Dynamic modeling of sludge compaction and consolidation processes in wastewater secondary settling tanks.

PubMed

Abusam, A; Keesman, K J

2009-01-01

The double exponential settling model is the widely accepted model for wastewater secondary settling tanks. However, this model does not estimate accurately solids concentrations in the settler underflow stream, mainly because sludge compression and consolidation processes are not considered. In activated sludge systems, accurate estimation of the solids in the underflow stream will facilitate the calibration process and can lead to correct estimates of particularly kinetic parameters related to biomass growth. Using principles of compaction and consolidation, as in soil mechanics, a dynamic model of the sludge consolidation processes taking place in the secondary settling tanks is developed and incorporated to the commonly used double exponential settling model. The modified double exponential model is calibrated and validated using data obtained from a full-scale wastewater treatment plant. Good agreement between predicted and measured data confirmed the validity of the modified model.

Three dimensional, non-linear, finite element analysis of compactable soil interaction with a hyperelastic wheel

NASA Astrophysics Data System (ADS)

Chiroux, Robert Charles

The objective of this research was to produce a three dimensional, non-linear, dynamic simulation of the interaction between a hyperelastic wheel rolling over compactable soil. The finite element models developed to produce the simulation utilized the ABAQUS/Explicit computer code. Within the simulation two separate bodies were modeled, the hyperelastic wheel and a compactable soil-bed. Interaction between the bodies was achieved by allowing them to come in contact but not to penetrate the contact surface. The simulation included dynamic loading of a hyperelastic, rubber tire in contact with compactable soil with an applied constant angular velocity or torque, including a tow load, applied to the wheel hub. The constraints on the wheel model produced a straight and curved path. In addition the simulation included a shear limit between the tire and soil allowing for the introduction of slip. Soil properties were simulated using the Drucker-Prager, Cap Plasticity model available within the ABAQUS/Explicit program. Numerical results obtained from the three dimensional model were compared with related experimental data and showed good correlation for similar conditions. Numerical and experimental data compared well for both stress and wheel rut formation depth under a weight of 5.8 kN and a constant angular velocity applied to the wheel hub. The simulation results provided a demonstration of the benefit of three-dimensional simulation in comparison to previous two-dimensional, plane strain simulations.

Dynamics of poroelastic foams

NASA Astrophysics Data System (ADS)

Forterre, Yoel; Sobac, Benjamin

2010-11-01

Soft poroelastic structures are widespread in biological tissues such as cartilaginous joints in bones, blood-filled placentae or plant organs. Here we investigate the dynamics of open elastic foams immersed in viscous fluids, as model soft poroelastic materials. The experiment consists in slowly compacting blocs of polyurethane solid foam embedded in silicon oil-tanks and studying their relaxation to equilibrium when the confining stress is suddenly released. Measurements of the local fluid pressure and foam velocity field are compared with a simple two-phase flow approach. For small initial compactions, the results show quantitative agreement with the classical diffusion theory of soil consolidation (Terzaghi, Biot). On the other hand, for large initial compactions, the dynamics exhibits long relaxation times and decompaction fronts, which are mainly controlled by the highly non-linear mechanical response of the foam. The analogy between this process and the evaporation of a polymer melt close to the glass transition will be briefly discussed.

Modeling of two-phase porous flow with damage

NASA Astrophysics Data System (ADS)

Cai, Z.; Bercovici, D.

2009-12-01

Two-phase dynamics has been broadly studied in Earth Science in a convective system. We investigate the basic physics of compaction with damage theory and present preliminary results of both steady state and time-dependent transport when melt migrates through porous medium. In our simple 1-D model, damage would play an important role when we consider the ascent of melt-rich mixture at constant velocity. Melt segregation becomes more difficult so that porosity is larger than that in simple compaction in the steady-state compaction profile. Scaling analysis for compaction equation is performed to predict the behavior of melt segregation with damage. The time-dependent of the compacting system is investigated by looking at solitary wave solutions to the two-phase model. We assume that the additional melt is injected to the fracture material through a single pulse with determined shape and velocity. The existence of damage allows the pulse to keep moving further than that in simple compaction. Therefore more melt could be injected to the two-phase mixture and future application such as carbon dioxide injection is proposed.

Combined static-dynamic compaction of metal powder and ceramic materials

NASA Astrophysics Data System (ADS)

Mironovs, V.; Korjakins, A.; Tatarinov, A.; Barone, E.; Glushchenkov, V.

2017-10-01

Combined static-dynamic compaction of powder material presents advantages for achievement of a higher degree of powder compaction for in dry conditions. One of possible realizations is the use of pulsed electromagnetic compaction (MPC) applied in addition to the static pre-compaction carried out by a hydraulic press. Experimental MPC equipment was used for compaction powders of SiC and Al-B with W fibers at different stages of grinding. The degree of compaction was evaluated by shock plate’s displacement at different levels and regimes of dynamic loading. The paper demonstrates feasibility of the method for compaction of the selected ceramic and metal powders and presents some quantitative data for practices.

Global dynamics of a delay differential equation with spatial non-locality in an unbounded domain

NASA Astrophysics Data System (ADS)

Yi, Taishan; Zou, Xingfu

In this paper, we study the global dynamics of a class of differential equations with temporal delay and spatial non-locality in an unbounded domain. Adopting the compact open topology, we describe the delicate asymptotic properties of the nonlocal delayed effect and establish some a priori estimate for nontrivial solutions which enables us to show the permanence of the equation. Combining these results with a dynamical systems approach, we determine the global dynamics of the equation under appropriate conditions. Applying the main results to the model with Ricker's birth function and Mackey-Glass's hematopoiesis function, we obtain threshold results for the global dynamics of these two models. We explain why our results on the global attractivity of the positive equilibrium in C∖{0} under the compact open topology becomes invalid in C∖{0} with respect to the usual supremum norm, and we identify a subset of C∖{0} in which the positive equilibrium remains attractive with respect to the supremum norm.

Dynamic compaction of granular materials

PubMed Central

Favrie, N.; Gavrilyuk, S.

2013-01-01

An Eulerian hyperbolic multiphase flow model for dynamic and irreversible compaction of granular materials is constructed. The reversible model is first constructed on the basis of the classical Hertz theory. The irreversible model is then derived in accordance with the following two basic principles. First, the entropy inequality is satisfied by the model. Second, the corresponding ‘intergranular stress’ coming from elastic energy owing to contact between grains decreases in time (the granular media behave as Maxwell-type materials). The irreversible model admits an equilibrium state corresponding to von Mises-type yield limit. The yield limit depends on the volume fraction of the solid. The sound velocity at the yield surface is smaller than that in the reversible model. The last one is smaller than the sound velocity in the irreversible model. Such an embedded model structure assures a thermodynamically correct formulation of the model of granular materials. The model is validated on quasi-static experiments on loading–unloading cycles. The experimentally observed hysteresis phenomena were numerically confirmed with a good accuracy by the proposed model. PMID:24353466

Towards developing a compact model for magnetization switching in straintronics magnetic random access memory devices

NASA Astrophysics Data System (ADS)

Barangi, Mahmood; Erementchouk, Mikhail; Mazumder, Pinaki

2016-08-01

Strain-mediated magnetization switching in a magnetic tunneling junction (MTJ) by exploiting a combination of piezoelectricity and magnetostriction has been proposed as an energy efficient alternative to spin transfer torque (STT) and field induced magnetization switching methods in MTJ-based magnetic random access memories (MRAM). Theoretical studies have shown the inherent advantages of strain-assisted switching, and the dynamic response of the magnetization has been modeled using the Landau-Lifshitz-Gilbert (LLG) equation. However, an attempt to use LLG for simulating dynamics of individual elements in large-scale simulations of multi-megabyte straintronics MRAM leads to extremely time-consuming calculations. Hence, a compact analytical solution, predicting the flipping delay of the magnetization vector in the nanomagnet under stress, combined with a liberal approximation of the LLG dynamics in the straintronics MTJ, can lead to a simplified model of the device suited for fast large-scale simulations of multi-megabyte straintronics MRAMs. In this work, a tensor-based approach is developed to study the dynamic behavior of the stressed nanomagnet. First, using the developed method, the effect of stress on the switching behavior of the magnetization is investigated to realize the margins between the underdamped and overdamped regimes. The latter helps the designer realize the oscillatory behavior of the magnetization when settling along the minor axis, and the dependency of oscillations on the stress level and the damping factor. Next, a theoretical model to predict the flipping delay of the magnetization vector is developed and tested against LLG-based numerical simulations to confirm the accuracy of findings. Lastly, the obtained delay is incorporated into the approximate solutions of the LLG dynamics, in order to create a compact model to liberally and quickly simulate the magnetization dynamics of the MTJ under stress. Using the developed delay equation, the efficiency of the straintronics switching over the STT method is highlighted by analytically investigating the energy-delay trade-off of both methodologies.

Towards developing a compact model for magnetization switching in straintronics magnetic random access memory devices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barangi, Mahmood, E-mail: barangi@umich.edu; Erementchouk, Mikhail; Mazumder, Pinaki

Strain-mediated magnetization switching in a magnetic tunneling junction (MTJ) by exploiting a combination of piezoelectricity and magnetostriction has been proposed as an energy efficient alternative to spin transfer torque (STT) and field induced magnetization switching methods in MTJ-based magnetic random access memories (MRAM). Theoretical studies have shown the inherent advantages of strain-assisted switching, and the dynamic response of the magnetization has been modeled using the Landau-Lifshitz-Gilbert (LLG) equation. However, an attempt to use LLG for simulating dynamics of individual elements in large-scale simulations of multi-megabyte straintronics MRAM leads to extremely time-consuming calculations. Hence, a compact analytical solution, predicting the flippingmore » delay of the magnetization vector in the nanomagnet under stress, combined with a liberal approximation of the LLG dynamics in the straintronics MTJ, can lead to a simplified model of the device suited for fast large-scale simulations of multi-megabyte straintronics MRAMs. In this work, a tensor-based approach is developed to study the dynamic behavior of the stressed nanomagnet. First, using the developed method, the effect of stress on the switching behavior of the magnetization is investigated to realize the margins between the underdamped and overdamped regimes. The latter helps the designer realize the oscillatory behavior of the magnetization when settling along the minor axis, and the dependency of oscillations on the stress level and the damping factor. Next, a theoretical model to predict the flipping delay of the magnetization vector is developed and tested against LLG-based numerical simulations to confirm the accuracy of findings. Lastly, the obtained delay is incorporated into the approximate solutions of the LLG dynamics, in order to create a compact model to liberally and quickly simulate the magnetization dynamics of the MTJ under stress. Using the developed delay equation, the efficiency of the straintronics switching over the STT method is highlighted by analytically investigating the energy-delay trade-off of both methodologies.« less

Simulation of nanopowder compaction in terms of granular dynamics

NASA Astrophysics Data System (ADS)

Boltachev, G. Sh.; Volkov, N. B.

2011-07-01

The uniaxial compaction of nanopowders is simulated using the granular dynamics in the 2D geometry. The initial arrangement of particles is represented by (i) a layer of particles executing Brownian motion (isotropic structures) and (ii) particles falling in the gravity field (anisotropic structures). The influence of size effects and the size of a model cell on the properties of the structures are studied. The compaction of the model cell is simulated with regard to Hertz elastic forces between particles, Cattaneo-Mindlin-Deresiewicz shear friction forces, and van der Waals-Hamaker dispersion forces of attraction. Computation is performed for monodisperse powders with particle sizes ranging from 10 to 400 nm and for "cohesionless" powder, in which attractive forces are absent. It is shown that taking into account dispersion forces makes it possible to simulate the size effect in the nanopowder compaction: the compressibility of the nanopowder drops as the particles get finer. The mean coordination number and the axial and lateral pressures in the powder systems are found, and the effect of the density and isotropy of the initial structure on the compressibility is analyzed. The applicability of well-known Rumpf's formula for the size effect is discussed.

Three-dimensional simulations of nanopowder compaction processes by granular dynamics method.

PubMed

Boltachev, G Sh; Lukyashin, K E; Shitov, V A; Volkov, N B

2013-07-01

In order to describe and to study the processes of cold compaction within the discrete element method a three-dimensional model of nanosized powder is developed. The elastic forces of repulsion, the tangential forces of "friction" (Cattaneo-Mindlin), and the dispersion forces of attraction (van der Waals-Hamaker), as well as the formation and destruction of hard bonds between the individual particles are taken into account. The monosized powders with the size of particles in the range 10-40 nm are simulated. The simulation results are compared to the experimental data of the alumina nanopowders compaction. It is shown that the model allows us to reproduce experimental data reliably and, in particular, describes the size effect in the compaction processes. A number of different external loading conditions is used in order to perform the theoretical and experimental researches. The uniaxial compaction (the closed-die compaction), the biaxial (radial) compaction, and the isotropic compaction (the cold isostatic pressing) are studied. The real and computed results are in a good agreement with each other. They reveal a weak sensitivity of the oxide nanopowders to the loading condition (compaction geometry). The application of the continuum theory of the plastically hardening porous body, which is usually used for the description of powders, is discussed.

Three-dimensional simulations of nanopowder compaction processes by granular dynamics method

NASA Astrophysics Data System (ADS)

Boltachev, G. Sh.; Lukyashin, K. E.; Shitov, V. A.; Volkov, N. B.

2013-07-01

In order to describe and to study the processes of cold compaction within the discrete element method a three-dimensional model of nanosized powder is developed. The elastic forces of repulsion, the tangential forces of “friction” (Cattaneo-Mindlin), and the dispersion forces of attraction (van der Waals-Hamaker), as well as the formation and destruction of hard bonds between the individual particles are taken into account. The monosized powders with the size of particles in the range 10-40 nm are simulated. The simulation results are compared to the experimental data of the alumina nanopowders compaction. It is shown that the model allows us to reproduce experimental data reliably and, in particular, describes the size effect in the compaction processes. A number of different external loading conditions is used in order to perform the theoretical and experimental researches. The uniaxial compaction (the closed-die compaction), the biaxial (radial) compaction, and the isotropic compaction (the cold isostatic pressing) are studied. The real and computed results are in a good agreement with each other. They reveal a weak sensitivity of the oxide nanopowders to the loading condition (compaction geometry). The application of the continuum theory of the plastically hardening porous body, which is usually used for the description of powders, is discussed.

Sensitivity study of a dynamic thermodynamic sea ice model

NASA Astrophysics Data System (ADS)

Holland, David M.; Mysak, Lawrence A.; Manak, Davinder K.; Oberhuber, Josef M.

1993-02-01

A numerical simulation of the seasonal sea ice cover in the Arctic Ocean and the Greenland, Iceland, and Norwegian seas is presented. The sea ice model is extracted from Oberhuber's (1990) coupled sea ice-mixed layer-isopycnal general circulation model and is written in spherical coordinates. The advantage of such a model over previous sea ice models is that it can be easily coupled to either global atmospheric or ocean general circulation models written in spherical coordinates. In this model, the thermodynamics are a modification of that of Parkinson and Washington (1979), while the dynamics use the full Hibler (1979) viscous-plastic rheology. Monthly thermodynamic and dynamic forcing fields for the atmosphere and ocean are specified. The simulations of the seasonal cycle of ice thickness, compactness, and velocity, for a control set of parameters, compare favorably with the known seasonal characteristics of these fields. A sensitivity study of the control simulation of the seasonal sea ice cover is presented. The sensitivity runs are carried out under three different themes, namely, numerical conditions, parameter values, and physical processes. This last theme refers to experiments in which physical processes are either newly added or completely removed from the model. Approximately 80 sensitivity runs have been performed in which a change from the control run environment has been implemented. Comparisons have been made between the control run and a particular sensitivity run based on time series of the seasonal cycle of the domain-averaged ice thickness, compactness, areal coverage, and kinetic energy. In addition, spatially varying fields of ice thickness, compactness, velocity, and surface temperature for each season are presented for selected experiments. A brief description and discussion of the more interesting experiments are presented. The simulation of the seasonal cycle of Arctic sea ice cover is shown to be robust.

Cytology of DNA Replication Reveals Dynamic Plasticity of Large-Scale Chromatin Fibers.

PubMed

Deng, Xiang; Zhironkina, Oxana A; Cherepanynets, Varvara D; Strelkova, Olga S; Kireev, Igor I; Belmont, Andrew S

2016-09-26

In higher eukaryotic interphase nuclei, the 100- to >1,000-fold linear compaction of chromatin is difficult to reconcile with its function as a template for transcription, replication, and repair. It is challenging to imagine how DNA and RNA polymerases with their associated molecular machinery would move along the DNA template without transient decondensation of observed large-scale chromatin "chromonema" fibers [1]. Transcription or "replication factory" models [2], in which polymerases remain fixed while DNA is reeled through, are similarly difficult to conceptualize without transient decondensation of these chromonema fibers. Here, we show how a dynamic plasticity of chromatin folding within large-scale chromatin fibers allows DNA replication to take place without significant changes in the global large-scale chromatin compaction or shape of these large-scale chromatin fibers. Time-lapse imaging of lac-operator-tagged chromosome regions shows no major change in the overall compaction of these chromosome regions during their DNA replication. Improved pulse-chase labeling of endogenous interphase chromosomes yields a model in which the global compaction and shape of large-Mbp chromatin domains remains largely invariant during DNA replication, with DNA within these domains undergoing significant movements and redistribution as they move into and then out of adjacent replication foci. In contrast to hierarchical folding models, this dynamic plasticity of large-scale chromatin organization explains how localized changes in DNA topology allow DNA replication to take place without an accompanying global unfolding of large-scale chromatin fibers while suggesting a possible mechanism for maintaining epigenetic programming of large-scale chromatin domains throughout DNA replication. Copyright © 2016 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stefek, T.; Daugherty, W.; Estochen, E.

Compaction of lower layers in the fiberboard assembly has been observed in 9975 packages that contain elevated moisture. Lab testing has resulted in a better understanding of the relationship between the fiberboard moisture level and compaction of the lower fiberboard assembly, and the behavior of the fiberboard during transport. In laboratory tests of cane fiberboard, higher moisture content has been shown to correspond to higher total compaction, greater rate of compaction, and continued compaction over a longer period of time. In addition, laboratory tests have shown that the application of a dynamic load results in higher fiberboard compaction compared tomore » a static load. The test conditions and sample geometric/loading configurations were chosen to simulate the regulatory requirements for 9975 package input dynamic loading. Dynamic testing was conducted to acquire immediate and cumulative changes in geometric data for various moisture levels. Two sample sets have undergone a complete dynamic test regimen, one set for 27 weeks, and the second set for 47 weeks. The dynamic input, data acquisition, test effects on sample dynamic parameters, and results from this test program are summarized and compared to regulatory specifications for dynamic loading. Compaction of the bottom fiberboard layers due to the accumulation of moisture is one possible cause of an increase in the axial gap at the top of the package. The net compaction of the bottom layers will directly add to the axial gap. The moisture which caused this compaction migrated from the middle region of the fiberboard assembly (which is typically the hottest). This will cause the middle region to shrink axially, which will also contribute directly to the axial gap. Measurement of the axial gap provides a screening tool for identifying significant change in the fiberboard condition. The data in this report provide a basis to evaluate the impact of moisture and fiberboard compaction on 9975 package performance during storage at the Savannah River Site (SRS).« less

Inverse modeling of geochemical and mechanical compaction in sedimentary basins

NASA Astrophysics Data System (ADS)

Colombo, Ivo; Porta, Giovanni Michele; Guadagnini, Alberto

2015-04-01

We study key phenomena driving the feedback between sediment compaction processes and fluid flow in stratified sedimentary basins formed through lithification of sand and clay sediments after deposition. Processes we consider are mechanic compaction of the host rock and the geochemical compaction due to quartz cementation in sandstones. Key objectives of our study include (i) the quantification of the influence of the uncertainty of the model input parameters on the model output and (ii) the application of an inverse modeling technique to field scale data. Proper accounting of the feedback between sediment compaction processes and fluid flow in the subsurface is key to quantify a wide set of environmentally and industrially relevant phenomena. These include, e.g., compaction-driven brine and/or saltwater flow at deep locations and its influence on (a) tracer concentrations observed in shallow sediments, (b) build up of fluid overpressure, (c) hydrocarbon generation and migration, (d) subsidence due to groundwater and/or hydrocarbons withdrawal, and (e) formation of ore deposits. Main processes driving the diagenesis of sediments after deposition are mechanical compaction due to overburden and precipitation/dissolution associated with reactive transport. The natural evolution of sedimentary basins is characterized by geological time scales, thus preventing direct and exhaustive measurement of the system dynamical changes. The outputs of compaction models are plagued by uncertainty because of the incomplete knowledge of the models and parameters governing diagenesis. Development of robust methodologies for inverse modeling and parameter estimation under uncertainty is therefore crucial to the quantification of natural compaction phenomena. We employ a numerical methodology based on three building blocks: (i) space-time discretization of the compaction process; (ii) representation of target output variables through a Polynomial Chaos Expansion (PCE); and (iii) model inversion (parameter estimation) within a maximum likelihood framework. In this context, the PCE-based surrogate model enables one to (i) minimize the computational cost associated with the (forward and inverse) modeling procedures leading to uncertainty quantification and parameter estimation, and (ii) compute the full set of Sobol indices quantifying the contribution of each uncertain parameter to the variability of target state variables. Results are illustrated through the simulation of one-dimensional test cases. The analyses focuses on the calibration of model parameters through literature field cases. The quality of parameter estimates is then analyzed as a function of number, type and location of data.

A supermassive black hole in an ultra-compact dwarf galaxy.

PubMed

Seth, Anil C; van den Bosch, Remco; Mieske, Steffen; Baumgardt, Holger; den Brok, Mark; Strader, Jay; Neumayer, Nadine; Chilingarian, Igor; Hilker, Michael; McDermid, Richard; Spitler, Lee; Brodie, Jean; Frank, Matthias J; Walsh, Jonelle L

2014-09-18

Ultra-compact dwarf galaxies are among the densest stellar systems in the Universe. These systems have masses of up to 2 × 10(8) solar masses, but half-light radii of just 3-50 parsecs. Dynamical mass estimates show that many such dwarfs are more massive than expected from their luminosity. It remains unclear whether these high dynamical mass estimates arise because of the presence of supermassive black holes or result from a non-standard stellar initial mass function that causes the average stellar mass to be higher than expected. Here we report adaptive optics kinematic data of the ultra-compact dwarf galaxy M60-UCD1 that show a central velocity dispersion peak exceeding 100 kilometres per second and modest rotation. Dynamical modelling of these data reveals the presence of a supermassive black hole with a mass of 2.1 × 10(7) solar masses. This is 15 per cent of the object's total mass. The high black hole mass and mass fraction suggest that M60-UCD1 is the stripped nucleus of a galaxy. Our analysis also shows that M60-UCD1's stellar mass is consistent with its luminosity, implying a large population of previously unrecognized supermassive black holes in other ultra-compact dwarf galaxies.

Dynamic loading and release in Johnson Space Center Lunar regolith simulant

NASA Astrophysics Data System (ADS)

Plesko, C. S.; Jensen, B. J.; Wescott, B. L.; Skinner McKee, T. E.

2011-10-01

The behavior of regolith under dynamic loading is important for the study of planetary evolution, impact cratering, and other topics. Here we present the initial results of explosively driven flier plate experiments and numerical models of compaction and release in samples of the JSC-1A Lunar regolith simulant.

Stress wave propagation and mitigation in two polymeric foams

NASA Astrophysics Data System (ADS)

Pradel, Pierre; Malaise, Frederic; Cadilhon, Baptiste; Quessada, Jean-Hugues; de Resseguier, Thibaut; Delhomme, Catherine; Le Blanc, Gael

2017-06-01

Polymeric foams are widely used in industry for thermal insulation or shock mitigation. This paper investigates the ability of a syntactic epoxy foam and an expanded polyurethane foam to mitigate intense (several GPa) and short duration (<10-6 s) stress pulses. Plate impact and electron beam irradiation experiments have been conducted to study the dynamic mechanical responses of both foams. Interferometer Doppler Laser method is used to record the target rear surface velocity. A two-wave structure associated with the propagation of an elastic precursor followed by the compaction of the pores has been observed. The compaction stress level deduced from the velocity measurement is a good indicator of mitigation capability of the foams. Quasi-static tests and dynamic soft recovery experiments have also been performed to determine the compaction mechanisms. In the polyurethane foam, the pores are closed by elastic buckling of the matrix and damage of the structure. In the epoxy foam, the compaction is due to the crushing of glass microspheres. Two porous material models successfully represent the macroscopic response of these polymeric foams.

ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology.

PubMed

Bittig, Arne T; Uhrmacher, Adelinde M

2017-01-01

Spatio-temporal dynamics of cellular processes can be simulated at different levels of detail, from (deterministic) partial differential equations via the spatial Stochastic Simulation algorithm to tracking Brownian trajectories of individual particles. We present a spatial simulation approach for multi-level rule-based models, which includes dynamically hierarchically nested cellular compartments and entities. Our approach ML-Space combines discrete compartmental dynamics, stochastic spatial approaches in discrete space, and particles moving in continuous space. The rule-based specification language of ML-Space supports concise and compact descriptions of models and to adapt the spatial resolution of models easily.

Cosmology on a cosmic ring

DOE Office of Scientific and Technical Information (OSTI.GOV)

Niedermann, Florian; Schneider, Robert, E-mail: florian.niedermann@physik.lmu.de, E-mail: robert.bob.schneider@physik.uni-muenchen.de

We derive the modified Friedmann equations for a generalization of the Dvali-Gabadadze-Porrati (DGP) model in which the brane has one additional compact dimension. The main new feature is the emission of gravitational waves into the bulk. We study two classes of solutions: first, if the compact dimension is stabilized, the waves vanish and one exactly recovers DGP cosmology. However, a stabilization by means of physical matter is not possible for a tension-dominated brane, thus implying a late time modification of 4D cosmology different from DGP. Second, for a freely expanding compact direction, we find exact attractor solutions with zero 4Dmore » Hubble parameter despite the presence of a 4D cosmological constant. The model hence constitutes an explicit example of dynamical degravitation at the full nonlinear level. Without stabilization, however, there is no 4D regime and the model is ruled out observationally, as we demonstrate explicitly by comparing to supernova data.« less

Overpressure generation by load transfer following shale framework weakening due to smectite diagenesis

USGS Publications Warehouse

Lahann, R.W.; Swarbrick, R.E.

2011-01-01

Basin model studies which have addressed the importance of smectite conversion to illite as a source of overpressure in the Gulf of Mexico have principally relied on a single-shale compaction model and treated the smectite reaction as only a fluid-source term. Recent fluid pressure interpretation and shale petrology studies indicate that conversion of bound water to mobile water, dissolution of load-bearing grains, and increased preferred orientation change the compaction properties of the shale. This results in substantial changes in effective stress and fluid pressure. The resulting fluid pressure can be 1500-3000psi higher than pressures interpreted from models based on shallow compaction trends. Shale diagenesis changes the mineralogy, volume, and orientation of the load-bearing grains in the shale as well as the volume of bound water. This process creates a weaker (more compactable) grain framework. When these changes occur without fluid export from the shale, some of the stress is transferred from the grains onto the fluid. Observed relationships between shale density and calculated effective stress in Gulf of Mexico shelf wells confirm these changes in shale properties with depth. Further, the density-effective stress changes cannot be explained by fluid-expansion or fluid-source processes or by prediagenesis compaction, but are consistent with a dynamic diagenetic modification of the shale mineralogy, texture, and compaction properties during burial. These findings support the incorporation of diagenetic modification of compaction properties as part of the fluid pressure interpretation process. ?? 2011 Blackwell Publishing Ltd.

Strange matter in compact stars

NASA Astrophysics Data System (ADS)

Klähn, Thomas; Blaschke, David B.

2018-02-01

We discuss possible scenarios for the existence of strange matter in compact stars. The appearance of hyperons leads to a hyperon puzzle in ab-initio approaches based on effective baryon-baryon potentials but is not a severe problem in relativistic mean field models. In general, the puzzle can be resolved in a natural way if hadronic matter gets stiffened at supersaturation densities, an effect based on the quark Pauli quenching between hadrons. We explain the conflict between the necessity to implement dynamical chiral symmetry breaking into a model description and the conditions for the appearance of absolutely stable strange quark matter that require both, approximately masslessness of quarks and a mechanism of confinement. The role of strangeness in compact stars (hadronic or quark matter realizations) remains unsettled. It is not excluded that strangeness plays no role in compact stars at all. To answer the question whether the case of absolutely stable strange quark matter can be excluded on theoretical grounds requires an understanding of dense matter that we have not yet reached.

Influence of particle size distribution on nanopowder cold compaction processes

NASA Astrophysics Data System (ADS)

Boltachev, G.; Volkov, N.; Lukyashin, K.; Markov, V.; Chingina, E.

2017-06-01

Nanopowder uniform and uniaxial cold compaction processes are simulated by 2D granular dynamics method. The interaction of particles in addition to wide-known contact laws involves the dispersion forces of attraction and possibility of interparticle solid bridges formation, which have a large importance for nanopowders. Different model systems are investigated: monosized systems with particle diameter of 10, 20 and 30 nm; bidisperse systems with different content of small (diameter is 10 nm) and large (30 nm) particles; polydisperse systems corresponding to the log-normal size distribution law with different width. Non-monotone dependence of compact density on powder content is revealed in bidisperse systems. The deviations of compact density in polydisperse systems from the density of corresponding monosized system are found to be minor, less than 1 per cent.

Compaction-Based Deformable Terrain Model as an Interface for Real-Time Vehicle Dynamics Simulations

DTIC Science & Technology

2013-04-16

to vehicular loads, and the resulting visco-elastic-plastic stress/strain on the affected soil volume. Pedo transfer functions allow for the...resulting visco-elastic-plastic stress/strain on the affected soil volume. Pedo transfer functions allow for the calculation of the soil mechanics model

Compact Objects In Binary Systems: Formation and Evolution of X-ray Binaries and Tides in Double White Dwarfs

NASA Astrophysics Data System (ADS)

Valsecchi, Francesca

Binary star systems hosting black holes, neutron stars, and white dwarfs are unique laboratories for investigating both extreme physical conditions, and stellar and binary evolution. Black holes and neutron stars are observed in X-ray binaries, where mass accretion from a stellar companion renders them X-ray bright. Although instruments like Chandra have revolutionized the field of X-ray binaries, our theoretical understanding of their origin and formation lags behind. Progress can be made by unravelling the evolutionary history of observed systems. As part of my thesis work, I have developed an analysis method that uses detailed stellar models and all the observational constraints of a system to reconstruct its evolutionary path. This analysis models the orbital evolution from compact-object formation to the present time, the binary orbital dynamics due to explosive mass loss and a possible kick at core collapse, and the evolution from the progenitor's Zero Age Main Sequence to compact-object formation. This method led to a theoretical model for M33 X-7, one of the most massive X-ray binaries known and originally marked as an evolutionary challenge. Compact objects are also expected gravitational wave (GW) sources. In particular, double white dwarfs are both guaranteed GW sources and observed electromagnetically. Although known systems show evidence of tidal deformation and a successful GW astronomy requires realistic models of the sources, detached double white dwarfs are generally approximated to point masses. For the first time, I used realistic models to study tidally-driven periastron precession in eccentric binaries. I demonstrated that its imprint on the GW signal yields constrains on the components' masses and that the source would be misclassified if tides are neglected. Beyond this adiabatic precession, tidal dissipation creates a sink of orbital angular momentum. Its efficiency is strongest when tides are dynamic and excite the components' free oscillation modes. Accounting for this effect will determine whether our interpretation of current and future observations will constrain the sources' true physical properties. To investigate dynamic tides I have developed CAFein, a novel code that calculates forced non-adiabatic stellar oscillations using a highly stable and efficient numerical method.

The Number Density of Quiescent Compact Galaxies at Intermediate Redshift

NASA Astrophysics Data System (ADS)

Damjanov, Ivana; Hwang, Ho Seong; Geller, Margaret J.; Chilingarian, Igor

2014-09-01

Massive compact systems at 0.2 < z < 0.6 are the missing link between the predominantly compact population of massive quiescent galaxies at high redshift and their analogs and relics in the local volume. The evolution in number density of these extreme objects over cosmic time is the crucial constraining factor for the models of massive galaxy assembly. We select a large sample of ~200 intermediate-redshift massive compacts from the Baryon Oscillation Spectroscopic Survey (BOSS) spectroscopy by identifying point-like Sloan Digital Sky Survey photometric sources with spectroscopic signatures of evolved redshifted galaxies. A subset of our targets have publicly available high-resolution ground-based images that we use to augment the dynamical and stellar population properties of these systems by their structural parameters. We confirm that all BOSS compact candidates are as compact as their high-redshift massive counterparts and less than half the size of similarly massive systems at z ~ 0. We use the completeness-corrected numbers of BOSS compacts to compute lower limits on their number densities in narrow redshift bins spanning the range of our sample. The abundance of extremely dense quiescent galaxies at 0.2 < z < 0.6 is in excellent agreement with the number densities of these systems at high redshift. Our lower limits support the models of massive galaxy assembly through a series of minor mergers over the redshift range 0 < z < 2.

A Physical Model for Three-Phase Compaction in Silicic Magma Reservoirs

NASA Astrophysics Data System (ADS)

Huber, Christian; Parmigiani, Andrea

2018-04-01

We develop a model for phase separation in magma reservoirs containing a mixture of silicate melt, crystals, and fluids (exsolved volatiles). The interplay between the three phases controls the dynamics of phase separation and consequently the chemical and physical evolution of magma reservoirs. The model we propose is based on the two-phase damage theory approach of Bercovici et al. (2001, https://doi.org/10.1029/2000JB900430) and Bercovici and Ricard (2003, https://doi.org/10.1046/j.1365-246X.2003.01854.x) because it offers the leverage of considering interface (in the macroscopic limit) between phases that can deform depending on the mechanical work and phase changes taking place locally in the magma. Damage models also offer the advantage that pressure is defined uniquely to each phase and does not need to be equal among phases, which will enable us to consider, in future studies, the large capillary pressure at which fluids are mobilized in mature, crystal-rich, magma bodies. In this first analysis of three-phase compaction, we solve the three-phase compaction equations numerically for a simple 1-D problem where we focus on the effect of fluids on the efficiency of melt-crystal separation considering the competition between viscous and buoyancy stresses only. We contrast three sets of simulations to explore the behavior of three-phase compaction, a melt-crystal reference compaction scenario (two-phase compaction), a three-phase scenario without phase changes, and finally a three-phase scenario with a parameterized second boiling (crystallization-induced exsolution). The simulations show a dramatic difference between two-phase (melt crystals) and three-phase (melt-crystals-exsolved volatiles) compaction-driven phase separation. We find that the presence of a lighter, significantly less viscous fluid hinders melt-crystal separation.

Blue ellipticals in compact groups

NASA Technical Reports Server (NTRS)

Zepf, Stephen E.; Whitmore, Bradley C.

1990-01-01

By studying galaxies in compact groups, the authors examine the hypothesis that mergers of spiral galaxies make elliptical galaxies. The authors combine dynamical models of the merger-rich compact group environment with stellar evolution models and predict that roughly 15 percent of compact group ellipticals should be 0.15 mag bluer in B - R color than normal ellipticals. The published colors of these galaxies suggest the existence of this predicted blue population, but a normal distribution with large random errors can not be ruled out based on these data alone. However, the authors have new ultraviolet blue visual data which confirm the blue color of the two ellipticals with blue B - R colors for which they have their own colors. This confirmation of a population of blue ellipticals indicates that interactions are occurring in compact groups, but a blue color in one index alone does not require that these ellipticals are recent products of the merger of two spirals. The authors demonstrate how optical spectroscopy in the blue may distinguish between a true spiral + spiral merger and the swallowing of a gas-rich system by an already formed elliptical. The authors also show that the sum of the luminosity of the galaxies in each group is consistent with the hypothesis that the final stage in the evolution of compact group is an elliptical galaxy.

Dynamic Behavior of Engineered Lattice Materials

PubMed Central

Hawreliak, J. A.; Lind, J.; Maddox, B.; Barham, M.; Messner, M.; Barton, N.; Jensen, B. J.; Kumar, M.

2016-01-01

Additive manufacturing (AM) is enabling the fabrication of materials with engineered lattice structures at the micron scale. These mesoscopic structures fall between the length scale associated with the organization of atoms and the scale at which macroscopic structures are constructed. Dynamic compression experiments were performed to study the emergence of behavior owing to the lattice periodicity in AM materials on length scales that approach a single unit cell. For the lattice structures, both bend and stretch dominated, elastic deflection of the structure was observed ahead of the compaction of the lattice, while no elastic deformation was observed to precede the compaction in a stochastic, random structure. The material showed lattice characteristics in the elastic response of the material, while the compaction was consistent with a model for compression of porous media. The experimental observations made on arrays of 4 × 4 × 6 lattice unit cells show excellent agreement with elastic wave velocity calculations for an infinite periodic lattice, as determined by Bloch wave analysis, and finite element simulations. PMID:27321697

Sintering of polydisperse viscous droplets

NASA Astrophysics Data System (ADS)

Wadsworth, Fabian B.; Vasseur, Jérémie; Llewellin, Edward W.; Dingwell, Donald B.

2017-03-01

Sintering—or coalescence—of compacts of viscous droplets is driven by the interfacial tension between the droplets and the interstitial gas phase. The process, which occurs in a range of industrial and natural settings, such as the manufacture of ceramics and the welding of volcanic ash, causes the compact to densify, to become stronger, and to become less permeable. We investigate the role of droplet polydispersivity in sintering dynamics by conducting experiments in which populations of glass spheres with different size distributions are heated to temperatures above the glass transition interval. We quantify the progress of sintering by tracking changes in porosity with time. The sintering dynamics is modeled by treating the system as a random distribution of interstitial gas bubbles shrinking under the action of interfacial tension only. We identify the scaling between the polydispersivity of the initial droplets and the dynamics of bulk densification. The framework that we develop allows the sintering dynamics of arbitrary polydisperse populations of droplets to be predicted if the initial droplet (or particle) size distribution is known.

Prediction of flow dynamics using point processes

NASA Astrophysics Data System (ADS)

Hirata, Yoshito; Stemler, Thomas; Eroglu, Deniz; Marwan, Norbert

2018-01-01

Describing a time series parsimoniously is the first step to study the underlying dynamics. For a time-discrete system, a generating partition provides a compact description such that a time series and a symbolic sequence are one-to-one. But, for a time-continuous system, such a compact description does not have a solid basis. Here, we propose to describe a time-continuous time series using a local cross section and the times when the orbit crosses the local cross section. We show that if such a series of crossing times and some past observations are given, we can predict the system's dynamics with fine accuracy. This reconstructability neither depends strongly on the size nor the placement of the local cross section if we have a sufficiently long database. We demonstrate the proposed method using the Lorenz model as well as the actual measurement of wind speed.

Dynamics modelling and Hybrid Suppression Control of space robots performing cooperative object manipulation

NASA Astrophysics Data System (ADS)

Zarafshan, P.; Moosavian, S. Ali A.

2013-10-01

Dynamics modelling and control of multi-body space robotic systems composed of rigid and flexible elements is elaborated here. Control of such systems is highly complicated due to severe under-actuated condition caused by flexible elements, and an inherent uneven nonlinear dynamics. Therefore, developing a compact dynamics model with the requirement of limited computations is extremely useful for controller design, also to develop simulation studies in support of design improvement, and finally for practical implementations. In this paper, the Rigid-Flexible Interactive dynamics Modelling (RFIM) approach is introduced as a combination of Lagrange and Newton-Euler methods, in which the motion equations of rigid and flexible members are separately developed in an explicit closed form. These equations are then assembled and solved simultaneously at each time step by considering the mutual interaction and constraint forces. The proposed approach yields a compact model rather than common accumulation approach that leads to a massive set of equations in which the dynamics of flexible elements is united with the dynamics equations of rigid members. To reveal such merits of this new approach, a Hybrid Suppression Control (HSC) for a cooperative object manipulation task will be proposed, and applied to usual space systems. A Wheeled Mobile Robotic (WMR) system with flexible appendages as a typical space rover is considered which contains a rigid main body equipped with two manipulating arms and two flexible solar panels, and next a Space Free Flying Robotic system (SFFR) with flexible members is studied. Modelling verification of these complicated systems is vigorously performed using ANSYS and ADAMS programs, while the limited computations of RFIM approach provides an efficient tool for the proposed controller design. Furthermore, it will be shown that the vibrations of the flexible solar panels results in disturbing forces on the base which may produce undesirable errors and perturb the object manipulation task. So, it is shown that these effects can be significantly eliminated by the proposed Hybrid Suppression Control algorithm.

Uncertain dynamical systems: A differential game approach

NASA Technical Reports Server (NTRS)

Gutman, S.

1976-01-01

A class of dynamical systems in a conflict situation is formulated and discussed, and the formulation is applied to the study of an important class of systems in the presence of uncertainty. The uncertainty is deterministic and the only assumption is that its value belongs to a known compact set. Asymptotic stability is fully discussed with application to variable structure and model reference control systems.

Compact structure and non-Gaussian dynamics of ring polymer melts.

PubMed

Brás, Ana R; Goossen, Sebastian; Krutyeva, Margarita; Radulescu, Aurel; Farago, Bela; Allgaier, Jürgen; Pyckhout-Hintzen, Wim; Wischnewski, Andreas; Richter, Dieter

2014-05-28

We present a neutron scattering analysis of the structure and dynamics of PEO polymer rings with a molecular weight 2.5 times higher than the entanglement mass. The melt structure was found to be more compact than a Gaussian model would suggest. With increasing time the center of mass (c.o.m.) diffusion undergoes a transition from sub-diffusive to diffusive behavior. The transition time agrees well with the decorrelation time predicted by a mode coupling approach. As a novel feature well pronounced non-Gaussian behavior of the c.o.m. diffusion was found that shows surprising analogies to the cage effect known from glassy systems. Finally, the longest wavelength Rouse modes are suppressed possibly as a consequence of an onset of lattice animal features as hypothesized in theoretical approaches.

Analysis of laboratory compaction methods of roller compacted concrete

NASA Astrophysics Data System (ADS)

Trtík, Tomáš; Chylík, Roman; Bílý, Petr; Fládr, Josef

2017-09-01

Roller-Compacted Concrete (RCC) is an ordinary concrete poured and compacted with machines typically used for laying of asphalt road layers. One of the problems connected with this technology is preparation of representative samples in the laboratory. The aim of this work was to analyse two methods of preparation of RCC laboratory samples with bulk density as the comparative parameter. The first method used dynamic compaction by pneumatic hammer. The second method of compaction had a static character. The specimens were loaded by precisely defined force in laboratory loading machine to create the same conditions as during static rolling (in the Czech Republic, only static rolling is commonly used). Bulk densities obtained by the two compaction methods were compared with core drills extracted from real RCC structure. The results have shown that the samples produced by pneumatic hammer tend to overestimate the bulk density of the material. For both compaction methods, immediate bearing index test was performed to verify the quality of compaction. A fundamental difference between static and dynamic compaction was identified. In static compaction, initial resistance to penetration of the mandrel was higher, after exceeding certain limit the resistance was constant. This means that the samples were well compacted just on the surface. Specimens made by pneumatic hammer actively resisted throughout the test, the whole volume was uniformly compacted.

Constitutive model for porous materials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weston, A.M.; Lee, E.L.

1982-01-01

A simple pressure versus porosity compaction model is developed to calculate the response of granular porous bed materials to shock impact. The model provides a scheme for calculating compaction behavior when relatively limited material data are available. While the model was developed to study porous explosives and propellants, it has been applied to a much wider range of materials. The early development of porous material models, such as that of Hermann, required empirical dynamic compaction data. Erkman and Edwards successfully applied the early theory to unreacted porous high explosives using a Gruneisen equation of state without yield behavior and withoutmore » trapped gas in the pores. Butcher included viscoelastic rate dependance in pore collapse. The theoretical treatment of Carroll and Holt is centered on the collapse of a circular pore and includes radial inertia terms and a complex set of stress, strain and strain rate constitutive parameters. Unfortunately data required for these parameters are generally not available. The model described here is also centered on the collapse of a circular pore, but utilizes a simpler elastic-plastic static equilibrium pore collapse mechanism without strain rate dependence, or radial inertia terms. It does include trapped gas inside the pore, a solid material flow stress that creates both a yield point and a variation in solid material pressure with radius. The solid is described by a Mie-Gruneisen type EOS. Comparisons show that this model will accurately estimate major mechanical features which have been observed in compaction experiments.« less

How much land for your sand: effects of vegetation and compaction on crevasse splay formation

NASA Astrophysics Data System (ADS)

Nienhuis, J.; Tornqvist, T. E.; Esposito, C. R.

2016-12-01

Crevasse splays, failed avulsions that make up a significant portion of fluvio-deltaic overbank architecture in the Mississippi River Delta, are a natural analog for sediment diversions that are being planned to rebuild or sustain coastal wetlands. Here we use Delft3D to study the rates and mechanisms of crevasse splay growth. Because crevasse splays often form in peat-rich and vegetated environments, we have modified Delft3D to include simple formulations for the dynamic interaction between morphodynamics, vegetation, and soil compaction. Detailed stratigraphic data from prehistoric splays in the Mississippi River Delta provide useful constraints on long-term compaction rates, sedimentology, and splay volumes. We find that compaction and the absence of vegetation increase the lifespan of crevasse splays, sometimes from 900 to 4000 flood days (days during which the crevasse is geomorphically active, equivalent to model days in our simulations). Additionally, we find that in a few tested scenarios vegetation primarily acts to increase channel depths and flush out fine-grained sediment towards the flood-basin, decreasing the bulk mud capture efficiency of the splay. One model experiment with moderate vegetation heights and low susceptibility for soil compaction was a particularly "efficient" sediment diversion: every 1 m3 of imported sediment resulted in 2.55 m2 of new land.

Mitotic chromosome compaction via active loop extrusion

NASA Astrophysics Data System (ADS)

Goloborodko, Anton; Imakaev, Maxim; Marko, John; Mirny, Leonid; MIT-Northwestern Team

During cell division, two copies of each chromosome are segregated from each other and compacted more than hundred-fold into the canonical X-shaped structures. According to earlier microscopic observations and the recent Hi-C study, chromosomes are compacted into arrays of consecutive loops of ~100 kilobases. Mechanisms that lead to formation of such loop arrays are largely unknown. Here we propose that, during cell division, chromosomes can be compacted by enzymes that extrude loops on chromatin fibers. First, we use computer simulations and analytical modeling to show that a system of loop-extruding enzymes on a chromatin fiber self-organizes into an array of consecutive dynamic loops. Second, we model the process of loop extrusion in 3D and show that, coupled with the topo II strand-passing activity, it leads to robust compaction and segregation of sister chromatids. This mechanism of chromosomal condensation and segregation does not require additional proteins or specific DNA markup and is robust against variations in the number and properties of such loop extruding enzymes. Work at NU was supported by the NSF through Grants DMR-1206868 and MCB-1022117, and by the NIH through Grants GM105847 and CA193419. Work at MIT was supported by the NIH through Grants GM114190 R01HG003143.

Acoustic response of cemented granular sedimentary rocks: molecular dynamics modeling.

PubMed

García, Xavier; Medina, Ernesto

2007-06-01

The effect of cementation processes on the acoustical properties of sands is studied via molecular dynamics simulation methods. We propose numerical methods where the initial uncemented sand is built by simulating the settling process of sediments. Uncemented samples of different porosity are considered by emulating natural mechanical compaction of sediments due to overburden. Cementation is considered through a particle-based model that captures the underlying physics behind the process. In our simulations, we consider samples with different degrees of compaction and cementing materials with distinct elastic properties. The microstructure of cemented sands is taken into account while adding cement at specific locations within the pores, such as grain-to-grain contacts. Results show that the acoustical properties of cemented sands are strongly dependent on the amount of cement, its stiffness relative to the hosting medium, and its location within the pores. Simulation results are in good correspondence with available experimental data and compare favorably with some theoretical predictions for the sound velocity within a range of cement saturation, porosity, and confining pressure.

Condensins exert force on chromatin-nuclear envelope tethers to mediate nucleoplasmic reticulum formation in Drosophila melanogaster.

PubMed

Bozler, Julianna; Nguyen, Huy Q; Rogers, Gregory C; Bosco, Giovanni

2014-12-30

Although the nuclear envelope is known primarily for its role as a boundary between the nucleus and cytoplasm in eukaryotes, it plays a vital and dynamic role in many cellular processes. Studies of nuclear structure have revealed tissue-specific changes in nuclear envelope architecture, suggesting that its three-dimensional structure contributes to its functionality. Despite the importance of the nuclear envelope, the factors that regulate and maintain nuclear envelope shape remain largely unexplored. The nuclear envelope makes extensive and dynamic interactions with the underlying chromatin. Given this inexorable link between chromatin and the nuclear envelope, it is possible that local and global chromatin organization reciprocally impact nuclear envelope form and function. In this study, we use Drosophila salivary glands to show that the three-dimensional structure of the nuclear envelope can be altered with condensin II-mediated chromatin condensation. Both naturally occurring and engineered chromatin-envelope interactions are sufficient to allow chromatin compaction forces to drive distortions of the nuclear envelope. Weakening of the nuclear lamina further enhanced envelope remodeling, suggesting that envelope structure is capable of counterbalancing chromatin compaction forces. Our experiments reveal that the nucleoplasmic reticulum is born of the nuclear envelope and remains dynamic in that they can be reabsorbed into the nuclear envelope. We propose a model where inner nuclear envelope-chromatin tethers allow interphase chromosome movements to change nuclear envelope morphology. Therefore, interphase chromatin compaction may be a normal mechanism that reorganizes nuclear architecture, while under pathological conditions, such as laminopathies, compaction forces may contribute to defects in nuclear morphology. Copyright © 2015 Bozler et al.

Condensins Exert Force on Chromatin-Nuclear Envelope Tethers to Mediate Nucleoplasmic Reticulum Formation in Drosophila melanogaster

PubMed Central

Bozler, Julianna; Nguyen, Huy Q.; Rogers, Gregory C.; Bosco, Giovanni

2014-01-01

Although the nuclear envelope is known primarily for its role as a boundary between the nucleus and cytoplasm in eukaryotes, it plays a vital and dynamic role in many cellular processes. Studies of nuclear structure have revealed tissue-specific changes in nuclear envelope architecture, suggesting that its three-dimensional structure contributes to its functionality. Despite the importance of the nuclear envelope, the factors that regulate and maintain nuclear envelope shape remain largely unexplored. The nuclear envelope makes extensive and dynamic interactions with the underlying chromatin. Given this inexorable link between chromatin and the nuclear envelope, it is possible that local and global chromatin organization reciprocally impact nuclear envelope form and function. In this study, we use Drosophila salivary glands to show that the three-dimensional structure of the nuclear envelope can be altered with condensin II-mediated chromatin condensation. Both naturally occurring and engineered chromatin-envelope interactions are sufficient to allow chromatin compaction forces to drive distortions of the nuclear envelope. Weakening of the nuclear lamina further enhanced envelope remodeling, suggesting that envelope structure is capable of counterbalancing chromatin compaction forces. Our experiments reveal that the nucleoplasmic reticulum is born of the nuclear envelope and remains dynamic in that they can be reabsorbed into the nuclear envelope. We propose a model where inner nuclear envelope-chromatin tethers allow interphase chromosome movements to change nuclear envelope morphology. Therefore, interphase chromatin compaction may be a normal mechanism that reorganizes nuclear architecture, while under pathological conditions, such as laminopathies, compaction forces may contribute to defects in nuclear morphology. PMID:25552604

Static and Dynamic Compaction of CL-20 Powders

NASA Astrophysics Data System (ADS)

Cooper, Marcia; Brundage, Aaron; Dudley, Evan

2009-06-01

Hexanitrohexaazaisowurtzitane (CL-20) powders were compacted under quasi-static and dynamic loading conditions. A uniaxial compression apparatus quasi-statically compressed the powders to 90% theoretical maximum density with applied stresses up to 0.5 GPa. Dynamic compaction measurements using low-density pressings (62-70% theoretical maximum density) were obtained in a single-stage gas gun at impact velocities between 0.17-0.70 km/s. Experiments were conducted in a reverse ballistic arrangement in which the CL-20 ladened projectile impacted a target consisting of an aluminized window. VISAR-measured particle velocities at the explosive-window interface determined the shock Hugoniot states for pressures up to 0.9 GPa. The powder compaction behavior is found to be stiffer under dynamic loading than under quasi-static loading. Additional gas gun tests were conducted in which the low-density CL-20 pressings were confined within a target cup by the aluminized window. This arrangement enabled temporal measurement of the transmitted wave profiles in which elastic wave precursors were observed.

Predicting the shock compression response of heterogeneous powder mixtures

NASA Astrophysics Data System (ADS)

Fredenburg, D. A.; Thadhani, N. N.

2013-06-01

A model framework for predicting the dynamic shock-compression response of heterogeneous powder mixtures using readily obtained measurements from quasi-static tests is presented. Low-strain-rate compression data are first analyzed to determine the region of the bulk response over which particle rearrangement does not contribute to compaction. This region is then fit to determine the densification modulus of the mixture, σD, an newly defined parameter describing the resistance of the mixture to yielding. The measured densification modulus, reflective of the diverse yielding phenomena that occur at the meso-scale, is implemented into a rate-independent formulation of the P-α model, which is combined with an isobaric equation of state to predict the low and high stress dynamic compression response of heterogeneous powder mixtures. The framework is applied to two metal + metal-oxide (thermite) powder mixtures, and good agreement between the model and experiment is obtained for all mixtures at stresses near and above those required to reach full density. At lower stresses, rate-dependencies of the constituents, and specifically those of the matrix constituent, determine the ability of the model to predict the measured response in the incomplete compaction regime.

Neutron star mergers as a probe of modifications of general relativity with finite-range scalar forces

NASA Astrophysics Data System (ADS)

Sagunski, Laura; Zhang, Jun; Johnson, Matthew C.; Lehner, Luis; Sakellariadou, Mairi; Liebling, Steven L.; Palenzuela, Carlos; Neilsen, David

2018-03-01

Observations of gravitational radiation from compact binary systems provide an unprecedented opportunity to test general relativity in the strong field dynamical regime. In this paper, we investigate how future observations of gravitational radiation from binary neutron star mergers might provide constraints on finite-range forces from a universally coupled massive scalar field. Such scalar degrees of freedom (d.o.f.) are a characteristic feature of many extensions of general relativity. For concreteness, we work in the context of metric f (R ) gravity, which is equivalent to general relativity and a universally coupled scalar field with a nonlinear potential whose form is fixed by the choice of f (R ). In theories where neutron stars (or other compact objects) obtain a significant scalar charge, the resulting attractive finite-range scalar force has implications for both the inspiral and merger phases of binary systems. We first present an analysis of the inspiral dynamics in Newtonian limit, and forecast the constraints on the mass of the scalar and charge of the compact objects for the Advanced LIGO gravitational wave observatory. We then perform a comparative study of binary neutron star mergers in general relativity with those of a one-parameter model of f (R ) gravity using fully relativistic hydrodynamical simulations. These simulations elucidate the effects of the scalar on the merger and postmerger dynamics. We comment on the utility of the full waveform (inspiral, merger, postmerger) to probe different regions of parameter space for both the particular model of f (R ) gravity studied here and for finite-range scalar forces more generally.

Fast Algorithms for Mining Co-evolving Time Series

DTIC Science & Technology

2011-09-01

Keogh et al., 2001, 2004] and (b) forecasting, like an autoregressive integrated moving average model ( ARIMA ) and related meth- ods [Box et al., 1994...computing hardware? We develop models to mine time series with missing values, to extract compact representation from time sequences, to segment the...sequences, and to do forecasting. For large scale data, we propose algorithms for learning time series models , in particular, including Linear Dynamical

Antarctic Firn Compaction Rates from Repeat-Track Airborne Radar Data: I. Methods

NASA Technical Reports Server (NTRS)

Medley, B.; Ligtenberg, S. R. M.; Joughin, I.; Van Den Broeke, M. R.; Gogineni, S.; Nowicki, S.

2015-01-01

While measurements of ice-sheet surface elevation change are increasingly used to assess mass change, the processes that control the elevation fluctuations not related to ice-flow dynamics (e.g. firn compaction and accumulation) remain difficult to measure. Here we use radar data from the Thwaites Glacier (West Antarctica) catchment to measure the rate of thickness change between horizons of constant age over different time intervals: 2009-10, 2010-11 and 2009-11. The average compaction rate to approximately 25m depth is 0.33ma(exp -1), with largest compaction rates near the surface. Our measurements indicate that the accumulation rate controls much of the spatio-temporal variations in the compaction rate while the role of temperature is unclear due to a lack of measurements. Based on a semi-empirical, steady-state densification model, we find that surveying older firn horizons minimizes the potential bias resulting from the variable depth of the constant age horizon. Our results suggest that the spatiotemporal variations in the firn compaction rate are an important consideration when converting surface elevation change to ice mass change. Compaction rates varied by up to 0.12ma(exp -1) over distances less than 6km and were on average greater than 20% larger during the 2010-11 interval than during 2009-10.

Oscillatory ductile compaction dynamics in a cylinder

NASA Astrophysics Data System (ADS)

Uri, Lina; Dysthe, Dag Kristian; Feder, Jens

2006-09-01

Ductile compaction is common in many natural systems, but the temporal evolution of such systems is rarely studied. We observe surprising oscillations in the weight measured at the bottom of a self-compacting ensemble of ductile grains. The oscillations develop during the first ten hours of the experiment, and usually persist through the length of an experiment (one week). The weight oscillations are connected to the grain-wall contacts, and are directly correlated with the observed strain evolution and the dynamics of grain-wall contacts during the compaction. Here, we present the experimental results and characteristic time constants of the system, and discuss possible reasons for the measured weight oscillations.

Oscillatory ductile compaction dynamics in a cylinder.

PubMed

Uri, Lina; Dysthe, Dag Kristian; Feder, Jens

2006-09-01

Ductile compaction is common in many natural systems, but the temporal evolution of such systems is rarely studied. We observe surprising oscillations in the weight measured at the bottom of a self-compacting ensemble of ductile grains. The oscillations develop during the first ten hours of the experiment, and usually persist through the length of an experiment (one week). The weight oscillations are connected to the grain-wall contacts, and are directly correlated with the observed strain evolution and the dynamics of grain-wall contacts during the compaction. Here, we present the experimental results and characteristic time constants of the system, and discuss possible reasons for the measured weight oscillations.

Compaction of granular materials composed of deformable particles

NASA Astrophysics Data System (ADS)

Nguyen, Thanh Hai; Nezamabadi, Saeid; Delenne, Jean-Yves; Radjai, Farhang

2017-06-01

In soft particle materials such as metallic powders the particles can undergo large deformations without rupture. The large elastic or plastic deformations of the particles are expected to strongly affect the mechanical properties of these materials compared to hard particle materials more often considered in research on granular materials. Herein, two numerical approaches are proposed for the simulation of soft granular systems: (i) an implicit formulation of the Material Point Method (MPM) combined with the Contact Dynamics (CD) method to deal with contact interactions, and (i) Bonded Particle Model (BPM), in which each deformable particle is modeled as an aggregate of rigid primary particles using the CD method. These two approaches allow us to simulate the compaction of an assembly of elastic or plastic particles. By analyzing the uniaxial compaction of 2D soft particle packings, we investigate the effects of particle shape change on the stress-strain relationship and volume change behavior as well as the evolution of the microstructure.

Transistor analogs of emergent iono-neuronal dynamics.

PubMed

Rachmuth, Guy; Poon, Chi-Sang

2008-06-01

Neuromorphic analog metal-oxide-silicon (MOS) transistor circuits promise compact, low-power, and high-speed emulations of iono-neuronal dynamics orders-of-magnitude faster than digital simulation. However, their inherently limited input voltage dynamic range vs power consumption and silicon die area tradeoffs makes them highly sensitive to transistor mismatch due to fabrication inaccuracy, device noise, and other nonidealities. This limitation precludes robust analog very-large-scale-integration (aVLSI) circuits implementation of emergent iono-neuronal dynamics computations beyond simple spiking with limited ion channel dynamics. Here we present versatile neuromorphic analog building-block circuits that afford near-maximum voltage dynamic range operating within the low-power MOS transistor weak-inversion regime which is ideal for aVLSI implementation or implantable biomimetic device applications. The fabricated microchip allowed robust realization of dynamic iono-neuronal computations such as coincidence detection of presynaptic spikes or pre- and postsynaptic activities. As a critical performance benchmark, the high-speed and highly interactive iono-neuronal simulation capability on-chip enabled our prompt discovery of a minimal model of chaotic pacemaker bursting, an emergent iono-neuronal behavior of fundamental biological significance which has hitherto defied experimental testing or computational exploration via conventional digital or analog simulations. These compact and power-efficient transistor analogs of emergent iono-neuronal dynamics open new avenues for next-generation neuromorphic, neuroprosthetic, and brain-machine interface applications.

Comparison of Homogeneous and Heterogeneous CFD Fuel Models for Phase I of the IAEA CRP on HTR Uncertainties Benchmark

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gerhard Strydom; Su-Jong Yoon

2014-04-01

Computational Fluid Dynamics (CFD) evaluation of homogeneous and heterogeneous fuel models was performed as part of the Phase I calculations of the International Atomic Energy Agency (IAEA) Coordinate Research Program (CRP) on High Temperature Reactor (HTR) Uncertainties in Modeling (UAM). This study was focused on the nominal localized stand-alone fuel thermal response, as defined in Ex. I-3 and I-4 of the HTR UAM. The aim of the stand-alone thermal unit-cell simulation is to isolate the effect of material and boundary input uncertainties on a very simplified problem, before propagation of these uncertainties are performed in subsequent coupled neutronics/thermal fluids phasesmore » on the benchmark. In many of the previous studies for high temperature gas cooled reactors, the volume-averaged homogeneous mixture model of a single fuel compact has been applied. In the homogeneous model, the Tristructural Isotropic (TRISO) fuel particles in the fuel compact were not modeled directly and an effective thermal conductivity was employed for the thermo-physical properties of the fuel compact. On the contrary, in the heterogeneous model, the uranium carbide (UCO), inner and outer pyrolytic carbon (IPyC/OPyC) and silicon carbide (SiC) layers of the TRISO fuel particles are explicitly modeled. The fuel compact is modeled as a heterogeneous mixture of TRISO fuel kernels embedded in H-451 matrix graphite. In this study, a steady-state and transient CFD simulations were performed with both homogeneous and heterogeneous models to compare the thermal characteristics. The nominal values of the input parameters are used for this CFD analysis. In a future study, the effects of input uncertainties in the material properties and boundary parameters will be investigated and reported.« less

Investigation of hydraulic transmission noise sources

NASA Astrophysics Data System (ADS)

Klop, Richard J.

Advanced hydrostatic transmissions and hydraulic hybrids show potential in new market segments such as commercial vehicles and passenger cars. Such new applications regard low noise generation as a high priority, thus, demanding new quiet hydrostatic transmission designs. In this thesis, the aim is to investigate noise sources of hydrostatic transmissions to discover strategies for designing compact and quiet solutions. A model has been developed to capture the interaction of a pump and motor working in a hydrostatic transmission and to predict overall noise sources. This model allows a designer to compare noise sources for various configurations and to design compact and inherently quiet solutions. The model describes dynamics of the system by coupling lumped parameter pump and motor models with a one-dimensional unsteady compressible transmission line model. The model has been verified with dynamic pressure measurements in the line over a wide operating range for several system structures. Simulation studies were performed illustrating sensitivities of several design variables and the potential of the model to design transmissions with minimal noise sources. A semi-anechoic chamber has been designed and constructed suitable for sound intensity measurements that can be used to derive sound power. Measurements proved the potential to reduce audible noise by predicting and reducing both noise sources. Sound power measurements were conducted on a series hybrid transmission test bench to validate the model and compare predicted noise sources with sound power.

Granular compaction by fluidization

NASA Astrophysics Data System (ADS)

Tariot, Alexis; Gauthier, Georges; Gondret, Philippe

2017-06-01

How to arrange a packing of spheres is a scientific question that aroused many fundamental works since a long time from Kepler's conjecture to Edward's theory (S. F. Edwards and R.B.S Oakeshott. Theory of powders. Physica A, 157: 1080-1090, 1989), where the role traditionally played by the energy in statistical problems is replaced by the volume for athermal grains. We present experimental results on the compaction of a granular pile immersed in a viscous fluid when submited to a continuous or bursting upward flow. An initial fluidized bed leads to a well reproduced initial loose packing by the settling of grains when the high enough continuous upward flow is turned off. When the upward flow is then turned on again, we record the dynamical evolution of the bed packing. For a low enough continuous upward flow, below the critical velocity of fluidization, a slow compaction dynamics is observed. Strikingly, a slow compaction can be also observed in the case of "fluidization taps" with bursts of fluid velocity higher than the critical fluidization velocity. The different compaction dynamics is discussed when varying the different control parameters of these "fluidization taps".

Information, Consistent Estimation and Dynamic System Identification.

DTIC Science & Technology

1976-11-01

Washington,DC 232129 Tj-CUOSITORING AGENCY NAMIE 6 AOORESS(lI dittevmet Itroo CuooottaaII Offics) IS.- SECURITY CLASS. (of this *.part) SCHEDULE ’B...representative model from a given model set, applicable to infinite and even non-compact model sets. S-UNCLASSIFIED SECURITY CLASSIFICATION OF THIS PAOrj(*whe...ergodicity. For a thorough development of ergodic theory the reader is referred to, e.g., Doob [1953], Halmos [1956] and Chacon and Ornstein [1959

Coevolution of Glauber-like Ising dynamics and topology

NASA Astrophysics Data System (ADS)

Mandrà, Salvatore; Fortunato, Santo; Castellano, Claudio

2009-11-01

We study the coevolution of a generalized Glauber dynamics for Ising spins with tunable threshold and of the graph topology where the dynamics takes place. This simple coevolution dynamics generates a rich phase diagram in the space of the two parameters of the model, the threshold and the rewiring probability. The diagram displays phase transitions of different types: spin ordering, percolation, and connectedness. At variance with traditional coevolution models, in which all spins of each connected component of the graph have equal value in the stationary state, we find that, for suitable choices of the parameters, the system may converge to a state in which spins of opposite sign coexist in the same component organized in compact clusters of like-signed spins. Mean field calculations enable one to estimate some features of the phase diagram.

Star-forming galaxies in intermediate-redshift clusters: stellar versus dynamical masses of luminous compact blue galaxies

NASA Astrophysics Data System (ADS)

Randriamampandry, S. M.; Crawford, S. M.; Bershady, M. A.; Wirth, G. D.; Cress, C. M.

2017-10-01

We investigate the stellar masses of the class of star-forming objects known as luminous compact blue galaxies (LCBGs) by studying a sample of galaxies in the distant cluster MS 0451.6-0305 at z ≈ 0.54 with ground-based multicolour imaging and spectroscopy. For a sample of 16 spectroscopically confirmed cluster LCBGs (colour B - V < 0.5, surface brightness μB < 21 mag arcsec-2 and magnitude MB < -18.5), we measure stellar masses by fitting spectral energy distribution (SED) models to multiband photometry, and compare with dynamical masses [determined from velocity dispersion in the range 10 < σv(km s- 1) < 80] we previously obtained from their emission-line spectra. We compare two different stellar population models that measure stellar mass in star-bursting galaxies, indicating correlations between the stellar age, extinction and stellar mass derived from the two different SED models. The stellar masses of cluster LCBGs are distributed similarly to those of field LCBGs, but the cluster LCBGs show lower dynamical-to-stellar mass ratios (Mdyn/M⋆ = 2.6) than their field LCBG counterparts (Mdyn/M⋆ = 4.8), echoing trends noted previously in low-redshift dwarf elliptical galaxies. Within this limited sample, the specific star formation rate declines steeply with increasing mass, suggesting that these cluster LCBGs have undergone vigorous star formation.

Validation of a RANS transition model using a high-order weighted compact nonlinear scheme

NASA Astrophysics Data System (ADS)

Tu, GuoHua; Deng, XiaoGang; Mao, MeiLiang

2013-04-01

A modified transition model is given based on the shear stress transport (SST) turbulence model and an intermittency transport equation. The energy gradient term in the original model is replaced by flow strain rate to saving computational costs. The model employs local variables only, and then it can be conveniently implemented in modern computational fluid dynamics codes. The fifth-order weighted compact nonlinear scheme and the fourth-order staggered scheme are applied to discrete the governing equations for the purpose of minimizing discretization errors, so as to mitigate the confusion between numerical errors and transition model errors. The high-order package is compared with a second-order TVD method on simulating the transitional flow of a flat plate. Numerical results indicate that the high-order package give better grid convergence property than that of the second-order method. Validation of the transition model is performed for transitional flows ranging from low speed to hypersonic speed.

Freeze-Thaw Cycles Effects on Soil Compaction in a Clay Loam

NASA Astrophysics Data System (ADS)

Jabro, J.; Evans, R.; Iversen, W.

2012-04-01

Inappropriate soil management practices and heavier farm machinery and equipment have led to an increase in soil compaction in the last two decades prompting increased global concern regarding the impact of soil compaction on crop production and soil quality in modern mechanized agriculture. A 3-yr comprehensive study was established to evaluate the dynamic of freeze-thaw cycles on soil compaction in a clay loam soil. Plots of frozen soils were compared with plots where soils were prevented from freezing with electrically heated blankets commonly used on concrete. Results showed that frequent freeze-thaw cycles over the winter alleviated a majority of soil compaction at the 0 - 20 cm depth. Soil penetration resistance in compacted soils was reduced by 73 and 68% over the winter at the 0 - 10 and 10 - 20 cm depths, respectively, due to dynamic effects of freeze-thaw cycles on soil structure and particles configuration. In unfrozen compacted soils, the penetration resistance was also reduced by 50 and 60% over winter at the 0 - 10 and 10 - 20 cm depths, respectively, due to the biology of soil, microbial activity, and disruptive effects of shrink-swell cycles. These results have demonstrated of how repeated freeze-thaw cycles can alleviate soil compaction, alter soil physical quality and create optimal soil conditions required for profitable growth of agricultural crops. The results from this study will save growers considerable time, money and energy currently required to alleviate soil compaction using other methods such as sub-soiling and deep tillage. We believe that Mother Nature provides ways to reverse soil compaction and improve soil structure and aggregation through the dynamic of freeze-thaw cycles that soils in Montana and other parts of the country go through each year. We concluded that the Mother Nature is the most effective and cheapest way to alleviate soil compaction.

Compact stochastic models for multidimensional quasiballistic thermal transport

NASA Astrophysics Data System (ADS)

Vermeersch, Bjorn

2016-11-01

The Boltzmann transport equation (BTE) has proven indispensable in elucidating quasiballistic heat dynamics. The experimental observations of nondiffusive thermal transients, however, are interpreted almost exclusively through purely diffusive formalisms that merely extract "effective" Fourier conductivities. Here, we build upon stochastic transport theory to provide a characterisation framework that blends the rich physics contained within the BTE solutions with the convenience of conventional analyses. The multidimensional phonon dynamics are described in terms of an isotropic Poissonian flight process with a rigorous Fourier-Laplace single pulse response P (ξ → ,s )=1 /[s +ψ(∥ ξ → ∥ )] . The spatial propagator ψ(∥ ξ → ∥ ) , unlike commonly reconstructed mean free path spectra κΣ(Λ) , serves as a genuine thermal blueprint of the medium that can be identified in a compact form directly from the raw measurement signals. Practical illustrations for transient thermal grating and time domain thermoreflectance experiments on respectively GaAs and InGaAs are provided.

Melt infiltration of silicon carbide compacts. I - Study of infiltration dynamics

NASA Technical Reports Server (NTRS)

Asthana, Rajiv; Rohatgi, Pradeep K.

1992-01-01

Countergravity, pressure-assisted infiltration with a 2014 Al alloy of suitably tamped porous compacts of platelet shaped single crystals of alpha (hexagonal) silicon carbide was used to measure particulate wettability and infiltration kinetics under dynamic conditions relevant to pressure casting of composites. A threshold pressure P(th) for ingression of the infiltrant was identified based on the experimental penetration length versus pressure profiles for a range of experimental variables which included infiltration pressure, infiltration time, SiC size and SiC surface chemistry. The results showed that P(th) decreased whereas the penetration length increased with increasing SiC size and infiltration time. Cu-coated SiC led to lower P(th) and larger penetration lengths compared to uncoated SiC under identical conditions. These observations have been discussed in the light of theoretical models of infiltration and the kinetics of wetting.

Effect of target-fixture geometry on shock-wave compacted copper powders

NASA Astrophysics Data System (ADS)

Kim, Wooyeol; Ahn, Dong-Hyun; Yoon, Jae Ik; Park, Lee Ju; Kim, Hyoung Seop

2018-01-01

In shock compaction with a single gas gun system, a target fixture is used to safely recover a powder compact processed by shock-wave dynamic impact. However, no standard fixture geometry exists, and its effect on the processed compact is not well studied. In this study, two types of fixture are used for the dynamic compaction of hydrogen-reduced copper powders, and the mechanical properties and microstructures are investigated using the Vickers microhardness test and electron backscatter diffraction, respectively. With the assistance of finite element method simulations, we analyze several shock parameters that are experimentally hard to control. The results of the simulations indicate that the target geometry clearly affects the characteristics of incident and reflected shock waves. The hardness distribution and the microstructure of the compacts also show their dependence on the geometry. With the results of the simulations and the experiment, it is concluded that the target geometry affects the shock wave propagation and wave interaction in the specimen.

TIGER: A data analysis pipeline for testing the strong-field dynamics of general relativity with gravitational wave signals from coalescing compact binaries

NASA Astrophysics Data System (ADS)

Agathos, M.; Del Pozzo, W.; Li, T. G. F.; Van Den Broeck, C.; Veitch, J.; Vitale, S.

2014-04-01

The direct detection of gravitational waves with upcoming second-generation gravitational wave observatories such as Advanced LIGO and Advanced Virgo will allow us to probe the genuinely strong-field dynamics of general relativity (GR) for the first time. We have developed a data analysis pipeline called TIGER (test infrastructure for general relativity), which uses signals from compact binary coalescences to perform a model-independent test of GR. In this paper we focus on signals from coalescing binary neutron stars, for which sufficiently accurate waveform models are already available which can be generated fast enough on a computer that they can be used in Bayesian inference. By performing numerical experiments in stationary, Gaussian noise, we show that for such systems, TIGER is robust against a number of unmodeled fundamental, astrophysical, and instrumental effects, such as differences between waveform approximants, a limited number of post-Newtonian phase contributions being known, the effects of neutron star tidal deformability on the orbital motion, neutron star spins, and instrumental calibration errors.

A new class of compact high sensitive tiltmeter based on the UNISA folded pendulum mechanical architecture

NASA Astrophysics Data System (ADS)

Barone, Fabrizio; Giordano, Gerardo

2018-02-01

We present the Extended Folded Pendulum Model (EFPM), a model developed for a quantitative description of the dynamical behavior of a folded pendulum generically oriented in space. This model, based on the Tait-Bryan angular reference system, highlights the relationship between the folded pendulum orientation in the gravitational field and its natural resonance frequency. Tis model validated by tests performed with a monolithic UNISA Folded Pendulum, highlights a new technique of implementation of folded pendulum based tiltmeters.

Model-order reduction of lumped parameter systems via fractional calculus

NASA Astrophysics Data System (ADS)

Hollkamp, John P.; Sen, Mihir; Semperlotti, Fabio

2018-04-01

This study investigates the use of fractional order differential models to simulate the dynamic response of non-homogeneous discrete systems and to achieve efficient and accurate model order reduction. The traditional integer order approach to the simulation of non-homogeneous systems dictates the use of numerical solutions and often imposes stringent compromises between accuracy and computational performance. Fractional calculus provides an alternative approach where complex dynamical systems can be modeled with compact fractional equations that not only can still guarantee analytical solutions, but can also enable high levels of order reduction without compromising on accuracy. Different approaches are explored in order to transform the integer order model into a reduced order fractional model able to match the dynamic response of the initial system. Analytical and numerical results show that, under certain conditions, an exact match is possible and the resulting fractional differential models have both a complex and frequency-dependent order of the differential operator. The implications of this type of approach for both model order reduction and model synthesis are discussed.

Modelling the long-term vertical dynamics of salt marshes

NASA Astrophysics Data System (ADS)

Zoccarato, Claudia; Teatini, Pietro

2017-04-01

Salt marshes are vulnerable environments hosting complex interactions between physical and biological processes with a strong influence on the dynamics of the marsh evolution. The estimation and prediction of the elevation of a salt-marsh platform is crucial to forecast the marsh growth or regression under different scenarios considering, for example, the potential climate changes. The long-term vertical dynamics of a salt marsh is predicted with the aid of an original finite-element (FE) numerical model accounting for the marsh accretion and compaction and for the variation rates of the relative sea level rise, i.e., land subsidence of the marsh basement and eustatic rise of the sea level. The accretion term considers the vertical sedimentation of organic and inorganic material over the marsh surface, whereas the compaction reflects the progressive consolidation of the porous medium under the increasing load of the overlying younger deposits. The modelling approach is based on a 2D groundwater flow simulator, which provides the pressure evolution within a compacting/accreting vertical cross-section of the marsh assuming that the groundwater flow obeys the relative Darcy's law, coupled to a 1D vertical geomechanical module following Terzaghi's principle of effective intergranular stress. Soil porosity, permeability, and compressibility may vary with the effective intergranular stress according to empirically based relationships. The model also takes into account the geometric non-linearity arising from the consideration of large solid grain movements by using a Lagrangian approach with an adaptive FE mesh. The element geometry changes in time to follow the deposit consolidation and the element number increases in time to follow the sedimentation of new material. The numerical model is tested on different realistic configurations considering the influence of (i) the spatial distribution of the sedimentation rate in relation to the distance from the marsh margin, (ii) the material heterogeneity (mineral vs organic), and (iii) different sequences and times of deposition. Additional experiments are performed to investigate the effect of a stochastic distribution of the material properties to account for the typical high variability of such ecosystems. The characteristic time spanned by the simulations is thousands of years, roughly corresponding to the Holocene.

Probing the Milky Way electron density using multi-messenger astronomy

NASA Astrophysics Data System (ADS)

Breivik, Katelyn; Larson, Shane

2015-04-01

Multi-messenger observations of ultra-compact binaries in both gravitational waves and electromagnetic radiation supply highly complementary information, providing new ways of characterizing the internal dynamics of these systems, as well as new probes of the galaxy itself. Electron density models, used in pulsar distance measurements via the electron dispersion measure, are currently not well constrained. Simultaneous radio and gravitational wave observations of pulsars in binaries provide a method of measuring the average electron density along the line of sight to the pulsar, thus giving a new method for constraining current electron density models. We present this method and assess its viability with simulations of the compact binary component of the Milky Way using the public domain binary evolution code, BSE. This work is supported by NASA Award NNX13AM10G.

Static and Dynamic Compaction of CL-20 Powders

NASA Astrophysics Data System (ADS)

Cooper, Marcia A.; Brundage, Aaron L.; Dudley, Evan C.

2009-12-01

Hexanitrohexaazaisowurtzitane (CL-20) powders were compacted under quasi-static and dynamic loading conditions. A uniaxial compression apparatus quasi-statically compressed the powders to 90% theoretical maximum density with applied stresses up to 0.4 GPa. Dynamic compaction measurements using low-density pressings approximately 64% theoretical maximum density (TMD) were obtained in a single-stage gas gun at impact velocities between 0.17-0.95 km/s. Experiments were conducted in a reverse ballistic arrangement in which the projectile contained the CL-20 powder bed and impacted a target consisting of an aluminized window. VISAR-measured particle velocities at the explosive-window interface determined the shock Hugoniot states for pressures up to 1.3 GPa. Approved for public release, SAND2009-4810C.

Dynamic Modeling and Soil Mechanics for Path Planning of the Mars Exploration Rovers

NASA Technical Reports Server (NTRS)

Trease, Brian; Arvidson, Raymond; Lindemann, Randel; Bennett, Keith; Zhou, Feng; Iagnemma, Karl; Senatore, Carmine; Van Dyke, Lauren

2011-01-01

To help minimize risk of high sinkage and slippage during drives and to better understand soil properties and rover terramechanics from drive data, a multidisciplinary team was formed under the Mars Exploration Rover (MER) project to develop and utilize dynamic computer-based models for rover drives over realistic terrains. The resulting tool, named ARTEMIS (Adams-based Rover Terramechanics and Mobility Interaction Simulator), consists of the dynamic model, a library of terramechanics subroutines, and the high-resolution digital elevation maps of the Mars surface. A 200-element model of the rovers was developed and validated for drop tests before launch, using MSC-Adams dynamic modeling software. Newly modeled terrain-rover interactions include the rut-formation effect of deformable soils, using the classical Bekker-Wong implementation of compaction resistances and bull-dozing effects. The paper presents the details and implementation of the model with two case studies based on actual MER telemetry data. In its final form, ARTEMIS will be used in a predictive manner to assess terrain navigability and will become part of the overall effort in path planning and navigation for both Martian and lunar rovers.

Material Model Evaluation of a Composite Honeycomb Energy Absorber

NASA Technical Reports Server (NTRS)

Jackson, Karen E.; Annett, Martin S.; Fasanella, Edwin L.; Polanco, Michael A.

2012-01-01

A study was conducted to evaluate four different material models in predicting the dynamic crushing response of solid-element-based models of a composite honeycomb energy absorber, designated the Deployable Energy Absorber (DEA). Dynamic crush tests of three DEA components were simulated using the nonlinear, explicit transient dynamic code, LS-DYNA . In addition, a full-scale crash test of an MD-500 helicopter, retrofitted with DEA blocks, was simulated. The four material models used to represent the DEA included: *MAT_CRUSHABLE_FOAM (Mat 63), *MAT_HONEYCOMB (Mat 26), *MAT_SIMPLIFIED_RUBBER/FOAM (Mat 181), and *MAT_TRANSVERSELY_ANISOTROPIC_CRUSHABLE_FOAM (Mat 142). Test-analysis calibration metrics included simple percentage error comparisons of initial peak acceleration, sustained crush stress, and peak compaction acceleration of the DEA components. In addition, the Roadside Safety Verification and Validation Program (RSVVP) was used to assess similarities and differences between the experimental and analytical curves for the full-scale crash test.

Hubble space telescope observations and geometric models of compact multipolar planetary nebulae

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hsia, Chih-Hao; Chau, Wayne; Zhang, Yong

2014-05-20

We report high angular resolution Hubble Space Telescope observations of 10 compact planetary nebulae (PNs). Many interesting internal structures, including multipolar lobes, arcs, two-dimensional rings, tori, and halos, are revealed for the first time. These results suggest that multipolar structures are common among PNs, and these structures develop early in their evolution. From three-dimensional geometric models, we have determined the intrinsic dimensions of the lobes. Assuming the lobes are the result of interactions between later-developed fast winds and previously ejected asymptotic giant branch winds, the geometric structures of these PNs suggest that there are multiple phases of fast winds separatedmore » by temporal variations and/or directional changes. A scenario of evolution from lobe-dominated to cavity-dominated stages is presented. The results reported here will provide serious constraints on any dynamical models of PNs.« less

VLA neutral hydrogen imaging of compact groups

NASA Technical Reports Server (NTRS)

Williams, B. A.; Mcmahon, P. M.; Vangorkom, J. H.

1990-01-01

Images of the neutral hydrogen (H I) in the direction of the compact groups of galaxies, HCG 31, HCG 44, and HCG 79 are presented. The authors find in HCG 31 and HCG 79, emission contained within a cloud much larger than the galaxies as well as the entire group. The H I emission associated with HCG 44 is located within the individual galaxies but shows definite signs of tidal interactions. The authors imaged the distribution and kinematics of neutral hydrogen at the two extremes of group sizes represented in Hickson's sample. HCG 44 is at the upper limit while HCG 18, HCG 31, and HCG 79 are at the lower end. Although the number of groups that have been imaged is still very small, there may be a pattern emerging which describes the H I morphology of compact groups. The true nature of compact groups has been the subject of considerable debate and controversy. The most recent observational and theoretical evidence strongly suggests that compact groups are physically dense, dynamical systems that are in the process of merging into a single object (Williams and Rood 1987, Hickson and Rood 1988, Barnes 1989). The neutral hydrogen deficiency observed by Williams and Rood (1987) is consistent with a model in which frequent galactic collisions and interactions have heated some of the gas during the short lifetime of the group. The H I disks which are normally more extended than the luminous ones are expected to be more sensitive to collisions and to trace the galaxy's response to recent interactions. Very Large Array observations can provide in most cases the spatial resolution needed to confirm the dynamical interactions in these systems.

An Overabundance of Black Hole X-Ray Binaries in the Galactic Center from Tidal Captures

NASA Astrophysics Data System (ADS)

Generozov, A.; Stone, N. C.; Metzger, B. D.; Ostriker, J. P.

2018-05-01

A large population of X-ray binaries (XRBs) was recently discovered within the central parsec of the Galaxy by Hailey et al. (2018). While the presence of compact objects on this scale due to radial mass segregation is, in itself, unsurprising, the fraction of binaries would naively be expected to be small because of how easily primordial binaries are dissociated in the dynamically hot environment of the nuclear star cluster (NSC). We propose that the formation of XRBs in the central parsec is dominated by the tidal capture of stars by black holes (BHs) and neutron stars (NSs). We model the time-dependent radial density profiles of stars and compact objects in the NSC with a Fokker-Planck approach, using the present-day stellar population and rate of in situ massive star (and thus compact object) formation as observational constraints. Of the ˜1 - 4 × 104 BHs that accumulate in the central parsec over the age of the Galaxy, we predict that ˜60 - 200 currently exist as BH-XRBs formed from tidal capture, consistent with the population seen by Hailey et al. (2018). A somewhat lower number of tidal capture NS-XRBs is also predicted. We also use our observationally calibrated models for the NSC to predict rates of other exotic dynamical processes, such as the tidal disruption of stars by the central supermassive black hole (˜10-4 per year at z=0).

Atomistic Structure of Mineral Nano-aggregates from Simulated Compaction and Dewatering.

PubMed

Ho, Tuan Anh; Greathouse, Jeffery A; Wang, Yifeng; Criscenti, Louise J

2017-11-10

The porosity of clay aggregates is an important property governing chemical reactions and fluid flow in low-permeability geologic formations and clay-based engineered barrier systems. Pore spaces in clays include interlayer and interparticle pores. Under compaction and dewatering, the size and geometry of such pore spaces may vary significantly (sub-nanometer to microns) depending on ambient physical and chemical conditions. Here we report a molecular dynamics simulation method to construct a complex and realistic clay-like nanoparticle aggregate with interparticle pores and grain boundaries. The model structure is then used to investigate the effect of dewatering and water content on micro-porosity of the aggregates. The results suggest that slow dewatering would create more compact aggregates compared to fast dewatering. Furthermore, the amount of water present in the aggregates strongly affects the particle-particle interactions and hence the aggregate structure. Detailed analyses of particle-particle and water-particle interactions provide a molecular-scale view of porosity and texture development of the aggregates. The simulation method developed here may also aid in modeling the synthesis of nanostructured materials through self-assembly of nanoparticles.

Atomistic Structure of Mineral Nano-aggregates from Simulated Compaction and Dewatering

DOE PAGES

Ho, Tuan Anh; Greathouse, Jeffery A.; Wang, Yifeng; ...

2017-11-10

The porosity of clay aggregates is an important property governing chemical reactions and fluid flow in low-permeability geologic formations and clay-based engineered barrier systems. Pore spaces in clays include interlayer and interparticle pores. Under compaction and dewatering, the size and geometry of such pore spaces may vary significantly (sub-nanometer to microns) depending on ambient physical and chemical conditions. Here we report a molecular dynamics simulation method to construct a complex and realistic clay-like nanoparticle aggregate with interparticle pores and grain boundaries. The model structure is then used to investigate the effect of dewatering and water content on micro-porosity of themore » aggregates. The results suggest that slow dewatering would create more compact aggregates compared to fast dewatering. Furthermore, the amount of water present in the aggregates strongly affects the particle-particle interactions and hence the aggregate structure. Detailed analyses of particle-particle and water-particle interactions provide a molecular-scale view of porosity and texture development of the aggregates. The simulation method developed here may also aid in modeling the synthesis of nanostructured materials through self-assembly of nanoparticles.« less

Pathwise upper semi-continuity of random pullback attractors along the time axis

NASA Astrophysics Data System (ADS)

Cui, Hongyong; Kloeden, Peter E.; Wu, Fuke

2018-07-01

The pullback attractor of a non-autonomous random dynamical system is a time-indexed family of random sets, typically having the form {At(ṡ) } t ∈ R with each At(ṡ) a random set. This paper is concerned with the nature of such time-dependence. It is shown that the upper semi-continuity of the mapping t ↦At(ω) for each ω fixed has an equivalence relationship with the uniform compactness of the local union ∪s∈IAs(ω) , where I ⊂ R is compact. Applied to a semi-linear degenerate parabolic equation with additive noise and a wave equation with multiplicative noise we show that, in order to prove the above locally uniform compactness and upper semi-continuity, no additional conditions are required, in which sense the two properties appear to be general properties satisfied by a large number of real models.

A Kinetic Model of Trp-Cage Folding from Multiple Biased Molecular Dynamics Simulations

PubMed Central

Marinelli, Fabrizio; Pietrucci, Fabio; Laio, Alessandro; Piana, Stefano

2009-01-01

Trp-cage is a designed 20-residue polypeptide that, in spite of its size, shares several features with larger globular proteins. Although the system has been intensively investigated experimentally and theoretically, its folding mechanism is not yet fully understood. Indeed, some experiments suggest a two-state behavior, while others point to the presence of intermediates. In this work we show that the results of a bias-exchange metadynamics simulation can be used for constructing a detailed thermodynamic and kinetic model of the system. The model, although constructed from a biased simulation, has a quality similar to those extracted from the analysis of long unbiased molecular dynamics trajectories. This is demonstrated by a careful benchmark of the approach on a smaller system, the solvated Ace-Ala3-Nme peptide. For the Trp-cage folding, the model predicts that the relaxation time of 3100 ns observed experimentally is due to the presence of a compact molten globule-like conformation. This state has an occupancy of only 3% at 300 K, but acts as a kinetic trap. Instead, non-compact structures relax to the folded state on the sub-microsecond timescale. The model also predicts the presence of a state at of 4.4 Å from the NMR structure in which the Trp strongly interacts with Pro12. This state can explain the abnormal temperature dependence of the and chemical shifts. The structures of the two most stable misfolded intermediates are in agreement with NMR experiments on the unfolded protein. Our work shows that, using biased molecular dynamics trajectories, it is possible to construct a model describing in detail the Trp-cage folding kinetics and thermodynamics in agreement with experimental data. PMID:19662155

A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations.

PubMed

Marinelli, Fabrizio; Pietrucci, Fabio; Laio, Alessandro; Piana, Stefano

2009-08-01

Trp-cage is a designed 20-residue polypeptide that, in spite of its size, shares several features with larger globular proteins.Although the system has been intensively investigated experimentally and theoretically, its folding mechanism is not yet fully understood. Indeed, some experiments suggest a two-state behavior, while others point to the presence of intermediates. In this work we show that the results of a bias-exchange metadynamics simulation can be used for constructing a detailed thermodynamic and kinetic model of the system. The model, although constructed from a biased simulation, has a quality similar to those extracted from the analysis of long unbiased molecular dynamics trajectories. This is demonstrated by a careful benchmark of the approach on a smaller system, the solvated Ace-Ala3-Nme peptide. For theTrp-cage folding, the model predicts that the relaxation time of 3100 ns observed experimentally is due to the presence of a compact molten globule-like conformation. This state has an occupancy of only 3% at 300 K, but acts as a kinetic trap.Instead, non-compact structures relax to the folded state on the sub-microsecond timescale. The model also predicts the presence of a state at Calpha-RMSD of 4.4 A from the NMR structure in which the Trp strongly interacts with Pro12. This state can explain the abnormal temperature dependence of the Pro12-delta3 and Gly11-alpha3 chemical shifts. The structures of the two most stable misfolded intermediates are in agreement with NMR experiments on the unfolded protein. Our work shows that, using biased molecular dynamics trajectories, it is possible to construct a model describing in detail the Trp-cage folding kinetics and thermodynamics in agreement with experimental data.

Dust grains in the coma of 67P/Churyumov-Gerasimenko - link with surface properties and cometary activity

NASA Astrophysics Data System (ADS)

Capria, M. T.; Ivanovski, S.; Zakharov, W.; Capaccioni, F.; Filacchione, G.; De Sanctis, M. C.; Rotundi, A.; Della Corte, V.; Longobardo, A.; Palomba, E.; Colangeli, L.; Bockelee-Morvan, D.; Erard, S.; Leyrat, C.

2016-11-01

The imaging spectrometer VIRTIS and the dust analyzer GIADA, onboard Rosetta, made an extensive observation of the dust particles in the coma of the comet 67P/Churyumov-Gerasimenko. From the analysis of GIADA data, two different kind of particles have been revealed, compact and fluffy with different compositions and dynamical properties. Compact particles are characterized by densities of about 10E3 kg/m3, while fluffy particles have an almost fractal nature, with densities less than 1 kg/m3. In this work we present the initial results of a model linking the dust flux distribution, as obtained from a theoretical thermal nucleus model, with a model describing the dynamics of aspherical grains in the coma. The results are discussed in the context of the latest observations from VIRTIS and GIADA instruments. The 2D nucleus thermal model, when applied to the real shape of the comet, provides the size distribution and physical properties of the emitted grains at different times and location on the surface. The thermal model can simulate grains of various size distribution, composition and physical properties. This information is used as an input for the dust dynamical model that follows the emitted particles in the coma. The main source of heating is the solar illumination. In the dust dynamical model, the grain trajectory of emitted particles remains in a plane perpendicular to the rotational axis and the direction of illumination is taken to be in the same plane (i.e. does not cause transversal forces). The dust particles are assumed to be isothermal convex bodies and temperature changes only induce modest changes in the aerodynamic force (twice higher temperature changes aerodynamic force less than 30%). This study reviews the theoretical values at which temperature difference starts to play a role on the dynamics. We discuss to what extent the particle's temperature affects the terminal velocities of the dust grains in the 67P coma in dependence on their mass and temperature constrained by the observations.

Dust grains in the coma of 67P/Churyumov-Gerasimenko - link with surface properties and cometary activity

NASA Astrophysics Data System (ADS)

Capria, Maria Teresa; Ivanovski, Stavro; Zakharov, Vladimir; Capaccioni, Fabrizio; Filacchione, Gianrico; De Sanctis, Maria Cristina; rotundi, alessandra; della corte, vincenzo; Longobardo, Andrea; Palomba, Ernesto; colangeli, luigi; Bockelee-Morvan, Dominique; Érard, Stéphane; Leyrat, Cedric; VIRTIS, GIADA

2016-10-01

The imaging spectrometer VIRTIS and the dust analyzer GIADA, onboard Rosetta, made an extensive observation of the dust particles in the coma of the comet 67P/Churyumov-Gerasimenko. From the analysis of GIADA data, two different kind of particles have been revealed, compact and fluffy with different compositions and dynamical properties. Compact particles are characterized by densities of about 103 kg/m3, while fluffy particles have an almost fractal nature, with densities less than 1 kg/m3.In this work we present the initial results of a model linking the dust flux distribution, as obtained from a theoretical thermal nucleus model, with a model describing the dynamics of aspherical grains in the coma. The results are discussed in the context of the latest observations from VIRTIS and GIADA instruments.The 2D nucleus thermal model, when applied to the real shape of the comet, provides the size distribution and physical properties of the emitted grains at different times and location on the surface. The thermal model can simulate grains of various size distribution, composition and physical properties. This information is used as an input for the dust dynamical model that follows the emitted particles in the coma. The main source of heating is the solar illumination. In the dust dynamical model, the grain trajectory of emitted particles remains in a plane perpendicular to the rotational axis and the direction of illumination is taken to be in the same plane (i.e. does not cause transversal forces). The dust particles are assumed to be isothermal convex bodies and temperature changes only induce modest changes in the aerodynamic force (twice higher temperature changes aerodynamic force less than ~30%). This study reviews the theoretical values at which temperature difference starts to play a role on the dynamics. We discuss to what extent the particle's temperature affects the terminal velocities of the dust grains in the 67P coma in dependence on their mass and temperature constrained by the observations.

USGS VDP Infrasound Sensor Evaluation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Slad, George William; Merchant, Bion J.

2016-10-01

Sandia National Laboratories has tested and evaluated two infrasound sensors, the model VDP100 and VDP250, built in-house at the USGS Cascades Volcano Observatory. The purpose of the infrasound sensor evaluation was to determine a measured sensitivity, self-noise, dynamic range and nominal transfer function. Notable features of the VDP sensors include novel and durable construction and compact size.

TGF-β-independent CTGF induction regulates cell adhesion mediated drug resistance by increasing collagen I in HCC.

PubMed

Song, Yeonhwa; Kim, Jin-Sun; Choi, Eun Kyung; Kim, Joon; Kim, Kang Mo; Seo, Haeng Ran

2017-03-28

Hepatocellular carcinoma (HCC) is resistant to conventional chemotherapeutic agents and remains an unmet medical need. Here, we demonstrate a mechanism of cell adhesion-mediated drug resistance using a variety of HCC spheroid models to overcome environment-mediated drug resistance in HCC. We classified spheroids into two groups, tightly compacted and loosely compacted aggregates, based on investigation of dynamics of spheroid formation. Our results show that compactness of HCC spheroids correlated with fibroblast-like characteristics, collagen 1A1 (COL1A1) content, and capacity for chemoresistance. We also showed that ablation of COL1A1 attenuated not only the capacity for compact-spheroid formation, but also chemoresistance. Generally, connective tissue growth factor (CTGF) acts downstream of transforming growth factor (TGF)-β and promotes collagen I fiber deposition in the tumor microenvironment. Importantly, we found that TGF-β-independent CTGF is upregulated and regulates cell adhesion-mediated drug resistance by inducing COL1A1 in tightly compacted HCC spheroids. Furthermore, losartan, which inhibits collagen I synthesis, impaired the compactness of spheroids via disruption of cell-cell contacts and increased the efficacy of anticancer therapeutics in HCC cell line- and HCC patient-derived tumor spheroids. These results strongly suggest functional roles for CTGF-induced collagen I expression in formation of compact spheroids and in evading anticancer therapies in HCC, and suggest that losartan, administered in combination with conventional chemotherapy, might be an effective treatment for liver cancer.

Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm.

PubMed

Yu, Isseki; Mori, Takaharu; Ando, Tadashi; Harada, Ryuhei; Jung, Jaewoon; Sugita, Yuji; Feig, Michael

2016-11-01

Biological macromolecules function in highly crowded cellular environments. The structure and dynamics of proteins and nucleic acids are well characterized in vitro, but in vivo crowding effects remain unclear. Using molecular dynamics simulations of a comprehensive atomistic model cytoplasm we found that protein-protein interactions may destabilize native protein structures, whereas metabolite interactions may induce more compact states due to electrostatic screening. Protein-protein interactions also resulted in significant variations in reduced macromolecular diffusion under crowded conditions, while metabolites exhibited significant two-dimensional surface diffusion and altered protein-ligand binding that may reduce the effective concentration of metabolites and ligands in vivo. Metabolic enzymes showed weak non-specific association in cellular environments attributed to solvation and entropic effects. These effects are expected to have broad implications for the in vivo functioning of biomolecules. This work is a first step towards physically realistic in silico whole-cell models that connect molecular with cellular biology.

Where are compact groups in the local Universe?

NASA Astrophysics Data System (ADS)

Díaz-Giménez, Eugenia; Zandivarez, Ariel

2015-06-01

Aims: The purpose of this work is to perform a statistical analysis of the location of compact groups in the Universe from observational and semi-analytical points of view. Methods: We used the velocity-filtered compact group sample extracted from the Two Micron All Sky Survey for our analysis. We also used a new sample of galaxy groups identified in the 2M++ galaxy redshift catalogue as tracers of the large-scale structure. We defined a procedure to search in redshift space for compact groups that can be considered embedded in other overdense systems and applied this criterion to several possible combinations of different compact and galaxy group subsamples. We also performed similar analyses for simulated compact and galaxy groups identified in a 2M++ mock galaxy catalogue constructed from the Millennium Run Simulation I plus a semi-analytical model of galaxy formation. Results: We observed that only ~27% of the compact groups can be considered to be embedded in larger overdense systems, that is, most of the compact groups are more likely to be isolated systems. The embedded compact groups show statistically smaller sizes and brighter surface brightnesses than non-embedded systems. No evidence was found that embedded compact groups are more likely to inhabit galaxy groups with a given virial mass or with a particular dynamical state. We found very similar results when the analysis was performed using mock compact and galaxy groups. Based on the semi-analytical studies, we predict that 70% of the embedded compact groups probably are 3D physically dense systems. Finally, real space information allowed us to reveal the bimodal behaviour of the distribution of 3D minimum distances between compact and galaxy groups. Conclusions: The location of compact groups should be carefully taken into account when comparing properties of galaxies in environments that are a priori different. Appendices are available in electronic form at http://www.aanda.orgFull Tables B.1 and B.2 are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/578/A61

Dynamic Stiffness Transfer Function of an Electromechanical Actuator Using System Identification

NASA Astrophysics Data System (ADS)

Kim, Sang Hwa; Tahk, Min-Jea

2018-04-01

In the aeroelastic analysis of flight vehicles with electromechanical actuators (EMAs), an accurate prediction of flutter requires dynamic stiffness characteristics of the EMA. The dynamic stiffness transfer function of the EMA with brushless direct current (BLDC) motor can be obtained by conducting complicated mathematical calculations of control algorithms and mechanical/electrical nonlinearities using linearization techniques. Thus, system identification approaches using experimental data, as an alternative, have considerable advantages. However, the test setup for system identification is expensive and complex, and experimental procedures for data collection are time-consuming tasks. To obtain the dynamic stiffness transfer function, this paper proposes a linear system identification method that uses information obtained from a reliable dynamic stiffness model with a control algorithm and nonlinearities. The results of this study show that the system identification procedure is compact, and the transfer function is able to describe the dynamic stiffness characteristics of the EMA. In addition, to verify the validity of the system identification method, the simulation results of the dynamic stiffness transfer function and the dynamic stiffness model were compared with the experimental data for various external loads.

Galaxy evolution. Isolated compact elliptical galaxies: stellar systems that ran away.

PubMed

Chilingarian, Igor; Zolotukhin, Ivan

2015-04-24

Compact elliptical galaxies form a rare class of stellar system (~30 presently known) characterized by high stellar densities and small sizes and often harboring metal-rich stars. They were thought to form through tidal stripping of massive progenitors, until two isolated objects were discovered where massive galaxies performing the stripping could not be identified. By mining astronomical survey data, we have now found 195 compact elliptical galaxies in all types of environment. They all share similar dynamical and stellar population properties. Dynamical analysis for nonisolated galaxies demonstrates the feasibility of their ejection from host clusters and groups by three-body encounters, which is in agreement with numerical simulations. Hence, isolated compact elliptical and isolated quiescent dwarf galaxies are tidally stripped systems that ran away from their hosts. Copyright © 2015, American Association for the Advancement of Science.

Nonlinear oscillations of compact stars in the vicinity of the maximum mass configuration

NASA Astrophysics Data System (ADS)

Brillante, A.; Mishustin, I. N.

2015-07-01

We solve the dynamical GR equations for the spherically symmetric evolution of compact stars in the vicinity of the maximum mass, for which instability sets in according to linear perturbation theory. The calculations are done with the analytical Zeldovich-like EOS P=a≤ft(ρ-ρ_0\\right) and with the TM1 parametrisation of the RMF model. The initial configurations for the dynamical calculations are represented by spherical stars with equilibrium density profile, which are perturbed by either i) an artificially added inward velocity field proportional to the radial coordinate, or ii) a rarefaction corresponding to a static and expanded star. These configurations are evolved using a one-dimensional GR hydro code for ideal and barotropic fluids. Depending on the initial conditions we obtain either stable oscillations or the collapse to a black hole. The minimal amplitude of the perturbation, needed to trigger gravitational collapse is evaluated. The approximate independence of this energy on the type of perturbation is pointed out. At the threshold we find type-I critical behaviour for all stellar models considered and discuss the dependence of the time scaling exponent on the baryon mass and EOS.

Multi-scale modeling of diffusion-controlled reactions in polymers: renormalisation of reactivity parameters.

PubMed

Everaers, Ralf; Rosa, Angelo

2012-01-07

The quantitative description of polymeric systems requires hierarchical modeling schemes, which bridge the gap between the atomic scale, relevant to chemical or biomolecular reactions, and the macromolecular scale, where the longest relaxation modes occur. Here, we use the formalism for diffusion-controlled reactions in polymers developed by Wilemski, Fixman, and Doi to discuss the renormalisation of the reactivity parameters in polymer models with varying spatial resolution. In particular, we show that the adjustments are independent of chain length. As a consequence, it is possible to match reactions times between descriptions with different resolution for relatively short reference chains and to use the coarse-grained model to make quantitative predictions for longer chains. We illustrate our results by a detailed discussion of the classical problem of chain cyclization in the Rouse model, which offers the simplest example of a multi-scale descriptions, if we consider differently discretized Rouse models for the same physical system. Moreover, we are able to explore different combinations of compact and non-compact diffusion in the local and large-scale dynamics by varying the embedding dimension.

From Discrete Breathers to Many Body Localization and Flatbands

NASA Astrophysics Data System (ADS)

Flach, Sergej

Discrete breathers (DB) and intrinsic localized modes (ILM) are synonymic dynamical states on nonlinear lattices - periodic in time and localized in space, and widely observed in many applications. I will discuss the connections between DBs and many-body localization (MBL) and the properties of DBs on flatband networks. A dense quantized gas of strongly excited DBs can lead to a MBL phase in a variety of different lattice models. Its classical counterpart corresponds to a 'nonergodic metal' in the MBL language, or to a nonGibbsean selftrapped state in the language of nonlinear dynamics. Flatband networks are lattices with small amplitude waves exhibiting macroscopic degeneracy in their band structure due to local symmetries, destructive interference, compact localized eigenstates and horizontal flat bands. DBs can preserve the compactness of localization in the presence of nonlinearity with properly tuned internal phase relationships, making them promising tools for control of the phase coherence of waves. Also at New Zealand Institute of Advanced Study, Massey University, Auckland, New Zealand.

Variability aware compact model characterization for statistical circuit design optimization

NASA Astrophysics Data System (ADS)

Qiao, Ying; Qian, Kun; Spanos, Costas J.

2012-03-01

Variability modeling at the compact transistor model level can enable statistically optimized designs in view of limitations imposed by the fabrication technology. In this work we propose an efficient variabilityaware compact model characterization methodology based on the linear propagation of variance. Hierarchical spatial variability patterns of selected compact model parameters are directly calculated from transistor array test structures. This methodology has been implemented and tested using transistor I-V measurements and the EKV-EPFL compact model. Calculation results compare well to full-wafer direct model parameter extractions. Further studies are done on the proper selection of both compact model parameters and electrical measurement metrics used in the method.

Hydromechanical Modeling of Fluid Flow in the Lower Crust

NASA Astrophysics Data System (ADS)

Connolly, J.

2011-12-01

The lower crust lies within an ambiguous rheological regime between the brittle upper crust and ductile sub-lithospheric mantle. This ambiguity has allowed two schools of thought to develop concerning the nature of fluid flow in the lower crust. The classical school holds that lower crustal rocks are inviscid and that any fluid generated by metamorphic devolatilization is squeezed out of rocks as rapidly as it is produced. According to this school, permeability is a dynamic property and fluid flow is upward. In contrast, the modern school uses concepts from upper crustal hydrology that presume implicitly, if not explicitly, that rocks are rigid or, at most, brittle. For the modern school, the details of crustal permeability determine fluid flow and as these details are poorly known almost anything is possible. Reality, to the extent that it is reflected by inference from field studies, offers some support to both schools. In particular, evidence of significant lateral and channelized fluid flow are consistent with flow in rigid media, while evidence for short (104 - 105 y) grain-scale fluid-rock interaction during much longer metamorphic events, suggests that reaction-generated grain-scale permeability is sealed rapidly by compaction; a phenomenon that is also essential to prevent extensive retrograde metamorphism. These observations provide a compelling argument for recognizing in conceptual models of lower crustal fluid flow that rocks are neither inviscid nor rigid, but compact by viscous mechanisms on a finite time-scale. This presentation will review the principle consequences of, and obstacles to, incorporating compaction in such models. The role of viscous compaction in the lower crust is extraordinarily uncertain, but ignoring this uncertainty in models of lower crustal fluid flow does not make the models any more certain. Models inevitably invoke an initial steady state hydraulic regime. This initial steady state is critical to model outcomes because it determines the compaction time and length scales and, thereby, the response of the system to perturbations. Unfortunately, because metamorphic devolatilization is the most probable source of lower crustal fluids, the assumption of an initial steady state leaves much to be desired. In truth, in the modeling of lower crustal fluid flow, less is known about the initial state than is known about possible perturbations to it, e.g., metamorphic fluid production. Compaction is a bad and good news story. The bad news is that local flow patterns may be influenced by unknowable details; the good news is that compaction-driven fluid flow has a tendency to self-organize. Self-organization eliminates the dependence on details that are present on spatial or temporal scales that are smaller than the compaction length and time scales. Porosity waves are the mechanism for this self-organization, through which dilational deformation is localized in time and space to create pathways for fluid expulsion. The resulting flow patterns are sensitive to material properties and initial state, thus, inversion of natural flow patterns offers the greatest hope for constraining the compaction scales. Knowledge of these scales is also important because they limit the influence of external forcings on flow patterns, e.g., a shear zone may induce lateral or downward fluid flow, but only on the compaction time and length scales.

Load and inflation pressure effects on soil compaction of forwarder tires

Treesearch

Tim McDonald; Tom Way; Bjorn Lofgren; Fernando Seixas; Mats Landstrom

1996-01-01

A standard forwarder tire (600/55-26.5) was tested to determine its range of soil compaction with various inflation pressures and dynamic loads. Past research has shown that compaction of heavier equipment can be somewhat mitigated by operating with lower inflation pressures. Results indicated a significant effect of both load and inflation pressure on bulk density,...

The mond external field effect on the dynamics of the globular clusters: general considerations and application to NGC 2419

DOE Office of Scientific and Technical Information (OSTI.GOV)

Derakhshani, Kamran, E-mail: kderakhshani@iasbs.ac.ir

2014-03-01

In this paper, we investigate the external field effect in the context of the MOdified Newtonian Dynamics (MOND) on the surface brightness and velocity dispersion profiles of globular clusters (GCs). Using N-MODY, which is an N-body simulation code with a MOND potential solver, we show that the general effect of the external field for diffuse clusters, which obey MOND in most of their parts, is that it pushes the dynamics toward the Newtonian regime. On the other hand, for more compact clusters, which are essentially Newtonian in their inner parts, the external field is effective mainly in the outer partsmore » of compact clusters. As a case study, we then choose the remote Galactic GC NGC 2419. By varying the cluster mass, half-light radius, and mass-to-light ratio, we aim to find a model that will reproduce the observational data most effectively, using N-MODY. We find that even if we take the Galactic external field into account, a Newtonian Plummer sphere represents the observational data better than MOND to an order of magnitude in terms of the total χ{sup 2} of surface brightness and velocity dispersion.« less

The MOND External Field Effect on the Dynamics of the Globular Clusters: General Considerations and Application to NGC 2419

NASA Astrophysics Data System (ADS)

Derakhshani, Kamran

2014-03-01

In this paper, we investigate the external field effect in the context of the MOdified Newtonian Dynamics (MOND) on the surface brightness and velocity dispersion profiles of globular clusters (GCs). Using N-MODY, which is an N-body simulation code with a MOND potential solver, we show that the general effect of the external field for diffuse clusters, which obey MOND in most of their parts, is that it pushes the dynamics toward the Newtonian regime. On the other hand, for more compact clusters, which are essentially Newtonian in their inner parts, the external field is effective mainly in the outer parts of compact clusters. As a case study, we then choose the remote Galactic GC NGC 2419. By varying the cluster mass, half-light radius, and mass-to-light ratio, we aim to find a model that will reproduce the observational data most effectively, using N-MODY. We find that even if we take the Galactic external field into account, a Newtonian Plummer sphere represents the observational data better than MOND to an order of magnitude in terms of the total χ2 of surface brightness and velocity dispersion.

Dynamic passive pressure on abutments and pile caps.

DOT National Transportation Integrated Search

2010-08-01

This study investigated the lateral load response of a full-scale pile cap with nine different backfill conditions, more specifically being: 1) no backfill present (baseline response), 2) densely compacted clean sand, 3) loosely compacted clean sand,...

Chromatin organization regulates viral egress dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aho, Vesa; Myllys, Markko; Ruokolainen, Visa

Various types of DNA viruses are known to elicit the formation of a large nuclear viral replication compartment and marginalization of the cell chromatin. We used three-dimensional soft x-ray tomography, confocal and electron microscopy, combined with numerical modelling of capsid diffusion to analyse the molecular organization of chromatin in herpes simplex virus 1 infection and its effect on the transport of progeny viral capsids to the nuclear envelope. Our data showed that the formation of the viral replication compartment at late infection resulted in the enrichment of heterochromatin in the nuclear periphery accompanied by the compaction of chromatin. Random walkmore » modelling of herpes simplex virus 1–sized particles in a three-dimensional soft x-ray tomography reconstruction of an infected cell nucleus demonstrated that the peripheral, compacted chromatin restricts viral capsid diffusion, but due to interchromatin channels capsids are able to reach the nuclear envelope, the site of their nuclear egress.« less

Chromatin organization regulates viral egress dynamics

DOE PAGES

Aho, Vesa; Myllys, Markko; Ruokolainen, Visa; ...

2017-06-16

Various types of DNA viruses are known to elicit the formation of a large nuclear viral replication compartment and marginalization of the cell chromatin. We used three-dimensional soft x-ray tomography, confocal and electron microscopy, combined with numerical modelling of capsid diffusion to analyse the molecular organization of chromatin in herpes simplex virus 1 infection and its effect on the transport of progeny viral capsids to the nuclear envelope. Our data showed that the formation of the viral replication compartment at late infection resulted in the enrichment of heterochromatin in the nuclear periphery accompanied by the compaction of chromatin. Random walkmore » modelling of herpes simplex virus 1–sized particles in a three-dimensional soft x-ray tomography reconstruction of an infected cell nucleus demonstrated that the peripheral, compacted chromatin restricts viral capsid diffusion, but due to interchromatin channels capsids are able to reach the nuclear envelope, the site of their nuclear egress.« less

Study on the Effect of Steel Wheel and Ground on Single Steel Vibratory Roller

NASA Astrophysics Data System (ADS)

Li, Jiabo; You, Guanghui; Qiao, Jiabin; Ye, Min; Guo, Jin; Zhang, Hongyang

2018-03-01

In the compacting operation of single drum vibratory roller, the forces acting on the foundation of drum include the weight of the drum, the weight of the frame, the exciting force and so on. Based on the theoretical study of ground mechanics, this paper analyzes and calculates the forces acting on the steel wheel and the ground, and obtains the distribution of the laminar stress in the ground when the working plane vibrates. Derive the formula of dynamic compressive stress and static compressive stress in the foundation during vibration compaction. Through the compaction test of the soil trough of 20T single drum roller, the compressive stress data of the soil hydraulic field are obtained. The data of the dynamic compressive stress and the static compressive stress of each layer during the third compaction are obtained, and the theoretical research is verified.

Experimental Measurement and Numerical Modeling of the Effective Thermal Conductivity of TRISO Fuel Compacts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Folsom, Charles; Xing, Changhu; Jensen, Colby

2015-03-01

Accurate modeling capability of thermal conductivity of tristructural-isotropic (TRISO) fuel compacts is important to fuel performance modeling and safety of Generation IV reactors. To date, the effective thermal conductivity (ETC) of tristructural-isotropic (TRISO) fuel compacts has not been measured directly. The composite fuel is a complicated structure comprised of layered particles in a graphite matrix. In this work, finite element modeling is used to validate an analytic ETC model for application to the composite fuel material for particle-volume fractions up to 40%. The effect of each individual layer of a TRISO particle is analyzed showing that the overall ETC ofmore » the compact is most sensitive to the outer layer constituent. In conjunction with the modeling results, the thermal conductivity of matrix-graphite compacts and the ETC of surrogate TRISO fuel compacts have been successfully measured using a previously developed measurement system. The ETC of the surrogate fuel compacts varies between 50 and 30 W m -1 K -1 over a temperature range of 50-600°C. As a result of the numerical modeling and experimental measurements of the fuel compacts, a new model and approach for analyzing the effect of compact constituent materials on ETC is proposed that can estimate the fuel compact ETC with approximately 15-20% more accuracy than the old method. Using the ETC model with measured thermal conductivity of the graphite matrix-only material indicate that, in the composite form, the matrix material has a much greater thermal conductivity, which is attributed to the high anisotropy of graphite thermal conductivity. Therefore, simpler measurements of individual TRISO compact constituents combined with an analytic ETC model, will not provide accurate predictions of overall ETC of the compacts emphasizing the need for measurements of composite, surrogate compacts.« less

Non-orthogonal internally contracted multi-configurational perturbation theory (NICPT): Dynamic electron correlation for large, compact active spaces

NASA Astrophysics Data System (ADS)

Kähler, Sven; Olsen, Jeppe

2017-11-01

A computational method is presented for systems that require high-level treatments of static and dynamic electron correlation but cannot be treated using conventional complete active space self-consistent field-based methods due to the required size of the active space. Our method introduces an efficient algorithm for perturbative dynamic correlation corrections for compact non-orthogonal MCSCF calculations. In the algorithm, biorthonormal expansions of orbitals and CI-wave functions are used to reduce the scaling of the performance determining step from quadratic to linear in the number of configurations. We describe a hierarchy of configuration spaces that can be chosen for the active space. Potential curves for the nitrogen molecule and the chromium dimer are compared for different configuration spaces. Already the most compact spaces yield qualitatively correct potentials that with increasing size of configuration spaces systematically approach complete active space results.

Computational Workbench for Multibody Dynamics

NASA Technical Reports Server (NTRS)

Edmonds, Karina

2007-01-01

PyCraft is a computer program that provides an interactive, workbenchlike computing environment for developing and testing algorithms for multibody dynamics. Examples of multibody dynamic systems amenable to analysis with the help of PyCraft include land vehicles, spacecraft, robots, and molecular models. PyCraft is based on the Spatial-Operator- Algebra (SOA) formulation for multibody dynamics. The SOA operators enable construction of simple and compact representations of complex multibody dynamical equations. Within the Py-Craft computational workbench, users can, essentially, use the high-level SOA operator notation to represent the variety of dynamical quantities and algorithms and to perform computations interactively. PyCraft provides a Python-language interface to underlying C++ code. Working with SOA concepts, a user can create and manipulate Python-level operator classes in order to implement and evaluate new dynamical quantities and algorithms. During use of PyCraft, virtually all SOA-based algorithms are available for computational experiments.

Compression and compaction properties of plasticised high molecular weight hydroxypropylmethylcellulose (HPMC) as a hydrophilic matrix carrier.

PubMed

Hardy, I J; Cook, W G; Melia, C D

2006-03-27

The compression and compaction properties of plasticised high molecular weight USP2208 HPMC were investigated with the aim of improving tablet formation in HPMC matrices. Experiments were conducted on binary polymer-plasticiser mixtures containing 17 wt.% plasticiser, and on a model hydrophilic matrix formulation. A selection of common plasticisers, propylene glycol (PG) glycerol (GLY), dibutyl sebacate (DBS) and triacetin (TRI), were chosen to provide a range of plasticisation efficiencies. T(g) values of binary mixtures determined by Dynamic Mechanical Thermal Analysis (DMTA) were in rank order PG>GLY>DBS>TRI>unplasticised HPMC. Mean yield pressure, strain rate sensitivity (SRS) and plastic compaction energy were measured during the compression process, and matrix properties were monitored by tensile strength and axial expansion post-compression. Compression of HPMC:PG binary mixtures resulted in a marked reduction in mean yield pressure and a significant increase in SRS, suggesting a classical plasticisation of HPMC analogous to that produced by water. The effect of PG was also reflected in matrix properties. At compression pressures below 70 MPa, compacts had greater tensile strength than those from native polymer, and over the range 35 and 70 MPa, lower plastic compaction values showed that less energy was required to produce the compacts. Axial expansion was also reduced. Above 70 MPa tensile strength was limited to 3 MPa. These results suggest a useful improvement of HPMC compaction and matrix properties by PG plasticisation, with lowering of T(g) resulting in improved deformation and internal bonding. These effects were also detectable in the model formulation containing a minimal polymer content for an HPMC matrix. Other plasticisers were largely ineffective, matrix strength was poor and axial expansion high. The hydrophobic plasticisers (DBS, TRI) reduced yield pressure substantially, but were poor plasticisers and showed compaction mechanisms that could be attributed to phase separation. The effect of different plasticisers suggests that the deformation characteristics of this HPMC in the solid state is dominated by hydroxyl mediated bonding, rather than by hydrophobic interactions between methoxyl-rich regions.

Influence of winding construction on starter-generator thermal processes

NASA Astrophysics Data System (ADS)

Grachev, P. Yu; Bazarov, A. A.; Tabachinskiy, A. S.

2018-01-01

Dynamic processes in starter-generators features high winding are overcurrent. It can lead to insulation overheating and fault operation mode. For hybrid and electric vehicles, new high efficiency construction of induction machines windings is proposed. Stator thermal processes need be considered in the most difficult operation modes. The article describes construction features of new compact stator windings, electromagnetic and thermal models of processes in stator windings and explains the influence of innovative construction on thermal processes. Models are based on finite element method.

Compact modeling of CRS devices based on ECM cells for memory, logic and neuromorphic applications.

PubMed

Linn, E; Menzel, S; Ferch, S; Waser, R

2013-09-27

Dynamic physics-based models of resistive switching devices are of great interest for the realization of complex circuits required for memory, logic and neuromorphic applications. Here, we apply such a model of an electrochemical metallization (ECM) cell to complementary resistive switches (CRSs), which are favorable devices to realize ultra-dense passive crossbar arrays. Since a CRS consists of two resistive switching devices, it is straightforward to apply the dynamic ECM model for CRS simulation with MATLAB and SPICE, enabling study of the device behavior in terms of sweep rate and series resistance variations. Furthermore, typical memory access operations as well as basic implication logic operations can be analyzed, revealing requirements for proper spike and level read operations. This basic understanding facilitates applications of massively parallel computing paradigms required for neuromorphic applications.

Keck-I MOSFIRE spectroscopy of compact star-forming galaxies at z ≳ 2: high velocity dispersions in progenitors of compact quiescent galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barro, Guillermo; Koo, David C.; Faber, Sandra M.

2014-11-10

We present Keck-I MOSFIRE near-infrared spectroscopy for a sample of 13 compact star-forming galaxies (SFGs) at redshift 2 ≤ z ≤ 2.5 with star formation rates of SFR ∼ 100 M {sub ☉} yr{sup –1} and masses of log(M/M {sub ☉}) ∼10.8. Their high integrated gas velocity dispersions of σ{sub int} =230{sub −30}{sup +40} km s{sup –1}, as measured from emission lines of Hα and [O III], and the resultant M {sub *}-σ{sub int} relation and M {sub *}-M {sub dyn} all match well to those of compact quiescent galaxies at z ∼ 2, as measured from stellar absorption lines.more » Since log(M {sub *}/M {sub dyn}) =–0.06 ± 0.2 dex, these compact SFGs appear to be dynamically relaxed and evolved, i.e., depleted in gas and dark matter (<13{sub −13}{sup +17}%), and present larger σ{sub int} than their non-compact SFG counterparts at the same epoch. Without infusion of external gas, depletion timescales are short, less than ∼300 Myr. This discovery adds another link to our new dynamical chain of evidence that compact SFGs at z ≳ 2 are already losing gas to become the immediate progenitors of compact quiescent galaxies by z ∼ 2.« less

Extreme gravity tests with gravitational waves from compact binary coalescences: (II) ringdown

NASA Astrophysics Data System (ADS)

Berti, Emanuele; Yagi, Kent; Yang, Huan; Yunes, Nicolás

2018-05-01

The LIGO/Virgo detections of binary black hole mergers marked a watershed moment in astronomy, ushering in the era of precision tests of Kerr dynamics. We review theoretical and experimental challenges that must be overcome to carry out black hole spectroscopy with present and future gravitational wave detectors. Among other topics, we discuss quasinormal mode excitation in binary mergers, astrophysical event rates, tests of black hole dynamics in modified theories of gravity, parameterized "post-Kerr" ringdown tests, exotic compact objects, and proposed data analysis methods to improve spectroscopic tests of Kerr dynamics by stacking multiple events.

Dynamic Crushing Response of Closed-cell Aluminium Foam at Variable Strain Rates

NASA Astrophysics Data System (ADS)

Islam, M. A.; Kader, M. A.; Escobedo, J. P.; Hazell, P. J.; Appleby-Thomas, G. J.; Quadir, M. Z.

2015-06-01

The impact response of aluminium foams is essential for assessing their crashworthiness and energy absorption capacity for potential applications. The dynamic compactions of closed-cell aluminium foams (CYMAT) have been tested at variable strain rates. Microstructural characterization has also been carried out. The low strain rate impact test has been carried out using drop weight experiments while the high strain compaction test has been carried out via plate impact experiments. The post impacted samples have been examined using optical and electron microscopy to observe the microstructural changes during dynamic loading. This combination of dynamic deformation during impact and post impact microstructural analysis helped to evaluate the pore collapse mechanism and impact energy absorption characteristics.

Dynamics of Galaxies in Compact Groups II.

NASA Astrophysics Data System (ADS)

Amram, P.; Mendes de Oliveira, C.

We show partial results of a program based on Fabry-Perot Hα velocity field data of compact groups taken at the ESO and the CFH 3.6m telescopes in order to analyze the kinematics of compact group galaxies. This project has three main goals: 1. determine the evolutionary stages of the groups; 2. search for tidal dwarf galaxies and 3. determine the Tully-Fisher relation for the group galaxies. We classify the compact groups studied so far into the following subclasses : (1) merging groups, (2) strongly interacting, (3) mildly interacting, (4) kinematically undisturbed and (5) false groups/single galaxy (details are given in the companion paper Mendes de Oliveira and Amram, 2000). We present examples of velocity fields of galaxies in compact groups that are in different evolutionary stages as classified from the kinematic disturbances. Spiral-only groups have often been considered chance alignments or groups in the very early stages of dynamical evolution. However, we find that the kinematics of the member galaxies for spiral-only groups in classes (1), (2) and (3) above display peculiarities which suggest that the galaxies know of the presence of their neighbors.

Mesoscale Modeling of Chromatin Folding

NASA Astrophysics Data System (ADS)

Schlick, Tamar

2009-03-01

Eukaryotic chromatin is the fundamental protein/nucleic acid unit that stores the genetic material. Understanding how chromatin fibers fold and unfold in physiological conditions is important for interpreting fundamental biological processes like DNA replication and transcription regulation. Using a mesoscopic model of oligonucleosome chains and tailored sampling protocols, we elucidate the energetics of oligonucleosome folding/unfolding and the role of each histone tail, linker histones, and divalent ions in regulating chromatin structure. The resulting compact topologies reconcile features of the zigzag model with straight linker DNAs with the solenoid model with bent linker DNAs for optimal fiber organization and reveal dynamic and energetic aspects involved.

Influence of Organic Amendment and Compaction on Nutrient Dynamics in a Saturated Saline-Sodic Soil from the Riparian Zone.

PubMed

Miller, J J; Bremer, E; Curtis, T

2016-07-01

Cattle grazing in wet riparian pastures may influence nutrient dynamics due to nutrient deposition in feces and urine, soil compaction, and vegetation loss. We conducted a lab incubation study with a saline-sodic riparian soil to study nutrient (N, P, S, Fe, Mn, Cu, and Zn) dynamics in soil pore water using Plant Root Simulator (PRS) probes and release of nutrients into the overlying ponded water during flooding. The treatment factors were organic amendment (manure, roots, and unamended control), compaction (compacted, uncompacted), and burial time (3, 7, and 14 d). Amendment treatment had the greatest impact on nutrient dynamics, followed by burial time, whereas compaction had little impact. The findings generally supported our hypothesis that organic amendments should first increase nitrate loss, then increase Mn mobility, then Fe mobility and associated release of P, and finally increase sulfate loss. Declines in nitrate due to amendment addition were small because nitrate was at low levels in all treatments due to high denitrification potential instead of being released to soil pore water or overlying water. Addition of organic amendment strongly increased Mn and Fe concentrations in overlying water and of adsorbed Fe on PRS probes but only increased Mn on PRS probes on Day 3 due to subsequent displacement from ion exchange membranes. Transport of P to overlying water was increased by organic amendment addition but less so for manure than roots despite higher P on PRS probes. The findings showed that saline-sodic soils in riparian zones are generally a nutrient source for P and are a nutrient sink for N as measured using PRS probes after 3 to 7 d of flooding. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

New hydrologic model of fluid migration in deep porous media

NASA Astrophysics Data System (ADS)

Dmitrievsky, A.; Balanyuk, I.

2009-04-01

The authors present a new hydrological model of mantle processes that effect on formation of oil-and-gas bearing basins, fault tectonics and thermal convection. Any fluid migration is initially induced by lateral stresses in the crust and lithosphere which result from global geodynamic processes related to the mantle convection. The global processes are further transformed into regional movements in weakness zones. Model of porous media in deep fractured zones and idea of self-oscillation processes in mantle layers and fractured zones of the crust at different depths was used as the basis for developed concept. The content of these notions resides in the fact that there are conditions of dynamic balance in mantle layers originating as a result of combination and alternate actions of compaction and dilatance mechanisms. These mechanisms can be manifested in different combinations and under different conditions as well as can be complemented by other processes influencing on regime of fluid migration. They can act under condition of passive margin, ocean rift and ocean subduction zones as well as in consolidated platform and sheet. Self-oscillation regime, sub vertical direction of fluid flows, anomalously high layer pressure, and high level of anomalies of various geophysical fields are common for them. A certain class of fluid dynamic models describing consolidation of sedimentary basins, free oscillation processes slow and quick (at the final stage) fluid dynamic processes of the evolution of a sedimentary basin in subduction zones is considered for the first time. The last model of quick fluid dynamic processes reflects the process of formation of hydrocarbon deposits in the zones of collision of lithosphere plates. The results of numerical simulation and diagrams reflecting consecutive stages of the gas-fluid dynamic front propagation are assessed of the Pri-Caspian depression as the example. Calculations with this model will simultaneously be carried out for the sedimentary basins of Timan-Pechora region, Barents Sea, Volga-Ural area, etc. Hydrologic model of deep porous media and the idea of self-oscillation processes in fractured layers of the crust at different depths were used as the basis for developed concept. The content of these notions resides in the fact that there are conditions of dynamic balance in fractured layers originating as a result of combination and alternate actions of compaction and dilatance mechanisms. These mechanisms can be manifested in different combinations and under different conditions as well as can be complemented by other processes influencing on regime of fluid migration. They can act under condition of passive margin, rift and subduction zones as well as in consolidated platform and sheet. Self-oscillation regime, sub vertical direction of fluid flows, anomalously high layer pressure, and high level of anomalies of various geophysical fields are common for them. Specific manifestations of these mechanisms can vary in dependence on geological settings and geodynamic situations. In particular, periods of self-oscillations and depths of fractured layers can be various. Orientation of layers can be not only horizontal, but vertical as well, that is, self-oscillations can occur not only in deep porous media, but in faults and impaired fractured zones as well. Predominating vertical fluid migration can be accompanied by horizontal migration along crust waveguide. A set of fluid dynamic models is considered. Mathematical modeling of geodynamic and fluid dynamic processes in these zones seems very promising. Combined consideration of geodynamic and fluid dynamic aspects in a model of lithosphere plates collision enables to understand the influence of P-T conditions and shear deformations on the mechanism of hydrocarbon generation and to look after their migration and to explain these processes, but also to predict some features essential for the search and exploration of hydrocarbon fields in these regions and their classification. In terms of compaction models, multiphase filtration in a piezo-conduction mode and models of deep porous media major stages of fluid evolution under the conditions of developing passive margins and in the zones of collision of plates are described. In particular, compaction models of one of the stages of fluid mode evolution within a sedimentary basin and fluid migration from the convergence zones toward the upper layers are considered. In the final part of work, computation of fluid transfer of hydrocarbons in a pulse mode described by the equation of piezo-conductivity is presented for a mature oil-bearing sedimentary basin over individual sections for short periods of a few hundreds of years. These calculations were executed on the basis of a new mathematical method TEKON and computer programs for quantitative analysis of fluid migration and formation of hydrocarbon deposits with account taken for actual geometrical and lithological properties of the layers. On the basis of the specified numerical calculations the scales, form, and routes of fluid movement were disclosed, as well as the formation of zones of anomalously high rock pressure and non-traditional hydrocarbon deposits.

Design and dynamic modeling of electrorheological fluid-based variable-stiffness fin for robotic fish

NASA Astrophysics Data System (ADS)

Bazaz Behbahani, Sanaz; Tan, Xiaobo

2017-08-01

Fish actively control their stiffness in different swimming conditions. Inspired by such an adaptive behavior, in this paper we study the design, prototyping, and dynamic modeling of compact, tunable-stiffness fins for robotic fish, where electrorheological (ER) fluid serves as the enabling element. A multi-layer composite fin with an ER fluid core is prototyped and utilized to investigate the influence of electrical field on its performance. Hamilton's principle is used to derive the dynamic equations of motion of the flexible fin, and Lighthill's large-amplitude elongated-body theory is adopted to estimate the hydrodynamic force when the fin undergoes base-actuated rotation. The dynamic equations are then discretized using the finite element method, to obtain an approximate numerical solution. Experiments are conducted on the prototyped flexible ER fluid-filled beam for parameter identification and validation of the proposed model, and for examining the effectiveness of electrically controlled stiffness tuning. In particular, it is found that the natural frequency is increased by almost 40% when the applied electric field changes from 0 to 1.5× {10}6 {{V}} {{{m}}}-1.

On the slow dynamics of near-field acoustically levitated objects under High excitation frequencies

NASA Astrophysics Data System (ADS)

Ilssar, Dotan; Bucher, Izhak

2015-10-01

This paper introduces a simplified analytical model describing the governing dynamics of near-field acoustically levitated objects. The simplification converts the equation of motion coupled with the partial differential equation of a compressible fluid, into a compact, second order ordinary differential equation, where the local stiffness and damping are transparent. The simplified model allows one to more easily analyse and design near-field acoustic levitation based systems, and it also helps to devise closed-loop controller algorithms for such systems. Near-field acoustic levitation employs fast ultrasonic vibrations of a driving surface and exploits the viscosity and the compressibility of a gaseous medium to achieve average, load carrying pressure. It is demonstrated that the slow dynamics dominates the transient behaviour, while the time-scale associated with the fast, ultrasonic excitation has a small presence in the oscillations of the levitated object. Indeed, the present paper formulates the slow dynamics under an ultrasonic excitation without the need to explicitly consider the latter. The simplified model is compared with a numerical scheme based on Reynolds equation and with experiments, both showing reasonably good results.

Constraining the number of compact remnants near Sgr A*

NASA Astrophysics Data System (ADS)

Deegan, Patrick; Nayakshin, Sergei

2007-05-01

Due to dynamical friction stellar mass black holes and neutron stars are expected to form high-density cusps in the inner parsec of our Galaxy. These compact remnants, expected to number around 20000, may be accreting cold dense gas present there, and give rise to potentially observable X-ray emission. Here we build a simple but detailed time-dependent model of such emission. The possibility that these accretion flows are radiatively inefficient is taken into account and brings in some uncertainty in the conclusions. Despite this uncertainty, we find that at least several X-ray sources of this nature should be detectable with Chandra at any one time. Turning this issue around, we also ask a question of what current observational constraints might be telling us about the total number of compact remnants. In our `best guess' model, a cusp of ~40000 remnants overpredicts the number of discrete sources and the total X-ray luminosity of the inner parsec, and is hence ruled out. In the most radiatively inefficient scenario that we consider, the radiative efficiency is set to be as small as ɛ = 10-5. In this rather unlikely scenario, a cusp of ~40000 black holes would be allowed by the data, but several individual sources should still be visible. Future observations of the distribution and orbits of the cold ionized gas in the inner parsec of our Galaxy will put tighter constraints on the cusp of compact remnants.

High-Order Methods for Computational Fluid Dynamics: A Brief Review of Compact Differential Formulations on Unstructured Grids

NASA Technical Reports Server (NTRS)

Huynh, H. T.; Wang, Z. J.; Vincent, P. E.

2013-01-01

Popular high-order schemes with compact stencils for Computational Fluid Dynamics (CFD) include Discontinuous Galerkin (DG), Spectral Difference (SD), and Spectral Volume (SV) methods. The recently proposed Flux Reconstruction (FR) approach or Correction Procedure using Reconstruction (CPR) is based on a differential formulation and provides a unifying framework for these high-order schemes. Here we present a brief review of recent developments for the FR/CPR schemes as well as some pacing items.

Dynamic J sub I-R Curve Testing of HY-130 Steel.

DTIC Science & Technology

1981-10-01

Society for Testing and Materials 0C Degrees Celsius COD Crack-opening displacement CT Compact tension CVN Charpy V-notch dia Diameter in-lb/in 2 Inch...inches per second. A key curve for HY-130 plate was developed under dynamic loading conditions using subsized compact specimens and was applied to...face grooves were machined along the crack line to a total section reduction of 20% with a standard Charpy V-notch (CVN) cutter (450 included angle

Comprehensive Fuel Spray Modeling and Impacts on Chamber Acoustics in Combustion Dynamics Simulations

DTIC Science & Technology

2013-05-01

multiple swirler configurations and fuel injector locations at atmospheric pressure con- ditions. Both single-element and multiple-element LDI...the swirl number, Reynolds’ number and injector location in the LDI element. Besides the multi-phase flow characteristics, several experimen- tal...region downstream of the fuel injector on account of a sta- ble and compact precessing vortex core. Recent ex- periments conducted by the Purdue group have

Transport Phenomena in Fluid Dynamics: Matrix Heat Exchangers and Their Applications in Energy Systems

DTIC Science & Technology

2009-07-01

presented a summary of recent research on boiling in microchannels . He addressed the topics of macro scale versus micro scale heat transfer , two phase...flow regime, flow boiling 14 heat transfer results for microchannels , heat transfer mechanisms in microchannels , and flow boiling models for... Heat Transfer Boiling In Minichannel And Microchannel Flow Passages Of Compact Evaporators, Keynote Lecture Presented at the Engineering Foundation

Three-Dimensional Dynamic Loading of Sand

DTIC Science & Technology

2011-02-01

strength yield strength of 40 MPa. In addition the inclusion of grain-on-grain stiction (friction) plays a major role in the compaction of sand at low...strains Figure 5 Stress-strain behavior for various grain and strength configurations When compared to experimental stre ss-strain data, both...of Materials, DYMAT 2009 Brussels Belgium, pg 1545–1551 [xi] Crawford, D.A. 2005. Using mesoscale modeling to investigate the role of material

Dynamic Compressibility of High-Porosity Dampers of Thermal and Shock Loadings:. Modeling and Experiment

NASA Astrophysics Data System (ADS)

Bragov, Anatoly; Konstantinov, Alexander; Lomunov, Andrey; Sadyrin, Anatoly; Sergeichev, Ivan; Kruszka, Leopold

High-porosity materials, such as chamotte and mullite, possess a heat of fusion. Owing to their properties, these materials can be used with success as damping materials in containers for airplane, automobile, etc. transportation of radioactive or highly toxic materials. Experimental studies of the dynamic properties have been executed with using some original modifications of the Kolsky method. These modified experiments have allowed studying the dynamic compressibility of high-porosity chamotte at deformations up to 80% and amplitudes up to 50 MPa. The equations of the mathematical model describing shock compacting of chamotte as a highly porous, fragile, collapsing material are presented. Deformation of high-porous materials at non-stationary loadings is usually accompanied by fragile destruction of interpore partitions as observed in other porous ceramic materials. Comparison of numerical and experimental results has shown their good conformity.

Ballistic aggregation in systems of inelastic particles: Cluster growth, structure, and aging

NASA Astrophysics Data System (ADS)

Paul, Subhajit; Das, Subir K.

2017-07-01

We study far-from-equilibrium dynamics in models of freely cooling granular gas and ballistically aggregating compact clusters. For both the cases, from event-driven molecular dynamics simulations, we have presented detailed results on structure and dynamics in space dimensions d =1 and 2. Via appropriate analyses it has been confirmed that the ballistic aggregation mechanism applies in d =1 granular gases as well. Aging phenomena for this mechanism, in both the dimensions, have been studied via the two-time density autocorrelation function. This quantity is demonstrated to exhibit scaling property similar to that in the standard phase transition kinetics. The corresponding functional forms have been quantified and the outcomes have been discussed in connection with the structural properties. Our results on aging establish a more complete equivalence between the granular gas and the ballistic aggregation models in d =1 .

Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm

PubMed Central

Yu, Isseki; Mori, Takaharu; Ando, Tadashi; Harada, Ryuhei; Jung, Jaewoon; Sugita, Yuji; Feig, Michael

2016-01-01

Biological macromolecules function in highly crowded cellular environments. The structure and dynamics of proteins and nucleic acids are well characterized in vitro, but in vivo crowding effects remain unclear. Using molecular dynamics simulations of a comprehensive atomistic model cytoplasm we found that protein-protein interactions may destabilize native protein structures, whereas metabolite interactions may induce more compact states due to electrostatic screening. Protein-protein interactions also resulted in significant variations in reduced macromolecular diffusion under crowded conditions, while metabolites exhibited significant two-dimensional surface diffusion and altered protein-ligand binding that may reduce the effective concentration of metabolites and ligands in vivo. Metabolic enzymes showed weak non-specific association in cellular environments attributed to solvation and entropic effects. These effects are expected to have broad implications for the in vivo functioning of biomolecules. This work is a first step towards physically realistic in silico whole-cell models that connect molecular with cellular biology. DOI: http://dx.doi.org/10.7554/eLife.19274.001 PMID:27801646

On the global dynamics of a chronic myelogenous leukemia model

NASA Astrophysics Data System (ADS)

Krishchenko, Alexander P.; Starkov, Konstantin E.

2016-04-01

In this paper we analyze some features of global dynamics of a three-dimensional chronic myelogenous leukemia (CML) model with the help of the stability analysis and the localization method of compact invariant sets. The behavior of CML model is defined by concentrations of three cellpopulations circulating in the blood: naive T cells, effector T cells specific to CML and CML cancer cells. We prove that the dynamics of the CML system around the tumor-free equilibrium point is unstable. Further, we compute ultimate upper bounds for all three cell populations and provide the existence conditions of the positively invariant polytope. One ultimate lower bound is obtained as well. Moreover, we describe the iterative localization procedure for refining localization bounds; this procedure is based on cyclic using of localizing functions. Applying this procedure we obtain conditions under which the internal tumor equilibrium point is globally asymptotically stable. Our theoretical analyses are supplied by results of the numerical simulation.

Enhancement of a dynamic porous model considering compression-release hysteresis behavior: application to graphite

NASA Astrophysics Data System (ADS)

Jodar, B.; Seisson, G.; Hébert, D.; Bertron, I.; Boustie, M.; Berthe, L.

2016-08-01

Because of their shock wave attenuation properties, porous materials and foams are increasingly used for various applications such as graphite in the aerospace industry and polyurethane (PU) foams in biomedical engineering. For these two materials, the absence of residual compaction after compression and release cycles limits the efficiency of the usual numerical dynamic porous models such as P-α and POREQST. In this paper, we suggest a simple enhancement of the latter in order to take into account the compression-release hysteresis behavior experimentally observed for the considered materials. The new model, named H-POREQST, was implemented into a Lagrangian hydrocode and tested for simulating plate impact experiments at moderate pressure onto a commercial grade of porous graphite (EDM3). It proved to be in far better agreement with experimental data than the original model which encourages us to pursue numerical tests and developments.

Approximate Dynamic Programming: Combining Regional and Local State Following Approximations.

PubMed

Deptula, Patryk; Rosenfeld, Joel A; Kamalapurkar, Rushikesh; Dixon, Warren E

2018-06-01

An infinite-horizon optimal regulation problem for a control-affine deterministic system is solved online using a local state following (StaF) kernel and a regional model-based reinforcement learning (R-MBRL) method to approximate the value function. Unlike traditional methods such as R-MBRL that aim to approximate the value function over a large compact set, the StaF kernel approach aims to approximate the value function in a local neighborhood of the state that travels within a compact set. In this paper, the value function is approximated using a state-dependent convex combination of the StaF-based and the R-MBRL-based approximations. As the state enters a neighborhood containing the origin, the value function transitions from being approximated by the StaF approach to the R-MBRL approach. Semiglobal uniformly ultimately bounded (SGUUB) convergence of the system states to the origin is established using a Lyapunov-based analysis. Simulation results are provided for two, three, six, and ten-state dynamical systems to demonstrate the scalability and performance of the developed method.

Compact Conformations of Human Protein Disulfide Isomerase

PubMed Central

Cui, Lei; Ding, Xiang; Niu, Lili; Yang, Fuquan; Wang, Chao; Wang, Chih-chen; Lou, Jizhong

2014-01-01

Protein disulfide isomerase (PDI) composed of four thioredoxin-like domains a, b, b', and a', is a key enzyme catalyzing oxidative protein folding in the endoplasmic reticulum. Large scale molecular dynamics simulations starting from the crystal structures of human PDI (hPDI) in the oxidized and reduced states were performed. The results indicate that hPDI adopts more compact conformations in solution than in the crystal structures, which are stabilized primarily by inter-domain interactions, including the salt bridges between domains a and b' observed for the first time. A prominent feature of the compact conformations is that the two catalytic domains a and a' can locate close enough for intra-molecular electron transfer, which was confirmed by the characterization of an intermediate with a disulfide between the two domains. Mutations, which disrupt the inter-domain interactions, lead to decreased reductase activity of hPDI. Our molecular dynamics simulations and biochemical experiments reveal the intrinsic conformational dynamics of hPDI and its biological impact. PMID:25084354

High-Speed Experiments on Combustion-Powered Actuation for Dynamic Stall Suppression

NASA Technical Reports Server (NTRS)

Matalanis, Claude; Bowles, Patrick; Lorber, Peter; Crittenden, Thomas; Glezer, Ari; Schaeffler, Norman; Min, Byung-Young; Jee, Solkeun; Kuczek, Andrzej; Wake, Brian

2016-01-01

This work documents high-speed wind tunnel experiments conducted on a pitching airfoil equipped with an array of combustion-powered actuators (COMPACT). The main objective of these experiments was to demonstrate the stall-suppression capability of COMPACT on a high-lift rotorcraft airfoil, the VR-12, at relevant Mach numbers. Through dynamic pressure measurements at the airfoil surface it was shown that COMPACT can positively affect the stall behavior of the VR-12 at Mach numbers up to 0.4. Static airfoil results demonstrated 25% and 50% increases in post-stall lift at Mach numbers of 0.4 and 0.3, respectively. Deep dynamic stall results showed cycle-averaged lift coefficient increases up to 11% at Mach 0.4. Furthermore, it was shown that these benefits could be achieved with relatively few pulses during down-stroke and with no need to pre-anticipate the stall event. The flow mechanisms responsible for stall suppression were investigated using particle image velocimetry.

Computational Analysis of AMPK-Mediated Neuroprotection Suggests Acute Excitotoxic Bioenergetics and Glucose Dynamics Are Regulated by a Minimal Set of Critical Reactions.

PubMed

Connolly, Niamh M C; D'Orsi, Beatrice; Monsefi, Naser; Huber, Heinrich J; Prehn, Jochen H M

2016-01-01

Loss of ionic homeostasis during excitotoxic stress depletes ATP levels and activates the AMP-activated protein kinase (AMPK), re-establishing energy production by increased expression of glucose transporters on the plasma membrane. Here, we develop a computational model to test whether this AMPK-mediated glucose import can rapidly restore ATP levels following a transient excitotoxic insult. We demonstrate that a highly compact model, comprising a minimal set of critical reactions, can closely resemble the rapid dynamics and cell-to-cell heterogeneity of ATP levels and AMPK activity, as confirmed by single-cell fluorescence microscopy in rat primary cerebellar neurons exposed to glutamate excitotoxicity. The model further correctly predicted an excitotoxicity-induced elevation of intracellular glucose, and well resembled the delayed recovery and cell-to-cell heterogeneity of experimentally measured glucose dynamics. The model also predicted necrotic bioenergetic collapse and altered calcium dynamics following more severe excitotoxic insults. In conclusion, our data suggest that a minimal set of critical reactions may determine the acute bioenergetic response to transient excitotoxicity and that an AMPK-mediated increase in intracellular glucose may be sufficient to rapidly recover ATP levels following an excitotoxic insult.

Computational Analysis of AMPK-Mediated Neuroprotection Suggests Acute Excitotoxic Bioenergetics and Glucose Dynamics Are Regulated by a Minimal Set of Critical Reactions

PubMed Central

Connolly, Niamh M. C.; D’Orsi, Beatrice; Monsefi, Naser; Huber, Heinrich J.; Prehn, Jochen H. M.

2016-01-01

Loss of ionic homeostasis during excitotoxic stress depletes ATP levels and activates the AMP-activated protein kinase (AMPK), re-establishing energy production by increased expression of glucose transporters on the plasma membrane. Here, we develop a computational model to test whether this AMPK-mediated glucose import can rapidly restore ATP levels following a transient excitotoxic insult. We demonstrate that a highly compact model, comprising a minimal set of critical reactions, can closely resemble the rapid dynamics and cell-to-cell heterogeneity of ATP levels and AMPK activity, as confirmed by single-cell fluorescence microscopy in rat primary cerebellar neurons exposed to glutamate excitotoxicity. The model further correctly predicted an excitotoxicity-induced elevation of intracellular glucose, and well resembled the delayed recovery and cell-to-cell heterogeneity of experimentally measured glucose dynamics. The model also predicted necrotic bioenergetic collapse and altered calcium dynamics following more severe excitotoxic insults. In conclusion, our data suggest that a minimal set of critical reactions may determine the acute bioenergetic response to transient excitotoxicity and that an AMPK-mediated increase in intracellular glucose may be sufficient to rapidly recover ATP levels following an excitotoxic insult. PMID:26840769

On dynamical systems approaches and methods in f ( R ) cosmology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alho, Artur; Carloni, Sante; Uggla, Claes, E-mail: aalho@math.ist.utl.pt, E-mail: sante.carloni@tecnico.ulisboa.pt, E-mail: claes.uggla@kau.se

We discuss dynamical systems approaches and methods applied to flat Robertson-Walker models in f ( R )-gravity. We argue that a complete description of the solution space of a model requires a global state space analysis that motivates globally covering state space adapted variables. This is shown explicitly by an illustrative example, f ( R ) = R + α R {sup 2}, α > 0, for which we introduce new regular dynamical systems on global compactly extended state spaces for the Jordan and Einstein frames. This example also allows us to illustrate several local and global dynamical systems techniquesmore » involving, e.g., blow ups of nilpotent fixed points, center manifold analysis, averaging, and use of monotone functions. As a result of applying dynamical systems methods to globally state space adapted dynamical systems formulations, we obtain pictures of the entire solution spaces in both the Jordan and the Einstein frames. This shows, e.g., that due to the domain of the conformal transformation between the Jordan and Einstein frames, not all the solutions in the Jordan frame are completely contained in the Einstein frame. We also make comparisons with previous dynamical systems approaches to f ( R ) cosmology and discuss their advantages and disadvantages.« less

Neutron stars in Horndeski gravity

NASA Astrophysics Data System (ADS)

Maselli, Andrea; Silva, Hector O.; Minamitsuji, Masato; Berti, Emanuele

2016-06-01

Horndeski's theory of gravity is the most general scalar-tensor theory with a single scalar whose equations of motion contain at most second-order derivatives. A subsector of Horndeski's theory known as "Fab Four" gravity allows for dynamical self-tuning of the quantum vacuum energy, and therefore it has received particular attention in cosmology as a possible alternative to the Λ CDM model. Here we study compact stars in Fab Four gravity, which includes as special cases general relativity ("George"), Einstein-dilaton-Gauss-Bonnet gravity ("Ringo"), theories with a nonminimal coupling with the Einstein tensor ("John"), and theories involving the double-dual of the Riemann tensor ("Paul"). We generalize and extend previous results in theories of the John class and were not able to find realistic compact stars in theories involving the Paul class.

A compact model for electroosmotic flows in microfluidic devices

NASA Astrophysics Data System (ADS)

Qiao, R.; Aluru, N. R.

2002-09-01

A compact model to compute flow rate and pressure in microfluidic devices is presented. The microfluidic flow can be driven by either an applied electric field or a combined electric field and pressure gradient. A step change in the ζ-potential on a channel wall is treated by a pressure source in the compact model. The pressure source is obtained from the pressure Poisson equation and conservation of mass principle. In the proposed compact model, the complex fluidic network is simplified by an electrical circuit. The compact model can predict the flow rate, pressure distribution and other basic characteristics in microfluidic channels quickly with good accuracy when compared to detailed numerical simulation. Using the compact model, fluidic mixing and dispersion control are studied in a complex microfluidic network.

Dynamic thermal characteristics of heat pipe via segmented thermal resistance model for electric vehicle battery cooling

NASA Astrophysics Data System (ADS)

Liu, Feifei; Lan, Fengchong; Chen, Jiqing

2016-07-01

Heat pipe cooling for battery thermal management systems (BTMSs) in electric vehicles (EVs) is growing due to its advantages of high cooling efficiency, compact structure and flexible geometry. Considering the transient conduction, phase change and uncertain thermal conditions in a heat pipe, it is challenging to obtain the dynamic thermal characteristics accurately in such complex heat and mass transfer process. In this paper, a ;segmented; thermal resistance model of a heat pipe is proposed based on thermal circuit method. The equivalent conductivities of different segments, viz. the evaporator and condenser of pipe, are used to determine their own thermal parameters and conditions integrated into the thermal model of battery for a complete three-dimensional (3D) computational fluid dynamics (CFD) simulation. The proposed ;segmented; model shows more precise than the ;non-segmented; model by the comparison of simulated and experimental temperature distribution and variation of an ultra-thin micro heat pipe (UMHP) battery pack, and has less calculation error to obtain dynamic thermal behavior for exact thermal design, management and control of heat pipe BTMSs. Using the ;segmented; model, the cooling effect of the UMHP pack with different natural/forced convection and arrangements is predicted, and the results correspond well to the tests.

Swarming Patterns in a Two-Dimensional Kinematic Model for Biological Groups

NASA Astrophysics Data System (ADS)

Topaz, Chad

2004-03-01

We construct a continuum model for the motion of biological organisms experiencing social interactions and study its pattern-forming behavior. The model takes the form of a conservation law in two spatial dimensions. Social interactions are modeled in the velocity term, which is nonlocal in the population density. The dynamics of the model may be uniquely decomposed into incompressible motion and potential motion. For the purely incompressible case, the model resembles that for fluid dynamical vortex patches. There exist solutions that have constant population density and compact support for all time. Numerical simulations produce rotating structures with circular cores and spiral arms, reminiscent of naturally observed swarms such as ant mills. For the purely potential case, the model resembles a nonlocal (forwards or backwards) porous media equation, describing aggregation or dispersion of the population. For the aggregative case, the population clumps into regions of high and low density with a predictable characteristic length scale that is confirmed by numerical simulations.

Trust and compactness in social network groups.

PubMed

De Meo, Pasquale; Ferrara, Emilio; Rosaci, Domenico; Sarné, Giuseppe M L

2015-02-01

Understanding the dynamics behind group formation and evolution in social networks is considered an instrumental milestone to better describe how individuals gather and form communities, how they enjoy and share the platform contents, how they are driven by their preferences/tastes, and how their behaviors are influenced by peers. In this context, the notion of compactness of a social group is particularly relevant. While the literature usually refers to compactness as a measure to merely determine how much members of a group are similar among each other, we argue that the mutual trustworthiness between the members should be considered as an important factor in defining such a term. In fact, trust has profound effects on the dynamics of group formation and their evolution: individuals are more likely to join with and stay in a group if they can trust other group members. In this paper, we propose a quantitative measure of group compactness that takes into account both the similarity and the trustworthiness among users, and we present an algorithm to optimize such a measure. We provide empirical results, obtained from the real social networks EPINIONS and CIAO, that compare our notion of compactness versus the traditional notion of user similarity, clearly proving the advantages of our approach.

The failure of earthquake failure models

USGS Publications Warehouse

Gomberg, J.

2001-01-01

In this study I show that simple heuristic models and numerical calculations suggest that an entire class of commonly invoked models of earthquake failure processes cannot explain triggering of seismicity by transient or "dynamic" stress changes, such as stress changes associated with passing seismic waves. The models of this class have the common feature that the physical property characterizing failure increases at an accelerating rate when a fault is loaded (stressed) at a constant rate. Examples include models that invoke rate state friction or subcritical crack growth, in which the properties characterizing failure are slip or crack length, respectively. Failure occurs when the rate at which these grow accelerates to values exceeding some critical threshold. These accelerating failure models do not predict the finite durations of dynamically triggered earthquake sequences (e.g., at aftershock or remote distances). Some of the failure models belonging to this class have been used to explain static stress triggering of aftershocks. This may imply that the physical processes underlying dynamic triggering differs or that currently applied models of static triggering require modification. If the former is the case, we might appeal to physical mechanisms relying on oscillatory deformations such as compaction of saturated fault gouge leading to pore pressure increase, or cyclic fatigue. However, if dynamic and static triggering mechanisms differ, one still needs to ask why static triggering models that neglect these dynamic mechanisms appear to explain many observations. If the static and dynamic triggering mechanisms are the same, perhaps assumptions about accelerating failure and/or that triggering advances the failure times of a population of inevitable earthquakes are incorrect.

Study on dynamic characteristics of hydraulic pumping unit on offshore platform

NASA Astrophysics Data System (ADS)

Chang, Zong-yu; Yu, Yan-qun; Qi, Yao-guang

2017-12-01

A new technology of offshore oil rod pumping production is developed for offshore heavy oil recovery. A new type of miniature hydraulic pumping unit with long-stroke, low pumping speed and compact structure is designed based on the spatial characteristics of offshore platforms. By combining the strengths of sinusoidal velocity curve and trapezoidal velocity curve, a kinematical model of the acceleration, the velocity and displacement of the pumping unit's hanging point is established. The results show that the pumping unit has good kinematic characteristics of smooth motion and small dynamic load. The multi-degree-of-freedom dynamic model of the single-well pumping unit is established. The first and second order natural frequencies of the sucker rod string subsystem and the pumping unit subsystem are studied. The results show that the first and the second order natural frequencies among the pumping rod string, pumping unit-platform subsystem and the dynamic excitation have differences over 5 times from each other, indicating that resonance phenomenon will not appear during the operation and the dynamic requirements for field use are met in the system.

A finite element model of rigid body structures actuated by dielectric elastomer actuators

NASA Astrophysics Data System (ADS)

Simone, F.; Linnebach, P.; Rizzello, G.; Seelecke, S.

2018-06-01

This paper presents on finite element (FE) modeling and simulation of dielectric elastomer actuators (DEAs) coupled with articulated structures. DEAs have proven to represent an effective transduction technology for the realization of large deformation, low-power consuming, and fast mechatronic actuators. However, the complex dynamic behavior of the material, characterized by nonlinearities and rate-dependent phenomena, makes it difficult to accurately model and design DEA systems. The problem is further complicated in case the DEA is used to activate articulated structures, which increase both system complexity and implementation effort of numerical simulation models. In this paper, we present a model based tool which allows to effectively implement and simulate complex articulated systems actuated by DEAs. A first prototype of a compact switch actuated by DEA membranes is chosen as reference study to introduce the methodology. The commercially available FE software COMSOL is used for implementing and coupling a physics-based dynamic model of the DEA with the external structure, i.e., the switch. The model is then experimentally calibrated and validated in both quasi-static and dynamic loading conditions. Finally, preliminary results on how to use the simulation tool to optimize the design are presented.

Embedding dynamical networks into distributed models

NASA Astrophysics Data System (ADS)

Innocenti, Giacomo; Paoletti, Paolo

2015-07-01

Large networks of interacting dynamical systems are well-known for the complex behaviours they are able to display, even when each node features a quite simple dynamics. Despite examples of such networks being widespread both in nature and in technological applications, the interplay between the local and the macroscopic behaviour, through the interconnection topology, is still not completely understood. Moreover, traditional analytical methods for dynamical response analysis fail because of the intrinsically large dimension of the phase space of the network which makes the general problem intractable. Therefore, in this paper we develop an approach aiming to condense all the information in a compact description based on partial differential equations. By focusing on propagative phenomena, rigorous conditions under which the original network dynamical properties can be successfully analysed within the proposed framework are derived as well. A network of Fitzhugh-Nagumo systems is finally used to illustrate the effectiveness of the proposed method.

Molecular Basis for Structural Heterogeneity of an Intrinsically Disordered Protein Bound to a Partner by Combined ESI-IM-MS and Modeling

NASA Astrophysics Data System (ADS)

D'Urzo, Annalisa; Konijnenberg, Albert; Rossetti, Giulia; Habchi, Johnny; Li, Jinyu; Carloni, Paolo; Sobott, Frank; Longhi, Sonia; Grandori, Rita

2015-03-01

Intrinsically disordered proteins (IDPs) form biologically active complexes that can retain a high degree of conformational disorder, escaping structural characterization by conventional approaches. An example is offered by the complex between the intrinsically disordered NTAIL domain and the phosphoprotein X domain (PXD) from measles virus (MeV). Here, distinct conformers of the complex are detected by electrospray ionization-mass spectrometry (ESI-MS) and ion mobility (IM) techniques yielding estimates for the solvent-accessible surface area (SASA) in solution and the average collision cross-section (CCS) in the gas phase. Computational modeling of the complex in solution, based on experimental constraints, provides atomic-resolution structural models featuring different levels of compactness. The resulting models indicate high structural heterogeneity. The intermolecular interactions are predominantly hydrophobic, not only in the ordered core of the complex, but also in the dynamic, disordered regions. Electrostatic interactions become involved in the more compact states. This system represents an illustrative example of a hydrophobic complex that could be directly detected in the gas phase by native mass spectrometry. This work represents the first attempt to modeling the entire NTAIL domain bound to PXD at atomic resolution.

A dynamical systems approach to the tilted Bianchi models of solvable type

NASA Astrophysics Data System (ADS)

Coley, Alan; Hervik, Sigbjørn

2005-02-01

We use a dynamical systems approach to analyse the tilting spatially homogeneous Bianchi models of solvable type (e.g., types VIh and VIIh) with a perfect fluid and a linear barotropic γ-law equation of state. In particular, we study the late-time behaviour of tilted Bianchi models, with an emphasis on the existence of equilibrium points and their stability properties. We briefly discuss the tilting Bianchi type V models and the late-time asymptotic behaviour of irrotational Bianchi type VII0 models. We prove the important result that for non-inflationary Bianchi type VIIh models vacuum plane-wave solutions are the only future attracting equilibrium points in the Bianchi type VIIh invariant set. We then investigate the dynamics close to the plane-wave solutions in more detail, and discover some new features that arise in the dynamical behaviour of Bianchi cosmologies with the inclusion of tilt. We point out that in a tiny open set of parameter space in the type IV model (the loophole) there exist closed curves which act as attracting limit cycles. More interestingly, in the Bianchi type VIIh models there is a bifurcation in which a set of equilibrium points turns into closed orbits. There is a region in which both sets of closed curves coexist, and it appears that for the type VIIh models in this region the solution curves approach a compact surface which is topologically a torus.

A Green Solvent Induced DNA Package

NASA Astrophysics Data System (ADS)

Satpathi, Sagar; Sengupta, Abhigyan; Hridya, V. M.; Gavvala, Krishna; Koninti, Raj Kumar; Roy, Bibhisan; Hazra, Partha

2015-03-01

Mechanistic details of DNA compaction is essential blue print for gene regulation in living organisms. Many in vitro studies have been implemented using several compaction agents. However, these compacting agents may have some kinds of cytotoxic effects to the cells. To minimize this aspect, several research works had been performed, but people have never focused green solvent, i.e. room temperature ionic liquid as DNA compaction agent. To the best of our knowledge, this is the first ever report where we have shown that guanidinium tris(pentafluoroethyl)trifluorophosphate (Gua-IL) acts as a DNA compacting agent. The compaction ability of Gua-IL has been verified by different spectroscopic techniques, like steady state emission, circular dichroism, dynamic light scattering and UV melting. Notably, we have extensively probed this compaction by Gua-IL through field emission scanning electron microscopy (FE-SEM) and fluorescence microscopy images. We also have discussed the plausible compaction mechanism process of DNA by Gua-IL. Our results suggest that Gua-IL forms a micellar kind of self aggregation above a certain concentration (>=1 mM), which instigates this compaction process. This study divulges the specific details of DNA compaction mechanism by a new class of compaction agent, which is highly biodegradable and eco friendly in nature.

Modeling of Abrasion and Crushing of Unbound Granular Materials During Compaction

NASA Astrophysics Data System (ADS)

Ocampo, Manuel S.; Caicedo, Bernardo

2009-06-01

Unbound compacted granular materials are commonly used in engineering structures as layers in road pavements, railroad beds, highway embankments, and foundations. These structures are generally subjected to dynamic loading by construction operations, traffic and wheel loads. These repeated or cyclic loads cause abrasion and crushing of the granular materials. Abrasion changes a particle's shape, and crushing divides the particle into a mixture of many small particles of varying sizes. Particle breakage is important because the mechanical and hydraulic properties of these materials depend upon their grain size distribution. Therefore, it is important to evaluate the evolution of the grain size distribution of these materials. In this paper an analytical model for unbound granular materials is proposed in order to evaluate particle crushing of gravels and soils subjected to cyclic loads. The model is based on a Markov chain which describes the development of grading changes in the material as a function of stress levels. In the model proposed, each particle size is a state in the system, and the evolution of the material is the movement of particles from one state to another in n steps. Each step is a load cycle, and movement between states is possible with a transition probability. The crushing of particles depends on the mechanical properties of each grain and the packing density of the granular material. The transition probability was calculated using both the survival probability defined by Weibull and the compressible packing model developed by De Larrard. Material mechanical properties are considered using the Weibull probability theory. The size and shape of the grains, as well as the method of processing the packing density are considered using De Larrard's model. Results of the proposed analytical model show a good agreement with the experimental tests carried out using the gyratory compaction test.

Predicting the Dynamic Crushing Response of a Composite Honeycomb Energy Absorber Using Solid-Element-Based Models in LS-DYNA

NASA Technical Reports Server (NTRS)

Jackson, Karen E.

2010-01-01

This paper describes an analytical study that was performed as part of the development of an externally deployable energy absorber (DEA) concept. The concept consists of a composite honeycomb structure that can be stowed until needed to provide energy attenuation during a crash event, much like an external airbag system. One goal of the DEA development project was to generate a robust and reliable Finite Element Model (FEM) of the DEA that could be used to accurately predict its crush response under dynamic loading. The results of dynamic crush tests of 50-, 104-, and 68-cell DEA components are presented, and compared with simulation results from a solid-element FEM. Simulations of the FEM were performed in LS-DYNA(Registered TradeMark) to compare the capabilities of three different material models: MAT 63 (crushable foam), MAT 26 (honeycomb), and MAT 126 (modified honeycomb). These material models are evaluated to determine if they can be used to accurately predict both the uniform crushing and final compaction phases of the DEA for normal and off-axis loading conditions

On the mechanical modeling of tensegrity columns subject to impact loading

NASA Astrophysics Data System (ADS)

Amendola, Ada; Favata, Antonino; Micheletti, Andrea

2018-04-01

A physical model of a tensegrity columns is additively manufactured in a titanium alloy. After removing sacrificial supports, such a model is post-tensioned through suitable insertion of Spectra cables. The wave dynamics of the examined system is first experimentally investigated by recording the motion through high-speed cameras assisted by a digital image correlation algorithm, which returns time-histories of the axial displacements of the bases of each prism of the column. Next, the experimental response is mechanically simulated by means of two different models: a stick-and-spring model accounting for the presence of bending-stiff connections between the 3D-printed elements (mixed bending-stretching response), and a tensegrity model accounting for a purely stretching response. The comparison of theory and experiment reveals that the presence of bending-stiff connections weakens the nonlinearity of the wave dynamics of the system. A stretching-dominated response instead supports highly compact solitary waves in the presence of small prestress and negligible bending stiffness of connections.

Modeling of the multilevel conduction characteristics and fatigue profile of Ag/La1/3Ca2/3MnO3/Pt structures using a compact memristive approach

NASA Astrophysics Data System (ADS)

Miranda, E.; Román Acevedo, W.; Rubi, D.; Lüders, U.; Granell, P.; Suñé, J.; Levy, P.

2017-05-01

The hysteretic conduction characteristics and fatigue profile of La1/3Ca2/3MnO3 (LCMO)-based memristive devices were investigated. The oxide films were grown by pulsed laser deposition (PLD) and sandwiched between Ag and Pt electrodes. The devices exhibit bipolar resistive switching (RS) effect with well-defined intermediate conduction states that arise from partial SET and RESET events. The current-voltage curves are modeled and simulated using a compact memristive approach. Two equations are considered: one for the electron transport based on the double-diode equation and the other for the memory state of the device driven by the play operator with logistic ridge functions. An expression that accounts for the remnant resistance of the device is obtained after simplifying the model equations in the low-voltage limit. The role played by the power dissipation in the LCMO reset dynamics as well as the asymmetrical reduction of the resistance window caused by long trains of switching pulses are discussed.

An implementation of sensor-based force feedback in a compact laparoscopic surgery robot.

PubMed

Lee, Duk-Hee; Choi, Jaesoon; Park, Jun-Woo; Bach, Du-Jin; Song, Seung-Jun; Kim, Yoon-Ho; Jo, Yungho; Sun, Kyung

2009-01-01

Despite the rapid progress in the clinical application of laparoscopic surgery robots, many shortcomings have not yet been fully overcome, one of which is the lack of reliable haptic feedback. This study implemented a force-feedback structure in our compact laparoscopic surgery robot. The surgery robot is a master-slave configuration robot with 5 DOF (degree of freedom corresponding laparoscopic surgical motion. The force-feedback implementation was made in the robot with torque sensors and controllers installed in the pitch joint of the master and slave robots. A simple dynamic model of action-reaction force in the slave robot was used, through which the reflective force was estimated and fed back to the master robot. The results showed the system model could be identified with significant fidelity and the force feedback at the master robot was feasible. However, the qualitative human assessment of the fed-back force showed only limited level of object discrimination ability. Further developments are underway with this result as a framework.

A Linear Electromagnetic Piston Pump

NASA Astrophysics Data System (ADS)

Hogan, Paul H.

Advancements in mobile hydraulics for human-scale applications have increased demand for a compact hydraulic power supply. Conventional designs couple a rotating electric motor to a hydraulic pump, which increases the package volume and requires several energy conversions. This thesis investigates the use of a free piston as the moving element in a linear motor to eliminate multiple energy conversions and decrease the overall package volume. A coupled model used a quasi-static magnetic equivalent circuit to calculate the motor inductance and the electromagnetic force acting on the piston. The force was an input to a time domain model to evaluate the mechanical and pressure dynamics. The magnetic circuit model was validated with finite element analysis and an experimental prototype linear motor. The coupled model was optimized using a multi-objective genetic algorithm to explore the parameter space and maximize power density and efficiency. An experimental prototype linear pump coupled pistons to an off-the-shelf linear motor to validate the mechanical and pressure dynamics models. The magnetic circuit force calculation agreed within 3% of finite element analysis, and within 8% of experimental data from the unoptimized prototype linear motor. The optimized motor geometry also had good agreement with FEA; at zero piston displacement, the magnetic circuit calculates optimized motor force within 10% of FEA in less than 1/1000 the computational time. This makes it well suited to genetic optimization algorithms. The mechanical model agrees very well with the experimental piston pump position data when tuned for additional unmodeled mechanical friction. Optimized results suggest that an improvement of 400% of the state of the art power density is attainable with as high as 85% net efficiency. This demonstrates that a linear electromagnetic piston pump has potential to serve as a more compact and efficient supply of fluid power for the human scale.

PREDICTION OF MALIGNANT BREAST LESIONS FROM MRI FEATURES: A COMPARISON OF ARTIFICIAL NEURAL NETWORK AND LOGISTIC REGRESSION TECHNIQUES

PubMed Central

McLaren, Christine E.; Chen, Wen-Pin; Nie, Ke; Su, Min-Ying

2009-01-01

Rationale and Objectives Dynamic contrast enhanced MRI (DCE-MRI) is a clinical imaging modality for detection and diagnosis of breast lesions. Analytical methods were compared for diagnostic feature selection and performance of lesion classification to differentiate between malignant and benign lesions in patients. Materials and Methods The study included 43 malignant and 28 benign histologically-proven lesions. Eight morphological parameters, ten gray level co-occurrence matrices (GLCM) texture features, and fourteen Laws’ texture features were obtained using automated lesion segmentation and quantitative feature extraction. Artificial neural network (ANN) and logistic regression analysis were compared for selection of the best predictors of malignant lesions among the normalized features. Results Using ANN, the final four selected features were compactness, energy, homogeneity, and Law_LS, with area under the receiver operating characteristic curve (AUC) = 0.82, and accuracy = 0.76. The diagnostic performance of these 4-features computed on the basis of logistic regression yielded AUC = 0.80 (95% CI, 0.688 to 0.905), similar to that of ANN. The analysis also shows that the odds of a malignant lesion decreased by 48% (95% CI, 25% to 92%) for every increase of 1 SD in the Law_LS feature, adjusted for differences in compactness, energy, and homogeneity. Using logistic regression with z-score transformation, a model comprised of compactness, NRL entropy, and gray level sum average was selected, and it had the highest overall accuracy of 0.75 among all models, with AUC = 0.77 (95% CI, 0.660 to 0.880). When logistic modeling of transformations using the Box-Cox method was performed, the most parsimonious model with predictors, compactness and Law_LS, had an AUC of 0.79 (95% CI, 0.672 to 0.898). Conclusion The diagnostic performance of models selected by ANN and logistic regression was similar. The analytic methods were found to be roughly equivalent in terms of predictive ability when a small number of variables were chosen. The robust ANN methodology utilizes a sophisticated non-linear model, while logistic regression analysis provides insightful information to enhance interpretation of the model features. PMID:19409817

Quantification of cancellous bone-compaction due to DHS Blade insertion and influence upon cut-out resistance.

PubMed

Windolf, Markus; Muths, Raphael; Braunstein, Volker; Gueorguiev, Boyko; Hänni, Markus; Schwieger, Karsten

2009-01-01

Compaction of cancellous bone is believed to prevent cut-out. This in vitro study quantified the compaction in the femoral head due to insertion of a dynamic hip screw-blade with and without predrilling and investigated the resulting implant anchorage under cyclic loading. Eight pairs of human cadaveric femoral heads were instrumented with a dynamic hip screw-blade made of Polyetheretherketon. Pairwise instrumentation was performed either with or without predrilling the specimens. CT scanning was performed before and after implantation, to measure bone-compaction. Subsequently the implant was removed and a third scan was performed to analyze the relaxation of the bone structure. Commercial implants were reinserted and the specimens were cyclically loaded until onset of cut-out occurred. The bone-implant interface was monitored by means of fluoroscopic imaging throughout the experiment. Paired t-tests were performed to identify differences regarding compaction, relaxation and cycles to failure. Bone density in the surrounding of the implant increased about 30% for the non-predrilled and 20% for the predrilled group when inserting the implant. After implant removal the predrilled specimens fully relaxed; the non-predrilled group showed about 10% plastic deformation. No differences were found regarding cycles to failure (P=0.32). Significant bone-compaction due to blade insertion was verified. Even though compaction was lower when predrilling the specimens, mainly elastic deformation was present, which is believed to primarily enhance the implant anchorage. Cyclic loading tests confirmed this thesis. The importance of the implantation technique with regard to predrilling is therefore decreased.

Generalized Recurrent Neural Network accommodating Dynamic Causal Modeling for functional MRI analysis.

PubMed

Wang, Yuan; Wang, Yao; Lui, Yvonne W

2018-05-18

Dynamic Causal Modeling (DCM) is an advanced biophysical model which explicitly describes the entire process from experimental stimuli to functional magnetic resonance imaging (fMRI) signals via neural activity and cerebral hemodynamics. To conduct a DCM study, one needs to represent the experimental stimuli as a compact vector-valued function of time, which is hard in complex tasks such as book reading and natural movie watching. Deep learning provides the state-of-the-art signal representation solution, encoding complex signals into compact dense vectors while preserving the essence of the original signals. There is growing interest in using Recurrent Neural Networks (RNNs), a major family of deep learning techniques, in fMRI modeling. However, the generic RNNs used in existing studies work as black boxes, making the interpretation of results in a neuroscience context difficult and obscure. In this paper, we propose a new biophysically interpretable RNN built on DCM, DCM-RNN. We generalize the vanilla RNN and show that DCM can be cast faithfully as a special form of the generalized RNN. DCM-RNN uses back propagation for parameter estimation. We believe DCM-RNN is a promising tool for neuroscience. It can fit seamlessly into classical DCM studies. We demonstrate face validity of DCM-RNN in two principal applications of DCM: causal brain architecture hypotheses testing and effective connectivity estimation. We also demonstrate construct validity of DCM-RNN in an attention-visual experiment. Moreover, DCM-RNN enables end-to-end training of DCM and representation learning deep neural networks, extending DCM studies to complex tasks. Copyright © 2018 Elsevier Inc. All rights reserved.

INTO THE LAIR: GRAVITATIONAL-WAVE SIGNATURES OF DARK MATTER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Macedo, Caio F. B.; Cardoso, Vitor; Crispino, Luis C. B.

The nature and properties of dark matter (DM) are both outstanding issues in physics. Besides clustering in halos, the universal character of gravity implies that self-gravitating compact DM configurations-predicted by various models-might be spread throughout the universe. Their astrophysical signature can be used to probe fundamental particle physics, or to test alternative descriptions of compact objects in active galactic nuclei. Here, we discuss the most promising dissection tool of such configurations: the inspiral of a compact stellar-size object and consequent gravitational-wave (GW) emission. The inward motion of this ''test probe'' encodes unique information about the nature of the supermassive configuration.more » When the probe travels through some compact region we show, within a Newtonian approximation, that the quasi-adiabatic inspiral is mainly driven by DM accretion and by dynamical friction, rather than by radiation reaction. When accretion dominates, the frequency and amplitude of the GW signal produced during the latest stages of the inspiral are nearly constant. In the exterior region we study a model in which the inspiral is driven by GW and scalar-wave emission, described at a fully relativistic level. Resonances in the energy flux appear whenever the orbital frequency matches the effective mass of the DM particle, corresponding to the excitation of the central object's quasinormal frequencies. Unexpectedly, these resonances can lead to large dephasing with respect to standard inspiral templates, to such an extent as to prevent detection with matched filtering techniques. We discuss some observational consequences of these effects for GW detection.« less

Variability-aware compact modeling and statistical circuit validation on SRAM test array

NASA Astrophysics Data System (ADS)

Qiao, Ying; Spanos, Costas J.

2016-03-01

Variability modeling at the compact transistor model level can enable statistically optimized designs in view of limitations imposed by the fabrication technology. In this work we propose a variability-aware compact model characterization methodology based on stepwise parameter selection. Transistor I-V measurements are obtained from bit transistor accessible SRAM test array fabricated using a collaborating foundry's 28nm FDSOI technology. Our in-house customized Monte Carlo simulation bench can incorporate these statistical compact models; and simulation results on SRAM writability performance are very close to measurements in distribution estimation. Our proposed statistical compact model parameter extraction methodology also has the potential of predicting non-Gaussian behavior in statistical circuit performances through mixtures of Gaussian distributions.

Advances in mosquito dynamics modeling

NASA Astrophysics Data System (ADS)

Wijaya, Karunia Putra; Götz, Thomas; Soewono, Edy

2016-11-01

It is preliminarily known that Aedes mosquitoes are very close to humans and their dwellings, also give rises to a broad spectrum of diseases: dengue, yellow fever, chikungunya. In this paper, we explore a multi-age-class model for mosquito population secondarily classified into indoor-outdoor dynamics. We accentuate a novel design for the model in which periodicity of the affecting time-varying environmental condition is taken into account. Application of the optimal control with collocated measure as apposed to the widely-used prototypic smooth time-continuous measure is also considered. Using two approaches: least-square and maximum likelihood, we estimate several involving undetermined parameters. We analyze the model enforceability to biological point of view such as existence, uniqueness, positivity and boundedness of solution trajectory, also existence and stability of (non)trivial periodic solution(s) by means of the basic mosquito offspring number. Some numerical tests are brought along at the rest of the paper as a compact realistic visualization of the model.

Polymer model with Epigenetic Recoloring Reveals a Pathway for the de novo Establishment and 3D Organization of Chromatin Domains

NASA Astrophysics Data System (ADS)

Michieletto, D.; Orlandini, E.; Marenduzzo, D.

2016-10-01

One of the most important problems in development is how epigenetic domains can first be established, and then maintained, within cells. To address this question, we propose a framework that couples three-dimensional chromatin folding dynamics to a "recoloring" process modeling the writing of epigenetic marks. Because many intrachromatin interactions are mediated by bridging proteins, we consider a "two-state" model with self-attractive interactions between two epigenetic marks that are alike (either active or inactive). This model displays a first-order-like transition between a swollen, epigenetically disordered phase and a compact, epigenetically coherent chromatin globule. If the self-attraction strength exceeds a threshold, the chromatin dynamics becomes glassy, and the corresponding interaction network freezes. By modifying the epigenetic read-write process according to more biologically inspired assumptions, our polymer model with recoloring recapitulates the ultrasensitive response of epigenetic switches to perturbations and accounts for long-lived multidomain conformations, strikingly similar to the topologically associating domains observed in eukaryotic chromosomes.

Modeling of charged anisotropic compact stars in general relativity

NASA Astrophysics Data System (ADS)

Dayanandan, Baiju; Maurya, S. K.; T, Smitha T.

2017-06-01

A charged compact star model has been determined for anisotropic fluid distribution. We have solved the Einstein-Maxwell field equations to construct the charged compact star model by using the radial pressure, the metric function e^{λ} and the electric charge function. The generic charged anisotropic solution is verified by exploring different physical conditions like causality condition, mass-radius relation and stability of the solution (via the adiabatic index, TOV equations and the Herrera cracking concept). It is observed that the present charged anisotropic compact star model is compatible with the star PSR 1937+21. Moreover, we also presented the EOS ρ = f(p) for the present charged compact star model.

Compaction and High-Pressure Response of Granular Tantalum Oxide

NASA Astrophysics Data System (ADS)

Vogler, Tracy; Root, Seth; Knudson, Marcus; Thornhill, Tom; Reinhart, William

2015-06-01

The dynamic behavior of nearly fully-dense and porous tantalum oxide (Ta2O5) is studied. Two particle morphologies are used to obtain two distinct initial tap densities, which correspond to approximately 40% and 15% of crystalline density. The response is characterized from low pressures, which result in incomplete compaction, to very high pressures where the thermal component of the EOS dominates. Issues related to a possible phase transformation along the Hugoniot and to establishing reasonable error bars on the experimental data will be discussed. The suitability of continuum and mesoscale models to capture the experimental results will be examined. Sandia National Laboratories is a multi-program laboratory operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Company, for the U.S. Department of Energy's National Nuclear Security Administration under Contract DE-AC04-94AL85000.

Convection-diffusion effects in marathon race dynamics

NASA Astrophysics Data System (ADS)

Rodriguez, E.; Espinosa-Paredes, G.; Alvarez-Ramirez, J.

2014-01-01

In the face of the recent terrorist attack event on the 2013 Boston Marathon, the increasing participation of recreational runners in large marathon races has imposed important logistical and safety issues for organizers and city authorities. An accurate understanding of the dynamics of the marathon pack along the race course can provide important insights for improving safety and performance of these events. On the other hand, marathon races can be seen as a model of pedestrian movement under confined conditions. This work used data of the 2011 Chicago Marathon event for modeling the dynamics of the marathon pack from the corral zone to the finish line. By considering the marathon pack as a set of particles moving along the race course, the dynamics are modeled as a convection-diffusion partial differential equation with position-dependent mean velocity and diffusion coefficient. A least-squares problem is posed and solved with optimization techniques for fitting field data from the 2011 Chicago Marathon. It was obtained that the mean pack velocity decreases while the diffusion coefficient increases with distance. This means that the dispersion rate of the initially compact marathon pack increases as the marathon race evolves along the race course.

Multi-scale individual-based model of microbial and bioconversion dynamics in aerobic granular sludge.

PubMed

Xavier, Joao B; De Kreuk, Merle K; Picioreanu, Cristian; Van Loosdrecht, Mark C M

2007-09-15

Aerobic granular sludge is a novel compact biological wastewater treatment technology for integrated removal of COD (chemical oxygen demand), nitrogen, and phosphate charges. We present here a multiscale model of aerobic granular sludge sequencing batch reactors (GSBR) describing the complex dynamics of populations and nutrient removal. The macro scale describes bulk concentrations and effluent composition in six solutes (oxygen, acetate, ammonium, nitrite, nitrate, and phosphate). A finer scale, the scale of one granule (1.1 mm of diameter), describes the two-dimensional spatial arrangement of four bacterial groups--heterotrophs, ammonium oxidizers, nitrite oxidizers, and phosphate accumulating organisms (PAO)--using individual based modeling (IbM) with species-specific kinetic models. The model for PAO includes three internal storage compounds: polyhydroxyalkanoates (PHA), poly phosphate, and glycogen. Simulations of long-term reactor operation show how the microbial population and activity depends on the operating conditions. Short-term dynamics of solute bulk concentrations are also generated with results comparable to experimental data from lab scale reactors. Our results suggest that N-removal in GSBR occurs mostly via alternating nitrification/denitrification rather than simultaneous nitrification/denitrification, supporting an alternative strategy to improve N-removal in this promising wastewater treatment process.

Quantification of groundwater extraction-induced subsidence in the Mekong delta, Vietnam: 3D process-based numerical modeling

NASA Astrophysics Data System (ADS)

Minderhoud, Philip S. J.; Erkens, Gilles; Pham, Hung V.; Bui, Vuong T.; Kooi, Henk; Erban, Laura; Stouthamer, Esther

2017-04-01

The demand for groundwater in the Vietnamese Mekong delta has steadily risen over the past decades. As a result, hydraulic heads in the aquifers dropped on average 0.3-0.7 m/yr-1, potentially causing aquifer-system compaction. At present, the delta is experiencing subsidence rates up to several centimeters per year that outpace global sea level rise by an order of magnitude. However, the exact contribution of groundwater extraction to total subsidence in the delta has not been assessed yet. The objective of our study is to quantify the impact of 25 years of groundwater extraction on subsidence. We built a 3D numerical hydrogeological model comprising the multi-aquifer system of the entire Vietnamese Mekong delta. Groundwater dynamics in the aquifers was simulated over the past quarter-century based on the known extraction history and measured time series of hydraulic head. Subsequently, we calculated corresponding aquifer system compaction using a coupled land subsidence module, which includes a direct, elastic component and a secular, viscous component (i.e. creep). The hydrogeological model is able to reproduce the measured drawdowns in the multi-aquifer system of the past 25 years. Corresponding subsidence rates resulting from aquifer system compaction show a gradual increase over the past two decades to significant annual rates up to several centimeters. Groundwater extraction seems to be a dominant driver of subsidence in the delta, but does not explain the total measured subsidence. This process-based modeling approach can be used to quantify groundwater extraction-induced subsidence for coastal areas and at delta-scale worldwide.

Analysis of ramming settlement based on dissipative principle

NASA Astrophysics Data System (ADS)

Fu, Hao; Yu, Kaining; Chen, Changli; Li, Changrong; Wang, Xiuli

2018-03-01

The deformation of soil is a kind of dissipative structure under the action of dynamic compaction. The macroscopic performance of soil to steady state evolution is the change of ramming settlement in the process of dynamic compaction. based on the existing solution of dynamic compaction boundary problem, calculated ramming effectiveness (W) and ramming efficiency coefficient( η ). For the same soil, ramming efficiency coefficient is related to ramming factor λ = M/ρr3. By using the dissipative principle to analyze the law between ramming settlements and ramming times under different ramming energy and soil density, come to the conclusion that: Firstly, with the increase of ramming numbers, ramming settlement tends to a stable value, ramming effectiveness coefficient tends to a stable value. Secondly, under the condition of the same single ramming energy, the soil density of before ramming has effect on ramming effectiveness of previous ramming, almost no effect on ramming effectiveness of subsequent ramming. Thirdly, under the condition of the same soil density, different ramming energy correspond to different steady-state, the cumulative ramming settlement and steady-state increase with ramming energy.

Experiment Analysis and Modelling of Compaction Behaviour of Ag60Cu30Sn10 Mixed Metal Powders

NASA Astrophysics Data System (ADS)

Zhou, Mengcheng; Huang, Shangyu; Liu, Wei; Lei, Yu; Yan, Shiwei

2018-03-01

A novel process method combines powder compaction and sintering was employed to fabricate thin sheets of cadmium-free silver based filler metals, the compaction densification behaviour of Ag60Cu30Sn10 mixed metal powders was investigated experimentally. Based on the equivalent density method, the density-dependent Drucker-Prager Cap (DPC) model was introduced to model the powder compaction behaviour. Various experiment procedures were completed to determine the model parameters. The friction coefficients in lubricated and unlubricated die were experimentally determined. The determined material parameters were validated by experiments and numerical simulation of powder compaction process using a user subroutine (USDFLD) in ABAQUS/Standard. The good agreement between the simulated and experimental results indicates that the determined model parameters are able to describe the compaction behaviour of the multicomponent mixed metal powders, which can be further used for process optimization simulations.

Experimental Study on Vacuum Dynamic Consolidation Treatment of Soft Soil Foundation

NASA Astrophysics Data System (ADS)

Fu-lai, Ni; Xin, Wen; Xiao-bin, Zhang; Wei, Li

2017-11-01

In view of the deficiency of the saturated silt clay foundation reinforced by the dynamic consolidation method, combination the project of soft foundation treatment test area in Tangshan, the reaserch analysed indexes, included groundwater level, pore water pressure, settlement about soil layer and so on, by use of field tests and indoor geotechnical tests, The results showed that the whole reinforcement effect with vacuum dynamic compaction method to blow fill foundation is obvious, due to the result of vacuum precipitation, generally, the excess pore water pressure can be dissipated by 90% above in 2 days around and the effective compaction coefficient can reached more than 0.9,the research work in soft foundation treatment engineering provide a new method and thought to similar engineering.

CoMoDo: identifying dynamic protein domains based on covariances of motion.

PubMed

Wieninger, Silke A; Ullmann, G Matthias

2015-06-09

Most large proteins are built of several domains, compact units which enable functional protein motions. Different domain assignment approaches exist, which mostly rely on concepts of stability, folding, and evolution. We describe the automatic assignment method CoMoDo, which identifies domains based on protein dynamics. Covariances of atomic fluctuations, here calculated by an Elastic Network Model, are used to group residues into domains of different hierarchical levels. The so-called dynamic domains facilitate the study of functional protein motions involved in biological processes like ligand binding and signal transduction. By applying CoMoDo to a large number of proteins, we demonstrate that dynamic domains exhibit features absent in the commonly assigned structural domains, which can deliver insight into the interactions between domains and between subunits of multimeric proteins. CoMoDo is distributed as free open source software at www.bisb.uni-bayreuth.de/CoMoDo.html .

Acquisition of Robotic Giant-swing Motion Using Reinforcement Learning and Its Consideration of Motion Forms

NASA Astrophysics Data System (ADS)

Sakai, Naoki; Kawabe, Naoto; Hara, Masayuki; Toyoda, Nozomi; Yabuta, Tetsuro

This paper argues how a compact humanoid robot can acquire a giant-swing motion without any robotic models by using Q-Learning method. Generally, it is widely said that Q-Learning is not appropriated for learning dynamic motions because Markov property is not necessarily guaranteed during the dynamic task. However, we tried to solve this problem by embedding the angular velocity state into state definition and averaging Q-Learning method to reduce dynamic effects, although there remain non-Markov effects in the learning results. The result shows how the robot can acquire a giant-swing motion by using Q-Learning algorithm. The successful acquired motions are analyzed in the view point of dynamics in order to realize a functionally giant-swing motion. Finally, the result shows how this method can avoid the stagnant action loop at around the bottom of the horizontal bar during the early stage of giant-swing motion.

QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin

PubMed Central

Savol, Andrej J.; Burger, Virginia M.; Agarwal, Pratul K.; Ramanathan, Arvind; Chennubhotla, Chakra S.

2011-01-01

Motivation: Molecular dynamics (MD) simulations have dramatically improved the atomistic understanding of protein motions, energetics and function. These growing datasets have necessitated a corresponding emphasis on trajectory analysis methods for characterizing simulation data, particularly since functional protein motions and transitions are often rare and/or intricate events. Observing that such events give rise to long-tailed spatial distributions, we recently developed a higher-order statistics based dimensionality reduction method, called quasi-anharmonic analysis (QAA), for identifying biophysically-relevant reaction coordinates and substates within MD simulations. Further characterization of conformation space should consider the temporal dynamics specific to each identified substate. Results: Our model uses hierarchical clustering to learn energetically coherent substates and dynamic modes of motion from a 0.5 μs ubiqutin simulation. Autoregressive (AR) modeling within and between states enables a compact and generative description of the conformational landscape as it relates to functional transitions between binding poses. Lacking a predictive component, QAA is extended here within a general AR model appreciative of the trajectory's temporal dependencies and the specific, local dynamics accessible to a protein within identified energy wells. These metastable states and their transition rates are extracted within a QAA-derived subspace using hierarchical Markov clustering to provide parameter sets for the second-order AR model. We show the learned model can be extrapolated to synthesize trajectories of arbitrary length. Contact: ramanathana@ornl.gov; chakracs@pitt.edu PMID:21685101

The Extreme Spin of the Black Hole in Cygnus X-1

NASA Technical Reports Server (NTRS)

Gou, Lijun; McClintock, Jeffre E.; Reid, Mark J.; Orosz, Jerome A.; Steiner, James F.; Narayan, Ramesh; Xiang, Jingen; Remillard, Ronald A.; Arnaud, Keith A.; Davis, Shane W.

2005-01-01

The compact primary in the X-ray binary Cygnus X-1 was the first black hole to be established via dynamical observatIOns. We have recently determined accurate values for its mass and distance, and for the orbital inclination angle of the binary. Building on these.results, which are based on our favored (asynchronous) dynamical model, we have measured the radius of the inner edge of the black hole's accretion disk by fitting its thermal continuum.spectrum to a fully relativistic model of a thin accretion disk. Assuming that the spin axis of the black hole is aligned with the orbital angular momentum vector, we have determined that Cygnus X-I contains a near-extreme Kerr black hole with a spin parameter a* > 0.95 (3(sigma)). For a less probable (synchronous) dynamIcal model, we find a* > 0.92 (3(sigma)). In our analysis, we include the uncertainties in black hole mass orbital inclination angle and distance, and we also include the uncertainty in the calibration of the absolute flux via the Crab. These four sources of uncertainty totally dominate the error budget. The uncertainties introduced by the thin-disk model we employ are particularly small in this case given the extreme spin of the black hole and the disk's low luminosity.

A Coupled Aeroelastic Model for Launch Vehicle Stability Analysis

NASA Technical Reports Server (NTRS)

Orr, Jeb S.

2010-01-01

A technique for incorporating distributed aerodynamic normal forces and aeroelastic coupling effects into a stability analysis model of a launch vehicle is presented. The formulation augments the linear state-space launch vehicle plant dynamics that are compactly derived as a system of coupled linear differential equations representing small angular and translational perturbations of the rigid body, nozzle, and sloshing propellant coupled with normal vibration of a set of orthogonal modes. The interaction of generalized forces due to aeroelastic coupling and thrust can be expressed as a set of augmenting non-diagonal stiffness and damping matrices in modal coordinates with no penalty on system order. While the eigenvalues of the structural response in the presence of thrust and aeroelastic forcing can be predicted at a given flight condition independent of the remaining degrees of freedom, the coupled model provides confidence in closed-loop stability in the presence of rigid-body, slosh, and actuator dynamics. Simulation results are presented that characterize the coupled dynamic response of the Ares I launch vehicle and the impact of aeroelasticity on control system stability margins.

Modeling of porosity loss during compaction and cementation of sandstones

NASA Astrophysics Data System (ADS)

Lemée, Claire; Guéguen, Yves

1996-10-01

Irreversible inelastic processes are responsible for mechanical and chemical compaction of sedimentary rocks at the time of burying. Our purpose is to describe the inelastic response of the rock at large time scales. In order to do this, we build a model that describes how porosity progressively decreases at depth. We use a previous geometrical model for the compaction process of a sandstone by grain interpenetration that is restricted to the case of mass conservation. In addition, we introduce a compaction equilibrium concept. Solid grains can support stresses up to a critical effective stress, σc, before plastic flow occurs. This critical stress depends on temperature and is derived from the pressure-solution deformation law. Pressure solution is the plastic deformation mechanism implemented during compaction. Our model predicts a porosity destruction at a depth of about 3 km. This model has the property to define a range of compaction curves. We investigate the sensitivity of the model to the main input parameters: liquid film thickness, grain size, temperature gradient, and activation energy.

Liquefaction under drained condition, from the lab to reality ?

NASA Astrophysics Data System (ADS)

Clément, Cécile; Aharonov, Einat; Stojanova, Menka; Toussaint, Renaud

2015-04-01

Liquefaction constitutes a significant natural hazard in relation to earthquakes and landslides. This effect can cause buildings to tilt or sink into the soil, mud-volcanoes, floatation of buried objects, long-runout landslides, etc. In this work we present a new understanding regarding the mechanism by which buildings sink and tilt during liquefaction caused by earthquakes. Conventional understanding of liquefaction explains most observed cases as occurring in an undrained, under-compacted, layer of sandy soil saturated with water [1]: According to that understanding, the under compacted sandy layer has the tendency to compact when a load is applied. In our case the load comes from ground shaking during an earthquake. When the soil compacts, the fluid pore pressure rises. Because in undrained conditions the fluid cannot flow out, the pore pressure builds up. The weight of buildings is in this case transferred from the grains of the soil to the pore water. The soil loses its rigidity and it flows like a liquid. From this model scientists made theoretical and empirical laws for geotechnical use and buildings construction. Despite the success of this conventional model in many cases, liquefied soils were also observed under drained conditions, and in previously compacted soils, which doesn't agree with the assumption of the model quoted above. One of the famous liquefaction events is the Kobe port destruction during the 1995 earthquake. A simple calculation of the Deborah number following Goren et al ([2][3]) shows that the undrained constraint was not met below the Kobe port during the 1995 earthquake. We propose another model, of liquefaction in drained granular media. According to our model the mere presence of water in granular media is enough to cause liquefaction during an earthquake, provided that the water reaches close to the surface. Our computations are based on the buoyancy force, and we take into account the static fluid pressure only. For small horizontal shaking our model predicts that the soil remains rigid. Under stronger accelerations, some of the particles, which constitute the medium, slide past each other, and the medium slowly rearranges. Yet, in this regime of shaking, the shaking is insufficient to cause the building to slide. The building sinks simply due to hydrostatic considerations, and since it is a static object in a dynamically rearranging medium. This is the case we call liquefaction. Eventually, for even stronger accelerations, both the particles and the building can slide and we predict convective movement. To test this model we run numerical simulations (granular dynamics DEM algorithm) and laboratory experiments. The numerical experiments do not include pore pressure, and only simulate buoyancy effects of water. The controlling parameters are the amplitude and frequency of the shaking, and the water level. With a saturated medium, experiments and simulations display three different behaviors: rigid, liquefaction, and convection, in agreement with our theoretical model. The peak ground acceleration (PGA) is the decisive parameter. It is important to note that for dry media and for a case when the building is fully submerged underwater, both in experiments and in simulations, the liquefaction effect disappears. Based on our work we suggest that elevated pore pressure conditions are not necessary for inducing liquefaction, and that liquefaction can occur under well drained and highly compacted soils, in situations previously considered to be safe from liquefaction. Références [1] Chi-Yuen Wang and Michael Manga. Earthquakes and Water, volume 114. Springer Verlag, 2010. [2] L. Goren, E. Aharonov, D. Sparks, and R. Toussaint. Pore pressure evolution in deforming granu- lar material : A general formulation and the infinitely stiff approximation. Journal of Geophysical Research, 115(B9), Sep 2010. [3] Liran Goren, Einat Aharonov, David Sparks, and Renaud Toussaint. The mechanical coupling of fluid-filled granular material under shear. Pure and applied geophysics, 168(12) :2289-2323, 2011.

New single-aircraft integrated atmospheric observation capabilities

NASA Astrophysics Data System (ADS)

Wang, Z.

2011-12-01

Improving current weather and climate model capabilities requires better understandings of many atmospheric processes. Thus, advancing atmospheric observation capabilities has been regarded as the highest imperatives to advance the atmospheric science in the 21st century. Under the NSF CAREER support, we focus on developing new airborne observation capabilities through the developments of new instrumentations and the single-aircraft integration of multiple remote sensors with in situ probes. Two compact Wyoming cloud lidars were built to work together with a 183 GHz microwave radiometer, a multi-beam Wyoming cloud radar and in situ probes for cloud studies. The synergy of these remote sensor measurements allows us to better resolve the vertical structure of cloud microphysical properties and cloud scale dynamics. Together with detailed in situ data for aerosol, cloud, water vapor and dynamics, we developed the most advanced observational capability to study cloud-scale properties and processes from a single aircraft (Fig. 1). A compact Raman lidar was also built to work together with in situ sampling to characterize boundary layer aerosol and water vapor distributions for many important atmospheric processes studies, such as, air-sea interaction and convective initialization. Case studies will be presented to illustrate these new observation capabilities.

A new structural framework for integrating replication protein A into DNA processing machinery

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brosey, Chris A; Yan, Chunli; Tsutakawa, Susan E

2013-01-01

By coupling the protection and organization of ssDNA with the recruitment and alignment of DNA processing factors, Replication Protein A (RPA) lies at the heart of dynamic multi-protein DNA processing machinery. Nevertheless, how RPA manages to coordinate the biochemical functions of its eight domains remains unknown. We examined the structural biochemistry of RPA s DNA binding activity, combining small-angle x-ray and neutron scattering with all-atom molecular dynamics simulations to investigate the architecture of RPA s DNA-binding core. It has been long held that RPA engages ssDNA in three stages, but our data reveal that RPA undergoes two rather than threemore » transitions as it binds ssDNA. In contrast to previous models, RPA is more compact when fully engaged on 20-30 nucleotides of ssDNA than when DNA-free, and there is no evidence for significant population of a highly compacted structure in the initial 8-10 nucleotide binding mode. These results provide a new framework for understanding the integration of ssDNA into DNA processing machinery and how binding partners may manipulate RPA architecture to gain access to the substrate.« less

Well behaved anisotropic compact star models in general relativity

NASA Astrophysics Data System (ADS)

Jasim, M. K.; Maurya, S. K.; Gupta, Y. K.; Dayanandan, B.

2016-11-01

Anisotropic compact star models have been constructed by assuming a particular form of a metric function e^{λ}. We solved the Einstein field equations for determining the metric function e^{ν}. For this purpose we have assumed a physically valid expression of radial pressure (pr). The obtained anisotropic compact star model is representing the realistic compact objects such as PSR 1937 +21. We have done an extensive study about physical parameters for anisotropic models and found that these parameters are well behaved throughout inside the star. Along with these we have also determined the equation of state for compact star which gives the radial pressure is purely the function of density i.e. pr=f(ρ).

Revegetation in abandoned quarries with landfill stabilized waste and gravels: water dynamics and plant growth - a case study

NASA Astrophysics Data System (ADS)

Zhang, Cheng-liang; Feng, Jing-jing; Rong, Li-ming; Zhao, Ting-ning

2017-11-01

Large amounts of quarry wastes are produced during quarrying. Though quarry wastes are commonly used in pavement construction and concrete production, in situ utilization during ecological restoration of abandoned quarries has the advantage of simplicity. In this paper, rock fragments 2-3 cm in size were mixed with landfill stabilized waste (LSW) in different proportions (LSW : gravel, RL), which was called LGM. The water content, runoff and plant growth under natural precipitation were monitored for 2 years using a runoff plot experiment. LGM with a low fraction of LSW was compacted to different degrees to achieve an appropriate porosity; water dynamics and plant growth of compacted LGM were studied in a field experiment. The results showed the following: (1) LGM can be used during restoration in abandoned quarries as growing material for plants. (2) RL had a significant effect on the infiltration and water-holding capacity of LGM and thus influenced the retention of precipitation, water condition and plant growth. LGM with RL ranging from 8:1 to 3:7 was suitable for plant growth, and the target species grew best when RL was 5:5. (3) Compaction significantly enhanced water content of LGM with a low RL of 2:8, but leaf water content of plants was lower or unchanged in the more compacted plots. Moderate compaction was beneficial to the survival and growth of Robinia pseudoacacia L. Platycladus orientalis (L.) Franco and Medicago sativa L. were not significantly affected by compaction, and they grew better under a high degree of compaction, which was disadvantageous for the uppermost layer of vegetation.

Hybrid Configuration of Darrieus and Savonius Rotors for Stand-alone Power Systems

NASA Astrophysics Data System (ADS)

Wakui, Tetsuya; Tanzawa, Yoshiaki; Hashizume, Takumi; Nagao, Toshio

The suitable hybrid configuration of Darrieus lift-type and Savonius drag-type rotors for stand-alone wind turbine-generator systems is discussed using our dynamic simulation model. Two types of hybrid configurations are taken up: Type-A installs the Savonius rotor inside the Darrieus rotor and Type-B installs the Savonius rotor outside the Darrieus rotor. The computed results of the output characteristics and the dynamic behaviors of the system operated at the maximum power coefficient points show that Type-A, which has fine operating behavior to wind speed changes and can be compactly designed because of a shorter rotational shaft, is an effective way for self-controlled stand-alone small-scale systems.

Near transferable phenomenological n-body potentials for noble metals

NASA Astrophysics Data System (ADS)

Pontikis, Vassilis; Baldinozzi, Gianguido; Luneville, Laurence; Simeone, David

2017-09-01

We present a semi-empirical model of cohesion in noble metals with suitable parameters reproducing a selected set of experimental properties of perfect and defective lattices in noble metals. It consists of two short-range, n-body terms accounting respectively for attractive and repulsive interactions, the former deriving from the second moment approximation of the tight-binding scheme and the latter from the gas approximation of the kinetic energy of electrons. The stability of the face centred cubic versus the hexagonal compact stacking is obtained via a long-range, pairwise function of customary use with ionic pseudo-potentials. Lattice dynamics, molecular statics, molecular dynamics and nudged elastic band calculations show that, unlike previous potentials, this cohesion model reproduces and predicts quite accurately thermodynamic properties in noble metals. In particular, computed surface energies, largely underestimated by existing empirical cohesion models, compare favourably with measured values, whereas predicted unstable stacking-fault energy profiles fit almost perfectly ab initio evaluations from the literature. All together the results suggest that this semi-empirical model is nearly transferable.

Near transferable phenomenological n-body potentials for noble metals.

PubMed

Pontikis, Vassilis; Baldinozzi, Gianguido; Luneville, Laurence; Simeone, David

2017-09-06

We present a semi-empirical model of cohesion in noble metals with suitable parameters reproducing a selected set of experimental properties of perfect and defective lattices in noble metals. It consists of two short-range, n-body terms accounting respectively for attractive and repulsive interactions, the former deriving from the second moment approximation of the tight-binding scheme and the latter from the gas approximation of the kinetic energy of electrons. The stability of the face centred cubic versus the hexagonal compact stacking is obtained via a long-range, pairwise function of customary use with ionic pseudo-potentials. Lattice dynamics, molecular statics, molecular dynamics and nudged elastic band calculations show that, unlike previous potentials, this cohesion model reproduces and predicts quite accurately thermodynamic properties in noble metals. In particular, computed surface energies, largely underestimated by existing empirical cohesion models, compare favourably with measured values, whereas predicted unstable stacking-fault energy profiles fit almost perfectly ab initio evaluations from the literature. All together the results suggest that this semi-empirical model is nearly transferable.

Moisture desorption in mechanically masticated fuels: effects of particle fracturing and fuelbed compaction

Treesearch

Jesse K. Kreye; J.Morgan Varner; Eric E. Knapp

2012-01-01

Mechanical mastication is increasingly used as a wildland fuel treatment, reducing standing trees and shrubs to compacted fuelbeds of fractured woody fuels. One major shortcoming in our understanding of these fuelbeds is how particle fracturing influences moisture gain or loss, a primary determinant of fire behaviour. To better understand fuel moisture dynamics, we...

Effect of Soft Phase on Magnetic Properties of Bulk Sm-Co/alpha-Fe Nanocomposite Magnets (Postprint)

DTIC Science & Technology

2012-11-01

plasma sintering , and warm compaction [4][5]–[9]. In our previous study [10], bulk Sm–Co –Fe nanocomposite magnets were fabricated by hot pressing of...no. 5, pp. 2974–2976, Jul. 2003. [8] T. Saito and H. Miyoshi, “Magnetic properties of Sm5Fe17/Fe com- posite magnets produces by spark plasma ...Fe and Fe-Co. Bulk composite magnets have been prepared using compaction techniques such as hot pressing/deforma- tion, dynamic shock compaction, spark

Haemoglobin content modulated deformation dynamics of red blood cells on a compact disc.

PubMed

Kar, Shantimoy; Ghosh, Uddipta; Maiti, Tapas Kumar; Chakraborty, Suman

2015-12-21

We investigate the deformation characteristics of red blood cells (RBCs) on a rotating compact disc platform. Our study brings out the interplay between haemoglobin content and RBC deformability in a centrifugally actuated microfluidic environment. We reveal that RBC deformations follow the similar trend of principal stress distributed throughout the radial direction, rendering an insight into the mechano-physical processes involved. This study can be used as a diagnostic marker to determine haematological disorders in diseased blood samples tested on compact disc based microfluidic platforms.

Dynamical modeling and analysis of large cellular regulatory networks

NASA Astrophysics Data System (ADS)

Bérenguier, D.; Chaouiya, C.; Monteiro, P. T.; Naldi, A.; Remy, E.; Thieffry, D.; Tichit, L.

2013-06-01

The dynamical analysis of large biological regulatory networks requires the development of scalable methods for mathematical modeling. Following the approach initially introduced by Thomas, we formalize the interactions between the components of a network in terms of discrete variables, functions, and parameters. Model simulations result in directed graphs, called state transition graphs. We are particularly interested in reachability properties and asymptotic behaviors, which correspond to terminal strongly connected components (or "attractors") in the state transition graph. A well-known problem is the exponential increase of the size of state transition graphs with the number of network components, in particular when using the biologically realistic asynchronous updating assumption. To address this problem, we have developed several complementary methods enabling the analysis of the behavior of large and complex logical models: (i) the definition of transition priority classes to simplify the dynamics; (ii) a model reduction method preserving essential dynamical properties, (iii) a novel algorithm to compact state transition graphs and directly generate compressed representations, emphasizing relevant transient and asymptotic dynamical properties. The power of an approach combining these different methods is demonstrated by applying them to a recent multilevel logical model for the network controlling CD4+ T helper cell response to antigen presentation and to a dozen cytokines. This model accounts for the differentiation of canonical Th1 and Th2 lymphocytes, as well as of inflammatory Th17 and regulatory T cells, along with many hybrid subtypes. All these methods have been implemented into the software GINsim, which enables the definition, the analysis, and the simulation of logical regulatory graphs.

Analysis of compaction initiation in human embryos by using time-lapse cinematography.

PubMed

Iwata, Kyoko; Yumoto, Keitaro; Sugishima, Minako; Mizoguchi, Chizuru; Kai, Yoshiteru; Iba, Yumiko; Mio, Yasuyuki

2014-04-01

To analyze the initiation of compaction in human embryos in vitro by using time-lapse cinematography (TLC), with the goal of determining the precise timing of compaction and clarifying the morphological changes underlying the compaction process. One hundred and fifteen embryos donated by couples with no further need for embryo-transfer were used in this study. Donated embryos were thawed and processed, and then their morphological behavior during the initiation of compaction was dynamically observed via time-lapse cinematography (TLC) for 5 days. Although the initiation of compaction occurred throughout the period from the 4-cell to 16-cell stage, 99 (86.1 %) embryos initiated compaction at the 8-cell stage or later, with initiation at the 8-cell stage being most frequent (22.6 %). Of these 99 embryos, 49.5 % developed into good-quality blastocysts. In contrast, of the 16 (13.9 %) embryos that initiated compaction prior to the 8-cell stage, only 18.8 % developed into good-quality blastocysts. Embryos that initiated compaction before the 8-cell stage showed significantly higher numbers of multinucleated blastomeres, due to asynchronism in nuclear division at the third mitotic division resulting from cytokinetic failure. The initiation of compaction primarily occurs at the third mitotic division or later in human embryos. Embryos that initiate compaction before the 8-cell stage are usually associated with aberrant embryonic development (i.e., cytokinetic failure accompanied by karyokinesis).

Impact Cratering Calculations

NASA Technical Reports Server (NTRS)

Ahrens, Thomas J.

2001-01-01

This research is computational /theoretical and complements the Caltech experimental program. We have developed an understanding of the basic physical processes and produced computational models and implemented these into Eulerian and Lagrangian finite element codes. The key issues we have addressed include the conditions required for: faulting (strain localization), elastic moduli weakening, dynamic weakening (layering elastic instabilities and fluidization), bulking (creation of porosity at zero pressure) and compaction of pores, frictional melting (creation of pseudotachylytes), partial and selective devolatilization of materials (e.g. CaCO3, water/ice mixtures), and debris flows.

The Tidal History Of Iapetus: Spin Dynamics In The Light Of A Refined Dissipation Model

DTIC Science & Technology

2011-01-01

a currently valid OMB control number. 1. REPORT DATE 2011 2. REPORT TYPE 3. DATES COVERED 00-00-2011 to 00-00-2011 4. TITLE AND SUBTITLE The...that heating due to the decay of short‐lived radioisotopes , mainly 26Al, could drive early compaction. The consequent increase in thermal conductivity... Earth are for specific conditions of stress and temperature that are far different from those expected in Iapetus or other icy satellites: a temperature

Kaluza-Klein cosmology from five-dimensional Lovelock-Cartan theory

NASA Astrophysics Data System (ADS)

Castillo-Felisola, Oscar; Corral, Cristóbal; del Pino, Simón; Ramírez, Francisca

2016-12-01

We study the Kaluza-Klein dimensional reduction of the Lovelock-Cartan theory in five-dimensional spacetime, with a compact dimension of S1 topology. We find cosmological solutions of the Friedmann-Robertson-Walker class in the reduced spacetime. The torsion and the fields arising from the dimensional reduction induce a nonvanishing energy-momentum tensor in four dimensions. We find solutions describing expanding, contracting, and bouncing universes. The model shows a dynamical compactification of the extra dimension in some regions of the parameter space.

The unifying role of dissipative action in the dynamic failure of solids

DOE PAGES

Grady, Dennis

2015-05-19

Dissipative action, the product of dissipation energy and transport time, is fundamental to the dynamic failure of solids. Invariance of the dissipative action underlies the fourth-power nature of structured shock waves observed in selected solid metals and compounds. Dynamic failure through shock compaction, tensile spall and adiabatic shear are also governed by a constancy of the dissipative action. This commonality underlying the various modes of dynamic failure is described and leads to deeper insights into failure of solids in the intense shock wave event. These insights are in turn leading to a better understanding of the shock deformation processes underlyingmore » the fourth-power law. Experimental result and material models encompassing the dynamic failure of solids are explored for the purpose of demonstrating commonalities leading to invariance of the dissipation action. As a result, calculations are extended to aluminum and uranium metals with the intent of predicting micro-scale energetics and spatial scales in the structured shock wave.« less

ξTauri: a unique laboratory to study the dynamic interaction in a compact hierarchical quadruple system

NASA Astrophysics Data System (ADS)

Nemravová, J. A.; Harmanec, P.; Brož, M.; Vokrouhlický, D.; Mourard, D.; Hummel, C. A.; Cameron, C.; Matthews, J. M.; Bolton, C. T.; Božić, H.; Chini, R.; Dembsky, T.; Engle, S.; Farrington, C.; Grunhut, J. H.; Guenther, D. B.; Guinan, E. F.; Korčáková, D.; Koubský, P.; Kříček, R.; Kuschnig, R.; Mayer, P.; McCook, G. P.; Moffat, A. F. J.; Nardetto, N.; Prša, A.; Ribeiro, J.; Rowe, J.; Rucinski, S.; Škoda, P.; Šlechta, M.; Tallon-Bosc, I.; Votruba, V.; Weiss, W. W.; Wolf, M.; Zasche, P.; Zavala, R. T.

2016-10-01

Context. Compact hierarchical systems are important because the effects caused by the dynamical interaction among its members occur ona human timescale. These interactions play a role in the formation of close binaries through Kozai cycles with tides. One such system is ξ Tauri: it has three hierarchical orbits: 7.14 d (eclipsing components Aa, Ab), 145 d (components Aa+Ab, B), and 51 yr (components Aa+Ab+B, C). Aims: We aim to obtain physical properties of the system and to study the dynamical interaction between its components. Methods: Our analysis is based on a large series of spectroscopic photometric (including space-borne) observations and long-baseline optical and infrared spectro-interferometric observations. We used two approaches to infer the system properties: a set of observation-specific models, where all components have elliptical trajectories, and an N-body model, which computes the trajectory of each component by integrating Newton's equations of motion. Results: The triple subsystem exhibits clear signs of dynamical interaction. The most pronounced are the advance of the apsidal line and eclipse-timing variations. We determined the geometry of all three orbits using both observation-specific and N-body models. The latter correctly accounted for observed effects of the dynamical interaction, predicted cyclic variations of orbital inclinations, and determined the sense of motion of all orbits. Using perturbation theory, we demonstrate that prominent secular and periodic dynamical effects are explainable with a quadrupole interaction. We constrained the basic properties of all components, especially of members of the inner triple subsystem and detected rapid low-amplitude light variations that we attribute to co-rotating surface structures of component B. We also estimated the radius of component B. Properties of component C remain uncertain because of its low relative luminosity. We provide an independent estimate of the distance to the system. Conclusions: The accuracy and consistency of our results make ξ Tau an excellent test bed for models of formation and evolution of hierarchical systems. Full Tables D.1-D.7 are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/594/A55Based on data from the MOST satellite, a former Canadian Space Agency mission, jointly operated by Microsatellite Systems Canada Inc. (MSCI; formerly Dynacon Inc.), the University of Toronto Institute for Aerospace Studies and the University of British Columbia, with the assistance of the University of Vienna.

Angular velocity of gravitational radiation from precessing binaries and the corotating frame

NASA Astrophysics Data System (ADS)

Boyle, Michael

2013-05-01

This paper defines an angular velocity for time-dependent functions on the sphere and applies it to gravitational waveforms from compact binaries. Because it is geometrically meaningful and has a clear physical motivation, the angular velocity is uniquely useful in helping to solve an important—and largely ignored—problem in models of compact binaries: the inverse problem of deducing the physical parameters of a system from the gravitational waves alone. It is also used to define the corotating frame of the waveform. When decomposed in this frame, the waveform has no rotational dynamics and is therefore as slowly evolving as possible. The resulting simplifications lead to straightforward methods for accurately comparing waveforms and constructing hybrids. As formulated in this paper, the methods can be applied robustly to both precessing and nonprecessing waveforms, providing a clear, comprehensive, and consistent framework for waveform analysis. Explicit implementations of all these methods are provided in accompanying computer code.

Global stability and tumor clearance conditions for a cancer chemotherapy system

NASA Astrophysics Data System (ADS)

Valle, Paul A.; Starkov, Konstantin E.; Coria, Luis N.

2016-11-01

In this paper we study the global dynamics of a cancer chemotherapy system presented by de Pillis et al. (2007). This mathematical model describes the interaction between tumor cells, effector-immune cells, circulating lymphocytes and chemotherapy treatment. By applying the localization method of compact invariant sets, we find lower and upper bounds for these three cells populations. Further, we define a bounded domain in R+,04 where all compact invariant sets of the system are located and provide conditions under which this domain is positively invariant. We apply LaSalle's invariance principle and one result concerning two-dimensional competitive systems in order to derive sufficient conditions for tumor clearance and global asymptotic stability of the tumor-free equilibrium point. These conditions are computed by using bounds of the localization domain and they are given in terms of the chemotherapy treatment. Finally, we perform numerical simulations in order to illustrate our results.

SimTrack: A compact c++ code for particle orbit and spin tracking in accelerators

DOE PAGES

Luo, Yun

2015-08-29

SimTrack is a compact c++ code of 6-d symplectic element-by-element particle tracking in accelerators originally designed for head-on beam–beam compensation simulation studies in the Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory. It provides a 6-d symplectic orbit tracking with the 4th order symplectic integration for magnet elements and the 6-d symplectic synchro-beam map for beam–beam interaction. Since its inception in 2009, SimTrack has been intensively used for dynamic aperture calculations with beam–beam interaction for RHIC. Recently, proton spin tracking and electron energy loss due to synchrotron radiation were added. In this article, I will present the code architecture,more » physics models, and some selected examples of its applications to RHIC and a future electron-ion collider design eRHIC.« less

SimTrack: A compact c++ library for particle orbit and spin tracking in accelerators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Yun

2015-06-24

SimTrack is a compact c++ library of 6-d symplectic element-by-element particle tracking in accelerators originally designed for head-on beam-beam compensation simulation studies in the Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory. It provides a 6-d symplectic orbit tracking with the 4th order symplectic integration for magnet elements and the 6-d symplectic synchro-beam map for beam-beam interaction. Since its inception in 2009, SimTrack has been intensively used for dynamic aperture calculations with beam-beam interaction for RHIC. Recently, proton spin tracking and electron energy loss due to synchrotron radiation were added. In this article, I will present the code architecture,more » physics models, and some selected examples of its applications to RHIC and a future electron-ion collider design eRHIC.« less

Compact self-Q-switched Tm:YLF laser at 1.91 μm

NASA Astrophysics Data System (ADS)

Zhang, B.; Li, L.; He, C. J.; Tian, F. J.; Yang, X. T.; Cui, J. H.; Zhang, J. Z.; Sun, W. M.

2018-03-01

We report self-Q-switching operation in a diode-pumped Tm:YLF bulk laser by exploiting saturable re-absorption under the quasi-three-level regime. Robust self-Q-switched pulse output at 1.91 μm in fundamental mode is demonstrated experimentally with 1.5 at.% doped Tm:YLF crystal. At maximum absorbed pump power of 4.5 W, the average output power and pulse energy are obtained as high as 610 mW and 29 μJ, respectively, with the corresponding slope efficiency of 22%. Pulse repetition rate is tunable in the range of 3-21 kHz with changing the pump power. The dynamics of self-Q-switching of Tm:YLF laser are discussed with the help of a rate equation model showing good agreement with the experiment. The compact self-Q-switched laser near 2 μm has potential application in laser radar systems for accurate wind velocity measurements.

The Atmospheric Dynamics of alpha Tau (K5 III) - Clues to Understanding the Magnetic Dynamo in Late-Type Giant Stars

NASA Technical Reports Server (NTRS)

Carpenter, Kenneth G.; Airapetian, Vladimir

2008-01-01

Using HST/GHRS, HST/STIS and FUSE archival data for alpha Tau and the CHIANTI spectroscopic code, we have derived line shifts, volumetric emission measures, and plasma density estimates, and calculated filling factors for a number of UV lines forming between 10,000 K and 300,000 K in the outer atmosphere of this red giant star. The data suggest the presence of low-temperature extended regions and high-temperature compact regions, associated with magnetically open and closed structures in the stellar atmosphere, respectively. The signatures of UV lines from alpha Tau can be consistently understood via a model of upward-traveling Alfven waves in a gravitationally stratified atmosphere. These waves cause non-thermal broadening in UV lines due to unresolved wave motions and downward plasma motions in compact magnetic loops heated by resonant Alfven wave heating.

The Atmospheric Dynamics of Alpha Tau (K5 III) - Clues to Understanding the Magnetic Dynamo in Late-Type Giant Stars

NASA Technical Reports Server (NTRS)

Carpenter, Kenneth G.; Airapetian, Vladimir

2008-01-01

Using HST/GHRS, HST/STIS and FUSE archival data for a Tau and the CHIANTI spectroscopic code, we have derived line shifts, volumetric emission measures, and plasma density estimates, and calculated filling factors for a number of UV lines forming between 10,000 K and 300,000 K in the outer atmosphere of this red giant star. The data suggest the presence of low-temperature extended regions and high-temperature compact regions, associated with magnetically open and closed structures in the stellar atmosphere, respectively. The signatures of UV lines from a Tau can be consistently understood via a model of upward-traveling Alfv6n waves in a gravitationally stratified atmosphere. These waves cause nonthermal broadening in UV lines due to unresolved wave motions and downward plasma motions in compact magnetic loops heated by resonant Alfven wave heating.

Laws of cognition and the cognition of law.

PubMed

Kahan, Dan M

2015-02-01

This paper presents a compact synthesis of the study of cognition in legal decisionmaking. Featured dynamics include the story-telling model (Pennington & Hastie, 1986), lay prototypes (Smith, 1991), motivated cognition (Sood, 2012), and coherence-based reasoning (Simon, Pham, Le, & Holyoak, 2001). Unlike biases and heuristics understood to bound or constrain rationality, these dynamics identify how information shapes a variety of cognitive inputs-from prior beliefs to perceptions of events to the probative weight assigned new information-that rational decisionmaking presupposes. The operation of these mechanisms can be shown to radically alter the significance that jurors give to evidence, and hence the conclusions they reach, within a Bayesian framework of information processing. How these dynamics interact with the professional judgment of lawyers and judges, the paper notes, remains in need of investigation. Copyright © 2014 Elsevier B.V. All rights reserved.

The dynamic behavior of mortar under impact-loading

NASA Astrophysics Data System (ADS)

Kawai, Nobuaki; Inoue, Kenji; Misawa, Satoshi; Tanaka, Kyoji; Hayashi, Shizuo; Kondo, Ken-Ichi; Riedel, Werner

2007-06-01

Concrete and mortar are the most fundamental structural material. Therefore, considerable interest in characterizing the dynamic behavior of them under impact-loading exists. In this study, plate impact experiments have been performed to determine the dynamic behavior of mortar. Longitudinal and lateral stresses have been directly measured by means of embedded polyvinylidene fluoride (PVDF) gauges up to 1 GPa. A 200 mm-cal. powder gun enable us to measure longitudinal and lateral stresses at several point from the impact surface, simultaneously. The shear strength under impact-loading has been obtained from measured longitudinal and lateral stresses. The longitudinal stress profile shows a two-wave structure. It is indicated that this structure is associated with the onset of pore compaction and failure of mortar by comparing with hydrocode simulations using an elastic-plastic damage model for concrete.

Emergence of a stellar cusp by a dark matter cusp in a low-mass compact ultrafaint dwarf galaxy

NASA Astrophysics Data System (ADS)

Inoue, Shigeki

2017-06-01

Recent observations have been discovering new ultrafaint dwarf galaxies as small as ˜20 pc in half-light radius and ˜3 km s-1 in line-of-sight velocity dispersion. In these galaxies, dynamical friction on a star against dark matter can be significant and alter their stellar density distribution. The effect can strongly depend on a central density profile of dark matter, I.e. cusp or core. In this study, I perform computations using a classical and a modern analytic formula and N-body simulations to study how dynamical friction changes a stellar density profile and how different it is between a cuspy and a cored dark matter halo. This study shows that, if a dark matter halo has a cusp, dynamical friction can cause shrivelling instability that results in emergence of a stellar cusp in the central region ≲2 pc. On the other hand, if it has a constant-density core, dynamical friction is significantly weaker and does not generate a stellar cusp even if the galaxy has the same line-of-sight velocity dispersion. In such a compact and low-mass galaxy, since the shrivelling instability by dynamical friction is inevitable if it has a dark matter cusp, absence of a stellar cusp implies that the galaxy has a dark matter core. I expect that this could be used to diagnose a dark matter density profile in these compact ultrafaint dwarf galaxies.

THE PHYSICS OF ELEMENTARY PARTICLES AND FIELDS: Neutrino Oscillation Induced by Chiral Phase Transition

NASA Astrophysics Data System (ADS)

Mu, Cheng-Fu; Sun, Gao-Feng; Zhuang, Peng-Fei

2009-03-01

Electric charge neutrality provides a relationship between chiral dynamics and neutrino propagation in compact stars. Due to the sudden drop of the electron density at thefirst-order chiral phase transition, the oscillation for low energy neutrinos is significant and can be regarded as a signature of chiral symmetry restoration in the core of compact stars.

La Freccia Rossa: an IR-dark cloud hosting the Milky Way intermediate-mass black hole candidate

NASA Astrophysics Data System (ADS)

Ravi, Vikram; Vedantham, Harish; Phinney, E. Sterl

2018-07-01

The dynamics of the high-velocity compact molecular cloud CO-0.40-0.22 have been interpreted as evidence for a ˜105 M⊙ black hole within 60 pc of Sgr A*. Recently, Oka et al. have identified a compact millimetre-continuum source, CO-0.40-0.22*, with this candidate black hole. Here we present a collation of radio and infrared data at this location. Australia Telescope Compact Array constraints on the radio spectrum, and the detection of a mid-infrared counterpart, are in tension with an Sgr A*-like model for CO-0.40-0.22* despite the comparable bolometric to the Eddington luminosity ratios under the intermediate-mass black hole interpretation. A protostellar-disc scenario is, however, tenable. CO-0.40-0.22(*) is positionally coincident with an arrowhead-shaped infrared-dark cloud (which we call the Freccia Rossa). If the VLSR ≈ 70 km s-1 systemic velocity of CO-0.40-0.22 is common to the entire Freccia Rossa system, we hypothesize that it is the remnant of a high-velocity cloud that has plunged into the Milky Way from the Galactic halo.

Investigating Compaction by Intergranular Pressure Solution Using the Discrete Element Method

NASA Astrophysics Data System (ADS)

van den Ende, M. P. A.; Marketos, G.; Niemeijer, A. R.; Spiers, C. J.

2018-01-01

Intergranular pressure solution creep is an important deformation mechanism in the Earth's crust. The phenomenon has been frequently studied and several analytical models have been proposed that describe its constitutive behavior. These models require assumptions regarding the geometry of the aggregate and the grain size distribution in order to solve for the contact stresses and often neglect shear tractions. Furthermore, analytical models tend to overestimate experimental compaction rates at low porosities, an observation for which the underlying mechanisms remain to be elucidated. Here we present a conceptually simple, 3-D discrete element method (DEM) approach for simulating intergranular pressure solution creep that explicitly models individual grains, relaxing many of the assumptions that are required by analytical models. The DEM model is validated against experiments by direct comparison of macroscopic sample compaction rates. Furthermore, the sensitivity of the overall DEM compaction rate to the grain size and applied stress is tested. The effects of the interparticle friction and of a distributed grain size on macroscopic strain rates are subsequently investigated. Overall, we find that the DEM model is capable of reproducing realistic compaction behavior, and that the strain rates produced by the model are in good agreement with uniaxial compaction experiments. Characteristic features, such as the dependence of the strain rate on grain size and applied stress, as predicted by analytical models, are also observed in the simulations. DEM results show that interparticle friction and a distributed grain size affect the compaction rates by less than half an order of magnitude.

Compaction of North-sea chalk by pore-failure and pressure solution in a producing reservoir

NASA Astrophysics Data System (ADS)

Keszthelyi, Daniel; Dysthe, Dag; Jamtveit, Bjorn

2016-02-01

The Ekofisk field, Norwegian North sea,is an example of compacting chalk reservoir with considerable subsequent seafloor subsidence due to petroleum production. Previously, a number of models were created to predict the compaction using different phenomenological approaches. Here we present a different approach, we use a new creep model based on microscopic mechanisms with no fitting parameters to predict strain rate at core scale and at reservoir scale. The model is able to reproduce creep experiments and the magnitude of the observed subsidence making it the first microstructural model which can explain the Ekofisk compaction.

Time-resolved atomic inner-shell spectroscopy

NASA Astrophysics Data System (ADS)

Drescher, M.; Hentschel, M.; Kienberger, R.; Uiberacker, M.; Yakovlev, V.; Scrinzi, A.; Westerwalbesloh, Th.; Kleineberg, U.; Heinzmann, U.; Krausz, F.

2002-10-01

The characteristic time constants of the relaxation dynamics of core-excited atoms have hitherto been inferred from the linewidths of electronic transitions measured by continuous-wave extreme ultraviolet or X-ray spectroscopy. Here we demonstrate that a laser-based sampling system, consisting of a few-femtosecond visible light pulse and a synchronized sub-femtosecond soft X-ray pulse, allows us to trace these dynamics directly in the time domain with attosecond resolution. We have measured a lifetime of 7.9-0.9^{+1.0fs of M-shell vacancies of krypton in such a pump-probe experiment.}

Using stereo satellite imagery to account for ablation, entrainment, and compaction in volume calculations for rock avalanches on Glaciers: Application to the 2016 Lamplugh Rock Avalanche in Glacier Bay National Park, Alaska

USGS Publications Warehouse

Bessette-Kirton, Erin; Coe, Jeffrey A.; Zhou, Wendy

2018-01-01

The use of preevent and postevent digital elevation models (DEMs) to estimate the volume of rock avalanches on glaciers is complicated by ablation of ice before and after the rock avalanche, scour of material during rock avalanche emplacement, and postevent ablation and compaction of the rock avalanche deposit. We present a model to account for these processes in volume estimates of rock avalanches on glaciers. We applied our model by calculating the volume of the 28 June 2016 Lamplugh rock avalanche in Glacier Bay National Park, Alaska. We derived preevent and postevent 2‐m resolution DEMs from WorldView satellite stereo imagery. Using data from DEM differencing, we reconstructed the rock avalanche and adjacent surfaces at the time of occurrence by accounting for elevation changes due to ablation and scour of the ice surface, and postevent deposit changes. We accounted for uncertainties in our DEMs through precise coregistration and an assessment of relative elevation accuracy in bedrock control areas. The rock avalanche initially displaced 51.7 ± 1.5 Mm3 of intact rock and then scoured and entrained 13.2 ± 2.2 Mm3 of snow and ice during emplacement. We calculated the total deposit volume to be 69.9 ± 7.9 Mm3. Volume estimates that did not account for topographic changes due to ablation, scour, and compaction underestimated the deposit volume by 31.0–46.8 Mm3. Our model provides an improved framework for estimating uncertainties affecting rock avalanche volume measurements in glacial environments. These improvements can contribute to advances in the understanding of rock avalanche hazards and dynamics.

A spatial dynamic model to assess piospheric land degradation processes of SW Iberian rangelands

NASA Astrophysics Data System (ADS)

Herguido Sevillano, Estela; Ibáñez, Javier; Francisco Lavado Contador, Joaquín; Pulido-Fernández, Manuel; Schnabel, Susanne

2015-04-01

Iberian open wooded rangelands (known as dehesas or montados) constitute valuable agro-silvo-pastoral systems traditionally considered as highly sustainable. Nevertheless, in the recent decades, those systems are undergoing changes of land use and management practices that compromise its sustainability. Some of those changes, as the rising construction of watering points and the high spatial fragmentation and livestock movement restriction associated to fencing, show an aggregated effect with livestock, producing an impact gradient over soil and vegetation. Soil compaction related to livestock pressure is higher around watering points, with bare soil halos and patches of scarce vegetation or nude soil developing with higher frequency in areas close to them. Using the freeware Dinamica EGO as environmental modeling platform, we have developed a theoretic spatial dynamic model that represents some of the processes of land degradation associated to livestock grazing in dehesa fenced enclosures. Spatial resolution is high since every cell in the model is a square unit area of 1 m2. We paid particular attention to the relationships between soil degradation by compaction (porosity), livestock pressure, rainfall, pasture growth and shrub cover and bare soil generation. The model considers pasture growth as related to soil compaction, measured by the pore space in the top 10 cm soil layer. Annual precipitation is randomly generated following a normal distribution. When annual precipitation and pore space increase, also does pasture growth. Besides, there is a feedback between pasture growth and pore space, given that pasture roots increases soil porosity. The cell utility for livestock function has been defined as an exponential function of the distance of a cell to watering points and the amount of pasture present in it. The closer the cell to a pond and the higher the amount of pasture, the higher is cell utility. The latter is modulated by a normal random variable to capture accidental effects. This variable has zero mean and a standard deviation linearly related to the distance to the pond. Livestock utilization of a cell is a function of its relative utility, the stocking rate and the time that animals spend at the enclosure. Since livestock trampling promotes soil compaction, livestock utilization has a negative effect on pore space. The probability of transition from herbaceous to shrubs is also modulated by pore space, and thus livestock utilization, as shrub development needs a minimum porosity value for seeds to successfully germinate. In addition, it is influenced by the proportion of cells occupied by shrubs in a radius where seed dispersal or exclusion by competition may occur. The model contemplates the probability of transition from shrubs to herbaceous through shrub mortality, and the age of the shrubs, which influences seed production and shrub cover. Pasture consumption by livestock and pasture remaining at the end of summer were also modeled, so that it is possible to obtain maps of bare soil at that time. Likewise, the model generates maps of vegetation state (shrubs or herbaceous) and pasture growth. The values of the set of 31 parameters were obtained from field measurements and from publications. Those parameters lacking quantitative information were calibrated by comparing model performance with the dynamics of true enclosures analyzed between 1984 and 2009 in ortophotographs. Stocking rates were inferred from farmers' interviews performed in 2009 about present and past land use and management practices. The model developed is intended to analyze strategies of livestock management in dehesas. Particularly, soil conservation practices as related to livestock pressure can be simulated looking for optimized schemes. Moreover, the model provides the possibility of generating simulations for future climate scenarios, studying the effects of climate change on livestock carrying capacity on these systems. Thanks to the Spanish Ministerio de Economía y Competitividad for financially supporting this study through AMID (CGL2011-23361) project.

Modeling of hot-mix asphalt compaction : a thermodynamics-based compressible viscoelastic model

DOT National Transportation Integrated Search

2010-12-01

Compaction is the process of reducing the volume of hot-mix asphalt (HMA) by the application of external forces. As a result of compaction, the volume of air voids decreases, aggregate interlock increases, and interparticle friction increases. The qu...

Integrated firn elevation change model for glaciers and ice caps

NASA Astrophysics Data System (ADS)

Saß, Björn; Sauter, Tobias; Braun, Matthias

2016-04-01

We present the development of a firn compaction model in order to improve the volume to mass conversion of geodetic glacier mass balance measurements. The model is applied on the Arctic ice cap Vestfonna. Vestfonna is located on the island Nordaustlandet in the north east of Svalbard. Vestfonna covers about 2400 km² and has a dome like shape with well-defined outlet glaciers. Elevation and volume changes measured by e.g. satellite techniques are becoming more and more popular. They are carried out over observation periods of variable length and often covering different meteorological and snow hydrological regimes. The elevation change measurements compose of various components including dynamic adjustments, firn compaction and mass loss by downwasting. Currently, geodetic glacier mass balances are frequently converted from elevation change measurements using a constant conversion factor of 850 kg m-³ or the density of ice (917 kg m-³) for entire glacier basins. However, the natural conditions are rarely that static. Other studies used constant densities for the ablation (900 kg m-³) and accumulation (600 kg m-³) areas, whereby density variations with varying meteorological and climate conditions are not considered. Hence, each approach bears additional uncertainties from the volume to mass conversion that are strongly affected by the type and timing of the repeat measurements. We link and adapt existing models of surface energy balance, accumulation and snow and firn processes in order to improve the volume to mass conversion by considering the firn compaction component. Energy exchange at the surface is computed by a surface energy balance approach and driven by meteorological variables like incoming short-wave radiation, air temperature, relative humidity, air pressure, wind speed, all-phase precipitation, and cloud cover fraction. Snow and firn processes are addressed by a coupled subsurface model, implemented with a non-equidistant layer discretisation. On our poster we present a general view on the model structure, the input data (model forcing) and finally, an exemplary test case with basic approaches of validation.

Loops determine the mechanical properties of mitotic chromosomes

NASA Astrophysics Data System (ADS)

Zhang, Yang; Heermann, Dieter W.

2013-03-01

In mitosis, chromosomes undergo a condensation into highly compacted, rod-like objects. Many models have been put forward for the higher-order organization of mitotic chromosomes including radial loop and hierarchical folding models. Additionally, mechanical properties of mitotic chromosomes under different conditions were measured. However, the internal organization of mitotic chromosomes still remains unclear. Here we present a polymer model for mitotic chromosomes and show how chromatin loops play a major role for their mechanical properties. The key assumption of the model is the ability of the chromatin fibre to dynamically form loops with the help of binding proteins. Our results show that looping leads to a tight compaction and significantly increases the bending rigidity of chromosomes. Moreover, our qualitative prediction of the force elongation behaviour is close to experimental findings. This indicates that the internal structure of mitotic chromosomes is based on self-organization of the chromatin fibre. We also demonstrate how number and size of loops have a strong influence on the mechanical properties. We suggest that changes in the mechanical characteristics of chromosomes can be explained by an altered internal loop structure. YZ gratefully appreciates funding by the German National Academic Foundation (Studienstiftung des deutschen Volkes) and support by the Heidelberg Graduate School for Mathematical and Computational Methods in the Sciences (HGS MathComp).

Synthesized airfoil data method for prediction of dynamic stall and unsteady airloads

NASA Technical Reports Server (NTRS)

Gangwani, S. T.

1983-01-01

A detailed analysis of dynamic stall experiments has led to a set of relatively compact analytical expressions, called synthesized unsteady airfoil data, which accurately describe in the time-domain the unsteady aerodynamic characteristics of stalled airfoils. An analytical research program was conducted to expand and improve this synthesized unsteady airfoil data method using additional available sets of unsteady airfoil data. The primary objectives were to reduce these data to synthesized form for use in rotor airload prediction analyses and to generalize the results. Unsteady drag data were synthesized which provided the basis for successful expansion of the formulation to include computation of the unsteady pressure drag of airfoils and rotor blades. Also, an improved prediction model for airfoil flow reattachment was incorporated in the method. Application of this improved unsteady aerodynamics model has resulted in an improved correlation between analytic predictions and measured full scale helicopter blade loads and stress data.

Rotating reverse osmosis: a dynamic model for flux and rejection

NASA Technical Reports Server (NTRS)

Lee, S.; Lueptow, R. M.

2001-01-01

Reverse osmosis (RO) is a compact process for the removal of ionic and organic pollutants from contaminated water. However, flux decline and rejection deterioration due to concentration polarization and membrane fouling hinders the application of RO technology. In this study, a rotating cylindrical RO membrane is theoretically investigated as a novel method to reduce polarization and fouling. A dynamic model based on RO membrane transport incorporating concentration polarization is used to predict the performance of rotating RO system. Operating parameters such as rotational speed and transmembrane pressure play an important role in determining the flux and rejection in rotating RO. For a given geometry, a rotational speed sufficient to generate Taylor vortices in the annulus is essential to maintain high flux as well as high rejection. The flux and rejection were calculated for wide range of operating pressures and rotational speeds. c 2001 Elsevier Science B.V. All rights reserved.

Asymmetric statistics of order books: The role of discreteness and evidence for strategic order placement

NASA Astrophysics Data System (ADS)

Zaccaria, A.; Cristelli, M.; Alfi, V.; Ciulla, F.; Pietronero, L.

2010-06-01

We show that the statistics of spreads in real order books is characterized by an intrinsic asymmetry due to discreteness effects for even or odd values of the spread. An analysis of data from the New York Stock Exchange (NYSE) order book points out that traders’ strategies contribute to this asymmetry. We also investigate this phenomenon in the framework of a microscopic model and, by introducing a nonuniform deposition mechanism for limit orders, we are able to quantitatively reproduce the asymmetry found in the experimental data. Simulations of our model also show a realistic dynamics with a sort of intermittent behavior characterized by long periods in which the order book is compact and liquid interrupted by volatile configurations. The order placement strategies produce a nontrivial behavior of the spread relaxation dynamics which is similar to the one observed in real markets.

Competitive repetition suppression (CoRe) clustering: a biologically inspired learning model with application to robust clustering.

PubMed

Bacciu, Davide; Starita, Antonina

2008-11-01

Determining a compact neural coding for a set of input stimuli is an issue that encompasses several biological memory mechanisms as well as various artificial neural network models. In particular, establishing the optimal network structure is still an open problem when dealing with unsupervised learning models. In this paper, we introduce a novel learning algorithm, named competitive repetition-suppression (CoRe) learning, inspired by a cortical memory mechanism called repetition suppression (RS). We show how such a mechanism is used, at various levels of the cerebral cortex, to generate compact neural representations of the visual stimuli. From the general CoRe learning model, we derive a clustering algorithm, named CoRe clustering, that can automatically estimate the unknown cluster number from the data without using a priori information concerning the input distribution. We illustrate how CoRe clustering, besides its biological plausibility, posses strong theoretical properties in terms of robustness to noise and outliers, and we provide an error function describing CoRe learning dynamics. Such a description is used to analyze CoRe relationships with the state-of-the art clustering models and to highlight CoRe similitude with rival penalized competitive learning (RPCL), showing how CoRe extends such a model by strengthening the rival penalization estimation by means of loss functions from robust statistics.

Algebraic Bethe ansatz for U(1) invariant integrable models: Compact and non-compact applications

NASA Astrophysics Data System (ADS)

Martins, M. J.; Melo, C. S.

2009-10-01

We apply the algebraic Bethe ansatz developed in our previous paper [C.S. Melo, M.J. Martins, Nucl. Phys. B 806 (2009) 567] to three different families of U(1) integrable vertex models with arbitrary N bond states. These statistical mechanics systems are based on the higher spin representations of the quantum group U[SU(2)] for both generic and non-generic values of q as well as on the non-compact discrete representation of the SL(2,R) algebra. We present for all these models the explicit expressions for both the on-shell and the off-shell properties associated to the respective transfer matrices eigenvalue problems. The amplitudes governing the vectors not parallel to the Bethe states are shown to factorize in terms of elementary building blocks functions. The results for the non-compact SL(2,R) model are argued to be derived from those obtained for the compact systems by taking suitable N→∞ limits. This permits us to study the properties of the non-compact SL(2,R) model starting from systems with finite degrees of freedom.

Predictive process simulation of cryogenic implants for leading edge transistor design

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gossmann, Hans-Joachim; Zographos, Nikolas; Park, Hugh

2012-11-06

Two cryogenic implant TCAD-modules have been developed: (i) A continuum-based compact model targeted towards a TCAD production environment calibrated against an extensive data-set for all common dopants. Ion-specific calibration parameters related to damage generation and dynamic annealing were used and resulted in excellent fits to the calibration data-set. (ii) A Kinetic Monte Carlo (kMC) model including the full time dependence of ion-exposure that a particular spot on the wafer experiences, as well as the resulting temperature vs. time profile of this spot. It was calibrated by adjusting damage generation and dynamic annealing parameters. The kMC simulations clearly demonstrate the importancemore » of the time-structure of the beam for the amorphization process: Assuming an average dose-rate does not capture all of the physics and may lead to incorrect conclusions. The model enables optimization of the amorphization process through tool parameters such as scan speed or beam height.« less

Communication: Effect of density on the physical aging of pressure-densified polymethylmethacrylate

NASA Astrophysics Data System (ADS)

Casalini, R.; Roland, C. M.

2017-09-01

The rate of physical aging of glassy polymethylmethacrylate (PMMA), followed from the change in the secondary relaxation with aging, is found to be independent of the density, the latter controlled by the pressure during glass formation. Thus, the aging behavior of the secondary relaxation is the same whether the glass is more compacted or less dense than the corresponding equilibrium liquid. This equivalence in aging of glasses formed under different pressures indicates that local packing is the dominant variable governing the glassy dynamics. The fact that pressure densification yields different glass structures is at odds with a model for non-associated materials having dynamic properties exhibited by PMMA, such as density scaling of the relaxation time and isochronal superposition of the relaxation dispersion.

Accretion of a symmetry-breaking scalar field by a Schwarzschild black hole

NASA Astrophysics Data System (ADS)

Traykova, Dina; Braden, Jonathan; Peiris, Hiranya V.

2018-01-01

We simulate the behaviour of a Higgs-like field in the vicinity of a Schwarzschild black hole using a highly accurate numerical framework. We consider both the limit of the zero-temperature Higgs potential and a toy model for the time-dependent evolution of the potential when immersed in a slowly cooling radiation bath. Through these numerical investigations, we aim to improve our understanding of the non-equilibrium dynamics of a symmetry-breaking field (such as the Higgs) in the vicinity of a compact object such as a black hole. Understanding this dynamics may suggest new approaches for studying properties of scalar fields using black holes as a laboratory. This article is part of the Theo Murphy meeting issue `Higgs Cosmology'.

Microscopic approach to string gas cosmology

NASA Astrophysics Data System (ADS)

Evnin, Oleg

2014-03-01

In this contribution to the proceedings of the Conference on Modern Physics of Compact Stars and Relativistic Gravity in Yerevan, Armenia (September 18-21, 2013), I review recent work attempting to give a fundamental definition to string evolution in a dynamical, fully compact universe, and present a sketch of how the resulting formalism can be used for addressing questions of phenomenological significance in the field of string gas cosmology.

Localization and Instability in Sheared Granular Materials: Role of Pore Fluids and Non-monotonic Rate Dependent Rheology

NASA Astrophysics Data System (ADS)

Ma, X.; Elbanna, A. E.; Kothari, K.

2017-12-01

Fault zone dynamics hold the key to resolving many outstanding geophysical problems including the heat flow paradox, discrepancy between fault static and dynamic strength, and energy partitioning. Most fault zones that generate tectonic events are gouge filled and fluid saturated posing the need for formulating gouge-specific constitutive models that capture spatially heterogeneous compaction and dilation, non-monotonic rate dependence, and transition between localized and distributed deformation. In this presentation, we focus primarily on elucidating microscopic underpinnings for shear banding and stick-slip instabilities in sheared saturated granular materials and explore their implications for earthquake dynamics. We use a non-equilibrium thermodynamics model, the Shear Transformation Zone theory, to investigate the dynamics of strain localization and its connection to stability of sliding in the presence and absence of pore fluids. We also consider the possible influence of self-induced mechanical vibrations as well as the role of external acoustic vibrations as analogue for triggering by a distant event. For the dry case, our results suggest that at low and intermediate strain rates, persistent shear bands develop only in the absence of vibrations. Vibrations tend to fluidize the granular network and de-localize slip at these rates. Stick-slip is only observed for rough grains and it is confined to the shear band. At high strain rates, stick-slip disappears and the different systems exhibit similar stress-slip response. Changing the vibration intensity, duration or time of application alters the system response and may cause long-lasting rheological changes. The presence of pore fluids modifies the stick slip pattern and may lead to both loss and development of slip instability depending on the value of the confining pressure, imposed strain rate and hydraulic parameters. We analyze these observations in terms of possible transitions between rate strengthening and rate weakening response facilitated by a competition between shear induced dilation and acoustic compaction. We discuss the implications of our results on dynamic triggering, quiescence and strength evolution in gouge filled fault zones.

Adsorption of insulin peptide on charged single-walled carbon nanotubes: significant role of ordered water molecules.

PubMed

Shen, Jia-Wei; Wu, Tao; Wang, Qi; Kang, Yu; Chen, Xin

2009-06-02

Ordered hydration shells: The more ordered hydration shells outside the charged CNT surfaces prevent more compact adsorption of the peptide in the charged CNT systems [picture: see text], but peptide binding strengths on the charged CNT surfaces are stronger due to the electrostatic interaction.Studies of adsorption dynamics and stability for peptides/proteins on single-walled carbon nanotubes (SWNTs) are of great importance for a better understanding of the properties and nature of nanotube-based biosystems. Herein, the dynamics and mechanism of the adsorption of the insulin chain B peptide on different charged SWNTs are investigated by explicit solvent molecular dynamics simulations. The results show that all types of surfaces effectively attract the model peptide. Water molecules play a significant role in peptide adsorption on the surfaces of charged carbon nanotubes (CNTs). Compared to peptide adsorption on neutral CNT surfaces, the more ordered hydration shells outside the tube prevent more compact adsorption of the peptide in charged CNT systems. This shield effect leads to a smaller conformational change and van der Waals interaction between the peptide and surfaces, but peptide binding strengths on charged CNT surfaces are stronger than those on the neutral CNT surface due to the strong electrostatic interaction. The result of these simulations implies the possibility of improving the binding strength of peptides/proteins on CNT surfaces, as well as keeping the integrity of the peptide/protein conformation in peptide/protein-CNT complexes by charging the CNTs.

Modeling the Dynamics of Soil Structure and Water in Agricultural Soil

NASA Astrophysics Data System (ADS)

Weller, U.; Lang, B.; Rabot, E.; Stössel, B.; Urbanski, L.; Vogel, H. J.; Wiesmeier, M.; Wollschlaeger, U.

2017-12-01

The impact of agricultural management on soil functions is manifold and severe. It has both positive and adverse influence. Our goal is to develop model tools quantifying the agricultural impact on soil functions based on a mechanistic understanding of soil processes to support farmers and decision makers. The modeling approach is based on defining relevant soil components, i.e. soil matrix, macropores, organisms, roots and organic matter. They interact and form the soil's macroscopic properties and functions including water and gas dynamics, and biochemical cycles. Based on existing literature information we derive functional interaction processes and combine them in a network of dynamic soil components. In agricultural soils, a major issue is linked to changes in soil structure and their influence on water dynamics. Compaction processes are well studied in literature, but for the resilience due to root growth and activity of soil organisms the information is scarcer. We implement structural dynamics into soil water and gas simulations using a lumped model that is both coarse enough to allow extensive model runs while still preserving some important, yet rarely modeled phenomenons like preferential flow, hysteretic and dynamic behavior. For simulating water dynamics, at each depth, the model assumes water at different binding energies depending on soil structure, i.e. the pore size distribution. Non-equilibrium is postulated, meaning that free water may occur even if the soil is not fully saturated. All energy levels are interconnected allowing water to move, both within a spatial node, and between neighboring nodes (adding gravity). Structure dynamics alters the capacity of this water compartments, and the conductance of its connections. Connections are switched on and off depending on whether their sources contain water or their targets have free capacity. This leads to piecewise linear system behavior that allows fast calculation for extended time steps. Based on this concept, the dynamics of soil structure can be directly linked to soil water dynamics as a main driver for other soil processes. Further steps will include integration of temperature and solute leaching as well as defining the feedback of the water regime on the structure forming processes.

SOLAR SYSTEM MOONS AS ANALOGS FOR COMPACT EXOPLANETARY SYSTEMS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kane, Stephen R.; Hinkel, Natalie R.; Raymond, Sean N., E-mail: skane@ipac.caltech.edu

2013-11-01

The field of exoplanetary science has experienced a recent surge of new systems that is largely due to the precision photometry provided by the Kepler mission. The latest discoveries have included compact planetary systems in which the orbits of the planets all lie relatively close to the host star, which presents interesting challenges in terms of formation and dynamical evolution. The compact exoplanetary systems are analogous to the moons orbiting the giant planets in our solar system, in terms of their relative sizes and semimajor axes. We present a study that quantifies the scaled sizes and separations of the solarmore » system moons with respect to their hosts. We perform a similar study for a large sample of confirmed Kepler planets in multi-planet systems. We show that a comparison between the two samples leads to a similar correlation between their scaled sizes and separation distributions. The different gradients of the correlations may be indicative of differences in the formation and/or long-term dynamics of moon and planetary systems.« less

Transition Pathway and Its Free-Energy Profile: A Protocol for Protein Folding Simulations

PubMed Central

Lee, In-Ho; Kim, Seung-Yeon; Lee, Jooyoung

2013-01-01

We propose a protocol that provides a systematic definition of reaction coordinate and related free-energy profile as the function of temperature for the protein-folding simulation. First, using action-derived molecular dynamics (ADMD), we investigate the dynamic folding pathway model of a protein between a fixed extended conformation and a compact conformation. We choose the pathway model to be the reaction coordinate, and the folding and unfolding processes are characterized by the ADMD step index, in contrast to the common a priori reaction coordinate as used in conventional studies. Second, we calculate free-energy profile as the function of temperature, by employing the replica-exchange molecular dynamics (REMD) method. The current method provides efficient exploration of conformational space and proper characterization of protein folding/unfolding dynamics from/to an arbitrary extended conformation. We demonstrate that combination of the two simulation methods, ADMD and REMD, provides understanding on molecular conformational changes in proteins. The protocol is tested on a small protein, penta-peptide of met-enkephalin. For the neuropeptide met-enkephalin system, folded, extended, and intermediate sates are well-defined through the free-energy profile over the reaction coordinate. Results are consistent with those in the literature. PMID:23917881

Dynamical behavior and Jacobi stability analysis of wound strings

NASA Astrophysics Data System (ADS)

Lake, Matthew J.; Harko, Tiberiu

2016-06-01

We numerically solve the equations of motion (EOM) for two models of circular cosmic string loops with windings in a simply connected internal space. Since the windings cannot be topologically stabilized, stability must be achieved (if at all) dynamically. As toy models for realistic compactifications, we consider windings on a small section of mathbb {R}^2, which is valid as an approximation to any simply connected internal manifold if the winding radius is sufficiently small, and windings on an S^2 of constant radius mathcal {R}. We then use Kosambi-Cartan-Chern (KCC) theory to analyze the Jacobi stability of the string equations and determine bounds on the physical parameters that ensure dynamical stability of the windings. We find that, for the same initial conditions, the curvature and topology of the internal space have nontrivial effects on the microscopic behavior of the string in the higher dimensions, but that the macroscopic behavior is remarkably insensitive to the details of the motion in the compact space. This suggests that higher-dimensional signatures may be extremely difficult to detect in the effective (3+1)-dimensional dynamics of strings compactified on an internal space, even if configurations with nontrivial windings persist over long time periods.

Molecular interactions and residues involved in force generation in the T4 viral DNA packaging motor.

PubMed

Migliori, Amy D; Smith, Douglas E; Arya, Gaurav

2014-12-12

Many viruses utilize molecular motors to package their genomes into preformed capsids. A striking feature of these motors is their ability to generate large forces to drive DNA translocation against entropic, electrostatic, and bending forces resisting DNA confinement. A model based on recently resolved structures of the bacteriophage T4 motor protein gp17 suggests that this motor generates large forces by undergoing a conformational change from an extended to a compact state. This transition is proposed to be driven by electrostatic interactions between complementarily charged residues across the interface between the N- and C-terminal domains of gp17. Here we use atomistic molecular dynamics simulations to investigate in detail the molecular interactions and residues involved in such a compaction transition of gp17. We find that although electrostatic interactions between charged residues contribute significantly to the overall free energy change of compaction, interactions mediated by the uncharged residues are equally if not more important. We identify five charged residues and six uncharged residues at the interface that play a dominant role in the compaction transition and also reveal salt bridging, van der Waals, and solvent hydrogen-bonding interactions mediated by these residues in stabilizing the compact form of gp17. The formation of a salt bridge between Glu309 and Arg494 is found to be particularly crucial, consistent with experiments showing complete abrogation in packaging upon Glu309Lys mutation. The computed contributions of several other residues are also found to correlate well with single-molecule measurements of impairments in DNA translocation activity caused by site-directed mutations. Copyright © 2014 Elsevier Ltd. All rights reserved.

Laboratory evaluation of friction loss and compactability of asphalt mixtures.

DOT National Transportation Integrated Search

2012-04-01

This study aimed to develop prediction models for friction loss and laboratory compaction of asphalt : mixtures. In addition, the study evaluated the effect of compaction level and compaction method of skid : resistance and the internal structure of ...

A population of compact elliptical galaxies detected with the Virtual Observatory.

PubMed

Chilingarian, Igor; Cayatte, Véronique; Revaz, Yves; Dodonov, Serguei; Durand, Daniel; Durret, Florence; Micol, Alberto; Slezak, Eric

2009-12-04

Compact elliptical galaxies are characterized by small sizes and high stellar densities. They are thought to form through tidal stripping of massive progenitors. However, only a handful of them were known, preventing us from understanding the role played by this mechanism in galaxy evolution. We present a population of 21 compact elliptical galaxies gathered with the Virtual Observatory. Follow-up spectroscopy and data mining, using high-resolution images and large databases, show that all the galaxies exhibit old metal-rich stellar populations different from those of dwarf elliptical galaxies of similar masses but similar to those of more massive early-type galaxies, supporting the tidal stripping scenario. Their internal properties are reproduced by numerical simulations, which result in compact, dynamically hot remnants resembling the galaxies in our sample.

Prediction of meteor shower of comet 161P/2004 V2

NASA Astrophysics Data System (ADS)

Tomko, D.; Neslušan, L.

2014-07-01

We deal with theoretical meteoroid stream of Halley-type comet 161P/2004 V2. For two perihelion passages in the far past, we model the stream and follow its dynamical evolution until the present. We predict the characteristics of potential meteor showers according to the dynamical properties of artificial particles currently approaching the orbit of the Earth. Our dynamical study reveals that the comet 161P/2004 V2 could have an associated Earth-observable meteor shower, although no significant number of artificial particles are identified with real, photographic, video, or radar meteors. However, the mean radiant of the shower is predicted on the southern sky (its declination is about -23 grad) where a relatively low number of real meteors has been detected and, therefore, recorded in the databases used. The shower of 161P has a compact radiant area and a relatively large geocentric velocity of ~ 53 km/s.

The method of parallel-hierarchical transformation for rapid recognition of dynamic images using GPGPU technology

NASA Astrophysics Data System (ADS)

Timchenko, Leonid; Yarovyi, Andrii; Kokriatskaya, Nataliya; Nakonechna, Svitlana; Abramenko, Ludmila; Ławicki, Tomasz; Popiel, Piotr; Yesmakhanova, Laura

2016-09-01

The paper presents a method of parallel-hierarchical transformations for rapid recognition of dynamic images using GPU technology. Direct parallel-hierarchical transformations based on cluster CPU-and GPU-oriented hardware platform. Mathematic models of training of the parallel hierarchical (PH) network for the transformation are developed, as well as a training method of the PH network for recognition of dynamic images. This research is most topical for problems on organizing high-performance computations of super large arrays of information designed to implement multi-stage sensing and processing as well as compaction and recognition of data in the informational structures and computer devices. This method has such advantages as high performance through the use of recent advances in parallelization, possibility to work with images of ultra dimension, ease of scaling in case of changing the number of nodes in the cluster, auto scan of local network to detect compute nodes.

Novel numerical techniques for magma dynamics

NASA Astrophysics Data System (ADS)

Rhebergen, S.; Katz, R. F.; Wathen, A.; Alisic, L.; Rudge, J. F.; Wells, G.

2013-12-01

We discuss the development of finite element techniques and solvers for magma dynamics computations. These are implemented within the FEniCS framework. This approach allows for user-friendly, expressive, high-level code development, but also provides access to powerful, scalable numerical solvers and a large family of finite element discretisations. With the recent addition of dolfin-adjoint, FeniCS supports automated adjoint and tangent-linear models, enabling the rapid development of Generalised Stability Analysis. The ability to easily scale codes to three dimensions with large meshes, and/or to apply intricate adjoint calculations means that efficiency of the numerical algorithms is vital. We therefore describe our development and analysis of preconditioners designed specifically for finite element discretizations of equations governing magma dynamics. The preconditioners are based on Elman-Silvester-Wathen methods for the Stokes equation, and we extend these to flows with compaction. Our simulations are validated by comparison of results with laboratory experiments on partially molten aggregates.

The Orion Bullets: New GEMS MCAO images

NASA Astrophysics Data System (ADS)

Ginsburg, Adam; Bally, John; Youngblood, Allison

2013-07-01

The Orion A molecular cloud (OMC1) is the nearest site of massive star formation at a distance of 414 pc. The BN/KL region within it contains signs of a massive explosion triggered 500 years ago by decay of a non- hierarchical multiple system of massive stars. We present observations of the OMC1 core at high spatial resolution (<0.1") in narrow-band [Fe II] 1.64um and H2 S(1) 1-0 2.12um filters. The new data reveal compact (0.1" to 0.5") knots with unique excitation and chemical properties, unveiling new details about the three-dimensional structure of the explosion. Bright H2 emission from these compact, high proper-motion knots and compact [Fe II] features are consistent with scenario proposed by Bally et al. (2011) in which they are interpreted to be high density (n > 10^8 cm^{-3}) disk fragments launched from within a few AU of a massive star by a > three-body dynamical interaction that led to the ejection of the BN objects and the formation of a compact (separation < few AU) binary, most likely radio source I. The proper motions are as high as 400 km/s, hinting at the enormous energy unleashed in the explosion. The data also unveiled a population of obscured close binary systems. This new population will allow a comparison of embedded young binary systems with the older, un-obscured, visual binary population to test models of the evolution of multiplicity statistics in the Orion Nebula Cluster.

Formation and Evolution of X-ray Binaries

NASA Astrophysics Data System (ADS)

Fragkos, Anastasios

X-ray binaries - mass-transferring binary stellar systems with compact object accretors - are unique astrophysical laboratories. They carry information about many complex physical processes such as star formation, compact object formation, and evolution of interacting binaries. My thesis work involves the study of the formation and evolution of Galactic and extra-galacticX-ray binaries using both detailed and realistic simulation tools, and population synthesis techniques. I applied an innovative analysis method that allows the reconstruction of the full evolutionary history of known black hole X-ray binaries back to the time of compact object formation. This analysis takes into account all the available observationally determined properties of a system, and models in detail four of its evolutionary evolutionary phases: mass transfer through the ongoing X-ray phase, tidal evolution before the onset of Roche-lobe overflow, motion through the Galactic potential after the formation of the black hole, and binary orbital dynamics at the time of core collapse. Motivated by deep extra-galactic Chandra survey observations, I worked on population synthesis models of low-mass X-ray binaries in the two elliptical galaxies NGC3379 and NGC4278. These simulations were targeted at understanding the origin of the shape and normalization of the observed X-ray luminosity functions. In a follow up study, I proposed a physically motivated prescription for the modeling of transient neutron star low-mass X-ray binary properties, such as duty cycle, outburst duration and recurrence time. This prescription enabled the direct comparison of transient low-mass X-ray binary population synthesis models to the Chandra X-ray survey of the two ellipticals NGC3379 and NGC4278. Finally, I worked on population synthesismodels of black holeX-ray binaries in the MilkyWay. This work was motivated by recent developments in observational techniques for the measurement of black hole spin magnitudes in black hole X-ray binaries. The accuracy of these techniques depend on misalignment of the black hole spin with respect to the orbital angular momentum. In black hole X-ray binaries, this misalignment can occur during the supernova explosion that forms the compact object. In this study, I presented population synthesis models of Galactic black hole X-ray binaries, and examined the distribution of misalignment angles, and its dependence on the model parameters.

Organization and dynamics of yeast mitochondrial nucleoids

PubMed Central

MIYAKAWA, Isamu

2017-01-01

Mitochondrial DNA (mtDNA) is packaged by association with specific proteins in compact DNA-protein complexes named mitochondrial nucleoids (mt-nucleoids). The budding yeast Saccharomyces cerevisiae is able to grow either aerobically or anaerobically. Due to this characteristic, S. cerevisiae has been extensively used as a model organism to study genetics, morphology and biochemistry of mitochondria for a long time. Mitochondria of S. cerevisiae frequently fuse and divide, and perform dynamic morphological changes depending on the culture conditions and the stage of life cycle of the yeast cells. The mt-nucleoids also dynamically change their morphology, accompanying morphological changes of mitochondria. The mt-nucleoids have been isolated morphologically intact and functional analyses of mt-nucleoid proteins have been extensively performed. These studies have revealed that the functions of mt-nucleoid proteins are essential for maintenance of mtDNA. The aims of this review are to summarize the history on the research of yeast mt-nucleoids as well as recent findings on the organization of the mt-nucleoids and mitochondrial dynamics. PMID:28496055

Dynamical Stability and Evolution of Kepler’s compact inner multi-planet systems

NASA Astrophysics Data System (ADS)

Pu, Bonan

2017-06-01

NASA’s Kepler mission has revealed a population of highly compact inner multi-planet systems. These systems, typically consisting of 4-6 super-Earths, feature tight orbital spacing between planets as well as low orbital inclinations (~2 deg. ) and eccentricities (~2%). This stands in contrast to Kepler’s singles population, which appears to feature higher orbital obliquities and eccentricities, as well as a lower transit timing variation fraction indicative of lower true planet multiplicities.In this talk, I will present some previous and ongoing research aimed at understanding the dynamical evolution of these Kepler systems. First, I will present numerical N-body investigations on the long-term stability of multi-planet systems, the results of which suggest that Kepler’s systems are near the edge of stability. Next, I will discuss some current research on the dynamics of planetary close encounters and collisions, and their implications for the ultimate fate of dynamically unstable multi-planet systems. Finally, I will highlight some recent results on the dynamical stability and evolution of inner multi-planet systems when they are accompanied by external giant planet and/or stellar companions.

Compact Ocean Models Enable Onboard AUV Autonomy and Decentralized Adaptive Sampling

DTIC Science & Technology

2014-09-30

1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Compact Ocean Models Enable Onboard AUV Autonomy and...transmitted onboard an AUV . 3. Develop algorithms for adaptive planning of AUV surveys. 4. Demonstrate use of compact ocean models onboard a long...range AUV during a field deployment. Report Documentation Page Form ApprovedOMB No. 0704-0188 Public reporting burden for the collection of

What drives the evolution of Luminous Compact Blue Galaxies in Clusters vs. the Field?

NASA Astrophysics Data System (ADS)

Wirth, Gregory

2017-08-01

Present-day galaxy clusters consist chiefly of low-mass dwarf elliptical galaxies, but the progenitors of this dominant population remain unclear. A prime candidate is the class of objects known as Luminous Compact Blue Galaxies, common in intermediate-reshift clusters but virtually extinct today. Recent cosmological simulations suggest that the present-day dwarfs galaxies begin as irregular field galaxies, undergo an environmentally-driven starburst phase as they enter the cluster, and stop forming stars earlier than their counterparts in the field. This model predicts that cluster dwarfs should have lower stellar mass per unit dynamical mass than their counterparts in the field. We propose a two-pronged archival research program to test this key prediction using the combination of precision photometry from space and high-quality spectroscopy. First, we will combine optical HST/ACS imaging of five z=0.55 clusters (including two HST Frontier Fields) with Spitzer IR imaging and publicly-released Keck/DEIMOS spectroscopy to measure stellar-to-dynamical-mass ratios for a large sample of cluster LCBGs. Second, we will exploit a new catalog of LCBGs in the COSMOS field to gather corresponding data for a significant sample of field LCBGs. By comparing mass ratios from these datasets, we will test theoretical predictions and determine the primary physical driver of cluster dwarf-galaxy evolution.

Documentation of a computer program to simulate aquifer-system compaction using the modular finite-difference ground-water flow model

USGS Publications Warehouse

Leake, S.A.; Prudic, David E.

1991-01-01

Removal of ground water by pumping from aquifers may result in compaction of compressible fine-grained beds that are within or adjacent to the aquifers. Compaction of the sediments and resulting land subsidence may be permanent if the head declines result in vertical stresses beyond the previous maximum stress. The process of permanent compaction is not routinely included in simulations of ground-water flow. To simulate storage changes from both elastic and inelastic compaction, a computer program was written for use with the U.S. Geological Survey modular finite-difference ground- water flow model. The new program, the Interbed-Storage Package, is designed to be incorporated into this model. In the Interbed-Storage Package, elastic compaction or expansion is assumed to be proportional to change in head. The constant of proportionality is the product of the skeletal component of elastic specific storage and the thickness of the sediments. Similarly, inelastic compaction is assumed to be proportional to decline in head. The constant of proportionality is the product of the skeletal component of inelastic specific storage and the thickness of the sediments. Storage changes are incorporated into the ground-water flow model by adding an additional term to the right-hand side of the flow equation. Within a model time step, the package appropriately apportions storage changes between elastic and inelastic components on the basis of the relation of simulated head to the previous minimum (preconsolidation) head. Two tests were performed to verify that the package works correctly. The first test compared model-calculated storage and compaction changes to hand-calculated values for a three-dimensional simulation. Model and hand-calculated values were essentially equal. The second test was performed to compare the results of the Interbed-Storage Package with results of the one-dimensional Helm compaction model. This test problem simulated compaction in doubly draining confining beds stressed by head changes in adjacent aquifers. The Interbed-Storage Package and the Helm model computed essentially equal values of compaction. Documentation of the Interbed-Storage Package includes data input instructions, flow charts, narratives, and listings for each of the five modules included in the package. The documentation also includes an appendix describing input instructions and a listing of a computer program for time-variant specified-head boundaries. That package was developed to reduce the amount of data input and output associated with one of the Interbed-Storage Package test problems.

A compact quantum correction model for symmetric double gate metal-oxide-semiconductor field-effect transistor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cho, Edward Namkyu; Shin, Yong Hyeon; Yun, Ilgu, E-mail: iyun@yonsei.ac.kr

2014-11-07

A compact quantum correction model for a symmetric double gate (DG) metal-oxide-semiconductor field-effect transistor (MOSFET) is investigated. The compact quantum correction model is proposed from the concepts of the threshold voltage shift (ΔV{sub TH}{sup QM}) and the gate capacitance (C{sub g}) degradation. First of all, ΔV{sub TH}{sup QM} induced by quantum mechanical (QM) effects is modeled. The C{sub g} degradation is then modeled by introducing the inversion layer centroid. With ΔV{sub TH}{sup QM} and the C{sub g} degradation, the QM effects are implemented in previously reported classical model and a comparison between the proposed quantum correction model and numerical simulationmore » results is presented. Based on the results, the proposed quantum correction model can be applicable to the compact model of DG MOSFET.« less

Dynamical Localization for Discrete Anderson Dirac Operators

NASA Astrophysics Data System (ADS)

Prado, Roberto A.; de Oliveira, César R.; Carvalho, Silas L.

2017-04-01

We establish dynamical localization for random Dirac operators on the d-dimensional lattice, with d\\in { 1, 2, 3} , in the three usual regimes: large disorder, band edge and 1D. These operators are discrete versions of the continuous Dirac operators and consist in the sum of a discrete free Dirac operator with a random potential. The potential is a diagonal matrix formed by different scalar potentials, which are sequences of independent and identically distributed random variables according to an absolutely continuous probability measure with bounded density and of compact support. We prove the exponential decay of fractional moments of the Green function for such models in each of the above regimes, i.e., (j) throughout the spectrum at larger disorder, (jj) for energies near the band edges at arbitrary disorder and (jjj) in dimension one, for all energies in the spectrum and arbitrary disorder. Dynamical localization in theses regimes follows from the fractional moments method. The result in the one-dimensional regime contrast with one that was previously obtained for 1D Dirac model with Bernoulli potential.

General polytropic self-gravitating cylinder free-fall and accreting mass string with a chain of collapsed objects

NASA Astrophysics Data System (ADS)

Lou, Yu-Qing; Hu, Xu-Yao

2016-06-01

We present a theoretical model framework for general polytropic (GP) hydrodynamic cylinder under self-gravity of infinite length with axial uniformity and axisymmetry. For self-similar dynamic solutions, we derive valuable integrals, analytic asymptotic solutions, sonic critical curves, shock conditions, and global numerical solutions with or without expansion shocks. Among others, we investigate various dynamic solutions featured with central free-fall asymptotic behaviours, corresponding to a collapsed mass string with a sustained dynamic accretion from a surrounding mass reservoir. Depending on the allowed ranges of a scaling index a < -1, such cylindrical dynamic mass accretion rate could be steady, increasing with time and decreasing with time. Physically, such a collapsed mass string or filament would break up into a sequence of sub-clumps and segments as induced by gravitational Jeans instabilities. Depending on the scales involved, such sub-clumps would evolve into collapsed objects or gravitationally bound systems. In diverse astrophysical and cosmological contexts, such a scenario can be adapted on various temporal, spatial and mass scales to form a chain of collapsed clumps and/or compact objects. Examples include the formation of chains of proto-stars, brown dwarfs and gaseous planets along molecular filaments; the formation of luminous massive stars along magnetized spiral arms and circum-nuclear starburst rings in barred spiral galaxies; the formation of chains of compact stellar objects such as white dwarfs, neutron stars, and black holes along a highly condensed mass string. On cosmological scales, one can perceive the formation of chains of galaxies, chains of galaxy clusters or even chains of supermassive and hypermassive black holes in the Universe including the early Universe. All these chains referred to above include possible binaries.

CONSTRAINTS ON MACHO DARK MATTER FROM COMPACT STELLAR SYSTEMS IN ULTRA-FAINT DWARF GALAXIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brandt, Timothy D.

2016-06-20

I show that a recently discovered star cluster near the center of the ultra-faint dwarf galaxy Eridanus II provides strong constraints on massive compact halo objects (MACHOs) of ≳5 M {sub ⊙} as the main component of dark matter. MACHO dark matter will dynamically heat the cluster, driving it to larger sizes and higher velocity dispersions until it dissolves into its host galaxy. The stars in compact ultra-faint dwarf galaxies themselves will be subject to the same dynamical heating; the survival of at least 10 such galaxies places independent limits on MACHO dark matter of masses ≳10 M {sub ⊙}.more » Both Eri II’s cluster and the compact ultra-faint dwarfs are characterized by stellar masses of just a few thousand M {sub ⊙} and half-light radii of 13 pc (for the cluster) and ∼30 pc (for the ultra-faint dwarfs). These systems close the ∼20–100 M {sub ⊙} window of allowed MACHO dark matter and combine with existing constraints from microlensing, wide binaries, and disk kinematics to rule out dark matter composed entirely of MACHOs from ∼10{sup −7} M {sub ⊙} up to arbitrarily high masses.« less

Dynamic analysis of the mechanical seals of the rotor of the labyrinth screw pump

NASA Astrophysics Data System (ADS)

Lebedev, A. Y.; Andrenko, P. M.; Grigoriev, A. L.

2017-08-01

A mathematical model of the work of the mechanical seal with smooth rings made from cast tungsten carbide in the condition of liquid friction is drawn up. A special feature of this model is the allowance for the thermal expansion of a liquid in the gap between the rings; this effect acting in the conjunction with the frictional forces creates additional pressure and lift which in its turn depends on the width of the gap and the speed of sliding. The developed model displays the processes of separation, transportation and heat removal in the compaction elements and also the resistance to axial movement of the ring arising in the gap caused by the pumping effect and the friction in the flowing liquid; the inertia of this fluid is taken into account by the mass reduction method. The linearization of the model is performed and the dynamic characteristics of the transient processes and the forced oscillations of the device are obtained. The conditions imposed on the parameters of the mechanical seal are formulated to provide a regime of the liquid friction, which minimizes the wear.

Models of human platelet thrombospondin in solution. A dynamic light-scattering study.

PubMed Central

Vuillard, L; Clezardin, P; Miller, A

1991-01-01

The translational diffusion coefficient (D20,w) of human platelet thrombospondin was measured by dynamic light-scattering. D20,w, measured in 20 mM-Hepes buffer, pH 7.4, containing 350 mM-NaCl and 2 mM-CaCl2, was 1.73(+/- 0.02) x 10(-7) cm2.s-1. After removal of bound Ca2+ by addition of EDTA, D20,w decreased to 1.56(+/- 0.04) x 10(-7) cm2.s-1; this was not a consequence of aggregation. D20,w showed little sensitivity to NaCl concentration between 130 and 550 mM. Through hydrodynamic analysis combining D20,w and other parameters taken from the literature, two major types of models for thrombospondin can be proposed: either classic compact models (i.e. low degree of hydration) such as prolate or oblate ellipsoids with a high axial ratio (greater than 20) or models of low axial ratio made of multiple subunits with significant cavities (i.e. high degree of hydration). PMID:1902085

The Extreme Spin of the Black Hole in Cygnus X-1

NASA Technical Reports Server (NTRS)

Gou, Lijun; McClintock, Jeffrey E.; Reid, Mark J.; Orosz, Jerome A.; Steiner, James F.; Narayan, Ramesh; Xiang, Jingen; Remillard, Ronald A.; Arnaud, Keith A.; Davis, Shane W.

2011-01-01

The compact primary in the X-ray binary Cygnus X-1 was the first black hole to be established via dynamical observations. We have recently determined accurate values for its mass and distance, and for the orbital inclination angle of the binary. Building on these results, which are based on our favored (asynchronous) dynamical model, we have measured the radius of the inner edge of the black hole s accretion disk by fitting its thermal continuum spectrum to a fully relativistic model of a thin accretion disk. Assuming that the spin axis of the black hole is aligned with the orbital angular momentum vector, we have determined that Cygnus X-1 contains a near-extreme Kerr black hole with a spin parameter a* > 0.95 (3(sigma)). For a less probable (synchronous) dynamical model, we find a. > 0.92 (3 ). In our analysis, we include the uncertainties in black hole mass, orbital inclination angle, and distance, and we also include the uncertainty in the calibration of the absolute flux via the Crab. These four sources of uncertainty totally dominate the error budget. The uncertainties introduced by the thin-disk model we employ are particularly small in this case given the extreme spin of the black hole and the disk s low luminosity.

Cooling, degassing and compaction of rhyolitic ash flow tuffs: a computational model

USGS Publications Warehouse

Riehle, J.R.; Miller, T.F.; Bailey, R.A.

1995-01-01

Previous models of degassing, cooling and compaction of rhyolitic ash flow deposits are combined in a single computational model that runs on a personal computer. The model applies to a broader range of initial and boundary conditions than Riehle's earlier model, which did not integrate heat and mass flux with compaction and which for compound units was limited to two deposits. Model temperatures and gas pressures compare well with simple measured examples. The results indicate that degassing of volatiles present at deposition occurs within days to a few weeks. Compaction occurs for weeks to two to three years unless halted by devitrification; near-emplacement temperatures can persist for tens of years in the interiors of thick deposits. Even modest rainfall significantly chills the upper parts of ash deposits, but compaction in simple cooling units ends before chilling by rainwater influences cooling of the interior of the sheet. Rainfall does, however, affect compaction at the boundaries of deposits in compound cooling units, because the influx of heat from the overlying unit is inadequate to overcome heat previously lost to vaporization of water. Three density profiles from the Matahina Ignimbrite, a compound cooling unit, are fairly well reproduced by the model despite complexities arising from numerous cooling breaks. Uncertainties in attempts to correlate in detail among the profiles may be the result of the non-uniform distribution of individual deposits. Regardless, it is inferred that model compaction is approximately valid. Thus the model should be of use in reconstructing the emplacement history of compound ash deposits, for inferring the depositional environments of ancient deposits and for assessing how long deposits of modern ash flows are capable of generating phreatic eruptions or secondary ash flows. ?? 1995 Springer-Verlag.

Design of a Magnetostrictive-Hydraulic Actuator Considering Nonlinear System Dynamics and Fluid-Structure Coupling

NASA Astrophysics Data System (ADS)

Larson, John Philip

Smart material electro-hydraulic actuators (EHAs) utilize fluid rectification via one-way check valves to amplify the small, high-frequency vibrations of certain smart materials into large motions of a hydraulic cylinder. Although the concept has been demonstrated in previously, the operating frequency of smart material EHA systems has been limited to a small fraction of the available bandwidth of the driver materials. The focus of this work is to characterize and model the mechanical performance of a magnetostrictive EHA considering key system components: rectification valves, smart material driver, and fluid-system components, leading to an improved actuator design relative to prior work. The one-way valves were modeled using 3-D finite element analysis, and their behavior was characterized experimentally by static and dynamic experimental measurement. Taking into account the effect of the fluid and mechanical conditions applied to the valves within the pump, the dynamic response of the valve was quantified and applied to determine rectification bandwidth of different valve configurations. A novel miniature reed valve, designed for a frequency response above 10~kHz, was fabricated and tested within a magnetostrictive EHA. The nonlinear response of the magnetostrictive driver, including saturation and hysteresis effects, was modeled using the Jiles-Atherton approach to calculate the magnetization and the resulting magnetostriction based on the applied field calculated within the rod from Maxwell's equations. The dynamic pressure response of the fluid system components (pumping chamber, hydraulic cylinder, and connecting passages) was measured over a range of input frequencies. For the magnetostrictive EHA tested, the peak performance frequency was found to be limited by the fluid resonances within the system. A lumped-parameter modeling approach was applied to model the overall behavior of a magnetostrictive EHA, incorporating models for the reed valve response, nonlinear magnetostrictive behavior, and fluid behavior (including inertia and compliance). This model was validated by experimental study of a magnetostrictive EHA with a reduced volume manifold. The model was subsequently applied to design a compact magnetostrictive EHA for aircraft applications. Testing of the system shows that the output performance increases with frequency up to a peak unloaded flow rate of 100 cm3/s (6.4 cu in/s) at 1200 Hz, which is a 100% to 500% increase over previous state-of-the-art systems. A blocked differential pressure of 12.1 MPa (1750 psi) was measured, resulting in a power capacity of 310 W, more than 100 W higher than previously reported values. The design and modeling approach used to scale up the performance to create a compact aircraft EHA can also be applied to reduce the size and weight of smart material EHAs for lower power level applications.

A new anisotropic compact star model having Matese & Whitman mass function

NASA Astrophysics Data System (ADS)

Bhar, Piyali; Ratanpal, B. S.

2016-07-01

Present paper proposed a new singularity free model of anisotropic compact star. The Einstein field equations are solved in closed form by utilizing Matese & Whitman mass function. The model parameters ρ, pr and pt all are well behaved inside the stellar interior and our model satisfies all the required conditions to be physically acceptable. The model given in the present work is compatible with observational data of compact objects like SAX J 1808.4-3658 (SS1), SAX J 1808.4-3658 (SS2) and 4U 1820-30. A particular model of 4U 1820-30 is studied in detail and found that it satisfies all the condition needed for physically acceptable model. The present work is the generalization of Sharma and Ratanpal (Int. J. Mod. Phys. D 22:1350074, 2013) model for compact stars admitting quadratic equation of state.

Design, construction and measurements of an alpha magnet as a solution for compact bunch compressor for the electron beam from Thermionic RF Gun

NASA Astrophysics Data System (ADS)

Rajabi, A.; Jazini, J.; Fathi, M.; Sharifian, M.; Shokri, B.

2018-03-01

The beam produced by a thermionic RF gun has wide energy spread that makes it unsuitable for direct usage in photon sources. Here in the present work, we optimize the extracted beam from a thermionic RF gun by a compact economical bunch compressor. A compact magnetic bunch compressor (Alpha magnet) is designed and constructed. A comparison between simulation results and experimental measurements shows acceptable conformity. The beam dynamics simulation results show a reduction of the energy spread as well as a compression of length less than 1 ps with 2.3 mm-mrad emittance.

Observations on infiltration of silicon carbide compacts with an aluminium alloy

NASA Technical Reports Server (NTRS)

Asthana, R.; Rohatgi, P. K.

1992-01-01

The melt infiltration of ceramic particulates permits an opportunity to observe such fundamental materials phenomena as nucleation, dynamic wetting and growth in constrained environments. Experimental observations are presented on the infiltration behavior and matrix microstructures that form when porous compacts of platelet-shaped single crystals of alpha- (hexagonal) silicon carbide are infiltrated with a liquid 2014 Al alloy. The infiltration process involved counter gravity infiltration of suitably tamped and preheated compacts of silicon carbide platelets under an external pressure in a special pressure chamber for a set period, then by solidification of the infiltrant metal in the interstices of the bed at atmospheric pressure.

Modelling the gas kinematics of an atypical Ly α emitting compact dwarf galaxy

NASA Astrophysics Data System (ADS)

Forero-Romero, Jaime E.; Gronke, Max; Remolina-Gutiérrez, Maria Camila; Garavito-Camargo, Nicolás; Dijkstra, Mark

2018-02-01

Star-forming compact dwarf galaxies (CDGs) resemble the expected pristine conditions of the first galaxies in the Universe and are the best systems to test models on primordial galaxy formation and evolution. Here, we report on one of such CDGs, Tololo 1214-277, which presents a broad, single peaked, highly symmetric Ly α emission line that had evaded theoretical interpretation so far. In this paper, we reproduce for the first time these line features with two different physically motivated kinematic models: an interstellar medium composed by outflowing clumps with random motions and an homogeneous gaseous sphere undergoing solid body rotation. The multiphase model requires a clump velocity dispersion of 54.3 ± 0.6 km s-1 with outflows of 54.3 ± 5.1 km s-1 , while the bulk rotation velocity is constrained to be 348^{+75}_{-48} km s-1. We argue that the results from the multiphase model provide a correct interpretation of the data. In that case, the clump velocity dispersion implies a dynamical mass of 2 × 109 M⊙, 10 times its baryonic mass. If future kinematic maps of Tololo 1214-277 confirm the velocities suggested by the multiphase model, it would provide additional support to expect such kinematic state in primordial galaxies, opening the opportunity to use the models and methods presented in this paper to constrain the physics of star formation and feedback in the early generation of Ly α -emitting galaxies.

Numerical damage models using a structural approach: application in bones and ligaments

NASA Astrophysics Data System (ADS)

Arnoux, P. J.; Bonnoit, J.; Chabrand, P.; Jean, M.; Pithioux, M.

2002-01-01

The purpose of the present study was to apply knowledge of structural properties to perform numerical simulations with models of bones and knee ligaments exposed to dynamic tensile loading leading to tissue damage. Compact bones and knee ligaments exhibit the same geometrical pattern in their different levels of structural hierarchy from the tropocollagen molecule to the fibre. Nevertheless, their mechanical behaviours differ considerably at the fibril level. These differences are due to the contribution of the joints in the microfibril-fibril-fibre assembly and to the mechanical properties of the structural components. Two finite element models of the fibrous bone and ligament structure were used to describe damage in terms of elastoplastic laws or joint decohesion processes.

Developing Soil Models for Dynamic Impact Simulations

NASA Technical Reports Server (NTRS)

Fasanella, Edwin L.; Lyle, Karen H.; Jackson, Karen E.

2009-01-01

This paper describes fundamental soils characterization work performed at NASA Langley Research Center in support of the Subsonic Rotary Wing (SRW) Aeronautics Program and the Orion Landing System (LS) Advanced Development Program (ADP). LS-DYNA(Registered TradeMark)1 soil impact model development and test-analysis correlation results are presented for: (1) a 38-ft/s vertical drop test of a composite fuselage section, outfitted with four blocks of deployable energy absorbers (DEA), onto sand, and (2) a series of impact tests of a 1/2-scale geometric boilerplate Orion capsule onto soil. In addition, the paper will discuss LS-DYNA contact analysis at the soil/structure interface, methods used to estimate frictional forces, and the sensitivity of the model to density, moisture, and compaction.

Numerical simulation of mechanical compaction of deepwater shallow sediments

NASA Astrophysics Data System (ADS)

Sun, Jin; Wu, Shiguo; Deng, Jingen; Lin, Hai; Zhang, Hanyu; Wang, Jiliang; Gao, Jinwei

2018-02-01

To study the compaction law and overpressure evolution in deepwater shallow sediments, a large-strain compaction model that considers material nonlinearity and moving boundary is formulated. The model considers the dependence of permeability and material properties on void ratio. The modified Cam-Clay model is selected as the constitutive relations of the sediments, and the deactivation/reactivation method is used to capture the moving top surface during the deposition process. A one-dimensional model is used to study the compaction law of the shallow sediments. Results show that the settlement of the shallow sediments is large under their own weight during compaction. The void ratio decreases strictly with burial depth and decreases more quickly near the seafloor than in the deeper layers. The generation of abnormal pressure in the shallow flow sands is closely related to the compaction law of shallow sediments. The two main factors that affect the generation of overpressure in the sands are deposition rate and permeability of overlying clay sediments. Overpressure increases with an increase in deposition rate and a decrease in the permeability of the overlying clay sediment. Moreover, an upper limit for the overpressure exists. A two-dimensional model is used to study the differential compaction of the shallow sediments. The pore pressure will still increase due to the inflow of the pore fluid from the neighboring clay sediment even though the deposition process is interrupted.

Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes

PubMed Central

Collepardo-Guevara, Rosana; Schlick, Tamar

2012-01-01

Monte Carlo simulations of a mesoscale model of oligonucleosomes are analyzed to examine the role of dynamic-linker histone (LH) binding/unbinding in high monovalent salt with divalent ions, and to further interpret noted chromatin fiber softening by dynamic LH in monovalent salt conditions. We find that divalent ions produce a fiber stiffening effect that competes with, but does not overshadow, the dramatic softening triggered by dynamic-LH behavior. Indeed, we find that in typical in vivo conditions, dynamic-LH binding/unbinding reduces fiber stiffening dramatically (by a factor of almost 5, as measured by the elasticity modulus) compared with rigidly fixed LH, and also the force needed to initiate chromatin unfolding, making it consistent with those of molecular motors. Our data also show that, during unfolding, divalent ions together with LHs induce linker-DNA bending and DNA–DNA repulsion screening, which guarantee formation of heteromorphic superbeads-on-a-string structures that combine regions of loose and compact fiber independently of the characteristics of the LH–core bond. These structures might be important for gene regulation as they expose regions of the DNA selectively. Dynamic control of LH binding/unbinding, either globally or locally, in the presence of divalent ions, might constitute a mechanism for regulation of gene expression. PMID:22790986

Future Carbon Dynamics of the Northern Rockies Ecoregion due to Climate Impacts and Fire Effects

NASA Astrophysics Data System (ADS)

Weller, U.; Lang, B.; Rabot, E.; Stössel, B.; Urbanski, L.; Vogel, H. J.; Wiesmeier, M.; Wollschlaeger, U.

2016-12-01

The impact of agricultural management on soil functions is manifold and severe. It has both positive and adverse influence. Our goal is to develop model tools quantifying the agricultural impact on soil functions based on a mechanistic understanding of soil processes to support farmers and decision makers. The modeling approach is based on defining relevant soil components, i.e. soil matrix, macropores, organisms, roots and organic matter. They interact and form the soil's macroscopic properties and functions including water and gas dynamics, and biochemical cycles. Based on existing literature information we derive functional interaction processes and combine them in a network of dynamic soil components. In agricultural soils, a major issue is linked to changes in soil structure and their influence on water dynamics. Compaction processes are well studied in literature, but for the resilience due to root growth and activity of soil organisms the information is scarcer. We implement structural dynamics into soil water and gas simulations using a lumped model that is both coarse enough to allow extensive model runs while still preserving some important, yet rarely modeled phenomenons like preferential flow, hysteretic and dynamic behavior. For simulating water dynamics, at each depth, the model assumes water at different binding energies depending on soil structure, i.e. the pore size distribution. Non-equilibrium is postulated, meaning that free water may occur even if the soil is not fully saturated. All energy levels are interconnected allowing water to move, both within a spatial node, and between neighboring nodes (adding gravity). Structure dynamics alters the capacity of this water compartments, and the conductance of its connections. Connections are switched on and off depending on whether their sources contain water or their targets have free capacity. This leads to piecewise linear system behavior that allows fast calculation for extended time steps. Based on this concept, the dynamics of soil structure can be directly linked to soil water dynamics as a main driver for other soil processes. Further steps will include integration of temperature and solute leaching as well as defining the feedback of the water regime on the structure forming processes.

MODFLOW Ground-Water Model - User Guide to the Subsidence and Aquifer-System Compaction Package (SUB-WT) for Water-Table Aquifers

USGS Publications Warehouse

Leake, S.A.; Galloway, D.L.

2007-01-01

A new computer program was developed to simulate vertical compaction in models of regional ground-water flow. The program simulates ground-water storage changes and compaction in discontinuous interbeds or in extensive confining units, accounting for stress-dependent changes in storage properties. The new program is a package for MODFLOW, the U.S. Geological Survey modular finite-difference ground-water flow model. Several features of the program make it useful for application in shallow, unconfined flow systems. Geostatic stress can be treated as a function of water-table elevation, and compaction is a function of computed changes in effective stress at the bottom of a model layer. Thickness of compressible sediments in an unconfined model layer can vary in proportion to saturated thickness.

Intelligent processing for thick composites

NASA Astrophysics Data System (ADS)

Shin, Daniel Dong-Ok

2000-10-01

Manufacturing thick composite parts are associated with adverse curing conditions such as large in-plane temperature gradient and exotherms. The condition is further aggravated because the manufacturer's cycle and the existing cure control systems do not adequately counter such affects. In response, the forecast-based thermal control system is developed to have better cure control for thick composites. Accurate cure kinetic model is crucial for correctly identifying the amount of heat generated for composite process simulation. A new technique for identifying cure parameters for Hercules AS4/3502 prepreg is presented by normalizing the DSC data. The cure kinetics is based on an autocatalytic model for the proposed method, which uses dynamic and isothermal DSC data to determine its parameters. Existing models are also used to determine kinetic parameters but rendered inadequate because of the material's temperature dependent final degree of cure. The model predictions determined from the new technique showed good agreement to both isothermal and dynamic DSC data. The final degree of cure was also in good agreement with experimental data. A realistic cure simulation model including bleeder ply analysis and compaction is validated with Hercules AS4/3501-6 based laminates. The nonsymmetrical temperature distribution resulting from the presence of bleeder plies agreed well to the model prediction. Some of the discrepancies in the predicted compaction behavior were attributed to inaccurate viscosity and permeability models. The temperature prediction was quite good for the 3cm laminate. The validated process simulation model along with cure kinetics model for AS4/3502 prepreg were integrated into the thermal control system. The 3cm Hercules AS4/3501-6 and AS4/3502 laminate were fabricated. The resulting cure cycles satisfied all imposed requirements by minimizing exotherms and temperature gradient. Although the duration of the cure cycles increased, such phenomena was inevitable since longer time was required to maintain acceptable temperature gradient. The derived cure cycles were slightly different than what was anticipated by the offline simulation. Nevertheless, the system adapted to unanticipated events to satisfy the cure requirements.

Design and evaluation of a DAMQ multiprocessor network with self-compacting buffers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Park, J.; O`Krafka, B.W.O.; Vassiliadis, S.

1994-12-31

This paper describes a new approach to implement Dynamically Allocated Multi-Queue (DAMQ) switching elements using a technique called ``self-compacting buffers``. This technique is efficient in that the amount of hardware required to manage the buffers is relatively small; it offers high performance since it is an implementation of a DAMQ. The first part of this paper describes the self-compacting buffer architecture in detail, and compares it against a competing DAMQ switch design. The second part presents extensive simulation results comparing the performance of a self compacting buffer switch against an ideal switch including several examples of k-ary n-cubes and deltamore » networks. In addition, simulation results show how the performance of an entire network can be quickly and accurately approximated by simulating just a single switching element.« less

A novel compact compliant actuator design for rehabilitation robots.

PubMed

Yu, Haoyong; Huang, Sunan; Thakor, Nitish V; Chen, Gong; Toh, Siew-Lok; Sta Cruz, Manolo; Ghorbel, Yassine; Zhu, Chi

2013-06-01

Rehabilitation robots have direct physical interaction with human body. Ideally, actuators for rehabilitation robots should be compliant, force controllable, and back drivable due to safety and control considerations. Various designs of Series Elastic Actuators (SEA) have been developed for these applications. However, current SEA designs face a common performance limitation due to the compromise on the spring stiffness selection. This paper presents a novel compact compliant force control actuator design for portable rehabilitation robots to overcome the performance limitations in current SEAs. Our design consists of a servomotor, a ball screw, a torsional spring between the motor and the ball screw, and a set of translational springs between the ball screw nut and the external load. The soft translational springs are used to handle the low force operation and reduce output impedance, stiction, and external shock load. The torsional spring, being in the high speed range, has high effective stiffness and improves the system bandwidth in large force operation when the translational springs are fully compressed. This design is also more compact due to the smaller size of the springs. We explain the construction and the working principle of our new design, followed by the dynamic modeling and analysis of the actuator. We also show the preliminary testing results of a prototype actuator designed for a lower limb exoskeleton for gait rehabilitation.

Quantifying the heterogeneity of soil compaction, physical soil properties and soil moisture across multiple spatial scales

NASA Astrophysics Data System (ADS)

Coates, Victoria; Pattison, Ian; Sander, Graham

2016-04-01

England's rural landscape is dominated by pastoral agriculture, with 40% of land cover classified as either improved or semi-natural grassland according to the Land Cover Map 2007. Since the Second World War the intensification of agriculture has resulted in greater levels of soil compaction, associated with higher stocking densities in fields. Locally compaction has led to loss of soil storage and an increased in levels of ponding in fields. At the catchment scale soil compaction has been hypothesised to contribute to increased flood risk. Previous research (Pattison, 2011) on a 40km2 catchment (Dacre Beck, Lake District, UK) has shown that when soil characteristics are homogeneously parameterised in a hydrological model, downstream peak discharges can be 65% higher for a heavy compacted soil than for a lightly compacted soil. However, at the catchment scale there is likely to be a significant amount of variability in compaction levels within and between fields, due to multiple controlling factors. This research focusses in on one specific type of land use (permanent pasture with cattle grazing) and areas of activity within the field (feeding area, field gate, tree shelter, open field area). The aim was to determine if the soil characteristics and soil compaction levels are homogeneous in the four areas of the field. Also, to determine if these levels stayed the same over the course of the year, or if there were differences at the end of the dry (October) and wet (April) periods. Field experiments were conducted in the River Skell catchment, in Yorkshire, UK, which has an area of 120km2. The dynamic cone penetrometer was used to determine the structural properties of the soil, soil samples were collected to assess the bulk density, organic matter content and permeability in the laboratory and the Hydrosense II was used to determine the soil moisture content in the topsoil. Penetration results show that the tree shelter is the most compacted and the open field area is least compacted in both periods. The falling head test showed that soil permeability was lowest around the feeding area and highest in the open field area in both periods. Laboratory tests showed that the tree shelter had the lowest bulk density values, due to the higher levels of organic matter content and the field gate had the highest levels of bulk density in both periods. There was also a significant difference in bulk density at the field gate and open field areas between the two periods. These results highlight statistically significant differences between heavily compacted areas where animals congregate and less-trampled areas of the field.

25 CFR 1000.163 - Can a Tribe/Consortium negotiate other terms and conditions not contained in the model compact?

Code of Federal Regulations, 2010 CFR

2010-04-01

... conditions not contained in the model compact? 1000.163 Section 1000.163 Indians OFFICE OF THE ASSISTANT SECRETARY, INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR ANNUAL FUNDING AGREEMENTS UNDER THE TRIBAL SELF... Funding Agreements Negotiating A Self-Governance Compact § 1000.163 Can a Tribe/Consortium negotiate other...

Dynamical equivalence, the origin of the Galactic field stellar and binary population, and the initial radius-mass relation of embedded clusters

NASA Astrophysics Data System (ADS)

Belloni, Diogo; Kroupa, Pavel; Rocha-Pinto, Helio J.; Giersz, Mirek

2018-03-01

In order to allow a better understanding of the origin of Galactic field populations, dynamical equivalence of stellar-dynamical systems has been postulated by Kroupa and Belloni et al. to allow mapping of solutions of the initial conditions of embedded clusters such that they yield, after a period of dynamical processing, the Galactic field population. Dynamically equivalent systems are defined to initially and finally have the same distribution functions of periods, mass ratios and eccentricities of binary stars. Here, we search for dynamically equivalent clusters using the MOCCA code. The simulations confirm that dynamically equivalent solutions indeed exist. The result is that the solution space is next to identical to the radius-mass relation of Marks & Kroupa, ( r_h/pc )= 0.1^{+0.07}_{-0.04} ( M_ecl/M_{⊙} )^{0.13± 0.04}. This relation is in good agreement with the oIMF. This is achieved by applying a similar procedurebserved density of molecular cloud clumps. According to the solutions, the time-scale to reach dynamical equivalence is about 0.5 Myr which is, interestingly, consistent with the lifetime of ultra-compact H II regions and the time-scale needed for gas expulsion to be active in observed very young clusters as based on their dynamical modelling.

Constraints on the rheology of the partially molten mantle from numerical models of laboratory experiments

NASA Astrophysics Data System (ADS)

Rudge, J. F.; Alisic Jewell, L.; Rhebergen, S.; Katz, R. F.; Wells, G. N.

2015-12-01

One of the fundamental components in any dynamical model of melt transport is the rheology of partially molten rock. This rheology is poorly understood, and one way in which a better understanding can be obtained is by comparing the results of laboratory deformation experiments to numerical models. Here we present a comparison between numerical models and the laboratory setup of Qi et al. 2013 (EPSL), where a cylinder of partially molten rock containing rigid spherical inclusions was placed under torsion. We have replicated this setup in a finite element model which solves the partial differential equations describing the mechanical process of compaction. These computationally-demanding 3D simulations are only possible due to the recent development of a new preconditioning method for the equations of magma dynamics. The experiments show a distinct pattern of melt-rich and melt-depleted regions around the inclusions. In our numerical models, the pattern of melt varies with key rheological parameters, such as the ratio of bulk to shear viscosity, and the porosity- and strain-rate-dependence of the shear viscosity. These observed melt patterns therefore have the potential to constrain rheological properties. While there are many similarities between the experiments and the numerical models, there are also important differences, which highlight the need for better models of the physics of two-phase mantle/magma dynamics. In particular, the laboratory experiments display more pervasive melt-rich bands than is seen in our numerics.

Accretion of a symmetry-breaking scalar field by a Schwarzschild black hole.

PubMed

Traykova, Dina; Braden, Jonathan; Peiris, Hiranya V

2018-03-06

We simulate the behaviour of a Higgs-like field in the vicinity of a Schwarzschild black hole using a highly accurate numerical framework. We consider both the limit of the zero-temperature Higgs potential and a toy model for the time-dependent evolution of the potential when immersed in a slowly cooling radiation bath. Through these numerical investigations, we aim to improve our understanding of the non-equilibrium dynamics of a symmetry-breaking field (such as the Higgs) in the vicinity of a compact object such as a black hole. Understanding this dynamics may suggest new approaches for studying properties of scalar fields using black holes as a laboratory.This article is part of the Theo Murphy meeting issue 'Higgs Cosmology'. © 2018 The Author(s).

Distinct polymer physics principles govern chromatin dynamics in mouse and Drosophila topological domains.

PubMed

Ea, Vuthy; Sexton, Tom; Gostan, Thierry; Herviou, Laurie; Baudement, Marie-Odile; Zhang, Yunzhe; Berlivet, Soizik; Le Lay-Taha, Marie-Noëlle; Cathala, Guy; Lesne, Annick; Victor, Jean-Marc; Fan, Yuhong; Cavalli, Giacomo; Forné, Thierry

2015-08-15

In higher eukaryotes, the genome is partitioned into large "Topologically Associating Domains" (TADs) in which the chromatin displays favoured long-range contacts. While a crumpled/fractal globule organization has received experimental supports at higher-order levels, the organization principles that govern chromatin dynamics within these TADs remain unclear. Using simple polymer models, we previously showed that, in mouse liver cells, gene-rich domains tend to adopt a statistical helix shape when no significant locus-specific interaction takes place. Here, we use data from diverse 3C-derived methods to explore chromatin dynamics within mouse and Drosophila TADs. In mouse Embryonic Stem Cells (mESC), that possess large TADs (median size of 840 kb), we show that the statistical helix model, but not globule models, is relevant not only in gene-rich TADs, but also in gene-poor and gene-desert TADs. Interestingly, this statistical helix organization is considerably relaxed in mESC compared to liver cells, indicating that the impact of the constraints responsible for this organization is weaker in pluripotent cells. Finally, depletion of histone H1 in mESC alters local chromatin flexibility but not the statistical helix organization. In Drosophila, which possesses TADs of smaller sizes (median size of 70 kb), we show that, while chromatin compaction and flexibility are finely tuned according to the epigenetic landscape, chromatin dynamics within TADs is generally compatible with an unconstrained polymer configuration. Models issued from polymer physics can accurately describe the organization principles governing chromatin dynamics in both mouse and Drosophila TADs. However, constraints applied on this dynamics within mammalian TADs have a peculiar impact resulting in a statistical helix organization.

A study on the dependence of nuclear viscosity on temperature

NASA Astrophysics Data System (ADS)

Vardaci, E.; Di Nitto, A.; Nadtochy, P. N.; La Rana, G.; Cinausero, M.; Prete, G.; Gelli, N.; Ashaduzzaman, M.; Davide, F.; Pulcini, A.; Quero, D.; Kozulin, E. M.; Knyazheva, G. N.; Itkis, I. M.

2018-05-01

Nuclear viscosity is an irreplaceable ingredient of nuclear fission collective dynamical models. It drives the exchange of energy between the collective variables and the thermal bath of single particle degrees of freedom. Its dependence on the shape and temperature is a matter of controversy. By using systems of intermediate fissility we have demonstrated in a recent study that the viscosity parameters is larger for compact shapes, and decreases for larger deformations of the fissioning system, at variance with the conclusions of the statistical model modified to include empirically viscosity and time scales. In this contribution we propose an experimental scenario to highlight the possible dependence of the viscosity from the temperature.

Bit-systolic arithmetic arrays using dynamic differential gallium arsenide circuits

NASA Technical Reports Server (NTRS)

Beagles, Grant; Winters, Kel; Eldin, A. G.

1992-01-01

A new family of gallium arsenide circuits for fine grained bit-systolic arithmetic arrays is introduced. This scheme combines features of two recent techniques of dynamic gallium arsenide FET logic and differential dynamic single-clock CMOS logic. The resulting circuits are fast and compact, with tightly constrained series FET propagation paths, low fanout, no dc power dissipation, and depletion FET implementation without level shifting diodes.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pavlou, A. T.; Betzler, B. R.; Burke, T. P.

Uncertainties in the composition and fabrication of fuel compacts for the Fort St. Vrain (FSV) high temperature gas reactor have been studied by performing eigenvalue sensitivity studies that represent the key uncertainties for the FSV neutronic analysis. The uncertainties for the TRISO fuel kernels were addressed by developing a suite of models for an 'average' FSV fuel compact that models the fuel as (1) a mixture of two different TRISO fuel particles representing fissile and fertile kernels, (2) a mixture of four different TRISO fuel particles representing small and large fissile kernels and small and large fertile kernels and (3)more » a stochastic mixture of the four types of fuel particles where every kernel has its diameter sampled from a continuous probability density function. All of the discrete diameter and continuous diameter fuel models were constrained to have the same fuel loadings and packing fractions. For the non-stochastic discrete diameter cases, the MCNP compact model arranged the TRISO fuel particles on a hexagonal honeycomb lattice. This lattice-based fuel compact was compared to a stochastic compact where the locations (and kernel diameters for the continuous diameter cases) of the fuel particles were randomly sampled. Partial core configurations were modeled by stacking compacts into fuel columns containing graphite. The differences in eigenvalues between the lattice-based and stochastic models were small but the runtime of the lattice-based fuel model was roughly 20 times shorter than with the stochastic-based fuel model. (authors)« less

Development of compact explosively driven ferromagnetic seed source for helical magnetic flux compression generator

NASA Astrophysics Data System (ADS)

Liu, Peng; Zhang, He; Ma, Shaojie; Shi, Yunlei

2018-05-01

A compact explosively driven ferromagnetic generator (FMG) is developed for seed power source of helical magnetic flux compression generator (HMFCG). The mechanism of FMG is studied by establishing a magnetoelectric conversion model. Analytical calculations and numerical simulations are conducted on the magnetostatic field of open-circuit magnet in FMG. The calculation method for the magnet's cross-sectional magnetic flux is obtained. The pulse sources made of different materials and equipped with different initiation modes are experimentally explored. Besides, the dynamic coupling experiments of FMG and HMFCG are carried out. The results show that, N35 single-ended and double-ended initiating FMGs have an energy conversion efficiency ηt not less than 14.6% and 24.4%, respectively; FMG has an output pulse current not less than 4kA and an energy of about 3J on 320nH inductive load; HMFCG experiences energy gains of about 2-3 times. FMG and HMFCG can be coupled to form a full-blast electrical driving pulse source.

The Atmospheric Dynamics of Alpha Tau (K5 III) -- Clues to Understanding the Magnetic Dynamo

NASA Technical Reports Server (NTRS)

Carpenter Kenneth G.

2008-01-01

Using HST/GHRS, HST/STIS and FUSE archival data for (alpha) Tau and the CHIANTI spectroscopic code, we have derived line shifts, volumetric emission measures, and plasma density estimates, and calculated filling factors for a number of UV lines forming between 10,000 K and 300,000 K in the outer atmosphere of this red giant star. The data suggest the presence of low-temperature extended regions and high-temperature compact regions, associated with magnetically open and closed structures in the stellar atmosphere, respectively. The signatures of UV lines from Alpha Tau can be consistently understood via a model of upward-traveling Alfven waves in a gravitationally stratified atmosphere. These wakes cause non-thermal broadening in UV lines due to unresolved wave motions and downward plasma motions in compact magnetic loops heated by resonant .4lf\\en wave heating. We discuss implications of this interpretation for understanding the nature of magnetic dynamos operating in late-type giants.

The Optical Green Valley Versus Mid-infrared Canyon in Compact Groups

NASA Technical Reports Server (NTRS)

Walker, Lisa May; Butterfield, Natalie; Johnson, Kelsey; Zucker, Catherine; Gallagher, Sarah; Konstantopoulos, Iraklis; Zabludoff, Ann; Hornschemeier, Ann E.; Tzanavaris, Panayiotis; Charlton, Jane C.

2013-01-01

Compact groups of galaxies provide conditions similar to those experienced by galaxies in the earlier universe. Recent work on compact groups has led to the discovery of a dearth of mid-infrared transition galaxies (MIRTGs) in Infrared Array Camera (3.6-8.0 micrometers) color space as well as at intermediate specific star formation rates. However, we find that in compact groups these MIRTGs have already transitioned to the optical ([g-r]) red sequence. We investigate the optical color-magnitude diagram (CMD) of 99 compact groups containing 348 galaxies and compare the optical CMD with mid-infrared (mid-IR) color space for compact group galaxies. Utilizing redshifts available from Sloan Digital Sky Survey, we identified new galaxy members for four groups. By combining optical and mid-IR data, we obtain information on both the dust and the stellar populations in compact group galaxies. We also compare with more isolated galaxies and galaxies in the Coma Cluster, which reveals that, similar to clusters, compact groups are dominated by optically red galaxies. While we find that compact group transition galaxies lie on the optical red sequence, LVL (Local Volume Legacy) + (plus) SINGS (Spitzer Infrared Nearby Galaxies Survey) mid-IR (infrared) transition galaxies span the range of optical colors. The dearth of mid-IR transition galaxies in compact groups may be due to a lack of moderately star-forming low mass galaxies; the relative lack of these galaxies could be due to their relatively small gravitational potential wells. This makes them more susceptible to this dynamic environment, thus causing them to more easily lose gas or be accreted by larger members.

Investigating the Structural Compaction of Biomolecules Upon Transition to the Gas-Phase Using ESI-TWIMS-MS.

PubMed

Devine, Paul W A; Fisher, Henry C; Calabrese, Antonio N; Whelan, Fiona; Higazi, Daniel R; Potts, Jennifer R; Lowe, David C; Radford, Sheena E; Ashcroft, Alison E

2017-09-01

Collision cross-section (CCS) measurements obtained from ion mobility spectrometry-mass spectrometry (IMS-MS) analyses often provide useful information concerning a protein's size and shape and can be complemented by modeling procedures. However, there have been some concerns about the extent to which certain proteins maintain a native-like conformation during the gas-phase analysis, especially proteins with dynamic or extended regions. Here we have measured the CCSs of a range of biomolecules including non-globular proteins and RNAs of different sequence, size, and stability. Using traveling wave IMS-MS, we show that for the proteins studied, the measured CCS deviates significantly from predicted CCS values based upon currently available structures. The results presented indicate that these proteins collapse to different extents varying on their elongated structures upon transition into the gas-phase. Comparing two RNAs of similar mass but different solution structures, we show that these biomolecules may also be susceptible to gas-phase compaction. Together, the results suggest that caution is needed when predicting structural models based on CCS data for RNAs as well as proteins with non-globular folds. Graphical Abstract ᅟ.

Accurate lithography simulation model based on convolutional neural networks

NASA Astrophysics Data System (ADS)

Watanabe, Yuki; Kimura, Taiki; Matsunawa, Tetsuaki; Nojima, Shigeki

2017-07-01

Lithography simulation is an essential technique for today's semiconductor manufacturing process. In order to calculate an entire chip in realistic time, compact resist model is commonly used. The model is established for faster calculation. To have accurate compact resist model, it is necessary to fix a complicated non-linear model function. However, it is difficult to decide an appropriate function manually because there are many options. This paper proposes a new compact resist model using CNN (Convolutional Neural Networks) which is one of deep learning techniques. CNN model makes it possible to determine an appropriate model function and achieve accurate simulation. Experimental results show CNN model can reduce CD prediction errors by 70% compared with the conventional model.

Endoluminal ultrasound applicator configurations utilizing deployable arrays, reflectors and lenses to augment and dynamically adjust treatment volume, gain, and depth

NASA Astrophysics Data System (ADS)

Adams, Matthew S.; Salgaonkar, Vasant A.; Sommer, Graham; Diederich, Chris J.

2017-02-01

Endoluminal high-intensity ultrasound offers spatially-precise thermal ablation of tissues adjacent to body lumens, but is constrained in treatment volume and penetration depth by the effective aperture of integrated transducers, which are limited in size to enable delivery through anatomical passages, endoscopic instrumentation, or laparoscopic ports. This study introduced and investigated three distinct endoluminal ultrasound applicator designs that can be delivered in a compact state then deployed or expanded at the target luminal site to increase the effective therapeutic aperture. The first design incorporated an array of planar transducers which could be unfolded at specific angles of convergence between the transducers. Two alternative designs consisted of fixed transducer sources surrounded by an expandable multicompartment balloon that contained acoustic reflector and dynamically-adjustable fluid lenses compartments. Parametric studies of acoustic output were performed across device design parameters via the rectangular radiator and secondary sources methods. Biothermal models were used to simulate resulting temperature distributions in three-dimensional heterogeneous tissue models. Simulations indicate that a deployable transducer array can increase volumetric coverage and penetration depth by 80% and 20%, respectively, while permitting more conformal thermal lesion shapes based on the degree of convergence between the transducers. The applicator designs incorporating reflector and fluid lenses demonstrated enhanced focal gain and penetration depth that increased with the diameter of the expanded reflector-lens balloon. Thermal simulations of assemblies with 12 mm compact profiles and 50 mm expanded balloon diameters demonstrated generation of localized thermal lesions at depths up to 10 cm in liver tissue.

Phase-change memory: A continuous multilevel compact model of subthreshold conduction and threshold switching

NASA Astrophysics Data System (ADS)

Pigot, Corentin; Gilibert, Fabien; Reyboz, Marina; Bocquet, Marc; Zuliani, Paola; Portal, Jean-Michel

2018-04-01

Phase-change memory (PCM) compact modeling of the threshold switching based on a thermal runaway in Poole–Frenkel conduction is proposed. Although this approach is often used in physical models, this is the first time it is implemented in a compact model. The model accuracy is validated by a good correlation between simulations and experimental data collected on a PCM cell embedded in a 90 nm technology. A wide range of intermediate states is measured and accurately modeled with a single set of parameters, allowing multilevel programing. A good convergence is exhibited even in snapback simulation owing to this fully continuous approach. Moreover, threshold properties extraction indicates a thermally enhanced switching, which validates the basic hypothesis of the model. Finally, it is shown that this model is compliant with a new drift-resilient cell-state metric. Once enriched with a phase transition module, this compact model is ready to be implemented in circuit simulators.

The influence of API concentration on the roller compaction process: modeling and prediction of the post compacted ribbon, granule and tablet properties using multivariate data analysis.

PubMed

Boersen, Nathan; Carvajal, M Teresa; Morris, Kenneth R; Peck, Garnet E; Pinal, Rodolfo

2015-01-01

While previous research has demonstrated roller compaction operating parameters strongly influence the properties of the final product, a greater emphasis might be placed on the raw material attributes of the formulation. There were two main objectives to this study. First, to assess the effects of different process variables on the properties of the obtained ribbons and downstream granules produced from the rolled compacted ribbons. Second, was to establish if models obtained with formulations of one active pharmaceutical ingredient (API) could predict the properties of similar formulations in terms of the excipients used, but with a different API. Tolmetin and acetaminophen, chosen for their different compaction properties, were roller compacted on Fitzpatrick roller compactor using the same formulation. Models created using tolmetin and tested using acetaminophen. The physical properties of the blends, ribbon, granule and tablet were characterized. Multivariate analysis using partial least squares was used to analyze all data. Multivariate models showed that the operating parameters and raw material attributes were essential in the prediction of ribbon porosity and post-milled particle size. The post compacted ribbon and granule attributes also significantly contributed to the prediction of the tablet tensile strength. Models derived using tolmetin could reasonably predict the ribbon porosity of a second API. After further processing, the post-milled ribbon and granules properties, rather than the physical attributes of the formulation were needed to predict downstream tablet properties. An understanding of the percolation threshold of the formulation significantly improved the predictive ability of the models.

BEAM DYNAMICS STUDIES FOR A COMPACT CARBON ION LINAC FOR THERAPY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Plastun, A.; Mustapha, B.; Nassiri, A.

2016-05-01

Feasibility of an Advanced Compact Carbon Ion Linac (ACCIL) for hadron therapy is being studied at Argonne National Laboratory in collaboration with RadiaBeam Technologies. The 45-meter long linac is designed to deliver 109 carbon ions per second with variable energy from 45 MeV/u to 450 MeV/u. S-band structure provides the acceleration in this range. The carbon beam energy can be adjusted from pulse to pulse, making 3D tumor scanning straightforward and fast. Front end accelerating structures such as RFQ, DTL and coupled DTL are designed to operate at lower frequencies. The design of the linac was accompanied with extensive end-to-endmore » beam dynamics studies which are presented in this paper.« less

The dynamic ejecta of compact object mergers and eccentric collisions.

PubMed

Rosswog, Stephan

2013-06-13

Compact object mergers eject neutron-rich matter in a number of ways: by the dynamical ejection mediated by gravitational torques, as neutrino-driven winds, and probably also a good fraction of the resulting accretion disc finally becomes unbound by a combination of viscous and nuclear processes. If compact binary mergers indeed produce gamma-ray bursts, there should also be an interaction region where an ultra-relativistic outflow interacts with the neutrino-driven wind and produces moderately relativistic ejecta. Each type of ejecta has different physical properties, and therefore plays a different role for nucleosynthesis and for the electromagnetic (EM) transients that go along with compact object encounters. Here, we focus on the dynamic ejecta and present results for over 30 hydrodynamical simulations of both gravitational wave-driven mergers and parabolic encounters as they may occur in globular clusters. We find that mergers eject approximately 1 per cent of a Solar mass of extremely neutron-rich material. The exact amount, as well as the ejection velocity, depends on the involved masses with asymmetric systems ejecting more material at higher velocities. This material undergoes a robust r-process and both ejecta amount and abundance pattern are consistent with neutron star mergers being a major source of the 'heavy' (A>130) r-process isotopes. Parabolic collisions, especially those between neutron stars and black holes, eject substantially larger amounts of mass, and therefore cannot occur frequently without overproducing gala- ctic r-process matter. We also discuss the EM transients that are powered by radioactive decays within the ejecta ('macronovae'), and the radio flares that emerge when the ejecta dissipate their large kinetic energies in the ambient medium.

Dynamical theory of dense groups of galaxies

NASA Technical Reports Server (NTRS)

Mamon, Gary A.

1990-01-01

It is well known that galaxies associate in groups and clusters. Perhaps 40% of all galaxies are found in groups of 4 to 20 galaxies (e.g., Tully 1987). Although most groups appear to be so loose that the galaxy interactions within them ought to be insignificant, the apparently densest groups, known as compact groups appear so dense when seen in projection onto the plane of the sky that their members often overlap. These groups thus appear as dense as the cores of rich clusters. The most popular catalog of compact groups, compiled by Hickson (1982), includes isolation among its selection critera. Therefore, in comparison with the cores of rich clusters, Hickson's compact groups (HCGs) appear to be the densest isolated regions in the Universe (in galaxies per unit volume), and thus provide in principle a clean laboratory for studying the competition of very strong gravitational interactions. The $64,000 question here is then: Are compact groups really bound systems as dense as they appear? If dense groups indeed exist, then one expects that each of the dynamical processes leading to the interaction of their member galaxies should be greatly enhanced. This leads us to the questions: How stable are dense groups? How do they form? And the related question, fascinating to any theorist: What dynamical processes predominate in dense groups of galaxies? If HCGs are not bound dense systems, but instead 1D change alignments (Mamon 1986, 1987; Walke & Mamon 1989) or 3D transient cores (Rose 1979) within larger looser systems of galaxies, then the relevant question is: How frequent are chance configurations within loose groups? Here, the author answers these last four questions after comparing in some detail the methods used and the results obtained in the different studies of dense groups.

Flow and compaction properties of hypromellose: new directly compressible versus the established grades.

PubMed

Grdešič, Peter; Vrečer, Franc; Ilić, Ilija

2016-11-01

Information about flow and compaction properties of hypromellose (HPMC) polymers is essential for the technologists who are facing challenges regarding poor flow and compaction while developing new controlled release matrix tablets. There is a profound lack of studies in this field and none of the published ones deal with the compaction of the newly introduced HPMC grades specifically designed for direct compression (DC). The objective behind this study was the evaluation of flow and compaction properties of six different grades of HPMC substitution type 2208 polymers, including two second generation directly compressible grades from Dow Chemical Company (K100LV, K15M, K4M CR, K4M DC, K100M CR and K100M DC). Flow properties were determined using flow time and Carr index. Compaction properties were quantified using "out-of-die" Heckel and modified Walker models as well as tensile strength profile and elastic recovery. We used statistical approach to analyze the results. Due to larger, rounder and smoother particles both DC grades showed distinctly better flow properties compared to their non-DC counterparts. Overall, K15M showed the best compaction properties, closely followed by K100LV. K100M grades showed superior compaction properties over K4M grades. The new, second generation DC grades had poorer compaction properties, however, they exhibited better flow properties on the other hand. Considering all compaction results, the Heckel model gave better description of compressibility compared to the Walker model, so it may be preferred in case of studying HPMC polymers and other similar materials.

Equation-free modeling unravels the behavior of complex ecological systems

USGS Publications Warehouse

DeAngelis, Donald L.; Yurek, Simeon

2015-01-01

Ye et al. (1) address a critical problem confronting the management of natural ecosystems: How can we make forecasts of possible future changes in populations to help guide management actions? This problem is especially acute for marine and anadromous fisheries, where the large interannual fluctuations of populations, arising from complex nonlinear interactions among species and with varying environmental factors, have defied prediction over even short time scales. The empirical dynamic modeling (EDM) described in Ye et al.’s report, the latest in a series of papers by Sugihara and his colleagues, offers a promising quantitative approach to building models using time series to successfully project dynamics into the future. With the term “equation-free” in the article title, Ye et al. (1) are suggesting broader implications of their approach, considering the centrality of equations in modern science. From the 1700s on, nature has been increasingly described by mathematical equations, with differential or difference equations forming the basic framework for describing dynamics. The use of mathematical equations for ecological systems came much later, pioneered by Lotka and Volterra, who showed that population cycles might be described in terms of simple coupled nonlinear differential equations. It took decades for Lotka–Volterra-type models to become established, but the development of appropriate differential equations is now routine in modeling ecological dynamics. There is no question that the injection of mathematical equations, by forcing “clarity and precision into conjecture” (2), has led to increased understanding of population and community dynamics. As in science in general, in ecology equations are a key method of communication and of framing hypotheses. These equations serve as compact representations of an enormous amount of empirical data and can be analyzed by the powerful methods of mathematics.

Temperature evolution during compaction of pharmaceutical powders.

PubMed

Zavaliangos, Antonios; Galen, Steve; Cunningham, John; Winstead, Denita

2008-08-01

A numerical approach to the prediction of temperature evolution in tablet compaction is presented here. It is based on a coupled thermomechanical finite element analysis and a calibrated Drucker-Prager Cap model. This approach is capable of predicting transient temperatures during compaction, which cannot be assessed by experimental techniques due to inherent test limitations. Model predictions are validated with infrared (IR) temperature measurements of the top tablet surface after ejection and match well with experiments. The dependence of temperature fields on speed and degree of compaction are naturally captured. The estimated transient temperatures are maximum at the end of compaction at the center of the tablet and close to the die wall next to the powder/die interface.

Sandstone and shale compaction curves derived from sonic and gamma ray logs in offshore wells, North Slope, Alaska; parameters for basin modeling

USGS Publications Warehouse

Rowan, Elisabeth L.; Hayba, Daniel O.; Nelson, Philip H.; Burns, W. Matthew; Houseknecht, David W.

2003-01-01

Representative compaction curves for the principle lithologies are essential input for reliable models of basin history. Compaction curves influence estimates of maximum burial and erosion. Different compaction curves may produce significantly different thermal histories. Default compaction curves provided by basin modeling packages may or may not be a good proxy for the compaction properties in a given area. Compaction curves in the published literature span a wide range, even within one lithology, e.g., sandstone (see Panel 3). An abundance of geophysical well data for the North Slope, from both government and private sources, provides us with an unusually good opportunity to develop compaction curves for the Cretaceous-Tertiary Brookian sandstones, siltstones, and shales. We examined the sonic and gamma ray logs from 19 offshore wells (see map), where significant erosion is least likely to have occurred. Our data are primarily from the Cretaceous-Tertiary Brookian sequence and are less complete for older sequences. For each well, the fraction of shale (Vsh) at a given depth was estimated from the gamma ray log, and porosity was computed from sonic travel time. By compositing porosities for the near-pure sand (Vsh99%)from many individual wells we obtained data over sufficient depth intervals to define sandstone and shale 'master' compaction curves. A siltstone curve was defined using the sonic-derived porosities for Vsh values of 50%. These compaction curves generally match most of the sonic porosities with an error of 5% or less. Onshore, the curves are used to estimate the depth of maximum burial at the end of Brookian sedimentation. The depth of sonic-derived porosity profiles is adjusted to give the best match with the 'master' compaction curves. The amount of the depth adjustment is the erosion estimate. Using our compaction curves, erosion estimates on the North Slope range from zero in much of the offshore, to as much as 1500 ft along the coast, and to more than 10,000 ft in the foothills (Panel 3). Compaction curves provide an alternative to vitrinite reflectance for estimating erosion. Vitrinite reflectance data are often very sparse in contrast to well log data and are subject to inconsistencies when measurements are made by different labs. The phenomenon of 'recycling' can also make the reflectance values of dispersed vitrinite problematic for quantifying erosion. Recycling is suspected in dispersed vitrinite in North Slope rocks, particularly in the younger, Cretaceous-Tertiary section. The compaction curves defined here are being integrated into our burial history and thermal models to determine the timing of source rock maturation. An example on Panel 3 shows the results of calculating the maturity of the Shublik Fm. at the Tulaga well using two different sets of shale and siltstone compaction curves. Finally, accurate compaction curves improve a model's ability to realistically simulate the pressure regime during burial, including overpressures.

Effect of temperature on compact layer of Pt electrode in PEMFCs by first-principles molecular dynamics calculations

NASA Astrophysics Data System (ADS)

He, Yang; Chen, Changfeng; Yu, Haobo; Lu, Guiwu

2017-01-01

Formation of the double-layer electric field and capacitance of the water-metal interface is of significant interest in physicochemical processes. In this study, we perform first- principles molecular dynamics simulations on the water/Pt(111) interface to investigate the temperature dependence of the compact layer electric field and capacitance based on the calculated charge densities. On the Pt (111) surface, water molecules form ice-like structures that exhibit more disorder along the height direction with increasing temperature. The Osbnd H bonds of more water molecules point toward the Pt surface to form Ptsbnd H covalent bonds with increasing temperature, which weaken the corresponding Osbnd H bonds. In addition, our calculated capacitance at 300 K is 15.2 mF/cm2, which is in good agreement with the experimental results. As the temperature increases from 10 to 450 K, the field strength and capacitance of the compact layer on Pt (111) first increase and then decrease slightly, which is significant for understanding the water/Pt interface from atomic level.

A new compact structure for a high intensity low-energy heavy-ion accelerator

NASA Astrophysics Data System (ADS)

Wang, Zhi-Jun; He, Yuan; A. Kolomiets, A.; Liu, Shu-Hui; Du, Xiao-Nan; Jia, Huan; Li, Chao; Wang, Wang-Sheng; Chen, Xi-Meng

2013-12-01

A new compact accelerating structure named Hybrid RFQ is proposed to accelerate a high-intensity low-energy heavy ion beam in HISCL (High Intensive heavy ion SuperConducting Linear accelerator), which is an injector of HIAF (Heavy Ion Advanced Research Facility). It is combined by an alternative series of acceleration gaps and RFQ sections. The proposed structure has a high accelerating ability compared with a conventional RFQ and is more compact than traditional DTLs. A Hybrid RFQ is designed to accelerate 238U34+ from 0.38 MeV/u to 1.33 MeV/u. The operation frequency is described to be 81.25 MHz at CW (continuous wave) mode. The design beam current is 1.0 mA. The results of beam dynamics and RF simulation of the Hybrid RFQ show that the structure has a good performance at the energy range for ion acceleration. The emittance growth is less than 5% in both directions and the RF power is less than 150 kW. In this paper, the results of beam dynamics and RF simulation of the Hybrid RFQ are presented.

Criticality assessment of LLRWDF closure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sarrack, A.G.; Weber, J.H.; Woody, N.D.

1992-10-06

During the operation of the Low Level Radioactive Waste Disposal Facility (LLRWDF), large amounts (greater than 100 kg) of enriched uranium (EU) were buried. This EU came primarily from the closing and decontamination of the Naval Fuels Facility in the time period from 1987--1989. Waste Management Operations (WMO) procedures were used to keep the EU boxes separated to prevent possible criticality during normal operation. Closure of the LLRWDF is currently being planned, and waste stabilization by Dynamic Compaction (DC) is proposed. Dynamic compaction will crush the containers in the LLRWDF and result in changes in their geometry. Research of themore » LLRWDF operations and record keeping practices have shown that the EU contents of trenches are known, but details of the arrangement of the contents cannot be proven. Reviews of the trench contents, combined with analysis of potential critical configurations, revealed that some portions of the LLRWDF can be expected to be free of criticality concerns while other sections have credible probabilities for the assembly of a critical mass, even in the uncompacted configuration. This will have an impact on the closure options and which trenches can be compacted.« less

Extreme gravity tests with gravitational waves from compact binary coalescences: (I) inspiral-merger

NASA Astrophysics Data System (ADS)

Berti, Emanuele; Yagi, Kent; Yunes, Nicolás

2018-04-01

The observation of the inspiral and merger of compact binaries by the LIGO/Virgo collaboration ushered in a new era in the study of strong-field gravity. We review current and future tests of strong gravity and of the Kerr paradigm with gravitational-wave interferometers, both within a theory-agnostic framework (the parametrized post-Einsteinian formalism) and in the context of specific modified theories of gravity (scalar-tensor, Einstein-dilaton-Gauss-Bonnet, dynamical Chern-Simons, Lorentz-violating, and extra dimensional theories). In this contribution we focus on (i) the information carried by the inspiral radiation, and (ii) recent progress in numerical simulations of compact binary mergers in modified gravity.

Compaction Behavior of Granular Materials

NASA Astrophysics Data System (ADS)

Endicott, Mark R.; Kenkre, V. M.; Glass, S. Jill; Hurd, Alan J.

1996-03-01

We report the results of our recent study of compaction of granular materials. A theoretical model is developed for the description of the compaction of granular materials exemplified by granulated ceramic powders. Its predictions are compared to observations of uniaxial compaction tests of ceramic granules of PMN-PT, spray dried alumina and rutile. The theoretical model employs a volume-based statistical mechanics treatment and an activation analogy. Results of a computer simulation of random packing of discs in two dimensions are also reported. The effect of type of particle size distribution and other parameters of that distribution on the calculated quantities are discussed. We examine the implications of the results of the simulation for the theoretical model.

Equations of state for neutron stars and core-collapse supernovae

NASA Astrophysics Data System (ADS)

Oertel, Micaela; Providência, Constança

2018-04-01

Modelling compact stars is a complex task which depends on many ingredients, among others the properties of dense matter. In this contribution models for the equation of state (EoS) of dense matter will be discussed, relevant for the description of core-collapse supernovae, compact stars and compact star mergers. Such EoS models have to cover large ranges in baryon number density, temperature and isospin asymmetry. The characteristics of matter change dramatically within these ranges, from a mixture of nucleons, nuclei, and electrons to uniform, strongly interacting matter containing nucleons, and possibly other particles such as hyperons or quarks. Some implications for compact star astrophysics will be highlighted, too.

Radiative transfer modelling of W33A MM1: 3-D structure and dynamics of a complex massive star forming region

NASA Astrophysics Data System (ADS)

Izquierdo, Andrés F.; Galván-Madrid, Roberto; Maud, Luke T.; Hoare, Melvin G.; Johnston, Katharine G.; Keto, Eric R.; Zhang, Qizhou; de Wit, Willem-Jan

2018-05-01

We present a composite model and radiative transfer simulations of the massive star forming core W33A MM1. The model was tailored to reproduce the complex features observed with ALMA at ≈0.2 arcsec resolution in CH3CN and dust emission. The MM1 core is fragmented into six compact sources coexisting within ˜1000 au. In our models, three of these compact sources are better represented as disc-envelope systems around a central (proto)star, two as envelopes with a central object, and one as a pure envelope. The model of the most prominent object (Main) contains the most massive (proto)star (M⋆ ≈ 7 M⊙) and disc+envelope (Mgas ≈ 0.4 M⊙), and is the most luminous (LMain ˜ 104 L⊙). The model discs are small (a few hundred au) for all sources. The composite model shows that the elongated spiral-like feature converging to the MM1 core can be convincingly interpreted as a filamentary accretion flow that feeds the rising stellar system. The kinematics of this filament is reproduced by a parabolic trajectory with focus at the center of mass of the region. Radial collapse and fragmentation within this filament, as well as smaller filamentary flows between pairs of sources are proposed to exist. Our modelling supports an interpretation where what was once considered as a single massive star with a ˜103 au disc and envelope, is instead a forming stellar association which appears to be virialized and to form several low-mass stars per high-mass object.

In-situ GPS records of surface mass balance, firn compaction rates, and ice-shelf basal melt rates for Pine Island Glacier, Antarctica

NASA Astrophysics Data System (ADS)

Shean, D. E.; Christianson, K.; Larson, K. M.; Ligtenberg, S.; Joughin, I. R.; Smith, B.; Stevens, C.

2016-12-01

In recent decades, Pine Island Glacier (PIG) has experienced marked retreat, speedup and thinning due to ice-shelf basal melt, internal ice-stream instability and feedbacks between these processes. In an effort to constrain recent ice-stream dynamics and evaluate potential causes of retreat, we analyzed 2008-2010 and 2012-2014 GPS records for PIG. We computed time series of horizontal velocity, strain rate, multipath-based antenna height, surface elevation, and Lagrangian elevation change (Dh/Dt). These data provide validation for complementary high-resolution WorldView stereo digital elevation model (DEM) records, with sampled DEM vertical error of 0.7 m. The GPS antenna height time series document a relative surface elevation increase of 0.7-1.0 m/yr, which is consistent with estimated surface mass balance (SMB) of 0.7-0.9 m.w.e./yr from RACMO2.3 and firn compaction rates from the IMAU-FDM dynamic firn model. An abrupt 0.2-0.3 m surface elevation decrease due to surface melt and/or greater near-surface firn compaction is observed during a period of warm atmospheric temperatures from December 2012 to January 2013. Observed surface Dh/Dt for all PIG shelf sites is highly linear with trends of -1 to -4 m/yr and <0.4 m residuals. Similar Dh/Dt estimates with reduced variability are obtained after removing expected downward GPS pole base velocity from observed GPS antenna Dh/Dt. Estimated Dh/Dt basal melt rates are 10 to 40 m/yr for the outer PIG shelf and 4 m/yr for the South shelf. These melt rates are similar to those derived from ice-bottom acoustic ranging, phase-sensitive ice-penetrating radar, and high-resolution stereo DEM records. The GPS/DEM records document higher melt rates within and near transverse surface depressions and rifts associated with longitudinal extension. Basal melt rates for the 2012-2014 period show limited temporal variability, despite significant change in ocean heat content. This suggests that sub-shelf melt rates are less sensitive to ocean heat content than previously reported, at least for these locations and time periods.

Lightweight Phase-Change Material For Solar Power

NASA Technical Reports Server (NTRS)

Stark, Philip

1993-01-01

Lightweight panels containing phase-change materials developed for use as heat-storage elements of compact, lightweight, advanced solar dynamic power system. During high insolation, heat stored in panels via latent heat of fusion of phase-change material; during low insolation, heat withdrawn from panels. Storage elements consist mainly of porous carbon-fiber structures imbued with germanium. Developed for use aboard space station in orbit around Earth, also adapted to lightweight, compact, portable solar-power systems for use on Earth.

Annealed Importance Sampling for Neural Mass Models

PubMed Central

Penny, Will; Sengupta, Biswa

2016-01-01

Neural Mass Models provide a compact description of the dynamical activity of cell populations in neocortical regions. Moreover, models of regional activity can be connected together into networks, and inferences made about the strength of connections, using M/EEG data and Bayesian inference. To date, however, Bayesian methods have been largely restricted to the Variational Laplace (VL) algorithm which assumes that the posterior distribution is Gaussian and finds model parameters that are only locally optimal. This paper explores the use of Annealed Importance Sampling (AIS) to address these restrictions. We implement AIS using proposals derived from Langevin Monte Carlo (LMC) which uses local gradient and curvature information for efficient exploration of parameter space. In terms of the estimation of Bayes factors, VL and AIS agree about which model is best but report different degrees of belief. Additionally, AIS finds better model parameters and we find evidence of non-Gaussianity in their posterior distribution. PMID:26942606

Temperature effect on mechanical and tribological characterization of Mg-SiC nanocomposite fabricated by high rate compaction

NASA Astrophysics Data System (ADS)

Majzoobi, G. H.; Rahmani, K.; Atrian, A.

2018-01-01

In this paper, dynamic compaction is employed to produce Mg-SiC nanocomposite samples using a mechanical drop hammer. Different volume fractions of SiC nano reinforcement and magnesium (Mg) micron-size powder as the matrix are mechanically milled and consolidated at different temperatures. It is found that with the increase of temperature the sintering requirements is satisfied and higher quality samples are fabricated. The density, hardness, compressive strength and the wear resistance of the compacted specimens are characterized in this work. It was found that by increasing the content of nano reinforcement, the relative density of the compacted samples decreases, whereas, the micro-hardness and the strength of the samples enhance. Furthermore, higher densification temperatures lead to density increase and hardness reduction. Additionally, it is found that the wear rate of the nanocomposite is increased remarkably by increasing the SiC nano reinforcement.

The AB Doradus system revisited: The dynamical mass of AB Dor A/C

NASA Astrophysics Data System (ADS)

Azulay, R.; Guirado, J. C.; Marcaide, J. M.; Martí-Vidal, I.; Ros, E.; Tognelli, E.; Jauncey, D. L.; Lestrade, J.-F.; Reynolds, J. E.

2017-10-01

Context. The study of pre-main-sequence (PMS) stars with model-independent measurements of their masses is essential to check the validity of theoretical models of stellar evolution. The well-known PMS binary AB Dor A/C is an important benchmark for this task, since it displays intense and compact radio emission, which makes possible the application of high-precision astrometric techniques to this system. Aims: We aim to revisit the dynamical masses of the components of AB Dor A/C to refine earlier comparisons between the measurements of stellar parameters and the predictions of stellar models. Methods: We observed in phase-reference mode the binary AB Dor A/C, 0.2'' separation, with the Australian Long Baseline Array at 8.4 GHz. The astrometric information resulting from our observations was analyzed along with previously reported VLBI, optical (Hipparcos), and infrared measurements. Results: The main star AB Dor A is clearly detected in all the VLBI observations, which allowed us to analyze the orbital motion of the system and to obtain model-independent dynamical masses of 0.90 ± 0.08 M⊙ and 0.090 ± 0.008 M⊙, for AB Dor A and AB Dor C, respectively. Comparisons with PMS stellar evolution models favor and age of 40-50 Myr for AB Dor A and of 25-120 Myr for AB Dor C. Conclusions: We show that the orbital motion of the AB Dor A/C system is remarkably well determined, leading to precise estimates of the dynamical masses. Comparison of our results with the prediction of evolutionary models support the observational evidence that theoretical models tend to slightly underestimate the mass of the low-mass stars.

Robust/optimal temperature profile control of a high-speed aerospace vehicle using neural networks.

PubMed

Yadav, Vivek; Padhi, Radhakant; Balakrishnan, S N

2007-07-01

An approximate dynamic programming (ADP)-based suboptimal neurocontroller to obtain desired temperature for a high-speed aerospace vehicle is synthesized in this paper. A 1-D distributed parameter model of a fin is developed from basic thermal physics principles. "Snapshot" solutions of the dynamics are generated with a simple dynamic inversion-based feedback controller. Empirical basis functions are designed using the "proper orthogonal decomposition" (POD) technique and the snapshot solutions. A low-order nonlinear lumped parameter system to characterize the infinite dimensional system is obtained by carrying out a Galerkin projection. An ADP-based neurocontroller with a dual heuristic programming (DHP) formulation is obtained with a single-network-adaptive-critic (SNAC) controller for this approximate nonlinear model. Actual control in the original domain is calculated with the same POD basis functions through a reverse mapping. Further contribution of this paper includes development of an online robust neurocontroller to account for unmodeled dynamics and parametric uncertainties inherent in such a complex dynamic system. A neural network (NN) weight update rule that guarantees boundedness of the weights and relaxes the need for persistence of excitation (PE) condition is presented. Simulation studies show that in a fairly extensive but compact domain, any desired temperature profile can be achieved starting from any initial temperature profile. Therefore, the ADP and NN-based controllers appear to have the potential to become controller synthesis tools for nonlinear distributed parameter systems.

Low-cost laser speckle contrast imaging of blood flow using a webcam.

PubMed

Richards, Lisa M; Kazmi, S M Shams; Davis, Janel L; Olin, Katherine E; Dunn, Andrew K

2013-01-01

Laser speckle contrast imaging has become a widely used tool for dynamic imaging of blood flow, both in animal models and in the clinic. Typically, laser speckle contrast imaging is performed using scientific-grade instrumentation. However, due to recent advances in camera technology, these expensive components may not be necessary to produce accurate images. In this paper, we demonstrate that a consumer-grade webcam can be used to visualize changes in flow, both in a microfluidic flow phantom and in vivo in a mouse model. A two-camera setup was used to simultaneously image with a high performance monochrome CCD camera and the webcam for direct comparison. The webcam was also tested with inexpensive aspheric lenses and a laser pointer for a complete low-cost, compact setup ($90, 5.6 cm length, 25 g). The CCD and webcam showed excellent agreement with the two-camera setup, and the inexpensive setup was used to image dynamic blood flow changes before and after a targeted cerebral occlusion.

Low-cost laser speckle contrast imaging of blood flow using a webcam

PubMed Central

Richards, Lisa M.; Kazmi, S. M. Shams; Davis, Janel L.; Olin, Katherine E.; Dunn, Andrew K.

2013-01-01

Laser speckle contrast imaging has become a widely used tool for dynamic imaging of blood flow, both in animal models and in the clinic. Typically, laser speckle contrast imaging is performed using scientific-grade instrumentation. However, due to recent advances in camera technology, these expensive components may not be necessary to produce accurate images. In this paper, we demonstrate that a consumer-grade webcam can be used to visualize changes in flow, both in a microfluidic flow phantom and in vivo in a mouse model. A two-camera setup was used to simultaneously image with a high performance monochrome CCD camera and the webcam for direct comparison. The webcam was also tested with inexpensive aspheric lenses and a laser pointer for a complete low-cost, compact setup ($90, 5.6 cm length, 25 g). The CCD and webcam showed excellent agreement with the two-camera setup, and the inexpensive setup was used to image dynamic blood flow changes before and after a targeted cerebral occlusion. PMID:24156082

Motion analysis and trials of the deep sea hybrid underwater glider Petrel-II

NASA Astrophysics Data System (ADS)

Liu, Fang; Wang, Yan-hui; Wu, Zhi-liang; Wang, Shu-xin

2017-03-01

A hybrid underwater glider Petrel-II has been developed and field tested. It is equipped with an active buoyancy unit and a compact propeller unit. Its working modes have been expanded to buoyancy driven gliding and propeller driven level-flight, which can make the glider work in strong currents, as well as many other complicated ocean environments. Its maximal gliding speed reaches 1 knot and the propelling speed is up to 3 knots. In this paper, a 3D dynamic model of Petrel-II is derived using linear momentum and angular momentum equations. According to the dynamic model, the spiral motion in the underwater space is simulated for the gliding mode. Similarly the cycle motion on water surface and the depth-keeping motion underwater are simulated for the level-flight mode. These simulations are important to the performance analysis and parameter optimization for the Petrel-II underwater glider. The simulation results show a good agreement with field trials.

Spatio-temporal evolution of perturbations in ensembles initialized by bred, Lyapunov and singular vectors

NASA Astrophysics Data System (ADS)

Pazó, Diego; Rodríguez, Miguel A.; López, Juan M.

2010-05-01

We study the evolution of finite perturbations in the Lorenz ‘96 model, a meteorological toy model of the atmosphere. The initial perturbations are chosen to be aligned along different dynamic vectors: bred, Lyapunov, and singular vectors. Using a particular vector determines not only the amplification rate of the perturbation but also the spatial structure of the perturbation and its stability under the evolution of the flow. The evolution of perturbations is systematically studied by means of the so-called mean-variance of logarithms diagram that provides in a very compact way the basic information to analyse the spatial structure. We discuss the corresponding advantages of using those different vectors for preparing initial perturbations to be used in ensemble prediction systems, focusing on key properties: dynamic adaptation to the flow, robustness, equivalence between members of the ensemble, etc. Among all the vectors considered here, the so-called characteristic Lyapunov vectors are possibly optimal, in the sense that they are both perfectly adapted to the flow and extremely robust.

Spatio-temporal evolution of perturbations in ensembles initialized by bred, Lyapunov and singular vectors

NASA Astrophysics Data System (ADS)

Pazó, Diego; Rodríguez, Miguel A.; López, Juan M.

2010-01-01

We study the evolution of finite perturbations in the Lorenz `96 model, a meteorological toy model of the atmosphere. The initial perturbations are chosen to be aligned along different dynamic vectors: bred, Lyapunov, and singular vectors. Using a particular vector determines not only the amplification rate of the perturbation but also the spatial structure of the perturbation and its stability under the evolution of the flow. The evolution of perturbations is systematically studied by means of the so-called mean-variance of logarithms diagram that provides in a very compact way the basic information to analyse the spatial structure. We discuss the corresponding advantages of using those different vectors for preparing initial perturbations to be used in ensemble prediction systems, focusing on key properties: dynamic adaptation to the flow, robustness, equivalence between members of the ensemble, etc. Among all the vectors considered here, the so-called characteristic Lyapunov vectors are possibly optimal, in the sense that they are both perfectly adapted to the flow and extremely robust.

Collective chemotaxis and segregation of active bacterial colonies

NASA Astrophysics Data System (ADS)

Amar, M. Ben

2016-02-01

Still recently, bacterial fluid suspensions have motivated a lot of works, both experimental and theoretical, with the objective to understand their collective dynamics from universal and simple rules. Since some species are active, most of these works concern the strong interactions that these bacteria exert on a forced flow leading to instabilities, chaos and turbulence. Here, we investigate the self-organization of expanding bacterial colonies under chemotaxis, proliferation and eventually active-reaction. We propose a simple model to understand and quantify the physical properties of these living organisms which either give cohesion or on the contrary dispersion to the colony. Taking into account the diffusion and capture of morphogens complicates the model since it induces a bacterial density gradient coupled to bacterial density fluctuations and dynamics. Nevertheless under some specific conditions, it is possible to investigate the pattern formation as a usual viscous fingering instability. This explains the similarity and differences of patterns according to the physical bacterial suspension properties and explain the factors which favor compactness or branching.

Force-Balance Dynamic Display

NASA Technical Reports Server (NTRS)

Ferris, Alice T.; White, William C.

1988-01-01

Balance dynamic display unit (BDDU) is compact system conditioning six dynamic analog signals so they are monitored simultaneously in real time on single-trace oscilloscope. Typical BDDU oscilloscope display in scan mode shows each channel occupying one-sixth of total trace. System features two display modes usable with conventional, single-channel oscilloscope: multiplexed six-channel "bar-graph" format and single-channel display. Two-stage visual and audible limit alarm provided for each channel.

Characterizing and modeling organic binder burnout from green ceramic compacts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ewsuk, K.G.; Cesarano, J. III; Cochran, R.J.

New characterization and computational techniques have been developed to evaluate and simulate binder burnout from pressed powder compacts. Using engineering data and a control volume finite element method (CVFEM) thermal model, a nominally one dimensional (1-D) furnace has been designed to test, refine, and validate computer models that simulate binder burnout assuming a 1-D thermal gradient across the ceramic body during heating. Experimentally, 1-D radial heat flow was achieved using a rod-shaped heater that directly heats the inside surface of a stack of ceramic annuli surrounded by thermal insulation. The computational modeling effort focused on producing a macroscopic model formore » binder burnout based on continuum approaches to heat and mass conservation for porous media. Two increasingly complex models have been developed that predict the temperature and mass of a porous powder compact as a function of time during binder burnout. The more complex model also predicts the pressure within a powder compact during binder burnout. Model predictions are in reasonably good agreement with experimental data on binder burnout from a 57--65% relative density pressed powder compact of a 94 wt% alumina body containing {approximately}3 wt% binder. In conjunction with the detailed experimental data from the prototype binder burnout furnace, the models have also proven useful for conducting parametric studies to elucidate critical i-material property data required to support model development.« less

On the quasi-steady aerodynamics of normal hovering flight part II: model implementation and evaluation

PubMed Central

Nabawy, Mostafa R. A.; Crowther, William J.

2014-01-01

This paper introduces a generic, transparent and compact model for the evaluation of the aerodynamic performance of insect-like flapping wings in hovering flight. The model is generic in that it can be applied to wings of arbitrary morphology and kinematics without the use of experimental data, is transparent in that the aerodynamic components of the model are linked directly to morphology and kinematics via physical relationships and is compact in the sense that it can be efficiently evaluated for use within a design optimization environment. An important aspect of the model is the method by which translational force coefficients for the aerodynamic model are obtained from first principles; however important insights are also provided for the morphological and kinematic treatments that improve the clarity and efficiency of the overall model. A thorough analysis of the leading-edge suction analogy model is provided and comparison of the aerodynamic model with results from application of the leading-edge suction analogy shows good agreement. The full model is evaluated against experimental data for revolving wings and good agreement is obtained for lift and drag up to 90° incidence. Comparison of the model output with data from computational fluid dynamics studies on a range of different insect species also shows good agreement with predicted weight support ratio and specific power. The validated model is used to evaluate the relative impact of different contributors to the induced power factor for the hoverfly and fruitfly. It is shown that the assumption of an ideal induced power factor (k = 1) for a normal hovering hoverfly leads to a 23% overestimation of the generated force owing to flapping. PMID:24554578

On the quasi-steady aerodynamics of normal hovering flight part II: model implementation and evaluation.

PubMed

Nabawy, Mostafa R A; Crowther, William J

2014-05-06

This paper introduces a generic, transparent and compact model for the evaluation of the aerodynamic performance of insect-like flapping wings in hovering flight. The model is generic in that it can be applied to wings of arbitrary morphology and kinematics without the use of experimental data, is transparent in that the aerodynamic components of the model are linked directly to morphology and kinematics via physical relationships and is compact in the sense that it can be efficiently evaluated for use within a design optimization environment. An important aspect of the model is the method by which translational force coefficients for the aerodynamic model are obtained from first principles; however important insights are also provided for the morphological and kinematic treatments that improve the clarity and efficiency of the overall model. A thorough analysis of the leading-edge suction analogy model is provided and comparison of the aerodynamic model with results from application of the leading-edge suction analogy shows good agreement. The full model is evaluated against experimental data for revolving wings and good agreement is obtained for lift and drag up to 90° incidence. Comparison of the model output with data from computational fluid dynamics studies on a range of different insect species also shows good agreement with predicted weight support ratio and specific power. The validated model is used to evaluate the relative impact of different contributors to the induced power factor for the hoverfly and fruitfly. It is shown that the assumption of an ideal induced power factor (k = 1) for a normal hovering hoverfly leads to a 23% overestimation of the generated force owing to flapping.

Original predictive approach to the compressibility of pharmaceutical powder mixtures based on the Kawakita equation.

PubMed

Mazel, Vincent; Busignies, Virginie; Duca, Stéphane; Leclerc, Bernard; Tchoreloff, Pierre

2011-05-30

In the pharmaceutical industry, tablets are obtained by the compaction of two or more components which have different physical properties and compaction behaviours. Therefore, it could be interesting to predict the physical properties of the mixture using the single-component results. In this paper, we have focused on the prediction of the compressibility of binary mixtures using the Kawakita model. Microcrystalline cellulose (MCC) and L-alanine were compacted alone and mixed at different weight fractions. The volume reduction, as a function of the compaction pressure, was acquired during the compaction process ("in-die") and after elastic recovery ("out-of-die"). For the pure components, the Kawakita model is well suited to the description of the volume reduction. For binary mixtures, an original approach for the prediction of the volume reduction without using the effective Kawakita parameters was proposed and tested. The good agreement between experimental and predicted data proved that this model was efficient to predict the volume reduction of MCC and L-alanine mixtures during compaction experiments. Copyright © 2011 Elsevier B.V. All rights reserved.

Effect of ball milling and dynamic compaction on magnetic properties of Al2O3/Co(P) composite particles

NASA Astrophysics Data System (ADS)

Denisova, E. A.; Kuzovnikova, L. A.; Iskhakov, R. S.; Bukaemskiy, A. A.; Eremin, E. V.; Nemtsev, I. V.

2014-05-01

The evolution of the magnetic properties of composite Al2O3/Co(P) particles during ball milling and dynamic compaction is investigated. To prepare starting composite particles, the Al2O3 granules were coated with a Co95P5 shell by electroless plating. The magnetic and structural properties of the composite particles are characterized by scanning electron microscopy, X-ray diffraction, and the use of the Physical Property Measurement System. The use of composite core-shell particles as starting powder for mechanoactivation allows to decrease treatment duration to 1 h and to produce a more homogeneous bulk sample than in the case of the mixture of Co and Al2O3 powders. The magnetic properties of the milled composite particles are correlated with changes in the microstructure. Reduction in grain size of Co during milling leads to an increase of the volume fraction of superparamagnetic particles and to a decrease of the saturation magnetization. The local magnetic anisotropy field depends on the amount of hcp-Co phase in sample. The anisotropy field value decreases from 8.4 kOe to 3.8 kOe with an increase in milling duration up to 75 min. The regimes of dynamic compaction were selected so that the magnetic characteristics—saturation magnetization and coercive field—remained unchanged.

Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding.

PubMed

Tomić, A; Berynskyy, M; Wade, R C; Tomić, S

2015-11-01

The experimentally determined structures of human dipeptidyl peptidase III (DPP III) for the wild-type protein and for the complex of its E451A mutant with the peptide substrate, tynorphin, differ significantly in their overall shape. The two domains of the enzyme are separated by a wide cleft in the structure of the ligand-free enzyme, while in the ligand-bound mutant they are very close to each other, and the protein structure is extremely compact. Here, we applied a range of molecular dynamics simulation techniques to investigate the DPP III conformational landscape and the influence of ligand binding on the protein structure and dynamics. We used conventional, accelerated and steered methods to simulate DPP III and its complexes with tynorphin and with the preferred, synthetic, substrate Arg-Arg-2-naphthylamide. We found that DPP III can adopt a number of different forms in solution. The compact forms are more stable, but the open and partially closed states, spanning a wide range of conformations, can more effectively recognize the substrate which preferentially binds to the five-stranded β-core of the lower DPP III domain. The simulations indicated the existence of a dynamic equilibrium between open and semi-closed states and revealed two ways that the protein can close, leading to two distinct compact structures. The way in which the protein closes depends on the presence of the ligand.

10 CFR 429.35 - Bare or covered (no reflector) medium base compact fluorescent lamps.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 10 Energy 3 2012-01-01 2012-01-01 false Bare or covered (no reflector) medium base compact....35 Bare or covered (no reflector) medium base compact fluorescent lamps. (a) Sampling plan for... reflector) medium base compact fluorescent lamps; and (2) For each basic model of bare or covered (no...

10 CFR 429.35 - Bare or covered (no reflector) medium base compact fluorescent lamps.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 10 Energy 3 2014-01-01 2014-01-01 false Bare or covered (no reflector) medium base compact....35 Bare or covered (no reflector) medium base compact fluorescent lamps. (a) Sampling plan for... reflector) medium base compact fluorescent lamps; and (2) For each basic model of bare or covered (no...

10 CFR 429.35 - Bare or covered (no reflector) medium base compact fluorescent lamps.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 10 Energy 3 2013-01-01 2013-01-01 false Bare or covered (no reflector) medium base compact....35 Bare or covered (no reflector) medium base compact fluorescent lamps. (a) Sampling plan for... reflector) medium base compact fluorescent lamps; and (2) For each basic model of bare or covered (no...

25 CFR 1000.162 - What is included in a self-governance compact?

Code of Federal Regulations, 2010 CFR

2010-04-01

... 25 Indians 2 2010-04-01 2010-04-01 false What is included in a self-governance compact? 1000.162...-DETERMINATION AND EDUCATION ACT Negotiation Process for Annual Funding Agreements Negotiating A Self-Governance Compact § 1000.162 What is included in a self-governance compact? A model format for self-governance...

Study of isotropic compact stars in f(R,T,R_{μν}T^{μν}) gravity

NASA Astrophysics Data System (ADS)

Sharif, M.; Waseem, Arfa

2016-06-01

In this paper, we investigate physical behavior and stability of compact stars filled with isotropic fluid in f(R,T,R_{μν}T^{μν}) gravity. We consider the static spherically symmetric spacetime and choose the simplest model of this gravity, i.e., R+α R_{μν}T^{μν} . To examine the basic features of compact stars like Her X-1, SAX J 1808.4-3658 and 4U 1820-30, we apply analytic solutions of Krori and Barua metric using the mass-radius relation. We study the behavior of effective energy density, pressure, equation of state parameter and energy conditions in the interior of compact stars. We also explore the stability criteria of compact stars via the speed of sound. It is concluded that all the energy conditions are satisfied and the compact stars are found to be stable at the boundary for this particular model.

Optimization of the computational load of a hypercube supercomputer onboard a mobile robot.

PubMed

Barhen, J; Toomarian, N; Protopopescu, V

1987-12-01

A combinatorial optimization methodology is developed, which enables the efficient use of hypercube multiprocessors onboard mobile intelligent robots dedicated to time-critical missions. The methodology is implemented in terms of large-scale concurrent algorithms based either on fast simulated annealing, or on nonlinear asynchronous neural networks. In particular, analytic expressions are given for the effect of singleneuron perturbations on the systems' configuration energy. Compact neuromorphic data structures are used to model effects such as prec xdence constraints, processor idling times, and task-schedule overlaps. Results for a typical robot-dynamics benchmark are presented.

Optimization of the computational load of a hypercube supercomputer onboard a mobile robot

NASA Technical Reports Server (NTRS)

Barhen, Jacob; Toomarian, N.; Protopopescu, V.

1987-01-01

A combinatorial optimization methodology is developed, which enables the efficient use of hypercube multiprocessors onboard mobile intelligent robots dedicated to time-critical missions. The methodology is implemented in terms of large-scale concurrent algorithms based either on fast simulated annealing, or on nonlinear asynchronous neural networks. In particular, analytic expressions are given for the effect of single-neuron perturbations on the systems' configuration energy. Compact neuromorphic data structures are used to model effects such as precedence constraints, processor idling times, and task-schedule overlaps. Results for a typical robot-dynamics benchmark are presented.

A Hybrid Cellular Automaton Model of Clonal Evolution in Cancer: The Emergence of the Glycolytic Phenotype

PubMed Central

Gerlee, P.; Anderson, A.R.A.

2009-01-01

We present a cellular automaton model of clonal evolution in cancer aimed at investigating the emergence of the glycolytic phenotype. In the model each cell is equipped with a micro-environment response network that determines the behaviour or phenotype of the cell based on the local environment. The response network is modelled using a feed-forward neural network, which is subject to mutations when the cells divide. This implies that cells might react differently to the environment and when space and nutrients are limited only the fittest cells will survive. With this model we have investigated the impact of the environment on the growth dynamics of the tumour. In particular we have analysed the influence of the tissue oxygen concentration and extra-cellular matrix density on the dynamics of the model. We found that the environment influences both the growth and evolutionary dynamics of the tumour. For low oxygen concentration we observe tumours with a fingered morphology, while increasing the matrix density gives rise to more compact tumours with wider fingers. The distribution of phenotypes in the tumour is also affected, and we observe that the glycolytic phenotype is most likely to emerge in a poorly oxygenated tissue with a high matrix density. Our results suggest that it is the combined effect of the oxygen concentration and matrix density that creates an environment where the glycolytic phenotype has a growth advantage and consequently is most likely to appear. PMID:18068192

What drives the evolution of Luminous Compact Blue Galaxies in Clusters vs. the Field?

NASA Astrophysics Data System (ADS)

Wirth, Gregory D.; Bershady, Matthew A.; Crawford, Steven M.; Hunt, Lucas; Pisano, Daniel J.; Randriamampandry, Solohery M.

2018-06-01

Low-mass dwarf ellipticals are the most numerous members of present-day galaxy clusters, but the progenitors of this dominant population remain unclear. A prime candidate is the class of objects known as Luminous Compact Blue Galaxies (LCBGs), common in intermediate-redshift clusters but virtually extinct today. Recent cosmological simulations suggest that present-day dwarf galaxies begin as irregular field galaxies, undergo an environmentally-driven starburst phase as they enter the cluster, and stop forming stars earlier than their counterparts in the field. This model predicts that cluster dwarfs should have lower stellar mass per unit dynamical mass than their counterparts in the field. We are undertaking a two-pronged archival research program to test this key prediction using the combination of precision photometry from space and high-quality spectroscopy. First, we are combining optical HST/ACS imaging of five z=0.55 clusters (including two HST Frontier Fields) with Spitzer IR imaging and publicly-released Keck/DEIMOS spectroscopy to measure stellar-to-dynamical-mass ratios for a large sample of cluster LCBGs. Second, we are exploiting a new catalog of LCBGs in the COSMOS field to gather corresponding data for a significant sample of field LCBGs. By comparing mass ratios from these datasets, we aim to test theoretical predictions and determine the primary physical driver of cluster dwarf-galaxy evolution.

Aquifer-System Compaction and Land Subsidence: Measurements, Analyses, and Simulations-the Holly Site, Edwards Air Force Base, Antelope Valley, California

USGS Publications Warehouse

Sneed, Michelle; Galloway, Devin L.

2000-01-01

Land subsidence resulting from ground-water-level declines has long been recognized as a problem in Antelope Valley, California. At Edwards Air Force Base (EAFB), ground-water extractions have caused more than 150 feet of water-level decline, resulting in nearly 4 feet of subsidence. Differential land subsidence has caused sinklike depressions and earth fissures and has accelerated erosion of the playa lakebed surface of Rogers Lake at EAFB, adversely affecting the runways on the lakebed which are used for landing aircraft such as the space shuttles. Since 1990, about 0.4 foot of aquifer-system compaction has been measured at a deep (840 feet) borehole extensometer (Holly site) at EAFB. More than 7 years of paired ground-water-level and aquifer-system compaction measurements made at the Holly site were analyzed for this study. Annually, seasonal water-level fluctuations correspond to steplike variations in aquifer-system compaction; summer water-level drawdowns are associated with larger rates of compaction, and winter water-level recoveries are associated with smaller rates of compaction. The absence of aquifer-system expansion during recovery is consistent with the delayed drainage and resultant delayed, or residual, compaction of thick aquitards. A numerical one-dimensional MODFLOW model of aquitard drainage was used to refine estimates of aquifer-system hydraulic parameters that control compaction and to predict potential future compaction at the Holly site. The analyses and simulations of aquifer-system compaction are based on established theories of aquitard drainage. Historical ground-water-level and land-subsidence data collected near the Holly site were used to constrain simulations of aquifer-system compaction and land subsidence at the site for the period 1908?90, and ground-water-level and aquifer- system compaction measurements collected at the Holly site were used to constrain the model for the period 1990?97. Model results indicate that two thick aqui- tards, which total 129 feet or about half the aggregate thickness of all the aquitards penetrated by the Holly boreholes, account for most (greater than 99 percent) of the compaction measured at the Holly site during the period 1990?97. The results of three scenarios of future water-level changes indicate that these two thick aquitards account for most of the future compaction. The results also indicate that if water levels decline to about 30 feet below the 1997 water levels an additional 1.7 feet of compaction may occur during the next 30 years. If water levels remain at 1997 levels, the model predicts that only 0.8 foot of compaction may occur during the same period, and even if water levels recover to about 30 feet above 1997 water levels, another 0.5 foot of compaction may occur in the next 30 years. In addition, only a portion of the compaction that ultimately will occur likely will occur within the next 30 years; therefore, the residual compaction and associated land subsidence attributed to slowly equilibrating aquitards is important to consider in the long-term management of land and water resources at EAFB.

Importance of the predator's ecological neighborhood in modeling predation on migrating prey

USGS Publications Warehouse

DeAngelis, Donald L.; Petersen, James H.

2001-01-01

Most mathematical descriptions of predator-prey interactions fail to take into account the spatio-temporal structures of the populations, which can lead to errors or misinterpretations. For example, a compact pulse of prey migrating through a field of quasi-stationary predators may not be well described by standard predator-prey models, because the predators and prey are unlikely to be well mixed; that is, the prey may be exposed to only a fraction of the predator population at a time. This underscores the importance of properly accounting for the ecological neighborhood, or effective feeding range, of predators in models. We illustrate this situation with a series of models of salmon smolts migrating through a reservoir arrayed with predators. The reservoir is divided into a number of longitudinal compartments or spatial cells, the length of each cell representing the upstream-downstream range over which predators can forage. In this series of models a 100-km-long reservoir is divided, successively into 2, 5, 10, 25, 50, 100, 200, and 400 cells, with respective cell lengths of 50, 20, 10, 4, 2, 1, 0.5, and 0.25 km. We used a detailed individual-based simulation model at first, but to ensure robustness of results we supplemented this with a simple analytic model. Both models showed sharp differences in the predicted mortality to a compact pulse of smolt prey moving through the reservoir, depending on the number of spatial cells in the model. In particular, models with fewer than about 10 cells vastly overpredicted the amount of mortality due to predators with activity ranges of not more than a few kilometers. These results corroborate recent theoretical and simulation studies on the importance of spatial scale and behavior in modeling predator-prey dynamics.

Effective High-Frequency Permeability of Compacted Metal Powders

NASA Astrophysics Data System (ADS)

Volkovskaya, I. I.; Semenov, V. E.; Rybakov, K. I.

2018-03-01

We propose a model for determination of the effective complex permeability of compacted metal-powder media. It is based on the equality of the magnetic moment in a given volume of the media with the desired effective permeability to the total magnetic moment of metal particles in the external high-frequency magnetic field, which arises due to excitation of electric eddy currents in the particles. Calculations within the framework of the proposed model allow us to refine the values of the real and imaginary components of the permeability of metal powder compacts in the microwave band. The conditions of applicability of the proposed model are formulated, and their fulfillment is verified for metal powder compacts in the microwave and millimeter wavelength bands.

Structure and dynamics of zymogen human blood coagulation factor X.

PubMed

Venkateswarlu, Divi; Perera, Lalith; Darden, Tom; Pedersen, Lee G

2002-03-01

The solution structure and dynamics of the human coagulation factor X (FX) have been investigated to understand the key structural elements in the zymogenic form that participates in the activation process. The model was constructed based on the 2.3-A-resolution x-ray crystallographic structure of active-site inhibited human FXa (PDB:1XKA). The missing gamma-carboxyglutamic acid (GLA) and part of epidermal growth factor 1 (EGF1) domains of the light chain were modeled based on the template of GLA-EGF1 domains of the tissue factor (TF)-bound FVIIa structure (PDB:1DAN). The activation peptide and other missing segments of FX were introduced using homology modeling. The full calcium-bound model of FX was subjected to 6.2 ns of molecular dynamics simulation in aqueous medium using the AMBER6.0 package. We observed significant reorientation of the serine-protease (SP) domain upon activation leading to a compact multi-domain structure. The solution structure of zymogen appears to be in a well-extended conformation with the distance between the calcium ions in the GLA domain and the catalytic residues estimated to be approximately 95 A in contrast to approximately 83 A in the activated form. The latter is in close agreement with fluorescence studies on FXa. The S1-specificity residues near the catalytic triad show significant differences between the zymogen and activated structures.

Non-arrhenius behavior in the unfolding of a short, hydrophobic alpha-helix. Complementarity of molecular dynamics and lattice model simulations.

PubMed

Collet, Olivier; Chipot, Christophe

2003-05-28

The unfolding of the last, C-terminal residue of AcNH(2)-(l-Leu)(11)-NHMe in its alpha-helical form has been investigated by measuring the variation of free energy involved in the alpha(R) to beta conformational transition. These calculations were performed using large-scale molecular dynamics simulations in conjunction with the umbrella sampling method. For different temperatures ranging from 280 to 370 K, the free energy of activation was estimated. Concurrently, unfolding simulations of a homopolypeptide formed by twelve hydrophobic residues were carried out, employing a three-dimensional lattice model description of the peptide, with a temperature-dependent interaction potential. Using a Monte Carlo approach, the lowest free energy conformation, an analogue of a right-handed alpha-helix, was determined in the region where the peptide chain is well ordered. The free energy barrier separating this state from a distinct, compact conformation, analogue to a beta-strand, was determined over a large enough range of temperatures. The results of these molecular dynamics and lattice model simulations are consistent and indicate that the kinetics of the unfolding of a hydrophobic peptide exhibits a non-Arrhenius behavior closely related to the temperature dependence of the hydrophobic effect. These results further illuminate the necessity to include a temperature dependence in potential energy functions designed for coarse-grained models of proteins.

Understanding and optimizing the dual excipient functionality of sodium lauryl sulfate in tablet formulation of poorly water soluble drug: wetting and lubrication.

PubMed

Aljaberi, Ahmad; Chatterji, Ashish; Dong, Zedong; Shah, Navnit H; Malick, Waseem; Singhal, Dharmendra; Sandhu, Harpreet K

2013-01-01

To evaluate and optimize sodium lauryl sulfate (SLS) and magnesium stearate (Mg.St) levels, with respect to dissolution and compaction, in a high dose, poorly soluble drug tablet formulation. A model poorly soluble drug was formulated using high shear aqueous granulation. A D-optimal design was used to evaluate and model the effect of granulation conditions, size of milling screen, SLS and Mg.St levels on tablet compaction and ejection. The compaction profiles were generated using a Presster(©) compaction simulator. Dissolution of the kernels was performed using a USP dissolution apparatus II and intrinsic dissolution was determined using a stationary disk system. Unlike kernels dissolution which failed to discriminate between tablets prepared with various SLS contents, the intrinsic dissolution rate showed that a SLS level of 0.57% was sufficient to achieve the required release profile while having minimal effect on compaction. The formulation factors that affect tablet compaction and ejection were identified and satisfactorily modeled. The design space of best factor setting to achieve optimal compaction and ejection properties was successfully constructed by RSM analysis. A systematic study design helped identify the critical factors and provided means to optimize the functionality of key excipient to design robust drug product.

Comparison of silver release predictions using PARFUME with results from the AGR-2 irradiation experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Collin, Blaise P.; Demkowicz, Paul A.; Baldwin, Charles A.

2016-11-01

The PARFUME (PARticle FUel ModEl) code was used to predict silver release from tristructural isotropic (TRISO) coated fuel particles and compacts during the second irradiation experiment (AGR-2) of the Advanced Gas Reactor Fuel Development and Qualification program. The PARFUME model for the AGR-2 experiment used the fuel compact volume average temperature for each of the 559 days of irradiation to calculate the release of fission product silver from a representative particle for a select number of AGR-2 compacts and individual fuel particles containing either mixed uranium carbide/oxide (UCO) or 100% uranium dioxide (UO2) kernels. Post-irradiation examination (PIE) measurements were performedmore » to provide data on release of silver from these compacts and individual fuel particles. The available experimental fractional releases of silver were compared to their corresponding PARFUME predictions. Preliminary comparisons show that PARFUME under-predicts the PIE results in UCO compacts and is in reasonable agreement with experimental data for UO2 compacts. The accuracy of PARFUME predictions is impacted by the code limitations in the modeling of the temporal and spatial distributions of the temperature across the compacts. Nevertheless, the comparisons on silver release lie within the same order of magnitude.« less

Role of pressure anisotropy on relativistic compact stars

NASA Astrophysics Data System (ADS)

Maurya, S. K.; Banerjee, Ayan; Hansraj, Sudan

2018-02-01

We investigate a compact spherically symmetric relativistic body with anisotropic particle pressure profiles. The distribution possesses characteristics relevant to modeling compact stars within the framework of general relativity. For this purpose, we consider a spatial metric potential of Korkina and Orlyanskii [Ukr. Phys. J. 36, 885 (1991)] type in order to solve the Einstein field equations. An additional prescription we make is that the pressure anisotropy parameter takes the functional form proposed by Lake [Phys. Rev. D 67, 104015 (2003), 10.1103/PhysRevD.67.104015]. Specifying these two geometric quantities allows for further analysis to be carried out in determining unknown constants and obtaining a limit of the mass-radius diagram, which adequately describes compact strange star candidates like Her X-1 and SMC X-1. Using the anisotropic Tolman-Oppenheimer-Volkoff equations, we explore the hydrostatic equilibrium and the stability of such compact objects. Then, we investigate other physical features of this model, such as the energy conditions, speeds of sound, and compactness of the star, in detail and show that our results satisfy all the required elementary conditions for a physically acceptable stellar model. The results obtained are useful in analyzing the stability of other anisotropic compact objects like white dwarfs, neutron stars, and gravastars.

Changes in Chromatin Compaction During the Cell Cycle Revealed by Micrometer-Scale Measurement of Molecular Flow in the Nucleus

PubMed Central

Hinde, Elizabeth; Cardarelli, Francesco; Digman, Michelle A.; Gratton, Enrico

2012-01-01

We present a quantitative fluctuation-based assay to measure the degree of local chromatin compaction and investigate how chromatin density regulates the diffusive path adopted by an inert protein in dividing cells. The assay uses CHO-K1 cells coexpressing untagged enhanced green fluorescent protein (EGFP) and histone H2B tagged mCherry. We measure at the single-cell level the EGFP localization and molecular flow patterns characteristic of each stage of chromatin compaction from mitosis through interphase by means of pair-correlation analysis. We find that the naturally occurring changes in chromatin organization impart a regulation on the spatial distribution and temporal dynamics of EGFP within the nucleus. Combined with the analysis of Ca2+ intracellular homeostasis during cell division, EGFP flow regulation can be interpreted as the result of controlled changes in chromatin compaction. For the first time, to our knowledge, we were able to probe chromatin compaction on the micrometer scale, where the regulation of molecular diffusion may become relevant for many cellular processes. PMID:22325293

Mesoscale simulations of shock compaction of a granular ceramic: effects of mesostructure and mixed-cell strength treatment

NASA Astrophysics Data System (ADS)

Derrick, J. G.; LaJeunesse, J. W.; Davison, T. M.; Borg, J. P.; Collins, G. S.

2018-04-01

The shock response of granular materials is important in a variety of contexts but the precise dynamics of grains during compaction is poorly understood. Here we use 2D mesoscale numerical simulations of the shock compaction of granular tungsten carbide to investigate the effect of internal structure within the particle bed and ‘stiction’ between grains on the shock response. An increase in the average number of contacts with other particles, per particle, tends to shift the Hugoniot to higher shock velocities, lower particle velocities and lower densities. This shift is sensitive to inter-particle shear resistance. Eulerian shock physics codes approximate friction between, and interlocking of, grains with their treatment of mixed cell strength (stiction) and here we show that this has a significant effect on the shock response. When studying the compaction of particle beds it is not common to quantify the pre-compaction internal structure, yet our results suggest that such differences should be taken into account, either by using identical beds or by averaging results over multiple experiments.

Probing Dynamics in Granular Media of Contrasting Geometries via X-Ray Phase Contrast Imaging and PDV

NASA Astrophysics Data System (ADS)

Crum, Ryan; Pagan, Darren; Lind, Jon; Homel, Michael; Hurley, Ryan; Herbold, Eric; Akin, Minta

Granular systems are ubiquitous in our everyday world and play a central role in many dynamic scientific problems including mine blasting, projectile penetration, astrophysical collisions, explosions, and dynamic compaction. An understanding of granular media's behavior under various loading conditions is an ongoing scientific grand challenge. This is partly due to the intricate interplay between material properties, loading conditions, grain geometry, and grain connectivity. Previous dynamic studies in granular media predominantly utilize the macro-scale analyses VISAR or PDV, diagnostics that are not sensitive to the many degrees of freedom and their interactions, focusing instead on their aggregate effect. Results of a macro-scale analysis leave the principal interactions of these degrees of freedom too entangled to elucidate. To isolate the significance of grain geometry, this study probes various geometries of granular media subjected to gas gun generated waves via in-situ X-ray analysis. Analyses include evaluating displacement fields, grain fracture, inter- and intra-granular densification, and wave front motion. Phase Contrast Imaging (PCI) and PDV analyses feed directly into our concurrent meso-scale granular media modeling efforts to enhance our predictive capabilities.

Dynamics of streaming instability with quantum correction

NASA Astrophysics Data System (ADS)

Goutam, H. P.; Karmakar, P. K.

2017-05-01

A modified quantum hydrodynamic model (m-QHD) is herein proposed on the basis of the Thomas-Fermi (TF) theory of many fermionic quantum systems to investigate the dynamics of electrostatic streaming instability modes in a complex (dusty) quantum plasma system. The newly formulated m-QHD, as an amelioration over the existing usual QHD, employs a dimensionality-dependent Bohmian quantum correction prefactor, γ = [(D-2)/3D], in the electron quantum dynamics, where D symbolizing the problem dimensionality under consideration. The normal mode analysis of the coupled structure equations reveals the excitation of two distinct streaming modes associated with the flowing ions (against electrons and dust) and the flowing dust particulates (against the electrons and ions). It is mainly shown that the γ-factor introduces a new source of stability and dispersive effects to the ion-streaming instability solely; but not to the dust counterparts. A non-trivial application of our investigation in electrostatic beam-plasma (flow-driven) coupled dynamics leading to the development of self-sustained intense electric current, and hence, of strong magnetic field in compact astrophysical objects (in dwarf-family stars) is summarily indicated.

Casimir force in Randall-Sundrum models with q+1 dimensions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frank, Mariana; Turan, Ismail; Saad, Nasser

2008-09-01

We evaluate the Casimir force between two parallel plates in Randall-Sundrum (RS) scenarios extended by q compact dimensions. After giving exact expressions for one extra compact dimension (6D RS model), we generalize to an arbitrary number of compact dimensions. We present the complete calculation for both the two-brane scenario (RSI model) and the one-brane scenario (RSII model) using the method of summing over the modes. We investigate the effects of extra dimensions on the magnitude and sign of the force, and comment on limits for the size and number of the extra dimensions.

Inelastic compaction, dilation and hysteresis of sandstones under hydrostatic conditions

NASA Astrophysics Data System (ADS)

Shalev, Eyal; Lyakhovsky, Vladimir; Ougier-Simonin, Audrey; Hamiel, Yariv; Zhu, Wenlu

2014-05-01

Sandstones display non-linear and inelastic behaviour such as hysteresis when subjected to cyclic loading. We present three hydrostatic compaction experiments with multiple loading-unloading cycles on Berea and Darley Dale sandstones and explain their hysteretic behaviour using non-linear inelastic compaction and dilation. Each experiment included eight to nine loading-unloading cycles with increasing maximum pressure in each subsequent cycle. Different pressure-volumetric strain relations during loading and unloading were observed. During the first cycles, under relatively low pressures, not all of the volumetric strain is recovered at the end of each cycle whereas at the last cycles, under relatively high pressures, the strain is recovered and the pressure-volumetric strain hysteresis loops are closed. The observed pressure-volumetric strain relations are non-linear and the effective bulk modulus of the sandstones changes between cycles. Observations are modelled with two inelastic deformation processes: irreversible compaction caused by changes in grain packing and recoverable compaction associated with grain contact adhesion, frictional sliding on grains or frictional sliding on cracks. The irreversible compaction is suggested to reflect rearrangement of grains into a more compact mode as the maximum pressure increases. Our model describes the `inelastic compaction envelope' in which sandstone sample will follow during hydrostatic loading. Irreversible compaction occurs when pressure is greater than a threshold value defined by the `inelastic compaction envelope'.

Analysis and design of an ultrahigh temperature hydrogen-fueled MHD generator

NASA Technical Reports Server (NTRS)

Moder, Jeffrey P.; Myrabo, Leik N.; Kaminski, Deborah A.

1993-01-01

A coupled gas dynamics/radiative heat transfer analysis of partially ionized hydrogen, in local thermodynamic equilibrium, flowing through an ultrahigh temperature (10,000-20,000 K) magnetohydrodynamic (MHD) generator is performed. Gas dynamics are modeled by a set of quasi-one-dimensional, nonlinear differential equations which account for friction, convective and radiative heat transfer, and the interaction between the ionized gas and applied magnetic field. Radiative heat transfer is modeled using nongray, absorbing-emitting 2D and 3D P-1 approximations which permit an arbitrary variation of the spectral absorption coefficient with frequency. Gas dynamics and radiative heat transfer are coupled through the energy equation and through the temperature- and density-dependent absorption coefficient. The resulting nonlinear elliptic problem is solved by iterative methods. Design of such MHD generators as onboard, open-cycle, electric power supplies for a particular advanced airbreathing propulsion concept produced an efficient and compact 128-MWe generator characterized by an extraction ratio of 35.5 percent, a power density of 10,500 MWe/cu m, and a specific (extracted) energy of 324 MJe/kg of hydrogen. The maximum wall heat flux and total wall heat load were 453 MW/sq m and 62 MW, respectively.

Spontaneous Scalarization of Black Holes and Compact Stars from a Gauss-Bonnet Coupling.

PubMed

Silva, Hector O; Sakstein, Jeremy; Gualtieri, Leonardo; Sotiriou, Thomas P; Berti, Emanuele

2018-03-30

We identify a class of scalar-tensor theories with coupling between the scalar and the Gauss-Bonnet invariant that exhibit spontaneous scalarization for both black holes and compact stars. In particular, these theories formally admit all of the stationary solutions of general relativity, but these are not dynamically preferred if certain conditions are satisfied. Remarkably, black holes exhibit scalarization if their mass lies within one of many narrow bands. We find evidence that scalarization can occur in neutron stars as well.

Bending and buckling of viscoplastic threads

NASA Astrophysics Data System (ADS)

Hewitt, Ian; Balmforth, Neil

2012-11-01

We use a slender body theory to describe the dynamics of a thin viscoplastic thread undergoing extrusion, such as occurs when squeezing toothpaste from a tube. The theory adopts the Bingham model for a yield stress fluid, together with an asymptotic approximation for the stress and strain-rate profiles across the narrow width of the thread, which imply that the thread must either be rigid or fully yielded across its entire width. A compact description of the resultant longitudinal stress and moment acting on the thread allows these yielded and unyielded regions to be identified for given external forces. The theory is applied to extrusion flows; the yield stress prevents any deformation until a critical length of extrusion is reached, after which the dynamically evolving yielded regions mediate a distinctive drooping of a horizontal beam, or a catastrophic collapse of an upright beam.

An earthquake instability model based on faults containing high fluid-pressure compartments

USGS Publications Warehouse

Lockner, D.A.; Byerlee, J.D.

1995-01-01

It has been proposed that large strike-slip faults such as the San Andreas contain water in seal-bounded compartments. Arguments based on heat flow and stress orientation suggest that in most of the compartments, the water pressure is so high that the average shear strength of the fault is less than 20 MPa. We propose a variation of this basic model in which most of the shear stress on the fault is supported by a small number of compartments where the pore pressure is relatively low. As a result, the fault gouge in these compartments is compacted and lithified and has a high undisturbed strength. When one of these locked regions fails, the system made up of the neighboring high and low pressure compartments can become unstable. Material in the high fluid pressure compartments is initially underconsolidated since the low effective confining pressure has retarded compaction. As these compartments are deformed, fluid pressure remains nearly unchanged so that they offer little resistance to shear. The low pore pressure compartments, however, are overconsolidated and dilate as they are sheared. Decompression of the pore fluid in these compartments lowers fluid pressure, increasing effective normal stress and shear strength. While this effect tends to stabilize the fault, it can be shown that this dilatancy hardening can be more than offset by displacement weakening of the fault (i.e., the drop from peak to residual strength). If the surrounding rock mass is sufficiently compliant to produce an instability, slip will propagate along the fault until the shear fracture runs into a low-stress region. Frictional heating and the accompanying increase in fluid pressure that are suggested to occur during shearing of the fault zone will act as additional destabilizers. However, significant heating occurs only after a finite amount of slip and therefore is more likely to contribute to the energetics of rupture propagation than to the initiation of the instability. We present results of a one-dimensional dynamic Burridge-Knopoff-type model to demonstrate various aspects of the fluid-assisted fault instability described above. In the numerical model, the fault is represented by a series of blocks and springs, with fault rheology expressed by static and dynamic friction. In addition, the fault surface of each block has associated with it pore pressure, porosity and permeability. All of these variables are allowed to evolve with time, resulting in a wide range of phenomena related to fluid diffusion, dilatancy, compaction and heating. These phenomena include creep events, diffusion-controlled precursors, triggered earthquakes, foreshocks, aftershocks, and multiple earthquakes. While the simulations have limitations inherent to 1-D fault models, they demonstrate that the fluid compartment model can, in principle, provide the rich assortment of phenomena that have been associated with earthquakes. ?? 1995 Birkha??user Verlag.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang Xuenan; Zhang Yundong; Tian He

We propose to employ the storage of light in a dynamically tuned add-drop resonator to realize an optical gyroscope of ultrahigh sensitivity and compact size. Taking the impact of the linewidth of incident light on the sensitivity into account, we investigate the effect of rotation on the propagation of a partially coherent light field in this dynamically tuned slow-light structure. It is demonstrated that the fundamental trade-off between the rotation-detection sensitivity and the linewidth will be overcome and the sensitivity-linewidth product will be enhanced by two orders of magnitude in comparison to that of the corresponding static slow-light structure. Furthermore,more » the optical gyroscope employing the storage of light in the dynamically tuned add-drop resonator can acquire ultrahigh sensitivity by extremely short fiber length without a high-performance laser source of narrow linewidth and a complex laser frequency stabilization system. Thus the proposal in this paper provides a promising and feasible scheme to realize highly sensitive and compact integrated optical gyroscopes by slow-light structures.« less

A Novel Shape Parameterization Approach

NASA Technical Reports Server (NTRS)

Samareh, Jamshid A.

1999-01-01

This paper presents a novel parameterization approach for complex shapes suitable for a multidisciplinary design optimization application. The approach consists of two basic concepts: (1) parameterizing the shape perturbations rather than the geometry itself and (2) performing the shape deformation by means of the soft objects animation algorithms used in computer graphics. Because the formulation presented in this paper is independent of grid topology, we can treat computational fluid dynamics and finite element grids in a similar manner. The proposed approach is simple, compact, and efficient. Also, the analytical sensitivity derivatives are easily computed for use in a gradient-based optimization. This algorithm is suitable for low-fidelity (e.g., linear aerodynamics and equivalent laminated plate structures) and high-fidelity analysis tools (e.g., nonlinear computational fluid dynamics and detailed finite element modeling). This paper contains the implementation details of parameterizing for planform, twist, dihedral, thickness, and camber. The results are presented for a multidisciplinary design optimization application consisting of nonlinear computational fluid dynamics, detailed computational structural mechanics, performance, and a simple propulsion module.

Multidisciplinary Aerodynamic-Structural Shape Optimization Using Deformation (MASSOUD)

NASA Technical Reports Server (NTRS)

Samareh, Jamshid A.

2000-01-01

This paper presents a multidisciplinary shape parameterization approach. The approach consists of two basic concepts: (1) parameterizing the shape perturbations rather than the geometry itself and (2) performing the shape deformation by means of the soft object animation algorithms used in computer graphics. Because the formulation presented in this paper is independent of grid topology, we can treat computational fluid dynamics and finite element grids in the same manner. The proposed approach is simple, compact, and efficient. Also, the analytical sensitivity derivatives are easily computed for use in a gradient-based optimization. This algorithm is suitable for low-fidelity (e.g., linear aerodynamics and equivalent laminate plate structures) and high-fidelity (e.g., nonlinear computational fluid dynamics and detailed finite element modeling) analysis tools. This paper contains the implementation details of parameterizing for planform, twist, dihedral, thickness, camber, and free-form surface. Results are presented for a multidisciplinary application consisting of nonlinear computational fluid dynamics, detailed computational structural mechanics, and a simple performance module.

Multidisciplinary Aerodynamic-Structural Shape Optimization Using Deformation (MASSOUD)

NASA Technical Reports Server (NTRS)

Samareh, Jamshid A.

2000-01-01

This paper presents a multidisciplinary shape parameterization approach. The approach consists of two basic concepts: (1) parameterizing the shape perturbations rather than the geometry itself and (2) performing the shape deformation by means of the soft object animation algorithms used in computer graphics. Because the formulation presented in this paper is independent of grid topology, we can treat computational fluid dynamics and finite element grids in a similar manner. The proposed approach is simple, compact, and efficient. Also, the analytical sensitivity derivatives are easily computed for use in a gradient-based optimization. This algorithm is suitable for low-fidelity (e.g., linear aerodynamics and equivalent laminated plate structures) and high-fidelity (e.g., nonlinear computational fluid dynamics and detailed finite element modeling analysis tools. This paper contains the implementation details of parameterizing for planform, twist, dihedral, thickness, camber, and free-form surface. Results are presented for a multidisciplinary design optimization application consisting of nonlinear computational fluid dynamics, detailed computational structural mechanics, and a simple performance module.

Discrete particle modeling and micromechanical characterization of bilayer tablet compaction.

PubMed

Yohannes, B; Gonzalez, M; Abebe, A; Sprockel, O; Nikfar, F; Kiang, S; Cuitiño, A M

2017-08-30

A mechanistic particle scale model is proposed for bilayer tablet compaction. Making bilayer tablets involves the application of first layer compaction pressure on the first layer powder and a second layer compaction pressure on entire powder bed. The bonding formed between the first layer and the second layer particles is crucial for the mechanical strength of the bilayer tablet. The bonding and the contact forces between particles of the first layer and second layer are affected by the deformation and rearrangement of particles due to the compaction pressures. Our model takes into consideration the elastic and plastic deformations of the first layer particles due to the first layer compaction pressure, in addition to the mechanical and physical properties of the particles. Using this model, bilayer tablets with layers of the same material and different materials, which are commonly used pharmaceutical powders, are tested. The simulations show that the strength of the layer interface becomes weaker than the strength of the two layers as the first layer compaction pressure is increased. The reduction of strength at the layer interface is related to reduction of the first layer surface roughness. The reduced roughness decreases the available bonding area and hence reduces the mechanical strength at the interface. In addition, the simulations show that at higher first layer compaction pressure the bonding area is significantly less than the total contact area at the layer interface. At the interface itself, there is a non-monotonic relationship between the bonding area and first layer force. The bonding area at the interface first increases and then decreases as the first layer pressure is increased. These results are in agreement with findings of previous experimental studies. Copyright © 2017 Elsevier B.V. All rights reserved.

Effect of roll compaction on granule size distribution of microcrystalline cellulose–mannitol mixtures: computational intelligence modeling and parametric analysis

PubMed Central

Kazemi, Pezhman; Khalid, Mohammad Hassan; Pérez Gago, Ana; Kleinebudde, Peter; Jachowicz, Renata; Szlęk, Jakub; Mendyk, Aleksander

2017-01-01

Dry granulation using roll compaction is a typical unit operation for producing solid dosage forms in the pharmaceutical industry. Dry granulation is commonly used if the powder mixture is sensitive to heat and moisture and has poor flow properties. The output of roll compaction is compacted ribbons that exhibit different properties based on the adjusted process parameters. These ribbons are then milled into granules and finally compressed into tablets. The properties of the ribbons directly affect the granule size distribution (GSD) and the quality of final products; thus, it is imperative to study the effect of roll compaction process parameters on GSD. The understanding of how the roll compactor process parameters and material properties interact with each other will allow accurate control of the process, leading to the implementation of quality by design practices. Computational intelligence (CI) methods have a great potential for being used within the scope of quality by design approach. The main objective of this study was to show how the computational intelligence techniques can be useful to predict the GSD by using different process conditions of roll compaction and material properties. Different techniques such as multiple linear regression, artificial neural networks, random forest, Cubist and k-nearest neighbors algorithm assisted by sevenfold cross-validation were used to present generalized models for the prediction of GSD based on roll compaction process setting and material properties. The normalized root-mean-squared error and the coefficient of determination (R2) were used for model assessment. The best fit was obtained by Cubist model (normalized root-mean-squared error =3.22%, R2=0.95). Based on the results, it was confirmed that the material properties (true density) followed by compaction force have the most significant effect on GSD. PMID:28176905

Effect of roll compaction on granule size distribution of microcrystalline cellulose-mannitol mixtures: computational intelligence modeling and parametric analysis.

PubMed

Kazemi, Pezhman; Khalid, Mohammad Hassan; Pérez Gago, Ana; Kleinebudde, Peter; Jachowicz, Renata; Szlęk, Jakub; Mendyk, Aleksander

2017-01-01

Dry granulation using roll compaction is a typical unit operation for producing solid dosage forms in the pharmaceutical industry. Dry granulation is commonly used if the powder mixture is sensitive to heat and moisture and has poor flow properties. The output of roll compaction is compacted ribbons that exhibit different properties based on the adjusted process parameters. These ribbons are then milled into granules and finally compressed into tablets. The properties of the ribbons directly affect the granule size distribution (GSD) and the quality of final products; thus, it is imperative to study the effect of roll compaction process parameters on GSD. The understanding of how the roll compactor process parameters and material properties interact with each other will allow accurate control of the process, leading to the implementation of quality by design practices. Computational intelligence (CI) methods have a great potential for being used within the scope of quality by design approach. The main objective of this study was to show how the computational intelligence techniques can be useful to predict the GSD by using different process conditions of roll compaction and material properties. Different techniques such as multiple linear regression, artificial neural networks, random forest, Cubist and k-nearest neighbors algorithm assisted by sevenfold cross-validation were used to present generalized models for the prediction of GSD based on roll compaction process setting and material properties. The normalized root-mean-squared error and the coefficient of determination ( R 2 ) were used for model assessment. The best fit was obtained by Cubist model (normalized root-mean-squared error =3.22%, R 2 =0.95). Based on the results, it was confirmed that the material properties (true density) followed by compaction force have the most significant effect on GSD.

Detectability of compact binary merger macronovae

NASA Astrophysics Data System (ADS)

Rosswog, S.; Feindt, U.; Korobkin, O.; Wu, M.-R.; Sollerman, J.; Goobar, A.; Martinez-Pinedo, G.

2017-05-01

We study the optical and near-infrared luminosities and detectability of radioactively powered electromagnetic transients (‘macronovae’) occuring in the aftermath of binary neutron star and neutron star black hole mergers. We explore the transients that result from the dynamic ejecta and those from different types of wind outflows. Based on full nuclear network simulations we calculate the resulting light curves in different wavelength bands. We scrutinize the robustness of the results by comparing (a) two different nuclear reaction networks and (b) two macronova models. We explore in particular how sensitive the results are to the production of α-decaying trans-lead nuclei. We compare two frequently used mass models: the finite-range Droplet model (FRDM) and the nuclear mass model of Duflo and Zuker (DZ31). We find that the abundance of α-decaying trans-lead nuclei has a significant impact on the observability of the resulting macronovae. For example, the DZ31 model yields considerably larger abundances resulting in larger heating rates and thermalization efficiencies and therefore predicts substantially brighter macronova transients. We find that the dynamic ejecta from NSNS models can reach peak K-band magnitudes in excess of  -15 while those from NSBH cases can reach beyond  -16. Similar values can be reached by some of our wind models. Several of our models (both wind and dynamic ejecta) yield properties that are similar to the transient that was observed in the aftermath of the short GRB 130603B. We further explore the expected macronova detection frequencies for current and future instruments such as VISTA, ZTF and LSST.

Optimized scalable network switch

DOEpatents

Blumrich, Matthias A [Ridgefield, CT; Chen, Dong [Croton On Hudson, NY; Coteus, Paul W [Yorktown Heights, NY; Gara, Alan G [Mount Kisco, NY; Giampapa, Mark E [Irvington, NY; Heidelberger, Philip [Cortlandt Manor, NY; Steinmacher-Burow, Burkhard D [Mount Kisco, NY; Takken, Todd E [Mount Kisco, NY; Vranas, Pavlos M [Bedford Hills, NY

2007-12-04

In a massively parallel computing system having a plurality of nodes configured in m multi-dimensions, each node including a computing device, a method for routing packets towards their destination nodes is provided which includes generating at least one of a 2m plurality of compact bit vectors containing information derived from downstream nodes. A multilevel arbitration process in which downstream information stored in the compact vectors, such as link status information and fullness of downstream buffers, is used to determine a preferred direction and virtual channel for packet transmission. Preferred direction ranges are encoded and virtual channels are selected by examining the plurality of compact bit vectors. This dynamic routing method eliminates the necessity of routing tables, thus enhancing scalability of the switch.

Design study of an ultra-compact superconducting cyclotron for isotope production

NASA Astrophysics Data System (ADS)

Smirnov, V.; Vorozhtsov, S.; Vincent, J.

2014-11-01

A 12.5 MeV, 25 μA, proton compact superconducting cyclotron for medical isotope production has been designed and is currently in fabrication. The machine is initially aimed at producing 13N ammonia for Positron Emission Tomography (PET) cardiology applications. With an ultra-compact size and cost-effective price point, this system will offer clinicians unprecedented access to the preferred radiopharmaceutical isotope for cardiac PET imaging. A systems approach that carefully balanced the subsystem requirements coupled to precise beam dynamics calculations was followed. The system is designed to irradiate a liquid target internal to the cyclotron and to minimize the need for radiation shielding. The main parameters of the cyclotron, its design, and principal steps of the development work are presented here.

Optimized scalable network switch

DOEpatents

Blumrich, Matthias A.; Chen, Dong; Coteus, Paul W.

2010-02-23

In a massively parallel computing system having a plurality of nodes configured in m multi-dimensions, each node including a computing device, a method for routing packets towards their destination nodes is provided which includes generating at least one of a 2m plurality of compact bit vectors containing information derived from downstream nodes. A multilevel arbitration process in which downstream information stored in the compact vectors, such as link status information and fullness of downstream buffers, is used to determine a preferred direction and virtual channel for packet transmission. Preferred direction ranges are encoded and virtual channels are selected by examining the plurality of compact bit vectors. This dynamic routing method eliminates the necessity of routing tables, thus enhancing scalability of the switch.

Silica-based, compact and variable-optical-attenuator integrated coherent receiver with stable optoelectronic coupling system.

PubMed

Tsunashima, Satoshi; Nakajima, Fumito; Nasu, Yusuke; Kasahara, Ryoichi; Nakanishi, Yasuhiko; Saida, Takashi; Yamada, Takashi; Sano, Kimikazu; Hashimoto, Toshikazu; Fukuyama, Hiroyuki; Nosaka, Hideaki; Murata, Koichi

2012-11-19

We demonstrate a compact and variable-optical-attenuator (VOA) integrated coherent receiver with a silica-based planar lightwave circuit (PLC). To realize the compact receiver, we integrate a VOA in a single PLC chip with polarization beam splitters and optical 90-degree hybrids, and employ a stable optoelectronic coupling system consisting of micro lens arrays and photodiode (PD) subcarriers with high-speed right-angled signal lines. We integrate a VOA and a coherent receiver in a 27x40x6 mm package, and successfully demodulate a 128-Gbit/s polarization division multiplexed (PDM) quadrature phase shift keying (QPSK) signal with a VOA-assisted wide dynamic range of more than 30 dB.

Laser or charged-particle-beam fusion reactor with direct electric generation by magnetic flux compression

DOEpatents

Lasche, G.P.

1983-09-29

The invention is a laser or particle-beam-driven fusion reactor system which takes maximum advantage of both the very short pulsed nature of the energy release of inertial confinement fusion (ICF) and the very small volumes within which the thermonuclear burn takes place. The pulsed nature of ICF permits dynamic direct energy conversion schemes such as magnetohydrodynamic (MHD) generation and magnetic flux compression; the small volumes permit very compact blanket geometries. By fully exploiting these characteristics of ICF, it is possible to design a fusion reactor with exceptionally high power density, high net electric efficiency, and low neutron-induced radioactivity. The invention includes a compact blanket design and method and apparatus for obtaining energy utilizing the compact blanket.

Design of a rapid magnetic microfluidic mixer

NASA Astrophysics Data System (ADS)

Ballard, Matthew; Owen, Drew; Mills, Zachary Grant; Hanasoge, Srinivas; Hesketh, Peter; Alexeev, Alexander

2015-11-01

Using three-dimensional simulations and experiments, we demonstrate rapid mixing of fluid streams in a microchannel using orbiting magnetic microbeads. We use a lattice Boltzmann model coupled to a Brownian dynamics model to perform numerical simulations that study in depth the effect of system parameters such as channel configuration and fluid and bead velocities. We use our findings to aid the design of an experimental micromixer. Using this experimental device, we demonstrate rapid microfluidic mixing over a compact channel length, and validate our numerical simulation results. Finally, we use numerical simulations to study the physical mechanisms leading to microfluidic mixing in our system. Our findings demonstrate a promising method of rapid microfluidic mixing over a short distance, with applications in lab-on-a-chip sample testing.

Outcomes of Grazing Impacts between Sub-Neptunes in Kepler  Multis

NASA Astrophysics Data System (ADS)

Hwang, Jason; Chatterjee, Sourav; Lombardi, James, Jr.; Steffen, Jason H.; Rasio, Frederic

2018-01-01

Studies of high-multiplicity, tightly packed planetary systems suggest that dynamical instabilities are common and affect both the orbits and planet structures, where the compact orbits and typically low densities make physical collisions likely outcomes. Since the structure of many of these planets is such that the mass is dominated by a rocky core, but the volume is dominated by a tenuous gas envelope, the sticky-sphere approximation, used in dynamical integrators, may be a poor model for these collisions. We perform five sets of collision calculations, including detailed hydrodynamics, sampling mass ratios, and core mass fractions typical in Kepler Multis. In our primary set of calculations, we use Kepler-36 as a nominal remnant system, as the two planets have a small dynamical separation and an extreme density ratio. We use an N-body code, Mercury 6.2, to integrate initially unstable systems and study the resultant collisions in detail. We use these collisions, focusing on grazing collisions, in combination with realistic planet models created using gas profiles from Modules for Experiments in Stellar Astrophysics and core profiles using equations of state from Seager et al. to perform hydrodynamic calculations, finding scatterings, mergers, and even a potential planet–planet binary. We dynamically integrate the remnant systems, examine the stability, and estimate the final densities, finding that the remnant densities are sensitive to the core masses, and collisions result in generally more stable systems. We provide prescriptions for predicting the outcomes and modeling the changes in mass and orbits following collisions for general use in dynamical integrators.

A simple physical model for X-ray burst sources

NASA Technical Reports Server (NTRS)

Joss, P. C.; Rappaport, S.

1977-01-01

In connection with information considered by Illarianov and Sunyaev (1975) and van den Heuvel (1975), a simple physical model for an X-ray burst source in the galactic disk is proposed. The model includes an unevolved OB star with a relatively weak stellar wind and a compact object in a close binary system. For some reason, the stellar wind from the OB star is unable to accrete steadily on to the compact object. When the stellar wind is sufficiently weak, the compact object accretes irregularly, leading to X-ray bursts.

Explosive compaction of aluminum oxide modified by multiwall carbon nanotubes

NASA Astrophysics Data System (ADS)

Buzyurkin, A. E.; Kraus, E. I.; Lukyanov, Ya L.

2018-04-01

This paper presents experiments and numerical research on explosive compaction of aluminum oxide powder modified by multiwall carbon nanotubes (MWCNT) and modeling of the stress state behind the shock front at shock loading. The aim of this study was to obtain a durable low-porosity compact sample. The explosive compaction technology is used in this problem because the aluminum oxide is an extremely hard and refractory material. Therefore, its compaction by traditional methods requires special equipment and considerable expenses.

A hybrid learning method for constructing compact rule-based fuzzy models.

PubMed

Zhao, Wanqing; Niu, Qun; Li, Kang; Irwin, George W

2013-12-01

The Takagi–Sugeno–Kang-type rule-based fuzzy model has found many applications in different fields; a major challenge is, however, to build a compact model with optimized model parameters which leads to satisfactory model performance. To produce a compact model, most existing approaches mainly focus on selecting an appropriate number of fuzzy rules. In contrast, this paper considers not only the selection of fuzzy rules but also the structure of each rule premise and consequent, leading to the development of a novel compact rule-based fuzzy model. Here, each fuzzy rule is associated with two sets of input attributes, in which the first is used for constructing the rule premise and the other is employed in the rule consequent. A new hybrid learning method combining the modified harmony search method with a fast recursive algorithm is hereby proposed to determine the structure and the parameters for the rule premises and consequents. This is a hard mixed-integer nonlinear optimization problem, and the proposed hybrid method solves the problem by employing an embedded framework, leading to a significantly reduced number of model parameters and a small number of fuzzy rules with each being as simple as possible. Results from three examples are presented to demonstrate the compactness (in terms of the number of model parameters and the number of rules) and the performance of the fuzzy models obtained by the proposed hybrid learning method, in comparison with other techniques from the literature.

Finite Element Modelling of a Field-Sensed Magnetic Suspended System for Accurate Proximity Measurement Based on a Sensor Fusion Algorithm with Unscented Kalman Filter

PubMed Central

Chowdhury, Amor; Sarjaš, Andrej

2016-01-01

The presented paper describes accurate distance measurement for a field-sensed magnetic suspension system. The proximity measurement is based on a Hall effect sensor. The proximity sensor is installed directly on the lower surface of the electro-magnet, which means that it is very sensitive to external magnetic influences and disturbances. External disturbances interfere with the information signal and reduce the usability and reliability of the proximity measurements and, consequently, the whole application operation. A sensor fusion algorithm is deployed for the aforementioned reasons. The sensor fusion algorithm is based on the Unscented Kalman Filter, where a nonlinear dynamic model was derived with the Finite Element Modelling approach. The advantage of such modelling is a more accurate dynamic model parameter estimation, especially in the case when the real structure, materials and dimensions of the real-time application are known. The novelty of the paper is the design of a compact electro-magnetic actuator with a built-in low cost proximity sensor for accurate proximity measurement of the magnetic object. The paper successively presents a modelling procedure with the finite element method, design and parameter settings of a sensor fusion algorithm with Unscented Kalman Filter and, finally, the implementation procedure and results of real-time operation. PMID:27649197

Finite Element Modelling of a Field-Sensed Magnetic Suspended System for Accurate Proximity Measurement Based on a Sensor Fusion Algorithm with Unscented Kalman Filter.

PubMed

Chowdhury, Amor; Sarjaš, Andrej

2016-09-15

The presented paper describes accurate distance measurement for a field-sensed magnetic suspension system. The proximity measurement is based on a Hall effect sensor. The proximity sensor is installed directly on the lower surface of the electro-magnet, which means that it is very sensitive to external magnetic influences and disturbances. External disturbances interfere with the information signal and reduce the usability and reliability of the proximity measurements and, consequently, the whole application operation. A sensor fusion algorithm is deployed for the aforementioned reasons. The sensor fusion algorithm is based on the Unscented Kalman Filter, where a nonlinear dynamic model was derived with the Finite Element Modelling approach. The advantage of such modelling is a more accurate dynamic model parameter estimation, especially in the case when the real structure, materials and dimensions of the real-time application are known. The novelty of the paper is the design of a compact electro-magnetic actuator with a built-in low cost proximity sensor for accurate proximity measurement of the magnetic object. The paper successively presents a modelling procedure with the finite element method, design and parameter settings of a sensor fusion algorithm with Unscented Kalman Filter and, finally, the implementation procedure and results of real-time operation.

High-Performance Integrated Control of water quality and quantity in urban water reservoirs

NASA Astrophysics Data System (ADS)

Galelli, S.; Castelletti, A.; Goedbloed, A.

2015-11-01

This paper contributes a novel High-Performance Integrated Control framework to support the real-time operation of urban water supply storages affected by water quality problems. We use a 3-D, high-fidelity simulation model to predict the main water quality dynamics and inform a real-time controller based on Model Predictive Control. The integration of the simulation model into the control scheme is performed by a model reduction process that identifies a low-order, dynamic emulator running 4 orders of magnitude faster. The model reduction, which relies on a semiautomatic procedural approach integrating time series clustering and variable selection algorithms, generates a compact and physically meaningful emulator that can be coupled with the controller. The framework is used to design the hourly operation of Marina Reservoir, a 3.2 Mm3 storm-water-fed reservoir located in the center of Singapore, operated for drinking water supply and flood control. Because of its recent formation from a former estuary, the reservoir suffers from high salinity levels, whose behavior is modeled with Delft3D-FLOW. Results show that our control framework reduces the minimum salinity levels by nearly 40% and cuts the average annual deficit of drinking water supply by about 2 times the active storage of the reservoir (about 4% of the total annual demand).

Testing strong-field gravity with tidal Love numbers

NASA Astrophysics Data System (ADS)

Cardoso, Vitor; Franzin, Edgardo; Maselli, Andrea; Pani, Paolo; Raposo, Guilherme

2017-04-01

The tidal Love numbers (TLNs) encode the deformability of a self-gravitating object immersed in a tidal environment and depend significantly both on the object's internal structure and on the dynamics of the gravitational field. An intriguing result in classical general relativity is the vanishing of the TLNs of black holes. We extend this result in three ways, aiming at testing the nature of compact objects: (i) we compute the TLNs of exotic compact objects, including different families of boson stars, gravastars, wormholes, and other toy models for quantum corrections at the horizon scale. In the black-hole limit, we find a universal logarithmic dependence of the TLNs on the location of the surface. (ii) We compute the TLNs of black holes beyond vacuum general relativity, including Einstein-Maxwell, Brans-Dicke, and Chern-Simons gravity. (iii) We assess the ability of present and future gravitational-wave detectors to measure the TLNs of these objects, including the first analysis of TLNs with LISA. Both LIGO, ET, and LISA can impose interesting constraints on boson stars, while LISA is able to probe even extremely compact objects. We argue that the TLNs provide a smoking gun of new physics at the horizon scale and that future gravitational-wave measurements of the TLNs in a binary inspiral provide a novel way to test black holes and general relativity in the strong-field regime.

Interrogating heterogeneous compaction of meteoritic material at the mesoscale using analog experiments and numerical models

NASA Astrophysics Data System (ADS)

Derrick, James; Rutherford, Michael; Davison, Thomas; Chapman, David; Eakins, Daniel; Collins, Gareth

2017-06-01

Chondritic meteorites were lithified during solar system formation by compaction of bimodal mixtures of mm-scale, spherical, solidified melt droplets (chondrules) surrounded by a porous matrix of much finer grained dust. A possible compaction mechanism is low-velocity planetesimal collisions, which were common in the early solar system. Mesoscale numerical simulations of such impacts indicate heterogeneous compaction, with large porosity and temperature variations over sub-mm scales in the matrix and chondrules largely unaffected. In particular, compaction and heating are enhanced in front of the chondrule and suppressed in its wake. Such observations may provide a new tool for interpreting evidence for impact in meteorites. Here we present impact experiments that replicate compaction surrounding an individual chondrule using analog materials: Soda Lime glass beads/rods and 70% porous silica powder matrix (Sipernat). Real-time, X-ray imaging of the experiments, combined with mesoscale modelling, provides experimental confirmation of anisotropic matrix compaction surrounding individual chondrules, aligned with the shock direction. JGD is supported by EPSRC studentship funding; GSC are supported by STFC Grant ST/N000803/1.

Visual analysis of immiscible displacement processes in porous media under ultrasound effect

NASA Astrophysics Data System (ADS)

Naderi, Khosrow; Babadagli, Tayfun

2011-05-01

The effect of sonic waves, in particular, ultrasonic radiation, on immiscible displacement in porous media and enhanced oil recovery has been of interest for more than five decades. Attempts were made to investigate the effect through core scale experimental or theoretical models. Visual experiments are useful to scrutinize the reason for improved oil recovery under acoustic waves of different frequency but are not abundant in literature. In this paper, we report observations and analyses as to the effects of ultrasonic energy on immiscible displacement and interaction of the fluid matrix visually in porous media through two-dimensional (2D) sand pack experiments. 2D glass bead models with different wettabilities were saturated with different viscosity oils and water was injected into the models. The experiments were conducted with and without ultrasound. Dynamic water injection experiments were preferred as they had both viscous and capillary forces in effect. The displacement patterns were evaluated both in terms of their shape, size, and the interface characteristics quantitatively and qualitatively to account for the effects of ultrasonic waves on the displacement and the reason for increased oil production under this type of sonic wave. More compact clusters were observed when ultrasonic energy was present in water-wet systems. In the oil-wet cases, more oil was produced after breakthrough when ultrasound was applied and no compact clusters were formed in contrast to the water-wet cases.

Design of voice coil motor dynamic focusing unit for a laser scanner

NASA Astrophysics Data System (ADS)

Lee, Moon G.; Kim, Gaeun; Lee, Chan-Woo; Lee, Soo-Hun; Jeon, Yongho

2014-04-01

Laser scanning systems have been used for material processing tasks such as welding, cutting, marking, and drilling. However, applications have been limited by the small range of motion and slow speed of the focusing unit, which carries the focusing optics. To overcome these limitations, a dynamic focusing system with a long travel range and high speed is needed. In this study, a dynamic focusing unit for a laser scanning system with a voice coil motor (VCM) mechanism is proposed to enable fast speed and a wide focusing range. The VCM has finer precision and higher speed than conventional step motors and a longer travel range than earlier lead zirconium titanate actuators. The system has a hollow configuration to provide a laser beam path. This also makes it compact and transmission-free and gives it low inertia. The VCM's magnetics are modeled using a permeance model. Its design parameters are determined by optimization using the Broyden-Fletcher-Goldfarb-Shanno method and a sequential quadratic programming algorithm. After the VCM is designed, the dynamic focusing unit is fabricated and assembled. The permeance model is verified by a magnetic finite element method simulation tool, Maxwell 2D and 3D, and by measurement data from a gauss meter. The performance is verified experimentally. The results show a resolution of 0.2 μm and travel range of 16 mm. These are better than those of conventional focusing systems; therefore, this focusing unit can be applied to laser scanning systems for good machining capability.

Design of voice coil motor dynamic focusing unit for a laser scanner.

PubMed

Lee, Moon G; Kim, Gaeun; Lee, Chan-Woo; Lee, Soo-Hun; Jeon, Yongho

2014-04-01

Laser scanning systems have been used for material processing tasks such as welding, cutting, marking, and drilling. However, applications have been limited by the small range of motion and slow speed of the focusing unit, which carries the focusing optics. To overcome these limitations, a dynamic focusing system with a long travel range and high speed is needed. In this study, a dynamic focusing unit for a laser scanning system with a voice coil motor (VCM) mechanism is proposed to enable fast speed and a wide focusing range. The VCM has finer precision and higher speed than conventional step motors and a longer travel range than earlier lead zirconium titanate actuators. The system has a hollow configuration to provide a laser beam path. This also makes it compact and transmission-free and gives it low inertia. The VCM's magnetics are modeled using a permeance model. Its design parameters are determined by optimization using the Broyden-Fletcher-Goldfarb-Shanno method and a sequential quadratic programming algorithm. After the VCM is designed, the dynamic focusing unit is fabricated and assembled. The permeance model is verified by a magnetic finite element method simulation tool, Maxwell 2D and 3D, and by measurement data from a gauss meter. The performance is verified experimentally. The results show a resolution of 0.2 μm and travel range of 16 mm. These are better than those of conventional focusing systems; therefore, this focusing unit can be applied to laser scanning systems for good machining capability.

Effects of true density, compacted mass, compression speed, and punch deformation on the mean yield pressure.

PubMed

Gabaude, C M; Guillot, M; Gautier, J C; Saudemon, P; Chulia, D

1999-07-01

Compressibility properties of pharmaceutical materials are widely characterized by measuring the volume reduction of a powder column under pressure. Experimental data are commonly analyzed using the Heckel model from which powder deformation mechanisms are determined using mean yield pressure (Py). Several studies from the literature have shown the effects of operating conditions on the determination of Py and have pointed out the limitations of this model. The Heckel model requires true density and compacted mass values to determine Py from force-displacement data. It is likely that experimental errors will be introduced when measuring the true density and compacted mass. This study investigates the effects of true density and compacted mass on Py. Materials having different particle deformation mechanisms are studied. Punch displacement and applied pressure are measured for each material at two compression speeds. For each material, three different true density and compacted mass values are utilized to evaluate their effect on Py. The calculated variation of Py reaches 20%. This study demonstrates that the errors in measuring true density and compacted mass have a greater effect on Py than the errors incurred from not correcting the displacement measurements due to punch elasticity.

Modeling of Compaction Wave Behavior in Confined Granular Energetic Material

DTIC Science & Technology

1990-08-01

Compacted 65% TMD Aggregate Melamine Compaction Wave Microwave DIAGNOSTICS: Interferometry (a) Microwave Interferometry (b) 3 Wall-Mounted Pressure...involved 65% TMD melamine but was run very recently (Dec 1989) The value of compaction wave speed (from the microwave data) just after impact is...47 B. Simulation of PDC-M34 / 65% TMD Melamine (Inert Material) ........ 54 C. Influence of Energy Release / PDC Experiment

On the Influence of Material Parameters in a Complex Material Model for Powder Compaction

NASA Astrophysics Data System (ADS)

Staf, Hjalmar; Lindskog, Per; Andersson, Daniel C.; Larsson, Per-Lennart

2016-10-01

Parameters in a complex material model for powder compaction, based on a continuum mechanics approach, are evaluated using real insert geometries. The parameter sensitivity with respect to density and stress after compaction, pertinent to a wide range of geometries, is studied in order to investigate completeness and limitations of the material model. Finite element simulations with varied material parameters are used to build surrogate models for the sensitivity study. The conclusion from this analysis is that a simplification of the material model is relevant, especially for simple insert geometries. Parameters linked to anisotropy and the plastic strain evolution angle have a small impact on the final result.

Brittle to ductile transition in a model of sheared granular materials

NASA Astrophysics Data System (ADS)

Elbanna, Ahmed; Ma, Xiao

Understanding the fundamental mechanisms of deformation and failure in sheared fault gouge is critical for the development of physics-based earthquake rupture simulations that are becoming an essential ingredient in next generation hazard and risk models. To that end, we use the shear transformation zone (STZ) theory, a non-equilibrium statistical thermodynamics framework to describe viscoplastic deformation and localization in gouge materials as a first step towards developing multiscale models for earthquake source processes that are informed by high-resolution fault zone physics. We will describe an implementation of this theory in a 2D/3D finite element framework, accounting for finite deformation, under both axial and shear loading and for dry and saturated conditions. We examine conditions under which a localized shear band may form and show that the initial value of disorder plays an important role. In particular, our simulations suggest that if the material is more compact initially, the behavior is more brittle and the plastic deformation localizes with large strength drop. On the other hand, an initially loose material will show a more ductile response and the plastic deformations will be distributed more broadly. We will further show that incorporation of pore fluids alters the localization pattern and changes the stress slip response due to coupling between gouge volume changes (compaction and dilation) and pore pressure build up. Finally, we discuss the implications of our model for gouge friction and dynamic weakening.

Recovery of severely compacted soils in the Mojave Desert, California, USA

USGS Publications Warehouse

Webb, R.H.

2002-01-01

Often as a result of large-scale military maneuvers in the past, many soils in the Mojave Desert are highly vulnerable to soil compaction, particularly when wet. Previous studies indicate that natural recovery of severely compacted desert soils is extremely slow, and some researchers have suggested that subsurface compaction may not recover. Poorly sorted soils, particularly those with a loamy sand texture, are most vulnerable to soil compaction, and these soils are the most common in alluvial fans of the Mojave Desert. Recovery of compacted soil is expected to vary as a function of precipitation amounts, wetting-and-drying cycles, freeze-thaw cycles, and bioturbation, particularly root growth. Compaction recovery, as estimated using penetration depth and bulk density, was measured at 19 sites with 32 site-time combinations, including the former World War II Army sites of Camps Ibis, Granite, Iron Mountain, Clipper, and Essex. Although compaction at these sites was caused by a wide variety of forces, ranging from human trampling to tank traffic, the data do not allow segregation of differences in recovery rates for different compaction forces. The recovery rate appears to be logarithmic, with the highest rate of change occurring in the first few decades following abandonment. Some higher-elevation sites have completely recovered from soil compaction after 70 years. Using a linear model of recovery, the full recovery time ranges from 92 to 100 years; using a logarithmic model, which asymptotically approaches full recovery, the time required for 85% recovery ranges from 105-124 years.

The DARPA compact superconducting x-ray lithography source features. [Defense Advanced Research Projects Agency (DARPA)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heese, R.; Kalsi, S.; Leung, E.

1991-01-01

Under DARPA sponsorship, a compact Superconducting X-ray Lithography Source (SXLS) is being designed and built by the Brookhaven National Laboratory (BNL) with industry participation from Grumman Corporation and General Dynamics. This source is optimized for lithography work for sub-micron high density computer chips, and is about the size of a billiard table (1.5 m {times} 4.0 m). The machine has a racetrack configuration with two 180{degree} bending magnets being designed and built by General Dynamics under a subcontract with Grumman Corporation. The machine will have 18 photon ports which would deliver light peaked at a wave length of 10 Angstroms.more » Grumman is commercializing the SXLS device and plans to book orders for delivery of industrialized SXLS (ISXLS) versions in 1995. This paper will describe the major features of this device. The commercial machine will be equipped with a fully automated user-friendly control systems, major features of which are already working on a compact warm dipole ring at BNL. This ring has normal dipole magnets with dimensions identical to the SXLS device, and has been successfully commissioned. 4 figs., 1 tab.« less

Comparison between instrumented precracked Charpy and compact specimen tests of carbon steels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nanstad, R.K.

1980-01-01

The General Atomic Company High Temperature Gas-Cooled Reactor (HTGR) is housed within a prestressed concrete reactor vessel (PCRV). Various carbon steel structural members serve as closures at penetrations in the vessel. A program of testing and evaluation is underway to determine the need for reference fracture toughness (K/sub IR/) and indexing procedures for these materials as described in Appendix G to Section III, ASME Code for light water reactor steels. The materials of interest are carbon steel forgings (SA508, Class 1) and plates (SA537, Classes 1 and 2) as well as weldments of these steels. The fracture toughness behavior ismore » characterized with instrumented precracked Charpy V-votch specimens (PCVN) - slow-bend and dynamic - and compact specimens (10-mm and 25-mm thicknesses) using both linear elastic (ASTM E399) and elastic-plastic (equivalent Energy and J-Integral) analytical procedures. For the dynamic PCVN tests, force-time traces are analyzed according to the procedures of the Pressure Vessel Research Council (PVRC)/Metal Properties Council (MPC). Testing and analytical procedures are discussed and PCVN results are compared to those obtained with compact specimens.« less

A new surface-potential-based compact model for the MoS2 field effect transistors in active matrix display applications

NASA Astrophysics Data System (ADS)

Cao, Jingchen; Peng, Songang; Liu, Wei; Wu, Quantan; Li, Ling; Geng, Di; Yang, Guanhua; Ji, Zhouyu; Lu, Nianduan; Liu, Ming

2018-02-01

We present a continuous surface-potential-based compact model for molybdenum disulfide (MoS2) field effect transistors based on the multiple trapping release theory and the variable-range hopping theory. We also built contact resistance and velocity saturation models based on the analytical surface potential. This model is verified with experimental data and is able to accurately predict the temperature dependent behavior of the MoS2 field effect transistor. Our compact model is coded in Verilog-A, which can be implemented in a computer-aided design environment. Finally, we carried out an active matrix display simulation, which suggested that the proposed model can be successfully applied to circuit design.

A novel phenomenological model for dynamic behavior of magnetorheological elastomers in tension-compression mode

NASA Astrophysics Data System (ADS)

Vatandoost, Hossein; Norouzi, Mahmood; Masoud Sajjadi Alehashem, Seyed; Smoukov, Stoyan K.

2017-06-01

Tension-compression operation in MR elastomers (MREs) offers both the most compact design and superior stiffness in many vertical load-bearing applications, such as MRE bearing isolators in bridges and buildings, suspension systems and engine mounts in cars, and vibration control equipment. It suffers, however, from lack of good computational models to predict device performance, and as a result shear-mode MREs are widely used in the industry, despite their low stiffness and load-bearing capacity. We start with a comprehensive review of modeling of MREs and their dynamic characteristics, showing previous studies have mostly focused on dynamic behavior of MREs in shear mode, though the MRE strength and MR effect are greatly decreased at high strain amplitudes, due to increasing distance between the magnetic particles. Moreover, the characteristic parameters of the current models assume either frequency, or strain, or magnetic field are constant; hence, new model parameters must be recalculated for new loading conditions. This is an experimentally time consuming and computationally expensive task, and no models capture the full dynamic behavior of the MREs at all loading conditions. In this study, we present an experimental setup to test MREs in a coupled tension-compression mode, as well as a novel phenomenological model which fully predicts the stress-strain material behavior as a function of magnetic flux density, loading frequency and strain. We use a training set of experiments to find the experimentally derived model parameters, from which can predict by interpolation the MRE behavior in a relatively large continuous range of frequency, strain and magnetic field. We also challenge the model to make extrapolating predictions and compare to additional experiments outside the training experimental data set with good agreement. Further development of this model would allow design and control of engineering structures equipped with tension-compression MREs and all the advantages they offer.

APPLICATION OF FLOW SIMULATION FOR EVALUATION OF FILLING-ABILITY OF SELF-COMPACTING CONCRETE

NASA Astrophysics Data System (ADS)

Urano, Shinji; Nemoto, Hiroshi; Sakihara, Kohei

In this paper, MPS method was applied to fluid an alysis of self-compacting concrete. MPS method is one of the particle method, and it is suitable for the simulation of moving boundary or free surface problems and large deformation problems. The constitutive equation of self-compacting concrete is assumed as bingham model. In order to investigate flow Stoppage and flow speed of self-compacting concrete, numerical analysis examples of slump flow and L-flow test were performed. In addition, to evaluate verification of compactability of self-compacting concrete, numerical analys is examples of compaction at the part of CFT diaphragm were performed. As a result, it was found that the MPS method was suitable for the simulation of compaction of self-compacting concrete, and a just appraisal was obtained by setting shear strain rate of flow-limit πc and limitation point of segregation.

Uncertainty quantification of overpressure buildup through inverse modeling of compaction processes in sedimentary basins

NASA Astrophysics Data System (ADS)

Colombo, Ivo; Porta, Giovanni M.; Ruffo, Paolo; Guadagnini, Alberto

2017-03-01

This study illustrates a procedure conducive to a preliminary risk analysis of overpressure development in sedimentary basins characterized by alternating depositional events of sandstone and shale layers. The approach rests on two key elements: (1) forward modeling of fluid flow and compaction, and (2) application of a model-complexity reduction technique based on a generalized polynomial chaos expansion (gPCE). The forward model considers a one-dimensional vertical compaction processes. The gPCE model is then used in an inverse modeling context to obtain efficient model parameter estimation and uncertainty quantification. The methodology is applied to two field settings considered in previous literature works, i.e. the Venture Field (Scotian Shelf, Canada) and the Navarin Basin (Bering Sea, Alaska, USA), relying on available porosity and pressure information for model calibration. It is found that the best result is obtained when porosity and pressure data are considered jointly in the model calibration procedure. Uncertainty propagation from unknown input parameters to model outputs, such as pore pressure vertical distribution, is investigated and quantified. This modeling strategy enables one to quantify the relative importance of key phenomena governing the feedback between sediment compaction and fluid flow processes and driving the buildup of fluid overpressure in stratified sedimentary basins characterized by the presence of low-permeability layers. The results here illustrated (1) allow for diagnosis of the critical role played by the parameters of quantitative formulations linking porosity and permeability in compacted shales and (2) provide an explicit and detailed quantification of the effects of their uncertainty in field settings.

Ice-sheet modelling accelerated by graphics cards

NASA Astrophysics Data System (ADS)

Brædstrup, Christian Fredborg; Damsgaard, Anders; Egholm, David Lundbek

2014-11-01

Studies of glaciers and ice sheets have increased the demand for high performance numerical ice flow models over the past decades. When exploring the highly non-linear dynamics of fast flowing glaciers and ice streams, or when coupling multiple flow processes for ice, water, and sediment, researchers are often forced to use super-computing clusters. As an alternative to conventional high-performance computing hardware, the Graphical Processing Unit (GPU) is capable of massively parallel computing while retaining a compact design and low cost. In this study, we present a strategy for accelerating a higher-order ice flow model using a GPU. By applying the newest GPU hardware, we achieve up to 180× speedup compared to a similar but serial CPU implementation. Our results suggest that GPU acceleration is a competitive option for ice-flow modelling when compared to CPU-optimised algorithms parallelised by the OpenMP or Message Passing Interface (MPI) protocols.

Chemical consequences of compaction within the freezing front of a crystallizing magma ocean

NASA Astrophysics Data System (ADS)

Hier-Majumder, S.; Hirschmann, M. M.

2013-12-01

The thermal and compositional evolution of planetary magma oceans have profound influences on the early development and differentiation of terrestrial planets. During crystallization, rejection of elements incompatible in precipitating solids leads to petrologic and geochemical planetary differentiation, including potentially development of a compositionally stratified early mantle and evolution of thick overlying atmospheres. In cases of extremely efficient segregation of melt and crystals, solidified early mantles can be nearly devoid of key incompatible species including heat-producing (U, Th, K) and volatile (H,C,N,& noble gas) elements. A key structural component of a crystallizing magma ocean is the partially molten freezing front. The dynamics of this region influences the distribution of incompatible elements between the earliest mantle and the initial surficial reservoirs. It also can be the locus of heating owing to the dissipation of large amounts of tidal energy potentially available from the early Moon. The dynamics are influenced by the solidification rate, which is coupled to the liberation of volatiles owing to the modulating greenhouse effects in the overlying thick atmosphere. Compaction and melt retention in the freezing front of a magma ocean has received little previous attention. While the front advances during the course of crystallization, coupled conservation of mass, momentum, and energy within the front controls distribution and retention of melt within this layer. Due to compaction within this layer, melt distribution is far from uniform, and the fraction of melt trapped within this front depends on the rate of freezing of the magma ocean. During phases of rapid freezing, high amount of trapped melt within the freezing front retains a larger quantity of dissolved volatiles and the reverse is true during slow periods of crystallization. Similar effects are known from inferred trapped liquid fractions in layered mafic intrusions. Here we develop a simple 1-D model of melt retention in the freezing front of a crystallizing magma ocean, and apply it to the thermal and chemical evolution of the early Earth.

Explicit 2-D Hydrodynamic FEM Program

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Jerry

1996-08-07

DYNA2D* is a vectorized, explicit, two-dimensional, axisymmetric and plane strain finite element program for analyzing the large deformation dynamic and hydrodynamic response of inelastic solids. DYNA2D* contains 13 material models and 9 equations of state (EOS) to cover a wide range of material behavior. The material models implemented in all machine versions are: elastic, orthotropic elastic, kinematic/isotropic elastic plasticity, thermoelastoplastic, soil and crushable foam, linear viscoelastic, rubber, high explosive burn, isotropic elastic-plastic, temperature-dependent elastic-plastic. The isotropic and temperature-dependent elastic-plastic models determine only the deviatoric stresses. Pressure is determined by one of 9 equations of state including linear polynomial, JWL highmore » explosive, Sack Tuesday high explosive, Gruneisen, ratio of polynomials, linear polynomial with energy deposition, ignition and growth of reaction in HE, tabulated compaction, and tabulated.« less

Strain-rate effect on initial crush stress of irregular honeycomb under dynamic loading and its deformation mechanism

NASA Astrophysics Data System (ADS)

Wang, Peng; Zheng, Zhijun; Liao, Shenfei; Yu, Jilin

2018-02-01

The seemingly contradictory understandings of the initial crush stress of cellular materials under dynamic loadings exist in the literature, and a comprehensive analysis of this issue is carried out with using direct information of local stress and strain. Local stress/strain calculation methods are applied to determine the initial crush stresses and the strain rates at initial crush from a cell-based finite element model of irregular honeycomb under dynamic loadings. The initial crush stress under constant-velocity compression is identical to the quasi-static one, but less than the one under direct impact, i.e. the initial crush stresses under different dynamic loadings could be very different even though there is no strain-rate effect of matrix material. A power-law relation between the initial crush stress and the strain rate is explored to describe the strain-rate effect on the initial crush stress of irregular honeycomb when the local strain rate exceeds a critical value, below which there is no strain-rate effect of irregular honeycomb. Deformation mechanisms of the initial crush behavior under dynamic loadings are also explored. The deformation modes of the initial crush region in the front of plastic compaction wave are different under different dynamic loadings.

System-wide hybrid MPC-PID control of a continuous pharmaceutical tablet manufacturing process via direct compaction.

PubMed

Singh, Ravendra; Ierapetritou, Marianthi; Ramachandran, Rohit

2013-11-01

The next generation of QbD based pharmaceutical products will be manufactured through continuous processing. This will allow the integration of online/inline monitoring tools, coupled with an efficient advanced model-based feedback control systems, to achieve precise control of process variables, so that the predefined product quality can be achieved consistently. The direct compaction process considered in this study is highly interactive and involves time delays for a number of process variables due to sensor placements, process equipment dimensions, and the flow characteristics of the solid material. A simple feedback regulatory control system (e.g., PI(D)) by itself may not be sufficient to achieve the tight process control that is mandated by regulatory authorities. The process presented herein comprises of coupled dynamics involving slow and fast responses, indicating the requirement of a hybrid control scheme such as a combined MPC-PID control scheme. In this manuscript, an efficient system-wide hybrid control strategy for an integrated continuous pharmaceutical tablet manufacturing process via direct compaction has been designed. The designed control system is a hybrid scheme of MPC-PID control. An effective controller parameter tuning strategy involving an ITAE method coupled with an optimization strategy has been used for tuning of both MPC and PID parameters. The designed hybrid control system has been implemented in a first-principles model-based flowsheet that was simulated in gPROMS (Process System Enterprise). Results demonstrate enhanced performance of critical quality attributes (CQAs) under the hybrid control scheme compared to only PID or MPC control schemes, illustrating the potential of a hybrid control scheme in improving pharmaceutical manufacturing operations. Copyright © 2013 Elsevier B.V. All rights reserved.

Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations.

PubMed

Takada, Shoji; Kanada, Ryo; Tan, Cheng; Terakawa, Tsuyoshi; Li, Wenfei; Kenzaki, Hiroo

2015-12-15

Due to hierarchic nature of biomolecular systems, their computational modeling calls for multiscale approaches, in which coarse-grained (CG) simulations are used to address long-time dynamics of large systems. Here, we review recent developments and applications of CG modeling methods, focusing on our methods primarily for proteins, DNA, and their complexes. These methods have been implemented in the CG biomolecular simulator, CafeMol. Our CG model has resolution such that ∼10 non-hydrogen atoms are grouped into one CG particle on average. For proteins, each amino acid is represented by one CG particle. For DNA, one nucleotide is simplified by three CG particles, representing sugar, phosphate, and base. The protein modeling is based on the idea that proteins have a globally funnel-like energy landscape, which is encoded in the structure-based potential energy function. We first describe two representative minimal models of proteins, called the elastic network model and the classic Go̅ model. We then present a more elaborate protein model, which extends the minimal model to incorporate sequence and context dependent local flexibility and nonlocal contacts. For DNA, we describe a model developed by de Pablo's group that was tuned to well reproduce sequence-dependent structural and thermodynamic experimental data for single- and double-stranded DNAs. Protein-DNA interactions are modeled either by the structure-based term for specific cases or by electrostatic and excluded volume terms for nonspecific cases. We also discuss the time scale mapping in CG molecular dynamics simulations. While the apparent single time step of our CGMD is about 10 times larger than that in the fully atomistic molecular dynamics for small-scale dynamics, large-scale motions can be further accelerated by two-orders of magnitude with the use of CG model and a low friction constant in Langevin dynamics. Next, we present four examples of applications. First, the classic Go̅ model was used to emulate one ATP cycle of a molecular motor, kinesin. Second, nonspecific protein-DNA binding was studied by a combination of elaborate protein and DNA models. Third, a transcription factor, p53, that contains highly fluctuating regions was simulated on two perpendicularly arranged DNA segments, addressing intersegmental transfer of p53. Fourth, we simulated structural dynamics of dinucleosomes connected by a linker DNA finding distinct types of internucleosome docking and salt-concentration-dependent compaction. Finally, we discuss many of limitations in the current approaches and future directions. Especially, more accurate electrostatic treatment and a phospholipid model that matches our CG resolutions are of immediate importance.

Compact modeling of SiC Schottky barrier diode and its extension to junction barrier Schottky diode

NASA Astrophysics Data System (ADS)

Navarro, Dondee; Herrera, Fernando; Zenitani, Hiroshi; Miura-Mattausch, Mitiko; Yorino, Naoto; Jürgen Mattausch, Hans; Takusagawa, Mamoru; Kobayashi, Jun; Hara, Masafumi

2018-04-01

A compact model applicable for both Schottky barrier diode (SBD) and junction barrier Schottky diode (JBS) structures is developed. The SBD model considers the current due to thermionic emission in the metal/semiconductor junction together with the resistance of the lightly doped drift layer. Extension of the SBD model to JBS is accomplished by modeling the distributed resistance induced by the p+ implant developed for minimizing the leakage current at reverse bias. Only the geometrical features of the p+ implant are necessary to model the distributed resistance. Reproduction of 4H-SiC SBD and JBS current-voltage characteristics with the developed compact model are validated against two-dimensional (2D) device-simulation results as well as measurements at different temperatures.

Modulation of pyridinium cationic lipid-DNA complex properties by pyridinium gemini surfactants and its impact on lipoplex transfection properties

PubMed Central

Sharma, Vishnu Dutt; Lees, Julia; Hoffman, Nicholas E.; Brailoiu, Eugen; Madesh, Muniswamy; Wunder, Stephanie L.; Ilies, Marc A.

2014-01-01

The study presents the effects of blending a cationic gemini surfactant into cationic lipid bilayers and its impact towards plasmid DNA compaction and delivery process. Using nanoDSC, dynamic light scattering, zeta potential and electrophoretic mobility measurements, together with transfection (2D- and 3D-) and viability assays, we identified the main physicochemical parameters of the lipid bilayers, liposomes and lipoplexes that are affected by the gemini surfactant addition. We also correlated the cationic bilayer composition with the dynamics of the DNA compaction process, and with transfection efficiency, cytotoxicity and internalization mechanism of the resultant nucleic acid complexes. We found that blending of gemini surfactant into the cationic bilayers fluidized the supramolecular assemblies, reduced the amount of positive charge required to fully compact the plasmid DNA and, in certain cases, changed the internalization mechanism of the lipoplexes. Transfection efficiency of select ternary lipoplexes derived from cationic gemini surfactants and lipids was several times superior to transfection efficiency of corresponding binary lipoplexes, also surpassing standard transfection systems. The overall impact of gemini surfactants into the formation and dynamic of cationic bilayers was found to depend heavily on the presence of co-lipids, their nature and amount present into lipoplexes. The study confirmed the possibility of combining the specific properties of pyridinium gemini surfactants and cationic lipids synergistically for obtaining efficient synthetic transfection systems with negligible cytotoxicity useful for therapeutic gene delivery. PMID:24377350

Long-term simulations of water and isoproturon dynamics in a heterogeneous soil receiving different urban waste composts

NASA Astrophysics Data System (ADS)

Filipović, Vilim; Coquet, Yves; Pot, Valérie; Romić, Davor; Benoit, Pierre; Houot, Sabine

2016-04-01

Implementing various compost amendments and tillage practices has a large influence on soil structure and can create heterogeneities at the plot/field scale. While tillage affects soil physical properties, compost application influences also chemical properties like pesticide sorption and degradation. A long-term field experiment called "QualiAgro" (https://www6.inra.fr/qualiagro_eng/), conducted since 1998 aims at characterizing the agronomic value of urban waste composts and their environmental impacts. A modeling study was carried out using HYDRUS-2D for the 2004-2010 period to confront the effects of two different compost types combined with the presence of heterogeneities due to tillage in terms of water and isoproturon dynamics in soil. A municipal solid waste compost (MSW) and a co-compost of sewage sludge and green wastes (SGW) have been applied to experimental plots and compared to a control plot without any compost addition (CONT). Two wick lysimeters, 5 TDR probes, and 7 tensiometers were installed per plot to monitor water and isoproturon dynamics. In the ploughed layer, four zones with differing soil structure were identified: compacted clods (Δ), non-compacted soil (Γ), interfurrows (IF), and the plough pan (PP). These different soil structural zones were implemented into HYDRUS-2D according to field observation and using measured soil hydraulic properties. Lysimeter data showed (2004 -2010 period) that the CONT plot had the largest cumulative water outflow (1388 mm) compared to the MSW plot (962 mm) and SGW plot (979 mm). HYDRUS-2D was able to describe cumulative water outflow after calibration of soil hydraulic properties, for the whole 2004-2010 period with a model efficiency value of 0.99 for all three plots. Isoproturon leaching showed had the largest cumulative value in the CONT plot (21.31 μg) while similar cumulated isoproturon leachings were measured in the SGW (0.663 μg) and MSW (0.245 μg) plots. The model was able to simulate isoproturon leaching patterns except for the large preferential flow events that were observed in the MSW and CONT plots. The timing of these preferential flow events could be reproduced by the model but not their magnitude. Additional simulations were carried out, assuming temporal variation of the IPU degradation rate to explain the leaching events observed at the end of the monitoring period (2010). Modeling results indicate that spatial and temporal variations in pesticide degradation rate due to tillage and compost application play a major role in the dynamics of isoproturon leaching. Both types of compost were found to reduce isoproturon leaching on the long-term (6 years) duration of the field experiment. Keywords: Compost amendment; Soil heterogeneity; Conventional tillage; Water flow; Isoproturon; HYDRUS-2D

A class of compact dwarf galaxies from disruptive processes in galaxy clusters.

PubMed

Drinkwater, M J; Gregg, M D; Hilker, M; Bekki, K; Couch, W J; Ferguson, H C; Jones, J B; Phillipps, S

2003-05-29

Dwarf galaxies have attracted increased attention in recent years, because of their susceptibility to galaxy transformation processes within rich galaxy clusters. Direct evidence for these processes, however, has been difficult to obtain, with a small number of diffuse light trails and intra-cluster stars being the only signs of galaxy disruption. Furthermore, our current knowledge of dwarf galaxy populations may be very incomplete, because traditional galaxy surveys are insensitive to extremely diffuse or compact galaxies. Aware of these concerns, we recently undertook an all-object survey of the Fornax galaxy cluster. This revealed a new population of compact members, overlooked in previous conventional surveys. Here we demonstrate that these 'ultra-compact' dwarf galaxies are structurally and dynamically distinct from both globular star clusters and known types of dwarf galaxy, and thus represent a new class of dwarf galaxy. Our data are consistent with the interpretation that these are the remnant nuclei of disrupted dwarf galaxies, making them an easily observed tracer of galaxy disruption.

Determining the compactive effort required to model pavement voids using the Corps of Engineers gyratory testing machine.

DOT National Transportation Integrated Search

1997-11-01

Various agencies have used the Corps of Engineers gyratory testing machine (GTM) to design and test asphalt mixes. Materials properties such as shear strength and strain are measured during the compaction process. However, a compaction process duplic...

Studying Variance in the Galactic Ultra-compact Binary Population

NASA Astrophysics Data System (ADS)

Larson, Shane L.; Breivik, Katelyn

2017-01-01

In the years preceding LISA, Milky Way compact binary population simulations can be used to inform the science capabilities of the mission. Galactic population simulation efforts generally focus on high fidelity models that require extensive computational power to produce a single simulated population for each model. Each simulated population represents an incomplete sample of the functions governing compact binary evolution, thus introducing variance from one simulation to another. We present a rapid Monte Carlo population simulation technique that can simulate thousands of populations on week-long timescales, thus allowing a full exploration of the variance associated with a binary stellar evolution model.

FEM simulation of the die compaction of pharmaceutical products: influence of visco-elastic phenomena and comparison with experiments.

PubMed

Diarra, Harona; Mazel, Vincent; Busignies, Virginie; Tchoreloff, Pierre

2013-09-10

This work studies the influence of visco-elastic behavior in the finite element method (FEM) modeling of die compaction of pharmaceutical products and how such a visco-elastic behavior may improve the agreement between experimental and simulated compression curves. The modeling of the process was conducted on a pharmaceutical excipient, microcrystalline cellulose (MCC), by using Drucker-Prager cap model coupled with creep behavior in Abaqus(®) software. The experimental data were obtained on a compaction simulator (STYLCAM 200R). The elastic deformation of the press was determined by performing experimental tests on a calibration disk and was introduced in the simulation. Numerical optimization was performed to characterize creep parameters. The use of creep behavior in the simulations clearly improved the agreement between the numerical and experimental compression curves (stresses, thickness), mainly during the unloading part of the compaction cycle. For the first time, it was possible to reproduce numerically the fact that the minimum tablet thickness is not obtained at the maximum compression stress. This study proves that creep behavior must be taken into account when modeling the compaction of pharmaceutical products using FEM methods. Copyright © 2013 Elsevier B.V. All rights reserved.

Reduced native state stability in crowded cellular environment due to protein-protein interactions.

PubMed

Harada, Ryuhei; Tochio, Naoya; Kigawa, Takanori; Sugita, Yuji; Feig, Michael

2013-03-06

The effect of cellular crowding environments on protein structure and stability is a key issue in molecular and cellular biology. The classical view of crowding emphasizes the volume exclusion effect that generally favors compact, native states. Here, results from molecular dynamics simulations and NMR experiments show that protein crowders may destabilize native states via protein-protein interactions. In the model system considered here, mixtures of villin head piece and protein G at high concentrations, villin structures become increasingly destabilized upon increasing crowder concentrations. The denatured states observed in the simulation involve partial unfolding as well as more subtle conformational shifts. The unfolded states remain overall compact and only partially overlap with unfolded ensembles at high temperature and in the presence of urea. NMR measurements on the same systems confirm structural changes upon crowding based on changes of chemical shifts relative to dilute conditions. An analysis of protein-protein interactions and energetic aspects suggests the importance of enthalpic and solvation contributions to the crowding free energies that challenge an entropic-centered view of crowding effects.

La Freccia Rossa: An IR-dark cloud hosting the Milky Way intermediate-mass black hole candidate

NASA Astrophysics Data System (ADS)

Ravi, Vikram; Vedantham, Harish; Phinney, E. Sterl

2018-05-01

The dynamics of the high-velocity compact molecular cloud CO-0.40-0.22 have been interpreted as evidence for a ˜105M⊙ black hole within 60 pc of Sgr A*. Recently, Oka et al. have identified a compact millimetre-continuum source, CO-0.40-0.22*, with this candidate black hole. Here we present a collation of radio and infrared data at this location. ATCA constraints on the radio spectrum, and the detection of a mid-infrared counterpart, are in tension with an Sgr A*-like model for CO-0.40-0.22* despite the comparable bolometric to Eddington luminosity ratios under the IMBH interpretation. A protostellar-disk scenario is, however, tenable. CO-0.40-0.22(*) is positionally coincident with an arrowhead-shaped infrared-dark cloud (which we call the Freccia Rossa). If the VLSR ≈ 70 km s-1 systemic velocity of CO-0.40-0.22 is common to the entire Freccia Rossa system, we hypothesise that it is the remnant of a high-velocity cloud that has plunged into the Milky Way from the Galactic halo.

Compact normalisations in the elliptic restricted three body problem

NASA Astrophysics Data System (ADS)

Palacián, Jesús F.; Vanegas, Jasson; Yanguas, Patricia

2017-11-01

This paper considers the spatial elliptic restricted three body problem in the case that the particle with negligible mass is revolving around one of the primaries. The system is modelled in an inertial frame through a Hamiltonian function representing a non-autonomous dynamical system with three degrees of freedom that depends periodically on time. Three Lie transformations are applied at first order to eliminate successively the mean anomaly of the infinitesimal particle's motion, the time dependence of the system and the argument of the node of the particle with negligible mass. All the transformations are implemented in a compact way, that is, carrying out the computations by means of infinite series. This approach can be very useful to deal with certain artificial satellite problems or, in general, with systems such that the ratio between the distance of the infinitesimal particle to the body around it orbits and the distance between the two primaries is smaller than one but close to it. In this case the Legendre expansion of the potential converges slowly and many terms of the series must be taken into consideration.

Microwave Radiometers from 0.6 to 22 GHz for Juno, A Polar Orbiter Around Jupiter

NASA Technical Reports Server (NTRS)

Pingree, P.; Janssen, M.; Oswald, J.; Brown, S.; Chen, J.; Hurst, K.; Kitiyakara, A.; Maiwald, F.; Smith, S.

2008-01-01

A compact instrument called the MWR (MicroWave Radiometer) is under development at JPL for Juno, the next NASA New Frontiers mission, scheduled to launch in 2011. It's purpose is to measure the thermal emission from Jupiter's atmosphere at six selected frequencies from 0.6 to 22 GHz, operating in direct detection mode, in order to quantify the distributions and abundances of water and ammonia in Jupiter's atmosphere. The goal is to understand the previously unobserved dynamics of the sub-cloud atmosphere, and to discriminate among models for planetary formation in our solar system. As part of a deep space mission aboard a solar-powered spacecraft, MWR is designed to be compact, lightweight, and low power. The receivers and control electronics are protected by a radiation-shielding enclosure on the Juno spacecraft that would provide a benign and stable operating temperature environment. All antennas and RF transmission lines outside the vault must withstand low temperatures and the harsh radiation environment surrounding Jupiter. This paper describes the concept of the MWR instrument and presents results of one breadboard receiver channel.

Microwave Radiometers from 0.6 to 22 GHz for Juno, a Polar Orbiter around Jupiter

NASA Technical Reports Server (NTRS)

Pingree, Paula J.; Janssen, M.; Oswald, J.; Brown, S.; Chen, J.; Hurst, K.; Kitiyakara, A.; Maiwald, F.; Smith, S.

2008-01-01

A compact instrument called the MWR (microwave radiometer) is under development at JPL for Juno, the next NASA new frontiers mission, scheduled to launch in 2011. It's purpose is to measure the thermal emission from Jupiter's atmosphere at six selected frequencies from 0.6 to 22 GHz, operating in direct detection mode, in order to quantify the distributions and abundances of water and ammonia in Jupiter's atmosphere. The goal is to understand the previously unobserved dynamics of the sub-cloud atmosphere, and to discriminate among models for planetary formation in our solar system. as part of a deep space mission aboard a solar-powered spacecraft, MWR is designed to be compact, lightweight, and low power. The receivers and control electronics are protected by a radiation-shielding enclosure on the Juno spacecraft that also provides for a benign and stable operating temperature environment. All antennas and RF transmission lines outside the vault must withstand low temperatures and the harsh radiation environment surrounding Jupiter. This paper describes the concept of the MWR instrument and presents results of one breadboard receiver channel.

Length scale effects of friction in particle compaction using atomistic simulations and a friction scaling model

NASA Astrophysics Data System (ADS)

Stone, T. W.; Horstemeyer, M. F.

2012-09-01

The objective of this study is to illustrate and quantify the length scale effects related to interparticle friction under compaction. Previous studies have shown as the length scale of a specimen decreases, the strength of a single crystal metal or ceramic increases. The question underlying this research effort continues the thought—If there is a length scale parameter related to the strength of a material, is there a length scale parameter related to friction? To explore the length scale effects of friction, molecular dynamics (MD) simulations using an embedded atom method potential were performed to analyze the compression of two spherical FCC nickel nanoparticles at different contact angles. In the MD model study, we applied a macroscopic plastic contact formulation to determine the normal plastic contact force at the particle interfaces and used the average shear stress from the MD simulations to determine the tangential contact forces. Combining this information with the Coulomb friction law, we quantified the MD interparticle coefficient of friction and showed good agreement with experimental studies and a Discrete Element Method prediction as a function of contact angle. Lastly, we compared our MD simulation friction values to the tribological predictions of Bhushan and Nosonovsky (BN), who developed a friction scaling model based on strain gradient plasticity and dislocation-assisted sliding that included a length scale parameter. The comparison revealed that the BN elastic friction scaling model did a much better job than the BN plastic scaling model of predicting the coefficient of friction values obtained from the MD simulations.

Distributed support modelling for vertical track dynamic analysis

NASA Astrophysics Data System (ADS)

Blanco, B.; Alonso, A.; Kari, L.; Gil-Negrete, N.; Giménez, J. G.

2018-04-01

The finite length nature of rail-pad supports is characterised by a Timoshenko beam element formulation over an elastic foundation, giving rise to the distributed support element. The new element is integrated into a vertical track model, which is solved in frequency and time domain. The developed formulation is obtained by solving the governing equations of a Timoshenko beam for this particular case. The interaction between sleeper and rail via the elastic connection is considered in an analytical, compact and efficient way. The modelling technique results in realistic amplitudes of the 'pinned-pinned' vibration mode and, additionally, it leads to a smooth evolution of the contact force temporal response and to reduced amplitudes of the rail vertical oscillation, as compared to the results from concentrated support models. Simulations are performed for both parametric and sinusoidal roughness excitation. The model of support proposed here is compared with a previous finite length model developed by other authors, coming to the conclusion that the proposed model gives accurate results at a reduced computational cost.

Studying the compactibility of the VT22 high-strength alloy powder obtained by the PREP method

NASA Astrophysics Data System (ADS)

Kryuchkov, D. I.; Berezin, I. M.; Nesterenko, A. V.; Zalazinsky, A. G.; Vichuzhanin, D. I.

2017-12-01

Compression curves are plotted for VT22 high-strength alloy powder under conditions of uniaxial compression at room temperature. The density of the compacted briquette at the loading and unloading stages is determined. It is demonstrated that strong interparticle bonds are formed in the area of the action of shear deformation. The results are supposed to be used to identify the flow model of the material studied and to perform the subsequent numerical modeling of the compaction process.

Simulation of roller compaction with subsequent tableting and characterization of lactose and microcrystalline cellulose.

PubMed

Hein, Stephanie; Picker-Freyer, Katharina M; Langridge, John

2008-01-01

Tablets are by far the most common solid oral dosage forms, and many drugs need to be granulated before they can be tableted. Increasingly roller compaction is being used as a dry granulation technique; however it is a very time and material intensive method. Thus some mini roller compactors and simulations of the roller compaction process have been developed as a means of studying the technique at small scale. An important factor in the selection of materials for roller compaction is their ability to be recompressed into tablets after the initial roller compaction and milling steps. In this paper the roller compaction process was simulated on the basis of some models by Gereg and Cappola (2002) and Zinchuk et al. (2004). An eccentric tableting machine was used to make compacts from alpha-lactose monohydrate, anhydrous beta-lactose, spray-dried lactose and microcrystalline cellulose at different maximum relative densities (rho rel,max 0.6-0.9). These compacts were milled immediately to granules with a rotary granulator. The properties of the granules were analyzed and compared to the properties of the original powders. These granules and powders were then tableted at different maximum relative densities (rho rel,max 0.75-0.95) and their properties including elastic recovery, crushing force and 3D-model were analyzed. The properties of the tablets made from the granules were compared to the properties of the tablets made from the powders to determine which excipients are most suitable for the roller compaction process. The study showed that anhydrous beta-lactose is the preferred form of lactose for use in roller compaction since compaction did not affect tablet crushing force to a large extent. With the simulation of roller compaction process one is able to find qualified materials for use in roller compaction without the necessity of a great deal of material and time.

Distribution of compact object mergers around galaxies

NASA Astrophysics Data System (ADS)

Bulik, T.; Belczyński, K.; Zbijewski, W.

1999-09-01

Compact object mergers are one of the favoured models of gamma ray bursts (GRB). Using a binary population synthesis code we calculate properties of the population of compact object binaries; e.g. lifetimes and velocities. We then propagate them in galactic potentials and find their distribution in relation to the host.

Design and evaluation of a miniature laser speckle imaging device to assess gingival health

PubMed Central

Regan, Caitlin; White, Sean M.; Yang, Bruce Y.; Takesh, Thair; Ho, Jessica; Wink, Cherie; Wilder-Smith, Petra; Choi, Bernard

2016-01-01

Abstract. Current methods used to assess gingivitis are qualitative and subjective. We hypothesized that gingival perfusion measurements could provide a quantitative metric of disease severity. We constructed a compact laser speckle imaging (LSI) system that could be mounted in custom-made oral molds. Rigid fixation of the LSI system in the oral cavity enabled measurement of blood flow in the gingiva. In vitro validation performed in controlled flow phantoms demonstrated that the compact LSI system had comparable accuracy and linearity compared to a conventional bench-top LSI setup. In vivo validation demonstrated that the compact LSI system was capable of measuring expected blood flow dynamics during a standard postocclusive reactive hyperemia and that the compact LSI system could be used to measure gingival blood flow repeatedly without significant variation in measured blood flow values (p<0.05). Finally, compact LSI system measurements were collected from the interdental papilla of nine subjects and compared to a clinical assessment of gingival bleeding on probing. A statistically significant correlation (ρ=0.53; p<0.005) was found between these variables, indicating that quantitative gingival perfusion measurements performed using our system may aid in the diagnosis and prognosis of periodontal disease. PMID:27787545

Design and evaluation of a miniature laser speckle imaging device to assess gingival health

NASA Astrophysics Data System (ADS)

Regan, Caitlin; White, Sean M.; Yang, Bruce Y.; Takesh, Thair; Ho, Jessica; Wink, Cherie; Wilder-Smith, Petra; Choi, Bernard

2016-10-01

Current methods used to assess gingivitis are qualitative and subjective. We hypothesized that gingival perfusion measurements could provide a quantitative metric of disease severity. We constructed a compact laser speckle imaging (LSI) system that could be mounted in custom-made oral molds. Rigid fixation of the LSI system in the oral cavity enabled measurement of blood flow in the gingiva. In vitro validation performed in controlled flow phantoms demonstrated that the compact LSI system had comparable accuracy and linearity compared to a conventional bench-top LSI setup. In vivo validation demonstrated that the compact LSI system was capable of measuring expected blood flow dynamics during a standard postocclusive reactive hyperemia and that the compact LSI system could be used to measure gingival blood flow repeatedly without significant variation in measured blood flow values (p<0.05). Finally, compact LSI system measurements were collected from the interdental papilla of nine subjects and compared to a clinical assessment of gingival bleeding on probing. A statistically significant correlation (ρ=0.53 p<0.005) was found between these variables, indicating that quantitative gingival perfusion measurements performed using our system may aid in the diagnosis and prognosis of periodontal disease.

A compact design for the Josephson mixer: The lumped element circuit

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pillet, J.-D.; Collège de France, 11 place Marcelin Berthelot, 75005 Paris; Flurin, E.

2015-06-01

We present a compact and efficient design in terms of gain, bandwidth, and dynamical range for the Josephson mixer, the superconducting circuit performing three-wave mixing at microwave frequencies. In an all lumped-element based circuit with galvanically coupled ports, we demonstrate nondegenerate amplification for microwave signals over a bandwidth up to 50 MHz for a power gain of 20 dB. The quantum efficiency of the mixer is shown to be about 70%, and its saturation power reaches −112 dBm.

A numerical study of the 2- and 3-dimensional unsteady Navier-Stokes equations in velocity-vorticity variables using compact difference schemes

NASA Technical Reports Server (NTRS)

Gatski, T. B.; Grosch, C. E.

1984-01-01

A compact finite-difference approximation to the unsteady Navier-Stokes equations in velocity-vorticity variables is used to numerically simulate a number of flows. These include two-dimensional laminar flow of a vortex evolving over a flat plate with an embedded cavity, the unsteady flow over an elliptic cylinder, and aspects of the transient dynamics of the flow over a rearward facing step. The methodology required to extend the two-dimensional formulation to three-dimensions is presented.

A Compact 600 GHz Electronically Tunable Vector Measurement System for Submillimeter Wave Imaging

NASA Technical Reports Server (NTRS)

Dengler, Robert J.; Maiwald, Frank; Siegel, Peter H.

2006-01-01

A compact submillimeter wave transmission / reflection measurement system has been demonstrated at 560-635 GHz, with electronic tuning over the entire band. Maximum dynamic range measured at a single frequency is 90 dB (60 dB typical), and phase noise is less than +/- 2(deg). By using a frequency steerable lens at the source output and mixer input, the frequency agility of the system can be used to scan the source and receive beams, resulting in near real-time imaging capability using only a single pixel.

Models of compacted fine-grained soils used as mineral liner for solid waste

NASA Astrophysics Data System (ADS)

Sivrikaya, Osman

2008-02-01

To prevent the leakage of pollutant liquids into groundwater and sublayers, the compacted fine-grained soils are commonly utilized as mineral liners or a sealing system constructed under municipal solid waste and other containment hazardous materials. This study presents the correlation equations of the compaction parameters required for construction of a mineral liner system. The determination of the characteristic compaction parameters, maximum dry unit weight ( γ dmax) and optimum water content ( w opt) requires considerable time and great effort. In this study, empirical models are described and examined to find which of the index properties correlate well with the compaction characteristics for estimating γ dmax and w opt of fine-grained soils at the standard compactive effort. The compaction data are correlated with different combinations of gravel content ( G), sand content ( S), fine-grained content (FC = clay + silt), plasticity index ( I p), liquid limit ( w L) and plastic limit ( w P) by performing multilinear regression (MLR) analyses. The obtained correlations with statistical parameters are presented and compared with the previous studies. It is found that the maximum dry unit weight and optimum water content have a considerably good correlation with plastic limit in comparison with liquid limit and plasticity index.

Hydrologic and geologic factors affecting land subsidence near Eloy, Arizona

USGS Publications Warehouse

Epstein, V.J.

1987-01-01

At an extensometer site near Eloy, Arizona, 1.09 m of land subsidence caused by groundwater withdrawal were measured by leveling in 1965-83. The extensometer, which partially penetrates the compressible sediments, recorded 0.82 m of compaction during the same period. By use of a one-dimensional model, cumulative daily compaction values were simulated to within an average of 0.0038 m of the actual values. Land subsidence was simulated to within an average of 0.011 m using the same model in conjunction with geohydrologic data of the sediments below the extensometer. A highly compressible clay layer that is 24.38 m thick was partially penetrated by the extensometer. The simulation indicated that the layer was driving compaction and land subsidence linearly with respect to time, despite the presence of other compacting layers. Because of its thickness and compressibility, this layer can be expected to continue to compact after applied vertical stresses have stopped increasing and other layers have stopped compacting. Sensitivity analysis indicated that the compressibility of fine-grained sediments (expressed as specific storage) is one of the factors to which compact is most sensitive. Preconsolidation stress and hydraulic conductivity also affect land subsidence near Eloy, Arizona. (Author 's abstract)

The continuum limit of aN-1(2) spin chains

NASA Astrophysics Data System (ADS)

Vernier, Eric; Jacobsen, Jesper Lykke; Saleur, Hubert

2016-10-01

Building on our previous work for a2(2) and a3(2) we explore systematically the continuum limit of gapless aN-1(2) vertex models and spin chains. We find the existence of three possible regimes. Regimes I and II for a2n-1(2) are related with a2n-1(2) Toda, and described by n compact bosons. Regime I for a2n(2) is related with a2n(2) Toda and involves n compact bosons, while regime II is related instead with B(1) (0 , n) super Toda, and involves in addition a single Majorana fermion. The most interesting is regime III, where non-compact degrees of freedom appear, generalising the emergence of the Euclidean black hole CFT in the a2(2) case. For a2n(2) we find a continuum limit made of n compact and n non-compact bosons, while for a2n-1(2) we find n compact and n - 1 non-compact bosons. We also find deep relations between aN-1(2) in regime III and the gauged WZW models SO (N) / SO (N - 1).

An approach for modeling the influence of wheel tractor loads and vibration frequencies on soil compaction

NASA Astrophysics Data System (ADS)

Verotti, M.; Servadio, P.; Belfiore, N. P.; Bergonzoli, S.

2012-04-01

Both soil compaction and ground vibration are forms of environmental degradation that may be understood in the context of the vehicle-soil interaction process considered (Hildebrand et al., 2008). The transit of tractors on agricultural soil is often the main cause of soil compaction increasing. As known, this can be a serious problems for tillage and sowing and therefore the influence of all the affecting factors have been extensively studied in the last decades in order to understand their impact on the biosystem. There are factors related to the climate, namely to the rainfalls and temperature, and many others. Hence, it is not simple to figure out a complete model for predicting an index of compaction, for a given situation. Soil compaction models are important tools for controlling soil compaction due to agricultural field traffic and they are potentially useful technique to provide information concerning correct soil management. By means of such models, strategies and recommendations for prevention of soil compaction may be developed and specific advice may be given to farmers and advisers. In order to predict field wheeled and tracked vehicle performance, some empirical methods, used for off-road vehicle, were applied by Servadio (2010) on agricultural soil. The empirical indexes included, besides the soil strength, the load carried by the tire or track, some technical characteristics of the tire or track of the vehicle (tire or track width, tire or track wheel diameter, unloaded tire section height, number of wheel station in one track, tire deflection, total length of the belt track, the track pitch) as well as the vehicle passes. They have been validated with the tests results of agricultural vehicles over a range of soil in central Italy. Among the parameters which affect soil compaction, the water content of the soil, the axle load and number of vehicle passes proved to be the most important ones. The present paper concerns mainly vehicle-soil-man interaction. In particular, a model based on elasto-visco-plastic concentrated parameters, with multiple degrees of freedom, will be used in order to build a method for detecting a soil damage index, especially expressed in terms of increasing of soil compaction. Besides the axle load, the model will take into account the frequency of the vibrations that the vehicle is transmitting to the soil. Such model expresses a numerical value for the transmissibility coefficient and also allows evaluating the damage at the surface and on the bulk medium where the agricultural crops initially develop. Key words: vehicle-soil interaction, vibration, compaction, models. Acknowledgements This work was carried out under the auspices of the special project "Sceneries of adaptation of the Italian agriculture to the climatic changes" (AGROSCENARI) of the Agricultural Research Council, and Italian Ministry of the Agricultural and Forestry Politics.

Local-area simulations of rotating compressible convection and associated mean flows

NASA Technical Reports Server (NTRS)

Hurlburt, Neal E.; Brummell, N. H.; Toomre, Juri

1995-01-01

The dynamics of compressible convection within a curved local segment of a rotating spherical shell are considered in relation to the turbulent redistribution of angular momentum within the solar convection zone. Current supercomputers permit fully turbulent flows to be considered within the restricted geometry of local area models. By considering motions in a curvilinear geometry in which the Coriolos parameters vary with latitude, Rossby waves which couple with the turbulent convection are thought of as being possible. Simulations of rotating convection are presented in such a curved local segment of a spherical shell using a newly developed, sixth-order accurate code based on compact finite differences.

Fabry-Perot confocal resonator optical associative memory

NASA Astrophysics Data System (ADS)

Burns, Thomas J.; Rogers, Steven K.; Vogel, George A.

1993-03-01

A unique optical associative memory architecture is presented that combines the optical processing environment of a Fabry-Perot confocal resonator with the dynamic storage and recall properties of volume holograms. The confocal resonator reduces the size and complexity of previous associative memory architectures by folding a large number of discrete optical components into an integrated, compact optical processing environment. Experimental results demonstrate the system is capable of recalling a complete object from memory when presented with partial information about the object. A Fourier optics model of the system's operation shows it implements a spatially continuous version of a discrete, binary Hopfield neural network associative memory.

Design of a Parachute Canopy Instrumentation Platform

NASA Technical Reports Server (NTRS)

Alshahin, Wahab M.; Daum, Jared S.; Holley, James J.; Litteken, Douglas A.; Vandewalle, Michael T.

2015-01-01

This paper discusses the current technology available to design and develop a reliable and compact instrumentation platform for parachute system data collection and command actuation. Wireless communication with a parachute canopy will be an advancement to the state of the art of parachute design, development, and testing. Embedded instrumentation of the parachute canopy will provide reefing line tension, skirt position data, parachute health monitoring, and other telemetry, further validating computer models and giving engineering insight into parachute dynamics for both Earth and Mars entry that is currently unavailable. This will allow for more robust designs which are more optimally designed in terms of structural loading, less susceptible to adverse dynamics, and may eventually pave the way to currently unattainable advanced concepts of operations. The development of this technology has dual use potential for a variety of other applications including inflatable habitats, aerodynamic decelerators, heat shields, and other high stress environments.

Dynamical Constraints on Non-Transiting Planets at Trappist-1

NASA Astrophysics Data System (ADS)

Jontof-Hutter, Daniel; Truong, Vinh; Ford, Eric; Robertson, Paul; Terrien, Ryan

2018-04-01

The outermost of the seven known planets of Trappist-1 orbits six times closer to its host star than Mercury orbits the sun. The architecture of this system beyond 0.07 AU remains unknown. While the presence of additional planets will ultimately be determined by observations, in the meantime, some constraints can be derived from dynamical models.We will firstly look at the expected signature of additional planets at Trappist-1 on the transit times of the known planets to determine at what distances putatuve planets can be ruled out.Secondly, the remarkably compact configuration of Trappist-1 ensures that the known planets are secularly coupled, keeping their mutual inclinations very small and making their cotransiting geometry likely if Trappist-1h transits. We determine the range of masses and orbital inclinations of a putatuve outer planet that would make the observed configuration unlikely, and compare these to these constraints to those expected from radial velocity observations.

Spin dynamics of close-in planets exhibiting large transit timing variations

NASA Astrophysics Data System (ADS)

Delisle, J.-B.; Correia, A. C. M.; Leleu, A.; Robutel, P.

2017-09-01

We study the spin evolution of close-in planets in compact multi-planetary systems. The rotation period of these planets is often assumed to be synchronous with the orbital period due to tidal dissipation. Here we show that planet-planet perturbations can drive the spin of these planets into non-synchronous or even chaotic states. In particular, we show that the transit timing variation (TTV) is a very good probe to study the spin dynamics, since both are dominated by the perturbations of the mean longitude of the planet. We apply our model to KOI-227 b and Kepler-88 b, which are both observed undergoing strong TTVs. We also perform numerical simulations of the spin evolution of these two planets. We show that for KOI-227 b non-synchronous rotation is possible, while for Kepler-88 b the rotation can be chaotic.

Pattern Selection and Super-Patterns in Opinion Dynamics

NASA Astrophysics Data System (ADS)

Ben-Naim, Eli; Scheel, Arnd

We study pattern formation in the bounded confidence model of opinion dynamics. In this random process, opinion is quantified by a single variable. Two agents may interact and reach a fair compromise, but only if their difference of opinion falls below a fixed threshold. Starting from a uniform distribution of opinions with compact support, a traveling wave forms and it propagates from the domain boundary into the unstable uniform state. Consequently, the system reaches a steady state with isolated clusters that are separated by distance larger than the interaction range. These clusters form a quasi-periodic pattern where the sizes of the clusters and the separations between them are nearly constant. We obtain analytically the average separation between clusters L. Interestingly, there are also very small quasi-periodic modulations in the size of the clusters. The spatial periods of these modulations are a series of integers that follow from the continued-fraction representation of the irrational average separation L.

A molecular mechanism of chaperone-client recognition

PubMed Central

He, Lichun; Sharpe, Timothy; Mazur, Adam; Hiller, Sebastian

2016-01-01

Molecular chaperones are essential in aiding client proteins to fold into their native structure and in maintaining cellular protein homeostasis. However, mechanistic aspects of chaperone function are still not well understood at the atomic level. We use nuclear magnetic resonance spectroscopy to elucidate the mechanism underlying client recognition by the adenosine triphosphate-independent chaperone Spy at the atomic level and derive a structural model for the chaperone-client complex. Spy interacts with its partially folded client Im7 by selective recognition of flexible, locally frustrated regions in a dynamic fashion. The interaction with Spy destabilizes a partially folded client but spatially compacts an unfolded client conformational ensemble. By increasing client backbone dynamics, the chaperone facilitates the search for the native structure. A comparison of the interaction of Im7 with two other chaperones suggests that the underlying principle of recognizing frustrated segments is of a fundamental nature. PMID:28138538

Checking the compatibility of the cold Kuiper belt with a planetary instability migration model

NASA Astrophysics Data System (ADS)

Gomes, Rodney; Nesvorný, David; Morbidelli, Alessandro; Deienno, Rogerio; Nogueira, Erica

2018-05-01

The origin of the orbital structure of the cold component of the Kuiper belt is still a hot subject of investigation. Several features of the solar system suggest that the giant planets underwent a phase of global dynamical instability, but the actual dynamical evolution of the planets during the instability is still debated. To explain the structure of the cold Kuiper belt, Nesvorny (2015, AJ 150,68) argued for a "soft" instability, during which Neptune never achieved a very eccentric orbit. Here we investigate the possibility of a more violent instability, from an initially more compact fully resonant configuration of 5 giant planets. We show that the orbital structure of the cold Kuiper belt can be reproduced quite well provided that the cold population formed in situ, with an outer edge between 44 - 45 au and never had a large mass.

Justification of parameters and selection of equipment for laboratory researches of a rammer's operating element dynamics in a soil foundation of a tank for oil and oil products storage

NASA Astrophysics Data System (ADS)

Gruzin, A. V.; Gruzin, V. V.; Shalay, V. V.

2017-08-01

The development of technology for a directional soil compaction of tank foundations for oil and oil products storage is a relevant problem which solution will enable simultaneously provide required operational characteristics of a soil foundation and reduce time and material costs to prepare the foundation. The impact dynamics of rammers' operating elements on the soil foundation is planned to specify in the course of laboratory studies. A specialized technique is developed to justify the parameters and select the equipment for laboratory researches. The usage of this technique enabled us to calculate dimensions of the models, of a test bench and specifications of the recording equipment, and a lighting system. The necessary equipment for laboratory studies was selected. Preliminary laboratory tests were carried out. The estimate of accuracy for planned laboratory studies was given.

Design and dynamic analysis of a piezoelectric linear stage for pipetting liquid samples

NASA Astrophysics Data System (ADS)

Yu-Jen, Wang; Chien, Lee; Yi-Bin, Jiang; Kuo-Chieh, Fu

2017-06-01

Piezoelectric actuators have been widely used in positioning stages because of their compact size, stepping controllability, and holding force. This study proposes a piezoelectric-driven stage composed of a bi-electrode piezoelectric slab, capacitive position sensor, and capillary filling detector for filling liquid samples into nanopipettes using capillary flow. This automatic sample-filling device is suitable for transmission electron microscopy image-based quantitative analysis of aqueous products with added nanoparticles. The step length of the actuator is adjusted by a pulse width modulation signal that depends on the stage position; the actuator stops moving once the capillary filling has been detected. A novel dynamic model of the piezoelectric-driven stage based on collision interactions between the piezoelectric actuator and the sliding clipper is presented. Unknown model parameters are derived from the steady state solution of the equivalent steady phase angle. The output force of the piezoelectric actuator is formulated using the impulse and momentum principle. Considering the applied forces and related velocity between the sliding clipper and the piezoelectric slab, the stage dynamic response is confirmed with the experimental results. Moreover, the model can be used to explain the in-phase slanted trajectories of piezoelectric slab to drive sliders, but not elliptical trajectories. The maximum velocity and minimum step length of the piezoelectric-driven stage are 130 mm s-1 and 1 μm respectively.

Evaluation of vibration limits and mitigation techniques for urban construction : [summary].

DOT National Transportation Integrated Search

2013-10-01

Construction activities such as pile driving and : dynamic compaction of loose soils induce ground : and structure vibrations. Their effects may annoy : local populations, disturb sensitive equipment, or : reduce structures serviceability and dura...

Water Dynamics at Protein-Protein Interfaces: Molecular Dynamics Study of Virus-Host Receptor Complexes.

PubMed

Dutta, Priyanka; Botlani, Mohsen; Varma, Sameer

2014-12-26

The dynamical properties of water at protein-water interfaces are unlike those in the bulk. Here we utilize molecular dynamics simulations to study water dynamics in interstitial regions between two proteins. We consider two natural protein-protein complexes, one in which the Nipah virus G protein binds to cellular ephrin B2 and the other in which the same G protein binds to ephrin B3. While the two complexes are structurally similar, the two ephrins share only a modest sequence identity of ∼50%. X-ray crystallography also suggests that these interfaces are fairly extensive and contain exceptionally large amounts of waters. We find that while the interstitial waters tend to occupy crystallographic sites, almost all waters exhibit residence times of less than hundred picoseconds in the interstitial region. We also find that while the differences in the sequence of the two ephrins result in quantitative differences in the dynamics of interstitial waters, the trends in the shifts with respect to bulk values are similar. Despite the high wetness of the protein-protein interfaces, the dynamics of interstitial waters are considerably slower compared to the bulk-the interstitial waters diffuse an order of magnitude slower and have 2-3 fold longer hydrogen bond lifetimes and 2-1000 fold slower dipole relaxation rates. To understand the role of interstitial waters, we examine how implicit solvent models compare against explicit solvent models in producing ephrin-induced shifts in the G conformational density. Ephrin-induced shifts in the G conformational density are critical to the allosteric activation of another viral protein that mediates fusion. We find that in comparison with the explicit solvent model, the implicit solvent model predicts a more compact G-B2 interface, presumably because of the absence of discrete waters at the G-B2 interface. Simultaneously, we find that the two models yield strikingly different induced changes in the G conformational density, even for those residues whose conformational densities in the apo state are unaffected by the treatment of the bulk solvent. Together, these results show that the explicit treatment of interstitial water molecules is necessary for a proper description of allosteric transitions.

Experimentally validated computational modeling of organic binder burnout from green ceramic compacts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ewsuk, K.G.; Cochran, R.J.; Blackwell, B.F.

The properties and performance of a ceramic component is determined by a combination of the materials from which it was fabricated and how it was processed. Most ceramic components are manufactured by dry pressing a powder/binder system in which the organic binder provides formability and green compact strength. A key step in this manufacturing process is the removal of the binder from the powder compact after pressing. The organic binder is typically removed by a thermal decomposition process in which heating rate, temperature, and time are the key process parameters. Empirical approaches are generally used to design the burnout time-temperaturemore » cycle, often resulting in excessive processing times and energy usage, and higher overall manufacturing costs. Ideally, binder burnout should be completed as quickly as possible without damaging the compact, while using a minimum of energy. Process and computational modeling offer one means to achieve this end. The objective of this study is to develop an experimentally validated computer model that can be used to better understand, control, and optimize binder burnout from green ceramic compacts.« less

Recent advances in symmetric and network dynamics

NASA Astrophysics Data System (ADS)

Golubitsky, Martin; Stewart, Ian

2015-09-01

We summarize some of the main results discovered over the past three decades concerning symmetric dynamical systems and networks of dynamical systems, with a focus on pattern formation. In both of these contexts, extra constraints on the dynamical system are imposed, and the generic phenomena can change. The main areas discussed are time-periodic states, mode interactions, and non-compact symmetry groups such as the Euclidean group. We consider both dynamics and bifurcations. We summarize applications of these ideas to pattern formation in a variety of physical and biological systems, and explain how the methods were motivated by transferring to new contexts René Thom's general viewpoint, one version of which became known as "catastrophe theory." We emphasize the role of symmetry-breaking in the creation of patterns. Topics include equivariant Hopf bifurcation, which gives conditions for a periodic state to bifurcate from an equilibrium, and the H/K theorem, which classifies the pairs of setwise and pointwise symmetries of periodic states in equivariant dynamics. We discuss mode interactions, which organize multiple bifurcations into a single degenerate bifurcation, and systems with non-compact symmetry groups, where new technical issues arise. We transfer many of the ideas to the context of networks of coupled dynamical systems, and interpret synchrony and phase relations in network dynamics as a type of pattern, in which space is discretized into finitely many nodes, while time remains continuous. We also describe a variety of applications including animal locomotion, Couette-Taylor flow, flames, the Belousov-Zhabotinskii reaction, binocular rivalry, and a nonlinear filter based on anomalous growth rates for the amplitude of periodic oscillations in a feed-forward network.

Representation of deformable motion for compression of dynamic cardiac image data

NASA Astrophysics Data System (ADS)

Weinlich, Andreas; Amon, Peter; Hutter, Andreas; Kaup, André

2012-02-01

We present a new approach for efficient estimation and storage of tissue deformation in dynamic medical image data like 3-D+t computed tomography reconstructions of human heart acquisitions. Tissue deformation between two points in time can be described by means of a displacement vector field indicating for each voxel of a slice, from which position in the previous slice at a fixed position in the third dimension it has moved to this position. Our deformation model represents the motion in a compact manner using a down-sampled potential function of the displacement vector field. This function is obtained by a Gauss-Newton minimization of the estimation error image, i. e., the difference between the current and the deformed previous slice. For lossless or lossy compression of volume slices, the potential function and the error image can afterwards be coded separately. By assuming deformations instead of translational motion, a subsequent coding algorithm using this method will achieve better compression ratios for medical volume data than with conventional block-based motion compensation known from video coding. Due to the smooth prediction without block artifacts, particularly whole-image transforms like wavelet decomposition as well as intra-slice prediction methods can benefit from this approach. We show that with discrete cosine as well as with Karhunen-Lo`eve transform the method can achieve a better energy compaction of the error image than block-based motion compensation while reaching approximately the same prediction error energy.

Assessing the environmental impacts of soil compaction in Life Cycle Assessment.

PubMed

Stoessel, Franziska; Sonderegger, Thomas; Bayer, Peter; Hellweg, Stefanie

2018-07-15

Maintaining biotic capacity is of key importance with regard to global food and biomass provision. One reason for productivity loss is soil compaction. In this paper, we use a statistical empirical model to assess long-term yield losses through soil compaction in a regionalized manner, with global coverage and for different agricultural production systems. To facilitate the application of the model, we provide an extensive dataset including crop production data (with 81 crops and corresponding production systems), related machinery application, as well as regionalized soil texture and soil moisture data. Yield loss is modeled for different levels of soil depth (0-25cm, 25-40cm and >40cm depth). This is of particular relevance since compaction in topsoil is classified as reversible in the short term (approximately four years), while recovery of subsoil layers takes much longer. We derive characterization factors quantifying the future average annual yield loss as a fraction of the current yield for 100years and applicable in Life Cycle Assessment studies of agricultural production. The results show that crops requiring enhanced machinery inputs, such as potatoes, have a major influence on soil compaction and yield losses, while differences between mechanized production systems (organic and integrated production) are small. The spatial variations of soil moisture and clay content are reflected in the results showing global hotspot regions especially susceptible to soil compaction, e.g. the South of Brazil, the Caribbean Islands, Central Africa, and the Maharashtra district of India. The impacts of soil compaction can be substantial, with highest annual yield losses in the range of 0.5% (95% percentile) due to one year of potato production (cumulated over 100y this corresponds to a one-time loss of 50% of the present yield). These modeling results demonstrate the necessity for including soil compaction effects in Life Cycle Impact Assessment. Copyright © 2018 Elsevier B.V. All rights reserved.

Nonlinear dynamic modeling for smart material electro-hydraulic actuator development

NASA Astrophysics Data System (ADS)

Larson, John P.; Dapino, Marcelo J.

2013-03-01

Smart material electro-hydraulic actuators use hydraulic rectification by one-way check valves to amplify the motion of smart materials, such as magnetostrictives and piezoelectrics, in order to create compact, lightweight actuators. A piston pump driven by a smart material is combined with a hydraulic cylinder to form a self-contained, power-by-wire actuator that can be used in place of a conventional hydraulic system without the need for hydraulic lines and a centralized pump. The performance of an experimental actuator driven by a 12.7 mm diameter, 114 mm length Terfenol-D rod is evaluated over a range of applied input frequencies, loads, and currents. The peak performance achieved is 37 W, moving a 220 N load at a rate of 17 cm/s and producing a blocked pressure of 12.5 MPa. Additional tests are conducted to quantify the dynamic behavior of the one-way reed valves using a scanning laser vibrometer to identify the frequency response of the reeds and the effect of the valve seat and fluid mass loading. A lumped-parameter model is developed for the system that includes valve inertia and fluid response nonlinearities, and the model results are compared with the experimental data.

SULFURIZATION OF IRON IN THE DYNAMIC SOLAR NEBULA AND IMPLICATIONS FOR PLANETARY COMPOSITIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ciesla, Fred J., E-mail: fciesla@uchicago.edu

One explanation for the enhanced ratio of volatiles to hydrogen in Jupiter’s atmosphere compared to a a gas of solar composition is that the planet accreted volatile-bearing clathrates during its formation. Models, however, suggest that S would be over abundant if clathrates were the primary carrier of Jupiter’s volatiles. This led to the suggestion that S was depleted in the outer nebula due to the formation troilite (FeS). Here, this depletion is quantitatively explored by modeling the coupled dynamical and chemical evolution of Fe grains in the solar nebula. It is found that disks that undergo rapid radial expansion frommore » an initially compact state may allow sufficient production of FeS and carry H{sub 2}S-depleted gas outward where ices would form, providing the conditions needed for S-depleted clathrates to form. However, this expansion would also carry FeS grains to this region, which could also be incorporated into planetesimals. Thus for clathrates to be a viable source of volatiles, models must account for the presence of both H{sub 2}S in FeS in the outer solar nebula.« less

Targeted numerical simulations of binary black holes for GW170104

NASA Astrophysics Data System (ADS)

Healy, J.; Lange, J.; O'Shaughnessy, R.; Lousto, C. O.; Campanelli, M.; Williamson, A. R.; Zlochower, Y.; Calderón Bustillo, J.; Clark, J. A.; Evans, C.; Ferguson, D.; Ghonge, S.; Jani, K.; Khamesra, B.; Laguna, P.; Shoemaker, D. M.; Boyle, M.; García, A.; Hemberger, D. A.; Kidder, L. E.; Kumar, P.; Lovelace, G.; Pfeiffer, H. P.; Scheel, M. A.; Teukolsky, S. A.

2018-03-01

In response to LIGO's observation of GW170104, we performed a series of full numerical simulations of binary black holes, each designed to replicate likely realizations of its dynamics and radiation. These simulations have been performed at multiple resolutions and with two independent techniques to solve Einstein's equations. For the nonprecessing and precessing simulations, we demonstrate the two techniques agree mode by mode, at a precision substantially in excess of statistical uncertainties in current LIGO's observations. Conversely, we demonstrate our full numerical solutions contain information which is not accurately captured with the approximate phenomenological models commonly used to infer compact binary parameters. To quantify the impact of these differences on parameter inference for GW170104 specifically, we compare the predictions of our simulations and these approximate models to LIGO's observations of GW170104.

Uncertainty in Damage Detection, Dynamic Propagation and Just-in-Time Networks

DTIC Science & Technology

2015-08-03

estimated parameter uncertainty in dynamic data sets; high order compact finite difference schemes for Helmholtz equations with discontinuous wave numbers...delay differential equations with a Gamma distributed delay. We found that with the same population size the histogram plots for the solution to the...schemes for Helmholtz equations with discontinuous wave numbers across interfaces. • We carried out numerical sensitivity analysis with respect to

Molecular dynamics investigation of dynamical heterogeneity and local structure in the supercooled liquid and glass states of Al

NASA Astrophysics Data System (ADS)

Li, Maozhi; Wang, Cai-Zhuang; Mendelev, Mikhail I.; Ho, Kai-Ming

2008-05-01

Molecular dynamics simulations are performed to study the structure and dynamical heterogeneity in the liquid and glass states of Al using a frequently employed embedded atom potential. While the pair correlation function of the glass and liquid states displays only minor differences, the icosahedral short-range order (ISRO) and the dynamics of the two states are very different. The ISRO is much stronger in the glass than in the liquid. It is also found that both the most mobile and the most immobile atoms in the glass state tend to form clusters, and the clusters formed by the immobile atoms are more compact. In order to investigate the local environment of each atom in the liquid and glass states, a local density is defined to characterize the local atomic packing. There is a strong correlation between the local packing density and the mobility of the atoms. These results indicate that dynamical heterogeneity in glasses is directly correlated to the local structure. We also analyze the diffusion mechanisms of atoms in the liquid and glass states. It is found that for the mobile atoms in the glass state, initially they are confined in the cages formed by their nearest neighbors and vibrating. On the time scale of β relaxation, the mobile atoms try to break up the cage confinement and hop into new cages. In the supercooled liquid states, however, atoms continuously diffuse. Furthermore, it is found that on the time scale of β relaxation, some of the mobile atoms in the glass state cooperatively hop, which is facilitated by the stringlike cluster structures. On the longer time scale, it is found that a certain fraction of atoms can simultaneously hop, although they are not nearest neighbors. Further analysis shows that these hopping atoms form big and more compact clusters than the characterized most mobile atoms. The cooperative rearrangement of these big compact clusters might facilitate the simultaneous hopping of atoms in the glass states on the long time scale.

Constraints on core collapse from the black hole mass function

NASA Astrophysics Data System (ADS)

Kochanek, C. S.

2015-01-01

We model the observed black hole mass function under the assumption that black hole formation is controlled by the compactness of the stellar core at the time of collapse. Low-compactness stars are more likely to explode as supernovae and produce neutron stars, while high-compactness stars are more likely to be failed supernovae that produce black holes with the mass of the helium core of the star. Using three sequences of stellar models and marginalizing over a model for the completeness of the black hole mass function, we find that the compactness ξ2.5 above which 50% of core collapses produce black holes is ξ _{2.5}^{50%}=0.24 (0.15 < ξ _{2.5}^{50%} < 0.37 at 90% confidence). The models also predict that f = 0.18 (0.09 < f < 0.39) of core collapses fail. We tested four other criteria for black hole formation based on ξ2.0 and ξ3.0, the compactnesses at enclosed masses of 2.0 or 3.0 rather than 2.5 M⊙, the mass of the iron core MFe, and the mass inside the oxygen burning shell MO. We found that ξ2.0 works as well as ξ2.5, while ξ3.0, MFe and MO are significantly worse. As expected from the high compactness of 20-25 M⊙ stars, black hole formation in this mass range provides a natural explanation of the red supergiant problem.

Computational strategies to address chromatin structure problems

NASA Astrophysics Data System (ADS)

Perišić, Ognjen; Schlick, Tamar

2016-06-01

While the genetic information is contained in double helical DNA, gene expression is a complex multilevel process that involves various functional units, from nucleosomes to fully formed chromatin fibers accompanied by a host of various chromatin binding enzymes. The chromatin fiber is a polymer composed of histone protein complexes upon which DNA wraps, like yarn upon many spools. The nature of chromatin structure has been an open question since the beginning of modern molecular biology. Many experiments have shown that the chromatin fiber is a highly dynamic entity with pronounced structural diversity that includes properties of idealized zig-zag and solenoid models, as well as other motifs. This diversity can produce a high packing ratio and thus inhibit access to a majority of the wound DNA. Despite much research, chromatin’s dynamic structure has not yet been fully described. Long stretches of chromatin fibers exhibit puzzling dynamic behavior that requires interpretation in the light of gene expression patterns in various tissue and organisms. The properties of chromatin fiber can be investigated with experimental techniques, like in vitro biochemistry, in vivo imagining, and high-throughput chromosome capture technology. Those techniques provide useful insights into the fiber’s structure and dynamics, but they are limited in resolution and scope, especially regarding compact fibers and chromosomes in the cellular milieu. Complementary but specialized modeling techniques are needed to handle large floppy polymers such as the chromatin fiber. In this review, we discuss current approaches in the chromatin structure field with an emphasis on modeling, such as molecular dynamics and coarse-grained computational approaches. Combinations of these computational techniques complement experiments and address many relevant biological problems, as we will illustrate with special focus on epigenetic modulation of chromatin structure.

Physically detached 'compact groups'

NASA Technical Reports Server (NTRS)

Hernquist, Lars; Katz, Neal; Weinberg, David H.

1995-01-01

A small fraction of galaxies appear to reside in dense compact groups, whose inferred crossing times are much shorter than a Hubble time. These short crossing times have led to considerable disagreement among researchers attempting to deduce the dynamical state of these systems. In this paper, we suggest that many of the observed groups are not physically bound but are chance projections of galaxies well separated along the line of sight. Unlike earlier similar proposals, ours does not require that the galaxies in the compact group be members of a more diffuse, but physically bound entity. The probability of physically separated galaxies projecting into an apparent compact group is nonnegligible if most galaxies are distributed in thin filaments. We illustrate this general point with a specific example: a simulation of a cold dark matter universe, in which hydrodynamic effects are included to identify galaxies. The simulated galaxy distribution is filamentary and end-on views of these filaments produce apparent galaxy associations that have sizes and velocity dispersions similar to those of observed compact groups. The frequency of such projections is sufficient, in principle, to explain the observed space density of groups in the Hickson catalog. We discuss the implications of our proposal for the formation and evolution of groups and elliptical galaxies. The proposal can be tested by using redshift-independent distance estimators to measure the line-of-sight spatial extent of nearby compact groups.

Shock-induced compaction of nanoparticle layers into nanostructured coating

NASA Astrophysics Data System (ADS)

Mayer, Alexander E.; Ebel, Andrei A.

2017-10-01

A new process of shock wave consolidation of nanoparticles into a nanocrystalline coating is theoretically considered. In the proposed scheme, the nanoparticle layers, which are attached to the substrate surface by adhesion, are compacted by plane ultra-short shock waves coming from the substrate. The initial adhesion is self-arisen at any contact between the nanoparticles without a pre-compression. The absence of the nanoparticle ejections due to the shock wave action is connected with the strong adhesive forces, which allow nanoparticles to be attached to each other and to substrate while they are being compacted; this should be valid for small enough nanoparticles. Severe plastic deformation of the nanoparticles and the increased temperature due to collapse of voids between them facilitate their compaction into the monolithic nanocrystalline layer. We consider the examples of Cu and Ni nanoparticles on Al substrate using molecular dynamic simulations. We show the efficiency of the action of multiple shock waves with the duration in the range 2-20 ps and the amplitude in the range 4-12 GPa for sequential layerwise compaction of nanoparticles. A series of shock waves can be created by a repetitive powerful pulsed laser irradiation of the opposite surface of the substrate. The method offers the challenge for the formation of nanostructured coatings of various compositions. The thickness of the compacted nanocrystalline coating can be locally varied and controlled by the number of acting pulses.

Meso-scopic Densification in Brittle Granular Materials

NASA Astrophysics Data System (ADS)

Neal, William; Appleby-Thomas, Gareth; Collins, Gareth

2013-06-01

Particulate materials are ideally suited to shock absorbing applications due to the large amounts of energy required to deform their inherently complex meso-structure. Significant effort is being made to improve macro-scale material models to represent these atypical materials. On the long road towards achieving this capability, an important milestone would be to understand how particle densification mechanisms are affected by loading rate. In brittle particulate materials, the majority of densification is caused by particle fracture. Macro-scale quasi-static and dynamic compaction curves have been measured that show good qualitative agreement. There are, however, some differences that appear to be dependent on the loading rate that require further investigation. This study aims to investigate the difference in grain-fracture behavior between the quasi-static and shock loading response of brittle glass microsphere beds using a combination of quasi-static and dynamic loading techniques. Results from pressure-density measurements, sample recovery, and meso-scale hydrocode models (iSALE, an in-house simulation package) are discussed to explain the differences in particle densification mechanisms between the two loading rate regimes. Gratefully funded by AWE.plc.

Dynamical study of Ωc0 in the chiral quark model

NASA Astrophysics Data System (ADS)

Yang, Gang; Ping, Jialun

2018-02-01

Recently, the experimental results of the LHCb Collaboration suggested the existence of five new excited states of Ωc0 : Ωc(3000 )0 , Ωc(3050 )0 , Ωc(3066 )0 , Ωc(3090 )0 , and Ωc(3119 )0 ; however, the quantum numbers of these new particles are not determined now. To understand the nature of these states, a dynamical calculation of Ωc0 both in five-quark configuration with quantum numbers I JP=0 (1/2 )- , 0 (3/2 )- , 0 (5/2 )- and in three-quark configuration with positive parity and negative parity was performed in the framework of the chiral quark model with the help of the Gaussian expansion method. The results show the masses both of the 1 P and the 2 S states in s s c systems are comparable to experimental data; Besides, Ξ D ¯ , ΞcK ¯ , and Ξc*K ¯ are also possible candidates of these new particles if the parity is negative. The distances between quark pairs suggest a compact structure nature.

Time-resolved fluorescence microscopy to study biologically related applications using sol-gel derived and cellular media

NASA Astrophysics Data System (ADS)

Toury, Marion; Chandler, Lin; Allison, Archie; Campbell, David; McLoskey, David; Holmes-Smith, A. Sheila; Hungerford, Graham

2011-03-01

Fluorescence microscopy provides a non-invasive means for visualising dynamic protein interactions. As well as allowing the calculation of kinetic processes via the use of time-resolved fluorescence, localisation of the protein within cells or model systems can be monitored. These fluorescence lifetime images (FLIM) have become the preferred technique for elucidating protein dynamics due to the fact that the fluorescence lifetime is an absolute measure, in the main independent of fluorophore concentration and intensity fluctuations caused by factors such as photobleaching. In this work we demonstrate the use of a time-resolved fluorescence microscopy, employing a high repetition rate laser excitation source applied to study the influence of a metal surface on fluorescence tagged protein and to elucidate viscosity using the fluorescence lifetime probe DASPMI. These were studied in a cellular environment (yeast) and in a model system based on a sol-gel derived material, in which silver nanostructures were formed in situ using irradiation from a semiconductor laser in CW mode incorporated on a compact time-resolved fluorescence microscope (HORIBA Scientific DeltaDiode and DynaMyc).

X-ray microtomography study of the compaction process of rods under tapping.

PubMed

Fu, Yang; Xi, Yan; Cao, Yixin; Wang, Yujie

2012-05-01

We present an x-ray microtomography study of the compaction process of cylindrical rods under tapping. The process is monitored by measuring the evolution of the orientational order parameter, local, and overall packing densities as a function of the tapping number for different tapping intensities. The slow relaxation dynamics of the orientational order parameter can be well fitted with a stretched-exponential law with stretching exponents ranging from 0.9 to 1.6. The corresponding relaxation time versus tapping intensity follows an Arrhenius behavior which is reminiscent of the slow dynamics in thermal glassy systems. We also investigated the boundary effect on the ordering process and found that boundary rods order faster than interior ones. In searching for the underlying mechanism of the slow dynamics, we estimated the initial random velocities of the rods under tapping and found that the ordering process is compatible with a diffusion mechanism. The average coordination number as a function of the tapping number at different tapping intensities has also been measured, which spans a range from 6 to 8.

Modeling of heat transfer in compacted machining chips during friction consolidation process

NASA Astrophysics Data System (ADS)

Abbas, Naseer; Deng, Xiaomin; Li, Xiao; Reynolds, Anthony

2018-04-01

The current study aims to provide an understanding of the heat transfer process in compacted aluminum alloy AA6061 machining chips during the friction consolidation process (FCP) through experimental investigations and mathematical modelling and numerical simulation. Compaction and friction consolidation of machining chips is the first stage of the Friction Extrusion Process (FEP), which is a novel method for recycling machining chips to produce useful products such as wires. In this study, compacted machining chips are modelled as a continuum whose material properties vary with density during friction consolidation. Based on density and temperature dependent thermal properties, the temperature field in the chip material and process chamber caused by frictional heating during the friction consolidation process is predicted. The predicted temperature field is found to compare well with temperature measurements at select points where such measurements can be made using thermocouples.

A physically based compact I-V model for monolayer TMDC channel MOSFET and DMFET biosensor.

PubMed

Rahman, Ehsanur; Shadman, Abir; Ahmed, Imtiaz; Khan, Saeed Uz Zaman; Khosru, Quazi D M

2018-06-08

In this work, a compact transport model has been developed for monolayer transition metal dichalcogenide (TMDC) channel MOSFET. The analytical model solves the Poisson's equation for the inversion charge density to get the electrostatic potential in the channel. Current is then calculated by solving the drift-diffusion equation. The model makes gradual channel approximation to simplify the solution procedure. The appropriate density of states obtained from the first principle density functional theory simulation has been considered to keep the model physically accurate for monolayer TMDC channel FET. The outcome of the model has been benchmarked against both experimental and numerical quantum simulation results with the help of a few fitting parameters. Using the compact model, detailed output and transfer characteristics of monolayer WSe 2 FET have been studied, and various performance parameters have been determined. The study confirms excellent ON and OFF state performances of monolayer WSe 2 FET which could be viable for the next generation high-speed, low power applications. Also, the proposed model has been extended to study the operation of a biosensor. A monolayer MoS 2 channel based dielectric modulated FET is investigated using the compact model for detection of a biomolecule in a dry environment.

A physically based compact I–V model for monolayer TMDC channel MOSFET and DMFET biosensor

NASA Astrophysics Data System (ADS)

Rahman, Ehsanur; Shadman, Abir; Ahmed, Imtiaz; Zaman Khan, Saeed Uz; Khosru, Quazi D. M.

2018-06-01

In this work, a compact transport model has been developed for monolayer transition metal dichalcogenide (TMDC) channel MOSFET. The analytical model solves the Poisson’s equation for the inversion charge density to get the electrostatic potential in the channel. Current is then calculated by solving the drift–diffusion equation. The model makes gradual channel approximation to simplify the solution procedure. The appropriate density of states obtained from the first principle density functional theory simulation has been considered to keep the model physically accurate for monolayer TMDC channel FET. The outcome of the model has been benchmarked against both experimental and numerical quantum simulation results with the help of a few fitting parameters. Using the compact model, detailed output and transfer characteristics of monolayer WSe2 FET have been studied, and various performance parameters have been determined. The study confirms excellent ON and OFF state performances of monolayer WSe2 FET which could be viable for the next generation high-speed, low power applications. Also, the proposed model has been extended to study the operation of a biosensor. A monolayer MoS2 channel based dielectric modulated FET is investigated using the compact model for detection of a biomolecule in a dry environment.

New broadband square-law detector

NASA Technical Reports Server (NTRS)

Reid, M. S.; Gardner, R. A.; Stelzried, C. T.

1975-01-01

Compact device has wide dynamic range, accurate square-law response, good thermal stability, high-level dc output with immunity to ground-loop problems, ability to insert known time constants for radiometric applications, and fast response times compatible with computer systems.

Dynamically hot galaxies. I - Structural properties

NASA Technical Reports Server (NTRS)

Bender, Ralf; Burstein, David; Faber, S. M.

1992-01-01

Results are reported from an analysis of the structural properties of dynamically hot galaxies which combines central velocity dispersion, effective surface brightness, and effective radius into a new 3-space (k), in which the axes are parameters that are physically meaningful. Hot galaxies are found to divide into groups in k-space that closely parallel conventional morphological classifications, namely, luminous ellipticals, compacts, bulges, bright dwarfs, and dwarf spheroidals. A major sequence is defined by luminous ellipticals, bulges, and most compacts, which together constitute a smooth continuum in k-space. Several properties vary smoothly with mass along this continuum, including bulge-to-disk ratio, radio properties, rotation, degree of velocity anisotropy, and 'unrelaxed'. A second major sequence is comprised of dwarf ellipticals and dwarf spheroidals. It is suggested that mass loss is a major factor in hot dwarf galaxies, but the dwarf sequence cannot be simply a mass-loss sequence, as it has the wrong direction in k-space.

A study of metal-ceramic wettability in SiC-Al using dynamic melt infiltration of SiC

NASA Technical Reports Server (NTRS)

Asthana, R.; Rohatgi, P. K.

1993-01-01

Pressure-assisted infiltration with a 2014 Al alloy of plain and Cu-coated single crystal platelets of alpha silicon carbide was used to study particulate wettability under dynamic conditions relevant to pressure casting of metal-matrix composites. The total penetration length of infiltrant metal in porous compacts was measured at the conclusion of solidification as a function of pressure, infiltration time, and SiC size for both plain and Cu-coated SiC. The experimental data were analyzed to obtain a threshold pressure for the effect of melt intrusion through SiC compacts. The threshold pressure was taken either directly as a measure of wettability or converted to an effective wetting angle using the Young-Laplace capillary equation. Cu coating resulted in partial but beneficial improvements in wettability as a result of its dissolution in the melt, compared to uncoated SiC.

Conformational dynamics of Peb4 exhibit "mother's arms" chain model: a molecular dynamics study.

PubMed

Dantu, Sarath Chandra; Khavnekar, Sagar; Kale, Avinash

2017-08-01

Peb4 from Campylobacter jejuni is an intertwined dimeric, periplasmic holdase, which also exhibits peptidyl prolyl cis/trans isomerase (PPIase) activity. Peb4 gene deletion alters the outer membrane protein profile and impairs cellular adhesion and biofilm formation for C. jejuni. Earlier crystallographic study has proposed that the PPIase domains are flexible and might form a cradle for holding the substrate and these aspects of Peb4 were explored using sub-microsecond molecular dynamics simulations in solution environment. Our simulations have revealed that PPIase domains are highly flexible and undergo a large structural change where they move apart from each other by 8 nm starting at .5 nm. Further, this large conformational change renders Peb4 as a compact protein with crossed-over conformation, forms a central cavity, which can "cradle" the target substrate. As reported for other chaperone proteins, flexibility of linker region connecting the chaperone and PPIase domains is key to forming the "crossed-over" conformation. The conformational transition of the Peb4 protein from the X-ray structure to the crossed-over conformation follows the "mother's arms" chain model proposed for the FkpA chaperone protein. Our results offer insights into how Peb4 and similar chaperones can use the conformational heterogeneity at their disposal to perform its much-revered biological function.

Treatment of waste printed wire boards in electronic waste for safe disposal.

PubMed

Niu, Xiaojun; Li, Yadong

2007-07-16

The printed wire boards (PWBs) in electronic waste (E-waste) have been found to contain large amounts of toxic substances. Studies have concluded that the waste PWBs are hazardous wastes because they fails the toxicity characteristic leaching procedure (TCLP) test with high level of lead (Pb) leaching out. In this study, two treatment methods - high-pressure compaction and cement solidification - were explored for rendering the PWBs into non-hazardous forms so that they may be safely disposed or used. The high-pressure compaction method could turn the PWBs into high-density compacts with significant volume reduction, but the impact resistance of the compacts was too low to keep them intact in the environment for a long run. In contrast, the cement solidification could turn the PWBs into strong monoliths with high impact resistance and relatively high compressive strength. The leaching of the toxic heavy metal Pb from the solidified samples was evaluated by both a dynamic leaching test and the TCLP test. The dynamic leaching results revealed that Pb could be effectively confined in the solidified products under very harsh environmental conditions. The TCLP test results showed that the leaching level of Pb was far below the regulatory level of 5mg/L, suggesting that the solidified PWBs are no longer hazardous. It was concluded that the cement solidification is an effective way to render the waste PWBs into environmentally benign forms so that they can be disposed of as ordinary solid wastes or beneficially used in the place of concrete in some applications.

A compressibility based model for predicting the tensile strength of directly compressed pharmaceutical powder mixtures.

PubMed

Reynolds, Gavin K; Campbell, Jacqueline I; Roberts, Ron J

2017-10-05

A new model to predict the compressibility and compactability of mixtures of pharmaceutical powders has been developed. The key aspect of the model is consideration of the volumetric occupancy of each powder under an applied compaction pressure and the respective contribution it then makes to the mixture properties. The compressibility and compactability of three pharmaceutical powders: microcrystalline cellulose, mannitol and anhydrous dicalcium phosphate have been characterised. Binary and ternary mixtures of these excipients have been tested and used to demonstrate the predictive capability of the model. Furthermore, the model is shown to be uniquely able to capture a broad range of mixture behaviours, including neutral, negative and positive deviations, illustrating its utility for formulation design. Copyright © 2017 Elsevier B.V. All rights reserved.

Documentation of a computer program to simulate aquifer-system compaction using the modular finite-difference ground-water flow model

USGS Publications Warehouse

Leake, S.A.; Prudic, David E.

1988-01-01

The process of permanent compaction is not routinely included in simulations of groundwater flow. To simulate storage changes from both elastic and inelastic compaction, a computer program was written for use with the U. S. Geological Survey modular finite-difference groundwater flow model. The new program is called the Interbed-Storage Package. In the Interbed-Storage Package, elastic compaction or expansion is assumed to be proportional to change in head. The constant of proportionality is the product of skeletal component of elastic specific storage and thickness of the sediments. Similarly, inelastic compaction is assumed to be proportional to decline in head. The constant of proportionality is the product of the skeletal component of inelastic specific storage and the thickness of the sediments. Storage changes are incorporated into the groundwater flow model by adding an additional term to the flow equation. Within a model time step, the package appropriately apportions storage changes between elastic and inelastic components on the basis of the relation of simulated head to the previous minimum head. Another package that allows for a time-varying specified-head boundary is also documented. This package was written to reduce the data requirements for test simulations of the Interbed-Storage Package. (USGS)

Hybrid Discrete Element - Finite Element Simulation for Railway Bridge-Track Interaction

NASA Astrophysics Data System (ADS)

Kaewunruen, S.; Mirza, O.

2017-10-01

At the transition zone or sometimes called ‘bridge end’ or ‘bridge approach’, the stiffness difference between plain track and track over bridge often causes aggravated impact loading due to uneven train movement onto the area. The differential track settlement over the transition has been a classical problem in railway networks, especially for the aging rail infrastructures around the world. This problem is also additionally worsened by the fact that the construction practice over the area is difficult, resulting in a poor compaction of formation and subgrade. This paper presents an advanced hybrid simulation using coupled discrete elements and finite elements to investigate dynamic interaction at the transition zone. The goal is to evaluate the dynamic stresses and to better understand the impact dynamics redistribution at the bridge end. An existing bridge ‘Salt Pan Creek Railway Bridge’, located between Revesby and Kingsgrove, has been chosen for detailed investigation. The Salt Pan Bridge currently demonstrates crushing of the ballast causing significant deformation and damage. Thus, it’s imperative to assess the behaviours of the ballast under dynamic loads. This can be achieved by modelling the nonlinear interactions between the steel rail and sleeper, and sleeper to ballast. The continuum solid elements of track components have been modelled using finite element approach, while the granular media (i.e. ballast) have been simulated by discrete element method. The hybrid DE/FE model demonstrates that ballast experiences significant stresses at the contacts between the sleeper and concrete section. These overburden stress exists in the regions below the outer rails, identify fouling and permanent deformation of the ballast.

Design of voice coil motor dynamic focusing unit for a laser scanner

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Moon G.; Kim, Gaeun; Lee, Chan-Woo

2014-04-15

Laser scanning systems have been used for material processing tasks such as welding, cutting, marking, and drilling. However, applications have been limited by the small range of motion and slow speed of the focusing unit, which carries the focusing optics. To overcome these limitations, a dynamic focusing system with a long travel range and high speed is needed. In this study, a dynamic focusing unit for a laser scanning system with a voice coil motor (VCM) mechanism is proposed to enable fast speed and a wide focusing range. The VCM has finer precision and higher speed than conventional step motorsmore » and a longer travel range than earlier lead zirconium titanate actuators. The system has a hollow configuration to provide a laser beam path. This also makes it compact and transmission-free and gives it low inertia. The VCM's magnetics are modeled using a permeance model. Its design parameters are determined by optimization using the Broyden–Fletcher–Goldfarb–Shanno method and a sequential quadratic programming algorithm. After the VCM is designed, the dynamic focusing unit is fabricated and assembled. The permeance model is verified by a magnetic finite element method simulation tool, Maxwell 2D and 3D, and by measurement data from a gauss meter. The performance is verified experimentally. The results show a resolution of 0.2 μm and travel range of 16 mm. These are better than those of conventional focusing systems; therefore, this focusing unit can be applied to laser scanning systems for good machining capability.« less

Two-stage DNA compaction induced by silver ions suggests a cooperative binding mechanism

NASA Astrophysics Data System (ADS)

Jiang, Wen-Yan; Ran, Shi-Yong

2018-05-01

The interaction between silver ions and DNA plays an important role in the therapeutic use of silver ions and in related technologies such as DNA sensors. However, the underlying mechanism has not been fully understood. In this study, the dynamics of Ag+-DNA interaction at a single-molecule level was studied using magnetic tweezers. AgNO3 solutions with concentrations ranging from 1 μM to 20 μM led to a 1.4-1.8 μm decrease in length of a single λ-DNA molecule, indicating that Ag+ has a strong binding with DNA, causing the DNA conformational change. The compaction process comprises one linear declining stage and another sigmoid-shaped stage, which can be attributed to the interaction mechanism. Considering the cooperative effect, the sigmoid trend was well explained using a phenomenological model. By contrast, addition of silver nanoparticle solution induced no detectable transition of DNA. The dependence of the interaction on ionic strength and DNA concentration was examined via morphology characterization and particle size distribution measurement. The size of the Ag+-DNA complex decreased with an increase in Ag+ ionic strength ranging from 1 μM to 1 mM. Morphology characterization confirmed that silver ions induced DNA to adopt a compacted globular conformation. At a fixed [AgNO3]:[DNA base pairs] ratio, increasing DNA concentration led to increased sizes of the complexes. Intermolecular interaction is believed to affect the Ag+-DNA complex formation to a large extent.

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy

PubMed Central

Soranno, Andrea; Buchli, Brigitte; Nettels, Daniel; Cheng, Ryan R.; Müller-Späth, Sonja; Pfeil, Shawn H.; Hoffmann, Armin; Lipman, Everett A.; Makarov, Dmitrii E.; Schuler, Benjamin

2012-01-01

Internal friction, which reflects the “roughness” of the energy landscape, plays an important role for proteins by modulating the dynamics of their folding and other conformational changes. However, the experimental quantification of internal friction and its contribution to folding dynamics has remained challenging. Here we use the combination of single-molecule Förster resonance energy transfer, nanosecond fluorescence correlation spectroscopy, and microfluidic mixing to determine the reconfiguration times of unfolded proteins and investigate the mechanisms of internal friction contributing to their dynamics. Using concepts from polymer dynamics, we determine internal friction with three complementary, largely independent, and consistent approaches as an additive contribution to the reconfiguration time of the unfolded state. We find that the magnitude of internal friction correlates with the compactness of the unfolded protein: its contribution dominates the reconfiguration time of approximately 100 ns of the compact unfolded state of a small cold shock protein under native conditions, but decreases for more expanded chains, and approaches zero both at high denaturant concentrations and in intrinsically disordered proteins that are expanded due to intramolecular charge repulsion. Our results suggest that internal friction in the unfolded state will be particularly relevant for the kinetics of proteins that fold in the microsecond range or faster. The low internal friction in expanded intrinsically disordered proteins may have implications for the dynamics of their interactions with cellular binding partners. PMID:22492978

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

PubMed

Soranno, Andrea; Buchli, Brigitte; Nettels, Daniel; Cheng, Ryan R; Müller-Späth, Sonja; Pfeil, Shawn H; Hoffmann, Armin; Lipman, Everett A; Makarov, Dmitrii E; Schuler, Benjamin

2012-10-30

Internal friction, which reflects the "roughness" of the energy landscape, plays an important role for proteins by modulating the dynamics of their folding and other conformational changes. However, the experimental quantification of internal friction and its contribution to folding dynamics has remained challenging. Here we use the combination of single-molecule Förster resonance energy transfer, nanosecond fluorescence correlation spectroscopy, and microfluidic mixing to determine the reconfiguration times of unfolded proteins and investigate the mechanisms of internal friction contributing to their dynamics. Using concepts from polymer dynamics, we determine internal friction with three complementary, largely independent, and consistent approaches as an additive contribution to the reconfiguration time of the unfolded state. We find that the magnitude of internal friction correlates with the compactness of the unfolded protein: its contribution dominates the reconfiguration time of approximately 100 ns of the compact unfolded state of a small cold shock protein under native conditions, but decreases for more expanded chains, and approaches zero both at high denaturant concentrations and in intrinsically disordered proteins that are expanded due to intramolecular charge repulsion. Our results suggest that internal friction in the unfolded state will be particularly relevant for the kinetics of proteins that fold in the microsecond range or faster. The low internal friction in expanded intrinsically disordered proteins may have implications for the dynamics of their interactions with cellular binding partners.

Galactic Abundance Gradients fro IR Fine Strucuture LInes in Compact H II regions

NASA Technical Reports Server (NTRS)

Afflerbach, A.; Churchwell, E.; Werner, M. W.

1996-01-01

We present observations of the [S III]19(micro)m, [O III]52 and 88(micro)m, and [N III]57(micro)m lines toward 18 compact and ultracompact (UC) H II regions. These data were combined with data from the literature and high-resolution radio continuum maps to construct detailed statistical equilibrium and ionization equilibrium models of 34 compact H II regions located at galactocentric distances (Dg)0-12kpc. Our models simultaneously fit the observed IR fine-structure lines and high-resolution radio continuum maps.

Evolutionary dynamics under interactive diversity

NASA Astrophysics Data System (ADS)

Su, Qi; Li, Aming; Wang, Long

2017-10-01

As evidenced by many cases in human societies, individuals often make different behavior decisions in different interactions, and adaptively adjust their behavior in changeable interactive scenarios. However, up to now, how such diverse interactive behavior affects cooperation dynamics has still remained unknown. Here we develop a general framework of interactive diversity, which models individuals’ separated behavior against distinct opponents and their adaptive adjustment in response to opponents’ strategies, to explore the evolution of cooperation. We find that interactive diversity enables individuals to reciprocate every single opponent, and thus sustains large-scale reciprocal interactions. Our work witnesses an impressive boost of cooperation for a notably extensive range of parameters and for all pairwise games. These results are robust against well-mixed and various networked populations, and against degree-normalized and cumulative payoff patterns. From the perspective of network dynamics, distinguished from individuals competing for nodes in most previous work, in this paper, the system evolves in the form of behavior disseminating along edges. We propose a theoretical method based on evolution of edges, which predicts well both the frequency of cooperation and the compact cooperation clusters. Our thorough investigation clarifies the positive role of interactive diversity in resolving social dilemmas and highlights the significance of understanding evolutionary dynamics from the viewpoint of edge dynamics.

Incorporating Sediment Compaction Into a Gravitationally Self-consistent Model for Global Sea-level Change

NASA Astrophysics Data System (ADS)

Ferrier, K.; Mitrovica, J. X.

2015-12-01

In sedimentary deltas and fans, sea-level changes are strongly modulated by the deposition and compaction of marine sediment. The deposition of sediment and incorporation of water into the sedimentary pore space reduces sea level by increasing the elevation of the seafloor, which reduces the thickness of sea-water above the bed. In a similar manner, the compaction of sediment and purging of water out of the sedimentary pore space increases sea level by reducing the elevation of the seafloor, which increases the thickness of sea water above the bed. Here we show how one can incorporate the effects of sediment deposition and compaction into the global, gravitationally self-consistent sea-level model of Dalca et al. (2013). Incorporating sediment compaction requires accounting for only one additional quantity that had not been accounted for in Dalca et al. (2013): the mean porosity in the sediment column. We provide a general analytic framework for global sea-level changes including sediment deposition and compaction, and we demonstrate how sea level responds to deposition and compaction under one simple parameterization for compaction. The compaction of sediment generates changes in sea level only by changing the elevation of the seafloor. That is, sediment compaction does not affect the mass load on the crust, and therefore does not generate perturbations in crustal elevation or the gravity field that would further perturb sea level. These results have implications for understanding sedimentary effects on sea-level changes and thus for disentangling the various drivers of sea-level change. ReferencesDalca A.V., Ferrier K.L., Mitrovica J.X., Perron J.T., Milne G.A., Creveling J.R., 2013. On postglacial sea level - III. Incorporating sediment redistribution. Geophysical Journal International, doi: 10.1093/gji/ggt089.

Relative astrometry of compact flaring structures in Sgr A* with polarimetric very long baseline interferometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Michael D.; Doeleman, Sheperd S.; Fish, Vincent L.

2014-10-20

We demonstrate that polarimetric interferometry can be used to extract precise spatial information about compact polarized flares of Sgr A*. We show that, for a faint dynamical component, a single interferometric baseline suffices to determine both its polarization and projected displacement from the quiescent intensity centroid. A second baseline enables two-dimensional reconstruction of the displacement, and additional baselines can self-calibrate using the flare, enhancing synthesis imaging of the quiescent emission. We apply this technique to simulated 1.3 mm wavelength observations of a 'hot spot' embedded in a radiatively inefficient accretion disk around Sgr A*. Our results indicate that, even withmore » current sensitivities, polarimetric interferometry with the Event Horizon Telescope can achieve ∼5 μas relative astrometry of compact flaring structures near Sgr A* on timescales of minutes.« less

A Generic Nonlinear Aerodynamic Model for Aircraft

NASA Technical Reports Server (NTRS)

Grauer, Jared A.; Morelli, Eugene A.

2014-01-01

A generic model of the aerodynamic coefficients was developed using wind tunnel databases for eight different aircraft and multivariate orthogonal functions. For each database and each coefficient, models were determined using polynomials expanded about the state and control variables, and an othgonalization procedure. A predicted squared-error criterion was used to automatically select the model terms. Modeling terms picked in at least half of the analyses, which totalled 45 terms, were retained to form the generic nonlinear aerodynamic (GNA) model. Least squares was then used to estimate the model parameters and associated uncertainty that best fit the GNA model to each database. Nonlinear flight simulations were used to demonstrate that the GNA model produces accurate trim solutions, local behavior (modal frequencies and damping ratios), and global dynamic behavior (91% accurate state histories and 80% accurate aerodynamic coefficient histories) under large-amplitude excitation. This compact aerodynamics model can be used to decrease on-board memory storage requirements, quickly change conceptual aircraft models, provide smooth analytical functions for control and optimization applications, and facilitate real-time parametric system identification.

Modeling the Compression of Merged Compact Toroids by Multiple Plasma Jets

NASA Technical Reports Server (NTRS)

Thio, Y. C. Francis; Knapp, Charles E.; Kirkpatrick, Ron; Rodgers, Stephen L. (Technical Monitor)

2000-01-01

A fusion propulsion scheme has been proposed that makes use of the merging of a spherical distribution of plasma jets to dynamically form a gaseous liner. The gaseous liner is used to implode a magnetized target to produce the fusion reaction in a standoff manner. In this paper, the merging of the plasma jets to form the gaseous liner is investigated numerically. The Los Alamos SPHINX code, based on the smoothed particle hydrodynamics method is used to model the interaction of the jets. 2-D and 3-D simulations have been performed to study the characteristics of the resulting flow when these jets collide. The results show that the jets merge to form a plasma liner that converge radially which may be used to compress the central plasma to fusion conditions. Details of the computational model and the SPH numerical methods will be presented together with the numerical results.

Geodetic glacier mass balancing on ice caps - inseparably connected to firn modelling?

NASA Astrophysics Data System (ADS)

Saß, Björn L.; Sauter, Tobias; Seehaus, Thorsten; Braun, Matthias H.

2017-04-01

Observed melting of glaciers and ice caps in the polar regions contribute to the ongoing global sea level rise (SLR). A rising sea level and its consequences are one of the major challenges for coastal societies in the next decades to centuries. Gaining knowledge about the main drivers of SLR and bringing it together is one recent key-challenge for environmental science. The high arctic Svalbard archipelago faced a strong climatic change in the last decades, associated with a change in the cryosphere. Vestfonna, a major Arctic ice cap in the north east of Svalbard, harbors land and marine terminating glaciers, which expose a variability of behavior. We use high resolution remote sensing data from space-borne radar (TanDEM-X, TerraSAR-X, Sentinel-1a), acquired between 2009 and 2015, to estimate glacier velocity and high accurate surface elevation changes. For DEM registration we use space-borne laser altimetry (ICESat) and an existing in-situ data archive (IPY Kinnvika). In order to separate individual glacier basin changes for a detailed mass balance study and for further SLR contribution estimates, we use glacier outlines from the Global Land Ice Measurements from Space (GLIMS) project. Remaining challenges of space-borne observations are the reduction of measurement uncertainties, in the case of Synthetic Aperture Radar most notably signal penetration into the glacier surface. Furthermore, in order to convert volume to mass change one has to use the density of the changed mass (conversion factor) and one has to account for the mass conservation processes in the firn package (firn compaction). Both, the conversion factor and the firn compaction are not (yet) measurable for extensive ice bodies. They have to be modelled by coupling point measurements and regional gridded climate data. Results indicate a slight interior thickening contrasted with wide spread thinning in the ablation zone of the marine terminating outlets. While one glacier system draining to the north west shows re-advance and possibly surge evidence, the majority of the outlets draining south- and eastwards are in stable or retreating dynamic conditions. Only two southern outlet glaciers speeded up between 2009 and 2015. We target measurement uncertainties by using in-situ missions as well as further comparable space-borne sensors. The mass conversion factor ('dhdt-problem') and the compaction processes are estimated by an pythonic offline firn compaction model (FCM) which is forced with Regional Climate Model (RCM) data. The RCM data and the FCM output are validated against an in-situ data archive.

Absorption models for low-frequency variability in compact radio sources

NASA Technical Reports Server (NTRS)

Marscher, A. P.

1979-01-01

The consequences of the most plausible version of the absorption model for low-frequency variability in compact extragalactic radio sources are considered. The general restrictions placed on such a model are determined, and observational tests are suggested that can be used either to support the model or to discriminate among its various versions. It is shown that low-frequency variability in compact radio sources can be successfully explained by a class of models in which the flux is modulated by changes in free-free optical depth within an intervening ionized medium. Two versions of such a model are distinguished, one involving large changes in optical depth and the other, small changes. It is noted that while absorption effects are capable of causing rapid flux and structural variations at centimetric wavelengths, the models predict detailed behavior that is in direct conflict with observational data.

A quantum wave based compact modeling approach for the current in ultra-short DG MOSFETs suitable for rapid multi-scale simulations

NASA Astrophysics Data System (ADS)

Hosenfeld, Fabian; Horst, Fabian; Iñíguez, Benjamín; Lime, François; Kloes, Alexander

2017-11-01

Source-to-drain (SD) tunneling decreases the device performance in MOSFETs falling below the 10 nm channel length. Modeling quantum mechanical effects including SD tunneling has gained more importance specially for compact model developers. The non-equilibrium Green's function (NEGF) has become a state-of-the-art method for nano-scaled device simulation in the past years. In the sense of a multi-scale simulation approach it is necessary to bridge the gap between compact models with their fast and efficient calculation of the device current, and numerical device models which consider quantum effects of nano-scaled devices. In this work, an NEGF based analytical model for nano-scaled double-gate (DG) MOSFETs is introduced. The model consists of a closed-form potential solution of a classical compact model and a 1D NEGF formalism for calculating the device current, taking into account quantum mechanical effects. The potential calculation omits the iterative coupling and allows the straightforward current calculation. The model is based on a ballistic NEGF approach whereby backscattering effects are considered as second order effect in a closed-form. The accuracy and scalability of the non-iterative DG MOSFET model is inspected in comparison with numerical NanoMOS TCAD data for various channel lengths. With the help of this model investigations on short-channel and temperature effects are performed.

New Generation of Superconducting Solenoids for Heavy-Ion Linac Application

NASA Astrophysics Data System (ADS)

Ostroumov, P. N.; Kim, S. H.; Lessner, E. S.; Shepard, K. W.; Laxdal, R. E.

2002-01-01

The beam dynamics of superconducting (SC) heavy-ion linacs operating in the velocity range below 0.4c require a compact accelerating-focusing lattice. The use of SC solenoids together with SC RF resonators within a common cryostat can solve the real-estate problem. The solenoids must have low fringe fields to avoid magnetic-flux capture in the SC RF resonators. Also, incorporating dipole steering coils together with the SC solenoids in one magnet assembly can increase the compactness of the linac lattice. R&D work has been carried out to determine the feasibility of combining the three elements of high solenoid field, low fringe field, and integral dipole field, into one compact package. A 9-Tesla magnet has been initially designed and will be prototyped, with the goal of eventually developing 14-Tesla solenoids of similar design. The most important design issues are: (1) to minimize stray field in the RF cavity region using SC bucking coils and (2) to achieve adequate mechanical stability of the transverse dipole windings in the presence of forces produced by the solenoid/bucking coil assembly. The assembly, including terminals, switches, and protection circuit, are designed to fit inside a 25-cm diameter helium reservoir. The results of the preliminary design of the solenoid, including numerical simulations of the beam dynamics, are reported.

Development and application of compact and on-chip electron linear accelerators for dynamic tracking cancer therapy and DNA damage/repair analysis

NASA Astrophysics Data System (ADS)

Uesaka, M.; Demachi, K.; Fujiwara, T.; Dobashi, K.; Fujisawa, H.; Chhatkuli, R. B.; Tsuda, A.; Tanaka, S.; Matsumura, Y.; Otsuki, S.; Kusano, J.; Yamamoto, M.; Nakamura, N.; Tanabe, E.; Koyama, K.; Yoshida, M.; Fujimori, R.; Yasui, A.

2015-06-01

We are developing compact electron linear accelerators (hereafter linac) with high RF (Radio Frequency) frequency (9.3 GHz, wavelength 32.3 mm) of X-band and applying to medicine and non-destructive testing. Especially, potable 950 keV and 3.95 MeV linac X-ray sources have been developed for on-site transmission testing at several industrial plants and civil infrastructures including bridges. 6 MeV linac have been made for pinpoint X-ray dynamic tracking cancer therapy. The length of the accelerating tube is ∼600 mm. The electron beam size at the X-ray target is less than 1 mm and X-ray spot size at the cancer is less than 3 mm. Several hardware and software are under construction for dynamic tracking therapy for moving lung cancer. Moreover, as an ultimate compact linac, we are designing and manufacturing a laser dielectric linac of ∼1 MeV with Yr fiber laser (283 THz, wavelength 1.06 pm). Since the wavelength is 1.06 μm, the length of one accelerating strcture is tens pm and the electron beam size is in sub-micro meter. Since the sizes of cell and nuclear are about 10 and 1 μm, respectively, we plan to use this “On-chip” linac for radiation-induced DNA damage/repair analysis. We are thinking a system where DNA in a nucleus of cell is hit by ∼1 μm electron or X-ray beam and observe its repair by proteins and enzymes in live cells in-situ.

Shear-enhanced compaction in viscoplastic rocks

NASA Astrophysics Data System (ADS)

Yarushina, V. M.; Podladchikov, Y. Y.

2012-04-01

The phenomenon of mutual influence of compaction and shear deformation was repeatedly reported in the literature over the past years. Dilatancy and shear-enhanced compaction of porous rocks were experimentally observed during both rate-independent and rate-dependent inelastic deformation. Plastic pore collapse was preceding the onset of dilatancy and shear-enhanced compaction. Effective bulk viscosity is commonly used to describe compaction driven fluid flow in porous rocks. Experimental data suggest that bulk viscosity of a fluid saturated rock might be a function of both the effective pressure and the shear stress. Dilatancy and shear-enhanced compaction can alter the transport properties of rocks through their influence on permeability and compaction length scale. Recent investigations show that shear stresses in deep mantle rocks can be responsible for spontaneous development of localized melt-rich bands and segregation of small amounts of melt from the solid rock matrix through shear channeling instability. Usually it is assumed that effective viscosity is a function of porosity only. Thus coupling between compaction and shear deformation is ignored. Spherical model which considers a hollow sphere subjected to homogeneous tractions on the outer boundary as a representative elementary volume succeeded in predicting the volumetric compaction behavior of porous rocks and metals to a hydrostatic pressure in a wide range of porosities. Following the success of this simple model we propose a cylindrical model of void compaction and decompaction due to the non-hydrostatic load. The infinite viscoplastic layer with a cylindrical hole is considered as a representative volume element. The remote boundary of the volume is subjected to a homogeneous non-hydrostatic load such that plane strain conditions are fulfilled through the volume. At some critical values of remote stresses plastic zone develops around the hole. The dependence of the effective bulk viscosity on the properties of individual components as well as on the stress state is examined. We show that bulk viscosity is a function of porosity, effective pressure and shear stress. Decreasing porosity tends to increase bulk viscosity whereas increasing shear stress and increasing effective pressure reduce it.

Dynamic interplay between catalytic and lectin domains of GalNAc-transferases modulates protein O-glycosylation

NASA Astrophysics Data System (ADS)

Lira-Navarrete, Erandi; de Las Rivas, Matilde; Compañón, Ismael; Pallarés, María Carmen; Kong, Yun; Iglesias-Fernández, Javier; Bernardes, Gonçalo J. L.; Peregrina, Jesús M.; Rovira, Carme; Bernadó, Pau; Bruscolini, Pierpaolo; Clausen, Henrik; Lostao, Anabel; Corzana, Francisco; Hurtado-Guerrero, Ramon

2015-05-01

Protein O-glycosylation is controlled by polypeptide GalNAc-transferases (GalNAc-Ts) that uniquely feature both a catalytic and lectin domain. The underlying molecular basis of how the lectin domains of GalNAc-Ts contribute to glycopeptide specificity and catalysis remains unclear. Here we present the first crystal structures of complexes of GalNAc-T2 with glycopeptides that together with enhanced sampling molecular dynamics simulations demonstrate a cooperative mechanism by which the lectin domain enables free acceptor sites binding of glycopeptides into the catalytic domain. Atomic force microscopy and small-angle X-ray scattering experiments further reveal a dynamic conformational landscape of GalNAc-T2 and a prominent role of compact structures that are both required for efficient catalysis. Our model indicates that the activity profile of GalNAc-T2 is dictated by conformational heterogeneity and relies on a flexible linker located between the catalytic and the lectin domains. Our results also shed light on how GalNAc-Ts generate dense decoration of proteins with O-glycans.

Confinement dynamics of a semiflexible chain inside nano-spheres

NASA Astrophysics Data System (ADS)

Fathizadeh, A.; Heidari, Maziar; Eslami-Mossallam, B.; Ejtehadi, M. R.

2013-07-01

We study the conformations of a semiflexible chain, confined in nano-scaled spherical cavities, under two distinct processes of confinement. Radial contraction and packaging are employed as two confining procedures. The former method is performed by gradually decreasing the diameter of a spherical shell which envelopes a confined chain. The latter procedure is carried out by injecting the chain inside a spherical shell through a hole on the shell surface. The chain is modeled with a rigid body molecular dynamics simulation and its parameters are adjusted to DNA base-pair elasticity. Directional order parameter is employed to analyze and compare the confined chain and the conformations of the chain for two different sizes of the spheres are studied in both procedures. It is shown that for the confined chains in the sphere sizes of our study, they appear in spiral or tennis-ball structures, and the tennis-ball structure is more likely to be observed in more compact confinements. Our results also show that the dynamical procedure of confinement and the rate of the confinement are influential parameters of the structure of the chain inside spherical cavities.

A blue-LED-based device for selective photocoagulation of superficial abrasions: theoretical modeling and in vivo validation

NASA Astrophysics Data System (ADS)

Rossi, Francesca; Pini, Roberto; De Siena, Gaetano; Massi, Daniela; Pavone, Francesco S.; Alfieri, Domenico; Cannarozzo, Giovanni

2010-02-01

The blue light (~400 nm) emitted by high power Light Emitting Diodes (LED) is selectively absorbed by the haemoglobin content of blood and then converted into heat. This is the basic concept in setting up a compact, low-cost, and easy-to-handle photohaemostasis device for the treatment of superficial skin abrasions. Its main application is in reducing bleeding from superficial capillary vessels during laser induced aesthetic treatments, such as skin resurfacing, thus reducing the treatment time and improving aesthetic results (reduction of scar formation). In this work we firstly present the preliminary modeling study: a Finite Element Model (FEM) of the LED induced photothermal process was set up, in order to estimate the optimal wavelength and treatment time, by studying the temperature dynamics in the tissue. Then, a compact, handheld illumination device has been designed: commercially available high power LEDs emitting in the blue region were mounted in a suitable and ergonomic case. The prototype was tested in the treatment of dorsal excoriations in rats. Thermal effects were monitored by an infrared thermocamera, experimentally evidencing the modest and confined heating effects and confirming the modeling predictions. Objective observations and histopathological analysis performed in a follow-up study showed no adverse reactions and no thermal damage in the treated areas and surrounding tissues. The device was then used in human patients, in order to stop bleeding during Erbium laser skin resurfacing procedure. By inducing LED-based photocoagulation, the overall treatment time was shortened and scar formation was reduced, thus enhancing esthetic effect of the laser procedure.

Forecasting Educational Futures. Resolving Uncertainties and Disagreements through Compact Policy Assessment.

ERIC Educational Resources Information Center

Hudson, Barclay M.

Descriptions of models for policy analysis in future studies are presented. Separate sections of the paper focus on the need for appropriate technologies of social science in future studies, a description of "compact policy assessment" (CPA), and a comparison of two CPA methods, Compass and Delphi. Compact policy assessment refers to any low-cost,…

Apical stress distribution under vertical compaction of gutta-percha and occlusal loads in canals with varying apical sizes: a three-dimensional finite element analysis.

PubMed

Yuan, K; Niu, C; Xie, Q; Jiang, W; Gao, L; Ma, R; Huang, Z

2018-02-01

To investigate and compare the effects of two apical canal instrumentation protocols on apical stress distribution at the root apex under vertical compaction of gutta-percha and occlusal loads using finite element analysis. Three finite element analysis models of a mandibular first premolar were reconstructed: an original canal model, a size 35, .04 taper apical canal enlargement model and a Lightspeed size 60 apical canal enlargement model. A 15 N compaction force was applied vertically to the gutta-percha 5 mm from the apex. A 175 N occlusal load in two directions (vertical and 45° to the longitudinal axis of the tooth) was simulated. Stresses in the apical 2 mm of the root were calculated and compared among the three models. Under vertical compaction, stresses in the apical canal instrumented by Lightspeed size 60 (maximal 3.3 MPa) were higher than that of the size 35, .04 taper model (maximal 1.3 MPa). In the case of the two occlusal forces, the Lightspeed size 60 apical enlargement was associated with the greatest stress distribution in the apical region. The greatest stress and the most obvious stress difference between the models appeared at the tip of the root when occlusal and vertical compaction loads were applied. Apical enlargement caused stress distribution changes in the apical region of roots. The larger apical size led to higher stress concentration at the root apex. © 2017 International Endodontic Journal. Published by John Wiley & Sons Ltd.

An evaluation of three-dimensional modeling of compaction cycles by analyzing the densification behavior of binary and ternary mixtures.

PubMed

Picker, K M; Bikane, F

2001-08-01

The aim of the study is to use the 3D modeling technique of compaction cycles for analysis of binary and ternary mixtures. Three materials with very different deformation and densification characteristics [cellulose acetate (CAC), dicalcium phosphate dihydrate (EM) and theophylline monohydrate (TM)] have been tableted at graded maximum relative densities (rhorel, max) on an eccentric tableting machine. Following that, graded binary mixtures from CAC and EM have been compacted. Finally, the same ratios of CAC and EM have been tableted in a ternary mixture with 20 vol% TM. All compaction cycles have been analyzed by using different data analysis methods. Three-dimensional modeling, conventional determination of the slope of the Heckel function, determination of the elastic recovery during decompression, and calculations according to the pressure-time function were the methods of choice. The results show that the 3D model technique is able to gain the information in one step instead of three different approaches, which is an advantage for formulation development. The results show that this model enables one to better distinguish the compaction properties of mixtures and the interaction of the components in the tablet than 2D models. Furthermore, the information by 3D modeling is more precise since in the slope K of the Heckel-plot (in die) elasticity is included, and in the parameters of the pressure-time function beta and gamma plastic deformation due to pressure is included. The influence of time and pressure on the displacement can now be differentiated.

Multilevel Resistance Programming in Conductive Bridge Resistive Memory

NASA Astrophysics Data System (ADS)

Mahalanabis, Debayan

This work focuses on the existence of multiple resistance states in a type of emerging non-volatile resistive memory device known commonly as Programmable Metallization Cell (PMC) or Conductive Bridge Random Access Memory (CBRAM), which can be important for applications such as multi-bit memory as well as non-volatile logic and neuromorphic computing. First, experimental data from small signal, quasi-static and pulsed mode electrical characterization of such devices are presented which clearly demonstrate the inherent multi-level resistance programmability property in CBRAM devices. A physics based analytical CBRAM compact model is then presented which simulates the ion-transport dynamics and filamentary growth mechanism that causes resistance change in such devices. Simulation results from the model are fitted to experimental dynamic resistance switching characteristics. The model designed using Verilog-a language is computation-efficient and can be integrated with industry standard circuit simulation tools for design and analysis of hybrid circuits involving both CMOS and CBRAM devices. Three main circuit applications for CBRAM devices are explored in this work. Firstly, the susceptibility of CBRAM memory arrays to single event induced upsets is analyzed via compact model simulation and experimental heavy ion testing data that show possibility of both high resistance to low resistance and low resistance to high resistance transitions due to ion strikes. Next, a non-volatile sense amplifier based flip-flop architecture is proposed which can help make leakage power consumption negligible by allowing complete shutdown of power supply while retaining its output data in CBRAM devices. Reliability and energy consumption of the flip-flop circuit for different CBRAM low resistance levels and supply voltage values are analyzed and compared to CMOS designs. Possible extension of this architecture for threshold logic function computation using the CBRAM devices as re-configurable resistive weights is also discussed. Lastly, Spike timing dependent plasticity (STDP) based gradual resistance change behavior in CBRAM device fabricated in back-end-of-line on a CMOS die containing integrate and fire CMOS neuron circuits is demonstrated for the first time which indicates the feasibility of using CBRAM devices as electronic synapses in spiking neural network hardware implementations for non-Boolean neuromorphic computing.

Gravitational waves during inflation from a 5D large-scale repulsive gravity model

NASA Astrophysics Data System (ADS)

Reyes, Luz M.; Moreno, Claudia; Madriz Aguilar, José Edgar; Bellini, Mauricio

2012-10-01

We investigate, in the transverse traceless (TT) gauge, the generation of the relic background of gravitational waves, generated during the early inflationary stage, on the framework of a large-scale repulsive gravity model. We calculate the spectrum of the tensor metric fluctuations of an effective 4D Schwarzschild-de Sitter metric on cosmological scales. This metric is obtained after implementing a planar coordinate transformation on a 5D Ricci-flat metric solution, in the context of a non-compact Kaluza-Klein theory of gravity. We found that the spectrum is nearly scale invariant under certain conditions. One interesting aspect of this model is that it is possible to derive the dynamical field equations for the tensor metric fluctuations, valid not just at cosmological scales, but also at astrophysical scales, from the same theoretical model. The astrophysical and cosmological scales are determined by the gravity-antigravity radius, which is a natural length scale of the model, that indicates when gravity becomes repulsive in nature.

Modeling mechanical cardiopulmonary interactions for virtual environments.

PubMed

Kaye, J M

1997-01-01

We have developed a computer system for modeling mechanical cardiopulmonary behavior in an interactive, 3D virtual environment. The system consists of a compact, scalar description of cardiopulmonary mechanics, with an emphasis on respiratory mechanics, that drives deformable 3D anatomy to simulate mechanical behaviors of and interactions between physiological systems. Such an environment can be used to facilitate exploration of cardiopulmonary physiology, particularly in situations that are difficult to reproduce clinically. We integrate 3D deformable body dynamics with new, formal models of (scalar) cardiorespiratory physiology, associating the scalar physiological variables and parameters with corresponding 3D anatomy. Our approach is amenable to modeling patient-specific circumstances in two ways. First, using CT scan data, we apply semi-automatic methods for extracting and reconstructing the anatomy to use in our simulations. Second, our scalar models are defined in terms of clinically-measurable, patient-specific parameters. This paper describes our approach and presents a sample of results showing normal breathing and acute effects of pneumothoraces.

A model for chromosome organization during the cell cycle in live E. coli.

PubMed

Liu, Yuru; Xie, Ping; Wang, Pengye; Li, Ming; Li, Hui; Li, Wei; Dou, Shuoxing

2015-11-24

Bacterial chromosomal DNA is a highly compact nucleoid. The organization of this nucleoid is poorly understood due to limitations in the methods used to monitor the complexities of DNA organization in live bacteria. Here, we report that circular plasmid DNA is auto-packaged into a uniform dual-toroidal-spool conformation in response to mechanical stress stemming from sharp bending and un-winding by atomic force microscopic analysis. The mechanism underlying this phenomenon was deduced with basic physical principles to explain the auto-packaging behaviour of circular DNA. Based on our observations and previous studies, we propose a dynamic model of how chromosomal DNA in E. coli may be organized during a cell division cycle. Next, we test the model by monitoring the development of HNS clusters in live E. coli during a cell cycle. The results were in close agreement with the model. Furthermore, the model accommodates a majority of the thus-far-discovered remarkable features of nucleoids in vivo.

A model for chromosome organization during the cell cycle in live E. coli

PubMed Central

Liu, Yuru; Xie, Ping; Wang, Pengye; Li, Ming; Li, Hui; Li, Wei; Dou, Shuoxing

2015-01-01

Bacterial chromosomal DNA is a highly compact nucleoid. The organization of this nucleoid is poorly understood due to limitations in the methods used to monitor the complexities of DNA organization in live bacteria. Here, we report that circular plasmid DNA is auto-packaged into a uniform dual-toroidal-spool conformation in response to mechanical stress stemming from sharp bending and un-winding by atomic force microscopic analysis. The mechanism underlying this phenomenon was deduced with basic physical principles to explain the auto-packaging behaviour of circular DNA. Based on our observations and previous studies, we propose a dynamic model of how chromosomal DNA in E. coli may be organized during a cell division cycle. Next, we test the model by monitoring the development of HNS clusters in live E. coli during a cell cycle. The results were in close agreement with the model. Furthermore, the model accommodates a majority of the thus-far-discovered remarkable features of nucleoids in vivo. PMID:26597953

Influence of mantle viscosity structure and mineral grain size on fluid migration pathways in the mantle wedge.

NASA Astrophysics Data System (ADS)

Cerpa, N. G.; Wada, I.; Wilson, C. R.; Spiegelman, M. W.

2016-12-01

We develop a 2D numerical porous flow model that incorporates both grain size distribution and matrix compaction to explore the fluid migration (FM) pathways in the mantle wedge. Melt generation for arc volcanism is thought to be triggered by slab-derived fluids that migrate into the hot overlying mantle and reduce its melting temperature. While the narrow location of the arcs relative to the top of the slab ( 100±30 km) is a robust observation, the release of fluids is predicted to occur over a wide range of depth. Reconciling such observations and predictions remains a challenge for the geodynamic community. Fluid transport by porous flow depends on the permeability of the medium which in turn depends on fluid fraction and mineral grain size. The grain size distribution in the mantle wedge predicted by laboratory derived laws was found to be a possible mechanism to focusing of fluids beneath the arcs [Wada and Behn, 2015]. The viscous resistance of the matrix to the volumetric strain generates compaction pressure that affects fluid flow and can also focus fluids towards the arc [Wilson et al, 2014]. We thus have developed a 2D one-way coupled Darcy's-Stokes flow model (solid flow independent of fluid flow) for the mantle wedge that combines both effects. For the solid flow calculation, we use a kinematic-dynamic approach where the system is driven by the prescribed slab velocity. The solid rheology accounts for both dislocation and diffusion creep and we calculate the grain size distribution following Wada and Behn [2015]. In our fluid flow model, the permeability of the medium is grain size dependent and the matrix bulk viscosity depends on solid shear viscosity and fluid fraction. The fluid influx from the slab is imposed as a boundary condition at the base of the mantle wedge. We solve the discretized governing equations using the software package TerraFERMA. Applying a range of model parameter values, including slab age, slab dip, subduction rate, and fluid influx, we quantify the combined effects of grain size and compaction on fluid flow paths.

Dynamic Decision Making under Uncertainty and Partial Information

DTIC Science & Technology

2013-11-14

integral under the natural filtration generated by the Brownian motions . This compact expression potentially enables us to design sub- optimal penalties...bounds on bermudan option price under jump diffusion processes. Quantitative Finance , 2013. Under review, available at http://arxiv.org/abs/1305.4321... Finance , 19:53 – 71, 2009. [3] D.P. Bertsekas. Dynamic Programming and Optimal Control. Athena Scientific, 4th edition, 2012. [4] D.B. Brown and J.E

Compact instrument for fluorescence image-guided surgery

NASA Astrophysics Data System (ADS)

Wang, Xinghua; Bhaumik, Srabani; Li, Qing; Staudinger, V. Paul; Yazdanfar, Siavash

2010-03-01

Fluorescence image-guided surgery (FIGS) is an emerging technique in oncology, neurology, and cardiology. To adapt intraoperative imaging for various surgical applications, increasingly flexible and compact FIGS instruments are necessary. We present a compact, portable FIGS system and demonstrate its use in cardiovascular mapping in a preclinical model of myocardial ischemia. Our system uses fiber optic delivery of laser diode excitation, custom optics with high collection efficiency, and compact consumer-grade cameras as a low-cost and compact alternative to open surgical FIGS systems. Dramatic size and weight reduction increases flexibility and access, and allows for handheld use or unobtrusive positioning over the surgical field.

V-V compact group of galaxies

NASA Technical Reports Server (NTRS)

Bahcall, N.

1984-01-01

A search for X-ray emission from five compact groups of galaxies with the Einstein Observatory revealed detections from three groups. Soft, extended X-ray emission was observed in Stephan's Quintet which is most likely caused by hot intracluster gas. This provides evidence for dynamical interaction among the group galaxies. X-ray emission from the group Arp 330 may also originate in hot intracluster gas. Stephan's Quintet and Arp 330 have the largest velocity dispersions among the groups studied suggesting a correlation between high velocity and the release (or properties) of hot gas. X-ray emission from Arp 318 may originate in its member galaxies.

Compact surface plasmon resonance biosensor utilizing an injection-molded prism

NASA Astrophysics Data System (ADS)

Chen, How-Foo; Chen, Chih-Han; Chang, Yun-Hsiang; Chuang, Hsin-Yuan

2016-05-01

Targeting at a low cost and accessible diagnostic device in clinical practice, a compact surface plasmon resonance (SPR) biosensor with a large dynamic range in high sensitivity is designed to satisfy commercial needs in food safety, environmental bio-pollution monitoring, and fast clinical diagnosis. The core component integrates an optical coupler, a sample-loading plate, and angle-tuning reflectors is injection-molded as a free-from prism made of plastic optics. This design makes a matching-oil-free operation during operation. The disposability of this low-cost component ensures testing or diagnosis without cross contamination in bio-samples.

Born again universe

NASA Astrophysics Data System (ADS)

Graham, Peter W.; Kaplan, David E.; Rajendran, Surjeet

2018-02-01

We present a class of nonsingular, bouncing cosmologies that evade singularity theorems through the use of vorticity in compact extra dimensions. The vorticity combats the focusing of geodesics during the contracting phase. The construction requires fluids that violate the null energy condition (NEC) in the compact dimensions, where they can be provided by known stable NEC violating sources such as Casimir energy. The four dimensional effective theory contains an NEC violating fluid of Kaluza-Klein excitations of the higher dimensional metric. These spacetime metrics could potentially allow dynamical relaxation to solve the cosmological constant problem. These ideas can also be used to support traversable Lorentzian wormholes.

Ultrafast electron diffraction optimized for studying structural dynamics in thin films and monolayers

PubMed Central

Badali, D. S.; Gengler, R. Y. N.; Miller, R. J. D.

2016-01-01

A compact electron source specifically designed for time-resolved diffraction studies of free-standing thin films and monolayers is presented here. The sensitivity to thin samples is achieved by extending the established technique of ultrafast electron diffraction to the “medium” energy regime (1–10 kV). An extremely compact design, in combination with low bunch charges, allows for high quality diffraction in a lensless geometry. The measured and simulated characteristics of the experimental system reveal sub-picosecond temporal resolution, while demonstrating the ability to produce high quality diffraction patterns from atomically thin samples. PMID:27226978

Compact Storage Ring for an X-Ray Source

NASA Astrophysics Data System (ADS)

Ovchinnikova, L.; Shvedunov, V.; Ivanov, K.

2017-12-01

We propose a new design of a compact storage ring for a source of X-ray radiation on the basis of reverse Thomson scattering of laser radiation by electrons with the energy of 35-50 MeV, which has small number of optical elements and a significant clear space for the placement of a beam injection-extraction system and a RF cavity. The original laser cavity layout has been considered. The ring dynamic aperture after correction of chromaticity and a second-order dispersion function is sufficient for the injection and stable circulation of an electron bunch in the ring.

On Magnetic Dynamos in Thin Accretion Disks around Compact and Young Stars

NASA Technical Reports Server (NTRS)

Stepinski, T. F.

1993-01-01

A variety of geometrically thin accretion disks commonly associated with such astronomical objects as X-ray binaries, cataclysmic variables, and protostars are likely to be seats of MHD dynamo actions. Thin disk geometry and the particular physical environment make accretion disk dynamos different from stellar, planetary, or even galactic dynamos. We discuss those particular features of disk dynamos with emphasis on the difference between protoplanetary disk dynamos and those associated with compact stars. We then describe normal mode solutions for thin disk dynamos and discuss implications for the dynamical behavior of dynamo-magnetized accretion disks.

A fully-online Neuro-Fuzzy model for flow forecasting in basins with limited data

NASA Astrophysics Data System (ADS)

Ashrafi, Mohammad; Chua, Lloyd Hock Chye; Quek, Chai; Qin, Xiaosheng

2017-02-01

Current state-of-the-art online neuro fuzzy models (NFMs) such as DENFIS (Dynamic Evolving Neural-Fuzzy Inference System) have been used for runoff forecasting. Online NFMs adopt a local learning approach and are able to adapt to changes continuously. The DENFIS model however requires upper/lower bound for normalization and also the number of rules increases monotonically. This requirement makes the model unsuitable for use in basins with limited data, since a priori data is required. In order to address this and other drawbacks of current online models, the Generic Self-Evolving Takagi-Sugeno-Kang (GSETSK) is adopted in this study for forecast applications in basins with limited data. GSETSK is a fully-online NFM which updates its structure and parameters based on the most recent data. The model does not require the need for historical data and adopts clustering and rule pruning techniques to generate a compact and up-to-date rule-base. GSETSK was used in two forecast applications, rainfall-runoff (a catchment in Sweden) and river routing (Lower Mekong River) forecasts. Each of these two applications was studied under two scenarios: (i) there is no prior data, and (ii) only limited data is available (1 year for the Swedish catchment and 1 season for the Mekong River). For the Swedish Basin, GSETSK model results were compared to available results from a calibrated HBV (Hydrologiska Byråns Vattenbalansavdelning) model. For the Mekong River, GSETSK results were compared against the URBS (Unified River Basin Simulator) model. Both comparisons showed that results from GSETSK are comparable with the physically based models, which were calibrated with historical data. Thus, even though GSETSK was trained with a very limited dataset in comparison with HBV or URBS, similar results were achieved. Similarly, further comparisons between GSETSK with DENFIS and the RBF (Radial Basis Function) models highlighted further advantages of GSETSK as having a rule-base (compared to opaque RBF) which is more compact, up-to-date and more easily interpretable.