregularities at high speed and the limited processing speed of the computer used.

Histological methods for ex vivo axon tracing: A systematic review.

PubMed

Heilingoetter, Cassandra L; Jensen, Matthew B

2016-07-01

Axon tracers provide crucial insight into the development, connectivity, and function of neural pathways. A tracer can be characterized as a substance that allows for the visualization of a neuronal pathway. Axon tracers have previously been used exclusively with in vivo studies; however, newer methods of axon tracing can be applied to ex vivo studies. Ex vivo studies involve the examination of cells or tissues retrieved from an organism. These post mortem methods of axon tracing offer several advantages, such as reaching inaccessible tissues and avoiding survival surgeries. In order to evaluate the quality of the ex vivo tracing methods, we performed a systematic review of various experimental and comparison studies to discern the optimal method of axon tracing. The most prominent methods for ex vivo tracing involve enzymatic techniques or various dyes. It appears that there are a variety of techniques and conditions that tend to give better fluorescent character, clarity, and distance traveled in the neuronal pathway. We found direct comparison studies that looked at variables such as the type of tracer, time required, effect of temperature, and presence of calcium, however, there are other variables that have not been compared directly. We conclude there are a variety of promising tracing methods available depending on the experimental goals of the researcher, however, more direct comparison studies are needed to affirm the optimal method.

Determination of reaeration-rate coefficients of the Wabash River, Indiana, by the modified tracer technique

USGS Publications Warehouse

Crawford, Charles G.

1985-01-01

The modified tracer technique was used to determine reaeration-rate coefficients in the Wabash River in reaches near Lafayette and Terre Haute, Indiana, at streamflows ranging from 2,310 to 7,400 cu ft/sec. Chemically pure (CP grade) ethylene was used as the tracer gas, and rhodamine-WT dye was used as the dispersion-dilution tracer. Reaeration coefficients determined for a 13.5-mi reach near Terre Haute, Indiana, at streamflows of 3,360 and 7,400 cu ft/sec (71% and 43% flow duration) were 1.4/day and 1.1/day at 20 C, respectively. Reaeration-rate coefficients determined for a 18.4-mile reach near Lafayette, Indiana, at streamflows of 2,310 and 3,420 cu ft/sec (70% and 53 % flow duration), were 1.2/day and 0.8/day at 20 C, respectively. None of the commonly used equations found in the literature predicted reaeration-rate coefficients similar to those measured for reaches of the Wabash River near Lafayette and Terre Haute. The average absolute prediction error for 10 commonly used reaeration equations ranged from 22% to 154%. Prediction error was much smaller in the reach near Terre Haute than in the reach near Lafayette. The overall average of the absolute prediction error for all 10 equations was 22% for the reach near Terre Haute and 128% for the reach near Lafayette. Confidence limits of results obtained from the modified tracer technique were smaller than those obtained from the equations in the literature. 

IMAGE Project: Results of Laboratory Tests on Tracers for Supercritical Conditions.

NASA Astrophysics Data System (ADS)

Brandvoll, Øyvind; Opsahl Viig, Sissel; Nardini, Isabella; Muller, Jiri

2016-04-01

The use of tracers is a well-established technique for monitoring dynamic behaviour of water and gas through a reservoir. In geothermal reservoirs special challenges are encountered due to high temperatures and pressures. In this work, tracer candidates for monitoring water at supercritical conditions (temperature > 374°C, pressure ca 218 bar), are tested in laboratory experiments. Testing of tracers at supercritical water conditions requires experimental set-ups which tolerate harsh conditions with respect to high temperature and pressure. In addition stringent HES (health, environment and safety) factors have to be taken into consideration when designing and performing the experiments. The setup constructed in this project consists of a pressure vessel, high pressure pump, instrumentation for pressure and temperature control and instrumentation required for accurate sampling of tracers. In order to achieve accurate results, a special focus has been paid to the development of the tracer sampling technique. Perfluorinated cyclic hydrocarbons (PFCs) have been selected as tracer candidates. This group of compounds is today commonly used as gas tracers in oil reservoirs. According to the literature they are stable at temperatures up to 400°C. To start with, five PFCs have been tested for thermal stability in static experiments at 375°C and 108 bar in the experimental setup described above. The tracer candidates will be further tested for several months at the relevant conditions. Preliminary results indicate that some of the PFC compounds show stability after three months. However, in order to arrive at conclusive results, the experiments have to be repeated over a longer period and paying special attention to more accurate sampling procedures.

Infra-red technique for cerebral blood flow: comparison with /sup 133/Xenon clearance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Colacino, J.M.; Grubb, B.; Joebsis, F.F.

A rapid infra-red optical technique has been developed for the measurement of cerebral blood flow. The method measures optical density changes across the intact skull during the passage of a bolus of the dye. Cardio-Green (CG). The clearance curves obtained for CG boluses are very short (less than 30 sec) in comparison with those obtained with tracers such as /sup 133/Xenon (10-30 min) that distribute into cerebral tissue. The volume of distribution of CG is totally intravascular, and the dye is relatively slowly cleared from the body. The important advantages of this spectrophotometric technique are its speed, versatility, and themore » avoidance of radioactive materials. The differential spectrophotometer used in this study, with trivial modifications, has been used to monitor changes in brain blood volume, oxygen saturation of hemoglobin, and cortical mitochondrial respiratory function, which illustrate the versatility of the technique for neurological assessments.« less

Fungal functioning in a pine forest: evidence from a 15N-labeled global change experiment

Treesearch

Erik A. Hobbie; Linda T.A. van Diepen; Erik A. Lilleskov; Andrew P. Oiumette; Adrien C. Finzi; Kirsten S. Hofmockel

2014-01-01

We used natural and tracer nitrogen (N) isotopes in a Pinus taeda free air CO2 enrichment (FACE) experiment to investigate functioning of ectomycorrhizal and saprotrophic fungi in N cycling. Fungal sporocarps were sampled in 2004 (natural abundance and 15N tracer) and 2010 (tracer) and δ15...

Food resources of stream macroinvertebrates determined by natural-abundance stable C and N isotopes and a 15N tracer addition

Treesearch

Patrick J. Mulholland; Jennifer L. Tank; Diane M. Sanzone; Wilfrid M. Wollheim; Bruce J. Peterson; Jackson R. Webster; Judy L. Meyer

2000-01-01

Trophic relationships were examined using natural-abundance 13C and 15N analyses and a 15N-tracer addition experiment in Walker Branch, a 1st-order forested stream in eastern Tennessee. In the 15N-tracer addition experiment, we added 15NH4...

LARGE-SCALE NATURAL GRADIENT TRACER TEST IN SAND AND GRAVEL, CAPE COD, MASSACHUSETTS - 1. EXPERIMENTAL DESIGN AND OBSERVED TRACER MOVEMENT

EPA Science Inventory

A large-scale natural gradient tracer experiment was conducted on Cape Cod, Massachusetts, to examine the transport and dispersion of solutes in a sand and gravel aquifer. The nonreactive tracer, bromide, and the reactive tracers, lithium and molybdate, were injected as a pulse i...

An Interdisciplinary Experiment: Azo-Dye Metabolism by "Staphylococcus Aureus"

ERIC Educational Resources Information Center

Brocklesby, Kayleigh; Smith, Robert; Sharp, Duncan

2012-01-01

An interdisciplinary and engaging practical is detailed which offers great versatility in the study of a qualitative and quantitative metabolism of azo-dyes by "Staphylococcus aureus". This practical has broad scope for adaptation in the number and depth of variables to allow a focused practical experiment or small research project. Azo-dyes are…

Modelling an induced thermal plume with data from electrical resistivity tomography and distributed temperature sensing: a case study in northeast Italy

NASA Astrophysics Data System (ADS)

Cultrera, Matteo; Boaga, Jacopo; Di Sipio, Eloisa; Dalla Santa, Giorgia; De Seta, Massimiliano; Galgaro, Antonio

2018-05-01

Groundwater tracer tests are often used to improve aquifer characterization, but they present several disadvantages, such as the need to pour solutions or dyes into the aquifer system and alteration of the water's chemical properties. Thus, tracers can affect the groundwater flow mechanics and data interpretation becomes more complex, hindering effective study of ground heat pumps for low enthalpy geothermal systems. This paper presents a preliminary methodology based on a multidisciplinary application of heat as a tracer for defining the main parameters of shallow aquifers. The field monitoring techniques electrical resistivity tomography (ERT) and distributed temperature sensing (DTS) are noninvasive and were applied to a shallow-aquifer test site in northeast Italy. The combination of these measurement techniques supports the definition of the main aquifer parameters and therefore the construction of a reliable conceptual model, which is then described through the numerical code FEFLOW. This model is calibrated with DTS and validated by ERT outcomes. The reliability of the numerical model in terms of fate and transport is thereby enhanced, leading to the potential for better environmental management and protection of groundwater resources through more cost-effective solutions.

Combined use of natural and artificial tracers to determine the hydrogeological functioning of a karst aquifer: the Villanueva del Rosario system (Andalusia, southern Spain)

NASA Astrophysics Data System (ADS)

Mudarra, M.; Andreo, B.; Marín, A. I.; Vadillo, I.; Barberá, J. A.

2014-08-01

Analysis of natural responses of karst springs provides information on the behavior of the aquifers they drain. Detailed monitoring and qualitative and quantitative analyses of natural responses, and environmental—total organic carbon (TOC), NO3 -, Cl- and intrinsic fluorescence—and artificial (fluorescent dye) tracers, in the water drained by Villanueva del Rosario spring (southern Spain), suggest the existence of a conduit flow system with rapid flows and very short transit times of water through the aquifer. This is in agreement with uranine and eosin breakthrough curves and with simple numerical models done using these data. However, due to the low capacity for natural regulation, not all the recharge effects are simultaneously transmitted to the spring water; given a single input, the system modulates and transfers hydrodynamic variations faster than variations of chemical composition and of water temperature. Additionally, time lags between maximum concentrations of natural and artificial tracers show that the global system response (including diffuse infiltration) is faster and more sensitive than that produced from infiltration concentrated at a single point on the surface (sinkholes).

Sentinel lymph node navigation surgery for early stage gastric cancer.

PubMed

Mitsumori, Norio; Nimura, Hiroshi; Takahashi, Naoto; Kawamura, Masahiko; Aoki, Hiroaki; Shida, Atsuo; Omura, Nobuo; Yanaga, Katsuhiko

2014-05-21

We attempted to evaluate the history of sentinel node navigation surgery (SNNS), technical aspects, tracers, and clinical applications of SNNS using Infrared Ray Electronic Endoscopes (IREE) combined with Indocyanine Green (ICG). The sentinel lymph node (SLN) is defined as a first lymph node (LN) which receives cancer cells from a primary tumor. Reports on clinical application of SNNS for gastric cancers started to appear since early 2000s. Two prospective multicenter trials of SNNS for gastric cancer have also been accomplished in Japan. Kitagawa et al reported that the endoscopic dual (dye and radioisotope) tracer method for SN biopsy was confirmed acceptable and effective when applied to the early-stage gastric cancer (EGC). We have previously reported the usefulness of SNNS in gastrointestinal cancer using ICG as a tracer, combined with IREE (Olympus Optical, Tokyo, Japan) to detect SLN. LN metastasis rate of EGC is low. Hence, clinical application of SNNS for EGC might lead us to avoid unnecessary LN dissection, which could preserve the patient's quality of life after operation. The most ideal method of SNNS should allow secure and accurate detection of SLN, and real time observation of lymphatic flow during operation.

Sentinel lymph node navigation surgery for early stage gastric cancer

PubMed Central

Mitsumori, Norio; Nimura, Hiroshi; Takahashi, Naoto; Kawamura, Masahiko; Aoki, Hiroaki; Shida, Atsuo; Omura, Nobuo; Yanaga, Katsuhiko

2014-01-01

We attempted to evaluate the history of sentinel node navigation surgery (SNNS), technical aspects, tracers, and clinical applications of SNNS using Infrared Ray Electronic Endoscopes (IREE) combined with Indocyanine Green (ICG). The sentinel lymph node (SLN) is defined as a first lymph node (LN) which receives cancer cells from a primary tumor. Reports on clinical application of SNNS for gastric cancers started to appear since early 2000s. Two prospective multicenter trials of SNNS for gastric cancer have also been accomplished in Japan. Kitagawa et al reported that the endoscopic dual (dye and radioisotope) tracer method for SN biopsy was confirmed acceptable and effective when applied to the early-stage gastric cancer (EGC). We have previously reported the usefulness of SNNS in gastrointestinal cancer using ICG as a tracer, combined with IREE (Olympus Optical, Tokyo, Japan) to detect SLN. LN metastasis rate of EGC is low. Hence, clinical application of SNNS for EGC might lead us to avoid unnecessary LN dissection, which could preserve the patient’s quality of life after operation. The most ideal method of SNNS should allow secure and accurate detection of SLN, and real time observation of lymphatic flow during operation. PMID:24914329

Neutrally buoyant tracers in hydrogeophysics: Field demonstration in fractured rock

NASA Astrophysics Data System (ADS)

Shakas, Alexis; Linde, Niklas; Baron, Ludovic; Selker, John; Gerard, Marie-Françoise; Lavenant, Nicolas; Bour, Olivier; Le Borgne, Tanguy

2017-04-01

Electrical and electromagnetic methods are extensively used to map electrically conductive tracers within hydrogeologic systems. Often, the tracers used consist of dissolved salt in water, leading to a denser mixture than the ambient formation water. Density effects are often ignored and rarely modeled but can dramatically affect transport behavior and introduce dynamics that are unrepresentative of the response obtained with classical tracers (e.g., uranine). We introduce a neutrally buoyant tracer consisting of a mixture of salt, water, and ethanol and monitor its movement during push-pull experiments in a fractured rock aquifer using ground-penetrating radar. Our results indicate a largely reversible transport process and agree with uranine-based push-pull experiments at the site, which is in contrast to results obtained using dense saline tracers. We argue that a shift toward neutrally buoyant tracers in both porous and fractured media would advance hydrogeophysical research and enhance its utility in hydrogeology.

Additional increased effects of mannitol-temozolomide combined treatment on blood-brain barrier permeability.

PubMed

Choi, Chunggab; Kim, Hye Min; Shon, Jeeheun; Park, Jiae; Kim, Hyeong-Taek; Oh, Seung-Hun; Kim, Nam Keun; Kim, Ok Joon

2018-03-04

The blood-brain barrier (BBB) is major obstacle in drug or stem cell treatment in chronic stroke. We hypothesized that adding mannitol to temozolomide (TMZ) is a practically applicable method for resolving the low efficacy of intravenous mannitol therapy. In this study, we investigated whether BBB permeability could be increased by this combined treatment. First, we established a chronic ischemic stroke rat model and examined changes in leakage of Evans blue dye within a lesion site, and in expression of tight junction proteins (TJPs), by this combined treatment. Additionally, in an in vitro BBB model using trans-wells, we analyzed changes in diffusion of a fluorescent tracer and in expression of TJPs. Mannitol-TMZ combined treatment not only increased the amount of Evans blue dye within the stroke lesion site, but also reduced occludin expression in rat brain microvessels. The in vitro study also showed that combined treatment increased the permeability for two different-sized fluorescent tracers, especially large size, and decreased expression of TJPs, such as occludin and ZO-1. Increased BBB permeability effects were more prominent with combined than with single treatments. Mannitol-TMZ combined treatment induced a decrease of TJPs with a consequent increase in BBB permeability. This combined treatment is clinically useful and might provide new therapeutic options by enabling efficient intracerebral delivery of various drugs that could not otherwise be used to treat many CNS diseases due to their inability to penetrate the BBB. Copyright © 2018 Elsevier Inc. All rights reserved.

Evaluation of tracer tests completed in 1999 and 2000 on the upper Santa Clara River, Los Angeles and Ventura Counties, California

USGS Publications Warehouse

Cox, Marisa H.; Mendez, Gregory O.; Kratzer, Charles R.; Reichard, Eric G.

2003-01-01

The interaction of surface water and hyporheic water along the Santa Clara River in Los Angeles and Ventura Counties, California, was evaluated by conducting tracer tests and analyzing water-quality data under different flow conditions in October 1999 and May 2000. Tracer and water-quality samples were collected at multiple river and hyporheic sites as well as at the Los Angeles County Sanitation Districts Saugus and Valencia Water Reclamation Plants. These water reclamation plants provide the main source of base flow in the river. Rhodamine WT dye was injected into the river to determine river traveltimes and to indicate when Lagrangian water-quality sampling could be performed at each site. Sodium bromide was injected into the river at a constant rate at the water reclamation plants to evaluate the surface-water and shallow ground-water interactions in the hyporheic zone. In the upper reach of the study area, which extends 2.9 river miles downstream from the Saugus Water Reclamation Plant, traveltime was 3.2 hours during May 2000. In the lower reach, which extends 14.1 river miles downstream from the Valencia Water Reclamation Plant, traveltime was 9.6 hours during October 1999 and 7.1 hours during May 2000. The sodium bromide tracer was detected at both hyporheic locations sampled during October 1999, and at two of the three hyporheic locations sampled during May 2000. On the basis of Rhodamine dye tests, flow curves were constructed from the discharge measurements in the Valencia reach. Flow-curve results indicate net gains in flow throughout most, but not all, of the upper parts of the reach and net losses in flow at the lower part of the reach. Lagrangian water-quality sampling provides information on the changes in chemistry as the water flows downstream from the water reclamation plants. Along both reaches there is an increase in sulfate (40-60 mg/L in the Saugus reach and 160 mg/L in the Valencia reach) and a decrease in chloride (about 45 mg/L in the Saugus reach and about 10 mg/L in the Valencia reach). The increasing sulfate concentrations are consistent with discharge of higher sulfate ground water into the river. Along both reaches there is a trend of decreasing ammonia and slightly increasing nitrate concentrations. This trend is consistent with nitrification. Samples were also analyzed for numerous compounds associated with wastewater, but analysis focused on four indicators. Concentrations of wastewater indicators in the Santa Clara River were low and decreased downstream from the reclamation plants. There is general consistency between the chemical and tracer data collected from the hyporheic and the river-aquifer flow regime within a reach. The water quality at the hyporheic site in a gaining reach of the river resembled that of the local ground water and no wastewater indicators or injected tracers were observed; whereas, the water quality at the hyporheic sites in a losing reach of the river resembled the water quality of the river at the corresponding river site, and injected tracers were observed.

Design and utilisation of protocols to characterise dynamic PET uptake of two tracers using basis pursuit.

PubMed

Bell, Christopher; Puttick, Simon; Rose, Stephen; Smith, Jye; Thomas, Paul; Dowson, Nicholas

2017-06-21

Imaging using more than one biological process using PET could be of great utility, but despite previously proposed approaches to dual-tracer imaging, it is seldom performed. The alternative of performing multiple scans is often infeasible for clinical practice or even in research studies. Dual-tracer PET scanning allows for multiple PET radiotracers to be imaged within the same imaging session. In this paper we describe our approach to utilise the basis pursuit method to aid in the design of dual-tracer PET imaging experiments, and later in separation of the signals. The advantage of this approach is that it does not require a compartment model architecture to be specified or even that both signals are distinguishable in all cases. This means the method for separating dual-tracer signals can be used for many feasible and useful combinations of biology or radiotracer, once an appropriate scanning protocol has been decided upon. Following a demonstration in separating the signals from two consecutively injected radionuclides in a controlled experiment, phantom and list-mode mouse experiments demonstrated the ability to test the feasibility of dual-tracer imaging protocols for multiple injection delays. Increases in variances predicted for kinetic macro-parameters V D and K I in brain and tumoral tissue were obtained when separating the synthetically combined data. These experiments confirmed previous work using other approaches that injections delays of 10-20 min ensured increases in variance were kept minimal for the test tracers used. On this basis, an actual dual-tracer experiment using a 20 min delay was performed using these radio tracers, with the kinetic parameters (V D and K I ) extracted for each tracer in agreement with the literature. This study supports previous work that dual-tracer PET imaging can be accomplished provided certain constraints are adhered to. The utilisation of basis pursuit techniques, with its removed need to specify a model architecture, allows the feasibility of a range of imaging protocols to be investigated via simulation in a straight-forward manner for a wide range of possible scenarios. The hope is that the ease of utilising this approach during feasibility studies and in practice removes any perceived technical barrier to performing dual-tracer imaging.

Design and utilisation of protocols to characterise dynamic PET uptake of two tracers using basis pursuit

NASA Astrophysics Data System (ADS)

Bell, Christopher; Puttick, Simon; Rose, Stephen; Smith, Jye; Thomas, Paul; Dowson, Nicholas

2017-06-01

Imaging using more than one biological process using PET could be of great utility, but despite previously proposed approaches to dual-tracer imaging, it is seldom performed. The alternative of performing multiple scans is often infeasible for clinical practice or even in research studies. Dual-tracer PET scanning allows for multiple PET radiotracers to be imaged within the same imaging session. In this paper we describe our approach to utilise the basis pursuit method to aid in the design of dual-tracer PET imaging experiments, and later in separation of the signals. The advantage of this approach is that it does not require a compartment model architecture to be specified or even that both signals are distinguishable in all cases. This means the method for separating dual-tracer signals can be used for many feasible and useful combinations of biology or radiotracer, once an appropriate scanning protocol has been decided upon. Following a demonstration in separating the signals from two consecutively injected radionuclides in a controlled experiment, phantom and list-mode mouse experiments demonstrated the ability to test the feasibility of dual-tracer imaging protocols for multiple injection delays. Increases in variances predicted for kinetic macro-parameters V D and K I in brain and tumoral tissue were obtained when separating the synthetically combined data. These experiments confirmed previous work using other approaches that injections delays of 10-20 min ensured increases in variance were kept minimal for the test tracers used. On this basis, an actual dual-tracer experiment using a 20 min delay was performed using these radio tracers, with the kinetic parameters (V D and K I) extracted for each tracer in agreement with the literature. This study supports previous work that dual-tracer PET imaging can be accomplished provided certain constraints are adhered to. The utilisation of basis pursuit techniques, with its removed need to specify a model architecture, allows the feasibility of a range of imaging protocols to be investigated via simulation in a straight-forward manner for a wide range of possible scenarios. The hope is that the ease of utilising this approach during feasibility studies and in practice removes any perceived technical barrier to performing dual-tracer imaging.

A Concurrent Flow Model for Extraction during Transcapillary Passage

PubMed Central

Bassingthwaighte, James B.

2010-01-01

A model for capillary-tissue exchange in a uniformly perfused organ with uniform capillary transit times and no diffusional capillary interactions was designed to permit the exploration of the influences of various parameters on the interpretation of indicator-dilution curves obtained at the venous outflow following the simultaneous injection of tracers into the arterial inflow. These parameters include tissue geometric factors, longitudinal diffusion and volumes of distribution of tracers in blood and tissue, hematocrit, volumes of nonexchanging vessels and the sampling system, capillary permeability, P. capillary surface area, S, and flow of blood- or solute-containing fluid, Fs′. An assumption of instantaneous radial diffusion in the extravascular region is appropriate when intercapillary distances are small, as they are in the heart, or permeabilities are low, as they are for lipophobic solutes. Numerical solutions were obtained for dispersed input functions similar to normal intravascular dye-dilution curves. Axial extravascular diffusion showed a negligible influence at low permeabilities. The “instantaneous extraction” of a permeating solute can provide an estimate of PS/Fs′, the ratio of the capillary permeability–surface area product to the flow, when PS/Fs′ lies between approximately 0.05 and 3.0; the limits of the range depend on the extravascular volume of distribution and the influences of intravascular dispersion. The most accurate estimates were obtained when experiments were designed so that PS/Fs′ was between 0.2 and 1.0 or peak extractions were between 0.1 and 0.6. PMID:4608628

Experimental study on wake structure of single rising clean bubble

NASA Astrophysics Data System (ADS)

Sato, Ayaka; Takedomi, Yuta; Shirota, Minori; Sanada, Toshiyuki; Watanabe, Masao

2007-11-01

Wake structure of clean bubble rising in quiescent silicone oil solution of photochromic dye is experimentally studied. A single bubble is generated, immediately after UV sheet light illuminates the part of the liquid just above the bubble generation nozzle in order to activate photochromic dye. Once the bubble passes across the colored part of the liquid, the bubble is accompanied by some portion of activated dye tracers; hence the flow structure in the rear of the single rising bubble is visualized. We capture stereo images of both wake structure and bubble motion. We study how wake structure changes with the increase in bubble size. We observe the stable axisymmetric wake structure, which is called `standing eddy' when bubble size is relatively small, and then wake structure becomes unstable and starts to oscillate with the increase in bubble size. With further increase in bubble size, a pair of streamwise vortices, which is called `double thread', is observed. We discuss in detail this transition from the steady wake to unsteady wake structure, especially double thread wake development and hairpin vortices shedding, in relation to the transition from rectilinear to spiral or zigzag bubble motions.

Fluorescence imaging to study cancer burden on lymph nodes

NASA Astrophysics Data System (ADS)

D'Souza, Alisha V.; Elliott, Jonathan T.; Gunn, Jason R.; Samkoe, Kimberley S.; Tichauer, Kenneth M.; Pogue, Brian W.

2015-03-01

Morbidity and complexity involved in lymph node staging via surgical resection and biopsy calls for staging techniques that are less invasive. While visible blue dyes are commonly used in locating sentinel lymph nodes, since they follow tumor-draining lymphatic vessels, they do not provide a metric to evaluate presence of cancer. An area of active research is to use fluorescent dyes to assess tumor burden of sentinel and secondary lymph nodes. The goal of this work was to successfully deploy and test an intra-nodal cancer-cell injection model to enable planar fluorescence imaging of a clinically relevant blue dye, specifically methylene blue along with a cancer targeting tracer, Affibody labeled with IRDYE800CW and subsequently segregate tumor-bearing from normal lymph nodes. This direct-injection based tumor model was employed in athymic rats (6 normal, 4 controls, 6 cancer-bearing), where luciferase-expressing breast cancer cells were injected into axillary lymph nodes. Tumor presence in nodes was confirmed by bioluminescence imaging before and after fluorescence imaging. Lymphatic uptake from the injection site (intradermal on forepaw) to lymph node was imaged at approximately 2 frames/minute. Large variability was observed within each cohort.

Tracer tomography: design concepts and field experiments using heat as a tracer.

PubMed

Doro, Kennedy O; Cirpka, Olaf A; Leven, Carsten

2015-04-01

Numerical and laboratory studies have provided evidence that combining hydraulic tomography with tomographic tracer tests could improve the estimation of hydraulic conductivity compared with using hydraulic data alone. Field demonstrations, however, have been lacking so far, which we attribute to experimental difficulties. In this study, we present a conceptual design and experimental applications of tracer tomography at the field scale using heat as a tracer. In our experimental design, we improve active heat tracer testing by minimizing possible effects of heat losses, buoyancy, viscosity, and changing boundary conditions. We also utilize a cost-effective approach of measuring temperature changes in situ at high resolution. We apply the presented method to the 8 m thick heterogeneous, sandy gravel, alluvial aquifer at the Lauswiesen Hydrogeological Research Site in Tübingen, Germany. Results of our tomographic heat-tracer experiments are in line with earlier work on characterizing the aquifer at the test site. We demonstrate from the experimental perspective that tracer tomography is applicable and suitable at the field scale using heat as a tracer. The experimental results also demonstrate the potential of heat-tracer tomography as a cost-effective means for characterizing aquifer heterogeneity. © 2014, National Ground Water Association.

Fluorescence guided surgery and tracer-dose, fact or fiction?

PubMed

KleinJan, Gijs H; Bunschoten, Anton; van den Berg, Nynke S; Olmos, Renato A Valdès; Klop, W Martin C; Horenblas, Simon; van der Poel, Henk G; Wester, Hans-Jürgen; van Leeuwen, Fijs W B

2016-09-01

Fluorescence guidance is an upcoming methodology to improve surgical accuracy. Challenging herein is the identification of the minimum dose at which the tracer can be detected with a clinical-grade fluorescence camera. Using a hybrid tracer such as indocyanine green (ICG)-(99m)Tc-nanocolloid, it has become possible to determine the accumulation of tracer and correlate this to intraoperative fluorescence-based identification rates. In the current study, we determined the lower detection limit of tracer at which intraoperative fluorescence guidance was still feasible. Size exclusion chromatography (SEC) provided a laboratory set-up to analyze the chemical content and to simulate the migratory behavior of ICG-nanocolloid in tissue. Tracer accumulation and intraoperative fluorescence detection findings were derived from a retrospective analysis of 20 head-and-neck melanoma patients, 40 penile and 20 prostate cancer patients scheduled for sentinel node (SN) biopsy using ICG-(99m)Tc-nanocolloid. In these patients, following tracer injection, single photon emission computed tomography fused with computed tomography (SPECT/CT) was used to identify the SN(s). The percentage injected dose (% ID), the amount of ICG (in nmol), and the concentration of ICG in the SNs (in μM) was assessed for SNs detected on SPECT/CT and correlated with the intraoperative fluorescence imaging findings. SEC determined that in the hybrid tracer formulation, 41 % (standard deviation: 12 %) of ICG was present in nanocolloid-bound form. In the SNs detected using fluorescence guidance a median of 0.88 % ID was present, compared to a median of 0.25 % ID in the non-fluorescent SNs (p-value < 0.001). The % ID values could be correlated to the amount ICG in a SN (range: 0.003-10.8 nmol) and the concentration of ICG in a SN (range: 0.006-64.6 μM). The ability to provide intraoperative fluorescence guidance is dependent on the amount and concentration of the fluorescent dye accumulated in the lesion(s) of interest. Our findings indicate that intraoperative fluorescence detection with ICG is possible above a μM concentration.

Assessment of a Geothermal Doublet in the Malm Aquifer Using a Push-Pull Tracer Test

NASA Astrophysics Data System (ADS)

Lafogler, Mark; Somogyi, Gabriella; Nießner, Reinhard; Baumann, Thomas

2013-04-01

Geothermal exploration of the Malm aquifer in Bavaria is highly successful. Data about the long-term operation, however, is still scarce, although detailed knowledge about the processes occurring in the aquifer is a key requirement to run geothermal facilities efficiently and economically. While there usually is a constant flow of data from the production well (temperatures, hydraulic data, hydrochemical conditions, gas composition) not even the temperatures in the immediate surrounding of the reinjection well are accessible or known. In 2011 the geothermal facility in Pullach was extended with a third geothermal well reaching into the Malm aquifer which is now used as a reinjection well. The former reinjection well was converted to a production well after 5 years of operation. This setting offers a unique opportunity to study the processes in the vicinity of a reinjection well and provides the data base to describe the hydraulic, thermal and hydrochemical performance of the reservoir. The viscosity of the reinjected cold water is increasing by 60% compared to the production well, thus one would expect an increase of the reinjection pressure as the cold water plume spreads around the reinjection well. Measurements, however, show a significant decrease of the reinjection pressure, suggesting processes in the aquifer which positively change the hydraulic properties and overcompensate the viscosity effects. Hydrochemical data and modeling indicate that a dissolution of the matrix along the flow pathways is responsible for the decreasing reinjection pressures. The change of the flow direction from reinjection to production was used to conduct a push-pull tracer test. Here, a series of fluorescent dye pulses was added to the reinjected water before the former reinjection well was shut down (push phase). These tracers included a conservative tracer (Fluorescein), surface-sensitive tracers (Eosin/Sulforhodamin B), and a NAPL-sensitive tracer (Na-Naphthionate). After changing to production mode in October 2012 the pull phase was started. The different behavior of the tracers within the reservoir delivers data about dispersion, sorption properties, matrix interaction and the regional flux. First tracer breakthrough curves point to a significant heterogeneity of the flow pathways and that regional flow is not negligible.

The carbocyanine dye DiD labels in vitro and in vivo neural stem cells of the subventricular zone as well as myelinated structures following in vivo injection in the lateral ventricle.

PubMed

Carradori, Dario; Barreau, Kristell; Eyer, Joël

2016-02-01

Carbocyanines are fluorescent lipophilic cationic dyes used since the early 1980s as neuronal tracers. Several applications of these compounds have been developed thanks to their low cell toxicity, lateral diffusion within the cellular membranes, and good photostability. 1,1'-Dioctadecyl-3,3,3',3'-tetramethylindodicarbocyanine 4-chlorobenzenesulfonate (DiD) is an interesting component of this family because, in addition to the classic carbocyanine properties, it has a longer wavelength compared with its analogues. That makes DiD an excellent carbocyanine for labeling cells and tissues with significant intrinsic fluorescence. Drug encapsulation, drug delivery, and cellular transplantation are also fields using DiD-based systems where having detailed knowledge about its behavior as a single entity is important. Recently, promising studies concerned neural stem cells from the subventricular zone of the lateral ventricle in the brain (their natural niche) and their potential therapeutic use. Here, we show that DiD is able to label these stem cells in vitro and present basilar information concerning its pharmacokinetics, concentrations, and microscope protocols. Moreover, when DiD is injected in vivo in the cerebrospinal fluid present in the lateral ventricle of rat, it also labels stem cells as well as myelinated structures of the caudoputamen. This analysis provides a database to consult when planning experiments concerning DiD and neural stem cells from the subventricular zone. © 2015 Wiley Periodicals, Inc.

Study on pigment dyeing opportunities of polyester and cotton-mix fiber

NASA Astrophysics Data System (ADS)

Nabieva, I. A.; Shamukimova, M. B.; Artikboeva, R. M.

2017-11-01

The process of coloring the dyeing pigments in polyether and cotton fibers for different fabrics, which are inclined to dye, have been studied in this article. Based on the experiences on pigments dyeing, it was suggested to study the materials with the dyeing pigment substances with the purpose of improving the technology of color forming.

Interaction of phenazinium dyes with double-stranded poly(A): Spectroscopy and isothermal titration calorimetry studies

NASA Astrophysics Data System (ADS)

Khan, Asma Yasmeen; Saha, Baishakhi; Kumar, Gopinatha Suresh

2014-10-01

A comprehensive study on the binding of phenazinium dyes viz. janus green B, indoine blue, safranine O and phenosafranine with double stranded poly(A) using various spectroscopic and calorimetric techniques is presented. A higher binding of janus green B and indoine blue over safranine O and phenosafranine to poly(A) was observed from all experiments. Intercalative mode of binding of the dyes was inferred from fluorescence polarization anisotropy, iodide quenching and viscosity experiments. Circular dichroism study revealed significant perturbation of the secondary structure of poly(A) on binding of these dyes. Results from isothermal titration calorimetry experiments suggested that the binding was predominantly entropy driven with a minor contribution of enthalpy to the standard molar Gibbs energy. The results presented here may open new opportunities in the application of these dyes as RNA targeted therapeutic agents.

The effect of entrapped nonaqueous phase liquids on tracer transport in heterogeneous porous media: Laboratory experiments at the intermediate scale

USGS Publications Warehouse

Barth, Gilbert R.; Illangasekare, T.H.; Rajaram, H.

2003-01-01

This work considers the applicability of conservative tracers for detecting high-saturation nonaqueous-phase liquid (NAPL) entrapment in heterogeneous systems. For this purpose, a series of experiments and simulations was performed using a two-dimensional heterogeneous system (10??1.2 m), which represents an intermediate scale between laboratory and field scales. Tracer tests performed prior to injecting the NAPL provide the baseline response of the heterogeneous porous medium. Two NAPL spill experiments were performed and the entrapped-NAPL saturation distribution measured in detail using a gamma-ray attenuation system. Tracer tests following each of the NAPL spills produced breakthrough curves (BTCs) reflecting the impact of entrapped NAPL on conservative transport. To evaluate significance, the impact of NAPL entrapment on the conservative-tracer breakthrough curves was compared to simulated breakthrough curve variability for different realizations of the heterogeneous distribution. Analysis of the results reveals that the NAPL entrapment has a significant impact on the temporal moments of conservative-tracer breakthrough curves. ?? 2003 Elsevier B.V. All rights reserved.

Travel times, streamflow velocities, and dispersion rates in the Missouri River upstream from Canyon Ferry Lake, Montana

USGS Publications Warehouse

Whiteman, Aroscott

2012-01-01

In 2010, the U.S. Geological Survey, in cooperation with the Montana Department of Environmental Quality, initiated a dye-tracer study to determine travel times, streamflow velocities, and longitudinal dispersion rates for the Missouri River upstream from Canyon Ferry Lake. For this study, rhodamine WT (RWT) dye was injected at two locations, Missouri River Headwaters State Park in early September and Broadwater-Missouri Dam (Broadwater Dam) in late August 2010. Dye concentrations were measured at three sites downstream from each dye-injection location. The study area was a 41.2-mile reach of the Missouri River from Trident, Montana, at the confluence of the Jefferson, Madison, and Gallatin Rivers (Missouri River Headwaters) at river mile 2,319.40 downstream to the U.S. Route 12 Bridge (Townsend Bridge), river mile 2,278.23, near Townsend, Montana. Streamflows were reasonably steady and ranged from 3,070 to 3,700 cubic feet per second. Mean velocities were calculated for each subreach between measurement sites for the leading edge, peak concentration, centroid, and trailing edge at 10 percent of the peak concentration of the dye plume. Calculated velocities for the centroid of the dye plume ranged from 0.80 to 3.02 feet per second within the study reach from Missouri River Headwaters to Townsend Bridge, near Townsend. The mean velocity of the dye plume for the entire study reach, excluding the subreach between the abandoned Milwaukee Railroad bridge at Lombard, Montana (Milwaukee Bridge) and Broadwater-Missouri Dam (Broadwater Dam), was 2.87 feet per second. The velocity of the centroid of the dye plume for the subreach between Milwaukee Bridge and Broadwater Dam (Toston Reservoir) was 0.80 feet per second. The residence time for Toston Reservoir was 8.2 hours during this study. Estimated longitudinal dispersion rates of the dye plume for this study ranged from 0.72 feet per second for the subreach from Milwaukee Bridge to Broadwater Dam to 2.26 feet per second for the subreach from the U.S. Route 287 Bypass Bridge over the Missouri River north of Toston, Montana to Yorks Islands. A relation was determined between travel time of the peak concentration and the time for the dye plume to pass a site (duration of the dye plume). This relation can be used to estimate when the decreasing concentration of a potential contaminant is reduced to 10 percent of its peak concentration for accidental (contaminant or chemical) spills into the upper Missouri River.

Design and Construction of Simple, Nitrogen-Laser-Pumped, Tunable Dye Lasers

ERIC Educational Resources Information Center

Hilborn, Robert C.

1978-01-01

The basic physical principles of dye lasers are discussed and used to analyze the design and operation of tunable dye lasers pumped by pulsed nitrogen lasers. Details of the design and construction of these dye lasers are presented. Some simple demonstration experiments are described. (BB)

A Review of Multidimensional, Multifluid Intermediate-scale Experiments: Flow Behavior, Saturation Imaging, and Tracer Detection and Quantification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oostrom, Mart; Dane, J. H.; Wietsma, Thomas W.

2007-08-01

A review is presented of original multidimensional, intermediate-scale experiments involving non-aqueous phase liquid (NAPL) flow behavior, imaging, and detection/quantification with solute tracers. In a companion paper (Oostrom, M., J.H. Dane, and T.W. Wietsma. 2006. A review of multidimensional, multifluid intermediate-scale experiments: Nonaqueous phase dissolution and enhanced remediation. Vadose Zone Journal 5:570-598) experiments related to aqueous dissolution and enhanced remediation were discussed. The experiments investigating flow behavior include infiltration and redistribution experiments with both light and dense NAPLs in homogeneous and heterogeneous porous medium systems. The techniques used for NAPL saturation mapping for intermediate-scale experiments include photon-attenuation methods such as gammamore » and X-ray techniques, and photographic methods such as the light reflection, light transmission, and multispectral image analysis techniques. Solute tracer methods used for detection and quantification of NAPL in the subsurface are primarily limited to variations of techniques comparing the behavior of conservative and partitioning tracers. Besides a discussion of the experimental efforts, recommendations for future research at this laboratory scale are provided.« less

Power ultrasound-assisted cleaner leather dyeing technique: influence of process parameters.

PubMed

Sivakumar, Venkatasubramanian; Rao, Paruchuri Gangadhar

2004-03-01

The application of power ultrasound to leather processing has a significant role in the concept of "clean technology" for leather production. The effect of power ultrasound in leather dyeing has been compared with dyeing in the absence of ultrasound and conventional drumming. The power ultrasound source used in these experiments was ultrasonic cleaner (150 W and 33 kHz). The effect of various process parameters such as amount of dye offer, temperature, and type of dye has been experimentally found out. The effect of presonication of dye solution as well as leather has been studied. Experiments at ultrasonic bath temperature were carried out to find out the combined thermal as well as stirring effects of ultrasound. Dyeing in the presence of ultrasound affords about 37.5 (1.8 times) difference as increase in % dye exhaustion or about 50% decrease in the time required for dyeing compared to dyeing in the absence of ultrasound for 4% acid red dye. About 29 (1.55 times) increase in % dye exhaustion or 30% reduction in time required for dyeing was observed using ultrasound at stationary condition compared with conventional dynamic drumming conditions. The effect of ultrasound at constant temperature conditions with a control experiment has also been studied. The dye exhaustion increases as the temperature increases (30-60 degrees C) and better results are observed at higher temperature due to the use of ultrasound. Presonication of dye solution or crust leather prior to the dyeing process has no significant improvement in dye exhaustion, suggesting ultrasound effect is realized when it is applied during the dyeing process. The results indicate that 1697 and 1416 ppm of dye can be reduced in the spent liquor due to the use of ultrasound for acid red (for 100 min) and acid black (for 3 h) dyes, respectively, thereby reducing the pollution load in the effluent stream. The color yield of the leather as inferred from the reflectance measurement indicates that dye offer can be halved when ultrasound is employed to promote dyeing. Scanning electron microscopy analysis of the cross section of the dyed leather indicates that fiber structure is not affected due to the use of ultrasound under the given process conditions. The present study clearly demonstrates that ultrasound can be used as a tool to improve the rate of exhaustion of dye, reduce pollution load in the spent effluent liquor, and improve the quality of leather produced. The study also offered provision to employ optimum levels of chemicals and increases percentage exhaustion for a given time, thereby limiting the pollution load in the tannery effluent, which is of great social concern.

A Molecular Reaction Cycle with a Solvatochromic Merocyanine Dye: An Experiment in Photochemistry, Kinetics, and Catalysis.

ERIC Educational Resources Information Center

Abdel-Kader, M. H.; Steiner, U.

1983-01-01

Three experiments using merocyanine M suitable as an integrated laboratory experience for undergraduates are described. Experiments demonstrate: complete molecular cycle composed of photochemical, thermal, and protolytic reaction steps; kinetics of cis-trans isomerization of the dye; and mechanism of base catalysis for thermal isomerization of the…

Application of response surface methodology (RSM) for the removal of methylene blue dye from water by nano zero-valent iron (NZVI).

PubMed

Khosravi, Morteza; Arabi, Simin

In this study, iron zero-valent nanoparticles were synthesized, characterized and studied for removal of methylene blue dye in water solution. The reactions were mathematically described as the function of parameters such as nano zero-valent iron (NZVI) dose, pH, contact time and initial dye concentration, and were modeled by the use of response surface methodology. These experiments were carried out as a central composite design consisting of 30 experiments determined by the 2(4) full factorial designs with eight axial points and six center points. The results revealed that the optimal conditions for dye removal were NZVI dose 0.1-0.9 g/L, pH 3-11, contact time 20-100 s, and initial dye concentration 10-50 mg/L, respectively. Under these optimal values of process parameters, the dye removal efficiency of 92.87% was observed, which very close to the experimental value (92.21%) in batch experiment. In the optimization, R(2) and R(2)adj correlation coefficients for the model were evaluated as 0.96 and 0.93, respectively.

Clean Photothermal Heating and Controlled Release from Near-Infrared Dye Doped Nanoparticles without Oxygen Photosensitization.

PubMed

Guha, Samit; Shaw, Scott K; Spence, Graeme T; Roland, Felicia M; Smith, Bradley D

2015-07-21

The photothermal heating and release properties of biocompatible organic nanoparticles, doped with a near-infrared croconaine (Croc) dye, were compared with analogous nanoparticles doped with the common near-infrared dyes ICG and IR780. Separate formulations of lipid-polymer hybrid nanoparticles and liposomes, each containing Croc dye, absorbed strongly at 808 nm and generated clean laser-induced heating (no production of (1)O2 and no photobleaching of the dye). In contrast, laser-induced heating of nanoparticles containing ICG or IR780 produced reactive (1)O2, leading to bleaching of the dye and also decomposition of coencapsulated payload such as the drug doxorubicin. Croc dye was especially useful as a photothermal agent for laser-controlled release of chemically sensitive payload from nanoparticles. Solution state experiments demonstrated repetitive fractional release of water-soluble fluorescent dye from the interior of thermosensitive liposomes. Additional experiments used a focused laser beam to control leakage from immobilized liposomes with very high spatial and temporal precision. The results indicate that fractional photothermal leakage from nanoparticles doped with Croc dye is a promising method for a range of controlled release applications.

Clean Photothermal Heating and Controlled Release From Near Infrared Dye Doped Nanoparticles Without Oxygen Photosensitization

PubMed Central

Guha, Samit; Shaw, Scott K.; Spence, Graeme T.; Roland, Felicia M.; Smith, Bradley D.

2015-01-01

The photothermal heating and release properties of biocompatible organic nanoparticles, doped with a near-infrared croconaine (Croc) dye, were compared with analogous nanoparticles doped with the common near-infrared dyes ICG and IR780. Separate formulations of lipid-polymer-hybrid nanoparticles and liposomes, each containing Croc dye, absorbed strongly at 808 nm and generated clean laser-induced heating (no production of 1O2 and no photobleaching of the dye). In contrast, laser-induced heating of nanoparticles containing ICG or IR780 produced reactive 1O2 leading to bleaching of the dye and also decomposition of co-encapsulated payload such as the drug Doxorubicin. Croc dye was especially useful as a photothermal agent for laser controlled release of chemically sensitive payload from nanoparticles. Solution state experiments demonstrated repetitive fractional release of water soluble fluorescent dye from the interior of thermosensitive liposomes. Additional experiments used a focused laser beam to control leakage from immobilized liposomes with very high spatial and temporal precision. The results indicate that fractional photothermal leakage from nanoparticles doped with Croc dye is a promising method for a range of controlled release applications. PMID:26149326

Multispectral Fluorescence Imaging During Robot-assisted Laparoscopic Sentinel Node Biopsy: A First Step Towards a Fluorescence-based Anatomic Roadmap.

PubMed

van den Berg, Nynke S; Buckle, Tessa; KleinJan, Gijs H; van der Poel, Henk G; van Leeuwen, Fijs W B

2017-07-01

During (robot-assisted) sentinel node (SN) biopsy procedures, intraoperative fluorescence imaging can be used to enhance radioguided SN excision. For this combined pre- and intraoperative SN identification was realized using the hybrid SN tracer, indocyanine green- 99m Tc-nanocolloid. Combining this dedicated SN tracer with a lymphangiographic tracer such as fluorescein may further enhance the accuracy of SN biopsy. Clinical evaluation of a multispectral fluorescence guided surgery approach using the dedicated SN tracer ICG- 99m Tc-nanocolloid, the lymphangiographic tracer fluorescein, and a commercially available fluorescence laparoscope. Pilot study in ten patients with prostate cancer. Following ICG- 99m Tc-nanocolloid administration and preoperative lymphoscintigraphy and single-photon emission computed tomograpy imaging, the number and location of SNs were determined. Fluorescein was injected intraprostatically immediately after the patient was anesthetized. A multispectral fluorescence laparoscope was used intraoperatively to identify both fluorescent signatures. Multispectral fluorescence imaging during robot-assisted radical prostatectomy with extended pelvic lymph node dissection and SN biopsy. (1) Number and location of preoperatively identified SNs. (2) Number and location of SNs intraoperatively identified via ICG- 99m Tc-nanocolloid imaging. (3) Rate of intraoperative lymphatic duct identification via fluorescein imaging. (4) Tumor status of excised (sentinel) lymph node(s). (5) Postoperative complications and follow-up. Near-infrared fluorescence imaging of ICG- 99m Tc-nanocolloid visualized 85.3% of the SNs. In 8/10 patients, fluorescein imaging allowed bright and accurate identification of lymphatic ducts, although higher background staining and tracer washout were observed. The main limitation is the small patient population. Our findings indicate that a lymphangiographic tracer can provide additional information during SN biopsy based on ICG- 99m Tc-nanocolloid. The study suggests that multispectral fluorescence image-guided surgery is clinically feasible. We evaluated the concept of surgical fluorescence guidance using differently colored dyes that visualize complementary features. In the future this concept may provide better guidance towards diseased tissue while sparing healthy tissue, and could thus improve functional and oncologic outcomes. Copyright © 2016 European Association of Urology. Published by Elsevier B.V. All rights reserved.

Adsorption of a Textile Dye on Commercial Activated Carbon: A Simple Experiment to Explore the Role of Surface Chemistry and Ionic Strength

ERIC Educational Resources Information Center

Martins, Angela; Nunes, Nelson

2015-01-01

In this study, an adsorption experiment is proposed using commercial activated carbon as adsorbent and a textile azo dye, Mordant Blue-9, as adsorbate. The surface chemistry of the activated carbon is changed through a simple oxidation treatment and the ionic strength of the dye solution is also modified, simulating distinct conditions of water…

Chemical Tool Peer Review Summary.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cashion, Avery Ted; Cieslewski, Grzegorz

Chemical tracers are commonly used to characterize fracture networks and to determine the connectivity between the injection and production wells. Currently, most tracer experiments involve injecting the tracer at the injection well, manually collecting liquid samples at the wellhead of the production well, and sending the samples off for laboratory analysis. While this method provides accurate tracer concentration data, it does not provide information regarding the location of the fractures conducting the tracer between wellbores. The goal of this project is to develop chemical sensors and design a prototype tool to help understand the fracture properties of a geothermal reservoirmore » by monitoring tracer concentrations along the depth of the well. The sensors will be able to detect certain species of the ionic tracers (mainly iodide) and pH in-situ during the tracer experiment. The proposed high-temperature (HT) tool will house the chemical sensors as well as a standard logging sensor package of pressure, temperature, and flow sensors in order to provide additional information on the state of the geothermal reservoir. The sensors and the tool will be able to survive extended deployments at temperatures up to 225 °C and high pressures to provide real-time temporal and spatial feedback of tracer concentration. Data collected from this tool will allow for the real-time identification of the fractures conducting chemical tracers between wellbores along with the pH of the reservoir fluid at various depths.« less

Resazurin as a Proxy for Estimating Stream Respiration

NASA Astrophysics Data System (ADS)

Gonzalez Pinzon, R. A.; Haggerty, R.; Argerich, A.; Briggs, M.; Lautz, L. K.; Lemke, D.; Hare, D. K.

2010-12-01

Hydrologic retention in stream ecosystems favors the reactions of solutes and nutrients in metabolically active transient storage (MATS) zones. These zones are hot spots where metabolic activity is expected to contribute significantly to ecosystem respiration. We compare the results of a series of coinjections of resazurin (Raz) as a redox sensitive tracer, and NaCl as a conservative tracer to investigate the function of MATS zones. Raz is a dye that undergoes an irreversible reduction to resorufin (Rru) when exposed to aerobic respiration. To characterize the transformation of Raz we measured the BTC of the tracers at the boundary conditions, and during plateau concentrations we sampled the longitudinal profile of surface water. We also used the two-station diel technique to quantify gross primary production (GPP) and community respiration (CR) within the reaches. Injections have been performed in streams with different morphology, streambed composition, and riparian vegetation in Oregon-USA (WS 1 and WS 3 in the HJ Andrews Forest LTER, and Drift Creek), Spain (Riera de Santa Fe del Montseny, Catalonia) and Wyoming-USA (Cherry Creek). The results support the idea that under different ranges of community respiration, the transformation of Raz to Rru is a proxy for quantifying MATS, characterizing spatial heterogeneity in respiration rates, and ultimately, could be used to estimate ecosystem respiration in environments where direct measurement is challenging.

MULTISPECIES REACTIVE TRACER TEST IN A SAND AND GRAVEL AQUIFER, CAPE COD, MASSACHUSETTS: PART 2: TRANSPORT OF CHROMIUM (VI) AND LEAD-, COPPER-, AND ZINC-EDTA TRACERS

EPA Science Inventory

This report discusses the transport of a group of reactive tracers over the course of a large-scale, natural gradient tracer test conducted at the USGS Cape Cod Toxic Substances Hydrology Research site, near Falmouth, Massachusetts. The overall objectives of the experiment were ...

Modeling Polymer Stabilized Nano-scale Zero Valent Iron Transport Experiments in Porous Media to Understand the Transport Behavior

NASA Astrophysics Data System (ADS)

Mondal, P.; Krol, M.; Sleep, B. E.

2015-12-01

A wide variety of groundwater contaminants can be treated with nano-scale zero valent iron (nZVI). However, delivery of nZVI in the subsurface to the treatment zones is challenging as the bare nZVI particles have a higher tendency to agglomerate. The subsurface mobility of nZVI can be enhanced by stabilizing nZVI with polymer, such as carboxymethyl cellulose (CMC). In this study, numerical simulations were conducted to evaluate CMC stabilized nZVI transport behavior in porous media. The numerical simulations were based on a set of laboratory-scale transport experiments that were conducted in a two-dimensional water-saturated glass-walled sandbox (length - 55 cm; height - 45 cm; width - 1.4 cm), uniformly packed with silica sand. In the transport experiments: CMC stabilized nZVI and a non-reactive dye tracer Lissamine Green B (LGB) were used; water specific discharge and CMC concentration were varied; movements of LGB, and CMC-nZVI in the sandbox were tracked using a camera, a light source and a dark box. The concentrations of LGB, CMC, and CMC-nZVI at the sandbox outlet were analyzed. A 2D multiphase flow and transport model was applied to simulate experimental results. The images from LGB dye transport experiments were used to determine the pore water velocities and media permeabilities in various layers in the sand box. These permeability values were used in the subsequent simulations of CMC-nZVI transport. The 2D compositional simulator, modified to include colloid filtration theory (CFT), treated CMC as a solute and nZVI as a colloid. The simulator included composition dependent viscosity to account for CMC injection and mixing, and attachment efficiency as a fitting parameter for nZVI transport modeling. In the experiments, LGB and CMC recoveries were greater than 95%; however, CMC residence time was significantly higher than the LGB residence time and the higher CMC concentration caused higher pressure drops in the sandbox. The nZVI recovery was lower than 40% in all experiments. The simulation results were found to be in good agreement with the experimental results, implying that the compositional simulator including CFT-modified transport equations could be utilized for the estimation of CMC-stabilized nZVI transport in porous media and design of field scale implementations of CMC-nZVI for remediation.

Spectrally resolved visualization of fluorescent dyes permeating into skin

NASA Astrophysics Data System (ADS)

Maeder, Ulf; Bergmann, Thorsten; Beer, Sebastian; Burg, Jan Michael; Schmidts, Thomas; Runkel, Frank; Fiebich, Martin

2012-03-01

We present a spectrally resolved confocal imaging approach to qualitatively asses the overall uptake and the penetration depth of fluorescent dyes into biological tissue. We use a confocal microscope with a spectral resolution of 5 nm to measure porcine skin tissue after performing a Franz-Diffusion experiment with a submicron emulsion enriched with the fluorescent dye Nile Red. The evaluation uses linear unmixing of the dye and the tissue autofluorescence spectra. The results are combined with a manual segmentation of the skin's epidermis and dermis layers to assess the penetration behavior additionally to the overall uptake. The diffusion experiments, performed for 3h and 24h, show a 3-fold increased dye uptake in the epidermis and dermis for the 24h samples. As the method is based on spectral information it does not face the problem of superimposed dye and tissue spectra and therefore is more precise compared to intensity based evaluation methods.

Sentinel lymph node detection in patients with early cervical cancer.

PubMed

Acharya, B C; Jihong, L

2009-01-01

Lymph node status is the most important independent prognostic factor in early stage cervical cancer. Intraoperative lymphatic mapping and sentinel lymph node detection have been increasingly evaluated in the treatment of a variety of solid tumors, particularly breast cancer and cutaneous melanoma. This study evaluated the feasibility of these procedures in patients undergoing radical hysterectomy with pelvic lymphadenectomy for early cervical cancer. A total of 30 patients with histologically diagnosed FIGO stage IA to IIA cervical cancer were enrolled to this study. They were scheduled to undergo radical abdominal hysterectomy and pelvic lymphadenectomy after injecting patent blue dye in cervix. A total of 60 SLNs (mean 2.5) were detected in 24 patients with detection rate of 80%. Bilateral SLNs were detected in 70.1% of cases. SLNs were identified in obturator and external iliac areas in 50% and 31.7%, respectively; no SLNs were discovered in the common iliac region. Seven patients (23.3%) had lymph node metastases; one of these had false negative SLN.The false negative rate and negative predictive value were 14.3% and 94.4%, respectively. SLN detection procedure with blue dye technique is a feasible procedure in cervical cancer. Patent blue dye is cheap, safe and effective tracer to detect sentinel node in carcinoma of cervix.

Dyes, Fibers, and Paper: A Botany Lab Exercise for Non-Biology Majors

ERIC Educational Resources Information Center

Egan, Todd P.; Meekins, J. Forrest; Maluso, Diane

2004-01-01

This laboratory exercise affords students a hands-on experience learning about traditional dyes, fiber strength, and paper making. It is economical, simple to prepare, provides satisfactory results, and is student friendly. Dyes were extracted from plant leaves, stems, roots, and fruits. Hard-boiled eggs were place in the dyes for 15 minutes to…

Determination of solid mass fraction in partially frozen hydrocarbon fuels

NASA Technical Reports Server (NTRS)

Cotterell, E. M.; Mossadegh, R.; Bruce, A. J.; Moynihan, C. T.

1986-01-01

Filtration procedures alone are insufficient to determine the amounts of crystalline solid in a partially frozen hydrocarbon distillate fraction. This is due to the nature of the solidification process by which a large amount of liquid becomes entrapped within an interconnected crystalline structure. A technique has been developed to supplement filtration methods with an independent determination of the amount of liquid in the precipitate thereby revealing the actual value of mass percent crystalline solid, %S. A non-crystallizing dye is injected into the fuel and used as a tracer during the filtration. The relative concentrations of the dye in the filtrate and precipitate fractions is subsequently detected by a spectrophotometric comparison. The filtration apparatus was assembled so that the temperature of the sample is recorded immediately above the filter. Also, a second method of calculation has been established which allows significant reduction in test time while retaining acceptable accuracy of results. Data have been obtained for eight different kerosene range hydrocarbon fuels.

Isotope dilution technique for quantitative analysis of endogenous trace element species in biological systems

NASA Astrophysics Data System (ADS)

Schaumlöffel, Dirk; Lobinski, Ryszard

2005-04-01

The aim of this study was to develop an inductively coupled plasma mass spectrometry (ICPMS) method for the determination of enriched species-specific mercury tracers at ng L-1 levels (ppt) in zooplankton and aquatic samples from biological tracer experiments. Applying a cold vapor sector field ICPMS method a high sensitivity was obtained, i.e., 106 cps for 1 [mu]g L-1 of natural mercury measured on 202Hg+, which in turn enabled the measurement of mercury isotope ratios with a 0.6-1.4%R.S.D. precision for a 50 ng L-1 standard. This method was used to quantify CH3201Hg+ and 200Hg2+ tracers in zooplankton from a biological tracer experiment with the aim of investigating the effects of algal density and zooplankton density on mercury bioaccumulation in zooplankton in a fresh water system. For quantification purposes a known amount of 199Hg+ was added to the zooplankton samples before digestion. The digested samples were analyzed and the resulting ICPMS spectra split into four spectra one for each of the four sources of mercury present in the sample (CH3201Hg+, 200Hg2+, 199Hg2+ and natural mercury) using algebraic de-convoluting. The CH3201Hg+ and 200Hg2+ tracers were quantified using an isotope dilution approach with the added 199Hg+. Detection limits were 0.6 and 0.2 ng L-1 for 200Hg+ and CH3201Hg+, respectively. The coefficient of variation on the tracer determinations was approximately 18% CV estimated from the analysis of real samples with tracer concentrations in the <0.1-100 ng L-1 range. The developed method was successfully applied for the determination of species-specific mercury tracers in zooplankton samples from a biological tracer experiment.

Determination of the orientation of fluorescent labels relative to myosin S1 in solution from time-resolved fluorescence anisotropy experiments

NASA Astrophysics Data System (ADS)

van der Heide, Uulke A.; Gerritsen, Hans C.; Trayer, Ian P.; Levine, Yehudi K.

1992-04-01

The time-resolved fluorescence anisotropy of myosin S1 covalently labeled with Eosin-5- maleimide and 1,5-I-AEDANS was measured in solution. Each probe was specifically attached at one SH-group on the S1. The two most reactive SH sites on the heavy chain of the myosin S1 were used. The fluorescence anisotropy was measured at different excitation wavelengths. In this way, several absorption moments were utilized, each having a distinct orientation in the frame of the dye. The orientations of the transition moments in the dyes were determined in a separate experiment using an angle resolved fluorescence depolarization experiment on dyes embedded in stretched matrices of PVA polymers. The anisotropy decay curves exhibit fast (<3 ns) and slow (> 100 ns) components. The slow decay components reflect the motion of the large protein molecules. The fast anisotropy decay are attributed to a fast, but restricted, motion of the bound dye relative to the protein as experiments on free dyes in solution reveal subnanosecond anisotropy decays. The anisotropy decays have been analyzed in terms of a model which describes the restricted motion of the dye molecule relative to the protein and the overall rotation of the dye-protein complex in solution. An important element in the model is the incorporation of the orientational distribution of the dye relative to the protein. The observed anisotropy decays were analyzed using a global target approach in which the experimental data obtained at different excitation wavelengths are fitted simultaneously to the theoretical model. It is important to note that the orientational distribution of the dye relative to the protein, as well as the rotational correlation times of the motions for a dye attached to a given binding site, are independent of the excitation wavelength used. This leads to a reduction in the number of independent parameters optimized by the nonlinear least squares procedure. The orientational distribution of the dye relative to the protein obtained in this way is particularly useful for the interpretation of fluorescence depolarization data obtained from labeled muscle fibers. Indeed, knowledge of the distribution function of a dye attached to a binding site of the S1 protein is a prerequisite for a probe-independent determination of the orientational distribution of the S1 proteins themselves in the muscle fiber.

FLORIDA TOWER FOOTPRINT EXPERIMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

WATSON,T.B.; DIETZ, R.N.; WILKE, R.

2007-01-01

The Florida Footprint experiments were a series of field programs in which perfluorocarbon tracers were released in different configurations centered on a flux tower to generate a data set that can be used to test transport and dispersion models. These models are used to determine the sources of the CO{sub 2} that cause the fluxes measured at eddy covariance towers. Experiments were conducted in a managed slash pine forest, 10 km northeast of Gainesville, Florida, in 2002, 2004, and 2006 and in atmospheric conditions that ranged from well mixed, to very stable, including the transition period between convective conditions atmore » midday to stable conditions after sun set. There were a total of 15 experiments. The characteristics of the PFTs, details of sampling and analysis methods, quality control measures, and analytical statistics including confidence limits are presented. Details of the field programs including tracer release rates, tracer source configurations, and configuration of the samplers are discussed. The result of this experiment is a high quality, well documented tracer and meteorological data set that can be used to improve and validate canopy dispersion models.« less

Ground water pollution by roof runoff infiltration evidenced with multi-tracer experiments.

PubMed

Ammann, Adrian A; Hoehn, Eduard; Koch, Sabine

2003-03-01

The infiltration of urban roof runoff into well permeable subsurface material may have adverse effects on the ground water quality and endanger drinking water resources. Precipitation water from three different roofs of an industrial complex was channelled to a pit and infiltrated into a perialpine glaciofluvial gravel-and-sand aquifer. A shaft was constructed at the bottom of the pit and equipped with an array of TDR probes, lysimeters and suction cups that allowed measuring and sampling soil water at different depths. A fast infiltration flow was observed during natural rainfall events and during artificial infiltration experiments. For a better understanding of the behaviour of contaminants, experiments were conducted with cocktails of compounds of different reactivity (ammonium, strontium, atratone) and of non-reactive tracers (uranine, bromide, naphthionate), which represent different classes of pollutants. The experiment identified cation exchange reactions influencing the composition of the infiltrating water. These processes occurred under preferential flow conditions in macropores of the material. Measuring concentration changes under the controlled inflow of tracer experiments, the pollution potential was found to be high. Non-reactive tracers exhibited fast breakthrough and little sorption.

An airborne perfluorocarbon tracer system and its first application for a Lagrangian experiment

NASA Astrophysics Data System (ADS)

Ren, Y.; Baumann, R.; Schlager, H.

2015-01-01

A perfluorocarbon tracer system (PERTRAS), specifically designed for Lagrangian aircraft experiments, has been developed by the Deutsches Zentrum für Luft- und Raumfahrt (German Aerospace Center, DLR). It consists of three main parts: a tracer release unit (RU), an adsorption tube sampler (ATS), and a tracer analytical system. The RU was designed for airborne tracer release experiments; meanwhile, it can be used on various platforms for different experimental purposes (here research vessel). PERTRAS was for the first time applied in the field campaign Stratospheric ozone: Halogen Impacts in a Varying Atmosphere (SHIVA) in November 2011. An amount of 8.8 kg perfluoromethylcyclopentane (PMCP) was released aboard the research vessel Sonne (RV Sonne) near the operational site of this campaign, Miri, Malaysia, on 21 November. The tracer samples collected using the ATS onboard the DLR research aircraft Falcon were analyzed in the laboratory using a thermal desorber-gas chromatography-mass spectrometry (TD-GC-MS) system. Guided by forecasts calculated with the Lagrangian model Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT), 64 tracer samples were collected onboard the Falcon approximately 5 and 25 h after the release, mostly with a time resolution of 1 min. Enhanced PMCP concentrations relative to ambient PMCP background values (mean: 6.62 fmol mol-1) were detected during three intersects of the fresh tracer plume (age 5 h), with a maximum value of 301.33 fmol mol-1. This indicates that the fresh tracer plume was successfully intercepted at the forecast position. During the second flight, 25 h after the release, the center of tracer plume was not detected by the sampling system due to a faster advection of the plume than forecast. The newly developed PERTRAS system has been successfully deployed for the first time. The instrumental setup and comparisons between the measurements and HYSPLIT simulations are presented in this study.

An airborne perfluorocarbon tracer system and its first application for a Lagrangian experiment

NASA Astrophysics Data System (ADS)

Ren, Y.; Baumann, R.; Schlager, H.

2014-07-01

A perfluorocarbon tracer system (PERTRAS), specifically designed for Lagrangian aircraft experiments, has been developed by the Deutsches Zentrum für Luft- und Raumfahrt (German Aerospace Center, DLR). It consists of three main parts: a tracer release unit (RU), an adsorption tube sampler (ATS) and a tracer analytical system. The RU was designed for airborne tracer release experiments; meanwhile, it can be used on various platforms for different experimental purpose (here research vessel). PERTRAS was for the first time applied in the field campaign Stratospheric ozone: halogen Impacts in a Varying Atmosphere (SHIVA) in November 2011. An amount of 8.8 kg perfluoromethylcyclopentane (PMCP) was released aboard the research vessel Sonne (RV Sonne) near the operational site of this campaign, Miri, Malaysia, on 21 November. The tracer samples collected using the ATS on board the DLR research aircraft Falcon were analyzed in the laboratory using a thermal desorber/gas chromatography/mass spectrometry (TD/GC/MS) system. Guided by forecasts calculated with the Lagrangian model, Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT), 64 tracer samples were collected onboard the Falcon approximately 5 and 25 h after the release, respectively, mostly with a time resolution of 1 min. Enhanced PMCP concentrations relative to ambient PMCP background values (mean: 6.62 fmol mol-1) were detected during three intersects of the fresh tracer plume (age 5 h), with a maximum value of 301.33 fmol mol-1. This indicates that the fresh tracer plume was successfully intercepted at the forecasted position. During the second flight, 25 h after the release, the center of tracer plume was not detected by the sampling system due to a faster advection of the plume than forecasted. The newly developed PERTRAS system has been successfully deployed for the first time. The instrumental set-up and comparisons between the measurements and HYSPLIT simulations are presented in this study.

Biodegradation of the surfactant linear alkylbenzenesulfonate in sewage- contaminated groundwater: A comparison of column experiments and field tracer tests

USGS Publications Warehouse

Krueger, C.J.; Radakovich, K.M.; Sawyer, T.E.; Barber, L.B.; Smith, R.L.; Field, J.A.

1998-01-01

Transport and biodegradation of linear alkylbenzenesulfonate (LAS) in sewage-contaminated groundwater were investigated for a range of dissolved oxygen concentrations. Both laboratory column and an 80-day continuous injection tracer test field experiments were conducted. The rates of LAS biodegradation increased with increasing dissolved oxygen concentrations and indicated the preferential biodegradation of the longer alkyl chain LAS homologues (i.e., C12 and C13) and external isomers (i.e., 2-and 3- phenyl). However, for similar dissolved oxygen concentrations, mass removal rates for LAS generally were 2-3 times greater in laboratory column experiments than in the field tracer test. Under low oxygen conditions (<1 mg/L) only a fraction of the LAS mixture biodegraded in both laboratory and field experiments. Biodegradation rate constants for the continuous injection field test (0.002-0.08 day-1) were comparable to those estimated for a 3-h injection (pulsed) tracer test conducted under similar biogeochemical conditions, indicating that increasing the exposure time of aquifer sediments to LAS did not increase biodegradation rates.Transport and biodegradation of linear alkylbenzenesulfonate (LAS) in sewage-contaminated groundwater were investigated for a range of dissolved oxygen concentrations. Both laboratory column and an 80-day continuous injection tracer test field experiments were conducted. The rates of LAS biodegradation increased with increasing dissolved oxygen concentrations and indicated the preferential biodegradation of the longer alkyl chain LAS homologues (i.e., C12 and C13) and external isomers (i.e., 2- and 3-phenyl). However, for similar dissolved oxygen concentrations, mass removal rates for LAS generally were 2-3 times greater in laboratory column experiments than in the field tracer test. Under low oxygen conditions (<1 mg/L) only a fraction of the LAS mixture biodegraded in both laboratory and field experiments. Biodegradation rate constants for the continuous injection field test (0.002-0.08 day-1) were comparable to those estimated for a 3-h injection (pulsed) tracer test conducted under similar biogeochemical conditions, indicating that increasing the exposure time of aquifer sediments to LAS did not increase biodegradation rates.

Deuterium used as artificial tracer in column studies under saturated water flow conditions

NASA Astrophysics Data System (ADS)

Koeniger, P.; Geiges, M.; Leibundgut, Ch.

2003-04-01

In contrast to numerous investigations using deuterium as an environmental tracer, hydrological investigations with deuterium-labelled water are rather rare. Currently applications in groundwater studies are restricted due to increasing costs of spiking large water quantities but an application as intelligent tracer might be of advantage especially in combination with other tracers and under distinct environmental conditions. Therefore deuterium was applied as artificial tracer in column experiments that are well proved as a tool to characterise tracer behaviour in recent studies. Deuterium was tested in comparison to the more familiar conservative tracer fluorescein. Varying experimental conditions, e.g. column length (0.5, 1.0, 1.5 m), initial tracer concentration (0.01, 0.02, 0.2 mg) and flow velocity (1.5 to 6.0 m/d) were used to investigate tracer behaviour under saturated water flow conditions. Deuterium was analysed using an H/Device with chrome reduction connected to an isotope ratio mass spectrometer and expressed in relative concentrations [per mill V-SMOW]. Theoretical tracer breakthrough curves were calculated using a one dimensional dispersion model. The results indicate higher mean transport velocities and smaller dispersion for deuterium in all experiments. Due to different molecule properties that also determine the interaction of soil substrate and tracer, deuterium indicates a more conservative transport behaviour. Deuterium is non-toxic, completely soluble, chemically and biologically stable and not subject to light-influenced decay. Furthermore, it shows promise for investigations of water flow in the unsaturated zone, and of interactions of water in soil-plant-atmosphere systems. A further discussion of problems, together with possibilities for applying deuterium as an artificial tracer, will be presented.

Response surface methodological approach for the decolorization of simulated dye effluent using Aspergillus fumigatus fresenius.

PubMed

Sharma, Praveen; Singh, Lakhvinder; Dilbaghi, Neeraj

2009-01-30

The aim of our research was to study, effect of temperature, pH and initial dye concentration on decolorization of diazo dye Acid Red 151 (AR 151) from simulated dye solution using a fungal isolate Aspergillus fumigatus fresenius have been investigated. The central composite design matrix and response surface methodology (RSM) have been applied to design the experiments to evaluate the interactive effects of three most important operating variables: temperature (25-35 degrees C), pH (4.0-7.0), and initial dye concentration (100-200 mg/L) on the biodegradation of AR 151. The total 20 experiments were conducted in the present study towards the construction of a quadratic model. Very high regression coefficient between the variables and the response (R(2)=0.9934) indicated excellent evaluation of experimental data by second-order polynomial regression model. The RSM indicated that initial dye concentration of 150 mg/L, pH 5.5 and a temperature of 30 degrees C were optimal for maximum % decolorization of AR 151 in simulated dye solution, and 84.8% decolorization of AR 151 was observed at optimum growth conditions.

Flow visualization in superfluid helium-4 using He2 molecular tracers

NASA Astrophysics Data System (ADS)

Guo, Wei

Flow visualization in superfluid helium is challenging, yet crucial for attaining a detailed understanding of quantum turbulence. Two problems have impeded progress: finding and introducing suitable tracers that are small yet visible; and unambiguous interpretation of the tracer motion. We show that metastable He2 triplet molecules are outstanding tracers compared with other particles used in helium. These molecular tracers have small size and relatively simple behavior in superfluid helium: they follow the normal fluid motion at above 1 K and will bind to quantized vortex lines below about 0.6 K. A laser-induced fluorescence technique has been developed for imaging the He2 tracers. We will present our recent experimental work on studying the normal-fluid motion by tracking thin lines of He2 tracers created via femtosecond laser-field ionization in helium. We will also discuss a newly launched experiment on visualizing vortex lines in a magnetically levitated superfluid helium drop by imaging the He2 tracers trapped on the vortex cores. This experiment will enable unprecedented insight into the behavior of a rotating superfluid drop and will untangle several key issues in quantum turbulence research. We acknowledge the support from the National Science Foundation under Grant No. DMR-1507386 and the US Department of Energy under Grant No. DE-FG02 96ER40952.

Adsorption Properties of p -Methyl Red Monomeric-to-Pentameric Dye Aggregates on Anatase (101) Titania Surfaces: First-Principles Calculations of Dye/TiO 2 Photoanode Interfaces for Dye-Sensitized Solar Cells

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Lei; Cole, Jacqueline M.

2014-08-29

The optical and electronic properties of dye aggregates of p-methyl red on a TiO2 anatase (101) surface were modeled as a function of aggregation order (monomer to pentameric dye) via first principles calculations. A progressive red-shifting and intensity increase toward the visible region in UV/vis absorption spectra is observed from monomeric-to-tetrameric dyes, with each molecule in a given aggregate binding to one of the four possible TiO2 (101) adsorption sites. The pentamer exhibits a blue-shifted peak wave- length in the UV/vis absorption spectra and less absorption intensity in the visible region in comparison; a corresponding manifestation of H-aggregation occurs sincemore » one of these five molecules cannot occupy an adsorption site. This finding is consistent with experiment. Calculated density of states (DOS) and partial DOS spectra reveal similar dye…TiO2 nanocomposite conduction band characteristics but different valence band features. Associated molecular orbital distributions reveal dye-to-TiO2 interfacial charge transfer in all five differing aggregate orders; meanwhile, the level of intramolecular charge transfer in the dye becomes progressively localized around its azo- and electron-donating groups, up to the tetrameric dye/TiO2 species. Dye adsorption energies and dye coverage levels are calculated and compared with experiment. Overall, the findings of this case study serve to aid the molecular design of azo dyes towards better performing DSSC devices wherein they are incorporated. In addition, they provide a helpful example reference for understanding the effects of dye aggregation on the adsorbate…TiO2 interfacial optical and electronic properties.« less

A new tracer‐density criterion for heterogeneous porous media

USGS Publications Warehouse

Barth, Gilbert R.; Illangasekare, Tissa H.; Hill, Mary C.; Rajaram, Harihar

2001-01-01

Tracer experiments provide information about aquifer material properties vital for accurate site characterization. Unfortunately, density‐induced sinking can distort tracer movement, leading to an inaccurate assessment of material properties. Yet existing criteria for selecting appropriate tracer concentrations are based on analysis of homogeneous media instead of media with heterogeneities typical of field sites. This work introduces a hydraulic‐gradient correction for heterogeneous media and applies it to a criterion previously used to indicate density‐induced instabilities in homogeneous media. The modified criterion was tested using a series of two‐dimensional heterogeneous intermediate‐scale tracer experiments and data from several detailed field tracer tests. The intermediate‐scale experimental facility (10.0×1.2×0.06 m) included both homogeneous and heterogeneous (σln k2 = 1.22) zones. The field tracer tests were less heterogeneous (0.24 < σln k2 < 0.37), but measurements were sufficient to detect density‐induced sinking. Evaluation of the modified criterion using the experiments and field tests demonstrates that the new criterion appears to account for the change in density‐induced sinking due to heterogeneity. The criterion demonstrates the importance of accounting for heterogeneity to predict density‐induced sinking and differences in the onset of density‐induced sinking in two‐ and three‐dimensional systems.

ATMOSPHERIC TRACER EXPERIMENTS IN A DEEP NARROW VALLEY

EPA Science Inventory

A set of three atmospheric tracer experiments was conducted in the Brush Creek Valley of western Colorado in the summer of 1982 as part of the U.S. Environmental Protection Agency Green River Ambient Model Assessment (GRAMA) program in conjunction with the U.S. Department of Ener...

Hydrophobic fluorescent probes introduce artifacts into single molecule tracking experiments due to non-specific binding.

PubMed

Zanetti-Domingues, Laura C; Tynan, Christopher J; Rolfe, Daniel J; Clarke, David T; Martin-Fernandez, Marisa

2013-01-01

Single-molecule techniques are powerful tools to investigate the structure and dynamics of macromolecular complexes; however, data quality can suffer because of weak specific signal, background noise and dye bleaching and blinking. It is less well-known, but equally important, that non-specific binding of probe to substrates results in a large number of immobile fluorescent molecules, introducing significant artifacts in live cell experiments. Following from our previous work in which we investigated glass coating substrates and demonstrated that the main contribution to this non-specific probe adhesion comes from the dye, we carried out a systematic investigation of how different dye chemistries influence the behaviour of spectrally similar fluorescent probes. Single-molecule brightness, bleaching and probe mobility on the surface of live breast cancer cells cultured on a non-adhesive substrate were assessed for anti-EGFR affibody conjugates with 14 different dyes from 5 different manufacturers, belonging to 3 spectrally homogeneous bands (491 nm, 561 nm and 638 nm laser lines excitation). Our results indicate that, as well as influencing their photophysical properties, dye chemistry has a strong influence on the propensity of dye-protein conjugates to adhere non-specifically to the substrate. In particular, hydrophobicity has a strong influence on interactions with the substrate, with hydrophobic dyes showing much greater levels of binding. Crucially, high levels of non-specific substrate binding result in calculated diffusion coefficients significantly lower than the true values. We conclude that the physic-chemical properties of the dyes should be considered carefully when planning single-molecule experiments. Favourable dye characteristics such as photostability and brightness can be offset by the propensity of a conjugate for non-specific adhesion.

Hydrophobic Fluorescent Probes Introduce Artifacts into Single Molecule Tracking Experiments Due to Non-Specific Binding

PubMed Central

Rolfe, Daniel J.; Clarke, David T.; Martin-Fernandez, Marisa

2013-01-01

Single-molecule techniques are powerful tools to investigate the structure and dynamics of macromolecular complexes; however, data quality can suffer because of weak specific signal, background noise and dye bleaching and blinking. It is less well-known, but equally important, that non-specific binding of probe to substrates results in a large number of immobile fluorescent molecules, introducing significant artifacts in live cell experiments. Following from our previous work in which we investigated glass coating substrates and demonstrated that the main contribution to this non-specific probe adhesion comes from the dye, we carried out a systematic investigation of how different dye chemistries influence the behaviour of spectrally similar fluorescent probes. Single-molecule brightness, bleaching and probe mobility on the surface of live breast cancer cells cultured on a non-adhesive substrate were assessed for anti-EGFR affibody conjugates with 14 different dyes from 5 different manufacturers, belonging to 3 spectrally homogeneous bands (491 nm, 561 nm and 638 nm laser lines excitation). Our results indicate that, as well as influencing their photophysical properties, dye chemistry has a strong influence on the propensity of dye-protein conjugates to adhere non-specifically to the substrate. In particular, hydrophobicity has a strong influence on interactions with the substrate, with hydrophobic dyes showing much greater levels of binding. Crucially, high levels of non-specific substrate binding result in calculated diffusion coefficients significantly lower than the true values. We conclude that the physic-chemical properties of the dyes should be considered carefully when planning single-molecule experiments. Favourable dye characteristics such as photostability and brightness can be offset by the propensity of a conjugate for non-specific adhesion. PMID:24066121

Evaluation of a Mesoscale Atmospheric Dispersion Modeling System with Observations from the 1980 Great Plains Mesoscale Tracer Field Experiment. Part I: Datasets and Meteorological Simulations.

NASA Astrophysics Data System (ADS)

Moran, Michael D.; Pielke, Roger A.

1996-03-01

The Colorado State University mesoscale atmospheric dispersion (MAD) numerical modeling system, which consists of a prognostic mesoscale meteorological model coupled to a mesoscale Lagrangian particle dispersion model, has been used to simulate the transport and diffusion of a perfluorocarbon tracer-gas cloud for one afternoon surface release during the July 1980 Great Plains mesoscale tracer field experiment. Ground-level concentration (GLC) measurements taken along arcs of samplers 100 and 600 km downwind of the release site at Norman, Oklahoma, up to three days after the tracer release were available for comparison. Quantitative measures of a number of significant dispersion characteristics obtained from analysis of the observed tracer cloud's moving GLC `footprint' have been used to evaluate the modeling system's skill in simulating this MAD case.MAD is more dependent upon the spatial and temporal structure of the transport wind field than is short-range atmospheric dispersion. For the Great Plains mesoscale tracer experiment, the observations suggest that the Great Plains nocturnal low-level jet played an important role in transporting and deforming the tracer cloud. A suite of ten two- and three-dimensional numerical meteorological experiments was devised to investigate the relative contributions of topography, other surface inhomogeneities, atmospheric baroclinicity, synoptic-scale flow evolution, and meteorological model initialization time to the structure and evolution of the low-level mesoscale flow field and thus to MAD. Results from the ten mesoscale meteorological simulations are compared in this part of the paper. The predicted wind fields display significant differences, which give rise in turn to significant differences in predicted low-level transport. The presence of an oscillatory ageostrophic component in the observed synoptic low-level winds for this case is shown to complicate initialization of the meteorological model considerably and is the likely cause of directional errors in the predicted mean tracer transport. A companion paper describes the results from the associated dispersion simulations.

Validation of methodology for determination of the mercury methylation potential in sediments using radiotracers.

PubMed

Zizek, Suzana; Ribeiro Guevara, Sergio; Horvat, Milena

2008-04-01

Experiments to determine the mercury methylation potential were performed on sediments from two locations on the river Idrijca (Slovenia), differing in ambient mercury concentrations. The tracer used was the radioactive isotope (197)Hg. The benefit of using this tracer is its high specific activity, which enables spikes as low as 0.02 ng Hg(2+) g(-1) of sample to be used. It was therefore possible to compare the efficiency of the methylation potential experiments over a range of spike concentrations from picogram to microgram levels. The first part of the work aimed to validate the experimental blanks and the second part consisted of several series of incubation experiments on two different river sediments using a range of tracer additions. The results showed high variability in the obtained methylation potentials. Increasing Hg(2+) additions gave a decrease in the percentage of the tracer methylated during incubation; in absolute terms, the spikes that spanned four orders of magnitude (0.019-190 pg g(-1) of sediment slurry) resulted in MeHg formation between 0.01 and 0.1 ng MeHg g(-1) in Podroteja and Kozarska Grapa. Higher spikes resulted in slightly elevated MeHg production (up to a maximum of 0.27 ng g(-1)). The values of methylation potential were similar in both sediments. The results imply that the experimental determination of mercury methylation potential strongly depends on the experimental setup itself and the amount of tracer added to the system under study. It is therefore recommended to use different concentrations of tracer and perform the experiments in several replicates. The amount of mercury available for methylation in nature is usually very small. Therefore, adding very low amounts of tracer in the methylation potential studies probably gives results that have a higher environmental relevance. It is also suggested to express the results obtained in absolute amounts of MeHg produced and not just as the percentage of the added tracer.

Test of synthetic DNA tracers in a periodic hydrodynamic system for time-variable transit time distribution assessment

NASA Astrophysics Data System (ADS)

Dahlke, H. E.; Wang, C.; McNew, C.; McLaughlin, S.; Lyon, S. W.

2016-12-01

Recent research on time-varying transport through hydrologic systems proposed using decomposed over-printed tracer breakthrough curves to directly observe transport through complex flow systems. This method, also known as the PERTH (Periodic Tracer Hierarchy) method requires periodic flow and multiple tracer injections to reveal changes in flow pathways and transport behavior. Time-variable transit time distributions (TTD) estimated from tracer breakthrough curves often vary with the storage state of the system, which in turn is influenced by internal and external variabilities, such as the arrangement of flow pathways and fluctuations in system inputs. Deciphering internal from external variabilities in TTDs might help to advance the use of TTDs for estimating the physical state of a system; however, thus far the finite number of unique conservative tracers available for tracing has limited deeper insights. Synthetic DNA tracers consisting of short strands of synthetic DNA encapsulated by polylactic acid (PLA) microspheres could potentially provide multiple unique tracers with identical transport properties needed to explore time varying transport through hydrologic systems in more detail. An experiment was conducted on the miniLeo hillslope, a 1 m3 sloping lysimeter, within the Biosphere 2 Landscape Evolution Observatory near Tucson, AZ to investigate transit time variability. The goal of the experiment was to 1) test the suitability of using synthetic DNA tracers for estimating TTDs in a hydrologic system and 2) to determine the TTDs of individual tracer pulses under periodic steady-state conditions. Five DNA tracers, consisting of four unique, encapsulated DNA sequences and one free/non-encapsulated DNA sequence, were applied as reference and probe tracers together with deuterium, using the PERTH method. The lysimeter received three 2-hour pulses of rainfall at a rate of 30 mm/hr for 10 days. Initial results show that both the encapsulated and free DNA tracers were successfully transported in a pulsed manner through the system, but had overall longer breakthrough times than the reference deuterium tracer. Comparison of the DNA probe tracers indicate differences in transit times, likely related to differences in tracer mobilization in response to the time-variant rainfall input.

Hydrological tracers using nanobiotechnology: proof of concept.

PubMed

Sharma, Asha N; Luo, Dan; Walter, M Todd

2012-08-21

In order to answer questions that involve differentiating among multiple and potentially interacting hydrological flowpaths, it would be ideal to use multiple tracers with identical transport properties that can nonetheless be distinguished from each other. This paper describes the development and proof of concept of a new kind of engineered tracer system that allows a large number of individual tracers to be simultaneously distinguished from one another. This new tracer is composed of polylactic acid (PLA) microspheres into which short strands of synthetic DNA and paramagnetic iron oxide nanoparticles are incorporated. The synthetic DNA serves as the "label" or "tag" in our tracers that allow us to distinguish one tracer from another, and paramagnetic iron oxide nanoparticles are included in the tracer to facilitate magnetic concentration of the tracers in potentially dilute water samples. Some potential advantages of this tracer concept include: virtually limitless uniquely labeled tracers, highly sensitive detection, and relatively moderate expense. Three proof-of-concept experiments at scales ranging from orders of 10 cm to 100 m demonstrated the use of the tracer system.

A tracer experiment to study flow paths of water in a forest soil

NASA Astrophysics Data System (ADS)

Feyen, H.; Wunderli, H.; Wydler, H.; Papritz, A.

1999-12-01

This contribution discusses a tracer experiment, which was performed to study the flow paths of water in a macroporous forest soil. The experiment was performed in the framework of a study on the cycling of nitrogen in forested Prealpine catchments, in which losses of nitrate from virtually pristine areas were observed. Two soil plots with distinct micro-topography and top-soil were investigated: a well drained mor humus on a mound and a wet muck humus in a small depression. To reveal the effect of the soil horizons on the flow regime, tracers were applied both onto the soil surface and injected into the sub-soil. Tracers injected directly into the gleyic sub-soil reached the outlet (at a distance of 3.3 m) about 1000 times faster than could be expected from the saturated hydraulic conductivity of the soil matrix. Peak concentrations were observed after 18 (muck humus, tracer recovery 31%) to 70 min (mor humus, tracer recovery 40%). The peak concentration was 10 times smaller on the drier mor humus plot as compared to the muck humus. The mobile water content of the sub-soil varied between 0.5 (muck humus) and 1.3% (mor humus) of the total available soil water. The discrepancy in residence time, peak concentration and volume of mobile water between both sub-soils can be attributed to the differently structured sub-soil (longer travel distance and mixing volume in the drier mor humus). Tracers applied onto the soil surface resulted in a much slower breakthrough (tracer peaks after 400-700 min). Thus, in contrast to the sub-soil, flow through the matrix was the predominating transport process in the upper humus layers of both plots.

Tracer element for indoor PM2.5 in China migrated from outdoor

NASA Astrophysics Data System (ADS)

Ji, Wenjing; Li, Hongyu; Zhao, Bin; Deng, Furong

2018-03-01

Sulfur and nickel have been widely used as tracers of outdoor PM2.5 (particulate matter with an aerodynamic diameter ≤ 2.5 μm) in the United States and Europe; however, their feasibility as tracers has not been verified yet in China. We aim to verify whether sulfur or nickel could be used as a tracer element and, if not, to identify a suitable tracer element for outdoor PM2.5 in China. We conduct two types of experiments, namely, preliminary and main-study experiments. We analyze 102 pairs of indoor and outdoor PM2.5 samples in Beijing. The correlation between the I/O (indoor/outdoor) ratio of an element and the I/O ratio of total PM2.5 is one of the criteria used to test whether this element can be used as a tracer element. The average concentrations of nickel are found to be below the detection limits in both preliminary and main-study tests. Thus, nickel cannot be used as a tracer element in China. Based on the correlations of elemental I/O ratios and the I/O ratio of total PM2.5 in the preliminary and main-study tests, sulfur also cannot be used as a tracer element; however, it should be feasible to use iron as a tracer element in Beijing according to the test results. The estimated infiltration factor obtained by using iron as tracer is extremely consistent with the calculations based on the mass balance model. In summary, iron is found to be more suitable as a tracer for outdoor PM2.5 in Beijing than sulfur or nickel.

Tracer-dilution experiments and solute-transport simulations for a mountain stream, Saint Kevin Gulch, Colorado. Water resources investigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Broshears, R.E.; Bencala, K.E.; Kimball, B.A.

In 1986, the U.S. Geological Survey began an investigation to characterize within-stream hydrologic, chemical, and biological processes that influence the distribution and transport of hazardous constituents in the headwaters of the Arkansas River. The report describes the results of tracer-dilution experiments and associated solute-transport simulations for a 1804-meter stretch of Saint Kevin Gulch, a stream affected by acid mine drainage in Lake County, Colorado. The report describes transient changes in tracer (lithium chloride) concentration at six instream sites.

Decolorization of Mordant red 73 azo dye in water using H2O2/UV and photo-Fenton treatment.

PubMed

Elmorsi, Taha M; Riyad, Yasser M; Mohamed, Zeinhom H; Abd El Bary, Hassan M H

2010-02-15

Decolorization of the Mordant red 73 (MR73) azo dye in water was investigated in laboratory-scale experiments using UV/H(2)O(2) and photo-Fenton treatments. Photodegradation experiments were carried out in a stirred batch photoreactor equipped with a low-pressure mercury lamp as UV source at 254 nm. The effect of operating parameters such as pH, [H(2)O(2)](,) [dye] and the presence of inorganic salts (NaNO(3), NaCl and Na(2)CO(3)) were also investigated. The results indicated that complete dye decolorization was obtained in less than 60 min under optimum conditions. Furthermore, results showed that dye degradation was dependent upon pH, [H(2)O(2)] and initial dye concentration. The presence of chloride ion led to large decreases in the photodegradation rate of MR73 while both nitrate and carbonate ions have a slight effect. The photo-Fenton treatment, in the presence of Fe powder as a source of Fe(2+) ions, was highly efficient and resulted in 99% decolorization of the dye in 15 min. Mineralization of MR73 dye was investigated by determining chemical oxygen demand (COD). In a 3h photoperiod "65%" of the dye was mineralized by the H(2)O(2)/UV process, while the photo-Fenton treatment was more efficient producing 85% mineralization over the same 3-h period.

Tracer diffusion in a sea of polymers with binding zones: mobile vs. frozen traps.

PubMed

Samanta, Nairhita; Chakrabarti, Rajarshi

2016-10-19

We use molecular dynamics simulations to investigate the tracer diffusion in a sea of polymers with specific binding zones for the tracer. These binding zones act as traps. Our simulations show that the tracer can undergo normal yet non-Gaussian diffusion under certain circumstances, e.g., when the polymers with traps are frozen in space and the volume fraction and the binding strength of the traps are moderate. In this case, as the tracer moves, it experiences a heterogeneous environment and exhibits confined continuous time random walk (CTRW) like motion resulting in a non-Gaussian behavior. Also the long time dynamics becomes subdiffusive as the number or the binding strength of the traps increases. However, if the polymers are mobile then the tracer dynamics is Gaussian but could be normal or subdiffusive depending on the number and the binding strength of the traps. In addition, with increasing binding strength and number of polymer traps, the probability of the tracer being trapped increases. On the other hand, removing the binding zones does not result in trapping, even at comparatively high crowding. Our simulations also show that the trapping probability increases with the increasing size of the tracer and for a bigger tracer with the frozen polymer background the dynamics is only weakly non-Gaussian but highly subdiffusive. Our observations are in the same spirit as found in many recent experiments on tracer diffusion in polymeric materials and question the validity of using Gaussian theory to describe diffusion in a crowded environment in general.

Potential impacts of discharging tertiary-treated wastewater into Port Royal Sound, South Carolina

USGS Publications Warehouse

Speiran, G.K.; Belval, D.L.

1985-01-01

An assessment of physical characteristics of Port Royal Sound was combined with the results of a dye tracer study and with data collected from a previous environmental study to describe the impact on the water quality from discharging tertiary treated wastewater into the sound. Calculated velocities for the time of maximum velocity in the tidal cycle ranged from 2.32 ft/sec near the bottom to 4.65 ft/sec near the surface of the sound in a cross section in the vicinity of a proposed wastewater outfall. Vertical velocity distributions calculated for the time of maximum velocity were similar at all stations at which velocities were measured except the station in shallow water near the shore. A recent bathymetric chart of the vicinity of the proposed outfall indicates that a bar extends farther along the northern shore of Hilton Head Island than indicated on earlier nautical charts of Port Royal Sound. Continued extension of this bar could alter the impact on water quality from discharge of treated wastewater into the sound. Further study may be needed to monitor changes in the bar if the outfall is located between the bar and Hilton Head Island. Conservative calculations based on the results of the dye tracer study indicate that the discharge of 10.9 million gallons/day of wastewater having concentrations of biochemical oxygen demand and suspended solids of 15 mg/L will result in a maximum cumulative increase in concentrations of biochemical oxygen demand of < 0.01 mg/L and no increase in concentrations of suspended solids at high slack tide in the part of Port Royal Sound most affected by the proposed wastewater discharge. (Author 's abstract)

Highly enriched multiply-labeled stable isotopic compounds as atmospheric tracers

DOEpatents

Goldblatt, M.; McInteer, B.B.

1974-01-29

Compounds multiply-labeled with stable isotopes and highly enriched in these isotopes are readily capable of detection in tracer experiments involving high dilutions. Thus, for example, /sup 13/C/sup 18/O/sub 2/ provides a useful tracer for following atmospheric pol lution produced as a result of fossil fuel burning. (Official Gazette)

Infiltration in unsaturated layered fluvial deposits at Rio Bravo : photo essay and data summary.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brainard, James Robert; Glass, Robert John, Jr.

2007-08-01

An infiltration and dye transport experiment was conducted to visualize flow and transport processes in a heterogeneous, layered, sandy-gravelly fluvial deposit adjacent to Rio Bravo Boulevard in Albuquerque, NM. Water containing red dye followed by blue-green dye was ponded in a small horizontal zone ({approx}0.5 m x 0.5 m) above a vertical outcrop ({approx}4 m x 2.5 m). The red dye lagged behind the wetting front due to slight adsorption thus allowing both the wetting front and dye fronts to be observed in time at the outcrop face. After infiltration, vertical slices were excavated to the midpoint of the infiltrometermore » exposing the wetting front and dye distribution in a quasi three-dimensional manner. At small-scale, wetting front advancement was influenced by the multitude of local capillary barriers within the deposit. However at the scale of the experiment, the wetting front appeared smooth with significant lateral spreading {approx} twice that in the vertical, indicating a strong anisotropy due to the pronounced horizontal layering. The dye fronts exhibited appreciably more irregularity than the wetting front, as well as the influence of preferential flow features (a fracture) that moved the dye directly to the front, bypassing the fresh water between.« less

Determination of minimum enzymatic decolorization time of reactive dye solution by spectroscopic & mathematical approach.

PubMed

Celebi, Mithat; Ozdemir, Zafer Omer; Eroglu, Emre; Altikatoglu, Melda; Guney, Ibrahim

2015-02-01

Synthetic dyes are very important for textile dyeing, paper printing, color photography and petroleum products. Traditional methods of dye removal include biodegradation, precipitation, adsorption, chemical degradation, photo degradation, and chemical coagulation. Dye decolorization with enzymatic reaction is an important issue for several research field (chemistry, environment) In this study, minimum decolorization time of Remazol Brilliant Blue R dye with Horseradish peroxidase enzyme was calculated using with mathematical equation depending on experimental data. Dye decolorization was determined by monitoring the absorbance decrease at the specific maximum wavelength for dye. All experiments were carried out with different initial dye concentrations of Remazol Brilliant Blue R at 25 degrees C constant temperature for 30 minutes. The development of the least squares estimators for a nonlinear model brings about complications not encountered in the case of the linear model. Decolorization times for completely removal of dye were calculated according to equation. It was shown that mathematical equation was conformed exponential curve for dye degradation.

Multicolor Fluorescence Imaging of Traumatic Brain Injury in a Cryolesion Mouse Model

PubMed Central

2012-01-01

Traumatic brain injury is characterized by initial tissue damage, which then can lead to secondary processes such as cell death and blood-brain-barrier disruption. Clinical and preclinical studies of traumatic brain injury typically employ anatomical imaging techniques and there is a need for new molecular imaging methods that provide complementary biochemical information. Here, we assess the ability of a targeted, near-infrared fluorescent probe, named PSS-794, to detect cell death in a brain cryolesion mouse model that replicates certain features of traumatic brain injury. In short, the model involves brief contact of a cold rod to the head of a living, anesthetized mouse. Using noninvasive whole-body fluorescence imaging, PSS-794 permitted visualization of the cryolesion in the living animal. Ex vivo imaging and histological analysis confirmed PSS-794 localization to site of brain cell death. The nontargeted, deep-red Tracer-653 was validated as a tracer dye for monitoring blood-brain-barrier disruption, and a binary mixture of PSS-794 and Tracer-653 was employed for multicolor imaging of cell death and blood-brain-barrier permeability in a single animal. The imaging data indicates that at 3 days after brain cryoinjury the amount of cell death had decreased significantly, but the integrity of the blood-brain-barrier was still impaired; at 7 days, the blood-brain-barrier was still three times more permeable than before cryoinjury. PMID:22860222

Velocity, bathymetry, and transverse mixing characteristics of the Ohio River upstream from Cincinnati, Ohio, October 2004-March 2006

USGS Publications Warehouse

Koltun, G.F.; Ostheimer, Chad J.; Griffin, Michael S.

2006-01-01

Velocity, bathymetry, and transverse (cross-channel) mixing characteristics were studied in a 34-mile study reach of the Ohio River extending from the lower pool of the Captain Anthony Meldahl Lock and Dam, near Willow Grove, Ky, to just downstream from the confluence of the Licking and Ohio Rivers, near Newport, Ky. Information gathered in this study ultimately will be used to parameterize hydrodynamic and water-quality models that are being developed for the study reach. Velocity data were measured at an average cross-section spacing of about 2,200 feet by means of boat-mounted acoustic Doppler current profilers (ADCPs). ADCP data were postprocessed to create text files describing the three-dimensional velocity characteristics in each transect. Bathymetry data were measured at an average transect spacing of about 800 feet by means of a boat-mounted single-beam echosounder. Depth information obtained from the echosounder were postprocessed with water-surface slope and elevation information collected during the surveys to compute stream-bed elevations. The bathymetry data were written to text files formatted as a series of space-delimited x-, y-, and z-coordinates. Two separate dye-tracer studies were done on different days in overlapping stream segments in an 18.3-mile section of the study reach to assess transverse mixing characteristics in the Ohio River. Rhodamine WT dye was injected into the river at a constant rate, and concentrations were measured in downstream cross sections, generally spaced 1 to 2 miles apart. The dye was injected near the Kentucky shoreline during the first study and near the Ohio shoreline during the second study. Dye concentrations were measured along transects in the river by means of calibrated fluorometers equipped with flow-through chambers, automatic temperature compensation, and internal data loggers. The use of flow-through chambers permitted water to be pumped continuously out of the river from selected depths and through the fluorometer for measurement as the boat traversed the river. Time-tagged concentration readings were joined with horizontal coordinate data simultaneously captured from a differentially corrected Global Positioning System (GPS) device to create a plain-text, comma-separated variable file containing spatially tagged dye-concentration data. Plots showing the transverse variation in relative dye concentration indicate that, within the stream segments sampled, complete transverse mixing of the dye did not occur. In addition, the highest concentrations of dye tended to be nearest the side of the river from which the dye was injected. Velocity, bathymetry, and dye-concentration data collected during this study are available for Internet download by means of hyperlinks in this report. Data contained in this report were collected between October 2004 and March 2006.

NATURAL GRADIENT EXPERIMENT ON SOLUTE TRANSPORT IN A SAND AQUIFER. 2. SPATIAL MOMENTS AND THE ADVECTION AND DISPERSION OF NONREACTIVE TRACERS

EPA Science Inventory

The three-dimensional movement of a tracer plume containing bromide and chloride is investigated using the data base from a large-scale natural gradient field experiment on groundwater solute transport. The analysis focuses on the zeroth-, first-, and second-order spatial moments...

A deliberate tracer experiment in Santa Monica Basin. [for ocean density strata diffusion

NASA Technical Reports Server (NTRS)

Ledwell, J. R.; Broecker, W. S.; Watson, A. J.

1986-01-01

A tracer technique was developed for measurements of diffusion across oceanic density strata using SF6 and perfluorodecalin (PFD) tracers in the Santa Monica Basin. Fifty days after injection, the tracers were found to have mixed along the isopycnal surface to nearly every part of the basin. The diapycnal spreading of the tracer distributions yielded an apparent eddy diffusivity of 0.33 + or - 0.08 sq cm/s at the ambient density gradient of 4.0 + or - 0.5 x 10 to the -9th g/cm to the 4th.

NBC Hazard Prediction Model Capability Analysis

DTIC Science & Technology

1999-09-01

tactical units surveyed, only the 82nd Airborne Division indicated any real experience with either model. The tactical units surveyed did use some form...Tracer Experiment (1987) and ETEX =European Tracer Experiment (1994). 22 These data sets include Phase I Dugway data, the Prairie Grass data set...I 8 hr) HPAC Different scales shown swru. Doll ~ (1.ean) Tolll GD 111:3-Stp-88 2J:OOL (I.DOin) ... 1 .... .... ... ..... ,l

Sensitivity analysis of tracer transport in variably saturated soils at USDA-ARS OPE3 field site

USDA-ARS?s Scientific Manuscript database

The objective of this study was to assess the effects of uncertainties in hydrologic and geochemical parameters on the results of simulations of the tracer transport in variably saturated soils at the USDA-ARS OPE3 field site. A tracer experiment with a pulse of KCL solution applied to an irrigatio...

The Quantitative Determination of Food Dyes in Powdered Drink Mixes: A High School or General Science Experiment

ERIC Educational Resources Information Center

Sigmann, Samuella B.; Wheeler, Dale E.

2004-01-01

The development of a simple spectro photometric method to quantitatively determine the quantity of FD&C color additives present in powdered drink mixes, are focused by the investigations. Samples containing single dyes of binary mixtures of dyes can be analyzed using this method.

Transport Experiments

NASA Technical Reports Server (NTRS)

Hall, Timothy M.; Wuebbles, Donald J.; Boering, Kristie A.; Eckman, Richard S.; Lerner, Jean; Plumb, R. Alan; Rind, David H.; Rinsland, Curtis P.; Waugh, Darryn W.; Wei, Chu-Feng

1999-01-01

MM II defined a series of experiments to better understand and characterize model transport and to assess the realism of this transport by comparison to observations. Measurements from aircraft, balloon, and satellite, not yet available at the time of MM I [Prather and Remsberg, 1993], provide new and stringent constraints on model transport, and address the limits of our transport modeling abilities. Simulations of the idealized tracers the age spectrum, and propagating boundary conditions, and conserved HSCT-like emissions probe the relative roles of different model transport mechanisms, while simulations of SF6 and C02 make the connection to observations. Some of the tracers are related, and transport diagnostics such as the mean age can be derived from more than one of the experiments for comparison to observations. The goals of the transport experiments are: (1) To isolate the effects of transport in models from other processes; (2) To assess model transport for realistic tracers (such as SF6 and C02) for comparison to observations; (3) To use certain idealized tracers to isolate model mechanisms and relationships to atmospheric chemical perturbations; (4) To identify strengths and weaknesses of the treatment of transport processes in the models; (5) To relate evaluated shortcomings to aspects of model formulation. The following section are included:Executive Summary, Introduction, Age Spectrum, Observation, Tropical Transport in Models, Global Mean Age in Models, Source-Transport Covariance, HSCT "ANOY" Tracer Distributions, and Summary and Conclusions.

Melanin-concentrating hormone and neuropeptide EI projections from the lateral hypothalamic area and zona incerta to the medial septal nucleus and spinal cord: a study using multiple neuronal tracers.

PubMed

Bittencourt, J C; Elias, C F

1998-09-14

The projection pathways of neurons containing melanin-concentrating hormone (MCH) and neuropeptide EI (NEI), two peptides colocalized in the lateral hypothalamic area (LHA) of the rat, were mapped using the retrogradely transported fluorescent dyes, true blue (TB) and diamidino yellow (DY). TB and DY were injected into the medial septum/diagonal band complex (MS/DBC) and the thoracic level of the spinal cord (SpCd), respectively. Brains from rats receiving only one or both tracer injections were immunohistochemically stained for MCH in the spinal cord and NEI in the forebrain. In the MS/DBC, NEI-immunoreactive (-ir) fibers are concentrated in the MS and in the vertical and horizontal limbs of the DBC. In the SpCd, MCH-ir fibers are concentrated primarily in lamina X. Of the diencephalic NEI-ir neurons, 37.15% project to the MS/DBC and reside in the rostromedial zona incerta (ZIm), in the LHAt and LHAp, and in the perifornical region. Of the diencephalic MCH-ir neurons, 20.2% project to the SpCd and reside in the LHAt and LHAp. In addition, 2. 2% of the MCH-ir cells and 8.7% of the NEI-ir cells in the hypothalamus were labeled with both retrograde tracers and thus project to both the MS/DBC and SpCd. These dual projection neurons are located mainly in the LHAt and LHAp. Anterograde injections of the tracer Phaseolus vulgaris leucoagglutinin into the LHAt and ZIm corroborated our findings in the retrograde studies. Potential autonomic and behavioral roles of the NEI and MCH systems in the MS/DBC and the SpCd are discussed. Copyright 1998 Elsevier Science B. V.

System Validation Experiments for Obtaining Tracer Laser-Induced Fluorescence Data at Elevated Pressure and Temperature.

PubMed

Hartwig, Jason; Mittal, Gaurav; Kumar, Kamal; Sung, Chih-Jen

2018-04-01

This paper presents a set of system validation experiments that can be used to qualify either static or flow experimental systems for gathering tracer photophysical data or conducting laser diagnostics at high pressure and temperature in order to establish design and operation limits and reduce uncertainty in data interpretation. Tests demonstrated here quantify the effect of tracer absorption at the test cell walls, stratification, photolysis, pyrolysis, adequacy of mixing and seeding, and reabsorption of laser light using acetone as the tracer and 282 nm excitation. Results show that acetone exhibits a 10% decrease in fluorescence signal over 36 000 shots at 127.4 mJ/cm 2 , and photolysis is negligible below 1000 shots collected. Meanwhile, appropriately chosen gas residence times can mitigate risks due to pyrolysis and inadequate mixing and seeding; for the current work 100 ms residence time ensured <0.5% alteration of tracer number density due to thermal destruction. Experimental results here are compared to theoretical values from the literature.

Enhanced mixing in polyacrylamide gels containing embedded silica nanoparticles as internal electroosmotic pumps.

PubMed

Matos, Marvi A; White, Lee R; Tilton, Robert D

2008-02-15

Many biosensors, including those based on sensing agents immobilized inside hydrogels, suffer from slow response dynamics due to mass transfer limitations. Here we present an internal pumping strategy to promote convective mixing inside crosslinked polymer gels. This is envisioned as a potential tool to enhance biosensor response dynamics. The method is based on electroosmotic flows driven by non-uniform, oscillating electric fields applied across a polyacrylamide gel that has been doped with charged colloidal silica inclusions. Evidence for enhanced mixing was obtained from florescence recovery after photobleaching (FRAP) measurements with fluorescein tracer dyes dissolved in the gel. Mixing rates in silica-laden gels under the action of the applied electric fields were more than an order of magnitude faster than either diffusion or electrophoretically driven mixing in gels that did not contain silica. The mixing enhancement was due in comparable parts to the electroosmotic pumping and to the increase in gel swelling caused by the presence of the silica inclusions. The latter had the effect of increasing tracer mobility in the silica-laden gels.

Synthesis of Triarylmethane and Xanthene Dyes Using Electrophilic Aromatic Substitution Reactions

ERIC Educational Resources Information Center

McCullagh, James V.; Daggett, Kelly A.

2007-01-01

The synthesis of dyes has long been a popular topic in organic chemistry laboratory experiments because it allows students to see first hand that reactions learned in class can be used to make compounds with useful applications. In this experiment electrophilic aromatic substitution reactions are used to synthesize several triarylmethane and…

Photocatalytic Destruction of an Organic Dye Using TiO2 and Solar Energy.

ERIC Educational Resources Information Center

Giglio, Kimberly D.; And Others

1995-01-01

Describes a general chemistry experiment that is carried out in sunlight to illustrate the ability of TiO2 to act as a photocatalyst by mineralizing an organic dye into carbon dioxide. Details about the construction of the reactor system used to perform this experiment are included. (DDR)

Home-made experiment of Dye-sensitized TiO2 Nanocrystalline Solar Cells and its education evaluation

NASA Astrophysics Data System (ADS)

Tai, M. F.; Shieh, M. C.; Chen, T. W.

2010-03-01

Dyes extracted from some natural fruits including anthocyanins absorb sunlight and effectively activate electrons of anthocyanins. Thus these activated electrons are conducted between TiO2 nanocrystals and form electric potential and current between two electrodes. The dyes can be gotten from the natural fruits, such as blackberries, raspberry, pomegranate seeds and bing cherries. This principle permits making a dye sensitized TiO2 nanocrystallines solar cell (DSSC). All required materials and tools for fabricating a home- made DSSC are easy to obtain around home. The procedures are perfect hands-on experiment as well as demonstration in K-12 schools or home settings. We have designed several protocols for fabricating DSSC and have successfully demonstrated in more than 100 activities with different level students. K-12 Students were able to build their own working DSSC's within 2-3 hours sessions and learned about alternative energy sources. These experiments can inspire students and general public about the modern technology in daily life. Low cost (low than US 3 in Taiwan)and safety are also ensured in our DSSC experiments.

Time-of-travel study in the Sebasticook River basin, Maine

USGS Publications Warehouse

Parker, Gene W.

1981-01-01

Time of travel was determined for four reaches of the Sebasticook River, two on the East Branch Sebasticook River and two on the main stem of the Sebasticook River. Reach A included 7.8 miles of the East Branch Sebasticook River from Dexter to Corinna, Maine. Reach B included 8 miles of the East Branch Sebasticook River from Newport to its mouth, and one mile of the Sebasticook River to Peltoma bridge near Pittsfield, Maine. Reach C included 3.5 miles of the Sebasticook River from Hartland to West Palmyra, Maine. Reach D included 31.4 miles of the Sebasticook River from Pittsfield to Winslow, Maine. Using a 20-percent solution of rhodamine WT, three dye tracer study runs were made in each reach. Water samples were collected at 11 sites in the study area. The samples were then analyzed for dye concentrations. Time-of-travel data for each subreach are depicted in a series of illustrations and summarized in tabular form. Examples are given to illustrate the use of the data presented. (USGS)

Spectrometric Analysis for Pulse Jet Mixer Testing

DOE Office of Scientific and Technical Information (OSTI.GOV)

ZEIGLER, KRISTINE

2004-07-12

The Analytical Development Section (ADS) was tasked with providing support for a Hanford River Protection Program-Waste Treatment Program (RPP-WTP) project test involving absorption analysis for non-Newtonian pulse jet mixer testing for small scale (PJM) and prototype (CRV) tanks with sparging. Tanks filled with clay were mixed with various amounts of powdered dye as a tracer. The objective of the entire project was to determine the best mixing protocol (nozzle velocity, number of spargers used, total air flow, etc.) by determining the percent mixed volume through the use of an ultraviolet-visible (UV-Vis) spectrometer. The dye concentration within the sample could bemore » correlated to the volume fraction mixed in the tank. Samples were received in vials, a series of dilutions were generated from the clay, allowed to equilibrate, then centrifuged and siphoned for the supernate liquid to analyze by absorption spectroscopy. Equilibration of the samples and thorough mixing of the samples were a continuous issue with dilution curves being difficult to obtain. Despite these technical issues, useful data was obtained for evaluation of various mix conditions.« less

Limited effectiveness of patent blue dye in addition to isotope scanning for identification of sentinel lymph nodes: Cross-sectional real-life study in 1024 breast cancer patients.

PubMed

Rauch, Philippe; Merlin, Jean-Louis; Leufflen, Lea; Salleron, Julia; Harlé, Alexandre; Olivier, Pierre; Marchal, Frédéric

2016-09-01

Although morbidity is reduced when sentinel lymph node (SLN) biopsy is performed with dual isotopic and blue dye identification, the effectiveness of adding blue dye to radioisotope remains debated because side effects including anaphylactic reactions. Using data from a prospectively maintained database, 1884 lymph node-negative breast cancer patients who underwent partial mastectomy with SLN mapping by a dual-tracer using patent blue dye (PBD) and radioisotope were retrospectively studied between January 2000 and July 2013. Patients with tumors <3 cm and with >1 node detected by one of the two techniques (N = 1024) were included in this real-life cross-sectional study. Among the 1024 patients, 274 had positive SLN detected by isotopic and/or PBD staining. Only 4 patients having no detectable radioactivity in the axilla had SLN identified only by PBD staining (blue-only) while 26 patients had SLN only identified by isotopic detection (hot-only) illustrating failure rates of 9.5% (26/274) and 1.5% (4/274), respectively. Among these four patients, two had negative lymphoscintigraphy. Therefore, the contribution of PBD to metastatic nodes identification was relevant for only 2/274 patients (0.8%). Three patients (0.3%) had an allergic reaction with PBD, and anaphylactic shock occurred in two cases (0.2%). The added-value of PBD to reduce the false-negative rate of SLN mapping is only limited to the rare cases in which no radioactivity is detectable in the axilla (<1%). When a radioisotope mapping agent is available, the use of PBD should be avoided, because it can induce anaphylaxis. Copyright © 2016 IJS Publishing Group Ltd. Published by Elsevier Ltd. All rights reserved.

Optical properties of cyanine dyes in nanotubes of chrysotile asbestos

NASA Astrophysics Data System (ADS)

Starovoytov, Anton A.; Vartanyan, Tigran A.; Belotitskii, Vladimir I.; Kumzerov, Yuri A.; Sysoeva, Anna A.

2017-08-01

Optical properties of cyanine dye molecules incorporated in nanotubes of natural chrysotile asbestos are studied. The absorption and fluorescence spectra of dye in asbestos have the similar shapes as in the ethanol solution, apart from small blue shift of the maxima. The Stokes shift in asbestos is smaller than in the ethanol solution. The fluorescence decay times of the dyes in asbestos nanotubes are found to be larger than that in the case of thin films of the same dyes formed on the transparent dielectric supports. This observation is rationalized in terms of the stereoisomerization hindrance in the excited electronic state of dye molecules. At the same time linear dichroism and fluorescence anisotropy observed in the experiment indicate that the embedded dye molecules are well-isolated monomer oriented predominantly along asbestos nanotubes.

Structural Heterogeneity and Quantitative FRET Efficiency Distributions of Polyprolines through a Hybrid Atomistic Simulation and Monte Carlo Approach

PubMed Central

Hoefling, Martin; Lima, Nicola; Haenni, Dominik; Seidel, Claus A. M.; Schuler, Benjamin; Grubmüller, Helmut

2011-01-01

Förster Resonance Energy Transfer (FRET) experiments probe molecular distances via distance dependent energy transfer from an excited donor dye to an acceptor dye. Single molecule experiments not only probe average distances, but also distance distributions or even fluctuations, and thus provide a powerful tool to study biomolecular structure and dynamics. However, the measured energy transfer efficiency depends not only on the distance between the dyes, but also on their mutual orientation, which is typically inaccessible to experiments. Thus, assumptions on the orientation distributions and averages are usually made, limiting the accuracy of the distance distributions extracted from FRET experiments. Here, we demonstrate that by combining single molecule FRET experiments with the mutual dye orientation statistics obtained from Molecular Dynamics (MD) simulations, improved estimates of distances and distributions are obtained. From the simulated time-dependent mutual orientations, FRET efficiencies are calculated and the full statistics of individual photon absorption, energy transfer, and photon emission events is obtained from subsequent Monte Carlo (MC) simulations of the FRET kinetics. All recorded emission events are collected to bursts from which efficiency distributions are calculated in close resemblance to the actual FRET experiment, taking shot noise fully into account. Using polyproline chains with attached Alexa 488 and Alexa 594 dyes as a test system, we demonstrate the feasibility of this approach by direct comparison to experimental data. We identified cis-isomers and different static local environments as sources of the experimentally observed heterogeneity. Reconstructions of distance distributions from experimental data at different levels of theory demonstrate how the respective underlying assumptions and approximations affect the obtained accuracy. Our results show that dye fluctuations obtained from MD simulations, combined with MC single photon kinetics, provide a versatile tool to improve the accuracy of distance distributions that can be extracted from measured single molecule FRET efficiencies. PMID:21629703

Lanthanide-labeled clay: A new method for tracing sediment transport in Karst

USGS Publications Warehouse

Mahler, B.J.; Bennett, P.C.; Zimmerman, M.

1998-01-01

Mobile sediment is a fundamental yet poorly characterized aspect of mass transport through karst aquifers. Here the development and field testing of an extremely sensitive particle tracer that may be used to characterize sediment transport in karst aquifers is described. The tracer consists of micron-size montmorillonite particles homoionized to the lanthanide form; after injection and retrieval from a ground water system, the lanthanide ions are chemically stripped from the clay and quantified by high performance liquid chromatography. The tracer meets the following desired criteria: low detection limit; a number of differentiable signatures; inexpensive production and quantification using standard methods; no environmental risks; and hydrodynamic properties similar to the in situ sediment it is designed to trace. The tracer was tested in laboratory batch experiments and field tested in both surface water and ground water systems. In surface water, arrival times of the tracer were similar to those of a conservative water tracer, although a significant amount of material was lost due to settling. Two tracer tests were undertaken in a karst aquifer under different flow conditions. Under normal flow conditions, the time of arrival and peak concentration of the tracer were similar to or preceded that of a conservative water tracer. Under low flow conditions, the particle tracer was not detected, suggesting that in low flow the sediment settles out of suspension and goes into storage.Mobile sediment is a fundamental yet poorly characterized aspect of mass transport through karst aquifers. Here the development and field testing of an extremely sensitive particle tracer that may be used to characterize sediment transport in karst aquifers is described. The tracer consists of micron-size montmorillonite particles homoionized to the lanthanide form; after injection and retrieval from a ground water system, the lanthanide ions are chemically stripped from the clay and quantified by high performance liquid chromatography. The tracer meets the following desired criteria: low detection limit; a number of differentiable signatures; inexpensive production and quantification using standard methods; no environmental risks; and hydrodynamic properties similar to the in situ sediment it is designed to trace. The tracer was tested in laboratory batch experiments and field tested in both surface water and ground water systems. In surface water, arrival times of the tracer were similar to those of a conservative water tracer, although a significant amount of material was lost due to settling. Two tracer tests were undertaken in a karst aquifer under different flow conditions. Under normal flow conditions, the time of arrival and peak concentration of the tracer were similar to or preceded that of a conservative water tracer. Under low flow conditions, the particle tracer was not detected, suggesting that in low flow the sediment settles out of suspension and goes into storage.

Measuring the Dispersion Curve of a PMMA-Fibre Optic Cable Using a Dye Laser

ERIC Educational Resources Information Center

Zorba, Serkan; Farah, Constantine; Pant, Ravi

2010-01-01

An advanced undergraduate laboratory experiment is outlined which uses a dye laser to map out the chromatic dispersion curve of a polymethyl methacrylate (PMMA) optical fibre. Seven different wavelengths across the visible spectrum are employed using five different dyes. The light pulse is split into two pulses, one to a nearby photodetector and…

Image analysis method for the measurement of water saturation in a two-dimensional experimental flow tank

NASA Astrophysics Data System (ADS)

Belfort, Benjamin; Weill, Sylvain; Lehmann, François

2017-07-01

A novel, non-invasive imaging technique is proposed that determines 2D maps of water content in unsaturated porous media. This method directly relates digitally measured intensities to the water content of the porous medium. This method requires the classical image analysis steps, i.e., normalization, filtering, background subtraction, scaling and calibration. The main advantages of this approach are that no calibration experiment is needed, because calibration curve relating water content and reflected light intensities is established during the main monitoring phase of each experiment and that no tracer or dye is injected into the flow tank. The procedure enables effective processing of a large number of photographs and thus produces 2D water content maps at high temporal resolution. A drainage/imbibition experiment in a 2D flow tank with inner dimensions of 40 cm × 14 cm × 6 cm (L × W × D) is carried out to validate the methodology. The accuracy of the proposed approach is assessed using a statistical framework to perform an error analysis and numerical simulations with a state-of-the-art computational code that solves the Richards' equation. Comparison of the cumulative mass leaving and entering the flow tank and water content maps produced by the photographic measurement technique and the numerical simulations demonstrate the efficiency and high accuracy of the proposed method for investigating vadose zone flow processes. Finally, the photometric procedure has been developed expressly for its extension to heterogeneous media. Other processes may be investigated through different laboratory experiments which will serve as benchmark for numerical codes validation.

Characterization of the intragranular water regime within subsurface sediments: Pore volume, surface area, and mass transfer limitations

USGS Publications Warehouse

Hay, M.B.; Stoliker, D.L.; Davis, J.A.; Zachara, J.M.

2011-01-01

Although "intragranular" pore space within grain aggregates, grain fractures, and mineral surface coatings may contain a relatively small fraction of the total porosity within a porous medium, it often contains a significant fraction of the reactive surface area, and can thus strongly affect the transport of sorbing solutes. In this work, we demonstrate a batch experiment procedure using tritiated water as a high-resolution diffusive tracer to characterize the intragranular pore space. The method was tested using uranium-contaminated sediments from the vadose and capillary fringe zones beneath the former 300A process ponds at the Hanford site (Washington). Sediments were contacted with tracers in artificial groundwater, followed by a replacement of bulk solution with tracer-free groundwater and the monitoring of tracer release. From these data, intragranular pore volumes were calculated and mass transfer rates were quantified using a multirate first-order mass transfer model. Tritium-hydrogen exchange on surface hydroxyls was accounted for by conducting additional tracer experiments on sediment that was vacuum dried after reaction. The complementary ("wet" and "dry") techniques allowed for the simultaneous determination of intragranular porosity and surface area using tritium. The Hanford 300A samples exhibited intragranular pore volumes of ???1% of the solid volume and intragranular surface areas of ???20%-35% of the total surface area. Analogous experiments using bromide ion as a tracer yielded very different results, suggesting very little penetration of bromide into the intragranular porosity. Copyright 2011 by the American Geophysical Union.

Characterization of the intragranular water regime within subsurface sediments: pore volume, surface area, and mass transfer limitations

USGS Publications Warehouse

Hay, Michael B.; Stoliker, Deborah L.; Davis, James A.; Zachara, John M.

2011-01-01

Although "intragranular" pore space within grain aggregates, grain fractures, and mineral surface coatings may contain a relatively small fraction of the total porosity within a porous medium, it often contains a significant fraction of the reactive surface area, and can thus strongly affect the transport of sorbing solutes. In this work, we demonstrate a batch experiment procedure using tritiated water as a high-resolution diffusive tracer to characterize the intragranular pore space. The method was tested using uranium-contaminated sediments from the vadose and capillary fringe zones beneath the former 300A process ponds at the Hanford site (Washington). Sediments were contacted with tracers in artificial groundwater, followed by a replacement of bulk solution with tracer-free groundwater and the monitoring of tracer release. From these data, intragranular pore volumes were calculated and mass transfer rates were quantified using a multirate first-order mass transfer model. Tritium-hydrogen exchange on surface hydroxyls was accounted for by conducting additional tracer experiments on sediment that was vacuum dried after reaction. The complementary ("wet" and "dry") techniques allowed for the simultaneous determination of intragranular porosity and surface area using tritium. The Hanford 300A samples exhibited intragranular pore volumes of ~1% of the solid volume and intragranular surface areas of ~20%–35% of the total surface area. Analogous experiments using bromide ion as a tracer yielded very different results, suggesting very little penetration of bromide into the intragranular porosity.

Improved Dye Stability in Single-Molecule Fluorescence Experiments

NASA Astrophysics Data System (ADS)

EcheverrÍa Aitken, Colin; Marshall, R. Andrew; Pugi, Joseph D.

Complex biological systems challenge existing single-molecule methods. In particular, dye stability limits observation time in singlemolecule fluorescence applications. Current approaches to improving dye performance involve the addition of enzymatic oxygen scavenging systems and small molecule additives. We present an enzymatic oxygen scavenging system that improves dye stability in single-molecule experiments. Compared to the currently-employed glucose-oxidase/catalase system, the protocatechuate-3,4-dioxygenase system achieves lower dissolved oxygen concentration and stabilizes single Cy3, Cy5, and Alexa488 fluorophores. Moreover, this system possesses none of the limitations associated with the glucose oxidase/catalase system. We also tested the effects of small molecule additives in this system. Biological reducing agents significantly destabilize the Cy5 fluorophore as a function of reducing potential. In contrast, anti-oxidants stabilize the Cy3 and Alexa488 fluorophores. We recommend use of the protocatechuate-3,4,-dioxygenase system with antioxidant additives, and in the absence of biological reducing agents. This system should have wide application to single-molecule fluorescence experiments.

Use of dyes in cariology.

PubMed

van de Rijke, J W

1991-04-01

The property of dyes to enhance contrast by their colour can be used in clinical dentistry and in investigations in vitro or in vivo. They have been used for indication of affected dental tissues, improvement of diagnostic methods, enhancement of patient awareness and information about specific processes. The development of particular dye systems, aimed at clinical application, is often laborious because of toxic effects, lack of specificity, irreversible staining or difficulties with removal of the dye. Clinically used dyes are often visually observed, which means a qualitative assessment of the staining, while quantification of the staining, if performed at all, is confined mostly to laboratory experiments. In this paper the application of dyes, arranged according to their specific purpose in cariology, is discussed, and a brief historical overview is given of the development of two particular dye applications for which commercial dye systems are now available. If certain requirements are met, dyes can be of great help in detection and quantification when used with several diagnostic methods.

Effect of different transport observations on inverse modeling results: case study of a long-term groundwater tracer test monitored at high resolution

NASA Astrophysics Data System (ADS)

Rasa, Ehsan; Foglia, Laura; Mackay, Douglas M.; Scow, Kate M.

2013-11-01

Conservative tracer experiments can provide information useful for characterizing various subsurface transport properties. This study examines the effectiveness of three different types of transport observations for sensitivity analysis and parameter estimation of a three-dimensional site-specific groundwater flow and transport model: conservative tracer breakthrough curves (BTCs), first temporal moments of BTCs ( m 1), and tracer cumulative mass discharge ( M d) through control planes combined with hydraulic head observations ( h). High-resolution data obtained from a 410-day controlled field experiment at Vandenberg Air Force Base, California (USA), have been used. In this experiment, bromide was injected to create two adjacent plumes monitored at six different transects (perpendicular to groundwater flow) with a total of 162 monitoring wells. A total of 133 different observations of transient hydraulic head, 1,158 of BTC concentration, 23 of first moment, and 36 of mass discharge were used for sensitivity analysis and parameter estimation of nine flow and transport parameters. The importance of each group of transport observations in estimating these parameters was evaluated using sensitivity analysis, and five out of nine parameters were calibrated against these data. Results showed the advantages of using temporal moment of conservative tracer BTCs and mass discharge as observations for inverse modeling.

Removal of microbial pathogens in a sandy gravel aquifer under forced-gradient subsurface flow conditions

NASA Astrophysics Data System (ADS)

Oudega, Thomas James; Derx, Julia; van Driezum, Inge; Cisneros, Anibal; Sommer, Regina; Kirschner, Alexander; Farnleitner, Andreas; Blaschke, Alfred Paul

2017-04-01

Subsurface media are being used around the world as a means to mitigate microbial contamination, but vary widely in their ability to remove pathogens. To help to provide accurate risk assessments of microbial contamination of groundwaters, and establish safe setback distances between receiving waters and disposal fields, this study aims to use aquifer tracer tests to evaluate the ability of subsurface media to attenuate these pathogens. The novelty of this work is the use of a variety of different tracer substances (e.g. phages, spores, microspheres, conservative tracers) together in field experiments. This will be done by means of injecting these substances under a forced gradient in a sandy gravel aquifer in Lobau, Austria. The extraction of the tracers will be monitored in a pumping well at a distrance of 50m downgradient. This will be able to provide us with insight to the characteristics of microbial transport and how the microorganisms react to the subsurface in the study site. Subsequent numerical modelling of the experiments can tell us more about quantification of subsurface processes such as attachment/detachment, inactivation and die-off of these substances. The first field experiment with conservative tracers (NaCl) has been carried out in December 2016, and subsequent tests are being planned for the next months.

Modelling rapid subsurface flow at the hillslope scale with explicit representation of preferential flow paths

NASA Astrophysics Data System (ADS)

Wienhöfer, J.; Zehe, E.

2012-04-01

Rapid lateral flow processes via preferential flow paths are widely accepted to play a key role for rainfall-runoff response in temperate humid headwater catchments. A quantitative description of these processes, however, is still a major challenge in hydrological research, not least because detailed information about the architecture of subsurface flow paths are often impossible to obtain at a natural site without disturbing the system. Our study combines physically based modelling and field observations with the objective to better understand how flow network configurations influence the hydrological response of hillslopes. The system under investigation is a forested hillslope with a small perennial spring at the study area Heumöser, a headwater catchment of the Dornbirnerach in Vorarlberg, Austria. In-situ points measurements of field-saturated hydraulic conductivity and dye staining experiments at the plot scale revealed that shrinkage cracks and biogenic macropores function as preferential flow paths in the fine-textured soils of the study area, and these preferential flow structures were active in fast subsurface transport of artificial tracers at the hillslope scale. For modelling of water and solute transport, we followed the approach of implementing preferential flow paths as spatially explicit structures of high hydraulic conductivity and low retention within the 2D process-based model CATFLOW. Many potential configurations of the flow path network were generated as realisations of a stochastic process informed by macropore characteristics derived from the plot scale observations. Together with different realisations of soil hydraulic parameters, this approach results in a Monte Carlo study. The model setups were used for short-term simulation of a sprinkling and tracer experiment, and the results were evaluated against measured discharges and tracer breakthrough curves. Although both criteria were taken for model evaluation, still several model setups produced acceptable matches to the observed behaviour. These setups were selected for long-term simulation, the results of which were compared against water level measurements at two piezometers along the hillslope and the integral discharge response of the spring to reject some non-behavioural model setups and further reduce equifinality. The results of this study indicate that process-based modelling can provide a means to distinguish preferential flow networks on the hillslope scale when complementary measurements to constrain the range of behavioural model setups are available. These models can further be employed as a virtual reality to investigate the characteristics of flow path architectures and explore effective parameterisations for larger scale applications.

Exploring Microbial Processes with Thermal-Hydrological Models of the Eastern Flank of the Juan de Fuca Ridge

NASA Astrophysics Data System (ADS)

Weathers, T. S.; Fisher, A. T.; Winslow, D. M.; Stauffer, P. H.; Gable, C. W.

2017-12-01

The flanks of mid-ocean ridges experience coupled flows of fluid, heat, and solutes that are critical for a wide range of global processes, including the cycling of carbon and nutrients, which supports a vast crustal biosphere. Only a few ridge-flank sites have been studied in detail; hydrogeologic conditions and processes in the volcanic crust are best understood on the eastern flank of the Juan de Fuca Ridge. This area has been extensively explored with decades of drilling, submersible, observatory, and survey expeditions and experiments, including the first hole-to-hole tracer injection experiment in the ocean crust. This study describes the development of reactive transport simulations for this ridge-flank setting using three-dimensional coupled (thermal-hydrological) models of crustal-scale circulation, beginning with the exploration of tracer transport. The prevailing flow direction is roughly south to north as a result of outcrop-to-outcrop flow, with a bulk flow rate in the range of meters/year. However, tracer was detected 500 m south ("upstream") from the injection borehole during the first year following injection. This may be explained by local mixing and/or formation fluid discharge from the southern borehole during and after injection. The constraints and parameters required to fit the observed tracer behavior can be used as a basis for modeling reactive transport processes such as nutrient delivery or microbial community evolution as a function of fluid flow. For example, the sulfate concentration in fluid samples from Baby Bare outcrop ( 8 km south of the tracer transport experiment) was 17.8 mmol/kg, whereas at Mama Bare outcrop ( 8 km to north of the tracer transport experiment) the sulfate concentration was 16.3 mmol/mg. By integrating laboratory-derived sulfate reduction rates from microbial samples originating from Juan de Fuca borehole observatories into reactive transport models, we can explore the range of microbial activity that supports the observed concentration gradients of sulfate and other solutes in the volcanic ocean crust.

Investigation of decolorization of textile wastewater in an anaerobic/aerobic biological activated carbon system (A/A BAC).

PubMed

Pasukphun, N; Vinitnantharat, S; Gheewala, S

2010-04-01

The aim of this study is to investigate the decolorization in anaerobic/aerobic biological activated carbon (A/A BAC) system. The experiment was divided into 2 stages; stage I is batch test for preliminary study of dye removal equilibrium time. The preliminary experiment (stage I) provided the optimal data for experimental design of A/A BAC system in SBR (stage II). Stage II is A/A BAC system imitated Sequencing Batch Reactor (SBR) which consist of 5 main periods; fill, react, settle, draw and idle. React period include anaerobic phase followed by aerobic phase. The BAC main media; Granular Activated Carbon (GAC), Mixed Cultures (MC) and Biological Activated Carbon (BAC) were used for dye and organic substances removal in three different solutions; Desizing Agent Solution (DAS), dye Solution (DS) and Synthetic Textile Wastewater (STW). Results indicate that GAC adsorption plays role in dye removal followed by BAC and MC activities, respectively. In the presence desizing agent, decolorization by MC was improved because desizing agent acts as co-substrates for microorganisms. It was found that 50% of dye removal efficiency was achieved in Fill period by MC. GC/MS analysis was used to identify dye intermediate from decolorization. Dye intermediate containing amine group was found in the solution and on BAC surfaces. The results demonstrated that combination of MC and BAC in the system promotes decolorization and dye intermediate removal. In order to improve dye removal efficiency in an A/A BAC system, replacement of virgin GAC, sufficient co-substrates supply and the appropriate anaerobic: aerobic period should be considered.

Preferential flow and pesticide transport in a clay-rich till: Field, laboratory, and modeling analysis

NASA Astrophysics Data System (ADS)

JøRgensen, Peter R.; Hoffmann, Martin; Kistrup, Jens P.; Bryde, Claus; Bossi, Rossana; Villholth, Karen G.

2002-11-01

This study investigates vertical flow and pesticide transport along fractures in water saturated unoxidized clayey till. From two experimental fields, each 40 m2, 96% and 98%, respectively, of total vertical flow was conducted along fractures in the till, while the remaining 2-4% of flow occurred in the clay matrix at very slow flow rate. An applied dye tracer was observed only along 10-26% of the total fracture length measured on the horizontal surface of the experimental fields. In vertical sections the dyed fracture portions constituted root channels, which penetrated the till vertically along the fractures into the local aquifer at 5 m depth. No dye tracer was observed in the fractures without root channels or in the unfractured clay matrix, suggesting that root growth along the fracture surfaces was the principal agent of fracture aperture enhancement. Using hydraulic fracture aperture values determined from large undisturbed column (LUC) collected from one of the experimental fields, it was estimated that 94% of flow in the fractures was conducted along the fracture root channels, while only 6% of flow was conducted along the fracture sections without root channels. For natural vertical hydraulic gradients (0.8-2.3 at the site), flow rates of 0.8-2 km/d were determined for a fracture root channel, while fracture sections without root channels revealed flow rates of 9-22 m/d. Corresponding flow rates in the unfractured matrix were 7-19 mm/yr. For infiltrated bromide (nonreactive tracer) and mobile pesticides mecoprop (MCPP) and metsulfuron, very rapid migration (0.28-0.5 m/d) and high relative breakthrough concentrations (30-60%) into the aquifer were observed to occur along the fracture root channels using a constant hydraulic gradient of 1. Only traces were measured from infiltration of the strongly sorbed pesticide prochloraz. The concentrations of the bromide and pesticides in the monitoring wells were modeled with a discrete fracture matrix diffusion (DFDM) model coupled with a single porosity model (SP) for the till and aquifer, respectively. Using effective fracture spacings and mean fracture apertures for the fracture channel sections as modeling input parameters for the till, the concentrations observed in the wells of the aquifer could be reasonably approximated.

Synthesis and spectroscopic properties of silica-dye-semiconductor nanocrystal hybrid particles.

PubMed

Ren, Ting; Erker, Wolfgang; Basché, Thomas; Schärtl, Wolfgang

2010-12-07

We prepared silica-dye-nanocrystal hybrid particles and studied the energy transfer from semiconductor nanocrystals (= donor) to organic dye molecules (= acceptor). Multishell CdSe/CdS/ZnS semiconductor nanocrystals were adsorbed onto monodisperse Stöber silica particles with an outer silica shell of thickness 2-23 nm containing organic dye molecules (Texas Red). The thickness of this dye layer has a strong effect on the energy transfer efficiency, which is explained by the increase in the number of dye molecules homogeneously distributed within the silica shell, in combination with an enhanced surface adsorption of nanocrystals with increasing dye amount. Our conclusions were underlined by comparison of the experimental results with numerically calculated FRET efficiencies and by control experiments confirming attractive interaction between the nanocrystals and Texas Red freely dissolved in solution.

Using Smoke Injection in Drains to Identify Potential Preferential Pathways in a Drained Arable Field

NASA Astrophysics Data System (ADS)

Nielsen, M. H.; Petersen, C. T.; Hansen, S.

2014-12-01

Macropores forming a continuous pathway between the soil surface and subsurface drains favour the transport of many contaminants from agricultural fields to surface waters. The smoke injection method presented by Shipitalo and Gibbs (2000) used for demonstrating and quantifying such pathways has been further developed and used on a drained Danish sandy loam. In order to identify the preferential pathways to drains, smoke was injected in three 1.15 m deep tile drains (total drain length 93 m), and smoke emitting macropores (SEMP) at the soil surface were counted and characterized as producing either strong or weak plumes compared to reference plumes from 3 and 6 mm wide tubes. In the two situations investigated in the present study - an early spring and an autumn situation, smoke only penetrated the soil surface layer via earthworm burrows located in a 1.0 m wide belt directly above the drain lines. However, it is known from previous studies that desiccation fractures in a dry summer situation also can contribute to the smoke pattern. The distance between SEMP measured along the drain lines was on average 0.46 m whereas the average spacing between SEMP with strong plumes was 2.3 m. Ponded water was applied in 6 cm wide rings placed above 52 burrows including 17 reference burrows which did not emit smoke. Thirteen pathways in the soil were examined using dye tracer and profile excavation. SEMP with strong plumes marked the entrance of highly efficient transport pathways conducting surface applied water and dye tracer into the drain. However, no single burrow was traced all the way from the surface into the drain, the dye patterns branched off in a network of other macropores. Water infiltration rates were significantly higher (P < 0.05) in SEMP with strong plumes (average rate: 247 mL min-1 n = 19) compared to SEMP with weak plumes (average rate: 87 mL min-1 n = 16) and no plumes (average rate: 56 mL min-1 n = 17). The results suggest that the smoke injection method is useful for identification of potentially efficient pathways for surface applied contaminants to drains and surface waters, pathways being associated primarily with unevenly distributed SEMP producing strong smoke plumes.

Image analysis method for the measurement of water saturation in a two-dimensional experimental flow tank

NASA Astrophysics Data System (ADS)

Belfort, Benjamin; Weill, Sylvain; Lehmann, François

2017-04-01

A novel, non-invasive imaging technique that determines 2D maps of water content in unsaturated porous media is presented. This method directly relates digitally measured intensities to the water content of the porous medium. This method requires the classical image analysis steps, i.e., normalization, filtering, background subtraction, scaling and calibration. The main advantages of this approach are that no calibration experiment is needed and that no tracer or dye is injected into the flow tank. The procedure enables effective processing of a large number of photographs and thus produces 2D water content maps at high temporal resolution. A drainage / imbibition experiment in a 2D flow tank with inner dimensions of 40 cm x 14 cm x 6 cm (L x W x D) is carried out to validate the methodology. The accuracy of the proposed approach is assessed using numerical simulations with a state-of-the-art computational code that solves the Richards. Comparison of the cumulative mass leaving and entering the flow tank and water content maps produced by the photographic measurement technique and the numerical simulations demonstrate the efficiency and high accuracy of the proposed method for investigating vadose zone flow processes. Application examples to a larger flow tank with various boundary conditions are finally presented to illustrate the potential of the methodology.

Fluorescein Dye Penetration in Round Top Rhyolite (Hudspeth County, Texas, USA) to Reveal Micro-permeability and Optimize Grain Size for Heavy REE Heap Leach

NASA Astrophysics Data System (ADS)

Negron, L. M.; Clague, J. W.; Gorski, D.; Amaya, M. A.; Pingitore, N. E.

2013-12-01

Millimeter- and micrometer-scale permeability of fine-grained igneous rocks has generated limited research interest. Nonetheless, the scale and distribution of such micro-permeability determines fluid penetration and pathways, parameters that define both the ability to heap leach a rock and the optimal grain size for such an operation. Texas Rare Earth Resources is evaluating the possibility of heap leaching of yttrium and heavy rare earth elements (YHREE) from the peraluminous rhyolite laccolith that forms one-mile-diameter Round Top Mountain. The YHREEs in this immense, surface-exposed deposit (minimum 1.6 billion tons, Texas Bureau Economic Geology) are dilute and diffuse, suggesting leaching as the best option for recovery. The REE grade is 0.05% and YHREEs comprise more than 70% of the total REE content. The YHREEs are hosted exclusively in micron-scale yttrofluorite grains, which proved soluble in dilute sulfuric acid. Laboratory experiments showed YHREE recoveries of up to 90%. Within limits, recoveries decrease with larger grain sizes, and increase with acid strength and exposure time. Our research question centers on dissolution effectiveness: Is YHREE recovery, relative to grain size, limited by (1) diffusion time of acid into, and dissolved solids, including YHREEs, out of the micro-permeability paths inherent in the rock particles; (2) the effective lengths of the natural micro-permeability paths in the rock; or (3) the putative role of the acid in dissolving new micro-paths into the grains? The maximum grain size should not exceed twice the typical path length (unless acid creates new paths), lest YHREEs in the core of a larger grain than that not be reached by acid. If instead diffusion time is limiting, longer leach time may prove effective. Rather than perform an extensive and expensive series of laboratory leaching experiments--some of which would be several months in duration--to determine optimal grain size, we developed a technique to efficiently determine the limits of penetration of water into the rhyolite. We cut parallel-sided slabs of Round Top rhyolite at staged thickness up to 10 mm. We then wet one side and view the opposite side over time under UV light to detect breakthrough of the fluorescein dye. Because of its extremely low visual detection limits, well below the ppm level, the dye has been widely used in biochemical research, as a tracer in surface and ground water studies, in delineating invisible cracks in such structural material as motor blocks, and in detecting corneal abrasions. We have been successful in detecting breakthrough at different rhyolite thicknesses. Continuing studies focus on mapping of the 2-dimensional distribution of the permeability via hand lens and low-power microscope; use of visible light dyes; and examination of specimens pre- and post-acid leaching to determine whether acid exposure produced significant new micro-permeability.

Isopycnal diffusivity in the tropical North Atlantic oxygen minimum zone

NASA Astrophysics Data System (ADS)

Köllner, Manuela; Visbeck, Martin; Tanhua, Toste; Fischer, Tim

2017-04-01

Isopycnal diffusivity plays an important role in the ventilation of the Eastern Tropical North Atlantic (ETNA) Oxygen Minimum Zone (OMZ). Lateral tracer transport is described by isopycnal diffusivity and mean advection of the tracer (e.g. oxygen), together they account for up to 70% of the oxygen supply for the OMZ. One of the big challenges is to separate diffusivity from advection. Isopycnal diffusivity was estimated to be Ky=(500 ± 200) m2 s-1 and Kx=(1200 ± 600) m2 s-1 by Banyte et. al (2013) from a Tracer Release Experiment (TRE). Hahn et al. (2014) estimated a meridional eddy diffusivity of 1350 m2 s-1 at 100 m depth decaying to less than 300 m2 s-1 below 800 m depth from repeated ship sections of CTD and ADCP data in addition with hydrographic mooring data. Uncertainties of the estimated diffusivities were still large, thus the Oxygen Supply Tracer Release Experiment (OSTRE) was set up to estimate isopycnal diffusivity in the OMZ using a newly developed sampling strategy of a control volume. The tracer was released in 2012 in the core of the OMZ at approximately 410 m depth and mapped after 6, 15 and 29 months in a regular grid. In addition to the calculation of tracer column integrals from vertical tracer profiles a new sampling method was invented and tested during two of the mapping cruises. The mean eddy diffusivity during OSTRE was found to be about (300 ± 130) m2 s-1. Additionally, the tracer has been advected further to the east and west by zonal jets. We compare different analysis methods to estimate isopycnal diffusivity from tracer spreading and show the advantage of the control volume surveys and control box approach. From the control box approach we are estimating the strength of the zonal jets within the OMZ core integrated over the TRE time period. References: Banyte, D., Visbeck, M., Tanhua, T., Fischer, T., Krahmann, G.,Karstensen, J., 2013. Lateral Diffusivity from Tracer Release Experiments in the Tropical North Atlantic Thermocline. Journal of Geophysical Research 118. Hahn, J., Brandt, P., Greatbatch, R., Krahmann, G., Körtzinger, A., 2014. Oxygen variance and meridional oxygen supply in the Tropical North East Atlantic oxygen minimum zone. Climate Dynamics 43, 2999-3024.

Natural and Artificial (fluorescent) Tracers to Characterise Hydrogeological Functioning and to Protect Karst Aquifers

NASA Astrophysics Data System (ADS)

Andreo, B.; Mudarra, M.; Marin, A. I.; Barberá, J. A.

2012-12-01

The hydrogeological functioning and response of karst aquifers can be determined by the joint use of natural hydrogeochemical tracers, especially total organic carbon (TOC) and intrinsic fluorescence of water, together with artificial (fluorescent) tracers, under the same hydrodynamic conditions. Sharp and rapid variations in discharge, temperature, electrical conductivity and water chemistry, particularly of natural tracers of infiltration (TOC, intrinsic fluorescence and NO3-) recorded in karst spring water, confirm the existence of well developed karst conduits in the sector of the aquifer being drained, with rapid flows and very short water transit times from the surface to the springs (Mudarra et al., 2011). This is in agreement with the evidence obtained from breakthrough curves of fluorescent dye tracers (uranine, eosine, etc.). However, time lags between maximum concentrations of natural (especially TOC and intrinsic fluorescence) and artificial tracers show that the global system response is faster than that produced from a recharge concentrated at a point on the surface, even in karst sinkholes. Response and transit times of water through the karst can be calculated using both natural and artificial tracers, but flow velocities can really only be quantified using artificial tracers. Analysis of the responses obtained by natural tracers of infiltration (global system response) and artificial tracers (single response) in karst waters has revealed the usefulness and complementarity of both techniques for characterising the hydrogeological functioning of karst aquifers and, even more important, for validating contamination vulnerability mapping in these medium (Zwahlen, 2004; Andreo et al., 2006). In recent decades, several methods have been developed for such vulnerability mapping, but little progress has been made in validating their results. This validation is essential for the adequate protection of water resources in karst media, as has been shown in recent research (Marin et al., 2012; Ravbar et al., 2012). References: Andreo B, Goldscheider N, Vadillo I, Vías JM, Neukum C, Sinreich M, Jiménez P, Brechenmacher J, Carrasco F, Hötzl H, Perles MJ, Zwahlen F (2006a): Karst groundwater protection: First application of a Pan-European Approach to vulnerability, hazard and risk mapping in the Sierra de Líbar (Southern Spain). Science of the Total Environment, 357 1-3: 54-73. Marín AI, Andreo B and Dörfliger N (2012): Comparative application of two methods (COP and PaPRIKa) for groundwater vulnerability mapping in Mediterranean karst aquifers (France and Spain). Environmental Earth Sciences, 65: 2407-2421. Mudarra M, Andreo B and Baker A (2011): Characterisation of dissolved organic matter in karst spring waters using intrinsic fluorescence: Relationship with infiltration processes. Science of Total Environment, 40: 3448-3462. Ravbar N, Barberá JA, Petric M, Kogovsek J and Andreo B (2012): Study of hydrodynamic behaviour of a complex karst system under low-flow conditions using natural and artificial tracers (springs of the Unica River, SW Slovenia Environmental Earth Sciences, 65: 2259-2272. Zwahlen F -Editor- (2004). Vulnerability and risk mapping for the protection of carbonate (karst) aquifers, final report (COST action 620). - European Commission, Directorate-General XII Science, Research and Development: 297 pp.

Accurate distance determination of nucleic acids via Förster resonance energy transfer: implications of dye linker length and rigidity.

PubMed

Sindbert, Simon; Kalinin, Stanislav; Nguyen, Hien; Kienzler, Andrea; Clima, Lilia; Bannwarth, Willi; Appel, Bettina; Müller, Sabine; Seidel, Claus A M

2011-03-02

In Förster resonance energy transfer (FRET) experiments, the donor (D) and acceptor (A) fluorophores are usually attached to the macromolecule of interest via long flexible linkers of up to 15 Å in length. This causes significant uncertainties in quantitative distance measurements and prevents experiments with short distances between the attachment points of the dyes due to possible dye-dye interactions. We present two approaches to overcome the above problems as demonstrated by FRET measurements for a series of dsDNA and dsRNA internally labeled with Alexa488 and Cy5 as D and A dye, respectively. First, we characterize the influence of linker length and flexibility on FRET for different dye linker types (long, intermediate, short) by analyzing fluorescence lifetime and anisotropy decays. For long linkers, we describe a straightforward procedure that allows for very high accuracy of FRET-based structure determination through proper consideration of the position distribution of the dye and of linker dynamics. The position distribution can be quickly calculated with geometric accessible volume (AV) simulations, provided that the local structure of RNA or DNA in the proximity of the dye is known and that the dye diffuses freely in the sterically allowed space. The AV approach provides results similar to molecular dynamics simulations (MD) and is fully consistent with experimental FRET data. In a benchmark study for ds A-RNA, an rmsd value of 1.3 Å is achieved. Considering the case of undefined dye environments or very short DA distances, we introduce short linkers with a propargyl or alkenyl unit for internal labeling of nucleic acids to minimize position uncertainties. Studies by ensemble time correlated single photon counting and single-molecule detection show that the nature of the linker strongly affects the radius of the dye's accessible volume (6-16 Å). For short propargyl linkers, heterogeneous dye environments are observed on the millisecond time scale. A detailed analysis of possible orientation effects (κ(2) problem) indicates that, for short linkers and unknown local environments, additional κ(2)-related uncertainties are clearly outweighed by better defined dye positions.

Low frequency sonochemical synthesis of nanoporous amorphous manganese dioxide (MnO2) and adsorption of remazol reactive dye

NASA Astrophysics Data System (ADS)

Hasan, Siti Zubaidah; Yusop, Muhammad Rahimi; Othman, Mohamed Rozali

2015-09-01

Nanoporous amorphous-MnO2 was synthesized by sonochemical process (sonication) on the solid manganese (II) acetate tetrahydrate (Mn(CH3COO)2.4H2O) in 0.1 M KMnO4. The product was characterized by X-ray diffraction (XRD), morphology of the material was scanned by Field Emission Scanning Electron Microscopy (FE-SEM) and absorptions of MnO2 bonding was characterized by Fourier Transform Infra-Red Spectrometer (FT-IR). Remazol reactive dye or Red 3BS, was used in the adsorption study using nanoporous amorphous-MnO2. In batch experiment, 10 ppm of Remazol reactive dye was used and experiment was carried out at room temperature. Adsorption of Remazol dye on 0.2g synthesized nanoporous amorphous-MnO2 showed 99 - 100% decolorization.

CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data.

PubMed

Bray, Mark-Anthony; Carpenter, Anne E

2015-11-04

Time-lapse analysis of cellular images is an important and growing need in biology. Algorithms for cell tracking are widely available; what researchers have been missing is a single open-source software package to visualize standard tracking output (from software like CellProfiler) in a way that allows convenient assessment of track quality, especially for researchers tuning tracking parameters for high-content time-lapse experiments. This makes quality assessment and algorithm adjustment a substantial challenge, particularly when dealing with hundreds of time-lapse movies collected in a high-throughput manner. We present CellProfiler Tracer, a free and open-source tool that complements the object tracking functionality of the CellProfiler biological image analysis package. Tracer allows multi-parametric morphological data to be visualized on object tracks, providing visualizations that have already been validated within the scientific community for time-lapse experiments, and combining them with simple graph-based measures for highlighting possible tracking artifacts. CellProfiler Tracer is a useful, free tool for inspection and quality control of object tracking data, available from http://www.cellprofiler.org/tracer/.

Optical study of active ion transport in lipid vesicles containing reconstituted Na,K-ATPase.

PubMed

Apell, H J; Marcus, M M; Anner, B M; Oetliker, H; Läuger, P

1985-01-01

A fluorescence method is described for the measurement of ATP-driven ion fluxes in lipid vesicles containing purified Na,K-ATPase. The membrane voltage of enzyme containing vesicles was measured by using a voltage-sensitive indocyanine dye. By addition of valinomycin the vesicle membrane is made selectively permeable to K+ so that the membrane voltage approaches the Nernst potential for K+. With constant external K+ concentration, the time course of internal K+ concentration can be continuously measured as change of the fluorescence signal after activation of the pump. The optical method has a higher time resolution than tracer-flux experiments and allows an accurate determination of initial flux rates. From the temperature dependence of active K+ transport its activation energy was determined to be 115 kJ/mol. ATP-stimulated electrogenic pumping can be measured as fast fluorescence change when the membrane conductance is low (i.e., at low or zero valinomycin concentration). In accordance with expectation, the amplitude of the fast signal change increases with decreasing passive ion permeability of the vesicle membrane. The resolution of the charge movement is so high that a few pump turnovers can be easily detected.

Third-order nonlinear optical properties of organic azo dyes by using strength of nonlinearity parameter and Z-scan technique

NASA Astrophysics Data System (ADS)

Motiei, H.; Jafari, A.; Naderali, R.

2017-02-01

In this paper, two chemically synthesized organic azo dyes, 2-(2,5-Dichloro-phenyazo)-5,5-dimethyl-cyclohexane-1,3-dione (azo dye (i)) and 5,5-Dimethyl-2-tolylazo-cyclohexane-1,3-dione (azo dye (ii)), have been studied from optical Kerr nonlinearity point of view. These materials were characterized by Ultraviolet-visible spectroscopy. Experiments were performed using a continous wave diode-pumped laser at 532 nm wavelength in three intensities of the laser beam. Nonlinear absorption (β), refractive index (n2) and third-order susceptibility (χ (3)) of dyes, were calculated. Nonlinear absorption coefficient of dyes have been calculated from two methods; 1) using theoretical fits and experimental data in the Z-scan technique, 2) using the strength of nonlinearity curves. The values of β obtained from both of the methods were approximately the same. The results demonstrated that azo dye (ii) displays better nonlinearity and has a lower two-photon absorption threshold than azo dye (i). Calculated parameter related to strength of nonlinearity for azo dye (ii) was higher than azo dye (i), It may be due to presence of methyl in azo dye (ii) instead of chlorine in azo dye (i). Furthermore, The measured values of third order susceptibility of azo dyes were from the order of 10-9 esu . These azo dyes can be suitable candidate for optical switching devices.

The Experience of Receiving and Then Losing a Scholarship: A Tracer Study of Secondary School Scholarship Recipients in Uganda

ERIC Educational Resources Information Center

Watson, Cathy; Chapman, David W.; Okurut, Charles Opolot

2014-01-01

This study reports findings of a tracer that investigated differences in the profile and subsequent experiences of scholarship recipients in Uganda who were able to complete the lower secondary school cycle (O level) without interruption (N = 174) and those that dropped out before completing their O-level cycle (N = 51), thereby losing their…

Journal: A Review of Some Tracer-Test Design Equations for ...

EPA Pesticide Factsheets

Determination of necessary tracer mass, initial sample-collection time, and subsequent sample-collection frequency are the three most difficult aspects to estimate for a proposed tracer test prior to conducting the tracer test. To facilitate tracer-mass estimation, 33 mass-estimation equations are reviewed here, 32 of which were evaluated using previously published tracer-test design examination parameters. Comparison of the results produced a wide range of estimated tracer mass, but no means is available by which one equation may be reasonably selected over the others. Each equation produces a simple approximation for tracer mass. Most of the equations are based primarily on estimates or measurements of discharge, transport distance, and suspected transport times. Although the basic field parameters commonly employed are appropriate for estimating tracer mass, the 33 equations are problematic in that they were all probably based on the original developers' experience in a particular field area and not necessarily on measured hydraulic parameters or solute-transport theory. Suggested sampling frequencies are typically based primarily on probable transport distance, but with little regard to expected travel times. This too is problematic in that tends to result in false negatives or data aliasing. Simulations from the recently developed efficient hydrologic tracer-test design methodology (EHTD) were compared with those obtained from 32 of the 33 published tracer-

REDUCTION OF DOSES IN DIAGNOSTIC USES OF RADIOISOTOPES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hosain, F.

1960-03-01

> A moderately low-level counting technique with anticoincidence gas- flow counter was developed for use in metabolic and diagnostic tracer studies with radioisotopes. Several important experiments and results were reported which have been carried out with reduced doses of tracer isotopes. A reduction of the tracer dose of ahout 1/30th of the present conventional doses was achieved which helps to minimize the chances of radiation hazards. (auth)

Comparison of gadopentetic acid (Gd-DTPA) and bromide in a dual-tracer field experiment

NASA Astrophysics Data System (ADS)

Dulski, Peter; Möller, Peter; Pekdeger, Asaf

2011-06-01

At a test site consisting of a storage pond and connected artificial aquifer, the long-time behaviour of gadopentetic acid (Gd-DTPA) was compared with the classic tracer bromide (Br-) in a 70-day dual-tracer experiment. The mixed tracer solution was injected into the oligotrophic pond, which is separated from the aquifer by an infiltration bank. The water drained from the aquifer was returned to the pond together with additional fresh groundwater, causing reduced concentrations of Gd-DTPA and Br- in the system. Transmetallation of Gd-DTPA by rare earth elements and yttrium was negligible but Cu2+ and Ni2+ might have played a role. Adsorption and/or biodegradation of Gd-DTPA were negligible. The decline of Gd-DTPA/Br ratios by 18% in the pond over 68 days was caused by reversible sorption of Br- in the aquifer, which caused variation of Br- background. Thus, Br- behaves less conservatively than Gd-DTPA in the aquifer. Comparison of both proves the suitability of Gd-chelates as tracers in hydrological studies. The advantage of Gd-DTPA as a tracer is that natural Gd3+ in water can continuously be monitored by analysing the suite of naturally occurring rare-earth elements. Thus, stable organic Gd-chelates are determinable with high precision at very low concentrations.

VAPOR-PHASE TRANSPORT OF TRICHLOROETHENE IN AN INTERMEDIATE-SCALE VADOSE-ZONE SYSTEM: RETENTION PROCESSES AND TRACER-BASED PREDICTION

PubMed Central

Costanza-Robinson, Molly S.; Carlson, Tyson D.; Brusseau, Mark L.

2013-01-01

Gas-phase miscible-displacement experiments were conducted using a large weighing lysimeter to evaluate retention processes for volatile organic compounds (VOCs) in water-unsaturated (vadoze-zone) systems, and to test the utility of gas-phase tracers for predicting VOC retardation. Trichloroethene (TCE) served as a model VOC, while trichlorofluoromethane (CFM) and heptane were used as partitioning tracers to independently characterize retention by water and the air-water interface, respectively. Retardation factors for TCE ranged between 1.9 and 3.5, depending on water content. The results indicate that dissolution into the bulk water was the primary retention mechanism for TCE under all conditions studied, contributing approximately two thirds of the total measured retention. Accumulation at the air-water interface comprised a significant fraction of the observed retention for all experiments, with an average contribution of approximately 24%. Sorption to the solid phase contributed approximately 10% to retention. Water contents and air-water interfacial areas estimated based on the CFM and heptane tracer data, respectively, were similar to independently measured values. Retardation factors for TCE predicted using the partitioning-tracer data were in reasonable agreement with the measured values. These results suggest that gas-phase tracer tests hold promise for characterizing the retention and transport of VOCs in the vadose-zone. PMID:23333418

Common mycorrhizal networks provide a potential pathway for the transfer of hydraulically lifted water between plants.

PubMed

Egerton-Warburton, Louise M; Querejeta, José Ignacio; Allen, Michael F

2007-01-01

Plant roots may be linked by shared or common mycorrhizal networks (CMNs) that constitute pathways for the transfer of resources among plants. The potential for water transfer by such networks was examined by manipulating CMNs independently of plant roots in order to isolate the role(s) of ectomycorrhizal (EM) and arbuscular mycorrhizal fungal (AMF) networks in the plant water balance during drought (soil water potential -5.9 MPa). Fluorescent tracer dyes and deuterium-enriched water were used to follow the pathways of water transfer from coastal live oak seedlings (Quercus agrifolia Nee; colonized by EM and AMF) conducting hydraulic lift (HL) into the roots of water-stressed seedlings connected only by EM (Q. agrifolia) or AMF networks (Q. agrifolia, Eriogonum fasciculatum Benth., Salvia mellifera Greene, Keckiella antirrhinoides Benth). When connected to donor plants by hyphal linkages, deuterium was detected in the transpiration flux of receiver oak plants, and dye-labelled extraradical hyphae, rhizomorphs, mantles, and Hartig nets were observed in receiver EM oak roots, and in AMF hyphae of Salvia. Hyphal labelling was scarce in Eriogonum and Keckiella since these species are less dependent on AMF. The observed patterns of dye distribution also indicated that only a small percentage of mycorrhizal roots and extraradical hyphae were involved with water transfer among plants. Our results suggest that the movement of water by CMNs is potentially important to plant survival during drought, and that the functional ecophysiological traits of individual mycorrhizal fungi may be a component of this mechanism.

Hybrid dynamic radioactive particle tracking (RPT) calibration technique for multiphase flow systems

NASA Astrophysics Data System (ADS)

Khane, Vaibhav; Al-Dahhan, Muthanna H.

2017-04-01

The radioactive particle tracking (RPT) technique has been utilized to measure three-dimensional hydrodynamic parameters for multiphase flow systems. An analytical solution to the inverse problem of the RPT technique, i.e. finding the instantaneous tracer positions based upon instantaneous counts received in the detectors, is not possible. Therefore, a calibration to obtain a counts-distance map is needed. There are major shortcomings in the conventional RPT calibration method due to which it has limited applicability in practical applications. In this work, the design and development of a novel dynamic RPT calibration technique are carried out to overcome the shortcomings of the conventional RPT calibration method. The dynamic RPT calibration technique has been implemented around a test reactor with 1foot in diameter and 1 foot in height using Cobalt-60 as an isotopes tracer particle. Two sets of experiments have been carried out to test the capability of novel dynamic RPT calibration. In the first set of experiments, a manual calibration apparatus has been used to hold a tracer particle at known static locations. In the second set of experiments, the tracer particle was moved vertically downwards along a straight line path in a controlled manner. The obtained reconstruction results about the tracer particle position were compared with the actual known position and the reconstruction errors were estimated. The obtained results revealed that the dynamic RPT calibration technique is capable of identifying tracer particle positions with a reconstruction error between 1 to 5.9 mm for the conditions studied which could be improved depending on various factors outlined here.

Field-scale sulfur hexafluoride tracer experiment to understand long distance gas transport in the deep unsaturated zone

USGS Publications Warehouse

Walvoord, Michelle Ann; Andraski, Brian J.; Green, Christopher T.; Stonestrom, David A.; Striegl, Robert G.

2014-01-01

A natural gradient SF6 tracer experiment provided an unprecedented evaluation of long distance gas transport in the deep unsaturated zone (UZ) under controlled (known) conditions. The field-scale gas tracer test in the 110-m-thick UZ was conducted at the U.S. Geological Survey’s Amargosa Desert Research Site (ADRS) in southwestern Nevada. A history of anomalous (theoretically unexpected) contaminant gas transport observed at the ADRS, next to the first commercial low-level radioactive waste disposal facility in the United States, provided motivation for the SF6 tracer study. Tracer was injected into a deep UZ borehole at depths of 15 and 48 m, and plume migration was observed in a monitoring borehole 9 m away at various depths (0.5–109 m) over the course of 1 yr. Tracer results yielded useful information about gas transport as applicable to the spatial scales of interest for off-site contaminant transport in arid unsaturated zones. Modeling gas diffusion with standard empirical expressions reasonably explained SF6 plume migration, but tended to underpredict peak concentrations for the field-scale experiment given previously determined porosity information. Despite some discrepancies between observations and model results, rapid SF6 gas transport commensurate with previous contaminant migration was not observed. The results provide ancillary support for the concept that apparent anomalies in historic transport behavior at the ADRS are the result of factors other than nonreactive gas transport properties or processes currently in effect in the undisturbed UZ.

Response surface methodology for optimization of medium for decolorization of textile dye Direct Black 22 by a novel bacterial consortium.

PubMed

Mohana, Sarayu; Shrivastava, Shalini; Divecha, Jyoti; Madamwar, Datta

2008-02-01

Decolorization and degradation of polyazo dye Direct Black 22 was carried out by distillery spent wash degrading mixed bacterial consortium, DMC. Response surface methodology (RSM) involving a central composite design (CCD) in four factors was successfully employed for the study and optimization of decolorization process. The hyper activities and interactions between glucose concentration, yeast extract concentration, dye concentration and inoculum size on dye decolorization were investigated and modeled. Under optimized conditions the bacterial consortium was able to decolorize the dye almost completely (>91%) within 12h. Bacterial consortium was able to decolorize 10 different azo dyes. The optimum combination of the four variables predicted through RSM was confirmed through confirmatory experiments and hence this bacterial consortium holds potential for the treatment of industrial waste water. Dye degradation products obtained during the course of decolorization were analyzed by HPTLC.

Determination of Transport Parameters in Unsaturated Zone by Tracer Experiment in the Porous Aquifer located at Ljubljana, Slovenia

NASA Astrophysics Data System (ADS)

Vidmar, S.; Cencur Curk, B.

2009-04-01

The gravel sandy aquifer of Ljubljansko polje is the source of drinking water for nearly 300.000 inhabitants of the Ljubljana city and vicinity. There are two main waterworks: Kleče and Hrastje. The plain area of Ljubljansko polje is a tectonic sink and consists of river sediments that can reach in thickness more than 100 m in the deepest part. The bedrock is the impermeable permocarbonic clayey shale, mudstones and sandstones. The hydraulic conductivity of Ljubljansko polje sediments is very good, from 10-2 m/s in the central part to 3.7•10-3 m/s on the borders of the plain. The average groundwater level is 20 m below surface. A numerical groundwater flow model was established for the wider area of the Ljubljansko polje aquifer. The fore mentioned model was not calibrated on solute transport parameters but only on water levels and this lead to unreliability in the transport model and its predictions of pollution scenarios. The transport model needs to calculate reliable scenarios of pollution dispersion, which can only be achieved with the application of real transport parameters. Human activities in the area of the Hrastje waterworks of Ljubljana threaten to degrade groundwater quality. For this reason several tracer experiments were carried out in the past. Despite a great risk, the experiments were performed on the catchment area of the Hrastje waterworks, inside the second water protection zone. During the experiments the water from Hrastje waterworks was still in use for drinking water supply. The tracer experiments were carried out in order to determine the solute transport parameters such as advection, dispersion and sorption. The research proved that the tracers could be used safely on sensitive area and that the researchers are capable and qualified to carry it out with a highest level of security. Since none of the past tracer experiments, carried out in the same area, gave us any detailed information on pollutant spreading in unsaturated zone a new tracer experiment was performed. Uranine was used as a tracer with a single time injection (1 kg) directly into the unsaturated zone. To achieve no sorption on organic particles the top layer of the ground (approx. 1m) was removed. The concentrations of the tracer spreading were observed in the well which is down gradient (approx. 22m) from the injection point. The tracer experiment was monitored for 305 days with records recorded every 4 minutes. All major events observed from the breakthrough curve, corresponded to rain events with a different delay depending on the water content in the unsaturated zone. When the unsaturated zone contains water the response in the observation well was faster than when the unsaturated zone was dry. The obtained data have been used in an analytical method (Multi-Dispersion-Model (MDM)). This solution provided the following transport parameters: mean transit time, mean velocity, longitudinal dispersion and dispersivity. The obtained parameters from the analytical solution will also be verified in the numerical model. The final results should enable better knowledge of the solute transport parameters and thus a better understanding of pollution dispersion as a help for water supply management system including measures for pollution prevention and as an actions/measure scenario in case of pollution.

Near-infrared voltage-sensitive fluorescent dyes optimized for optical mapping in blood-perfused myocardium.

PubMed

Matiukas, Arvydas; Mitrea, Bogdan G; Qin, Maochun; Pertsov, Arkady M; Shvedko, Alexander G; Warren, Mark D; Zaitsev, Alexey V; Wuskell, Joseph P; Wei, Mei-de; Watras, James; Loew, Leslie M

2007-11-01

Styryl voltage-sensitive dyes (e.g., di-4-ANEPPS) have been used successfully for optical mapping in cardiac cells and tissues. However, their utility for probing electrical activity deep inside the myocardial wall and in blood-perfused myocardium has been limited because of light scattering and high absorption by endogenous chromophores and hemoglobin at blue-green excitation wavelengths. The purpose of this study was to characterize two new styryl dyes--di-4-ANBDQPQ (JPW-6003) and di-4-ANBDQBS (JPW-6033)--optimized for blood-perfused tissue and intramural optical mapping. Voltage-dependent spectra were recorded in a model lipid bilayer. Optical mapping experiments were conducted in four species (mouse, rat, guinea pig, and pig). Hearts were Langendorff perfused using Tyrode's solution and blood (pig). Dyes were loaded via bolus injection into perfusate. Transillumination experiments were conducted in isolated coronary-perfused pig right ventricular wall preparations. The optimal excitation wavelength in cardiac tissues (650 nm) was >70 nm beyond the absorption maximum of hemoglobin. Voltage sensitivity of both dyes was approximately 10% to 20%. Signal decay half-life due to dye internalization was 80 to 210 minutes, which is 5 to 7 times slower than for di-4-ANEPPS. In transillumination mode, DeltaF/F was as high as 20%. In blood-perfused tissues, DeltaF/F reached 5.5% (1.8 times higher than for di-4-ANEPPS). We have synthesized and characterized two new near-infrared dyes with excitation/emission wavelengths shifted >100 nm to the red. They provide both high voltage sensitivity and 5 to 7 times slower internalization rate compared to conventional dyes. The dyes are optimized for deeper tissue probing and optical mapping of blood-perfused tissue, but they also can be used for conventional applications.

Biodegradation of Methylene Blue Dye by Sequential Treatment Using Anaerobic Hybrid Reactor and Submerged Aerobic Fixed Film Bioreactor

NASA Astrophysics Data System (ADS)

Farooqi, Izharul H.; Basheer, Farrukh; Tiwari, Pradeepika

2017-12-01

Laboratory scale experiments were carried out to access the feasibility of sequential anaerobic/aerobic biological treatment for the biodegradation of Methylene Blue (MB) dye. Anaerobic studies were performed using anaerobic hybrid reactor (consisting of UASB and Anaerobic filter) whereas submerged aerobic fixed film reactor was used as aerobic reactor. Degradation of MB dye was attempted using neutralized acetic acid (1000 mg/L) as co-substrate. MB dye concentration was stepwise increased from 10 to 70 mg/L after reaching steady state in each dye concentration. Such a gradual increase in the dye concentration helps in the proper acclimatization of the sludge to dyes thereby avoiding the possible inhibitory effects to biological activities at high dye concentrations. The overall treatment efficiency of MB through sequential anaerobic-aerobic reactor operation was 90% at maximum attempted dye concentration of 70 mg/L. The effluent from anaerobic reactor was analysed for intermediate biodegradation products through HPLC. It was observed that catechol, quinone, amino pyrine, 1,4 diamino benzene were present. However they were absent in final effluent.

Probing plasmodesmata function with biochemical inhibitors.

PubMed

White, Rosemary G

2015-01-01

To investigate plasmodesmata (PD) function, a useful technique is to monitor the effect on cell-to-cell transport of applying an inhibitor of a physiological process, protein, or other cell component of interest. Changes in PD transport can then be monitored in one of several ways, most commonly by measuring the cell-to-cell movement of fluorescent tracer dyes or of free fluorescent proteins. Effects on PD structure can be detected in thin sections of embedded tissue observed using an electron microscope, most commonly a Transmission Electron Microscope (TEM). This chapter outlines commonly used inhibitors, methods for treating different tissues, how to detect altered cell-to-cell transport and PD structure, and important caveats.

Monitoring estuarine circulation and ocean waste dispersion using an integrated satellite-aircraft-drogue approach. [Delaware coast and Delaware Bay

NASA Technical Reports Server (NTRS)

Klemas, V. (Principal Investigator); Davis, G.; Wang, H.

1975-01-01

The author has identified the following significant results. An inexpensive, integrated drogue-aircraft-satellite approach was developed which is based on the Lagrangian technique and employs remotely tracked drogues and dyes together with satellite observation of natural tracers, such as suspended sediment. Results include current circulation studies in Delaware Bay in support of an oil slick movement model; investigations of the dispersion and movement of acid wastes dumped 40 miles off the Delaware coast; and coastal current circulation. In each case, the integrated drogue-aircraft-satellite approach compares favorably with other techniques on the basis of accuracy, cost effectiveness, and performance under severe weather conditions.

CISDE Experiment: Nearshore-Estuarine Connectivity & Dispersion

NASA Astrophysics Data System (ADS)

Giddings, S. N.; Feddersen, F.; Harvey, M.; Gilroy, A. R.; Crooks, J.; McCullough, J.; Lorda, J.; Grimes, D. J.; Pawlak, G. R.

2016-02-01

As part of the CSIDE, Cross Surfzone/Inner-shelf Dye Exchange experiment, nearby shallow estuary measurements were made in addition to the surfzone and inner-shelf measurements, providing an integrated view into the estuary, surfzone, and shelf system. The CSIDE experiment was designed to look at the dispersion of dye as a proxy for dispersion of waterborne constituents such as pollutants, larvae, sediment, etc. along the coast and across the surfzone to a stratified inner-shelf. The Tijuana River Estuary, a shallow estuary with extensive intertidal regions and marsh, is sometimes the source of harmful contaminants that lead to beach closures in the CSIDE experiment region. However, at other times, the estuary may also act as a sink depending upon the freshwater conditions upstream. During this experiment, we installed temperature and salinity sensors, velocimeters, and fluorometers (measuring both turbidity and the dye concentration) in the two main arms of the Tijuana River Estuary to assess the connectivity between the surfzone and the estuary as well as the in-estuary dispersion.

Low frequency sonochemical synthesis of nanoporous amorphous manganese dioxide (MnO{sub 2}) and adsorption of remazol reactive dye

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hasan, Siti Zubaidah; Yusop, Muhammad Rahimi; Othman, Mohamed Rozali, E-mail: rozali@ukm.edu.my

2015-09-25

Nanoporous amorphous-MnO{sub 2} was synthesized by sonochemical process (sonication) on the solid manganese (II) acetate tetrahydrate (Mn(CH{sub 3}COO){sub 2}.4H{sub 2}O) in 0.1 M KMnO{sub 4}. The product was characterized by X-ray diffraction (XRD), morphology of the material was scanned by Field Emission Scanning Electron Microscopy (FE-SEM) and absorptions of MnO{sub 2} bonding was characterized by Fourier Transform Infra-Red Spectrometer (FT-IR). Remazol reactive dye or Red 3BS, was used in the adsorption study using nanoporous amorphous-MnO{sub 2}. In batch experiment, 10 ppm of Remazol reactive dye was used and experiment was carried out at room temperature. Adsorption of Remazol dye onmore » 0.2g synthesized nanoporous amorphous-MnO{sub 2} showed 99 – 100% decolorization.« less

Tracer techniques for urine volume determination and urine collection and sampling back-up system

NASA Technical Reports Server (NTRS)

Ramirez, R. V.

1971-01-01

The feasibility, functionality, and overall accuracy of the use of lithium were investigated as a chemical tracer in urine for providing a means of indirect determination of total urine volume by the atomic absorption spectrophotometry method. Experiments were conducted to investigate the parameters of instrumentation, tracer concentration, mixing times, and methods for incorporating the tracer material in the urine collection bag, and to refine and optimize the urine tracer technique to comply with the Skylab scheme and operational parameters of + or - 2% of volume error and + or - 1% accuracy of amount of tracer added to each container. In addition, a back-up method for urine collection and sampling system was developed and evaluated. This back-up method incorporates the tracer technique for volume determination in event of failure of the primary urine collection and preservation system. One chemical preservative was selected and evaluated as a contingency chemical preservative for the storage of urine in event of failure of the urine cooling system.

Kinetic limitations on tracer partitioning in ganglia dominated source zones.

PubMed

Ervin, Rhiannon E; Boroumand, Ali; Abriola, Linda M; Ramsburg, C Andrew

2011-11-01

Quantification of the relationship between dense nonaqueous phase liquid (DNAPL) source strength, source longevity and spatial distribution is increasingly recognized as important for effective remedial design. Partitioning tracers are one tool that may permit interrogation of DNAPL architecture. Tracer data are commonly analyzed under the assumption of linear, equilibrium partitioning, although the appropriateness of these assumptions has not been fully explored. Here we focus on elucidating the nonlinear and nonequilibrium partitioning behavior of three selected alcohol tracers - 1-pentanol, 1-hexanol and 2-octanol in a series of batch and column experiments. Liquid-liquid equilibria for systems comprising water, TCE and the selected alcohol illustrate the nonlinear distribution of alcohol between the aqueous and organic phases. Complete quantification of these equilibria facilitates delineation of the limits of applicability of the linear partitioning assumption, and assessment of potential inaccuracies associated with measurement of partition coefficients at a single concentration. Column experiments were conducted under conditions of non-equilibrium to evaluate the kinetics of the reversible absorption of the selected tracers in a sandy medium containing a uniform entrapped saturation of TCE-DNAPL. Experimental tracer breakthrough data were used, in conjunction with mathematical models and batch measurements, to evaluate alternative hypotheses for observed deviations from linear equilibrium partitioning behavior. Analyses suggest that, although all tracers accumulate at the TCE-DNAPL/aqueous interface, surface accumulation does not influence transport at concentrations typically employed for tracer tests. Moreover, results reveal that the kinetics of the reversible absorption process are well described using existing mass transfer correlations originally developed to model aqueous boundary layer resistance for pure-component NAPL dissolution. Copyright © 2011 Elsevier B.V. All rights reserved.

Relative distance between tracers as a measure of diffusivity within moving aggregates

NASA Astrophysics Data System (ADS)

Pönisch, Wolfram; Zaburdaev, Vasily

2018-02-01

Tracking of particles, be it a passive tracer or an actively moving bacterium in the growing bacterial colony, is a powerful technique to probe the physical properties of the environment of the particles. One of the most common measures of particle motion driven by fluctuations and random forces is its diffusivity, which is routinely obtained by measuring the mean squared displacement of the particles. However, often the tracer particles may be moving in a domain or an aggregate which itself experiences some regular or random motion and thus masks the diffusivity of tracers. Here we provide a method for assessing the diffusivity of tracer particles within mobile aggregates by measuring the so-called mean squared relative distance (MSRD) between two tracers. We provide analytical expressions for both the ensemble and time averaged MSRD allowing for direct identification of diffusivities from experimental data.

Relative Roles of Gap Junction Channels and Cytoplasm in Cell-to-Cell Diffusion of Fluorescent Tracers

NASA Astrophysics Data System (ADS)

Safranyos, Richard G. A.; Caveney, Stanley; Miller, James G.; Petersen, Nils O.

1987-04-01

Intercellular (tissue) diffusion of molecules requires cytoplasmic diffusion and diffusion through gap junctional (or cell-to-cell) channels. The rates of tissue and cytoplasmic diffusion of fluorescent tracers, expressed as an effective diffusion coefficient, De, and a cytoplasmic diffusion coefficient, Dcyt, have been measured among the developing epidermal cells of a larval beetle, Tenebrio molitor L., to determine the contribution of the junctional channels to intercellular diffusion. Tracer diffusion was measured by injecting fluorescent tracers into cells and quantitating the rate of subsequent spread into adjacent cells. Cytoplasmic diffusion was determined by fluorescence photobleaching. These experiments show that gap junctional channels constitute approximately 70-80% of the total cell-to-cell resistance to the diffusion of organic tracers at high concentrations in this tissue. At low concentrations, however, the binding of tracer to cytoplasm slows down the cytoplasmic diffusion, which may limit intercellular diffusion.

Validation of a dye stain assay for vaginally inserted HEC-filled microbicide applicators

PubMed Central

Katzen, Lauren L.; Fernández-Romero, José A.; Sarna, Avina; Murugavel, Kailapuri G.; Gawarecki, Daniel; Zydowsky, Thomas M.; Mensch, Barbara S.

2011-01-01

Background The reliability and validity of self-reports of vaginal microbicide use are questionable given the explicit understanding that participants are expected to comply with study protocols. Our objective was to optimize the Population Council's previously validated dye stain assay (DSA) and related procedures, and establish predictive values for the DSA's ability to identify vaginally inserted single-use, low-density polyethylene microbicide applicators filled with hydroxyethylcellulose gel. Methods Applicators, inserted by 252 female sex workers enrolled in a microbicide feasibility study in Southern India, served as positive controls for optimization and validation experiments. Prior to validation, optimal dye concentration and staining time were ascertained. Three validation experiments were conducted to determine sensitivity, specificity, negative predictive values and positive predictive values. Results The dye concentration of 0.05% (w/v) FD&C Blue No. 1 Granular Food Dye and staining time of five seconds were determined to be optimal and were used for the three validation experiments. There were a total of 1,848 possible applicator readings across validation experiments; 1,703 (92.2%) applicator readings were correct. On average, the DSA performed with 90.6% sensitivity, 93.9% specificity, and had a negative predictive value of 93.8% and a positive predictive value of 91.0%. No statistically significant differences between experiments were noted. Conclusions The DSA was optimized and successfully validated for use with single-use, low-density polyethylene applicators filled with hydroxyethylcellulose (HEC) gel. We recommend including the DSA in future microbicide trials involving vaginal gels in order to identify participants who have low adherence to dosing regimens. In doing so, we can develop strategies to improve adherence as well as investigate the association between product use and efficacy. PMID:21992983

Transport of carboxymethyl cellulose stabilized nanoscale zerovalent iron in porous media, an experimental and modeling study

NASA Astrophysics Data System (ADS)

Sleep, Brent; Mondal, Pulin; Furbacher, Paul; Cui, Ziteng; Krol, Magdalena

2015-04-01

Nano-scale zero valent iron (nZVI) is capable of reacting with a wide variety of groundwater contaminants. Therefore, during the last decade nZVI has received significant attention for application in subsurface remediation, particularly for sites contaminated with chlorinated compounds and heavy metals. However, due to agglomeration of the nZVI, delivery into the contaminated subsurface zones is challenging. Polymer stabilization of nZVI can enhance the mobility of the iron particles in the subsurface. In this study, a set of laboratory-scale transport experiments and numerical simulations were performed to evaluate carboxymethyl cellulose (CMC) polymer stabilized nZVI transport in porous media. Experiments were conducted in a two-dimensional water-saturated lab-scale glass-walled sandbox, uniformly packed with silica sand, to identify the effects of water specific discharge and CMC concentration on nZVI transport. Experiments were also performed using Lissamine Green B (LGB) dye as a non-reactive tracer to characterize the sand media. The CMC stabilized nZVI was synthesized freshly at a concentration of 1000 mg/L before each transport experiment. The synthesized CMC-nZVI mixture was characterized using transmission electron microscopy, dynamic light scattering, and UV-visual spectrophotometry. The movement of the LGB dye and nZVI in the sandbox during the experiments was monitored using time-lapsed images captured using a light source and a dark box. The transport of LGB, CMC, and CMC-nZVI was evaluated through analysis of the breakthrough curves at the outlet and the retained nZVI in the sandbox. The LGB, CMC, and nZVI transport was also modeled using a multiphase flow and transport model considering LGB and CMC as solutes, and nZVI as a colloid. Analysis of the breakthrough data showed that the mass recovery of LGB and CMC was greater than 95 % indicating conservative transport in silica sand. However, the mean residence time of CMC was significantly higher than that of LGB due to CMC viscosity effects. Increasing the CMC concentration from 0.2 % to 0.8 % increased nZVI stability, but caused higher pressure drops in the sand box, indicating that use of high CMC concentration may limit the injection rates. The images captured during transport experiments and the total iron analysis of the sand after the transport experiments showed that a significant amount of nZVI was retained in the sandbox. The mass recovery of nZVI was lower than 40 % due to the attachment onto the sand surfaces. The simulation results of LGB, CMC, and nZVI matched the experimental observations and allowed estimation of transport parameters that could be used to predict CMC stabilized nZVI transport under a variety of conditions.

Experimental design for estimating parameters of rate-limited mass transfer: Analysis of stream tracer studies

USGS Publications Warehouse

Wagner, Brian J.; Harvey, Judson W.

1997-01-01

Tracer experiments are valuable tools for analyzing the transport characteristics of streams and their interactions with shallow groundwater. The focus of this work is the design of tracer studies in high-gradient stream systems subject to advection, dispersion, groundwater inflow, and exchange between the active channel and zones in surface or subsurface water where flow is stagnant or slow moving. We present a methodology for (1) evaluating and comparing alternative stream tracer experiment designs and (2) identifying those combinations of stream transport properties that pose limitations to parameter estimation and therefore a challenge to tracer test design. The methodology uses the concept of global parameter uncertainty analysis, which couples solute transport simulation with parameter uncertainty analysis in a Monte Carlo framework. Two general conclusions resulted from this work. First, the solute injection and sampling strategy has an important effect on the reliability of transport parameter estimates. We found that constant injection with sampling through concentration rise, plateau, and fall provided considerably more reliable parameter estimates than a pulse injection across the spectrum of transport scenarios likely encountered in high-gradient streams. Second, for a given tracer test design, the uncertainties in mass transfer and storage-zone parameter estimates are strongly dependent on the experimental Damkohler number, DaI, which is a dimensionless combination of the rates of exchange between the stream and storage zones, the stream-water velocity, and the stream reach length of the experiment. Parameter uncertainties are lowest at DaI values on the order of 1.0. When DaI values are much less than 1.0 (owing to high velocity, long exchange timescale, and/or short reach length), parameter uncertainties are high because only a small amount of tracer interacts with storage zones in the reach. For the opposite conditions (DaI ≫ 1.0), solute exchange rates are fast relative to stream-water velocity and all solute is exchanged with the storage zone over the experimental reach. As DaI increases, tracer dispersion caused by hyporheic exchange eventually reaches an equilibrium condition and storage-zone exchange parameters become essentially nonidentifiable.

TRACER DISPERSION STUDIES FOR HYDRAULIC CHARACTERIZATION OF PIPES

EPA Science Inventory

A series of experiments were conducted at the U. S. Environmental Protection Agency (EPA) Test & Evaluation (T&E) Facility in Cincinnati, Ohio, to quantify longitudinal dispersion of a sodium fluoride tracer in polyvinyl chloride (PVC) pipe and ductile iron pipe under laminar, tr...

Image navigation as a means to expand the boundaries of fluorescence-guided surgery

NASA Astrophysics Data System (ADS)

Brouwer, Oscar R.; Buckle, Tessa; Bunschoten, Anton; Kuil, Joeri; Vahrmeijer, Alexander L.; Wendler, Thomas; Valdés-Olmos, Renato A.; van der Poel, Henk G.; van Leeuwen, Fijs W. B.

2012-05-01

Hybrid tracers that are both radioactive and fluorescent help extend the use of fluorescence-guided surgery to deeper structures. Such hybrid tracers facilitate preoperative surgical planning using (3D) scintigraphic images and enable synchronous intraoperative radio- and fluorescence guidance. Nevertheless, we previously found that improved orientation during laparoscopic surgery remains desirable. Here we illustrate how intraoperative navigation based on optical tracking of a fluorescence endoscope may help further improve the accuracy of hybrid surgical guidance. After feeding SPECT/CT images with an optical fiducial as a reference target to the navigation system, optical tracking could be used to position the tip of the fluorescence endoscope relative to the preoperative 3D imaging data. This hybrid navigation approach allowed us to accurately identify marker seeds in a phantom setup. The multispectral nature of the fluorescence endoscope enabled stepwise visualization of the two clinically approved fluorescent dyes, fluorescein and indocyanine green. In addition, the approach was used to navigate toward the prostate in a patient undergoing robot-assisted prostatectomy. Navigation of the tracked fluorescence endoscope toward the target identified on SPECT/CT resulted in real-time gradual visualization of the fluorescent signal in the prostate, thus providing an intraoperative confirmation of the navigation accuracy.

Novel Model of Somatosensory Nerve Transfer in the Rat.

PubMed

Paskal, Adriana M; Paskal, Wiktor; Pelka, Kacper; Podobinska, Martyna; Andrychowski, Jaroslaw; Wlodarski, Pawel K

2018-05-09

Nerve transfer (neurotization) is a reconstructive procedure in which the distal denervated nerve is joined with a proximal healthy nerve of a less significant function. Neurotization models described to date are limited to avulsed roots or pure motor nerve transfers, neglecting the clinically significant mixed nerve transfer. Our aim was to determine whether femoral-to-sciatic nerve transfer could be a feasible model of mixed nerve transfer. Three Sprague Dawley rats were subjected to unilateral femoral-to-sciatic nerve transfer. After 50 days, functional recovery was evaluated with a prick test. At the same time, axonal tracers were injected into each sciatic nerve distally to the lesion site, to determine nerve fibers' regeneration. In the prick test, the rats retracted their hind limbs after stimulation, although the reaction was moderately weaker on the operated side. Seven days after injection of axonal tracers, dyes were visualized by confocal microscopy in the spinal cord. Innervation of the recipient nerve originated from higher segments of the spinal cord than that on the untreated side. The results imply that the femoral nerve axons, ingrown into the damaged sciatic nerve, reinnervate distal targets with a functional outcome.

Synthesis and Characterization of Organic Dyes Containing Various Donors and Acceptors

PubMed Central

Wu, Tzi-Yi; Tsao, Ming-Hsiu; Chen, Fu-Lin; Su, Shyh-Gang; Chang, Cheng-Wen; Wang, Hong-Paul; Lin, Yuan-Chung; Ou-Yang, Wen-Chung; Sun, I-Wen

2010-01-01

New organic dyes comprising carbazole, iminodibenzyl, or phenothiazine moieties, respectively, as the electron donors, and cyanoacetic acid or acrylic acid moieties as the electron acceptors/anchoring groups were synthesized and characterized. The influence of heteroatoms on carbazole, iminodibenzyl and phenothiazine donors, and cyano-substitution on the acid acceptor is evidenced by spectral, electrochemical, photovoltaic experiments, and density functional theory calculations. The phenothiazine dyes show solar-energy-to-electricity conversion efficiency (η) of 3.46–5.53%, whereas carbazole and iminodibenzyl dyes show η of 2.43% and 3.49%, respectively. PMID:20162019

Tracer concentration profiles measured in central London as part of the REPARTEE campaign

NASA Astrophysics Data System (ADS)

Martin, D.; Petersson, K. F.; White, I. R.; Henshaw, S. J.; Nickless, G.; Lovelock, A.; Barlow, J. F.; Dunbar, T.; Wood, C. R.; Shallcross, D. E.

2011-01-01

There have been relatively few tracer experiments carried out that have looked at vertical plume spread in urban areas. In this paper we present results from two tracer (cyclic perfluorocarbon) experiments carried out in 2006 and 2007 in central London centred on the BT Tower as part of the REPARTEE (Regent's Park and Tower Environmental Experiment) campaign. The height of the tower gives a unique opportunity to study vertical dispersion profiles and transport times in central London. Vertical gradients are contrasted with the relevant Pasquill stability classes. Estimation of lateral advection and vertical mixing times are made and compared with previous measurements. Data are then compared with a simple operational dispersion model and contrasted with data taken in central London as part of the DAPPLE campaign. This correlates dosage with non-dimensionalised distance from source. Such analyses illustrate the feasibility of the use of these empirical correlations over these prescribed distances in central London.

Role of the ocean's AMOC in setting the uptake efficiency of transient tracers

NASA Astrophysics Data System (ADS)

Romanou, A.; Marshall, J.; Kelley, M.; Scott, J. R.

2017-12-01

The central role played by the ocean's Atlantic Meridional Overturning Circulation (AMOC) in the uptake and sequestration of transient tracers is studied in a series of experiments with the Goddard Institute for Space Studies and Massachusetts Institute of Technology ocean circulation models. Forced by observed atmospheric time series of CFC-11, both models exhibit realistic distributions in the ocean, with similar surface biases but different response over time. To better understand what controls uptake, we ran idealized forcing experiments in which the AMOC strength varied over a wide range, bracketing the observations. We found that differences in the strength and vertical scale of the AMOC largely accounted for the different rates of CFC-11 uptake and vertical distribution thereof. A two-box model enables us to quantify and relate uptake efficiency of passive tracers to AMOC strength and how uptake efficiency decreases in time. We also discuss the relationship between passive tracer and heat uptake efficiency, of which the latter controls the transient climate response to anthropogenic forcing in the North Atlantic. We find that heat uptake efficiency is substantially less (by about a factor of 5) than that for a passive tracer.

Automatic reactor model synthesis with genetic programming.

PubMed

Dürrenmatt, David J; Gujer, Willi

2012-01-01

Successful modeling of wastewater treatment plant (WWTP) processes requires an accurate description of the plant hydraulics. Common methods such as tracer experiments are difficult and costly and thus have limited applicability in practice; engineers are often forced to rely on their experience only. An implementation of grammar-based genetic programming with an encoding to represent hydraulic reactor models as program trees should fill this gap: The encoding enables the algorithm to construct arbitrary reactor models compatible with common software used for WWTP modeling by linking building blocks, such as continuous stirred-tank reactors. Discharge measurements and influent and effluent concentrations are the only required inputs. As shown in a synthetic example, the technique can be used to identify a set of reactor models that perform equally well. Instead of being guided by experience, the most suitable model can now be chosen by the engineer from the set. In a second example, temperature measurements at the influent and effluent of a primary clarifier are used to generate a reactor model. A virtual tracer experiment performed on the reactor model has good agreement with a tracer experiment performed on-site.

Water-level, velocity, and dye measurements in the Chicago tunnels

USGS Publications Warehouse

Oberg, K.A.; Schmidt, A.R.; ,

1993-01-01

On April 13, 1992, a section of a 100-year-old underground freight tunnel in downtown Chicago, Illinois was breached where the tunnel crosses under the Chicago River, about 15 meters below land surface. The breach allowed water from the Chicago River to flow into the freight tunnels and into buildings connected to the tunnels. As a result, utility services to more than 100 buildings in downtown Chicago were lost, several hundred thousand workers were sent home, and the entire subway system and a major expressway in the Loop were shut down. The breach in the tunnel was sealed and the tunnel dewatered by the U.S. Army Corps of Engineers (Corps) and its contractors. The U.S. Geological Survey (USGS) assisted the Corps in their efforts to plug and dewater the freight tunnels and connected buildings. This assistance included the installation and operation of telemetered gages for monitoring water levels in the tunnel system and velocity measurements made in the vicinity of the tunnel breach. A fluorescent dye tracer was used to check for leaks in the plugs, which isolated the damaged portion of the Chicago freight tunnel from the remainder of the tunnel system.

Multicolor fluorescence "click"-chemistry as a means to select membrane targets for pre-targeting approaches by function of their receptor kinetics.

PubMed

van der Wal, Steffen; de Korne, Clarize M; Sand, Laurens L G; van Willigen, Danny M; Hogendoorn, Pancras C W; Szuhai, Karoly; van Leeuwen, Fijs W B; Buckle, Tessa

2018-06-04

Availability of a receptor for theranostic pre-targeting approaches was assessed using a novel "click" chemistry-based de-activatable fluorescence-quenching concept. Efficacy was evaluated in a cell-based model system that exhibits both membranous (available) and internalized (unavailable) receptor-fractions of the clinically relevant receptor chemokine receptor 4 (CXCR4). Proof of concept was based on a de-activatable tracer consisting out of a CXCR4 specific peptide functionalized with a Cy5 dye comprising a chemo-selective azide handle (N3-Cy5-AcTZ14011). Reaction with a Cy7 quencher dye (Cy7-DBCO) resulted in optically silent Cy7-["click"]-Cy5-AcTZ14011. In situ a >90% FRET-based reduction of signal intensity of N3-Cy5-AcTZ14011 (KD 222.4 ± 25.2 nM) was seen within minutes after quencher addition. In cells, discrimination between the membranous and internalized receptor-fraction could be made through quantitative assessment of quenching/internalization kinetics. As such, using this approach screening of membrane receptors and their applicability in receptor-(pre-)targeted theranostics can become straightforward. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

LOW LEVEL COUNTING TECHNIQUES WITH SPECIAL REFERENCE TO BIOMEDICAL TRACER PROBLEMS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hosain, F.; Nag, B.D.

1959-12-01

Low-level counting techniques in tracer experiments are discussed with emphasis on the measurement of beta and gamma radiations with Geiger and scintillation counting methods. The basic principles of low-level counting are outlined. Screen-wall counters, internal gas counters, low-level beta counters, scintillation spectrometers, liquid scintillators, and big scintillation installations are described. Biomedical tracer investigations are discussed. Applications of low-level techniques in archaeological dating, biology, and other problems are listed. (M.C.G.)

Vapor-phase transport of trichloroethene in an intermediate-scale vadose-zone system: retention processes and tracer-based prediction.

PubMed

Costanza-Robinson, Molly S; Carlson, Tyson D; Brusseau, Mark L

2013-02-01

Gas-phase transport experiments were conducted using a large weighing lysimeter to evaluate retention processes for volatile organic compounds (VOCs) in water-unsaturated (vadose-zone) systems, and to test the utility of gas-phase tracers for predicting VOC retardation. Trichloroethene (TCE) served as a model VOC, while trichlorofluoromethane (CFM) and heptane were used as partitioning tracers to independently characterize retention by water and the air-water interface, respectively. Retardation factors for TCE ranged between 1.9 and 3.5, depending on water content. The results indicate that dissolution into the bulk water was the primary retention mechanism for TCE under all conditions studied, contributing approximately two-thirds of the total measured retention. Accumulation at the air-water interface comprised a significant fraction of the observed retention for all experiments, with an average contribution of approximately 24%. Sorption to the solid phase contributed approximately 10% to retention. Water contents and air-water interfacial areas estimated based on the CFM and heptane tracer data, respectively, were similar to independently measured values. Retardation factors for TCE predicted using the partitioning-tracer data were in reasonable agreement with the measured values. These results suggest that gas-phase tracer tests hold promise for characterizing the retention and transport of VOCs in the vadose-zone. Copyright © 2012 Elsevier B.V. All rights reserved.

Measuring gravel transport and dispersion in a mountain river using passive radio tracers

USGS Publications Warehouse

Bradley, D. N.; Tucker, G. E.

2012-01-01

Random walk models of fluvial sediment transport recognize that grains move intermittently, with short duration steps separated by rests that are comparatively long. These models are built upon the probability distributions of the step length and the resting time. Motivated by these models, tracer experiments have attempted to measure directly the steps and rests of sediment grains in natural streams. This paper describes results from a large tracer experiment designed to test stochastic transport models. We used passive integrated transponder (PIT) tags to label 893 coarse gravel clasts and placed them in Halfmoon Creek, a small alpine stream near Leadville, Colorado, USA. The PIT tags allow us to locate and identify tracers without picking them up or digging them out of the streambed. They also enable us to find a very high percentage of our rocks, 98% after three years and 96% after the fourth year. We use the annual tracer displacement to test two stochastic transport models, the Einstein–Hubbell–Sayre (EHS) model and the Yang–Sayre gamma-exponential model (GEM). We find that the GEM is a better fit to the observations, particularly for slower moving tracers and suggest that the strength of the GEM is that the gamma distribution of step lengths approximates a compound Poisson distribution. Published in 2012. This article is a US Government work and is in the public domain in the USA.

A Simplified Undergraduate Laboratory Experiment to Evaluate the Effect of the Ionic Strength on the Equilibrium Concentration Quotient of the Bromcresol Green Dye

ERIC Educational Resources Information Center

Rodriguez, Hernan B.; Mirenda, Martin

2012-01-01

A modified laboratory experiment for undergraduate students is presented to evaluate the effects of the ionic strength, "I", on the equilibrium concentration quotient, K[subscript c], of the acid-base indicator bromcresol green (BCG). The two-step deprotonation of the acidic form of the dye (sultone form), as it is dissolved in water, yields…

Miniaturization of a homogeneous fluorescence immunoassay based on energy transfer using nanotiter plates as high-density sample carriers.

PubMed

Schobel, U; Coille, I; Brecht, A; Steinwand, G M; Gauglitz, G

2001-11-01

The miniaturization of a homogeneous competitive immunoassay to a final assay volume of 70 nL is described. As the sample carrier, disposable plastic nanotiter plates (NTP) with dimensions of 2 x 2 cm2 containing 25 x 25 wells, corresponding to approximately 15,000 wells on a traditional 96-well microtiter plate footprint, were used. Sample handling was accomplished by a piezoelectrically actuated micropipet. To reduce evaporation while pipetting the assays, the NTP was handled in a closed humid chamber and cooled to the point of condensation. To avoid washing steps, a homogeneous assay was developed that was based on energy-transfer (ET). As a model system, an antibody-based assay for the detection of the environmentally relevant compound, simazine, in drinking water was chosen. Antibodies were labeled with the long-wavelength-excitable sulfoindocyanine dye Cy5 (donor), and a tracer was synthesized by labeling BSA with a triazine derivative and the acceptor dye Cy5.5. At low analyte concentrations, the tracer was preferably bound to the antibody binding sites. As a result of the close proximity of Cy5.5 and Cy5, an efficient quenching of the Cy5 fluorescence occurred. Higher analyte concentrations led to a progressive binding of the analyte to the antibody binding sites. The increased Cy5 fluorescence was determined by using a scanning laser-induced fluorescence detector. The limit of detection (LOD), using an antibody concentration of 20 nM, was 0.32 microg/L, or 1.11 x 10(-16) mol of simazine. In comparison, the LOD of the 96-well microtiter-plate-based ET immunoassay (micro-ETIA) was 0.15 microg/L, or 1.87 x 10(-13) mol. The LOD of the optimized micro-ETIA at 1 nM IgG, was 0.01 microg/L.

Impact of meteorological inflow uncertainty on tracer transport and source estimation in urban atmospheres

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lucas, Donald D.; Gowardhan, Akshay; Cameron-Smith, Philip

2015-08-08

Here, a computational Bayesian inverse technique is used to quantify the effects of meteorological inflow uncertainty on tracer transport and source estimation in a complex urban environment. We estimate a probability distribution of meteorological inflow by comparing wind observations to Monte Carlo simulations from the Aeolus model. Aeolus is a computational fluid dynamics model that simulates atmospheric and tracer flow around buildings and structures at meter-scale resolution. Uncertainty in the inflow is propagated through forward and backward Lagrangian dispersion calculations to determine the impact on tracer transport and the ability to estimate the release location of an unknown source. Ourmore » uncertainty methods are compared against measurements from an intensive observation period during the Joint Urban 2003 tracer release experiment conducted in Oklahoma City.« less

Tracer water transport and subgrid precipitation variation within atmospheric general circulation models

NASA Astrophysics Data System (ADS)

Koster, Randal D.; Eagleson, Peter S.; Broecker, Wallace S.

1988-03-01

A capability is developed for monitoring tracer water movement in the three-dimensional Goddard Institute for Space Science Atmospheric General Circulation Model (GCM). A typical experiment with the tracer water model follows water evaporating from selected grid squares and determines where this water first returns to the Earth's surface as precipitation or condensate, thereby providing information on the lateral scales of hydrological transport in the GCM. Through a comparison of model results with observations in nature, inferences can be drawn concerning real world water transport. Tests of the tracer water model include a comparison of simulated and observed vertically-integrated vapor flux fields and simulations of atomic tritium transport from the stratosphere to the oceans. The inter-annual variability of the tracer water model results is also examined.

Tracer water transport and subgrid precipitation variation within atmospheric general circulation models

NASA Technical Reports Server (NTRS)

Koster, Randal D.; Eagleson, Peter S.; Broecker, Wallace S.

1988-01-01

A capability is developed for monitoring tracer water movement in the three-dimensional Goddard Institute for Space Science Atmospheric General Circulation Model (GCM). A typical experiment with the tracer water model follows water evaporating from selected grid squares and determines where this water first returns to the Earth's surface as precipitation or condensate, thereby providing information on the lateral scales of hydrological transport in the GCM. Through a comparison of model results with observations in nature, inferences can be drawn concerning real world water transport. Tests of the tracer water model include a comparison of simulated and observed vertically-integrated vapor flux fields and simulations of atomic tritium transport from the stratosphere to the oceans. The inter-annual variability of the tracer water model results is also examined.

Insights into the Mechanism of a Covalently Linked Organic Dye-Cobaloxime Catalyst System for Dye-Sensitized Solar Fuel Devices.

PubMed

Pati, Palas Baran; Zhang, Lei; Philippe, Bertrand; Fernández-Terán, Ricardo; Ahmadi, Sareh; Tian, Lei; Rensmo, Håkan; Hammarström, Leif; Tian, Haining

2017-06-09

A covalently linked organic dye-cobaloxime catalyst system based on mesoporous NiO is synthesized by a facile click reaction for mechanistic studies and application in a dye-sensitized solar fuel device. The system is systematically investigated by photoelectrochemical measurements, density functional theory, time-resolved fluorescence, transient absorption spectroscopy, and photoelectron spectroscopy. The results show that irradiation of the dye-catalyst on NiO leads to ultrafast hole injection into NiO from the excited dye, followed by a fast electron transfer process to reduce the catalyst. Moreover, the dye adopts different structures with different excited state energies, and excitation energy transfer occurs between neighboring molecules on the semiconductor surface. The photoelectrochemical experiments also show hydrogen production by this system. The axial chloride ligands of the catalyst are released during photocatalysis to create the active sites for proton reduction. A working mechanism of the dye-catalyst system on the photocathode is proposed on the basis of this study. © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

Modeling the impact of solid noise barriers on near road air quality

EPA Science Inventory

Studies based on field measurements, wind tunnel experiments, and controlled tracer gas releases indicate that solid, roadside noise barriers can lead to reductions in downwind near-road air pollutant concentrations. A tracer gas study showed that a solid barrier reduced pollutan...

Ice Wedge Polygon Bromide Tracer Experiment in Subsurface Flow, Barrow, Alaska, 2015-2016

DOE Data Explorer

Nathan Wales

2018-02-15

Time series of bromide tracer concentrations at several points within a low-centered polygon and a high-centered polygon. Concentration values were obtained from the analysis of water samples via ion chromatography with an accuracy of 0.01 mg/l.

Summary of the National Toxicology Program benzidine dye initiative.

PubMed Central

Morgan, D L; Dunnick, J K; Goehl, T; Jokinen, M P; Matthews, H B; Zeiger, E; Mennear, J H

1994-01-01

The benzidine dye initiative is a research program established by the National Toxicology Program to generate an integrated body of scientific information regarding the potential health risks associated with exposure to benzidine- and benzidine-congener-derived dyes. Because an in-depth evaluation of each of the hundreds of benzidine-congener-derived dyes was considered impractical, the research program was designed to study the metabolism and disposition, genetic toxicity, and in vivo toxicity and carcinogenicity of two primary benzidine congeners, 3,3'-dimethylbenzidine and 3,3'-dimethoxybenzidine, and a select group of prototypical dyes derived from those amines. It was anticipated that by applying the basic information generated in these extensive studies, it would be possible to make regulatory decisions about other dyes after conducting only a minimal number of experiments such as studies of disposition and metabolism, and in vitro mutagenicity. This paper summarizes the results of studies conducted to evaluate the metabolism, disposition, mutagenicity, toxicity, and carcinogenicity of representative benzidine congeners and derived dyes. PMID:7925189

Measurement of Bremsstrahlung radiation for in vivo monitoring of 14C tracer distribution between fruit and roots of kiwifruit (Actinidia arguta) cuttings.

PubMed

Black, Marykate Z; Minchin, Peter E H; Gould, Nick; Patterson, Kevin J; Clearwater, Michael J

2012-10-01

In vivo measurements of (14)C tracer distribution have usually involved monitoring the β(-) particles produced as (14)C decays. These particles are only detectable over short distances, limiting the use of this technique to thin plant material. In the present experiments, X-ray detectors were used to monitor the Bremsstrahlung radiation emitted since β(-) particles were absorbed in plant tissues. Bremsstrahlung radiation is detectable through larger tissue depths. The aim of these experiments was to demonstrate the Bremsstrahlung method by monitoring in vivo tracer-labelled photosynthate partitioning in small kiwifruit (Actinidia arguta (Siebold & Zucc.) Planch. ex Miq.) plants in response to root pruning. A source shoot, consisting of four leaves, was pulse labelled with (14)CO(2). Detectors monitored import into a fruit and the root system, and export from a source leaf. Repeat pulse labelling enabled the comparison of pre- and post-treatment observations within an individual plant. Diurnal trends were observed in the distribution of tracer, with leaf export reduced at night. Tracer accumulated in the roots declined after approximately 48 h, which may have resulted from export of (14)C from the roots in carbon skeletons. Cutting off half the roots did not affect tracer distribution to the remaining half. Tracer distribution to the fruit was increased after root pruning, demonstrating the higher competitive strength of the fruit than the roots for carbohydrate supply. Increased partitioning to the fruit following root pruning has also been demonstrated in kiwifruit field trials.

Saline tracer visualized with three-dimensional electrical resistivity tomography: Field-scale spatial moment analysis

USGS Publications Warehouse

Singha, Kamini; Gorelick, Steven M.

2005-01-01

Cross-well electrical resistivity tomography (ERT) was used to monitor the migration of a saline tracer in a two-well pumping-injection experiment conducted at the Massachusetts Military Reservation in Cape Cod, Massachusetts. After injecting 2200 mg/L of sodium chloride for 9 hours, ERT data sets were collected from four wells every 6 hours for 20 days. More than 180,000 resistance measurements were collected during the tracer test. Each ERT data set was inverted to produce a sequence of 3-D snapshot maps that track the plume. In addition to the ERT experiment a pumping test and an infiltration test were conducted to estimate horizontal and vertical hydraulic conductivity values. Using modified moment analysis of the electrical conductivity tomograms, the mass, center of mass, and spatial variance of the imaged tracer plume were estimated. Although the tomograms provide valuable insights into field-scale tracer migration behavior and aquifer heterogeneity, standard tomographic inversion and application of Archie's law to convert electrical conductivities to solute concentration results in underestimation of tracer mass. Such underestimation is attributed to (1) reduced measurement sensitivity to electrical conductivity values with distance from the electrodes and (2) spatial smoothing (regularization) from tomographic inversion. The center of mass estimated from the ERT inversions coincided with that given by migration of the tracer plume using 3-D advective-dispersion simulation. The 3-D plumes seen using ERT exhibit greater apparent dispersion than the simulated plumes and greater temporal spreading than observed in field data of concentration breakthrough at the pumping well.

Evaluating 10B-enriched Boric Acid, Bromide, and Heat as Tracers of Recycled Groundwater Flow near MAR Operations

NASA Astrophysics Data System (ADS)

Becker, T.; Clark, J. F.

2012-12-01

Coupled with the unpredictability of a changing climate, the projected growth in human population over the next century requires new and innovative ways to augment already-depleted water supplies. An increasingly popular and promising development is managed aquifer recharge (MAR), a cost-effective method of intentionally storing potable water in groundwater aquifers at engineered sites worldwide. Reclaimed (or recycled) water, defined as cleaned and treated wastewater, will account for a larger portion of MAR water in future years. A crucial component for managing groundwater recharged with reclaimed water is its subsurface travel time. The California Department of Public Health (CDPH), with the most recent draft of regulations issued on November 21, 2011, requires the application of groundwater tracers to demonstrate subsurface residence time. Residence time increases the quality of reclaimed water via soil-aquifer treatment (SAT), which includes mechanisms such as sorption, biological degradation, and microbial inactivation to remove potential contaminants or pathogens. This study addresses the need for an appropriate tracer to determine groundwater residence times near MAR facilities. Standard shallow groundwater dating techniques, such as T/3He and chlorofluorocarbon (CFC) methods, cannot be used because their uncertainties are typically ± 2 years, longer than the target CDPH retention time of ~6 months. These methods also cannot map preferential flow paths. Sulfur hexafluoride (SF6), a nonreactive synthetic gas, is well-established as a deliberate tracer for determining subsurface travel time; however, SF6 is a very strong greenhouse gas and the California Air Resources Board (CARB) is regulating its emission. Other tracers, such as noble gas isotopes, that have successfully determined subsurface retention times are impractical due to their high cost. A multi-tracer experiment at the San Gabriel Spreading Grounds test basin (Montebello Forebay, Los Angeles County, CA, USA) has been in progress since September 6, 2011, following injection of boric acid enriched in boron-10 (10B) and bromide (Br-) tracers. Tracer concentrations are collected at 9 monitoring wells that have pre-experiment estimated travel times between 0.5 to 180 days. Results indicate that 10B-enriched boric acid is an effective deliberate tracer at MAR sites; however, the ion's movement is slightly retarded relative to bromide by the substrate. 10B/Br- travel time ratios range from 1 to 1.4. In addition to the two deliberate geochemical tracers, heat is being evaluated as a possible intrinsic tracer at MAR sites. At the time of the experiment (late summer), reclaimed water was significantly warmer (~20°F) than the native groundwater as it entered the system. Time series are developed from loggers outfitted at each monitoring well, with measurements recorded hourly accurate to one thousandth of a degree. Results are similar to 10B & Br- travel times and validate the potential of heat as an intrinsic tracer.

Performance comparison of three types of high-speed counter-current chromatographs for the separation of components of hydrophilic and hydrophobic color additives.

PubMed

Weisz, Adrian; Ito, Yoichiro

2011-09-09

The performance of three types of high-speed counter-current chromatography (HSCCC) instruments was assessed for their use in separating components in hydrophilic and hydrophobic dye mixtures. The HSCCC instruments compared were: (i) a J-type coil planet centrifuge (CPC) system with a conventional multilayer-coil column, (ii) a J-type CPC system with a spiral-tube assembly-coil column, and (iii) a cross-axis CPC system with a multilayer-coil column. The hydrophilic dye mixture consisted of a sample of FD&C Blue No. 2 that contained mainly two isomeric components, 5,5'- and 5,7'-disulfonated indigo, in the ratio of ∼7:1. The hydrophobic dye mixture consisted of a sample of D&C Red No. 17 (mainly Sudan III) and Sudan II in the ratio of ∼4:1. The two-phase solvent systems used for these separations were 1-butanol/1.3M HCl and hexane/acetonitrile. Each of the three instruments was used in two experiments for the hydrophilic dye mixture and two for the hydrophobic dye mixture, for a total of 12 experiments. In one set of experiments, the lower phase was used as the mobile phase, and in the second set of experiments, the upper phase was used as the mobile phase. The results suggest that: (a) use of a J-type instrument with either a multilayer-coil column or a spiral-tube assembly column, applying the lower phase as the mobile phase, is preferable for separating the hydrophilic components of FD&C Blue No. 2; and (b) use of a J-type instrument with multilayer-coil column, while applying either the upper phase or the lower phase as the mobile phase, is preferable for separating the hydrophobic dye mixture of D&C Red No. 17 and Sudan II. Published by Elsevier B.V.

Applying tattoo dye as a third-harmonic generation contrast agent for in vivo optical virtual biopsy of human skin

NASA Astrophysics Data System (ADS)

Tsai, Ming-Rung; Lin, Chen-Yu; Liao, Yi-Hua; Sun, Chi-Kuang

2013-02-01

Third-harmonic generation (THG) microscopy has been reported to provide intrinsic contrast in elastic fibers, cytoplasmic membrane, nucleus, actin filaments, lipid bodies, hemoglobin, and melanin in human skin. For advanced molecular imaging, exogenous contrast agents are developed for a higher structural or molecular specificity. We demonstrate the potential of the commonly adopted tattoo dye as a THG contrast agent for in vivo optical biopsy of human skin. Spectroscopy and microscopy experiments were performed on cultured cells with tattoo dyes, in tattooed mouse skin, and in tattooed human skin to demonstrate the THG enhancement effect. Compared with other absorbing dyes or nanoparticles used as exogenous THG contrast agents, tattoo dyes are widely adopted in human skin so that future clinical biocompatibility evaluation is relatively achievable. Combined with the demonstrated THG enhancement effect, tattoo dyes show their promise for future clinical imaging applications.

Novel Strategy for Tracking the Microbial Degradation of Azo Dyes with Different Polarities in Living Cells.

PubMed

Liu, Fei; Xu, Meiying; Chen, Xingjuan; Yang, Yonggang; Wang, Haiji; Sun, Guoping

2015-10-06

Direct visualization evidence is important for understanding the microbial degradation mechanisms. To track the microbial degradation pathways of azo dyes with different polar characterizations, sensors based on the fluorescence resonance energy transfer (FRET) from 1,8-naphthalimide to azo dyes were synthesized, in which the quenched fluorescence will recover when the azo bond was cleaved. In living cells, the sensor-tracking experiment showed that the low polarity and hydrophobic azo dye can be taken up into the cells and reduced inside the cells, whereas the high polarity and hydrophilic azo dye can be reduced only outside the cells because of the selective permeability of the cell membranes. These results indicated that there were two different bacterial degradation pathways available for different polarity azo dyes. To our knowledge, no fluorescent sensor has yet been designed for illuminating the microbial degradation mechanisms of organic pollutants with different characteristics.

Evaluation of Aluminium Dross as Adsorbent for Removal of Carcinogenic Congo Red Dye in Wastewater

NASA Astrophysics Data System (ADS)

Zakaria, Mohamad Zulfika Hazielim b.; Zauzi, Nur Syuhada Ahmad; Baini, Rubiyah; Sutan, Norsuzailina Mohamed; Rezaur Rahman, Md

2017-06-01

In this study, aluminium dross waste generated from aluminium smelting industries was employed as adsorbent in removing of congo red dye in aqueous solution. The raw aluminium dross as adsorbent was characterized using Scanning Electron Microscope (SEM), Brunauer-Emmett-Teller (BET) for surface area and X-Ray Fluorescence (XRF) Spectroscopy. Adsorption experiments were carried out by batch system at different adsorbent mass, pH, and initial dye concentration. The results showed that the per cent removal of dye increased as adsorbent mass increased. It was found that 0.4 gram of adsorbent can remove approximately 100 % of dye at pH 9 for dye concentration 20 and 40 ppm. Therefore, it can be concluded that raw aluminium dross without undergone any treatment can be effectively used for the adsorption of congo red in textile wastewater related industries.

Borehole flowmeter logging for the accurate design and analysis of tracer tests.

PubMed

Basiricò, Stefano; Crosta, Giovanni B; Frattini, Paolo; Villa, Alberto; Godio, Alberto

2015-04-01

Tracer tests often give ambiguous interpretations that may be due to the erroneous location of sampling points and/or the lack of flow rate measurements through the sampler. To obtain more reliable tracer test results, we propose a methodology that optimizes the design and analysis of tracer tests in a cross borehole mode by using vertical borehole flow rate measurements. Experiments using this approach, herein defined as the Bh-flow tracer test, have been performed by implementing three sequential steps: (1) single-hole flowmeter test, (2) cross-hole flowmeter test, and (3) tracer test. At the experimental site, core logging, pumping tests, and static water-level measurements were previously carried out to determine stratigraphy, fracture characteristics, and bulk hydraulic conductivity. Single-hole flowmeter testing makes it possible to detect the presence of vertical flows as well as inflow and outflow zones, whereas cross-hole flowmeter testing detects the presence of connections along sets of flow conduits or discontinuities intercepted by boreholes. Finally, the specific pathways and rates of groundwater flow through selected flowpaths are determined by tracer testing. We conclude that the combined use of single and cross-borehole flowmeter tests is fundamental to the formulation of the tracer test strategy and interpretation of the tracer test results. © 2014, National Ground Water Association.

Prediction of down-gradient impacts of DNAPL source depletion using tracer techniques: Laboratory and modeling validation

NASA Astrophysics Data System (ADS)

Jawitz, J. W.; Basu, N.; Chen, X.

2007-05-01

Interwell application of coupled nonreactive and reactive tracers through aquifer contaminant source zones enables quantitative characterization of aquifer heterogeneity and contaminant architecture. Parameters obtained from tracer tests are presented here in a Lagrangian framework that can be used to predict the dissolution of nonaqueous phase liquid (NAPL) contaminants. Nonreactive tracers are commonly used to provide information about travel time distributions in hydrologic systems. Reactive tracers have more recently been introduced as a tool to quantify the amount of NAPL contaminant present within the tracer swept volume. Our group has extended reactive tracer techniques to also characterize NAPL spatial distribution heterogeneity. By conceptualizing the flow field through an aquifer as a collection of streamtubes, the aquifer hydrodynamic heterogeneities may be characterized by a nonreactive tracer travel time distribution, and NAPL spatial distribution heterogeneity may be similarly described using reactive travel time distributions. The combined statistics of these distributions are used to derive a simple analytical solution for contaminant dissolution. This analytical solution, and the tracer techniques used for its parameterization, were validated both numerically and experimentally. Illustrative applications are presented from numerical simulations using the multiphase flow and transport simulator UTCHEM, and laboratory experiments of surfactant-enhanced NAPL remediation in two-dimensional flow chambers.

Application of carbonate cyclostratigraphy and borehole geophysics to delineate porosity and preferential flow in the karst limestone of the Biscayne aquifer, SE Florida

USGS Publications Warehouse

Cunningham, K.J.; Renken, R.A.; Wacker, M.A.; Zygnerski, M.R.; Robinson, E.; Shapiro, A.M.; Wingard, G.L.

2006-01-01

Combined analyses of cores, borehole geophysical logs, and cyclostratigraphy produced a new conceptual hydrogeologic framework for the triple-porosity (matrix, touching-vug, and conduit porosity) karst limestone of the Biscayne aquifer in a 0.65 km2 study area, SE Florida. Vertical lithofacies successions, which have recurrent stacking patterns, fit within high-frequency cycles. We define three ideal high-frequency cycles as: (1) upward-shallowing subtidal cycles, (2) upward-shallowing paralic cycles, and (3) aggradational subtidal cycles. Digital optical borehole images, tracers, and flow meters indicate that there is a predictable vertical pattern of porosity and permeability within the three ideal cycles, because the distribution of porosity and permeability is related to lithofacies. Stratiform zones of high permeability commonly occur just above flooding surfaces in the lower part of upward-shallowing subtidal and paralic cycles, forming preferential groundwater flow zones. Aggradational subtidal cycles are either mostly high-permeability zones or leaky, low-permeability units. In the study area, groundwater flow within stratiform high-permeability zones is through a secondary pore system of touching-vug porosity principally related to molds of burrows and pelecypods and to interburrow vugs. Movement of a dye-tracer pulse observed using a borehole fluid-temperature tool during a conservative tracer test indicates heterogeneous permeability. Advective movement of the tracer appears to be most concentrated within a thin stratiform flow zone contained within the lower part of a high-frequency cycle, indicating a distinctly high relative permeability for this zone. Borehole flow-meter measurements corroborate the relatively high permeability of the flow zone. Identification and mapping of such high-permeability flow zones is crucial to conceptualization of karst groundwater flow within a cyclostratigraphic framework. Many karst aquifers are included in cyclic platform carbonates. Clearly, a cyclostratigraphic approach that translates carbonate aquifer heterogeneity into a consistent framework of correlative units will improve simulation of karst groundwater flow. ?? 2006 Geological Society of America.

Dye bias correction in dual-labeled cDNA microarray gene expression measurements.

PubMed Central

Rosenzweig, Barry A; Pine, P Scott; Domon, Olen E; Morris, Suzanne M; Chen, James J; Sistare, Frank D

2004-01-01

A significant limitation to the analytical accuracy and precision of dual-labeled spotted cDNA microarrays is the signal error due to dye bias. Transcript-dependent dye bias may be due to gene-specific differences of incorporation of two distinctly different chemical dyes and the resultant differential hybridization efficiencies of these two chemically different targets for the same probe. Several approaches were used to assess and minimize the effects of dye bias on fluorescent hybridization signals and maximize the experimental design efficiency of a cell culture experiment. Dye bias was measured at the individual transcript level within each batch of simultaneously processed arrays by replicate dual-labeled split-control sample hybridizations and accounted for a significant component of fluorescent signal differences. This transcript-dependent dye bias alone could introduce unacceptably high numbers of both false-positive and false-negative signals. We found that within a given set of concurrently processed hybridizations, the bias is remarkably consistent and therefore measurable and correctable. The additional microarrays and reagents required for paired technical replicate dye-swap corrections commonly performed to control for dye bias could be costly to end users. Incorporating split-control microarrays within a set of concurrently processed hybridizations to specifically measure dye bias can eliminate the need for technical dye swap replicates and reduce microarray and reagent costs while maintaining experimental accuracy and technical precision. These data support a practical and more efficient experimental design to measure and mathematically correct for dye bias. PMID:15033598

Binding of Phenazinium Dye Safranin T to Polyriboadenylic Acid: Spectroscopic and Thermodynamic Study

PubMed Central

Roy, Snigdha; Das, Suman

2014-01-01

Here, we report results from experiments designed to explore the association of the phenazinium dye safranin T (ST, 3,7-diamino-2,8-dimethyl-5-phenylphenazinium chloride) with single and double stranded form of polyriboadenylic acid (hereafter poly-A) using several spectroscopic techniques. We demonstrate that the dye binds to single stranded polyriboadenylic acid (hereafter ss poly-A) with high affinity while it does not interact at all with the double stranded (ds) form of the polynucleotide. Fluorescence and absorption spectral studies reveal the molecular aspects of binding of ST to single stranded form of the polynucleotide. This observation is also supported by the circular dichroism study. Thermodynamic data obtained from temperature dependence of binding constant reveals that association is driven by negative enthalpy change and opposed by negative entropy change. Ferrocyanide quenching studies have shown intercalative binding of ST to ss poly-A. Experiments on viscosity measurements confirm the binding mode of the dye to be intercalative. The effect of [Na+] ion concentration on the binding process suggests the role of electrostatic forces in the complexation. Present studies reveal the utility of the dye in probing nucleic acid structure. PMID:24498422

Binding of phenazinium dye safranin T to polyriboadenylic acid: spectroscopic and thermodynamic study.

PubMed

Pradhan, Ankur Bikash; Haque, Lucy; Roy, Snigdha; Das, Suman

2014-01-01

Here, we report results from experiments designed to explore the association of the phenazinium dye safranin T (ST, 3,7-diamino-2,8-dimethyl-5-phenylphenazinium chloride) with single and double stranded form of polyriboadenylic acid (hereafter poly-A) using several spectroscopic techniques. We demonstrate that the dye binds to single stranded polyriboadenylic acid (hereafter ss poly-A) with high affinity while it does not interact at all with the double stranded (ds) form of the polynucleotide. Fluorescence and absorption spectral studies reveal the molecular aspects of binding of ST to single stranded form of the polynucleotide. This observation is also supported by the circular dichroism study. Thermodynamic data obtained from temperature dependence of binding constant reveals that association is driven by negative enthalpy change and opposed by negative entropy change. Ferrocyanide quenching studies have shown intercalative binding of ST to ss poly-A. Experiments on viscosity measurements confirm the binding mode of the dye to be intercalative. The effect of [Na⁺] ion concentration on the binding process suggests the role of electrostatic forces in the complexation. Present studies reveal the utility of the dye in probing nucleic acid structure.

Dyeing Insects for Behavioral Assays: the Mating Behavior of Anesthetized Drosophila

PubMed Central

Verspoor, Rudi L.; Heys, Chloe; Price, Thomas A. R.

2015-01-01

Mating experiments using Drosophila have contributed greatly to the understanding of sexual selection and behavior. Experiments often require simple, easy and cheap methods to distinguish between individuals in a trial. A standard technique for this is CO2 anaesthesia and then labelling or wing clipping each fly. However, this is invasive and has been shown to affect behavior. Other techniques have used coloration to identify flies. This article presents a simple and non-invasive method for labelling Drosophila that allows them to be individually identified within experiments, using food coloring. This method is used in trials where two males compete to mate with a female. Dyeing allowed quick and easy identification. There was, however, some difference in the strength of the coloration across the three species tested. Data is presented showing the dye has a lower impact on mating behavior than CO2 in Drosophila melanogaster. The impact of CO2 anaesthesia is shown to depend on the species of Drosophila, with D. pseudoobscura and D. subobscura showing no impact, whereas D. melanogaster males had reduced mating success. The dye method presented is applicable to a wide range of experimental designs. PMID:25938821

Electroadsorption of acilan blau dye from textile effluents by using activated carbon-perlite mixtures.

PubMed

Koparal, A S; Yavuz, Y; Bakir Ogütveren, U

2002-01-01

The feasibility of the removal of dye stuffs from textile effluents by electroadsorption has been investigated. An activated carbon-perlite mixture with a ratio of 8:1 for bipolarity has been used as the adsorbent. Conventional adsorption experiments have also been conducted for comparison. A bipolar trickle reactor has been used in the electroadsorption experiments. The model wastewater has been prepared by using acilan blau dye. Initial dye concentration, bed height between the electrodes, applied potential, flowrate, and the supporting electrolyte concentration have been examined as the parameters affecting the removal efficiency. A local textile plant effluent has been treated in the optimum values of these parameters obtained from the experimental studies. Adsorption kinetics and the amount of adsorbent required to reach the maximum removal efficiency have also been investigated and mass-transfer coefficients have been calculated for adsorption and electroadsorption. The results showed that a removal efficiency of up to 100% can be achieved with energy consumption values of 1.58 kWh/m3 of wastewater treated. However, energy consumption decreases to 0.09 kWh/m3 if an exit dye concentration of 4.65 mg/L is accepted. It can be concluded from this work that this method combines all of the advantages of the activated-carbon adsorption and electrolytic methods for the removal of dyes from wastewater.

Effect of Dye and Conjugation Chemistry on the Biodistribution Profile of Near-Infrared-Labeled Nanobodies as Tracers for Image-Guided Surgery.

PubMed

Debie, Pieterjan; Van Quathem, Jannah; Hansen, Inge; Bala, Gezim; Massa, Sam; Devoogdt, Nick; Xavier, Catarina; Hernot, Sophie

2017-04-03

Advances in optical imaging technologies have stimulated the development of near-infrared (NIR) fluorescently labeled targeted probes for use in image-guided surgery. As nanobodies have already proven to be excellent candidates for molecular imaging, we aimed in this project to design NIR-conjugated nanobodies targeting the tumor biomarker HER2 for future applications in this field and to evaluate the effect of dye and dye conjugation chemistry on their pharmacokinetics during development. IRDye800CW or IRdye680RD were conjugated either randomly (via lysines) or site-specifically (via C-terminal cysteine) to the anti-HER2 nanobody 2Rs15d. After verification of purity and functionality, the biodistribution and tumor targeting of the NIR-nanobodies were assessed in HER2-positive and -negative xenografted mice. Site-specifically IRDye800CW- and IRdye680RD-labeled 2Rs15d as well as randomly labeled 2Rs15d-IRDye680RD showed rapid tumor accumulation and low nonspecific uptake, resulting in high tumor-to-muscle ratios at early time points (respectively 6.6 ± 1.0, 3.4 ± 1.6, and 3.5 ± 0.9 for HER2-postive tumors at 3 h p.i., while <1.0 for HER2-negative tumors at 3 h p.i., p < 0.05). Contrarily, using the randomly labeled 2Rs15d-IRDye800CW, HER2-positive and -negative tumors could only be distinguished after 24 h due to high nonspecific signals. Moreover, both randomly labeled 2Rs15d nanobodies were not only cleared via the kidneys but also partially via the hepatobiliary route. In conclusion, near-infrared fluorescent labeling of nanobodies allows rapid, specific, and high contrast in vivo tumor imaging. Nevertheless, the fluorescent dye as well as the chosen conjugation strategy can affect the nanobodies' properties and consequently have a major impact on their pharmacokinetics.

Optical properties of natural dyes on the dye-sensitized solar cells (DSSC) performance

NASA Astrophysics Data System (ADS)

Pratiwi, D. D.; Nurosyid, F.; Supriyanto, A.; Suryana, R.

2016-11-01

This study reported several natural dyes for application in dye-sensitized solar cells (DSSC). This study aims was to determine the effect of optical absorption properties of natural dyes on efficiency of DSSC. The sandwich structure of DSSC consist of TiO2 as working electrode, carbon layer as counter electrode, natural dyes as photosensitizer, and electrolyte as electron transfer media. The natural dyes used in this experiment were extracted from dragon fruit anthocyanin, mangosteen peels anthocyanin, and red cabbage anthocyanin. The absorbance of dyes solutions and the adsorption of the dye on the surface of TiO2 were characterized using UV-Vis spectrophotometer, the quantum efficiency versus wavelength was characterized using incident photon-to-current efficiency (IPCE) measurement system, and the efficiency of DSSC was calculated using I-V meter. UV-Vis characteristic curves showed that wavelength absorption of anthocyanin dye of red cabbage was 450 - 580 nm, anthocyanin of mangosteen peels was 400 - 480 nm, and anthocyanin of dragon fruit was 400 - 650 nm. Absorption spectra of the dye adsorption on the surface of TiO2 which was resulted in the highest absorbance of red cabbage anthocyanin. IPCE characteristic curves with anthocyanin dye of red cabbage, mangosteen peels anthocyanin, and dragon fruit anthocyanin resulted quantum efficiency of 0.058%; 0.047%; and 0.043%, respectively at wavelength maximum about 430 nm. I-V characteristic curves with anthocyanin dye of red cabbage, mangosteen peels anthocyanin, and dragon fruit anthocyanin resulted efficiency of 0.054%; 0.042%; and 0.024%, respectively.

Observations from borehole dilution logging experiments in fractured crystalline rock under variable hydraulic conditions

USGS Publications Warehouse

Harte, Philip T.; Anderson, Alton; Williams, John H.

2014-01-01

Identifying hydraulically active fractures in low permeability, crystalline-bedrock aquifers requires a variety of geophysical and hydrogeophysical borehole tools and approaches. One such approach is Single Borehole Dilution Tests (SBDT), which in some low flow cases have been shown to provide greater resolution of borehole flow than other logging procedures, such as vertical differential Heat Pulse Flowmeter (HPFM) logging. Because the tools used in SBDT collect continuous profiles of water quality or dye changes, they can identify horizontal flow zones and vertical flow. We used SBDT with a food grade blue dye as a tracer and dual photometer-nephelometer measurements to identify low flow zones.SBDT were conducted at seven wells with open boreholes (exceeding 300 ft). At most of the wells HPFM logs were also collected. The seven wells are set in low-permeability, fractured granite and gneiss rocks underlying a former tetrachloroeythylene (PCE) source area at the Savage Municipal Well Superfund site in Milford, NH. Time series SBDT logs were collected at each of the seven wells under three distinct hydraulic conditions: (1) ambient conditions prior to a pump test at an adjacent well, (2) mid test, after 2-3 days of the start of the pump test, and (3) at the end of the test, after 8-9 days of the pump test. None of the SBDT were conducted under pumping conditions in the logged well. For each condition, wells were initially passively spiked with blue dye once and subsequent time series measurements were made.Measurement accuracy and precision of the photometer tool is important in SBDT when attempting to detect low rates of borehole flow. Tests indicate that under ambient conditions, none of the wells had detectable flow as measured with HPFM logging. With SBDT, 4 of the 7 showed the presence of some very low flow. None of 5 (2 of the 7 wells initially logged with HPFM under ambient conditions were not re-logged) wells logged with the HPFM during the pump test had detectable flow. However, 3 of the 5 wells showed the patterns of very low flow with SBDT during the pump test including pumping induced changes of inflow and outflow patterns at one well.

Indocyanine green-based fluorescent angiography in breast reconstruction

PubMed Central

Chae, Michael P.; Rozen, Warren Matthew

2016-01-01

Background Fluorescent angiography (FA) has been useful for assessing blood flow and assessing tissue perfusion in ophthalmology and other surgical disciplines for decades. In plastic surgery, indocyanine green (ICG) dye-based FA is a relatively novel imaging technology with high potential in various applications. We review the various FA detector systems currently available and critically appraise its utility in breast reconstruction. Methods A review of the published English literature dating from 1950 to 2015 using databases, such as PubMed, Medline, Web of Science, and EMBASE was undertaken. Results In comparison to the old fluorescein dye, ICG has a superior side effect profile and can be accurately detected by various commercial devices, such as SPY Elite (Novadaq, Canada), FLARE (Curadel LLC, USA), PDE-Neo (Hamamatsu Photonics, Japan), Fluobeam 800 (Fluoptics, France), and IC-View (Pulsion Medical Systems AG, Germany). In breast reconstruction, ICG has established as a safer, more accurate tracer agent, in lieu of the traditional blue dyes, for detection of sentinel lymph nodes with radioactive isotopes (99m-Technetium). In prosthesis-based breast reconstruction, intraoperative assessment of the mastectomy skin flap to guide excision of hypoperfused areas translates to improved clinical outcomes. Similarly, in autologous breast reconstructions, FA can be utilized to detect poorly perfused areas of the free flap, evaluate microvascular anastomosis for patency, and assess SIEA vascular territory for use as an alternative free flap with minimal donor site morbidity. Conclusions ICG-based FA is a novel, useful tool for various applications in breast reconstruction. More studies with higher level of evidence are currently lacking to validate this technology. PMID:27047782

Self-healing of optical functions by molecular metabolism in a swollen elastomer

NASA Astrophysics Data System (ADS)

Saito, Mitsunori; Nishimura, Tatsuya; Sakiyama, Kohei; Inagaki, Sota

2012-12-01

Optical functions of organic dyes, e.g., fluorescence or photochromism, tend to degrade by light irradiation, which causes a short lifetime of photonic devices. Self-healing of optical functions is attainable by metabolizing bleached molecules with nonirradiated ones. A polydimethylsiloxane elastomer provides a useful matrix for dye molecules, since its flexible structure with nano-sized intermolecular spaces allows dye diffusion from a reservoir to an operation region. Swelling the elastomer with a suitable solvent promotes both dissolution and diffusion of dye molecules. This self-healing function was demonstrated by an experiment in which a photochromic elastomer exhibited improved durability against a repeated coloring-decoloring process.

Conformational stability and aggregation of therapeutic monoclonal antibodies studied with ANS and Thioflavin T binding.

PubMed

Kayser, Veysel; Chennamsetty, Naresh; Voynov, Vladimir; Helk, Bernhard; Trout, Bernhardt L

2011-01-01

Characterization of aggregation profiles of monoclonal antibodies (mAb) is gaining importance because an increasing number of mAb-based therapeutics are entering clinical studies and gaining marketing approval. To develop a successful formulation, it is imperative to identify the critical biochemical properties of each potential mAb drug candidate. We investigated the conformational change and aggregation of a human IgG1 using external dye-binding experiments with fluorescence spectroscopy and compared the aggregation profiles obtained to the results of size-exclusion chromatography. We show that using an appropriate dye at selected mAb concentration, unfolding or aggregation can be studied. In addition, dye-binding experiments may be used as conventional assays to study therapeutic mAb stability.

Cyclonic entrainment of preconditioned shelf waters into a frontal eddy

NASA Astrophysics Data System (ADS)

Everett, J. D.; Macdonald, H.; Baird, M. E.; Humphries, J.; Roughan, M.; Suthers, I. M.

2015-02-01

The volume transport of nutrient-rich continental shelf water into a cyclonic frontal eddy (entrainment) was examined from satellite observations, a Slocum glider and numerical simulation outputs. Within the frontal eddy, parcels of water with temperature/salinity signatures of the continental shelf (18-19°C and >35.5, respectively) were recorded. The distribution of patches of shelf water observed within the eddy was consistent with the spiral pattern shown within the numerical simulations. A numerical dye tracer experiment showed that the surface waters (≤50 m depth) of the frontal eddy are almost entirely (≥95%) shelf waters. Particle tracking experiments showed that water was drawn into the eddy from over 4° of latitude (30-34.5°S). Consistent with the glider observations, the modeled particles entrained into the eddy sunk relative to their initial position. Particles released south of 33°S, where the waters are cooler and denser, sunk 34 m deeper than their release position. Distance to the shelf was a critical factor in determining the volume of shelf water entrained into the eddy. Entrainment reduced to 0.23 Sv when the eddy was furthest from the shelf, compared to 0.61 Sv when the eddy was within 10 km of the shelf. From a biological perspective, quantifying the entrainment of shelf water into frontal eddies is important, as it is thought to play a significant role in providing an offshore nursery habitat for coastally spawned larval fish.

Femtosecond solvation and the bandshape of polar dyes

NASA Astrophysics Data System (ADS)

Ernsting, N. P.; Eilers-König, N.; Kemeter, K.; Kovalenko, S.; Ruthmann, J.

1996-04-01

The bandwidth of gain spectra for the dye DASPI in polar solvents and its evolution is described by Brownian oscillators with different frequencies for the ground- and excited electronic states. Comparison with experiments reveals a fast relaxation process which is assigned to vibrational redistribution.

Reaeration capacity of the Rock River between Lake Koshkonong, Wisconsin and Rockton, Illinois

USGS Publications Warehouse

Grant, R. Stephen

1978-01-01

The reaeration capacity of the Rock River from Lake Koshkonong, Wisconsin, to Rockton, Illinois, was determined using the energy-dissipation model. The model was calibrated using data from radioactive-tracer measurements in the study reach. Reaeration coefficients (K2) were computed for the annual minimum 7-day mean discharge that occurs on the average of once in 10 years (Q7,10). A time-of-travel model was developed using river discharge, slope, and velocity data from three dye studies. The model was used to estimate traveltime for the Q7,10 for use in the energy-dissipation model. During one radiotracer study, 17 mile per hour winds apparently increased the reaeration coefficient about 40 times. (Woodard-USGS)

Uptake and distribution of Zn65 in the coho salmon egg (Oncorhynchus kisutch)

USGS Publications Warehouse

Wedemeyer, Gary

1968-01-01

1. Zinc uptake and distribution in the developing coho salmon egg was measured using radioisotope tracer techniques.2. The uptake was affected by pH, temperature, Cu2+, 2,4-fluorodinitrobenzene and the azo dye, malachite green; but not by azide ion or 2,4-dinitrophenol.3. About 70 per cent of the total accumulated zinc was bound, rather firmly, to the chorion; about 26 per cent was found in the perivitelline fluid, about 2 per cent in the yolk, and about 1 per cent in the embryo.4. Temperature, pH, inhibitor and kinetic studies indicated that zinc uptake involves physicochemical sorption to the chorion together with passive diffusion into the yolk and embryo.

Taking the Pulse of Plants

NASA Astrophysics Data System (ADS)

Jensen, Kaare H.; Beecher, Sierra; Holbrook, N. Michele; Knoblauch, Michael

2014-11-01

Many biological systems use complex networks of vascular conduits to distribute energy over great distances. Examples include sugar transport in the phloem tissue of vascular plants and cytoplasmic streaming in some slime molds. Detailed knowledge of transport patterns in these systems is important for our fundamental understanding of energy distribution during development and for engineering of more efficient crops. Current techniques for quantifying transport in these microfluidic systems, however, only allow for the determination of either the flow speed or the concentration of material. Here we demonstrate a new method, based on confocal microscopy, which allows us to simultaneously determine velocity and solute concentration by tracking the dispersion of a tracer dye. We attempt to rationalize the observed transport patterns through consideration of constrained optimization problems.

Tracing Injection Fluids in Engineered Geothermal Systems

NASA Astrophysics Data System (ADS)

Rose, P. E.; Leecaster, K.; Mella, M.; Ayling, B.; Bartl, M. H.

2011-12-01

The reinjection of produced fluids is crucial to the effective management of geothermal reservoirs, since it provides a mechanism for maintaining reservoir pressures while allowing for the disposal of a toxic byproduct. Tracers are essential to the proper location of injection wells since they are the only known tool for reliably characterizing the flow patterns of recirculated fluids. If injection wells are placed too close to production wells, then reinjected fluids do not have sufficient residence time to extract heat from the reservoir and premature thermal breakthrough results. If injection wells are placed too far away, then the reservoir risks unacceptable pressure loss. Several thermally stable compounds from a family of very detectable fluorescent organic compounds (the naphthalene sulfonates) were characterized and found to be effective for use as geothermal tracers. Through batch-autoclave reactions, their Arrhenius pseudo-first-order decay-rate constants were determined. An analytical method was developed that allows for the laboratory determination of concentrations in the low parts-per-trillion range. Field experiments in numerous geothermal reservoirs throughout the world have confirmed the laboratory findings. Whereas conservative tracers such as the naphthalene sulfonates are effective tools for indicating interwell flow patterns and for measuring reservoir pore volumes, 'reactive' tracers can be used to constrain fracture surface area, which is the effective area for heat extraction. This is especially important for engineered geothermal system (EGS) wells, since reactive tracers can be used to measure fracture surface area immediately after drilling and while the well stimulation equipment is still on site. The reactive properties of these tracers that can be exploited to constrain fracture surface area are reversible sorption, contrasting diffusivity, and thermal decay. Laboratory batch- and flow-reactor experiments in combination with numerical simulation studies have served to identify candidate compounds for use as reactive tracers. An emerging class of materials that show promise for use as geothermal and EGS tracers are colloidal nanocrystals (quantum dots). These are semiconductor particles that fluoresce as a function of particle size. Preliminary laboratory experimentation has demonstrated that these thermally stable, water-soluble particles can serve as conservative tracers for geothermal applications. Likewise, they show promise as potential reactive tracers, since their surfaces can be modified to be reversibly sorptive and their diameters are sufficiently large to allow for contrasts in diffusivity with solute tracers.

EVALUATION AND SENSITIVITY ANALYSES RESULTS OF THE MESOPUFF II MODEL WITH CAPTEX MEASUREMENTS

EPA Science Inventory

The MESOPUFF II regional Lagrangian puff model has been evaluated and tested against measurements from the Cross-Appalachian Tracer Experiment (CAPTEX) data base in an effort to assess its abilIty to simulate the transport and dispersion of a nonreactive, nondepositing tracer plu...

Toxicological and ecotoxicological assessment of water tracers

NASA Astrophysics Data System (ADS)

Behrens, H.; Beims, U.; Dieter, H.; Dietze, G.; Eikmann, T.; Grummt, T.; Hanisch, H.; Henseling, H.; Käß, W.; Kerndorff, H.; Leibundgut, C.; Müller-Wegener, U.; Rönnefahrt, I.; Scharenberg, B.; Schleyer, R.; Schloz, W.; Tilkes, F.

2001-06-01

Uncertainties regarding possible negative effects on the environment or on human health of authorizing tracing experiments in groundwater and surface waters led to the establishment of a Working Group at the German Federal Environmental Agency (Umweltbundesamt - UBA) for conducting a toxicological and ecotoxicological assessment. A total of 17 water tracers was assessed by the Working Group on the basis of the results of toxicological tests, the available literature, and the group's expert knowledge. In the future, tracers that pose a risk to the environment or to human health should no longer be used. Nevertheless, there are a number of tracers that could be used in hydrogeological and hydrological investigations for water-pollution-control purposes with no adverse environmental impact.

Across North America tracer experiment (ANATEX): Sampling and analysis

NASA Astrophysics Data System (ADS)

Draxler, R. R.; Dietz, R.; Lagomarsino, R. J.; Start, G.

Between 5 January 1987 and 29 March 1987, there were 33 releases of different tracers from each of two sites: Glasgow, MT and St. Cloud, MN. The perfluorocarbon tracers were routinely released in a 3-h period every 2.5 days, alternating between daytime and night-time tracer releases. Ground-level air samples of 24-h duration were taken at 77 sites mostly located near rawinsonde stations east of 105°W and between 26°N and 55°N. Weekly air samples were taken at 12 remote sites between San Diego, CA and Pt. Barrow, AK and between Norway and the Canary Islands. Short-term 6-h samples were collected at ground level and 200 m AGL along an arc of five towers between Tulsa, OK and Green Bay, WI. Aircraft sampling within several hundred kilometers of both tracer release sites was used to establish the initial tracer path. Experimental design required improved sampler performance, new tracers with lower atmospheric backgrounds, and improvements in analytic precision. The advances to the perfluorocarbon tracer system are discussed in detail. Results from the tracer sampling showed that the average and peak concentrations measured over the daily ground-level sampling network were consistent with what would be calculated using mass conservative approaches. however, ground-level samples from individual tracer patterns showed considerable complexity due to vertical stability or the interaction of the tracer plumes with low pressure and frontal systems. These systems could pass right through the tracer plume without appreciable effect. Aircraft tracer measurements are used to confirm the initial tracer trajectory when the narrow plume may miss the coarser spaced ground-level sampling network. Tower tracer measurements showed a more complex temporal structure than evident from the longer duration ground-level sampling sites. Few above background plume measurements were evident in the more distant remote sampling network due to larger than expected uncertainties in the ambient background concentrations.

On the pathways and timescales of intercontinental air pollution transport

NASA Astrophysics Data System (ADS)

Stohl, Andreas; Eckhardt, Sabine; Forster, Caroline; James, Paul; Spichtinger, Nicole

2002-12-01

This paper presents results of a 1-year simulation of the transport of six passive tracers, released over the continents according to an emission inventory for carbon monoxide (CO). Lagrangian concepts are introduced to derive age spectra of the tracer concentrations on a global grid in order to determine the timescales and pathways of pollution export from the continents. Calculating these age spectra is equivalent to simulating many (quasi continuous) plumes, each starting at a different time, which are subsequently merged. Movies of the tracer dispersion have been made available on an Internet website. It is found that emissions from Asia experience the fastest vertical transport, whereas European emissions have the strongest tendency to remain in the lower troposphere. European emissions are transported primarily into the Arctic and appear to be the major contributor to the Arctic haze problem. Tracers from an upwind continent first arrive over a receptor continent in the upper troposphere, typically after some 4 days. Only later foreign tracers also arrive in the lower troposphere. Assuming a 2-day lifetime, the domestic tracers dominate total tracer columns over all continents except over Australia where foreign tracers account for 20% of the tracer mass. In contrast, for a 20-day lifetime even continents with high domestic emissions receive more than half of their tracer burden from foreign continents. Three special regions were identified where tracers are transported to, and tracer dilution is slow. Future field studies therefore should be deployed in the following regions: (1) In the winter, the Asia tracer accumulates over Indonesia and the Indian Ocean, a region speculated to be a stratospheric fountain. (2) In the summer, the highest concentrations of the Asia tracer are found in the Middle East. (3) In the summer, the highest concentrations of the North America tracer are found in the Mediterranean.

Topographic Enhancement of Vertical Mixing in the Southern Ocean

NASA Astrophysics Data System (ADS)

Mashayek, A.; Ferrari, R. M.; Merrifield, S.; St Laurent, L.

2016-02-01

Diapycnal turbulent mixing in the Southern Ocean is believed to play a role in setting the rate of the ocean Meridional Overturning Circulation (MOC), an important element of the global climate system. Whether this role is important, however, depends on the strength of this mixing, which remains poorly qualified on global scale. To address this question, a passive tracer was released upstream of the Drake Passage in 2009 as a part of the Diapycnal and Isopycnal Mixing Experiment in the Southern Ocean (DIMES). The mixing was then inferred from the vertical/diapycnal spreading of the tracer. The mixing was also calculated from microstructure measurements of shear and stratification. The diapycnal turbulent mixing inferred from the tracer was found to be an order of magnitude larger than that estimated with the microstructure probes at various locations along the path of the tracer. While the values inferred from tracer imply a key role played by mixing in setting the MOC, those based on localized measurements suggest otherwise. In this work we use a high resolution numerical ocean model of the Drake Passage region sampled in the DIMES experiment to explain that the difference between the two estimates arise from the large values of mixing encountered by the tracer, when it flows close to the bottom topography. We conclude that the large mixing close to the ocean bottom topography is sufficiently strong to play an important role in setting the Southern Ocean branch of the MOC below 2 km.

Characterization of reactive tracers for C-wells field experiments 1: Electrostatic sorption mechanism, lithium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fuentes, H.R.; Polzer, W.L.; Essington, E.H.

1989-11-01

Lithium (Li{sup +}) was introduced as lithium bromide (LiBr), as a retarded tracer for experiments in the C-wells complex at Yucca Mountain, Nevada Test Site, Nevada. The objective was to evaluate the potential of lithium to sorb predominately by physical forces. lithium was selected as a candidate tracer on the basis of high solubility, good chemical and biological stability, and relatively low sorptivity; lack of bioaccumulation and exclusion as a priority pollutant in pertinent federal environmental regulations; good analytical detectability and low natural background concentrations; and a low cost Laboratory experiments were performed with suspensions of Prow Pass cuttings frommore » drill hole UE-25p{number_sign}1 at depths between 549 and 594 m in J-13 water at a pH of approximately 8 and in the temperature range of 25{degree}C to 45{degree}C. Batch equilibrium and kinetics experiments were performed; estimated thermodynamic constants, relative behavior between adsorption and desorption, and potentiometric studies provided information to infer the physical nature of lithium sorption.« less

Experimental Study on Treatment of Dyeing Wastewater by Activated Carbon Adsorption, Coagulation and Fenton Oxidation

NASA Astrophysics Data System (ADS)

Xiaoxu, SUN; Jin, XU; Xingyu, LI

2017-12-01

In this paper dyeing waste water was simulated by reactive brilliant blue XBR, activated carbon adsorption process, coagulation process and chemical oxidation process were used to treat dyeing waste water. In activated carbon adsorption process and coagulation process, the water absorbance values were measured. The CODcr value of water was determined in Fenton chemical oxidation process. Then, the decolorization rate and COD removal rate were calculated respectively. The results showed that the optimum conditions of activated carbon adsorption process were as follows: pH=2, the dosage of activated carbon was 1.2g/L, the adsorption reaction time was 60 min, and the average decolorization rate of the three parallel experiments was 85.30%. The optimum conditions of coagulation experiment were as follows: pH=8~9, PAC dosage was 70mg/L, stirring time was 20min, standing time was 45min, the average decolorization rate of the three parallel experiments was 74.48%. The optimum conditions for Fenton oxidation were Fe2+ 0.05g/L, H2O2 (30%) 14mL/L, pH=3, reaction time 40min. The average CODcr removal rate was 69.35% in three parallel experiments. It can be seen that in the three methods the activated carbon adsorption treatment of dyeing wastewater was the best one.

Degradation characteristic of monoazo, diazo and anthraquinone dye by UV / H2O2 process

NASA Astrophysics Data System (ADS)

Abidin, Che Zulzikrami Azner; Fahmi, Muhammad Ridwan; Fazara, Md Ali Umi; Nadhirah, Siti Nurfatin

2014-10-01

In this study, the degradation characteristic of monoazo, diazo and anthraquinone dye by UV / H2O2 process was evaluated based on the trend of color, chemical oxygen demand (COD) and total organic carbon (TOC) removal. Three types of dyes consist of monoazo, diazo and anthraquinone dyes were used to compare the degradation mechanism of the dyes. The UV / H2O2 experiments were conducted in a laboratory scale cylindrical glass reactor operated in semi-batch mode. The UV/Vis characterization of monoazo, diazo and anthraquinone dye indicated that the rapid degradation of the dyes by UV / H2O2 process is meaningful with respect to decolourization, as a result of the azo bonds and substitute antraquinone chromophore degradation. However, this process is not efficient for aromatic amines removal. The monoazo MO was difficult to be decolorized than diazo RR120 dye, which imply that number of sulphonic groups in the dye molecules determines the reactivity with hydroxyl radical. The increased in COD removal is the evidence for oxidation and decreased in carbon content of dye molecules. TOC removal analysis shows that low TOC removal of monoazo MO and diazo RR120, as compared to anthraquinone RB19 may indicate an accumulation of by-products that are resistant to the H2O2 photolysis.

Can H-aggregates serve as light-harvesting antennae? Triplet-triplet energy transfer between excited aggregates and monomer thionine in aerosol-OT solutions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Das, S.; Kamat, P.V.

1999-01-07

The cationic dye thionine undergoes slow dissolution in aerosol-OT (AOT) containing solutions of heptane and toluene. By controlling the ratio of [dye]/[AOT], it is possible to obtain varying amounts of monomer, dimer, and higher order aggregates (trimer) in dilute dye solutions. The thionine aggregates exhibit characteristic absorption maxima at 565 and 530 nm for the dimer and trimer forms, respectively. The singlet excited states of these dye aggregates are short-lived ({tau} = 40--63 ps) as they undergo efficient intersystem crossing to generate the triplet excited states. Triplet energy transfer from the excited dye aggregates to monomeric thionine molecules was observedmore » upon excitation with a 532 nm laser pulse. Pulse radiolysis experiments, in which the excited triplet states were generated indirectly, also confirm the finding that the triplet energy cascades down from excited trimer to dimer to monomeric dye. These studies demonstrate the possibility of using H-type dye aggregates as antenna molecules to harvest light energy whereby the aggregate molecules absorb light in different spectral regions and subsequently transfer energy to the monomeric dye.« less

Trapping characteristic of halloysite lumen for methyl orange

NASA Astrophysics Data System (ADS)

Chen, Hao; Yan, Hua; Pei, Zhenzhao; Wu, Junyong; Li, Rongrong; Jin, Yanxian; Zhao, Jie

2015-08-01

The interaction of clay minerals and dyes is an area of great interest especially in the development of novel adsorbents. In this report, we demonstrated interaction of halloysite nanotubes (HNTs) and an anionic dye, methyl orange (MO), through a electrostatic attraction. Halloysite lumen has a trapping characteristic for methyl orange, which is mainly determined by the positively charged nature of the inner surface of HNTs. XRD results confirmed that intercalation of methyl orange into HNTs did not occur. SEM-EDS and photostability results showed that MO molecules were primarily in HNTs lumen. Adsorption isotherm studies revealed an interesting phenomenon, i.e., a sudden increase of adsorption capacity occurred in the initial dye concentration of about 75 mg/L, which was just the dye concentration corresponding to the onset of dye oligomer formation. This suggested dye aggregation state had a decisive influence to the adsorption behavior of MO on the halloysite. BET results demonstrated at low and high dye concentrations, single MO molecule and aggregation of several dimers through hydrophobic interaction, interacted with Al-OH2+ sites on the inner wall, respectively. Desorption experiments showed that MO in HNTs can be completely removed with deionized water, indicating halloysite is a low-cost and efficient adsorbent for anionic dye.

Quantification of the luminescence intensity of natural materials

NASA Technical Reports Server (NTRS)

Watson, R. D.; Hessin, T. D.; Hemphill, W. R.

1973-01-01

Review of some of the results of an evaluation of the use of an airborne Fraunhofer line discriminator (FLD) for the detection of sun-stimulated luminescence emitted by rhodamine WT dye and some other materials. Rhodamine dye is reported to have been detected by airborne FDL in sea water in concentrations of less than 2 ppb. Experiments with a fluorescence spectrometer in the laboratory indicate that luminescence of some samples of crude and refined petroleum exceeds the luminescence intensity of rhodamine dye in concentrations of 10 ppm.

Altering the Microenvironment to Promote Dormancy of Metastatic Breast Cancer Cell in a 3D Bone Culture System

DTIC Science & Technology

2015-04-01

53.1 73.2 0.27 0.24 This loss of collagen was also detected when the dyes were eluted and quantified (Table 1). At three weeks the collagen...proteins, respectively. After washing away excess dye , samples were allowed to dry and were photographed using light microscopy (Right). In...another set of experiments (Table 1,below) the bound dye was eluted and optical density at 540 nm and 605 nm was used to calculate the collagenous and

Altering the Microenvironment to Promote Dormancy of Metastatic Breast Cancer Cell in a 3D Bone Culture System

DTIC Science & Technology

2015-12-01

detected when the dyes were eluted and quantified (Table 1). At three weeks the collagen produced in the presence of ICI was about 45% less than that seen... dye , samples were allowed to dry and were photographed using light microscopy (Right). In another set of experiments (Table1,below) the bound... dye was eluted and optical density at 540 nm and 605 nm was used to calculate the collagenous and non-collagenous proteins, respectively. Samples

Application of Temperature-Dependent Fluorescent Dyes to the Measurement of Millimeter Wave Absorption in Water Applied to Biomedical Experiments

PubMed Central

Popenko, Oleksandr

2014-01-01

Temperature sensitivity of the fluorescence intensity of the organic dyes solutions was used for noncontact measurement of the electromagnetic millimeter wave absorption in water. By using two different dyes with opposite temperature effects, local temperature increase in the capillary that is placed inside a rectangular waveguide in which millimeter waves propagate was defined. The application of this noncontact temperature sensing is a simple and novel method to detect temperature change in small biological objects. PMID:25435859

Application of temperature-dependent fluorescent dyes to the measurement of millimeter wave absorption in water applied to biomedical experiments.

PubMed

Kuzkova, Nataliia; Popenko, Oleksandr; Yakunov, Andrey

2014-01-01

Temperature sensitivity of the fluorescence intensity of the organic dyes solutions was used for noncontact measurement of the electromagnetic millimeter wave absorption in water. By using two different dyes with opposite temperature effects, local temperature increase in the capillary that is placed inside a rectangular waveguide in which millimeter waves propagate was defined. The application of this noncontact temperature sensing is a simple and novel method to detect temperature change in small biological objects.

Simplification and improvement of protein detection in two-dimensional electrophoresis gels with SERVA HPE™ lightning red.

PubMed

Griebel, Anja; Obermaier, Christian; Westermeier, Reiner; Moche, Martin; Büttner, Knut

2013-07-01

A new fluorescent amino-reactive dye has been tested for both labelling proteins prior to electrophoretic separations and between the two steps of two-dimensional electrophoresis. A series of experiments showed, that the labelling of lysines with this dye is compatible with all standard additives used for sample preparation, including reducing substances and carrier ampholytes. Using this dye for pre-labelling considerably simplifies the electrophoresis and detection workflow and provides highly sensitive and quantitative visualisation of proteins.

Ionic Liquid Electrolytes for Flexible Dye-Sensitized Solar Cells

DTIC Science & Technology

2014-09-01

High-Efficiency Solar - Cell Based on Dye-Sensitized Colloidal TiO2 Films,” a DSSC consists of four main components: a photoanode, a counter... solar cell modules. 2. Experiment and Calculations 2.1 Materials Commercial TiO2 paste was purchased from Dyesol, and additional nanophase TiO2 ...B.; Grätzel, M. A Low-Cost, High Efficiency Solar Cell Based on Dye_Sensitized Colloidal TiO2 Films. Nature 1991, 353, 737–740. 2. Snaith, H. J

Using the tracer-dilution discharge method to develop streamflow records for ice-affected streams in Colorado

USGS Publications Warehouse

Capesius, Joseph P.; Sullivan, Joseph R.; O'Neill, Gregory B.; Williams, Cory A.

2005-01-01

Accurate ice-affected streamflow records are difficult to obtain for several reasons, which makes the management of instream-flow water rights in the wintertime a challenging endeavor. This report documents a method to improve ice-affected streamflow records for two gaging stations in Colorado. In January and February 2002, the U.S. Geological Survey, in cooperation with the Colorado Water Conservation Board, conducted an experiment using a sodium chloride tracer to measure streamflow under ice cover by the tracer-dilution discharge method. The purpose of this study was to determine the feasibility of obtaining accurate ice-affected streamflow records by using a sodium chloride tracer that was injected into the stream. The tracer was injected at two gaging stations once per day for approximately 20 minutes for 25 days. Multiple-parameter water-quality sensors at the two gaging stations monitored background and peak chloride concentrations. These data were used to determine discharge at each site. A comparison of the current-meter streamflow record to the tracer-dilution streamflow record shows different levels of accuracy and precision of the tracer-dilution streamflow record at the two sites. At the lower elevation and warmer site, Brandon Ditch near Whitewater, the tracer-dilution method overestimated flow by an average of 14 percent, but this average is strongly biased by outliers. At the higher elevation and colder site, Keystone Gulch near Dillon, the tracer-dilution method experienced problems with the tracer solution partially freezing in the injection line. The partial freezing of the tracer contributed to the tracer-dilution method underestimating flow by 52 percent at Keystone Gulch. In addition, a tracer-pump-reliability test was conducted to test how accurately the tracer pumps can discharge the tracer solution in conditions similar to those used at the gaging stations. Although the pumps were reliable and consistent throughout the 25-day study period, the pumps underdischarged the tracer by 5.8-15.9 percent as compared to the initial pumping rate setting, which may explain some of the error in the tracer-dilution streamflow record as compared to current-meter streamflow record.

Statistical atmospheric inversion of local gas emissions by coupling the tracer release technique and local-scale transport modelling: a test case with controlled methane emissions

NASA Astrophysics Data System (ADS)

Ars, Sébastien; Broquet, Grégoire; Yver Kwok, Camille; Roustan, Yelva; Wu, Lin; Arzoumanian, Emmanuel; Bousquet, Philippe

2017-12-01

This study presents a new concept for estimating the pollutant emission rates of a site and its main facilities using a series of atmospheric measurements across the pollutant plumes. This concept combines the tracer release method, local-scale atmospheric transport modelling and a statistical atmospheric inversion approach. The conversion between the controlled emission and the measured atmospheric concentrations of the released tracer across the plume places valuable constraints on the atmospheric transport. This is used to optimise the configuration of the transport model parameters and the model uncertainty statistics in the inversion system. The emission rates of all sources are then inverted to optimise the match between the concentrations simulated with the transport model and the pollutants' measured atmospheric concentrations, accounting for the transport model uncertainty. In principle, by using atmospheric transport modelling, this concept does not strongly rely on the good colocation between the tracer and pollutant sources and can be used to monitor multiple sources within a single site, unlike the classical tracer release technique. The statistical inversion framework and the use of the tracer data for the configuration of the transport and inversion modelling systems should ensure that the transport modelling errors are correctly handled in the source estimation. The potential of this new concept is evaluated with a relatively simple practical implementation based on a Gaussian plume model and a series of inversions of controlled methane point sources using acetylene as a tracer gas. The experimental conditions are chosen so that they are suitable for the use of a Gaussian plume model to simulate the atmospheric transport. In these experiments, different configurations of methane and acetylene point source locations are tested to assess the efficiency of the method in comparison to the classic tracer release technique in coping with the distances between the different methane and acetylene sources. The results from these controlled experiments demonstrate that, when the targeted and tracer gases are not well collocated, this new approach provides a better estimate of the emission rates than the tracer release technique. As an example, the relative error between the estimated and actual emission rates is reduced from 32 % with the tracer release technique to 16 % with the combined approach in the case of a tracer located 60 m upwind of a single methane source. Further studies and more complex implementations with more advanced transport models and more advanced optimisations of their configuration will be required to generalise the applicability of the approach and strengthen its robustness.

Urban Pollutant Transport and Infiltration into Buildings Using Perfluorocarbon Tracers.

PubMed

Matthews, James C; Bacak, Asan; Khan, M Anwar H; Wright, Matthew D; Priestley, Michael; Martin, Damien; Percival, Carl J; Shallcross, Dudley E

2017-02-21

People spend the majority of their time indoors and therefore the quality of indoor air is worthy of investigation; indoor air quality is affected by indoor sources of pollutants and from pollutants entering buildings from outdoors. In this study, unique perfluorocarbon tracers were released in five experiments at a 100 m and ~2 km distance from a large university building in Manchester, UK and tracer was also released inside the building to measure the amount of outdoor material penetrating into buildings and the flow of material within the building itself. Air samples of the tracer were taken in several rooms within the building, and a CO₂ tracer was used within the building to estimate air-exchange rates. Air-exchange rates were found to vary between 0.57 and 10.90 per hour. Indoor perfluorocarbon tracer concentrations were paired to outdoor tracer concentrations, and in-out ratios were found to vary between 0.01 and 3.6. The largest room with the lowest air-exchange rate exhibited elevated tracer concentrations for over 60 min after the release had finished, but generally had the lowest concentrations, the room with the highest ventilation rates had the highest concentration over 30 min, but the peak decayed more rapidly. Tracer concentrations indoors compared to outdoors imply that pollutants remain within buildings after they have cleared outside, which must be considered when evaluating human exposure to outdoor pollutants.

Urban Pollutant Transport and Infiltration into Buildings Using Perfluorocarbon Tracers

PubMed Central

Matthews, James C.; Bacak, Asan; Khan, M. Anwar H.; Wright, Matthew D.; Priestley, Michael; Martin, Damien; Percival, Carl J.; Shallcross, Dudley E.

2017-01-01

People spend the majority of their time indoors and therefore the quality of indoor air is worthy of investigation; indoor air quality is affected by indoor sources of pollutants and from pollutants entering buildings from outdoors. In this study, unique perfluorocarbon tracers were released in five experiments at a 100 m and ~2 km distance from a large university building in Manchester, UK and tracer was also released inside the building to measure the amount of outdoor material penetrating into buildings and the flow of material within the building itself. Air samples of the tracer were taken in several rooms within the building, and a CO2 tracer was used within the building to estimate air-exchange rates. Air-exchange rates were found to vary between 0.57 and 10.90 per hour. Indoor perfluorocarbon tracer concentrations were paired to outdoor tracer concentrations, and in-out ratios were found to vary between 0.01 and 3.6. The largest room with the lowest air-exchange rate exhibited elevated tracer concentrations for over 60 min after the release had finished, but generally had the lowest concentrations, the room with the highest ventilation rates had the highest concentration over 30 min, but the peak decayed more rapidly. Tracer concentrations indoors compared to outdoors imply that pollutants remain within buildings after they have cleared outside, which must be considered when evaluating human exposure to outdoor pollutants. PMID:28230812

Dispersion of Perfluorocarbon Tracers within the Salt Lake Valley during VTMX 2000

NASA Astrophysics Data System (ADS)

Fast, Jerome D.; Allwine, K. Jerry; Dietz, Russell N.; Clawson, Kirk L.; Torcolini, Joel C.

2006-06-01

Six perfluorocarbon tracer experiments were conducted in Salt Lake City, Utah, during October 2000 as part of the Vertical Transport and Mixing (VTMX) field campaign. Four tracers were released at different sites to obtain information on dispersion during stable conditions within down-valley flow, canyon outflow, and interacting circulations in the downtown area. Some of the extensive tracer data that were collected are presented in the context of the meteorological field campaign measurements. Tracer measurements at building-top sites in the downtown area and along the lower slopes of the Wasatch Front indicated that vertical mixing processes transported material up to at least 180 m above the valley floor, although model simulations suggest that tracers were transported upward to much higher elevations. Tracer data provided evidence of downward mixing of canyon outflow, upward mixing within down-valley flow, horizontal transport above the surface stable layer, and transport within horizontal eddies produced by the interaction of canyon and down-valley flows. Although point meteorological measurements are useful in evaluating the forecasts produced by mesoscale models, the tracer data provide valuable information on how the time-varying three-dimensional mean and turbulent motions over urban and valley spatial scales affect dispersion. Although the mean tracer transport predicted by the modeling system employed in this study was qualitatively similar to the measurements, improvements are needed in the treatment of turbulent vertical mixing.

Combinatorial effects of charge characteristics and hydrophobicity of silk fibroin on the sorption and release of charged dyes.

PubMed

Wongpanit, Panya; Rujiravanit, Ratana

2012-01-01

The present study was designed to examine the influence of the charge characteristics of silk fibroin on the sorption and release of charged dyes by varying the pH values of the sorption and release media as well as types of charged dyes. Negatively charged dyes (phenol red and chromotrope 2R) and positively charged dyes (crystal violet and indoine blue) were used as the model compounds. Silk fibroin films were prepared by using a solution casting technique. The prepared films were then treated with an aqueous methanol solution or annealed with water to control their conformation. The sorption behavior of the model compounds made by the methanol-treated and water-annealed silk fibroin films was investigated. Compared to the water- annealed silk fibroin films, a higher hydrophobicity of the methanol-treated silk fibroin films caused a higher sorption of the hydrophobic dyes. The dye molecules had a fairly high affinity to the silk fibroin film, even though the dye and the matrix possessed the same charge. However, in the presence of two charged groups in a single dye molecule, the electrostatic repulsion become more dominant. Stronger interaction was observed when the charges of the film and the dye were opposite. The results of dye sorption and release experiments showed that the degree of synergism or competition between electrostatic and hydrophobic interactions directly depended on the charges and chemical structure of the dye molecules and the environmental pH conditions of the existing silk fibroin film.

Diapycnal diffusivity in the core and oxycline of the tropical North Atlantic oxygen minimum zone

NASA Astrophysics Data System (ADS)

Köllner, Manuela; Visbeck, Martin; Tanhua, Toste; Fischer, Tim

2016-08-01

Diapycnal diffusivity estimates from two Tracer Release Experiments (TREs) and microstructure measurements in the oxycline and core of the oxygen minimum zone (OMZ) in the Eastern Tropical North Atlantic (ETNA) are compared. For the first time, two TREs within the same area at different depths were realized: the Guinea Upwelling Tracer Release Experiment (GUTRE) initiated in 2008 in the oxycline at approximately 320 m depth, and the Oxygen Supply Tracer Release Experiment (OSTRE) initiated in 2012 in the core of the OMZ at approximately 410 m depth. The mean diapycnal diffusivity Dz was found to be insignificantly smaller in the OMZ core with (1.06 ± 0.24) × 10- 5 m2 s- 1 compared to (1.11 ± 0.22) × 10- 5 m2 s- 1 90 m shallower in the oxycline. Unexpectedly, GUTRE tracer was detected during two of the OSTRE surveys which showed that the estimated diapycnal diffusivity from GUTRE over a time period of seven years was within the uncertainty of the previous estimates over a time period of three years. The results are consistent with the Dz estimates from microstructure measurements and demonstrate that Dz does not vary significantly vertically in the OMZ within the depth range of 200-600 m and does not change with time. The presence of a seamount chain in the vicinity of the GUTRE injection region did not cause enhanced Dz compared to the smoother bottom topography of the OSTRE injection region, although the analysis of vertical shear spectra from ship ADCP data showed elevated internal wave energy level in the seamount vicinity. However, the two tracer patches covered increasingly overlapping areas with time and thus spatially integrated increasingly similar fields of local diffusivity, as well as the difference in local stratification counteracted the influence of roughness on Dz. For both experiments no significant vertical displacements of the tracer were observed, thus diapycnal upwelling within the ETNA OMZ is below the uncertainty level of 5 m yr- 1.

Highly Unstable Double-Diffusive Finger Convection in a Hele-Shaw Cell: Baseline Experimental Data for Evaluation of Numerical Models

DOE Office of Scientific and Technical Information (OSTI.GOV)

PRINGLE,SCOTT E.; COOPER,CLAY A.; GLASS JR.,ROBERT J.

An experimental investigation was conducted to study double-diffusive finger convection in a Hele-Shaw cell by layering a sucrose solution over a more-dense sodium chloride (NaCl) solution. The solutal Rayleigh numbers were on the order of 60,000, based upon the height of the cell (25 cm), and the buoyancy ratio was 1.2. A full-field light transmission technique was used to measure a dye tracer dissolved in the NaCl solution. They analyze the concentration fields to yield the temporal evolution of length scales associated with the vertical and horizontal finger structure as well as the mass flux. These measures show a rapidmore » progression through two early stages to a mature stage and finally a rundown period where mass flux decays rapidly. The data are useful for the development and evaluation of numerical simulators designed to model diffusion and convection of multiple components in porous media. The results are useful for correct formulation at both the process scale (the scale of the experiment) and effective scale (where the lab-scale processes are averaged-up to produce averaged parameters). A fundamental understanding of the fine-scale dynamics of double-diffusive finger convection is necessary in order to successfully parameterize large-scale systems.« less

Normalized sensitivities and parameter identifiability of in situ diffusion experiments on Callovo Oxfordian clay at Bure site

NASA Astrophysics Data System (ADS)

Samper, J.; Dewonck, S.; Zheng, L.; Yang, Q.; Naves, A.

Diffusion of inert and reactive tracers (DIR) is an experimental program performed by ANDRA at Bure underground research laboratory in Meuse/Haute Marne (France) to characterize diffusion and retention of radionuclides in Callovo-Oxfordian (C-Ox) argillite. In situ diffusion experiments were performed in vertical boreholes to determine diffusion and retention parameters of selected radionuclides. C-Ox clay exhibits a mild diffusion anisotropy due to stratification. Interpretation of in situ diffusion experiments is complicated by several non-ideal effects caused by the presence of a sintered filter, a gap between the filter and borehole wall and an excavation disturbed zone (EdZ). The relevance of such non-ideal effects and their impact on estimated clay parameters have been evaluated with numerical sensitivity analyses and synthetic experiments having similar parameters and geometric characteristics as real DIR experiments. Normalized dimensionless sensitivities of tracer concentrations at the test interval have been computed numerically. Tracer concentrations are found to be sensitive to all key parameters. Sensitivities are tracer dependent and vary with time. These sensitivities are useful to identify which are the parameters that can be estimated with less uncertainty and find the times at which tracer concentrations begin to be sensitive to each parameter. Synthetic experiments generated with prescribed known parameters have been interpreted automatically with INVERSE-CORE 2D and used to evaluate the relevance of non-ideal effects and ascertain parameter identifiability in the presence of random measurement errors. Identifiability analysis of synthetic experiments reveals that data noise makes difficult the estimation of clay parameters. Parameters of clay and EdZ cannot be estimated simultaneously from noisy data. Models without an EdZ fail to reproduce synthetic data. Proper interpretation of in situ diffusion experiments requires accounting for filter, gap and EdZ. Estimates of the effective diffusion coefficient and the porosity of clay are highly correlated, indicating that these parameters cannot be estimated simultaneously. Accurate estimation of De and porosities of clay and EdZ is only possible when the standard deviation of random noise is less than 0.01. Small errors in the volume of the circulation system do not affect clay parameter estimates. Normalized sensitivities as well as the identifiability analysis of synthetic experiments provide additional insight on inverse estimation of in situ diffusion experiments and will be of great benefit for the interpretation of real DIR in situ diffusion experiments.

Tracer concentration profiles measured in central London as part of the REPARTEE campaign

NASA Astrophysics Data System (ADS)

Martin, D.; Petersson, K. F.; White, I. R.; Henshaw, S. J.; Nickless, G.; Lovelock, A.; Barlow, J. F.; Dunbar, T.; Wood, C. R.; Shallcross, D. E.

2009-11-01

There have been relatively few tracer experiments carried out that have looked at vertical plume spread in urban areas. In this paper we present results from cyclic perfluorocarbon tracer experiments carried out in 2006 and 2007 in central London centred on the BT Tower as part of the REPARTEE (Regent's Park and Tower Environmental Experiment) campaign. The height of the tower gives a unique opportunity to study dispersion over a large vertical gradient. These gradients are then compared with classical Gaussian profiles of the relevant stability classes over a range of distances as well as interpretation of data with reference to both anemometry and LIDAR measurements made. Data are then compared with an operational model and contrasted with data taken in central London as part of the DAPPLE campaign looking at dosage compared with non-dimensionalised distance from source. Such analysis illustrates the feasibility of the use of these empirical correlations over these prescribed distances in central London.

Soil matrix tracer contamination and canopy recycling did not impair ¹³CO₂ plant-soil pulse labelling experiments.

PubMed

Barthel, Matthias; Sturm, Patrick; Knohl, Alexander

2011-09-01

When conducting (13)CO(2) plant-soil pulse labelling experiments, tracer material might cause unwanted side effects which potentially affect δ(13)C measurements of soil respiration (δ(13)C(SR)) and the subsequent data interpretation. First, when the soil matrix is not isolated from the atmosphere, contamination of the soil matrix with tracer material occurs leading to a physical back-diffusion from soil pores. Second, when using canopy chambers continuously, (13)CO(2) is permanently re-introduced into the atmosphere due to leaf respiration which then aids re-assimilation of tracer material by the canopy. Accordingly, two climate chamber experiments on European beech saplings (Fagus sylvatica L.) were conducted to evaluate the influence of soil matrix (13)CO(2) contamination and canopy recycling on soil (13)CO(2) efflux during (13)CO(2) plant-soil pulse labelling experiments. For this purpose, a combined soil/canopy chamber system was developed which separates soil and canopy compartments in order to (a) prevent diffusion of (13)C tracer into the soil chamber during a (13)CO(2) canopy pulse labelling and (b) study stable isotope processes in soil and canopy individually and independently. In combination with laser spectrometry measuring CO(2) isotopologue mixing ratios at a rate of 1 Hz, we were able to measure δ(13)C in canopy and soil at very high temporal resolution. For the soil matrix contamination experiment, (13)CO(2) was applied to bare soil, canopy only or, simultaneously, to soil and canopy of the beech trees. The obtained δ(13)C(SR) fluxes from the different treatments were then compared with respect to label re-appearance, first peak time and magnitude. By determining the δ(13)C(SR) decay of physical (13)CO(2) back-diffusion from bare soils (contamination), it was possible to separate biological and physical components in δ(13)C(SR) of a combined flux of both. A second pulse labelling experiment, with chambers permanently enclosing the canopy, revealed that (13)CO(2) recycling at canopy level had no effect on δ(13)C(SR) dynamics.

Topographic enhancement of vertical turbulent mixing in the Southern Ocean

PubMed Central

Mashayek, A.; Ferrari, R.; Merrifield, S.; Ledwell, J. R.; St Laurent, L.; Garabato, A. Naveira

2017-01-01

It is an open question whether turbulent mixing across density surfaces is sufficiently large to play a dominant role in closing the deep branch of the ocean meridional overturning circulation. The diapycnal and isopycnal mixing experiment in the Southern Ocean found the turbulent diffusivity inferred from the vertical spreading of a tracer to be an order of magnitude larger than that inferred from the microstructure profiles at the mean tracer depth of 1,500 m in the Drake Passage. Using a high-resolution ocean model, it is shown that the fast vertical spreading of tracer occurs when it comes in contact with mixing hotspots over rough topography. The sparsity of such hotspots is made up for by enhanced tracer residence time in their vicinity due to diffusion toward weak bottom flows. The increased tracer residence time may explain the large vertical fluxes of heat and salt required to close the abyssal circulation. PMID:28262808

Getting Things Sorted With Lagrangian Coherent Structures

NASA Astrophysics Data System (ADS)

Atis, Severine; Peacock, Thomas; Environmental Dynamics Laboratory Team

2014-11-01

The dispersion of a tracer in a fluid flow is influenced by the Lagrangian motion of fluid elements. Even in laminar regimes, the irregular chaotic behavior of a fluid flow can lead to effective stirring that rapidly redistributes a tracer throughout the domain. For flows with arbitrary time-dependence, the modern approach of Lagrangian Coherent Structures (LCSs) provide a method for identifying the key material lines that organize flow transport. When the advected tracer particles possess a finite size and nontrivial shape, however, their dynamics can differ markedly from passive tracers, thus affecting the dispersion phenomena. We present details of numerical simulations and laboratory experiments that investigate the behavior of finite size particles in 2-dimensional chaotic flows. We show that the shape and the size of the particles alter the underlying LCSs, facilitating segregation between tracers of different shape in the same flow field.

Multifractal detrended fluctuation analysis of intensity time series of photons scattered by tracer particles within a polymeric gel

NASA Astrophysics Data System (ADS)

Telesca, Luciano; Haro-Pérez, Catalina; Moreno-Torres, L. Rebeca; Ramirez-Rojas, Alejandro

2018-01-01

Some properties of spatial confinement of tracer colloidal particles within polyacrylamide dispersions are studied by means of the well-known dynamic light scattering (DLS) technique. DLS allows obtaining sequences of elapsed times of scattered photons. In this work, the aqueous polyacrylamide dispersion has no crosslinking and the volume fraction occupied by the tracer particles is 0.02 %. Our experimental setup provides two sequences of photons scattered by the same scattering volume that corresponds to two simultaneous experiments (Channel A and Channel B). By integration of these sequences, the intensity time series are obtained. We find that both channels are antipersistent with Hurst exponent, H ∼0.43 and 0.36, respectively. The antipersistence of the intensity time series indicates a subdiffusive dynamics of the tracers in the polymeric network, which is in agreement with the time dependence of the tracer's mean square displacement.

Deep-red to near-infrared fluorescent dyes: Synthesis, photophysical properties, and application in cell imaging

NASA Astrophysics Data System (ADS)

Li, Qi; Liu, Weimin; Wu, Jiasheng; Zhou, Bingjiang; Niu, Guangle; Zhang, Hongyan; Ge, Jiechao; Wang, Pengfei

2016-07-01

More and more attention has been paid to the design of new fluorescent imaging agents with good photostability and water solubility, especially those with emissions in the deep-red and near-infrared regions. In this work, we designed and synthesized four novel fluorescent dyes with deep-red or NIR fluorescence by hybridizing coumarin and pyronin moieties based on our previous work. Introduction of carboxylic acid in the dyes not only imparted the dyes with water solubility but also provided a versatile sensing platform for designing the fluorescent probes and sensors of biomolecules. The photophysical properties of these new dyes were investigated through absorption and fluorescence spectroscopy. Cell imaging experiments showed that esterification products could selectively stain lysosomes with good photostability, thereby indicating that they could be useful in the development of fluorescent probes for bioimaging.

Experimenting with cameraless photography using turmeric and borax: an introduction to photophysics

NASA Astrophysics Data System (ADS)

Appleyard, S. J.

2012-07-01

An alcoholic extract of the spice turmeric can be used to create a light-sensitive dye that can be used to stain paper. On exposure to sunlight, the dyed paper can be used to capture photographic images of flat objects or reproduce existing images through the preferential degradation of the dye in light-exposed areas over a time period of a few hours. The images can be developed and preserved by spraying the exposed paper with a dilute solution of borax, which forms coloured organo-boron complexes that limit further degradation of the dye and enhance the colour of the image. Similar photochemical reactions that lead to the degradation of the turmeric dye can also be used for reducing the organic pollution load in wastewater produced by many industrial processes and in dye-sensitized solar cells for producing electricity.

Nitration of Naphthol: A Laboratory Experiment.

ERIC Educational Resources Information Center

Mowery, Dwight F.

1982-01-01

Products of nitrations, upon distillation or steam distillation, may produce dermatitis in some students. A procedure for nitration of beta-naphthol producing a relatively non-volatile product not purified by steam distillation is described. Nitration of alpha-naphthol by the same procedure yields Martius Yellow dye which dyes wool yellow or…

Assessment of electrical conductivity as a surrogate measurement for water samples in a tracer injection experiment

USDA-ARS?s Scientific Manuscript database

The transport behavior of solutes in streams depends on chemical, physical, biological, and hydrodynamic processes. Although it is a very complex system, it is known that this behavior is greatly influenced by surface and subsurface flows. For this reason, tracer injection in the water flows is one ...

GREEN RIVER AIR QUALITY MODEL DEVELOPMENT: METEOROGICAL AND TRACER DATA-FIELD STUDY IN BRUSH VALLEY, COLORADO, JULY-AUGUST, 1982

EPA Science Inventory

Special meteorological and atmospheric tracer studies were conducted during a three-week period in July and August of 1982 in the Brush Creek Valley of northwestern Colorado. The experiments were conducted by the U.S. Department of Energy's Pacific Northwest Laboratory (PNL) as p...

Is fluorescein-guided technique able to help in resection of high-grade gliomas?

PubMed

Acerbi, Francesco; Broggi, Morgan; Eoli, Marica; Anghileri, Elena; Cavallo, Claudio; Boffano, Carlo; Cordella, Roberto; Cuppini, Lucia; Pollo, Bianca; Schiariti, Marco; Visintini, Sergio; Orsi, Chiara; La Corte, Emanuele; Broggi, Giovanni; Ferroli, Paolo

2014-02-01

Fluorescein, a dye that is widely used as a fluorescent tracer, accumulates in cerebral areas where the blood-brain barrier is damaged. This quality makes it an ideal dye for the intraoperative visualization of high-grade gliomas (HGGs). The authors report their experience with a new fluorescein-guided technique for the resection of HGGs using a dedicated filter on the surgical microscope. The authors initiated a prospective Phase II trial (FLUOGLIO) in September 2011 with the objective of evaluating the safety of fluorescein-guided surgery for HGGs and obtaining preliminary evidence regarding its efficacy for this purpose. To be eligible for participation in the study, a patient had to have suspected HGG amenable to complete resection of the contrast-enhancing area. The present report is based on the analysis of the short- and long-term results in 20 consecutive patients with HGGs (age range 45-74 years), enrolled in the study since September 2011. In all cases fluorescein (5-10 mg/kg) was injected intravenously after intubation. Tumor resection was performed with microsurgical technique and fluorescence visualization by means of BLUE 400 or YELLOW 560 filters on a Pentero microscope. The median preoperative tumor volume was 30.3 cm(3) (range 2.4-87.8 cm(3)). There were no adverse reactions related to fluorescein administration. Complete removal of contrast-enhanced tumor was achieved in 80% of the patients. The median duration of follow-up was 10 months. The 6-months progression-free survival rate was 71.4% and the median survival was 11 months. Analysis of these 20 cases suggested that fluorescein-guided technique with a dedicated filter on the surgical microscope is safe and allows a high rate of complete resection of contrast-enhanced tumor as determined on early postoperative MRI. Clinical trial registration no.: 2011-002527-18 (EudraCT).

Wind tunnel measurements of pollutant turbulent fluxes in urban intersections

NASA Astrophysics Data System (ADS)

Carpentieri, Matteo; Hayden, Paul; Robins, Alan G.

2012-01-01

Wind tunnel experiments have been carried out at the EnFlo laboratory to measure mean and turbulent tracer fluxes in geometries of real street canyon intersections. The work was part of the major DAPPLE project, focussing on the area surrounding the intersection between Marylebone Road and Gloucester Place in Central London, UK. Understanding flow and dispersion in urban streets is a very important issue for air quality management and planning, and turbulent mass exchange processes are important phenomena that are very often neglected in urban modelling studies. The adopted methodology involved the combined use of laser Doppler anemometry and tracer concentration measurements. This methodology was applied to quantify the mean and turbulent flow and dispersion fields within several street canyon intersections. Vertical profiles of turbulent tracer flux were also measured. The technique, despite a number of limitations, proved reliable and allowed tracer balance calculations to be undertaken in the selected street canyon intersections. The experience gained in this work will enable much more precise studies in the future as issues affecting the accuracy of the experimental technique have been identified and resolved.

Dynamics of tropical oxygen minium zones (OMZ): The role of vertical mixing and eddy stirring in ventilating the OMZ in the tropical Atlantic

NASA Astrophysics Data System (ADS)

Visbeck, M.; Banyte, D.; Brandt, P.; Dengler, M.; Fischer, T.; Karstensen, J.; Krahmann, G.; Tanhua, T. S.; Stramma, L.

2013-12-01

Equatorial Dynamics provide an essential influence on the ventilation pathways of well oxygenated surface water on their route to tropical oxygen minimum zones (OMZ). The large scale wind driven circulation shield OMZs from the direct ventilation pathways. They are located in the so called ';shadow zones' equator ward of the subtropical gyres. From what is known most of the oxygen is supplied via pathways from the western boundary modulated by the complex zonal equatorial current system and marginally by vertical mixing. What was less clear is which of the possible pathways are most effective in transporting dissolved oxygen towards the OMZ. A collaborative research program focused on the dynamics of oxygen minimum zones, called SFB754 "Climate - Biogeochemistry Interactions in the Tropical Ocean", allowed us to conduct two ocean tracer release experiments to investigate the vertical and horizontal mixing rates and associated oxygen transports. Specifically we report on the first deliberate tracer release experiment (GUTRE, Guinea Upwelling Tracer Release Experiment) in the tropical northeast Atlantic carried out in order to determine the diapycnal diffusivity coefficient in the upper layer of the OMZ. A tracer (CF3SF5) was injected in spring of 2008 and subsequently measured during three designated tracer survey cruises until the end of 2010. We found that, generally, the diffusivity is larger than expected for low latitudes and similar in magnitude to what has previously been experimentally determined in the Canary Basin. When combining the tracer study with estimates of diapycnal mixing based on microstructure profiling and a newly developed method using ship board ADCPs we were able to compute the vertical oxygen flux and its divergence for the OMZ. To our surprise, the vertical flux of oxygen by diapycnal mixing provides about 30% of the total ventilation. The estimate was derived from the simple advection-diffusion model taking into account moored and ship based velocity observations of the equatorial current systems along 23°W in the tropical Atlantic. However, the advective pathways are less certain and possibly more variable. Firstly, the strength of lateral eddy stirring and the role in oxygen transport is less well known, and is the focus of the ongoing second tracer release experiment (OSTRE, Oxygen Supply Tracer Release Experiment). Secondly, the analysis of historical data from the equatorial regime suggests that the observed decline in dissolved oxygen in the tropical North Atlantic might in part be a consequence of reduced horizontal ventilation by equatorial intermediate current systems. The uncertainty of the long-term variability of the circulation in the equatorial systems and additional uncertainty in the biogeochemical consumption rates provide a challenge for estimates of the future of the OMZ regimes. Model prediction of future oxygen changes depend on the models ability to reproduce the observed oxygen ventilation pathways and processes, which might limit the prediction's accuracy.

The Numerical Simulation of a Tracer-Release Field Project to Study Motion within the Nocturnal Boundary Layer

NASA Astrophysics Data System (ADS)

Werth, D. W.; Leclerc, M. Y.; Buckley, R.; Parker, M.; Kurzeja, R.; Duarte, H. F.; Zhang, G.; Durden, D.

2009-12-01

The Savannah River National Laboratory (SRNL), Brookhaven National Laboratory (BNL), the University of Georgia (UGA), and the National Oceanic and Atmospheric Administration (NOAA) conducted a regional tracer experiment to study the nocturnal behavior of CO2 in the vicinity of an instrumented tall tower during two nights on May 11th and 12th, 2009. The experiment consisted of a release of five perfluorocarbon tracer (PFTs) compounds in twelve unique locations in Aiken County, South Carolina. Intensive meteorological measurements including in-situ turbulence were made in conjunction with the release and sampling of the PFTs. A 300m tower was also used to collect data from higher levels, allowing us to determine the extent to which the tracer was mixed vertically. Lagrangian plume simulations performed during the experiment demonstrated transport over distances of >8 km, and correlated well with in situ sampling. The area was characterized by heavy vegetation cover, and carbon dioxide concentrations were also monitored in an effort to determine how respiration and advection affect CO2 levels in the stable layer. Tracer release locations were carefully selected via a fine-scale mesoscale modeling study of similar nights. The purpose of these experiments was to provide data that will be used to increase the understanding of the terrestrial carbon budget, especially with respect to nocturnal boundary layer (NBL) phenomena such as low level jets and breaking gravity waves. Using these data, a simulation of the motion of the tracer within the boundary layer was developed using the Regional Atmospheric Modeling System (RAMS) mesoscale model coupled to a tracer model. The RAMS model was also coupled to the Simple Biosphere (SiB) vegetation model, which allowed for the simulation of the release of carbon dioxide into the NBL. The simulation results are used to validate the NBL hypothesis of CO2 monitoring, by which the release of CO2 can be correlated with the accumulation of CO2 in the boundary layer beneath a stable ‘lid’, which impedes vertical mixing. This is done with both the tracer, in which the release rate is known and no advection occurs, and for CO2, in which the release rate is not known and for which advection of CO2 must be accounted. The high resolution of the simulation allows us to resolve the small-scale motions within the NBL, which are important to nocturnal transport. Flux data from the tall tower were studied to learn more about the eddy transport, and also to detect the occurrence of transport ‘events’ in which the CO2 and H2O values experience a sudden increase. A wavelet analysis is also applied, and reveals the existence of eddy activity dominated by eddies of diameter 90-240m.

Degradation of immobilized azo dyes by Klebsiella sp. UAP-b5 isolated from maize bioadsorbent.

PubMed

Elizalde-González, M P; Fuentes-Ramírez, L E; Guevara-Villa, M R G

2009-01-30

The degradation of two immobilized dyes by Klebsiella sp. UAP-b5 was studied. In batch experiments, the azo dyestuffs Basic Blue 41 and Reactive Black 5 were immobilized onto corn cobs by adsorption, and the adsorption process was characterized by a pseudo-second-order kinetic equation. Klebsiella sp. UAP-b5 was previously isolated from the corn waste and shown to decolorize these dyes in liquid systems. Here, we demonstrate anaerobic decolorization and reductive biodegradation of these dyes by means of spectrophotometry, HPLC, and IR spectroscopy of the solid waste and desorption solutions. We also demonstrate adsorption of compounds that resemble known degradation products.

Cellulose nanocrystal-reinforced keratin bioadsorbent for effective removal of dyes from aqueous solution.

PubMed

Song, Kaili; Xu, Helan; Xu, Lan; Xie, Kongliang; Yang, Yiqi

2017-05-01

High-efficiency and recyclable three-dimensional bioadsorbents were prepared by incorporating cellulose nanocrystal (CNC) as reinforcements in keratin sponge matrix to remove dyes from aqueous solution. Adsorption performance of dyes by CNC-reinforced keratin bioadsorbent was improved significantly as a result of adding CNC as filler. Batch adsorption results showed that the adsorption capacities for Reactive Black 5 and Direct Red 80 by the bioadsorbent were 1201 and 1070mgg -1 , respectively. The isotherms and kinetics for adsorption of both dyes on bioadsorbent followed the Langmuir isotherm model and pseudo-second order model, respectively. Desorption and regeneration experiments showed that the removal efficiencies of the bioadsorbent for both dyes could remain above 80% at the fifth recycling cycles. Moreover, the bioadsorbent possessed excellent packed-bed column operation performance. Those results suggested that the adsorbent could be considered as a high-performance and promising candidate for dye wastewater treatment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Dye removal from textile industrial effluents by adsorption on exfoliated graphite nanoplatelets: kinetic and equilibrium studies.

PubMed

Carvallho, Marilda N; da Silva, Karolyne S; Sales, Deivson C S; Freire, Eleonora M P L; Sobrinho, Maurício A M; Ghislandi, Marcos G

2016-01-01

The concept of physical adsorption was applied for the removal of direct and reactive blue textile dyes from industrial effluents. Commercial graphite nanoplatelets were used as substrate, and the quality of the material was characterized by atomic force and transmission electron microscopies. Dye/graphite nanoplatelets water solutions were prepared varying their pH and initial dye concentration. Exceptionally high values (beyond 100 mg/L) for adsorptive capacity of graphite nanoplatelets could be achieved without complicated chemical modifications, and equilibrium and kinetic experiments were performed. Our findings were compared with the state of the art, and compared with theoretical models. Agreement between them was satisfactory, and allowed us to propose novel considerations describing the interactions of the dyes and the graphene planar structure. The work highlights the important role of these interactions, which can govern the mobility of the dye molecules and the amount of layers that can be stacked on the graphite nanoplatelets surface.

Quantifying solute transport processes: are chemically "conservative" tracers electrically conservative?

USGS Publications Warehouse

Singha, Kamini; Li, Li; Day-Lewis, Frederick D.; Regberg, Aaron B.

2012-01-01

The concept of a nonreactive or conservative tracer, commonly invoked in investigations of solute transport, requires additional study in the context of electrical geophysical monitoring. Tracers that are commonly considered conservative may undergo reactive processes, such as ion exchange, thus changing the aqueous composition of the system. As a result, the measured electrical conductivity may reflect not only solute transport but also reactive processes. We have evaluated the impacts of ion exchange reactions, rate-limited mass transfer, and surface conduction on quantifying tracer mass, mean arrival time, and temporal variance in laboratory-scale column experiments. Numerical examples showed that (1) ion exchange can lead to resistivity-estimated tracer mass, velocity, and dispersivity that may be inaccurate; (2) mass transfer leads to an overestimate in the mobile tracer mass and an underestimate in velocity when using electrical methods; and (3) surface conductance does not notably affect estimated moments when high-concentration tracers are used, although this phenomenon may be important at low concentrations or in sediments with high and/or spatially variable cation-exchange capacity. In all cases, colocated groundwater concentration measurements are of high importance for interpreting geophysical data with respect to the controlling transport processes of interest.

Littoral transport in the surf zone elucidated by an Eulerian sediment tracer.

USGS Publications Warehouse

Duane, D.B.; James, W.R.

1980-01-01

An Eulerian, or time integration, sand tracer experiment was designed and carried out in the surf zone near Pt. Mugu, California on April 19, 1972. Data indicate that conditions of stationarity and finite boundaries required for proper application of Eulerian tracer theory exist for short time periods in the surf zone. Grain counts suggest time required for tracer sand to attain equilibrium concentration is on the order of 30-60 minutes. Grain counts also indicate transport (discharge) was strongly dependent upon grain size, with the maximum rate occurring in the size 2.5-2.75 phi, decreasing to both finer and coarser sizes. The measured instantaneous transport was at the annual rate of 2.4 x 106 m3/yr.- Authors

Preservation of commonly applied fluorescent tracers in complex water samples

NASA Astrophysics Data System (ADS)

Cao, Viet; Schaffer, Mario; Jin, Yulan; Licha, Tobias

2017-06-01

Water sample preservation and pre-treatment are important steps for achieving accurate and reproductive results from tracer tests. However, this is particularly challenging for complex water mixtures prior to fluorescence analysis. In this study, the interference of iron and calcium precipitation with nine commonly applied conservative tracers, uranine, eosin, 1-naphthalene sulfonate, 1,5-naphthalene disulfonate, 2,6-naphthalene disulfonate, 4-amino-1-naphthalene sulfonate, 6-hydroxy-2-naphthalene sulfonate, 1,3,6-naphthalene trisulfonate, and 1,3,6,8-pyrene tetrasulfonate, was investigated in batch experiments. In general, the observed results are influenced by precipitates. A technique consisting of pH adjustment and centrifugation is described for preserving samples and avoiding the impact of these precipitates on the tracer test results.

Effect of gas type on foam film permeability and its implications for foam flow in porous media.

PubMed

Farajzadeh, R; Muruganathan, R M; Rossen, W R; Krastev, R

2011-10-14

The aim of this paper is to provide a perspective on the effect of gas type on the permeability of foam films stabilized by different types of surfactant and to present a critical overview of the tracer gas experiments, which is the common approach to determine the trapped fraction of foam in porous media. In these experiments some part of the gas is replaced by a "tracer gas" during the steady-state stage of the experiments and trapped fraction of foam is determined by fitting the effluent data to a capacitance mass-transfer model. We present the experimental results on the measurement of the gas permeability of foam films stabilized with five surfactants (non-ionic, anionic and cationic) and different salt concentrations. The salt concentrations assure formation of either common black (CBF) or Newton black films (NBF). The experiments are performed with different single gasses. The permeability of the CBF is in general higher than that of the NBF. This behavior is explained by the higher density of the surfactant molecules in the NBF compared to that of CBF. It is also observed that the permeability coefficient, K(cm/s), of CBF and NBF for non-ionic and cationic surfactants are similar and K is insensitive to film thickness. Compared to anionic surfactants, the films made by the non-ionic surfactant have much lower permeability while the films made by the cationic surfactant have larger permeability. This conclusion is valid for all gasses. For all types of surfactant the gas permeability of foam film is largely dependent on the dissolution of gas in the surfactant solution and increases with increasing gas solubility in the bulk liquid. The measured values of K are consistent with rapid diffusion of tracer gasses through trapped gas adjacent to flowing gas in porous media, and difficulties in interpreting the results of tracer-foam experiments with conventional capacitance models. The implications of the results for foam flow in porous media and factors leading to difficulties in the modeling of trapped fraction of foam are discussed in detail. To avoid complications in the interpretation of the results, the best tracer would be one with a permeability close to the permeability of the gas in the foam. This puts a lower limit on the effective diffusion coefficient for tracer in an experiment. Copyright © 2011 Elsevier B.V. All rights reserved.

Tracer particles in two-dimensional elastic networks diffuse logarithmically slow

NASA Astrophysics Data System (ADS)

Lizana, Ludvig; Ambjörnsson, Tobias; Lomholt, Michael A.

2017-01-01

Several experiments on tagged molecules or particles in living systems suggest that they move anomalously slow—their mean squared displacement (MSD) increase slower than linearly with time. Leading models aimed at understanding these experiments predict that the MSD grows as a power law with a growth exponent that is smaller than unity. However, in some experiments the growth is so slow (fitted exponent  ˜0.1-0.2) that they hint towards other mechanisms at play. In this paper, we theoretically demonstrate how in-plane collective modes excited by thermal fluctuations in a two dimensional membrane lead to logarithmic time dependence for the the tracer particle’s MSD.

Batch and fixed-bed adsorption of tartrazine azo-dye onto activated carbon prepared from apricot stones

NASA Astrophysics Data System (ADS)

Albroomi, H. I.; Elsayed, M. A.; Baraka, A.; Abdelmaged, M. A.

2017-07-01

This work describes the potential of utilizing prepared activated carbon from apricot stones as an efficient adsorbent material for tartrazine (TZ) azo-dye removal in a batch and dynamic adsorption system. The results revealed that activated carbons with well-developed surface area (774 m2/g) and pore volume (1.26 cm3/g) can be manufactured from apricot stones by H3PO4 activation. In batch experiments, effects of the parameters such as initial dye concentration and temperature on the removal of the dye were studied. Equilibrium was achieved in 120 min. Adsorption capacity was found to be dependent on the initial concentration of dye solution, and maximum adsorption was found to be 76 mg/g at 100 mg/L of TZ. The adsorption capacity at equilibrium ( q e) increased from 22.6 to 76 mg/g with an increase in the initial dye concentrations from 25 to 100 mg/L. The thermodynamic parameters such as change in free energy (Δ G 0), enthalpy (Δ H 0) and entropy (Δ S 0) were determined and the positive value of (Δ H) 78.1 (K J mol-1) revealed that adsorption efficiency increased with an increase in the process temperature. In fixed-bed column experiments, the effect of selected operating parameters such as bed depth, flow rate and initial dye concentration on the adsorption capacity was evaluated. Increase in bed height of adsorption columns leads to an extension of breakthrough point as well as the exhaustion time of adsorbent. However, the maximum adsorption capacities decrease with increases of flow rate. The breakthrough data fitted well to bed depth service time and Thomas models with high coefficient of determination, R 2 ≥ 94.

Using Chemistry and Color To Analyze Household Products: A 10-12 Hour Laboratory Project at the General Chemistry Level

NASA Astrophysics Data System (ADS)

Bosma, Wayne B.

1998-02-01

A general chemistry experiment is described in which the students use UV/Visible spectrometry as an analytical tool, for both compound identification and pH measurement. In the first portion of the experiment, the students compare spectra to determine which FD and C dyes are contained in household products. They furthermore use chromatography to separate the dyes in grape Kool-Aid, and analyze the products with the spectrometer. In the second portion of the experiment, the students use Beer's Law to determine the pH of solutions containing an acid/base indicator. The experiments are visually stimulating and provide a solid introduction to spectroscopy and perceived color.

Degradation characteristic of monoazo, diazo and anthraquinone dye by UV/H{sub 2}O{sub 2} process

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abidin, Che Zulzikrami Azner, E-mail: zulzikrami@unimap.edu.my, E-mail: drfahmi@unimap.edu.my, E-mail: umifazara@unimap.edu.my, E-mail: fatinnadhirah89@gmail.com; Fahmi, Muhammad Ridwan, E-mail: zulzikrami@unimap.edu.my, E-mail: drfahmi@unimap.edu.my, E-mail: umifazara@unimap.edu.my, E-mail: fatinnadhirah89@gmail.com; Fazara, Md Ali Umi, E-mail: zulzikrami@unimap.edu.my, E-mail: drfahmi@unimap.edu.my, E-mail: umifazara@unimap.edu.my, E-mail: fatinnadhirah89@gmail.com

2014-10-24

In this study, the degradation characteristic of monoazo, diazo and anthraquinone dye by UV/H{sub 2}O{sub 2} process was evaluated based on the trend of color, chemical oxygen demand (COD) and total organic carbon (TOC) removal. Three types of dyes consist of monoazo, diazo and anthraquinone dyes were used to compare the degradation mechanism of the dyes. The UV/H{sub 2}O{sub 2} experiments were conducted in a laboratory scale cylindrical glass reactor operated in semi-batch mode. The UV/Vis characterization of monoazo, diazo and anthraquinone dye indicated that the rapid degradation of the dyes by UV/H{sub 2}O{sub 2} process is meaningful with respectmore » to decolourization, as a result of the azo bonds and substitute antraquinone chromophore degradation. However, this process is not efficient for aromatic amines removal. The monoazo MO was difficult to be decolorized than diazo RR120 dye, which imply that number of sulphonic groups in the dye molecules determines the reactivity with hydroxyl radical. The increased in COD removal is the evidence for oxidation and decreased in carbon content of dye molecules. TOC removal analysis shows that low TOC removal of monoazo MO and diazo RR120, as compared to anthraquinone RB19 may indicate an accumulation of by-products that are resistant to the H{sub 2}O{sub 2} photolysis.« less

Evaluation of respiratory system in textile-dyeing workers.

PubMed

Salmani Nodoushan, Mojahede; Mehrparvar, Amir Houshang; Loukzadeh, Ziba; Rahimian, Masoud; Ghove Nodoushan, Mohamad Ali; Jafari Nodoushan, Reza

2014-01-01

Despite the presence of many textile and dyeing plants in Iran, we couldn't find similar studies in this country. Forthermore, considering progress in the dyeing process and engineering controls, assessment of respiratory system is important for these workers. The present study was performed to evaluate the respiratory system in dyeing workers. In a cross-sectional study, 101 dyeing workers (all dyeing workers in yazd) and 90 workers without respiratory exposures (control group), were evaluated. A questionnaire was filled for each participant included Venables questionnaire and some other questions about age, work experience, personal or familial history of asthma or atopy, acute and chronic respiratory symptoms; Then spirometry was performed before and after the shift work Results: The frequency of acute and chronic respiratory symptoms was significantly higher among dyeing workers than controls. According to the Venables questionnaire, 11.9% of the dyeing workers suffered from asthma. Means of FVC and FEV1 of pre-shift spirometry were lower than control (p< 0.001). Across-shift spirometry showed significant reduction of FVC (p< 0.001), FEV1 (p< 0.001), FEF25-75% (p= 0.05) and FEF25% (p= 0.007) in dyeing workers compared to the control group. Evaluation of dyeing workers' respiratory system in this study showed that despite development in dyeing processes and engineering controls, workers in this job show more prevalent acute and chronic symptoms, and across-shift changes in spirometric parameters were significantly higher in this work group than the control group. Therefore it is necessary to pay attention to the control of respiratory exposures in this job.

Photoactive dye enhanced tissue ablation for endoscopic laser prostatectomy

NASA Astrophysics Data System (ADS)

Ahn, Minwoo; Nguyen, Trung Hau; Nguyen, Van Phuc; Oh, Junghwan; Kang, Hyun Wook

2015-02-01

Laser light has been widely used as a surgical tool to treat benign prostate hyperplasia with high laser power. The purpose of this study was to validate the feasibility of photoactive dye injection to enhance light absorption and eventually to facilitate tissue ablation with low laser power. The experiment was implemented on chicken breast due to minimal optical absorption Amaranth (AR), black dye (BD), hemoglobin powder (HP), and endoscopic marker (EM), were selected and tested in vitro with a customized 532-nm laser system with radiant exposure ranging from 0.9 to 3.9 J/cm2. Light absorbance and ablation threshold were measured with UV-VIS spectrometer and Probit analysis, respectively, and compared to feature the function of the injected dyes. Ablation performance with dye-injection was evaluated in light of radiant exposure, dye concentration, and number of injection. Higher light absorption by injected dyes led to lower ablation threshold as well as more efficient tissue removal in the order of AR, BD, HP, and EM. Regardless of the injected dyes, ablation efficiency principally increased with input parameter. Among the dyes, AR created the highest ablation rate of 44.2+/-0.2 μm/pulse due to higher absorbance and lower ablation threshold. Preliminary tests on canine prostate with a hydraulic injection system demonstrated that 80 W with dye injection yielded comparable ablation efficiency to 120 W with no injection, indicating 33 % reduced laser power with almost equivalent performance. In-depth comprehension on photoactive dye-enhanced tissue ablation can help accomplish efficient and safe laser treatment for BPH with low power application.

Interpretation of Tracer Experiments on Inverted Five-spot Well-patterns within the Western Half of the Farnsworth Unit Oil Field

DOE PAGES

White, Mark D.; Esser, R. P.; McPherson, B. P.; ...

2017-07-01

The Southwest Carbon Partnership (SWP), one of the U.S. Department of Energy (U.S. DOE) seven Regional Carbon Sequestration Partnerships, is currently working to demonstrate the utilization and storage of CO 2 in the Farnsworth Unit (FWU) Enhanced Oil Recovery (EOR) site under the final development phase of this U.S. DOE initiative. A component of the research is to use fluid tracers to understand the multifluid flow patterns that develop between injection and production wells via collected field data and supporting numerical reservoir models. The FWU, located in the Anadarko Basin, Ochiltree County, Texas, and being operated by Chaparral Energy, ismore » a mature EOR water-flood field, which is currently being converted to a CO 2 flow, with inverted 5-spot patterns transitioning from pure water to alternating CO 2 and water floods (i.e., water alternating gas (WAG)) at an approximate rate of one every 6 to 10 months. The SWP tracer program is conducting a suite of tracer injections into the active 5-spot patterns at the FWU. Tracers have been selected to be nonreactive and either principally soluble in CO 2 (gas soluble) or water (aqueous soluble). In addition to characterizing the multifluid flow behaviour within reservoir, the gas and aqueous tracers have roles in detecting any leakage from the reservoir. A total of seven unique perfluorocarbon tracer (PFT) compounds make up the suite of gas soluble tracers and eight unique naphthalene sulfonate tracer (NPT) compounds comprise the aqueous soluble tracers. Lastly, all selected tracers are significantly detectable below the parts per billion concentrations, allowing for high resolution for the inter-well tests at relatively low injection volumes.« less

Interpretation of Tracer Experiments on Inverted Five-spot Well-patterns within the Western Half of the Farnsworth Unit Oil Field

DOE Office of Scientific and Technical Information (OSTI.GOV)

White, Mark D.; Esser, R. P.; McPherson, B. P.

The Southwest Carbon Partnership (SWP), one of the U.S. Department of Energy (U.S. DOE) seven Regional Carbon Sequestration Partnerships, is currently working to demonstrate the utilization and storage of CO 2 in the Farnsworth Unit (FWU) Enhanced Oil Recovery (EOR) site under the final development phase of this U.S. DOE initiative. A component of the research is to use fluid tracers to understand the multifluid flow patterns that develop between injection and production wells via collected field data and supporting numerical reservoir models. The FWU, located in the Anadarko Basin, Ochiltree County, Texas, and being operated by Chaparral Energy, ismore » a mature EOR water-flood field, which is currently being converted to a CO 2 flow, with inverted 5-spot patterns transitioning from pure water to alternating CO 2 and water floods (i.e., water alternating gas (WAG)) at an approximate rate of one every 6 to 10 months. The SWP tracer program is conducting a suite of tracer injections into the active 5-spot patterns at the FWU. Tracers have been selected to be nonreactive and either principally soluble in CO 2 (gas soluble) or water (aqueous soluble). In addition to characterizing the multifluid flow behaviour within reservoir, the gas and aqueous tracers have roles in detecting any leakage from the reservoir. A total of seven unique perfluorocarbon tracer (PFT) compounds make up the suite of gas soluble tracers and eight unique naphthalene sulfonate tracer (NPT) compounds comprise the aqueous soluble tracers. Lastly, all selected tracers are significantly detectable below the parts per billion concentrations, allowing for high resolution for the inter-well tests at relatively low injection volumes.« less

Nanoporous membranes enable concentration and transport in fully wet paper-based assays.

PubMed

Gong, Max M; Zhang, Pei; MacDonald, Brendan D; Sinton, David

2014-08-19

Low-cost paper-based assays are emerging as the platform for diagnostics worldwide. Paper does not, however, readily enable advanced functionality required for complex diagnostics, such as analyte concentration and controlled analyte transport. That is, after the initial wetting, no further analyte manipulation is possible. Here, we demonstrate active concentration and transport of analytes in fully wet paper-based assays by leveraging nanoporous material (mean pore diameter ≈ 4 nm) and ion concentration polarization. Two classes of devices are developed, an external stamp-like device with the nanoporous material separate from the paper-based assay, and an in-paper device patterned with the nanoporous material. Experimental results demonstrate up to 40-fold concentration of a fluorescent tracer in fully wet paper, and directional transport of the tracer over centimeters with efficiencies up to 96%. In-paper devices are applied to concentrate protein and colored dye, extending their limits of detection from ∼10 to ∼2 pmol/mL and from ∼40 to ∼10 μM, respectively. This approach is demonstrated in nitrocellulose membrane as well as paper, and the added cost of the nanoporous material is very low at ∼0.015 USD per device. The result is a major advance in analyte concentration and manipulation for the growing field of low-cost paper-based assays.

Traveltime and reaeration of selected streams in the North Platte and Yampa River basins, Colorado

USGS Publications Warehouse

Ruddy, B.C.; Britton, L.J.

1989-01-01

Traveltime characteristics were measured using rhodamine WT dye as a tracer in the Canadian and Michigan Rivers in the North Platte river basin and in the Yampa, Elk, and Williams Fork Rivers, and Trout and Fish Creeks in the Yampa River basin of Colorado. Reaeration coefficients were determined by use of the modified-tracer techniques using ethylene and propane gas for selected stream reaches during low-flow conditions. Stream reach velocities determined during traveltime and reaeration measurements ranged from 0.09 mi/hour at 5.1 cu ft/sec on the Canadian River to 4.04 mi/hour at 746 cu ft/sec on the Williams Fork. A modified longitudinal dispersion model or results from cumulative traveltime curves were used to estimate traveltimes in the measured streams for streamflow conditions other than those measured. Traveltime-discharge curves were developed by using the estimated and measured traveltimes. Reaeration coefficients were determined for 20 different subreaches in the study area. Rearation coefficients were determined for 20 different subreaches in the study area. Reaeration coefficients ranged from 1.6/day in a pooled subreach of the Yampa River Craig, Colorado, to 98/day in a turbulent subreach of Trout Creek near Oak Creek, Colorado. (USGS)

Fractured-rock hydrogeophysics with electrically conductive and neutrally buoyant tracers

NASA Astrophysics Data System (ADS)

Shakas, A.; Linde, N.; Baron, L.; Le Borgne, T.; Bour, O.; Lavenant, N.; Gerard, M. F.

2016-12-01

Artificial tracer tests help to characterize and understand the dynamics of groundwater systems. This remains a challenging task, especially when dealing with highly heterogeneous formations in which flow can be very localized and the interpretation of tracer breakthrough curves may be ambiguous. As a complement to tracer tests, ground-penetrating radar (GPR) and electrical resistivity tomography can map the space-time migration of electrically conductive tracers. In hydrogeophysics, the most common tracer is dissolved table salt in water. However, conventional salt tracers lead to density effects that are often ignored. Even less than 1% density variations can have a dramatic effect on transport behavior and affect tracer tests in complex ways. Such effects have been demonstrated in our previous experiments that used single-hole GPR to monitor saline push-pull tests in fractured granite. It is possible to model density effects, but this leads to computational complexity and field dynamics that are not necessarily representative of the natural responses of the system. To minimize density effects, we performed a new set of push-pull tests using a neutrally buoyant and electrically conductive tracer at the same test site located close to Ploemeur, France. This novel tracer consists of a mixture of salt (NaCl), water and pure ethanol. Ethanol has a density of 789 g/L at 20° C and is used to counter-act the salt-induced density increase. Our GPR time-lapse images and tracer breakthrough data indicate a largely reversible transport process that confirms the neutral buoyancy of the tracer. Ethanol is biodegradable and does not pose significant environmental issues. Furthermore, calibration of the neutral-buoyant mixture is straightforward to perform in the field using Archimedes principle. Based on these results, we argue that neutrally buoyant ethanol-salt-water mixtures are ideal for a wide variety of hydrogeophysical tracer tests in porous or fractured media.

An assessment of the tracer-based approach to quantifying groundwater contributions to streamflow

NASA Astrophysics Data System (ADS)

Jones, J. P.; Sudicky, E. A.; Brookfield, A. E.; Park, Y.-J.

2006-02-01

The use of conservative geochemical and isotopic tracers along with mass balance equations to determine the pre-event groundwater contributions to streamflow during a rainfall event is widely used for hydrograph separation; however, aspects related to the influence of surface and subsurface mixing processes on the estimates of the pre-event contribution remain poorly understood. Moreover, the lack of a precise definition of "pre-event" versus "event" contributions on the one hand and "old" versus "new" water components on the other hand has seemingly led to confusion within the hydrologic community about the role of Darcian-based groundwater flow during a storm event. In this work, a fully integrated surface and subsurface flow and solute transport model is used to analyze flow system dynamics during a storm event, concomitantly with advective-dispersive tracer transport, and to investigate the role of hydrodynamic mixing processes on the estimates of the pre-event component. A number of numerical experiments are presented, including an analysis of a controlled rainfall-runoff experiment, that compare the computed Darcian-based groundwater fluxes contributing to streamflow during a rainfall event with estimates of these contributions based on a tracer-based separation. It is shown that hydrodynamic mixing processes can dramatically influence estimates of the pre-event water contribution estimated by a tracer-based separation. Specifically, it is demonstrated that the actual amount of bulk flowing groundwater contributing to streamflow may be much smaller than the quantity indirectly estimated from a separation based on tracer mass balances, even if the mixing processes are weak.

Assessment of key transport parameters in a karst system under different dynamic conditions based on tracer experiments: the Jeita karst system, Lebanon

NASA Astrophysics Data System (ADS)

Doummar, Joanna; Margane, Armin; Geyer, Tobias; Sauter, Martin

2018-03-01

Artificial tracer experiments were conducted in the mature karst system of Jeita (Lebanon) under various flow conditions using surface and subsurface tracer injection points, to determine the variation of transport parameters (attenuation of peak concentration, velocity, transit times, dispersivity, and proportion of immobile and mobile regions) along fast and slow flow pathways. Tracer breakthrough curves (TBCs) observed at the karst spring were interpreted using a two-region nonequilibrium approach (2RNEM) to account for the skewness in the TBCs' long tailings. The conduit test results revealed a discharge threshold in the system dynamics, beyond which the transport parameters vary significantly. The polynomial relationship between transport velocity and discharge can be related to the variation of the conduit's cross-sectional area. Longitudinal dispersivity in the conduit system is not a constant value (α = 7-10 m) and decreases linearly with increasing flow rate because of dilution effects. Additionally, the proportion of immobile regions (arising from conduit irregularities) increases with decreasing water level in the conduit system. From tracer tests with injection at the surface, longitudinal dispersivity values are found to be large (8-27 m). The tailing observed in some TBCs is generated in the unsaturated zone before the tracer actually arrives at the major subsurface conduit draining the system. This work allows the estimation and prediction of the key transport parameters in karst aquifers. It shows that these parameters vary with time and flow dynamics, and they reflect the geometry of the flow pathway and the origin of infiltrating (potentially contaminated) recharge.

Virus fate and transport during recharge using recycled water at a research field site in the Montebello Forebay, Los Angeles County, California, 1997-2000

USGS Publications Warehouse

Anders, Robert; Yanko, William A.; Schroeder, Roy A.; Jackson, James L.

2004-01-01

Total and fecal coliform bacteria distributions in subsurface water samples collected at a research field site in Los Angeles County were found to increase from nondetectable levels immediately before artificial recharge using tertiary-treated municipal wastewater (recycled water). This rapid increase indicates that bacteria can move through the soil with the percolating recycled water over intervals of a few days and vertical and horizontal distances of about 3 meters. This conclusion formed the basis for three field-scale experiments using bacterial viruses (bacteriophage) MS2 and PRD1 as surrogates for human enteric viruses and bromide as a conservative tracer to determine the fate and transport of viruses in recycled water during subsurface transport under actual recharge conditions. The research field site consists of a test basin constructed adjacent to a large recharge facility (spreading grounds) located in the Montebello Forebay of Los Angeles County, California. The soil beneath the test basin is predominantly medium to coarse, moderately sorted, grayish-brown sand. The three tracer experiments were conducted during August 1997, August-September 1998, and August 2000. For each experiment, prepared solutions of bacteriophage and bromide were sprayed on the surface of the water in the test basin and injected, using peristaltic pumps, directly into the feed pipe delivering the recycled water to the test basin. Extensive data were obtained for water samples collected from the test basin itself and from depths of 0.3, 0.6, 1.0, 1.5, 3.0, and 7.6 meters below the bottom of the test basin. The rate of bacteriophage inactivation in the recycled water, independent of any processes occurring in the subsurface, was determined from measurements on water samples from the test basin. Regression analysis of the ratios of bacteriophage to bromide was used to determine the attenuation rates for MS2 and PRD1, defined as the logarithmic reduction in the ratio during each experiment. Although the inactivation rates increased during the third tracer experiment, they were nearly two orders of magnitude less than the attenuation rates. Therefore, adsorption, not inactivation, is the predominant removal mechanism for viruses during artificial recharge. Using the colloid-filtration model, the collision efficiency was determined for both bacteriophage during the second and third field-scale tracer experiments. The collision efficiency confirms that more favorable attachment conditions existed for PRD1, especially during the third tracer experiment. The different collision efficiencies between the second and third tracer experiments possibly were due to changing hydraulic conditions at the research field site during each experiment. The field data suggest that an optimal management scenario might exist to maximize the amount of recycled water that can be applied to the spreading grounds while still maintaining favorable attachment conditions for virus removal and thereby ensuring protection of the ground-water supply.

Hybrid Core-Shell (HyCoS) Nanoparticles produced by Complex Coacervation for Multimodal Applications

NASA Astrophysics Data System (ADS)

Vecchione, D.; Grimaldi, A. M.; Forte, E.; Bevilacqua, Paolo; Netti, P. A.; Torino, E.

2017-03-01

Multimodal imaging probes can provide diagnostic information combining different imaging modalities. Nanoparticles (NPs) can contain two or more imaging tracers that allow several diagnostic techniques to be used simultaneously. In this work, a complex coacervation process to produce core-shell completely biocompatible polymeric nanoparticles (HyCoS) for multimodal imaging applications is described. Innovations on the traditional coacervation process are found in the control of the reaction temperature, allowing a speeding up of the reaction itself, and the production of a double-crosslinked system to improve the stability of the nanostructures in the presence of a clinically relevant contrast agent for MRI (Gd-DTPA). Through the control of the crosslinking behavior, an increase up to 6 times of the relaxometric properties of the Gd-DTPA is achieved. Furthermore, HyCoS can be loaded with a high amount of dye such as ATTO 633 or conjugated with a model dye such as FITC for in vivo optical imaging. The results show stable core-shell polymeric nanoparticles that can be used both for MRI and for optical applications allowing detection free from harmful radiation. Additionally, preliminary results about the possibility to trigger the release of a drug through a pH effect are reported.

Decolorization of different textile dyes by Penicillium simplicissimum and toxicity evaluation after fungal treatment

PubMed Central

Bergsten-Torralba, L.R.; Nishikawa, M.M.; Baptista, D.F.; Magalhães, D.P.; da Silva, M.

2009-01-01

The objective of this study was to investigate the capacity of decolorization and detoxification of the textile dyes Reactive Red 198 (RR198), Reactive Blue 214 (RB214), Reactive Blue 21 (RB21) and the mixture of the three dyes (MXD) by Penicillium simplicissimum INCQS 40211. The dye RB21, a phthalocyanine, was totally decolorized in 2 days, and the others, the monoazo RR198, the diazo RB214 and MXD were decolorized after 7 days by P. simplicissimum. Initially the dye decolorization involved dye adsorption by the biomass followed by degradation. The acute toxicity after fungal treatment was monitored with the microcrustacean Daphnia pulex and measured through Effective Concentration 50% (EC50). P. simplicissimum reduced efficiently the toxicity of RB21 from moderately acutely toxic to minor acutely toxic and it also reduced the toxicity of RB214 and MXD, which remained minor acutely toxic. Nevertheless, the fungus increased the toxicity of RR198 despite of the reduction of MXD toxicity, which included this dye. Thus, P. simplicissimum INCQS 40211 was efficient to decolorize different textile dyes and the mixture of them with a significant reduction of their toxicity. In addition this investigation also demonstrated the need of toxicological assays associated to decolorization experiments. PMID:24031428

Solar/UV-induced photocatalytic degradation of three commercial textile dyes.

PubMed

Neppolian, B; Choi, H C; Sakthivel, S; Arabindoo, Banumathi; Murugesan, V

2002-01-28

The photocatalytic degradation of three commercial textile dyes with different structure has been investigated using TiO(2) (Degussa P25) photocatalyst in aqueous solution under solar irradiation. Experiments were conducted to optimise various parameters viz. amount of catalyst, concentration of dye, pH and solar light intensity. Degradation of all the dyes were examined by using chemical oxygen demand (COD) method. The degradation efficiency of the three dyes is as follows: Reactive Yellow 17(RY17) > Reactive Red 2(RR2) > Reactive Blue 4 (RB4), respectively. The experimental results indicate that TiO(2) (Degussa P25) is the best catalyst in comparison with other commercial photocatalysts such as, TiO(2) (Merck), ZnO, ZrO(2), WO(3) and CdS. Though the UV irradiation can efficiently degrade the dyes, naturally abundant solar irradiation is also very effective in the mineralisation of dyes. The comparison between thin-film coating and aqueous slurry method reveals that slurry method is more efficient than coating but the problems of leaching and the requirement of separation can be avoided by using coating technique. These observations indicate that all the three dyes could be degraded completely at different time intervals. Hence, it may be a viable technique for the safe disposal of textile wastewater into the water streams.

Cy3 and Cy5 dyes attached to oligonucleotide terminus stabilize DNA duplexes: predictive thermodynamic model.

PubMed

Moreira, Bernardo G; You, Yong; Owczarzy, Richard

2015-03-01

Cyanine dyes are important chemical modifications of oligonucleotides exhibiting intensive and stable fluorescence at visible light wavelengths. When Cy3 or Cy5 dye is attached to 5' end of a DNA duplex, the dye stacks on the terminal base pair and stabilizes the duplex. Using optical melting experiments, we have determined thermodynamic parameters that can predict the effects of the dyes on duplex stability quantitatively (ΔG°, Tm). Both Cy dyes enhance duplex formation by 1.2 kcal/mol on average, however, this Gibbs energy contribution is sequence-dependent. If the Cy5 is attached to a pyrimidine nucleotide of pyrimidine-purine base pair, the stabilization is larger compared to the attachment to a purine nucleotide. This is likely due to increased stacking interactions of the dye to the purine of the complementary strand. Dangling (unpaired) nucleotides at duplex terminus are also known to enhance duplex stability. Stabilization originated from the Cy dyes is significantly larger than the stabilization due to the presence of dangling nucleotides. If both the dangling base and Cy3 are present, their thermodynamic contributions are approximately additive. New thermodynamic parameters improve predictions of duplex folding, which will help design oligonucleotide sequences for biophysical, biological, engineering, and nanotechnology applications. Copyright © 2015. Published by Elsevier B.V.

A Simple Inexpensive Procedure for Illustrating Some Principles of Tomography

ERIC Educational Resources Information Center

Darvey, Ivan G.

2013-01-01

The experiment proposed here illustrates some concepts of tomography via a qualitative determination of the relative concentration of various dilutions of food dye without "a priori" knowledge of the concentration of each dye mixture. This is performed in a manner analogous to computed tomography (CT) scans. In order to determine the…

Feasibility of surveying pesticide coverage with airborne fluorometer

NASA Technical Reports Server (NTRS)

Stoertz, G. E.; Hemphill, W. R.

1970-01-01

Response of a Fraunhofer line discriminator (FLD) to varying distributions of granulated corncobs stained with varying concentrations of Rhodamine WT dye was tested on the ground and from an H-19 helicopter. The granules are used as a vehicle for airborne emplacement of poison to control fire ants in the eastern and southeastern United States. Test results showed that the granules are detectable by FLD but that the concentration must be too great to be practical with the present apparatus. Possible methods for enhancement of response may include: (1) increasing dye concentration; (2) incorporating with the poisoned granules a second material to carry the dye alone; (3) use of a more strongly fluorescent substance (at 5890 A); (4) modifying the time interval after dyeing, or modifying the method of dyeing; (5) modifying the FLD for greater efficiency, increased field of view or larger optics; or (6) experimenting with laser-stimulated fluorescence.

Automated extraction of direct, reactive, and vat dyes from cellulosic fibers for forensic analysis by capillary electrophoresis.

PubMed

Dockery, C R; Stefan, A R; Nieuwland, A A; Roberson, S N; Baguley, B M; Hendrix, J E; Morgan, S L

2009-08-01

Systematic designed experiments were employed to find the optimum conditions for extraction of direct, reactive, and vat dyes from cotton fibers prior to forensic characterization. Automated microextractions were coupled with measurements of extraction efficiencies on a microplate reader UV-visible spectrophotometer to enable rapid screening of extraction efficiency as a function of solvent composition. Solvent extraction conditions were also developed to be compatible with subsequent forensic characterization of extracted dyes by capillary electrophoresis with UV-visible diode array detection. The capillary electrophoresis electrolyte successfully used in this work consists of 5 mM ammonium acetate in 40:60 acetonitrile-water at pH 9.3, with the addition of sodium dithionite reducing agent to facilitate analysis of vat dyes. The ultimate goal of these research efforts is enhanced discrimination of trace fiber evidence by analysis of extracted dyes.

Simplifying Logistics and Avoiding the Unnecessary in Patients With Breast Cancer Undergoing Sentinel Node Biopsy. A Prospective Feasibility Trial of the Preoperative Injection of Super Paramagnetic Iron Oxide Nanoparticles.

PubMed

Karakatsanis, A; Olofsson, H; Stålberg, P; Bergkvist, L; Abdsaleh, S; Wärnberg, F

2018-06-01

Sentinel node is routinely localized with the intraoperative use of a radioactive tracer, involving challenging logistics. Super paramagnetic iron oxide nanoparticle is a non-radioactive tracer with comparable performance that could allow for preoperative localization, would simplify the procedure, and possibly be of value in axillary mapping before neoadjuvant treatment. The current trial aimed to determine the a priori hypothesis that the injection of super paramagnetic iron oxide nanoparticles in the preoperative period for the localization of the sentinel node is feasible. This is a prospective feasibility trial, conducted from 9 September 2014 to 22 October 2014 at Uppsala University Hospital. In all, 12 consecutive patients with primary breast cancer planned for resection of the primary and sentinel node biopsy were recruited. Super paramagnetic iron oxide nanoparticles were injected in the preoperative visit in the outpatient clinic. The radioactive tracer ( 99 mTc) and the blue dye were injected perioperatively in standard fashion. A volunteer was injected with super paramagnetic iron oxide nanoparticles to follow the decline in the magnetic signal in the sentinel node over time. The primary outcome was successful sentinel node detection. Super paramagnetic iron oxide nanoparticles' detection after preoperative injection (3-15 days) was successful in all cases (100%). In the volunteer, axillary signal was presented for 4 weeks. No adverse effects were noted. Conclusion and relevance: Preoperative super paramagnetic iron oxide nanoparticles' injection is feasible and leads to successful detection of the sentinel node. That may lead to simplified logistics as well as the identification, sampling, and marking of the sentinel node in patients planned for neoadjuvant treatment.

Multi-scale controls on spatial variability in river biogeochemical cycling

NASA Astrophysics Data System (ADS)

Blaen, Phillip; Kurz, Marie; Knapp, Julia; Mendoza-Lera, Clara; Lee-Cullin, Joe; Klaar, Megan; Drummond, Jennifer; Jaeger, Anna; Zarnetske, Jay; Lewandowski, Joerg; Marti, Eugenia; Ward, Adam; Fleckenstein, Jan; Datry, Thibault; Larned, Scott; Krause, Stefan

2016-04-01

Excessive nutrient concentrations are common in surface waters and groundwaters in agricultural catchments worldwide. Increasing geomorphological heterogeneity in river channels may help to attenuate nutrient pollution by facilitating water exchange fluxes with the hyporheic zone; a site of intense microbial activity where biogeochemical cycling rates can be high. However, the controls on spatial variability in biogeochemical cycling, particularly at scales relevant for river managers, are largely unknown. Here, we aimed to assess: 1) how differences in river geomorphological heterogeneity control solute transport and rates of biogeochemical cycling at sub-reach scales (102 m); and 2) the relative magnitude of these differences versus those relating to reach scale substrate variability (103 m). We used the reactive tracer resazurin (Raz), a weakly fluorescent dye that transforms to highly fluorescent resorufin (Rru) under mildly reducing conditions, as a proxy to assess rates of biogeochemical cycling in a lowland river in southern England. Solute tracer tests were conducted in two reaches with contrasting substrates: one sand-dominated and the other gravel-dominated. Each reach was divided into sub-reaches that varied in geomorphic complexity (e.g. by the presence of pool-riffle sequences or the abundance of large woody debris). Slug injections of Raz and the conservative tracer fluorescein were conducted in each reach during baseflow conditions (Q ≈ 80 L/s) and breakthrough curves monitored using in-situ fluorometers. Preliminary results indicate overall Raz:Rru transformation rates in the gravel-dominated reach were more than 50% higher than those in the sand-dominated reach. However, high sub-reach variability in Raz:Rru transformation rates and conservative solute transport parameters suggests small scale targeted management interventions to alter geomorphic heterogeneity may be effective in creating hotspots of river biogeochemical cycling and nutrient load attenuation.

Clinical trial of combined radio- and fluorescence-guided sentinel lymph node biopsy in breast cancer

PubMed Central

Schaafsma, Boudewijn E.; Verbeek, Floris P.R.; Rietbergen, Daphne D.D.; van der Hiel, Bernies; van der Vorst, Joost R.; Liefers, Gerrit-Jan; Frangioni, John V.; van de Velde, Cornelis J.H.; van Leeuwen, Fijs W.B.; Vahrmeijer, Alexander L.

2013-01-01

Background Combining radioactive colloids and a near-infrared (NIR) fluorophore permit preoperative planning and intraoperative localization of deeply located sentinel lymph nodes (SLNs) with direct optical guidance by a single lymphatic tracer. The aim of this clinical trial was to evaluate and optimize a hybrid NIR fluorescence and radioactive tracer for SLN detection in breast cancer patients. Method Patients with breast cancer undergoing SLN biopsy were enrolled. The day before surgery, indocyanine green (ICG)-99mTc-Nanocolloid was injected periareolarly and a lymphoscintigram was acquired. Directly before surgery, blue dye was injected. Intraoperative SLN localization was performed by a gamma probe and the Mini-FLARETM NIR fluorescence imaging system. Patients were divided into two dose groups, with one group receiving twice the particle density of ICG and nanocolloid, but the same dose of radioactive 99mTechnetium. Results Thirty-two patients were enrolled in the trial. At least one SLN was identified pre- and intraoperatively. All 48 axillary SLNs could be detected by gamma tracing and NIR fluorescence imaging, but only 42 of them stained blue. NIR fluorescence permitted detection of lymphatic vessels draining to the SLN up to 29 hours after injection. Increasing the particle density by two-fold did not yield a difference in fluorescence intensity, median 255 (range 98 – 542) vs. median 284 (90 – 921; P = 0.590), or signal- to- background ratio, median 5.4 (range 3.0 – 15.4) vs. median 4.9 (3.5 – 16.3; P = 1.000), of the SLN. Conclusion The hybrid NIR fluorescence and radioactive tracer ICG-99mTc-Nanocolloid permitted accurate pre- and intraoperative detection of the SLNs in patients with breast cancer. PMID:23696463

Tumor Endothelial Marker Imaging in Melanomas Using Dual-Tracer Fluorescence Molecular Imaging

PubMed Central

Tichauer, Kenneth M.; Deharvengt, Sophie J.; Samkoe, Kimberley S.; Gunn, Jason R.; Bosenberg, Marcus W.; Turk, Mary-Jo; Hasan, Tayyaba; Stan, Radu V.; Pogue, Brian W.

2014-01-01

Purpose Cancer-specific endothelial markers available for intravascular binding are promising targets for new molecular therapies. In this study, a molecular imaging approach of quantifying endothelial marker concentrations (EMCI) is developed and tested in highly light-absorbing melanomas. The approach involves injection of targeted imaging tracer in conjunction with an untargeted tracer, which is used to account for nonspecific uptake and tissue optical property effects on measured targeted tracer concentrations. Procedures Theoretical simulations and a mouse melanoma model experiment were used to test out the EMCI approach. The tracers used in the melanoma experiments were fluorescently labeled anti-Plvap/PV1 antibody (plasmalemma vesicle associated protein Plvap/PV1 is a transmembrane protein marker exposed on the luminal surface of endothelial cells in tumor vasculature) and a fluorescent isotype control antibody, the uptakes of which were measured on a planar fluorescence imaging system. Results The EMCI model was found to be robust to experimental noise under reversible and irreversible binding conditions and was capable of predicting expected overexpression of PV1 in melanomas compared to healthy skin despite a 5-time higher measured fluorescence in healthy skin compared to melanoma: attributable to substantial light attenuation from melanin in the tumors. Conclusions This study demonstrates the potential of EMCI to quantify endothelial marker concentrations in vivo, an accomplishment that is currently unavailable through any other methods, either in vivo or ex vivo. PMID:24217944

CityFlux perfluorocarbon tracer experiments

NASA Astrophysics Data System (ADS)

Petersson, F. K.; Martin, D.; White, I. R.; Henshaw, S. J.; Nickless, G.; Longley, I.; Percival, C. J.; Gallagher, M.; Shallcross, D. E.

2010-01-01

In June 2006, two perfluorocarbon tracer experiments were conducted in central Manchester UK as part of the CityFlux campaign. The main aim was to investigate vertical dispersion in an urban area during convective conditions, but dispersion mechanisms within the street network were also studied. Paired receptors were used in most cases where one receptor was located at ground level and one at roof level. One receptor was located on the roof of Portland Tower which is an 80 m high building in central Manchester. Source receptor distances in the two experiments varied between 120 and 600 m. The results reveal that maximum concentration was sometimes found at roof level rather than at ground level implying the effectiveness of convective forces on dispersion. The degree of vertical dispersion was found to be dependent on source receptor distance as well as on building height in proximity to the release site. Evidence of flow channelling in a street canyon was also found. Both a Gaussian profile and a street network model were applied and the results show that the urban topography may lead to highly effective flow channelling which therefore may be a very important dispersion mechanism should the right meteorological conditions prevail. The experimental results from this campaign have also been compared with a simple urban dispersion model that was developed during the DAPPLE framework and show good agreement with this. The results presented here are some of the first published regarding vertical dispersion. More tracer experiments are needed in order to further characterise vertical concentration profiles and their dependence on, for instance, atmospheric stability. The impact of urban topography on pollutant dispersion is important to focus on in future tracer experiments in order to improve performance of models as well as for our understanding of the relationship between air quality and public health.

CityFlux perfluorocarbon tracer experiments

NASA Astrophysics Data System (ADS)

Petersson, F. K.; Martin, D.; White, I. R.; Henshaw, S. J.; Nickless, G.; Longley, I.; Percival, C. J.; Gallagher, M.; Shallcross, D. E.

2010-07-01

In June 2006, two perfluorocarbon tracer experiments were conducted in central Manchester UK as part of the CityFlux campaign. The main aim was to investigate vertical dispersion in an urban area during convective conditions, but dispersion mechanisms within the street network were also studied. Paired receptors were used in most cases where one receptor was located at ground level and one at roof level. One receptor was located on the roof of Portland Tower which is an 80 m high building in central Manchester. Source receptor distances in the two experiments varied between 120 and 600 m. The results reveal that maximum concentration was sometimes found at roof level rather than at ground level implying the effectiveness of convective forces on dispersion. The degree of vertical dispersion was found to be dependent on source receptor distance as well as on building height in proximity to the release site. Evidence of flow channelling in a street canyon was also found. Both a Gaussian profile and a street network model were applied and the results show that the urban topography may lead to highly effective flow channelling which therefore may be a very important dispersion mechanism should the right meteorological conditions prevail. The experimental results from this campaign have also been compared with a simple urban dispersion model that was developed during the DAPPLE framework and show good agreement with this. The results presented here are some of the first published regarding vertical dispersion. More tracer experiments are needed in order to further characterise vertical concentration profiles and their dependence on, for instance, atmospheric stability. The impact of urban topography on pollutant dispersion is important to focus on in future tracer experiments in order to improve performance of models as well as for our understanding of the relationship between air quality and public health.

Using Multiple Watershed-scale Dye Tracing Tests to Study Water and Solute Transport in Naturally Obstructed Stream Channels

NASA Astrophysics Data System (ADS)

Jin, L.; Meeks, J. L.; Hubbard, K. A.; Kurian, L. M.; Siegel, D. I.; Lautz, L. K.; Otz, M. H.

2007-12-01

Temporary storage of surface water at channel sides and pools significantly affects water and solute transport downstream in watersheds. Beavers, natural "stream channel engineers", build dams which obstruct stream flow and temporarily store water in small to large ponds within stream channels. These ponds substantially delay water movement and increase the water residence time in the system. To study how water and solutes move through these obstructed stream channels, we did multiple dye tracing tests at Cherry Creek, a main tributary to Red Canyon Creek (Wind River Range, Wyoming). First we surveyed beaver dam distributions in detail within the study reaches. We then introduced dyes four times from July 2nd to 6th, 2007 using a scale-up approach. The observation site was fixed at the mouth of Cherry Creek, and 1.5 grams of Rhodamine WT (RWT) dye was injected sequentially at upstream sites with increasing test reach length. The reach lengths scaled up from 500m to 2.5 km. A field fluorometer recorded RWT concentrations every 15 seconds. The results show non-linear decreases of the peak concentration of the dye tracing cloud as the reach scaled up. Also, the times to 1.) the arrivals of the leading edges (Tl), 2.) the peak concentrations (Tp) and 3.) the tailing edges (Tt) and 4) the durations of the tracer cloud (Td) behaved non-linearly as function of length scale. For example, plots of arrivals of leading edges and tailing edges with scale distance appear to define curves of the form; Tl=27.665e1.07× Distance (r2=0.99) and Tt=162.62e0.8551× Distance (r2=0.99), respectively. The greatest non-linearity occurred for the time of tailing and the least for the time of leading edge. These observations are consistent with what would be expected with greater density of dams and/or storage volumes as the reach length increased upgradient. To come to a first approximation, we are currently modeling the breakthrough curves with the solute transport code OTIS to address the relative differences in average travel velocity, longitudinal dispersion, and storage parameters from the mouth to the headwaters of the creek.

Photoacoustic infrared spectroscopy for conducting gas tracer tests and measuring water saturations in landfills.

PubMed

Jung, Yoojin; Han, Byunghyun; Mostafid, M Erfan; Chiu, Pei; Yazdani, Ramin; Imhoff, Paul T

2012-02-01

Gas tracer tests can be used to determine gas flow patterns within landfills, quantify volatile contaminant residence time, and measure water within refuse. While gas chromatography (GC) has been traditionally used to analyze gas tracers in refuse, photoacoustic spectroscopy (PAS) might allow real-time measurements with reduced personnel costs and greater mobility and ease of use. Laboratory and field experiments were conducted to evaluate the efficacy of PAS for conducting gas tracer tests in landfills. Two tracer gases, difluoromethane (DFM) and sulfur hexafluoride (SF(6)), were measured with a commercial PAS instrument. Relative measurement errors were invariant with tracer concentration but influenced by background gas: errors were 1-3% in landfill gas but 4-5% in air. Two partitioning gas tracer tests were conducted in an aerobic landfill, and limits of detection (LODs) were 3-4 times larger for DFM with PAS versus GC due to temporal changes in background signals. While higher LODs can be compensated by injecting larger tracer mass, changes in background signals increased the uncertainty in measured water saturations by up to 25% over comparable GC methods. PAS has distinct advantages over GC with respect to personnel costs and ease of use, although for field applications GC analyses of select samples are recommended to quantify instrument interferences. Copyright © 2011 Elsevier Ltd. All rights reserved.

3D Electrical resistivity tomography monitoring of an artificial tracer injected within the hyporheic zone

NASA Astrophysics Data System (ADS)

Houzé, Clémence; Pessel, Marc; Durand, Veronique

2016-04-01

Due to the high complexity level of hyporheic flow paths, hydrological and biogeochemical processes which occur in this mixing place are not fully understood yet. Some previous studies made in flumes show that hyporheic flow is strongly connected to the streambed morphology and sediment heterogeneity . There is still a lack of practical field experiment considering a natural environment and representation of natural streambed heterogeneities will be always limited in laboratories. The purpose of this project is to propose an innovative method using 3D Electrical Resistivity Tomography (ERT) monitoring of an artificial tracer injection directly within the streambed sediments in order to visualize the water pathways within the hyporheic zone. Field experiment on a small stream was conducted using a plastic tube as an injection piezometer and home-made electrodes strips arranged in a rectangular form made of 180 electrodes (15 strips of 12 electrodes each). The injection of tracer (NaCl) lasted approximatively 90 minutes, and 24h monitoring with increasing step times was performed. The physical properties of the water are controlled by CTD probes installed upstream and downstream within the river. Inverse time-lapse tomographs show development and persistence of a conductive water plume around the injection point. Due to the low hydraulic conductivity of streambed sediments (clay and overlying loess), the tracer movement is barely visible, as it dilutes gradually in the pore water. Impact of boundary conditions on inversion results can lead to significant differences on images, especially in the shallow part of the profiles. Preferential paths of transport are not highlighted here, but this experiment allows to follow spatially and temporarily the evolution of the tracer in a complex natural environment .

A direct passive method for measuring water and contaminant fluxes in porous media

NASA Astrophysics Data System (ADS)

Hatfield, Kirk; Annable, Michael; Cho, Jaehyun; Rao, P. S. C.; Klammler, Harald

2004-12-01

This paper introduces a new direct method for measuring water and contaminant fluxes in porous media. The method uses a passive flux meter (PFM), which is essentially a self-contained permeable unit properly sized to fit tightly in a screened well or boring. The meter is designed to accommodate a mixed medium of hydrophobic and/or hydrophilic permeable sorbents, which retain dissolved organic/inorganic contaminants present in the groundwater flowing passively through the meter. The contaminant mass intercepted and retained on the sorbent is used to quantify cumulative contaminant mass flux. The sorptive matrix is also impregnated with known amounts of one or more water soluble 'resident tracers'. These tracers are displaced from the sorbent at rates proportional to the groundwater flux; hence, in the current meter design, the resident tracers are used to quantify cumulative groundwater flux. Theory is presented and quantitative tools are developed to interpret the water flux from tracers possessing linear and nonlinear elution profiles. The same theory is extended to derive functional relationships useful for quantifying cumulative contaminant mass flux. To validate theory and demonstrate the passive flux meter, results of multiple box-aquifer experiments are presented and discussed. From these experiments, it is seen that accurate water flux measurements are obtained when the tracer used in calculations resides in the meter at levels representing 20 to 70 percent of the initial condition. 2,4-Dimethyl-3-pentanol (DMP) is used as a surrogate groundwater contaminant in the box aquifer experiments. Cumulative DMP fluxes are measured within 5% of known fluxes. The accuracy of these estimates generally increases with the total volume of water intercepted.

Biphasic association of T7 RNA polymerase and a nucleotide analogue, cibacron blue as a model to understand the role of initiating nucleotide in the mechanism of enzyme action.

PubMed

Pai, Sudipta; Das, Mili; Banerjee, Rahul; Dasgupta, Dipak

2011-08-01

T7 RNA polymerase (T7 RNAP) is an enzyme that utilizes ribonucleotides to synthesize the nascent RNA chain in a template-dependent manner. Here we have studied the interaction of T7 RNAP with cibacron blue, an anthraquinone monochlorotriazine dye, its effect on the function of the enzyme and the probable mode of binding of the dye. We have used difference absorption spectroscopy and isothermal titration calorimetry to show that the dye binds T7 RNAP in a biphasic manner. The first phase of the binding is characterized by inactivation of the enzyme. The second binding site overlaps with the common substrate-binding site of the enzyme. We have carried out docking experiment to map the binding site of the dye in the promoter bound protein. Competitive displacement of the dye from the high affinity site by labeled GTP and isothermal titration calorimetry of high affinity GTP bound enzyme with the dye suggests a strong correlation between the high affinity dye binding and the high affinity GTP binding in T7 RNAP reported earlier from our laboratory.

Appraisal of marigold flower based lutein as natural colourant for textile dyeing under the influence of gamma radiations

NASA Astrophysics Data System (ADS)

Adeel, Shahid; Gulzar, Tahsin; Azeem, Muhammad; Fazal-ur-Rehman; Saeed, Muhammad; Hanif, Iram; Iqbal, Naeem

2017-01-01

Maintaining colour strength and fastness of the fabrics dyed with natural colourants had been the major constraint of utilizing plant based dyes in modern textile practices. The present study was concerned with the extraction of lutein dye from marigold (Tagetes erecta L.) flowers and role of gamma radiation in improving colour strength and fastness characteristics of the extracted dye. The investigation of dyed fabric in spectraflash showed that gamma ray treatment of 30 kGy was the optimum absorbed dose for surface modification to improve its dye uptake ability. Good colour strength was obtained when irradiated cotton (RC, 30 kGy) was dyed with extract of radiated marigold flower powder (RP) at 70 °C for 85 min, keeping M:L of 1:50 using dye bath of pH 5.0. The results from mordanting experiments revealed that 7% of tannic acid as pre-mordant and 5% of Cu as post-mordant were the best treatments to improve colour strength. It was found that gamma ray induced extraction of lutein from marigold flowers had a potential to be utilized as natural dyes in textile sector to produce yellowish green shades.

Teaching Old Dyes New Tricks: Biological Probes Built from Fluoresceins and Rhodamines.

PubMed

Lavis, Luke D

2017-06-20

Small-molecule fluorophores, such as fluorescein and rhodamine derivatives, are critical tools in modern biochemical and biological research. The field of chemical dyes is old; colored molecules were first discovered in the 1800s, and the fluorescein and rhodamine scaffolds have been known for over a century. Nevertheless, there has been a renaissance in using these dyes to create tools for biochemistry and biology. The application of modern chemistry, biochemistry, molecular genetics, and optical physics to these old structures enables and drives the development of novel, sophisticated fluorescent dyes. This critical review focuses on an important example of chemical biology-the melding of old and new chemical knowledge-leading to useful molecules for advanced biochemical and biological experiments.

Diffuse Reflectance FT-IR Of Surface Modified Kevlar

NASA Astrophysics Data System (ADS)

Benrashid, R.; Tesoro, G.; McKenzie, M. T., Jr.

1989-12-01

Diffuse reflectance FT-IR (DRIFT) has been applied to the characterization of surface modified Kevlar 29 and 49 fibers. The surface modifications include amination and sulfonation. The standard DRIFT experiment has been modified in the manner first described by Koenig et.al. 1 who used a KBR overlayer to enhance surface functional IR bands. The results from the DRIFT experiment have been correlated with those from a standard dye test. The results for degree of modification are in reasonable agreement between the two measurement approaches. However, the dye experiment is time-consuming and inconvenient. DRIFT has been shown to be useful in characterizing modified Kevlar surfaces in as-used conditions.

The predictive value of methylene blue dye as a single technique in breast cancer sentinel node biopsy: a study from Dharmais Cancer Hospital.

PubMed

Brahma, Bayu; Putri, Rizky Ifandriani; Karsono, Ramadhan; Andinata, Bob; Gautama, Walta; Sari, Lenny; Haryono, Samuel J

2017-02-07

Axillary lymph node dissection (ALND) has been the standard treatment of breast cancer axillary staging in Indonesia. The limited facilities of radioisotope tracer and isosulfan or patent blue dye (PBD) have been the major obstacles to perform sentinel node biopsy (SNB) in our country. We studied the application of 1% methylene blue dye (MBD) alone for SNB to overcome the problem. This prospective study enrolled 108 patients with suspicious malignant lesions or breast cancer stages I-III. SNB was performed using 2-5 cc of 1% MBD and proceeded with ALND. The histopathology results of sentinel nodes (SNs) were compared with axillary lymph nodes (ALNs) for diagnostic value assessments. There were 96 patients with invasive carcinoma from July 2012 to September 2014 who were included in the final analysis. The median age was 50 (25-69) years, and the median pathological tumor size was 3 cm (1-10). Identification rate of SNs was 91.7%, and the median number of the identified SNs was 2 (1-8). Sentinel node metastasis was found in 53.4% cases and 89.4% of them were macrometastases. The negative predictive value (NPV) of SNs to predict axillary metastasis was 90% (95% CI, 81-99%). There were no anaphylactic reactions, but we found 2 cases with skin necrosis. The application of 1% MBD as a single technique in breast cancer SNB has favorable identification rates and predictive values. It can be used for axillary staging, but nevertheless the technique should be applied with attention to the tumor size and grade to avoid false negative results.

Combined thioflavin T-Congo red fluorescence assay for amyloid fibril detection

NASA Astrophysics Data System (ADS)

Girych, Mykhailo; Gorbenko, Galyna; Maliyov, Ivan; Trusova, Valeriya; Mizuguchi, Chiharu; Saito, Hiroyuki; Kinnunen, Paavo

2016-09-01

Fluorescence represents one of the most powerful tools for the detection and structural characterization of the pathogenic protein aggregates, amyloid fibrils. The traditional approaches to the identification and quantification of amyloid fibrils are based on monitoring the fluorescence changes of the benzothiazole dye thioflavin T (ThT) and absorbance changes of the azo dye Congo red (CR). In routine screening it is usually sufficient to perform only the ThT and CR assays, but both of them, when used separately, could give false results. Moreover, fibrillization kinetics can be measured only by ThT fluorescence, while the characteristic absorption spectra and birefringence of CR represent more rigid criteria for the presence of amyloid fibrils. Therefore, it seemed reasonable to use both these dyes simultaneously, combining the advantages of each technique. To this end, we undertook a detailed analysis of the fluorescence spectral behavior of these unique amyloid tracers upon their binding to amyloid fibrils from lysozyme, insulin and an N-terminal fragment of apolipoprotein A-I with Iowa mutation. The fluorescence measurements revealed several criteria for distinguishing between fibrillar and monomeric protein states: (i) a common drastic increase in ThT fluorescence intensity; (ii) a sharp decrease in ThT fluorescence upon addition of CR; (iii) an appearance of the maximum at 535-540 nm in the CR excitation spectra; (iv) increase in CR fluorescence intensity at 610 nm. Based on these findings we designed a novel combined ThT-CR fluorescence assay for amyloid identification. Such an approach not only strengthens the reliability of the ThT assay, but also provides new opportunities for structural characterization of amyloid fibrils.

Long-term mesocosm experiments to investigate microbial degradation of fluorescent tracers

NASA Astrophysics Data System (ADS)

Fernández-Pascual, Elena; Zaman, Sameera; Lang, Friederike; Lange, Jens

2017-04-01

Uranine (UR) and sulforhodamine B (SRB) are two of the most commonly used fluorescent tracers in hydrology. Their suitability to be used as ideal tracers has been discussed since they might interact with the soil or become degraded. However, these properties have recently served to mimic processes of sorption and degradation of pollutants. The present study attempts to investigate to what extent UR and SRB could be used to imitate such processes in environments where saturation conditions are variable and the presence of plants might play an important role. For this purpose, both tracers were applied to 36 small mesocosms filled with a layer of 10 cm of gravel and 30 cm of sand in which 6 types of treatments, with 3 replicates each, were implemented based on the presence of two species of wetland plants (Typha latifolia and Phalaris arundinacea) and two types of hydrological conditions (saturated and unsaturated). The entire experiment lasted 10 months, during which two injections of equal concentration of tracers were performed. The first months served to ensure the adaptability of the plants and to achieve stationary conditions in the system. Water and sediment samples were collected weekly after the second injection while plants were measured at the end of the experiment distinguishing between roots and aerial parts. Mass balances of the tracers were combined with excitation emission matrix fluorescence spectroscopy (EEMS) to characterize dissolved organic matter in the water and soil. Degradation was quantified by subtracting the non-degraded tracer fraction (sorption and plant uptake) and the remaining non-degraded mass in the water from the tracer mass injected. Results revealed that most of the SRB accumulated in the sand in agreement with its sorption affinity, while UR was mainly found in the pore water. Both tracers showed more degradation in the treatments with plants than the controls. Overall, UR exhibited higher degradation than SRB. Differences between plant species were not found for UR, whereas SRB showed more degradation with Phalaris than with Typha. The alternation of oxic and anoxic conditions in the unsaturated treatments increased the degradation of both tracers, especially SRB. Two components were identified by parallel factor analysis of the EEMS in addition to the UR, one humic-like associated with biological activity (C1) and one humic-like of terrestrial origin (C3). A high positive correlation (Spearman's rho = 0.81, p < 0.0001) between C1 and UR suggested a probable link, in which the increase of UR would lead to an increase of C1. This hypothesis was supported by the results from the controls, where UR exhibited the highest values of C1 while it was absent with SRB. This suggested a possible association of UR with microbial activity, which is in agreement with the high overall degradation rates found for UR. Further research is needed to confirm these results, but we see the combination of EEMS with tracer mass analysis as a promising way to provide additional information on processes of sorption and degradation of contaminants.

Age and Pathway Diagnostics for a Stratospheric General Circulation Model

NASA Technical Reports Server (NTRS)

Schoeberl, Mark R.; Douglass, Anne R.; Polansky, Brian

2004-01-01

Using a variety of age diagnostic experiments we examine the stratospheric age spectrum of the Goddard Finite Volume Generd Circulation Model. Pulse tracer release age-of-air computations are compared to forward and backward trajectory computations. These comparisons show good agreement, and the age-of-air also compares well with observed long lived tracers. Pathway diagnostics show how air arrives in the lowermost stratosphere and the age structure of that region. Using tracers with different lifetimes we can estimate the age spectrum - this technique should be useful in diagnosing transport from various trace gas observations.

Swimming invariant manifolds and the motion of bacteria in a fluid flow

NASA Astrophysics Data System (ADS)

Yoest, Helena; Mitchell, Kevin; Solomon, Tom

2017-11-01

We present experiments on the motion of both wild-type and smooth-swimming bacillus subtilis in a hyperbolic, microfluidic fluid flow. Passive invariant manifolds crossing the fixed point in the flow act as barriers that block inert tracers in the flow. Self-propelled tracers can cross these passive manifolds, but are blocked by and attracted to swimming invariant manifolds (SWIMs) that split from the passive manifolds with larger and larger non-dimensional swimming speed v0 ≡V0 / U , where V0 is the swimming speed in the absence of a flow and U is a characteristic flos speed. We present the theory that predicts these SWIMs for smooth-swimming tracers, along with experiments that we are conducting to test these theories. We also discuss potential effects of rheotaxis and chemotaxis on the phenomena. Supported by NSF Grant DMR-1361881.

Transport of microspheres and indigenous bacteria through a sandy aquifer: Results of natural- and forced-gradient tracer experiments

USGS Publications Warehouse

Harvey, R.W.; George, L.H.; Smith, R.L.; LeBlanc, D.R.

1989-01-01

Transport of indigenous bacteria through sandy aquifer sediments was investigated in forced- and natural-gradient tracer teste. A diverse population of bacteria was collected and concentrated from groundwater at the site, stained with a DNA-specific fluorochrome, and injected back into the aquifer. Included with the injectate were a conservative tracer (Br- or Cl-) and bacteria-sized (0.2-1.3-??m) microspheres having carboxylated, carbonyl, or neutral surfaces. Transport of stained bacteria and all types and size classes of microspheres was evident. In the natural-gradient test, both surface characteristics and size of microspheres affected attenuation. Surface characteristics had the greatest effect upon retardation. Peak break-through of DAPI-stained bacteria (forced-gradient experiment) occurred well in advance of bromide at the more distal sampler. Transport behavior of bacteria was substantially different from that of carboxylated microspheres of comparable size. ?? 1988 American Chemical Society.

Multitracer test for the determination of transport and in-situ degradation of organic micro-contaminants in karst aquifers on the example of caffeine

NASA Astrophysics Data System (ADS)

Hillebrand, O.; Nödler, K.; Licha, T.; Geyer, T.

2012-04-01

The application of organic micro-contaminants as indicators for contamination sources in aquifers and surface-water bodies has been increasingly discussed in the literature over the last years. One of the proposed substances was caffeine. It served as indicator for wastewater-leakage to various systems. As well, wastewater volumes could be estimated from caffeine concentrations. Although caffeine is known to be degradable, the degradation rates are normally only determined from mass balances or laboratory experiments. Degradation rates obtained from mass balances are relatively uncertain, as the input-function is difficult to be assessed. Laboratory experiments are hardly capable to consider the full complexity of natural systems and can rarely be transferred to those. To solve this problem, in-situ degradation rates of reactive indicators have to be determined. Especially multitracer tests can be used to access compound-specific transport parameters and degradation rates, relative to conservative tracers. A multitracer test with caffeine and uranine has been performed in a karst system (catchment of the Gallusquelle spring, SW Germany). From the breakthrough curves of the tracers, the transport behavior and the in-situ degradation rate of caffeine could be deduced. The tracers were injected into a sinkhole with a linear distance of 3000 m to the spring. The mean residence time of the tracers was found to be 84 h at a flow velocity of 35 m/h. Throughout the whole experiment, the spring discharge was constant at 187 L/s. Uranine served as conservative reference-tracer for the calibration of a one-dimensional transport model with respect to solute-unspecific parameters. Relative to that, the tracer breakthrough curve of caffeine was interpreted. As solute-specific parameters the retardation coefficient as well as degradation rate of caffeine in the investigated karst aquifer could be determined. The results indicate, that caffeine is slightly retarded in the investigated aquifer (R= 1.031-1.046) and is readily degradable (half-life t1/2= 90-105 h; temperature of the spring water T= 8-9 °C). The degradation rate is surprisingly high. In general, no significant degradation is believed to occur, during the rapid transport in karst systems. The high degradation rates of caffeine illustrate the potential to use this substance as reactive tracer to indicate biological activity within the aquifer. Due to the good degradability of caffeine it does not pose a threat as long-time contamination and can therefore safely be used as reactive tracer in aquifer systems.

Multiresponse modeling of variably saturated flow and isotope tracer transport for a hillslope experiment at the Landscape Evolution Observatory

NASA Astrophysics Data System (ADS)

Scudeler, Carlotta; Pangle, Luke; Pasetto, Damiano; Niu, Guo-Yue; Volkmann, Till; Paniconi, Claudio; Putti, Mario; Troch, Peter

2016-10-01

This paper explores the challenges of model parameterization and process representation when simulating multiple hydrologic responses from a highly controlled unsaturated flow and transport experiment with a physically based model. The experiment, conducted at the Landscape Evolution Observatory (LEO), involved alternate injections of water and deuterium-enriched water into an initially very dry hillslope. The multivariate observations included point measures of water content and tracer concentration in the soil, total storage within the hillslope, and integrated fluxes of water and tracer through the seepage face. The simulations were performed with a three-dimensional finite element model that solves the Richards and advection-dispersion equations. Integrated flow, integrated transport, distributed flow, and distributed transport responses were successively analyzed, with parameterization choices at each step supported by standard model performance metrics. In the first steps of our analysis, where seepage face flow, water storage, and average concentration at the seepage face were the target responses, an adequate match between measured and simulated variables was obtained using a simple parameterization consistent with that from a prior flow-only experiment at LEO. When passing to the distributed responses, it was necessary to introduce complexity to additional soil hydraulic parameters to obtain an adequate match for the point-scale flow response. This also improved the match against point measures of tracer concentration, although model performance here was considerably poorer. This suggests that still greater complexity is needed in the model parameterization, or that there may be gaps in process representation for simulating solute transport phenomena in very dry soils.

The influence of stream thermal regimes and preferential flow paths on hyporheic exchange in a glacial meltwater stream

USGS Publications Warehouse

Cozzetto, Karen D.; Bencala, Kenneth E.; Gooseff, Michael N.; McKnight, Diane M.

2013-01-01

Given projected increases in stream temperatures attributable to global change, improved understanding of relationships between stream temperatures and hyporheic exchange would be useful. We conducted two conservative tracer injection experiments in a glacial meltwater stream, to evaluate the effects of hyporheic thermal gradients on exchange processes, including preferential flow paths (PFPs). The experiments were conducted on the same day, the first (a stream injection) during a cool, morning period and the second (dual stream and hyporheic injections) during a warm, afternoon period. In the morning, the hyporheic zone was thermally uniform at 4°C, whereas by the afternoon the upper 10 cm had warmed to 6–12°C and exhibited greater temperature heterogeneity. Solute transport modeling showed that hyporheic cross-sectional areas (As) at two downstream sites were two and seven times lower during the warm experiment. Exchange metrics indicated that the hyporheic zone had less influence on downstream solute transport during the warm, afternoon experiment. Calculated hyporheic depths were less than 5 cm, contrasting with tracer detection at 10 and 25 cm depths. The hyporheic tracer arrival at one downstream site was rapid, comparable to the in-stream tracer arrival, providing evidence for PFPs. We thus propose a conceptual view of the hyporheic zone in this reach as being dominated by discrete PFPs weaving through hydraulically isolated areas. One explanation for the simultaneous increase in temperature heterogeneity and As decrease in a warmer hyporheic zone may be a flow path preferentiality feedback mechanism resulting from a combination of temperature-related viscosity decreases and streambed heterogeneity.

Combined interpretation of radar, hydraulic, and tracer data from a fractured-rock aquifer near Mirror Lake, New Hampshire, USA

USGS Publications Warehouse

Day-Lewis, F. D.; Lane, J.W.; Gorelick, S.M.

2006-01-01

An integrated interpretation of field experimental cross-hole radar, tracer, and hydraulic data demonstrates the value of combining time-lapse geophysical monitoring with conventional hydrologic measurements for improved characterization of a fractured-rock aquifer. Time-lapse difference-attenuation radar tomography was conducted during saline tracer experiments at the US Geological Survey Fractured Rock Hydrology Research Site near Mirror Lake, Grafton County, New Hampshire, USA. The presence of electrically conductive saline tracer effectively illuminates permeable fractures or pathways for geophysical imaging. The geophysical results guide the construction of three-dimensional numerical models of ground-water flow and solute transport. In an effort to explore alternative explanations for the tracer and tomographic data, a suite of conceptual models involving heterogeneous hydraulic conductivity fields and rate-limited mass transfer are considered. Calibration data include tracer concentrations, the arrival time of peak concentration at the outlet, and steady-state hydraulic head. Results from the coupled inversion procedure suggest that much of the tracer mass migrated outside the three tomographic image planes, and that solute is likely transported by two pathways through the system. This work provides basic and site-specific insights into the control of permeability heterogeneity on ground-water flow and solute transport in fractured rock. ?? Springer-Verlag 2004.

In situ measurement of methane oxidation in groundwater by using natural-gradient tracer tests

USGS Publications Warehouse

Smith, R.L.; Howes, B.L.; Garabedian, S.P.

1991-01-01

Methane oxidation was measured in an unconfined sand and gravel aquifer (Cape Cod, Mass.) by using in situ natural-gradient tracer tests at both a pristine, oxygenated site and an anoxic, sewage-contaminated site. The tracer sites were equipped with multilevel sampling devices to create target grids of sampling points; the injectate was prepared with groundwater from the tracer site to maintain the same geochemical conditions. Methane oxidation was calculated from breakthrough curves of methane relative to halide and inert gas (hexafluoroethane) tracers and was confirmed by the appearance of 13C-enriched carbon dioxide in experiments in which 13C-enriched methane was used as the tracer. A V(max) for methane oxidation could be calculated when the methane concentration was sufficiently high to result in zero-order kinetics throughout the entire transport interval. Methane breakthrough curves could be simulated by modifying a one-dimensional advection-dispersion transport model to include a Michaelis-Menten-based consumption term for methane oxidation. The K(m) values for methane oxidation that gave the best match for the breakthrough curve peaks were 6.0 and 9.0 ??M for the uncontaminated and contaminated sites, respectively. Natural-gradient tracer tests are a promising approach for assessing microbial processes and for testing in situ bioremediation potential in groundwater systems.

In situ measurement of methane oxidation in groundwater by using natural-gradient tracer tests.

PubMed Central

Smith, R L; Howes, B L; Garabedian, S P

1991-01-01

Methane oxidation was measured in an unconfined sand and gravel aquifer (Cape Cod, Mass.) by using in situ natural-gradient tracer tests at both a pristine, oxygenated site and an anoxic, sewage-contaminated site. The tracer sites were equipped with multilevel sampling devices to create target grids of sampling points; the injectate was prepared with groundwater from the tracer site to maintain the same geochemical conditions. Methane oxidation was calculated from breakthrough curves of methane relative to halide and inert gas (hexafluroethane) tracers and was confirmed by the appearance of 13C-enriched carbon dioxide in experiments in which 13C-enriched methane was used as the tracer. A Vmax for methane oxidation could be calculated when the methane concentration was sufficiently high to result in zero-order kinetics throughout the entire transport interval. Methane breakthrough curves could be simulated by modifying a one-dimensional adevection-dispersion transport model to include a Michaelis-Menten-based consumption term for methane oxidation. The Km values for methane oxidation that gave the best match for the breakthrough curve peaks were 6.0 and 9.0 microM for the uncontaminated and contaminated sites, respectively. Natural-gradient tracer tests are a promising approach for assessing microbial processes and for testing in situ bioremediation potential in groundwater systems. PMID:1892389

Short Time Exposure (STE) test in conjunction with Bovine Corneal Opacity and Permeability (BCOP) assay including histopathology to evaluate correspondence with the Globally Harmonized System (GHS) eye irritation classification of textile dyes.

PubMed

Oliveira, Gisele Augusto Rodrigues; Ducas, Rafael do Nascimento; Teixeira, Gabriel Campos; Batista, Aline Carvalho; Oliveira, Danielle Palma; Valadares, Marize Campos

2015-09-01

Eye irritation evaluation is mandatory for predicting health risks in consumers exposed to textile dyes. The two dyes, Reactive Orange 16 (RO16) and Reactive Green 19 (RG19) are classified as Category 2A (irritating to eyes) based on the UN Globally Harmonized System for classification (UN GHS), according to the Draize test. On the other hand, animal welfare considerations and the enforcement of a new regulation in the EU are drawing much attention in reducing or replacing animal experiments with alternative methods. This study evaluated the eye irritation of the two dyes RO16 and RG19 by combining the Short Time Exposure (STE) and the Bovine Corneal Opacity and Permeability (BCOP) assays and then comparing them with in vivo data from the GHS classification. The STE test (first level screening) categorized both dyes as GHS Category 1 (severe irritant). In the BCOP, dye RG19 was also classified as GHS Category 1 while dye RO16 was classified as GHS no prediction can be made. Both dyes caused damage to the corneal tissue as confirmed by histopathological analysis. Our findings demonstrated that the STE test did not contribute to arriving at a better conclusion about the eye irritation potential of the dyes when used in conjunction with the BCOP test. Adding the histopathology to the BCOP test could be an appropriate tool for a more meaningful prediction of the eye irritation potential of dyes. Copyright © 2015 Elsevier Ltd. All rights reserved.

Influence of pH for the determination of serum albumin by a dye-binding method in the presence of a detergent.

PubMed

Suzuki, Yuji

2008-08-01

In the dye-binding method, the absorbance increase caused by a protein error of a pH indicator is observed only in a restricted pH range. However, this pH range in the presence of a detergent has not yet been examined. Thus, the author investigated the pH (pH(UL)) where the absorbance increase becomes zero by a calculation based on the chemical equilibrium of a protein error of a pH indicator, and by experiments using four sulfonephthalein dyes. The pH(UL) value changed only with the detergent concentration, but did not change at all due to the dye, buffer solution or protein concentrations. Although the pH(UL) value was different according to the kind of dye used, it correlated well with the pK(D) values (dissociation constant) of BPB, BCG, BCP and BTB. The characteristics of pH(UL) in the reactions of the four dyes indicated good agreement with that obtained by a calculation.

Efficiencies of Dye-Sensitized Solar Cells using Ferritin-Encapsulated Quantum Dots with Various Staining Methods

NASA Astrophysics Data System (ADS)

Perez, Luis

Dye-sensitized solar cells (DSSC) have the potential to replace traditional and cost-inefficient crystalline silicon or ruthenium solar cells. This can only be accomplished by optimizing DSSC's energy efficiency. One of the major components in a dye-sensitized solar cell is the porous layer of titanium dioxide. This layer is coated with a molecular dye that absorbs sunlight. The research conducted for this paper focuses on the different methods used to dye the porous TiO2 layer with ferritin-encapsulated quantum dots. Multiple anodes were dyed using a method known as SILAR which involves deposition through alternate immersion in two different solutions. The efficiencies of DSSCs with ferritin-encapsulated lead sulfide dye deposited using SILAR were subsequently compared against the efficiencies produced by cells using the traditional immersion method. It was concluded that both methods resulted in similar efficiencies (? .074%) however, the SILAR method dyed the TiO2 coating significantly faster than the immersion method. On a related note, our experiments concluded that conducting 2 SILAR cycles yields the highest possible efficiency for this particular binding method. National Science Foundation.

A Rationally Designed, General Strategy for Membrane Orientation of Photoinduced Electron Transfer-Based Voltage-Sensitive Dyes.

PubMed

Kulkarni, Rishikesh U; Yin, Hang; Pourmandi, Narges; James, Feroz; Adil, Maroof M; Schaffer, David V; Wang, Yi; Miller, Evan W

2017-02-17

Voltage imaging with fluorescent dyes offers promise for interrogating the complex roles of membrane potential in coordinating the activity of neurons in the brain. Yet, low sensitivity often limits the broad applicability of optical voltage indicators. In this paper, we use molecular dynamics (MD) simulations to guide the design of new, ultrasensitive fluorescent voltage indicators that use photoinduced electron transfer (PeT) as a voltage-sensing switch. MD simulations predict an approximately 16% increase in voltage sensitivity resulting purely from improved alignment of dye with the membrane. We confirm this theoretical finding by synthesizing 9 new voltage-sensitive (VoltageFluor, or VF) dyes and establishing that all of them display the expected improvement of approximately 19%. This synergistic outworking of theory and experiment enabled computational and theoretical estimation of VF dye orientation in lipid bilayers and has yielded the most sensitive PeT-based VF dye to date. We use this new voltage indicator to monitor voltage spikes in neurons from rat hippocampus and human pluripotent-stem-cell-derived dopaminergic neurons.

Efficiency Improvement of Some Agricultural Residue Modified Materials for Textile Dyes Absorption

NASA Astrophysics Data System (ADS)

Boonsong, P.; Paksamut, J.

2018-03-01

In this work, the adsorption efficiency was investigated of some agricultural residue modified materials as natural bio-adsorbents which were rice straw (Oryza sativa L.) and pineapple leaves (Ananas comosus (L.) Merr.) for the removal of textile dyes. Reactive dyes were used in this research. The improvement procedure of agricultural residue materials properties were alkali-acid modification with sodium hydroxide solution and hydrochloric acid solution. Adsorption performance has been investigated using batch experiments. Investigated adsorption factors consisted of adsorbent dose, contact time, adsorbent materials and pH of solution. The results were found that rice straw had higher adsorption capacity than pineapple leaves. The increasing of adsorption capacity depends on adsorbent dose and contact time. Moreover, the optimum pH for dye adsorption was acidic range because lowering pH increased the positively charges on the adsorbent surface which could be attacked by negatively charge of acid dyes. The agricultural residue modified materials had significant dye removal efficiency which these adsorbents could be used for the treatment of textile effluent in industries.

Field studies of transport and dispersion of atmospheric tracers in nocturnal drainage flows

Treesearch

Paul H. Gudiksen; Gilbert J. Ferber; Malcolm M. Fowler; Wynn L. Eberhard; Michael A. Fosberg; William R. Knuth

1984-01-01

A series of tracer experiments were carried out as part of the Atmospheric Studies in Complex Terrain (ASCOT) program to evaluate pollutant transport and dispersion characteristics of nocturnal drainage flows within a valley in northern California. The results indicate that the degree of interaction of the drainage flows with the larger scale regional flows are...

A semi-Lagrangian advection scheme for radioactive tracers in a regional spectral model

NASA Astrophysics Data System (ADS)

Chang, E.-C.; Yoshimura, K.

2015-06-01

In this study, the non-iteration dimensional-split semi-Lagrangian (NDSL) advection scheme is applied to the National Centers for Environmental Prediction (NCEP) regional spectral model (RSM) to alleviate the Gibbs phenomenon. The Gibbs phenomenon is a problem wherein negative values of positive-definite quantities (e.g., moisture and tracers) are generated by the spectral space transformation in a spectral model system. To solve this problem, the spectral prognostic specific humidity and radioactive tracer advection scheme is replaced by the NDSL advection scheme, which considers advection of tracers in a grid system without spectral space transformations. A regional version of the NDSL is developed in this study and is applied to the RSM. Idealized experiments show that the regional version of the NDSL is successful. The model runs for an actual case study suggest that the NDSL can successfully advect radioactive tracers (iodine-131 and cesium-137) without noise from the Gibbs phenomenon. The NDSL can also remove negative specific humidity values produced in spectral calculations without losing detailed features.

Dual-TRACER: High resolution fMRI with constrained evolution reconstruction.

PubMed

Li, Xuesong; Ma, Xiaodong; Li, Lyu; Zhang, Zhe; Zhang, Xue; Tong, Yan; Wang, Lihong; Sen Song; Guo, Hua

2018-01-01

fMRI with high spatial resolution is beneficial for studies in psychology and neuroscience, but is limited by various factors such as prolonged imaging time, low signal to noise ratio and scarcity of advanced facilities. Compressed Sensing (CS) based methods for accelerating fMRI data acquisition are promising. Other advanced algorithms like k-t FOCUSS or PICCS have been developed to improve performance. This study aims to investigate a new method, Dual-TRACER, based on Temporal Resolution Acceleration with Constrained Evolution Reconstruction (TRACER), for accelerating fMRI acquisitions using golden angle variable density spiral. Both numerical simulations and in vivo experiments at 3T were conducted to evaluate and characterize this method. Results show that Dual-TRACER can provide functional images with a high spatial resolution (1×1mm 2 ) under an acceleration factor of 20 while maintaining hemodynamic signals well. Compared with other investigated methods, dual-TRACER provides a better signal recovery, higher fMRI sensitivity and more reliable activation detection. Copyright © 2017 Elsevier Inc. All rights reserved.

A Wavelet Based Suboptimal Kalman Filter for Assimilation of Stratospheric Chemical Tracer Observations

NASA Technical Reports Server (NTRS)

Auger, Ludovic; Tangborn, Andrew; Atlas, Robert (Technical Monitor)

2002-01-01

A suboptimal Kalman filter system which evolves error covariances in terms of a truncated set of wavelet coefficients has been developed for the assimilation of chemical tracer observations of CH4. The truncation is carried out in such a way that the resolution of the error covariance, is reduced only in the zonal direction, where gradients are smaller. Assimilation experiments which last 24 days, and used different degrees of truncation were carried out. These reduced the covariance, by 90, 97 and 99 % and the computational cost of covariance propagation by 80, 93 and 96 % respectively. The difference in both error covariance and the tracer field between the truncated and full systems over this period were found to be not growing in the first case, and a growing relatively slowly in the later two cases. The largest errors in the tracer fields were found to occur in regions of largest zonal gradients in the tracer field.

Using Neural Networks to Describe Tracer Correlations

NASA Technical Reports Server (NTRS)

Lary, D. J.; Mueller, M. D.; Mussa, H. Y.

2003-01-01

Neural networks are ideally suited to describe the spatial and temporal dependence of tracer-tracer correlations. The neural network performs well even in regions where the correlations are less compact and normally a family of correlation curves would be required. For example, the CH4-N2O correlation can be well described using a neural network trained with the latitude, pressure, time of year, and CH4 volume mixing ratio (v.m.r.). In this study a neural network using Quickprop learning and one hidden layer with eight nodes was able to reproduce the CH4-N2O correlation with a correlation co- efficient of 0.9995. Such an accurate representation of tracer-tracer correlations allows more use to be made of long-term datasets to constrain chemical models. Such as the dataset from the Halogen Occultation Experiment (HALOE) which has continuously observed CH4, (but not N2O) from 1991 till the present. The neural network Fortran code used is available for download.

Influence of hummocks and emergent vegetation on hydraulic performance in a surface flow wastewater treatment wetland

NASA Astrophysics Data System (ADS)

Keefe, Steffanie H.; Daniels, Joan S. (Thullen); Runkel, Robert L.; Wass, Roland D.; Stiles, Eric A.; Barber, Larry B.

2010-11-01

A series of tracer experiments were conducted biannually at the start and end of the vegetation growing season in a surface flow wastewater treatment wetland located near Phoenix, AZ. Tracer experiments were conducted prior to and following reconfiguration and replanting of a 1.2 ha treatment wetland from its original design of alternating shallow and deep zones to incorporate hummocks (shallow planting beds situated perpendicular to flow). Tracer test data were analyzed using analysis of moments and the one-dimensional transport with inflow and storage numerical model to evaluate the effects of the seasonal vegetation growth cycle and hummocks on solute transport. Following reconfiguration, vegetation coverage was relatively small, and minor changes in spatial distribution influenced wetland hydraulics. During start-up conditions, the wetland underwent an acclimation period characterized by small vegetation coverage and large transport cross-sectional areas. At the start of the growing season, new growth of emergent vegetation enhanced hydraulic performance. At the end of the growing season, senescing vegetation created short-circuiting. Wetland hydrodynamics were associated with high volumetric efficiencies and velocity heterogeneities. The hummock design resulted in breakthrough curves characterized by multiple secondary tracer peaks indicative of varied flow paths created by bottom topography.

Influence of hummocks and emergent vegetation on hydraulic performance in a surface flow wastewater treatment wetland

USGS Publications Warehouse

Keefe, Steffanie H.; Daniels, Joan S.; Runkel, Robert L.; Wass, Roland D.; Stiles, Eric A.; Barber, Larry B.

2010-01-01

A series of tracer experiments were conducted biannually at the start and end of the vegetation growing season in a surface flow wastewater treatment wetland located near Phoenix, AZ. Tracer experiments were conducted prior to and following reconfiguration and replanting of a 1.2 ha treatment wetland from its original design of alternating shallow and deep zones to incorporate hummocks (shallow planting beds situated perpendicular to flow). Tracer test data were analyzed using analysis of moments and the one‐dimensional transport with inflow and storage numerical model to evaluate the effects of the seasonal vegetation growth cycle and hummocks on solute transport. Following reconfiguration, vegetation coverage was relatively small, and minor changes in spatial distribution influenced wetland hydraulics. During start‐up conditions, the wetland underwent an acclimation period characterized by small vegetation coverage and large transport cross‐sectional areas. At the start of the growing season, new growth of emergent vegetation enhanced hydraulic performance. At the end of the growing season, senescing vegetation created short‐circuiting. Wetland hydrodynamics were associated with high volumetric efficiencies and velocity heterogeneities. The hummock design resulted in breakthrough curves characterized by multiple secondary tracer peaks indicative of varied flow paths created by bottom topography.

Photoacoustic infrared spectroscopy for conducting gas tracer tests and measuring water saturations in landfills

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jung, Yoojin; Han, Byunghyun; Mostafid, M. Erfan

2012-02-15

Highlights: Black-Right-Pointing-Pointer Photoacoustic infrared spectroscopy tested for measuring tracer gas in landfills. Black-Right-Pointing-Pointer Measurement errors for tracer gases were 1-3% in landfill gas. Black-Right-Pointing-Pointer Background signals from landfill gas result in elevated limits of detection. Black-Right-Pointing-Pointer Technique is much less expensive and easier to use than GC. - Abstract: Gas tracer tests can be used to determine gas flow patterns within landfills, quantify volatile contaminant residence time, and measure water within refuse. While gas chromatography (GC) has been traditionally used to analyze gas tracers in refuse, photoacoustic spectroscopy (PAS) might allow real-time measurements with reduced personnel costs and greater mobilitymore » and ease of use. Laboratory and field experiments were conducted to evaluate the efficacy of PAS for conducting gas tracer tests in landfills. Two tracer gases, difluoromethane (DFM) and sulfur hexafluoride (SF{sub 6}), were measured with a commercial PAS instrument. Relative measurement errors were invariant with tracer concentration but influenced by background gas: errors were 1-3% in landfill gas but 4-5% in air. Two partitioning gas tracer tests were conducted in an aerobic landfill, and limits of detection (LODs) were 3-4 times larger for DFM with PAS versus GC due to temporal changes in background signals. While higher LODs can be compensated by injecting larger tracer mass, changes in background signals increased the uncertainty in measured water saturations by up to 25% over comparable GC methods. PAS has distinct advantages over GC with respect to personnel costs and ease of use, although for field applications GC analyses of select samples are recommended to quantify instrument interferences.« less

An Advanced Reservoir Simulator for Tracer Transport in Multicomponent Multiphase Compositional Flow and Applications to the Cranfield CO2 Sequestration Site

NASA Astrophysics Data System (ADS)

Moortgat, J.

2015-12-01

Reservoir simulators are widely used to constrain uncertainty in the petrophysical properties of subsurface formations by matching the history of injection and production data. However, such measurements may be insufficient to uniquely characterize a reservoir's properties. Monitoring of natural (isotopic) and introduced tracers is a developing technology to further interrogate the subsurface for applications such as enhanced oil recovery from conventional and unconventional resources, and CO2 sequestration. Oak Ridge National Laboratory has been piloting this tracer technology during and following CO2 injection at the Cranfield, Mississippi, CO2 sequestration test site. Two campaigns of multiple perfluorocarbon tracers were injected together with CO2 and monitored at two wells at 68 m and 112 m from the injection site. The tracer data suggest that multiple CO2 flow paths developed towards the monitoring wells, indicative of either channeling through high permeability pathways or of fingering. The results demonstrate that tracers provide an important complement to transient pressure data. Numerical modeling is essential to further explain and interpret the observations. To aid the development of tracer technology, we enhanced a compositional multiphase reservoir simulator to account for tracer transport. Our research simulator uses higher-order finite element (FE) methods that can capture the small-scale onset of fingering on the coarse grids required for field-scale modeling, and allows for unstructured grids and anisotropic heterogeneous permeability fields. Mass transfer between fluid phases and phase behavior are modeled with rigorous equation-of-state based phase-split calculations. We present our tracer simulator and preliminary results related to the Cranfield experiments. Applications to noble gas tracers in unconventional resources are presented by Darrah et al.

Three-Dimensional Bayesian Geostatistical Aquifer Characterization at the Hanford 300 Area using Tracer Test Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Xingyuan; Murakami, Haruko; Hahn, Melanie S.

2012-06-01

Tracer testing under natural or forced gradient flow holds the potential to provide useful information for characterizing subsurface properties, through monitoring, modeling and interpretation of the tracer plume migration in an aquifer. Non-reactive tracer experiments were conducted at the Hanford 300 Area, along with constant-rate injection tests and electromagnetic borehole flowmeter (EBF) profiling. A Bayesian data assimilation technique, the method of anchored distributions (MAD) [Rubin et al., 2010], was applied to assimilate the experimental tracer test data with the other types of data and to infer the three-dimensional heterogeneous structure of the hydraulic conductivity in the saturated zone of themore » Hanford formation. In this study, the Bayesian prior information on the underlying random hydraulic conductivity field was obtained from previous field characterization efforts using the constant-rate injection tests and the EBF data. The posterior distribution of the conductivity field was obtained by further conditioning the field on the temporal moments of tracer breakthrough curves at various observation wells. MAD was implemented with the massively-parallel three-dimensional flow and transport code PFLOTRAN to cope with the highly transient flow boundary conditions at the site and to meet the computational demands of MAD. A synthetic study proved that the proposed method could effectively invert tracer test data to capture the essential spatial heterogeneity of the three-dimensional hydraulic conductivity field. Application of MAD to actual field data shows that the hydrogeological model, when conditioned on the tracer test data, can reproduce the tracer transport behavior better than the field characterized without the tracer test data. This study successfully demonstrates that MAD can sequentially assimilate multi-scale multi-type field data through a consistent Bayesian framework.« less

Retardation of mobile radionuclides in granitic rock fractures by matrix diffusion

NASA Astrophysics Data System (ADS)

Hölttä, P.; Poteri, A.; Siitari-Kauppi, M.; Huittinen, N.

Transport of iodide and sodium has been studied by means of block fracture and core column experiments to evaluate the simplified radionuclide transport concept. The objectives were to examine the processes causing retention in solute transport, especially matrix diffusion, and to estimate their importance during transport in different scales and flow conditions. Block experiments were performed using a Kuru Grey granite block having a horizontally planar natural fracture. Core columns were constructed from cores drilled orthogonal to the fracture of the granite block. Several tracer tests were performed using uranine, 131I and 22Na as tracers at water flow rates 0.7-50 μL min -1. Transport of tracers was modelled by applying the advection-dispersion model based on the generalized Taylor dispersion added with matrix diffusion. Scoping calculations were combined with experiments to test the model concepts. Two different experimental configurations could be modelled applying consistent transport processes and parameters. The processes, advection-dispersion and matrix diffusion, were conceptualized with sufficient accuracy to replicate the experimental results. The effects of matrix diffusion were demonstrated on the slightly sorbing sodium and mobile iodine breakthrough curves.

Application of ERT, Saline Tracer and Numerical Studies to Delineate Preferential Paths in Fractured Granites.

PubMed

Sreeparvathy, Vijay; Kambhammettu, B V N P; Peddinti, Srinivasa Rao; Sarada, P S L

2018-03-22

Accurate quantification of in situ heterogeneity and flow processes through fractured geologic media remains elusive for hydrogeologists due to the complexity in fracture characterization and its multiscale behavior. In this research, we demonstrated the efficacy of tracer-electrical resistivity tomography (ERT) experiments combined with numerical simulations to characterize heterogeneity and delineate preferential flow paths in a fractured granite aquifer. A series of natural gradient saline tracer experiments were conducted from a depth window of 18 to 22 m in an injection well (IW) located inside the Indian Institute of Technology Hyderabad campus. Tracer migration was monitored in a time-lapse mode using two cross-sectional surface ERT profiles placed in the direction of flow gradient. ERT data quality was improved by considering stacking, reciprocal measurements, resolution indicators, and geophysical logs. Dynamic changes in subsurface electrical properties inferred via resistivity anomalies were used to highlight preferential flow paths of the study area. Temporal changes in electrical resistivity and tracer concentration were monitored along the vertical in an observation well located at 48 m to the east of the IW. ERT-derived tracer breakthrough curves were in agreement with geochemical sample measurements. Fracture geometry and hydraulic properties derived from ERT and pumping tests were further used to evaluate two mathematical conceptualizations that are relevant to fractured aquifers. Results of numerical analysis conclude that dual continuum model that combines matrix and fracture systems through a flow exchange term has outperformed equivalent continuum model in reproducing tracer concentrations at the monitoring wells (evident by a decrease in RMSE from 199 to 65 mg/L). A sensitivity analysis on model simulations conclude that spatial variability in hydraulic conductivity, local-scale dispersion, and flow exchange at fracture-matrix interface have a profound effect on model simulations. © 2018, National Ground Water Association.

A novel fluorescent retrograde neural tracer: cholera toxin B conjugated carbon dots

NASA Astrophysics Data System (ADS)

Zhou, Nan; Hao, Zeyu; Zhao, Xiaohuan; Maharjan, Suraj; Zhu, Shoujun; Song, Yubin; Yang, Bai; Lu, Laijin

2015-09-01

The retrograde neuroanatomical tracing method is a key technique to study the complex interconnections of the nervous system. Traditional tracers have several drawbacks, including time-consuming immunohistochemical or immunofluorescent staining procedures, rapid fluorescence quenching and low fluorescence intensity. Carbon dots (CDs) have been widely used as a fluorescent bio-probe due to their ultrasmall size, excellent optical properties, chemical stability, biocompatibility and low toxicity. Herein, we develop a novel fluorescent neural tracer: cholera toxin B-carbon dot conjugates (CTB-CDs). It can be taken up and retrogradely transported by neurons in the peripheral nervous system of rats. Our results show that CTB-CDs possess high photoluminescence intensity, good optical stability, a long shelf-life and non-toxicity. Tracing with CTB-CDs is a direct and more economical way of performing retrograde labelling experiments. Therefore, CTB-CDs are reliable fluorescent retrograde tracers.The retrograde neuroanatomical tracing method is a key technique to study the complex interconnections of the nervous system. Traditional tracers have several drawbacks, including time-consuming immunohistochemical or immunofluorescent staining procedures, rapid fluorescence quenching and low fluorescence intensity. Carbon dots (CDs) have been widely used as a fluorescent bio-probe due to their ultrasmall size, excellent optical properties, chemical stability, biocompatibility and low toxicity. Herein, we develop a novel fluorescent neural tracer: cholera toxin B-carbon dot conjugates (CTB-CDs). It can be taken up and retrogradely transported by neurons in the peripheral nervous system of rats. Our results show that CTB-CDs possess high photoluminescence intensity, good optical stability, a long shelf-life and non-toxicity. Tracing with CTB-CDs is a direct and more economical way of performing retrograde labelling experiments. Therefore, CTB-CDs are reliable fluorescent retrograde tracers. Electronic supplementary information (ESI) available: PL spectra of CTB; absorption spectra of dialysate; fluorescence signal and immunohistochemical staining of CTB-CDs in L4 DRG. See DOI: 10.1039/c5nr04361a

The effect of physical back-diffusion of 13CO2 tracer on the coupling between photosynthesis and soil CO2 efflux in grassland.

PubMed

Burri, Susanne; Sturm, Patrick; Baur, Thomas; Barthel, Matti; Knohl, Alexander; Buchmann, Nina

2014-01-01

Pulse labelling experiments provide a common tool to study short-term processes in the plant-soil system and investigate below-ground carbon allocation as well as the coupling of soil CO(2) efflux to photosynthesis. During the first hours after pulse labelling, the measured isotopic signal of soil CO(2) efflux is a combination of both physical tracer diffusion into and out of the soil as well as biological tracer release via root and microbial respiration. Neglecting physical back-diffusion can lead to misinterpretation regarding time lags between photosynthesis and soil CO(2) efflux in grassland or any ecosystem type where the above-ground plant parts cannot be labelled in gas-tight chambers separated from the soil. We studied the effects of physical (13)CO(2) tracer back-diffusion in pulse labelling experiments in grassland, focusing on the isotopic signature of soil CO(2) efflux. Having accounted for back-diffusion, the estimated time lag for first tracer appearance in soil CO(2) efflux changed from 0 to 1.81±0.56 h (mean±SD) and the time lag for maximum tracer appearance from 2.67±0.39 to 9.63±3.32 h (mean±SD). Thus, time lags were considerably longer when physical tracer diffusion was considered. Using these time lags after accounting for physical back-diffusion, high nocturnal soil CO(2) efflux rates could be related to daytime rates of gross primary productivity (R(2)=0.84). Moreover, pronounced diurnal patterns in the δ(13)C of soil CO(2) efflux were found during the decline of the tracer over 3 weeks. Possible mechanisms include diurnal changes in the relative contributions of autotrophic and heterotrophic soil respiration as well as their respective δ(13)C values. Thus, after accounting for physical back-diffusion, we were able to quantify biological time lags in the coupling of photosynthesis and soil CO(2) efflux in grassland at the diurnal time scale.

Water and solute transport in agricultural soils predicted by volumetric clay and silt contents

NASA Astrophysics Data System (ADS)

Karup, Dan; Moldrup, Per; Paradelo, Marcos; Katuwal, Sheela; Norgaard, Trine; Greve, Mogens H.; de Jonge, Lis W.

2016-09-01

Solute transport through the soil matrix is non-uniform and greatly affected by soil texture, soil structure, and macropore networks. Attempts have been made in previous studies to use infiltration experiments to identify the degree of preferential flow, but these attempts have often been based on small datasets or data collected from literature with differing initial and boundary conditions. This study examined the relationship between tracer breakthrough characteristics, soil hydraulic properties, and basic soil properties. From six agricultural fields in Denmark, 193 intact surface soil columns 20 cm in height and 20 cm in diameter were collected. The soils exhibited a wide range in texture, with clay and organic carbon (OC) contents ranging from 0.03 to 0.41 and 0.01 to 0.08 kg kg- 1, respectively. All experiments were carried out under the same initial and boundary conditions using tritium as a conservative tracer. The breakthrough characteristics ranged from being near normally distributed to gradually skewed to the right along with an increase in the content of the mineral fines (particles ≤ 50 μm). The results showed that the mineral fines content was strongly correlated to functional soil structure and the derived tracer breakthrough curves (BTCs), whereas the OC content appeared less important for the shape of the BTC. Organic carbon was believed to support the stability of the soil structure rather than the actual formation of macropores causing preferential flow. The arrival times of 5% and up to 50% of the tracer mass were found to be strongly correlated with volumetric fines content. Predicted tracer concentration breakthrough points as a function of time up to 50% of applied tracer mass could be well fitted to an analytical solution to the classical advection-dispersion equation. Both cumulative tracer mass and concentration as a function of time were well predicted from the simple inputs of bulk density, clay and silt contents, and applied tracer mass. The new concept seems promising as a platform towards more accurate proxy functions for dissolved contaminant transport in intact soil.

Comparing the weight method and the use of the tracer Uranine for assessing pesticide drift on soils

NASA Astrophysics Data System (ADS)

Garcia-Santos, G.; Scheiben, D.; Leuenberger, F.; Binder, C. R.

2009-04-01

Drift from pesticide backpack-spraying is of major importance in the highlands of Colombia, where more than 20% be drifted by wind effects. This study assesses the usefulness of the weight method and the use of the tracer Uranine for assessing pesticide drift distribution on soils. The weight method has been used in developing countries and consists of weighing previously dried papers, installed close to the soil surface, before and after spraying a known amount of water. Relative humidity, temperature, direction and speed of the wind were monitored during the experiments. The tracer Uranine is often used for groundwater studies. Uranine was added to the water and sprayed by the farmer in the same way he would spray any pesticide mixture. The same papers used in the previous method were stored after the spraying and weighing. The tracer was extracted in water and analyzed using a fluorescent spectrometer. The advantage of Uranine over other tracers is its easy extraction with water and low detectable concentration. No solvents are required for the extraction. The experiments were performed during two months in the wet season in the region of Vereda la Hoya, Boyaca, Colombia at an altitude of 2800 m a.s.l., from September to October. Each experiment lasted about 30 min. The fast-changing meteorological conditions in the region affected the success of the weight method. The paper's weight was very sensitive to atmospheric high relative humidity and different evaporative conditions in grass and bare ground. Location of the blanks was essential and had to represent each of the different experimental evaporative conditions. Although the method was easy to implement, we consider that it is not appropriate for areas characterized by high evapotranspiration rates, and fast-changing climatic conditions as found in the Colombian highlands above 2800 m a.s.l. Whereas Uranine was not sensitive to different evapotranspiration rates nor fast changing climatic conditions, this method is affected by radiation, limiting its explanatory power during sunny days with high radiation. Remarkably, the drift measured with the weight method was on average 80% lower than the drift measured with Uranine. Very low values were only detectable with the tracer method. Therefore, the tracer Uranine is considered particularly suitable for assessing pesticide drift on soils in the highlands of Colombia.

Differential equation methods for simulation of GFP kinetics in non-steady state experiments.

PubMed

Phair, Robert D

2018-03-15

Genetically encoded fluorescent proteins, combined with fluorescence microscopy, are widely used in cell biology to collect kinetic data on intracellular trafficking. Methods for extraction of quantitative information from these data are based on the mathematics of diffusion and tracer kinetics. Current methods, although useful and powerful, depend on the assumption that the cellular system being studied is in a steady state, that is, the assumption that all the molecular concentrations and fluxes are constant for the duration of the experiment. Here, we derive new tracer kinetic analytical methods for non-steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes and linking them to a separate set of differential equations governing the kinetics of the fluorescent tracer. Linking the two sets of equations is based on a new application of the fundamental tracer principle of indistinguishability and, unlike current methods, supports correct dependence of tracer kinetics on cellular dynamics. This approach thus provides a general mathematical framework for applications of GFP fluorescence microscopy (including photobleaching [FRAP, FLIP] and photoactivation to frequently encountered experimental protocols involving physiological or pharmacological perturbations (e.g., growth factors, neurotransmitters, acute knockouts, inhibitors, hormones, cytokines, and metabolites) that initiate mechanistically informative intracellular transients. When a new steady state is achieved, these methods automatically reduce to classical steady state tracer kinetic analysis. © 2018 Phair. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).

Laboratory and numerical investigations of kinetic interface sensitive tracers transport for immiscible two-phase flow porous media systems

NASA Astrophysics Data System (ADS)

Tatomir, Alexandru Bogdan A. C.; Sauter, Martin

2017-04-01

A number of theoretical approaches estimating the interfacial area between two fluid phases are available (Schaffer et al.,2013). Kinetic interface sensitive (KIS) tracers are used to describe the evolution of fluid-fluid interfaces advancing in two phase porous media systems (Tatomir et al., 2015). Initially developed to offer answers about the supercritical (sc)CO2 plume movement and the efficiency of trapping in geological carbon storage reservoirs, KIS tracers are tested in dynamic controlled laboratory conditions. N-octane and water, analogue to a scCO2 - brine system, are used. The KIS tracer is dissolved in n-octane, which is injected as the non-wetting phase in a fully water saturated porous media column. The porous system is made up of spherical glass beads with sizes of 100-250 μm. Subsequently, the KIS tracer follows a hydrolysis reaction over the n-octane - water interface resulting in an acid and phenol which are both water soluble. The fluid-fluid interfacial area is described numerically with the help of constitutive-relationships derived from the Brooks-Corey model. The specific interfacial area is determined numerically from pore scale calculations, or from different literature sources making use of pore network model calculations (Joekar-Niasar et al., 2008). This research describes the design of the laboratory setup and compares the break-through curves obtained with the forward model and in the laboratory experiment. Furthermore, first results are shown in the attempt to validate the immiscible two phase flow reactive transport numerical model with dynamic laboratory column experiments. Keywords: Fluid-fluid interfacial area, KIS tracers, model validation, CCS, geological storage of CO2