Science.gov

Sample records for dynamic models

  1. Equivalent Dynamic Models.

    PubMed

    Molenaar, Peter C M

    2017-02-16

    Equivalences of two classes of dynamic models for weakly stationary multivariate time series are discussed: dynamic factor models and autoregressive models. It is shown that exploratory dynamic factor models can be rotated, yielding an infinite set of equivalent solutions for any observed series. It also is shown that dynamic factor models with lagged factor loadings are not equivalent to the currently popular state-space models, and that restriction of attention to the latter type of models may yield invalid results. The known equivalent vector autoregressive model types, standard and structural, are given a new interpretation in which they are conceived of as the extremes of an innovating type of hybrid vector autoregressive models. It is shown that consideration of hybrid models solves many problems, in particular with Granger causality testing.

  2. Thermal dynamic modeling study

    NASA Technical Reports Server (NTRS)

    Ojalvo, I. U.

    1972-01-01

    Some thermal dynamic requirements associated with the space shuttle vehicle are reviewed. Pertinent scaling laws are discussed and recommendations are offered regarding the need for conducting reduced-scale dynamic tests of major components at elevated temperatures. Items considered are the development and interpretation of thermal dynamic structural scaling laws, the identification of major related problem areas and a presentation of viable model fabrication, instrumentation, and test procedures.

  3. Modeling Climate Dynamically

    ERIC Educational Resources Information Center

    Walsh, Jim; McGehee, Richard

    2013-01-01

    A dynamical systems approach to energy balance models of climate is presented, focusing on low order, or conceptual, models. Included are global average and latitude-dependent, surface temperature models. The development and analysis of the differential equations and corresponding bifurcation diagrams provides a host of appropriate material for…

  4. Dynamic model for biospeckle.

    PubMed

    Paixão, Crysttian Arantes; da Costa, Antonio Tavares

    2013-06-01

    This paper reports the development of a simple dynamic microscopic model to describe the main features of the phenomenon known as dynamic speckle, or biospeckle. Biospeckle is an interference pattern formed when a biological surface is illuminated with coherent light. The dynamic characteristics of biospeckle have been investigated as possible tools for assessing the quality of biological products. Our model, despite its simplicity, was able to reproduce qualitatively the main features of biospeckle. We were able to correlate variations in a microscopic parameter associated with movement of the particles comprising the organic surface with changes in a macroscopic parameter that measures the change rate of a dynamic interference pattern. We showed that this correlation occurs only within a limited range of parameter microscope values. We also showed how our model was able to describe nonuniform surfaces composed of more than one type of particles.

  5. Dynamic causal modelling revisited.

    PubMed

    Friston, K J; Preller, Katrin H; Mathys, Chris; Cagnan, Hayriye; Heinzle, Jakob; Razi, Adeel; Zeidman, Peter

    2017-02-17

    This paper revisits the dynamic causal modelling of fMRI timeseries by replacing the usual (Taylor) approximation to neuronal dynamics with a neural mass model of the canonical microcircuit. This provides a generative or dynamic causal model of laminar specific responses that can generate haemodynamic and electrophysiological measurements. In principle, this allows the fusion of haemodynamic and (event related or induced) electrophysiological responses. Furthermore, it enables Bayesian model comparison of competing hypotheses about physiologically plausible synaptic effects; for example, does attentional modulation act on superficial or deep pyramidal cells - or both? In this technical note, we describe the resulting dynamic causal model and provide an illustrative application to the attention to visual motion dataset used in previous papers. Our focus here is on how to answer long-standing questions in fMRI; for example, do haemodynamic responses reflect extrinsic (afferent) input from distant cortical regions, or do they reflect intrinsic (recurrent) neuronal activity? To what extent do inhibitory interneurons contribute to neurovascular coupling? What is the relationship between haemodynamic responses and the frequency of induced neuronal activity? This paper does not pretend to answer these questions; rather it shows how they can be addressed using neural mass models of fMRI timeseries.

  6. Dynamical model for thyroid

    NASA Astrophysics Data System (ADS)

    Rokni Lamooki, Gholam Reza; Shirazi, Amir H.; Mani, Ali R.

    2015-05-01

    Thyroid's main chemical reactions are employed to develop a mathematical model. The presented model is based on differential equations where their dynamics reflects many aspects of thyroid's behavior. Our main focus here is the well known, but not well understood, phenomenon so called as Wolff-Chaikoff effect. It is shown that the inhibitory effect of intake iodide on the rate of one single enzyme causes a similar effect as Wolff-Chaikoff. Besides this issue, the presented model is capable of revealing other complex phenomena of thyroid hormones homeostasis.

  7. Modeling Fractal Dynamics

    NASA Astrophysics Data System (ADS)

    West, Bruce J.

    The proper methodology for describing the dynamics of certain complex phenomena and fractal time series is the fractional calculus through the fractional Langevin equation discussed herein and applied in a biomedical context. We show that a fractional operator (derivative or integral) acting on a fractal function, yields another fractal function, allowing us to construct a fractional Langevin equation to describe the evolution of a fractal statistical process, for example, human gait and cerebral blood flow. The goal of this talk is to make clear how certain complex phenomena, such as those that are abundantly present in human physiology, can be faithfully described using dynamical models involving fractional differential stochastic equations. These models are tested against existing data sets and shown to describe time series from complex physiologic phenomena quite well.

  8. Mesoscale ocean dynamics modeling

    SciTech Connect

    mHolm, D.; Alber, M.; Bayly, B.; Camassa, R.; Choi, W.; Cockburn, B.; Jones, D.; Lifschitz, A.; Margolin, L.; Marsden, L.; Nadiga, B.; Poje, A.; Smolarkiewicz, P.; Levermore, D.

    1996-05-01

    This is the final report of a three-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The ocean is a very complex nonlinear system that exhibits turbulence on essentially all scales, multiple equilibria, and significant intrinsic variability. Modeling the ocean`s dynamics at mesoscales is of fundamental importance for long-time-scale climate predictions. A major goal of this project has been to coordinate, strengthen, and focus the efforts of applied mathematicians, computer scientists, computational physicists and engineers (at LANL and a consortium of Universities) in a joint effort addressing the issues in mesoscale ocean dynamics. The project combines expertise in the core competencies of high performance computing and theory of complex systems in a new way that has great potential for improving ocean models now running on the Connection Machines CM-200 and CM-5 and on the Cray T3D.

  9. Contact dynamics math model

    NASA Technical Reports Server (NTRS)

    Glaese, John R.; Tobbe, Patrick A.

    1986-01-01

    The Space Station Mechanism Test Bed consists of a hydraulically driven, computer controlled six degree of freedom (DOF) motion system with which docking, berthing, and other mechanisms can be evaluated. Measured contact forces and moments are provided to the simulation host computer to enable representation of orbital contact dynamics. This report describes the development of a generalized math model which represents the relative motion between two rigid orbiting vehicles. The model allows motion in six DOF for each body, with no vehicle size limitation. The rotational and translational equations of motion are derived. The method used to transform the forces and moments from the sensor location to the vehicles' centers of mass is also explained. Two math models of docking mechanisms, a simple translational spring and the Remote Manipulator System end effector, are presented along with simulation results. The translational spring model is used in an attempt to verify the simulation with compensated hardware in the loop results.

  10. Launch Vehicle Dynamics Demonstrator Model

    NASA Technical Reports Server (NTRS)

    1963-01-01

    Launch Vehicle Dynamics Demonstrator Model. The effect of vibration on launch vehicle dynamics was studied. Conditions included three modes of instability. The film includes close up views of the simulator fuel tank with and without stability control. [Entire movie available on DVD from CASI as Doc ID 20070030984. Contact help@sti.nasa.gov

  11. Generative models of conformational dynamics.

    PubMed

    Langmead, Christopher James

    2014-01-01

    Atomistic simulations of the conformational dynamics of proteins can be performed using either Molecular Dynamics or Monte Carlo procedures. The ensembles of three-dimensional structures produced during simulation can be analyzed in a number of ways to elucidate the thermodynamic and kinetic properties of the system. The goal of this chapter is to review both traditional and emerging methods for learning generative models from atomistic simulation data. Here, the term 'generative' refers to a model of the joint probability distribution over the behaviors of the constituent atoms. In the context of molecular modeling, generative models reveal the correlation structure between the atoms, and may be used to predict how the system will respond to structural perturbations. We begin by discussing traditional methods, which produce multivariate Gaussian models. We then discuss GAMELAN (GRAPHICAL MODELS OF ENERGY LANDSCAPES), which produces generative models of complex, non-Gaussian conformational dynamics (e.g., allostery, binding, folding, etc.) from long timescale simulation data.

  12. SSME structural dynamic model development

    NASA Technical Reports Server (NTRS)

    Foley, M. J.; Tilley, D. M.; Welch, C. T.

    1983-01-01

    A mathematical model of the Space Shuttle Main Engine (SSME) as a complete assembly, with detailed emphasis on LOX and High Fuel Turbopumps is developed. The advantages of both complete engine dynamics, and high fidelity modeling are incorporated. Development of this model, some results, and projected applications are discussed.

  13. Predictive models of forest dynamics.

    PubMed

    Purves, Drew; Pacala, Stephen

    2008-06-13

    Dynamic global vegetation models (DGVMs) have shown that forest dynamics could dramatically alter the response of the global climate system to increased atmospheric carbon dioxide over the next century. But there is little agreement between different DGVMs, making forest dynamics one of the greatest sources of uncertainty in predicting future climate. DGVM predictions could be strengthened by integrating the ecological realities of biodiversity and height-structured competition for light, facilitated by recent advances in the mathematics of forest modeling, ecological understanding of diverse forest communities, and the availability of forest inventory data.

  14. COLD-SAT dynamic model

    NASA Technical Reports Server (NTRS)

    Adams, Neil S.; Bollenbacher, Gary

    1992-01-01

    This report discusses the development and underlying mathematics of a rigid-body computer model of a proposed cryogenic on-orbit liquid depot storage, acquisition, and transfer spacecraft (COLD-SAT). This model, referred to in this report as the COLD-SAT dynamic model, consists of both a trajectory model and an attitudinal model. All disturbance forces and torques expected to be significant for the actual COLD-SAT spacecraft are modeled to the required degree of accuracy. Control and experimental thrusters are modeled, as well as fluid slosh. The model also computes microgravity disturbance accelerations at any specified point in the spacecraft. The model was developed by using the Boeing EASY5 dynamic analysis package and will run on Apollo, Cray, and other computing platforms.

  15. Dynamic Modeling of ALS Systems

    NASA Technical Reports Server (NTRS)

    Jones, Harry

    2002-01-01

    The purpose of dynamic modeling and simulation of Advanced Life Support (ALS) systems is to help design them. Static steady state systems analysis provides basic information and is necessary to guide dynamic modeling, but static analysis is not sufficient to design and compare systems. ALS systems must respond to external input variations and internal off-nominal behavior. Buffer sizing, resupply scheduling, failure response, and control system design are aspects of dynamic system design. We develop two dynamic mass flow models and use them in simulations to evaluate systems issues, optimize designs, and make system design trades. One model is of nitrogen leakage in the space station, the other is of a waste processor failure in a regenerative life support system. Most systems analyses are concerned with optimizing the cost/benefit of a system at its nominal steady-state operating point. ALS analysis must go beyond the static steady state to include dynamic system design. All life support systems exhibit behavior that varies over time. ALS systems must respond to equipment operating cycles, repair schedules, and occasional off-nominal behavior or malfunctions. Biological components, such as bioreactors, composters, and food plant growth chambers, usually have operating cycles or other complex time behavior. Buffer sizes, material stocks, and resupply rates determine dynamic system behavior and directly affect system mass and cost. Dynamic simulation is needed to avoid the extremes of costly over-design of buffers and material reserves or system failure due to insufficient buffers and lack of stored material.

  16. Aircraft Dynamic Modeling in Turbulence

    NASA Technical Reports Server (NTRS)

    Morelli, Eugene A.; Cunninham, Kevin

    2012-01-01

    A method for accurately identifying aircraft dynamic models in turbulence was developed and demonstrated. The method uses orthogonal optimized multisine excitation inputs and an analytic method for enhancing signal-to-noise ratio for dynamic modeling in turbulence. A turbulence metric was developed to accurately characterize the turbulence level using flight measurements. The modeling technique was demonstrated in simulation, then applied to a subscale twin-engine jet transport aircraft in flight. Comparisons of modeling results obtained in turbulent air to results obtained in smooth air were used to demonstrate the effectiveness of the approach.

  17. Model describes subsea control dynamics

    SciTech Connect

    Not Available

    1988-02-01

    A mathematical model of the hydraulic control systems for subsea completions and their umbilicals has been developed and applied successfully to Jabiru and Challis field production projects in the Timor Sea. The model overcomes the limitations of conventional linear steady state models and yields for the hydraulic system an accurate description of its dynamic response, including the valve shut-in times and the pressure transients. Results of numerical simulations based on the model are in good agreement with measurements of the dynamic response of the tree valves and umbilicals made during land testing.

  18. Dynamic Eye Model.

    ERIC Educational Resources Information Center

    Journal of Science and Mathematics Education in Southeast Asia, 1981

    1981-01-01

    Instructions (with diagrams and parts list) are provided for constructing an eye model with a pliable lens made from a plastic bottle which can vary its convexity to accommodate changing positions of an object being viewed. Also discusses concepts which the model can assist in developing. (Author/SK)

  19. Model of THz Magnetization Dynamics

    PubMed Central

    Bocklage, Lars

    2016-01-01

    Magnetization dynamics can be coherently controlled by THz laser excitation, which can be applied in ultrafast magnetization control and switching. Here, transient magnetization dynamics are calculated for excitation with THz magnetic field pulses. We use the ansatz of Smit and Beljers, to formulate dynamic properties of the magnetization via partial derivatives of the samples free energy density, and extend it to solve the Landau-Lifshitz-equation to obtain the THz transients of the magnetization. The model is used to determine the magnetization response to ultrafast multi- and single-cycle THz pulses. Control of the magnetization trajectory by utilizing the THz pulse shape and polarization is demonstrated. PMID:26956997

  20. Global/Local Dynamic Models

    SciTech Connect

    Pfeffer, A; Das, S; Lawless, D; Ng, B

    2006-10-10

    Many dynamic systems involve a number of entities that are largely independent of each other but interact with each other via a subset of state variables. We present global/local dynamic models (GLDMs) to capture these kinds of systems. In a GLDM, the state of an entity is decomposed into a globally influenced state that depends on other entities, and a locally influenced state that depends only on the entity itself. We present an inference algorithm for GLDMs called global/local particle filtering, that introduces the principle of reasoning globally about global dynamics and locally about local dynamics. We have applied GLDMs to an asymmetric urban warfare environment, in which enemy units form teams to attack important targets, and the task is to detect such teams as they form. Experimental results for this application show that global/local particle filtering outperforms ordinary particle filtering and factored particle filtering.

  1. Generative Models of Conformational Dynamics

    PubMed Central

    Langmead, Christopher James

    2014-01-01

    Atomistic simulations of the conformational dynamics of proteins can be performed using either Molecular Dynamics or Monte Carlo procedures. The ensembles of three-dimensional structures produced during simulation can be analyzed in a number of ways to elucidate the thermodynamic and kinetic properties of the system. The goal of this chapter is to review both traditional and emerging methods for learning generative models from atomistic simulation data. Here, the term ‘generative’ refers to a model of the joint probability distribution over the behaviors of the constituent atoms. In the context of molecular modeling, generative models reveal the correlation structure between the atoms, and may be used to predict how the system will respond to structural perturbations. We begin by discussing traditional methods, which produce multivariate Gaussian models. We then discuss GAMELAN (GrAphical Models of Energy LANdscapes), which produces generative models of complex, non-Gaussian conformational dynamics (e.g., allostery, binding, folding, etc) from long timescale simulation data. PMID:24446358

  2. The dynamics of coastal models

    USGS Publications Warehouse

    Hearn, Clifford J.

    2008-01-01

    Coastal basins are defined as estuaries, lagoons, and embayments. This book deals with the science of coastal basins using simple models, many of which are presented in either analytical form or Microsoft Excel or MATLAB. The book introduces simple hydrodynamics and its applications, from the use of simple box and one-dimensional models to flow over coral reefs. The book also emphasizes models as a scientific tool in our understanding of coasts, and introduces the value of the most modern flexible mesh combined wave-current models. Examples from shallow basins around the world illustrate the wonders of the scientific method and the power of simple dynamics. This book is ideal for use as an advanced textbook for graduate students and as an introduction to the topic for researchers, especially those from other fields of science needing a basic understanding of the basic ideas of the dynamics of coastal basins.

  3. Predictive models of battle dynamics

    NASA Astrophysics Data System (ADS)

    Jelinek, Jan

    2001-09-01

    The application of control and game theories to improve battle planning and execution requires models, which allow military strategists and commanders to reliably predict the expected outcomes of various alternatives over a long horizon into the future. We have developed probabilistic battle dynamics models, whose building blocks in the form of Markov chains are derived from the first principles, and applied them successfully in the design of the Model Predictive Task Commander package. This paper introduces basic concepts of our modeling approach and explains the probability distributions needed to compute the transition probabilities of the Markov chains.

  4. Observability in dynamic evolutionary models.

    PubMed

    López, I; Gámez, M; Carreño, R

    2004-02-01

    In the paper observability problems are considered in basic dynamic evolutionary models for sexual and asexual populations. Observability means that from the (partial) knowledge of certain phenotypic characteristics the whole evolutionary process can be uniquely recovered. Sufficient conditions are given to guarantee observability for both sexual and asexual populations near an evolutionarily stable state.

  5. Dynamical Modelling of Meteoroid Streams

    NASA Astrophysics Data System (ADS)

    Clark, David; Wiegert, P. A.

    2012-10-01

    Accurate simulations of meteoroid streams permit the prediction of stream interaction with Earth, and provide a measure of risk to Earth satellites and interplanetary spacecraft. Current cometary ejecta and meteoroid stream models have been somewhat successful in predicting some stream observations, but have required questionable assumptions and significant simplifications. Extending on the approach of Vaubaillon et al. (2005)1, we model dust ejection from the cometary nucleus, and generate sample particles representing bins of distinct dynamical evolution-regulating characteristics (size, density, direction, albedo). Ephemerides of the sample particles are integrated and recorded for later assignment of frequency based on model parameter changes. To assist in model analysis we are developing interactive software to permit the “turning of knobs” of model parameters, allowing for near-real-time 3D visualization of resulting stream structure. With this tool, we will revisit prior assumptions made, and will observe the impact of introducing non-uniform cometary surface attributes and temporal activity. The software uses a single model definition and implementation throughout model verification, sample particle bin generation and integration, and analysis. It supports the adjustment with feedback of both independent and independent model values, with the intent of providing an interface supporting multivariate analysis. Propagations of measurement uncertainties and model parameter precisions are tracked rigorously throughout. We maintain a separation of the model itself from the abstract concepts of model definition, parameter manipulation, and real-time analysis and visualization. Therefore we are able to quickly adapt to fundamental model changes. It is hoped the tool will also be of use in other solar system dynamics problems. 1 Vaubaillon, J.; Colas, F.; Jorda, L. (2005) A new method to predict meteor showers. I. Description of the model. Astronomy and

  6. Dynamic Model of Mesoscale Eddies

    NASA Astrophysics Data System (ADS)

    Dubovikov, Mikhail S.

    2003-04-01

    Oceanic mesoscale eddies which are analogs of well known synoptic eddies (cyclones and anticyclones), are studied on the basis of the turbulence model originated by Dubovikov (Dubovikov, M.S., "Dynamical model of turbulent eddies", Int. J. Mod. Phys.B7, 4631-4645 (1993).) and further developed by Canuto and Dubovikov (Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: I. General formalism", Phys. Fluids8, 571-586 (1996a) (CD96a); Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: II. Sheardriven flows", Phys. Fluids8, 587-598 (1996b) (CD96b); Canuto, V.M., Dubovikov, M.S., Cheng, Y. and Dienstfrey, A., "A dynamical model for turbulence: III. Numerical results", Phys. Fluids8, 599-613 (1996c)(CD96c); Canuto, V.M., Dubovikov, M.S. and Dienstfrey, A., "A dynamical model for turbulence: IV. Buoyancy-driven flows", Phys. Fluids9, 2118-2131 (1997a) (CD97a); Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: V. The effect of rotation", Phys. Fluids9, 2132-2140 (1997b) (CD97b); Canuto, V.M., Dubovikov, M.S. and Wielaard, D.J., "A dynamical model for turbulence: VI. Two dimensional turbulence", Phys. Fluids9, 2141-2147 (1997c) (CD97c); Canuto, V.M. and Dubovikov, M.S., "Physical regimes and dimensional structure of rotating turbulence", Phys. Rev. Lett. 78, 666-669 (1997d) (CD97d); Canuto, V.M., Dubovikov, M.S. and Dienstfrey, A., "Turbulent convection in a spectral model", Phys. Rev. Lett. 78, 662-665 (1997e) (CD97e); Canuto, V.M. and Dubovikov, M.S., "A new approach to turbulence", Int. J. Mod. Phys.12, 3121-3152 (1997f) (CD97f); Canuto, V.M. and Dubovikov, M.S., "Two scaling regimes for rotating Raleigh-Benard convection", Phys. Rev. Letters78, 281-284, (1998) (CD98); Canuto, V.M. and Dubovikov, M.S., "A dynamical model for turbulence: VII. The five invariants for shear driven flows", Phys. Fluids11, 659-664 (1999a) (CD99a); Canuto, V.M., Dubovikov, M.S. and Yu, G., "A dynamical model for turbulence: VIII. IR and UV

  7. Dynamical modelling of meteoroid streams

    NASA Astrophysics Data System (ADS)

    Clark, D. L.; Wiegert, P. A.

    2014-07-01

    Accurate simulations of meteoroid streams permit the prediction of stream interaction with Earth, and provide a measure of risk to Earth satellites and interplanetary spacecraft. Current cometary ejecta and meteoroid stream models have been somewhat successful in predicting some stream observations, but have required significant assumptions and simplifications. Extending on the approach of Vaubaillon et al. 2005, we model dust ejection from the cometary nucleus, and generate sample particles representing bins of distinct dynamical evolution-regulating characteristics (size, density, direction, albedo). Ephemerides of the sample particles are integrated and recorded for later assignment of weights based on model parameter changes. To assist in model analysis we are developing interactive software to permit the "turning of knobs" of model parameters, allowing for near-real-time 3D visualization of resulting stream structure. Using the tool, we will revisit prior assumptions made, and will observe the impact of introducing non-uniform and time-variant cometary surface attributes and processes.

  8. Towards a Dynamic DES model

    NASA Astrophysics Data System (ADS)

    Subbareddy, Pramod; Candler, Graham

    2009-11-01

    Hybrid RANS/LES methods are being increasingly used for turbulent flow simulations in complex geometries. Spalart's detached eddy simulation (DES) model is one of the more popular ones. We are interested in examining the behavior of the Spalart-Allmaras (S-A) Detached Eddy Simulation (DES) model in its ``LES mode.'' The role of the near-wall functions present in the equations is analyzed and an explicit analogy between the S-A and a one-equation LES model based on the sub-grid kinetic energy is presented. A dynamic version of the S-A DES model is proposed based on this connection. Validation studies and results from DES and LES applications will be presented and the effect of the proposed modification will be discussed.

  9. Modeling Catastrophic Barrier Island Dynamics

    NASA Astrophysics Data System (ADS)

    Whitley, J. W.; McNamara, D.

    2012-12-01

    Barrier islands, thin strips of sand lying parallel to the mainland coastline, along the U.S. Atlantic and Gulf Coasts appear to have maintained their form for thousands of years in the face of rising sea level. The mechanisms that allow barrier islands to remain robust are transport of sediment from the ocean side of barriers to the top and backside during storms, termed island overwash, and the growth and alongshore propagation of tidal deltas near barrier island inlets. Dynamically these processes provide the necessary feedbacks to maintain a barrier island in an attractor that withstands rising sea level within a phase space of barrier island geometrical characteristics. Current barrier island configurations along the Atlantic and Gulf coasts exist among a wide range of storm climate and underlying geologic conditions and therefore the environment that forces overwash and tidal delta dynamics varies considerably. It has been suggested that barrier islands in certain locations such as those between Avon and Buxton (losing 76% of island width since 1852) and Chandeleur islands (losing 85% of its surface area since 2005) along the Atlantic and Gulf coasts, respectively, may be subject to a catastrophic shift in barrier island attractor states - more numerous inlets cutting barriers in some locations and the complete disappearance of barrier islands in other locations. In contrast to common models for barrier islands that neglect storm dynamics and often only consider cross-shore response, we use an alongshore extended model for barrier island dynamics including beach erosion, island overwash and inlet cutting during storms, and beach accretion, tidal delta growth and dune and vegetation growth between storms to explore the response of barrier islands to a wide range of environmental forcing. Results will be presented that show how barrier island attractor states are altered with variations in the rate of sea level rise, storminess, and underlying geology. We will

  10. Data modeling of network dynamics

    NASA Astrophysics Data System (ADS)

    Jaenisch, Holger M.; Handley, James W.; Faucheux, Jeffery P.; Harris, Brad

    2004-01-01

    This paper highlights Data Modeling theory and its use for text data mining as a graphical network search engine. Data Modeling is then used to create a real-time filter capable of monitoring network traffic down to the port level for unusual dynamics and changes in business as usual. This is accomplished in an unsupervised fashion without a priori knowledge of abnormal characteristics. Two novel methods for converting streaming binary data into a form amenable to graphics based search and change detection are introduced. These techniques are then successfully applied to 1999 KDD Cup network attack data log-on sessions to demonstrate that Data Modeling can detect attacks without prior training on any form of attack behavior. Finally, two new methods for data encryption using these ideas are proposed.

  11. Mathematical Modeling of Wildfire Dynamics

    NASA Astrophysics Data System (ADS)

    Del Bene, Kevin; Drew, Donald

    2012-11-01

    Wildfires have been a long-standing problem in today's society. In this paper, we derive and solve a fluid dynamics model to study a specific type of wildfire, namely, a two dimensional flow around a rising plume above a concentrated heat source, modeling a fire line. This flow assumes a narrow plume of hot gas rising and entraining the surrounding air. The surrounding air is assumed to have constant density and is irrotational far from the fire line. The flow outside the plume is described by a Biot-Savart integral with jump conditions across the position of the plume. The plume model describes the unsteady evolution of the mass, momentum, energy, and vorticity inside the plume, with sources derived to model mixing in the style of Morton, et al. 1956]. The fire is then modeled using a conservation derivation, allowing the fire to propagate, coupling back to the plume model. The results show that this model is capable of capturing the complex interaction of the plume with the surrounding air and fuel layer. Funded by NSF GRFP.

  12. Modeling the Dynamics of Snags.

    PubMed

    Morrison, Michael L; Raphael, Martin G

    1993-05-01

    Many wildlife species required standing dead trees (i.e., snags) as part of their habitat. Therefore, the ability to predict future density, distribution, and condition of snags can assist resource managers in making land-use decisions. Here we present methods for modeling the dynamics of snags using data from a 10-yr study on the rates of decay, falling, and recruitment of snags on burned and unburned plots in the Sierra Nevada, California. Snags (all species) in advanced stages of decay usually fell within 5 yr, and snags created by fire decayed rapidly and fell quicker (within 10 yr) than those on unburned plots. Pine (Pinus spp.) snags decayed more rapidly than fir (Abies spp.). Although there was an overall net increase in snag density on unburned plots, most of this increase was in the smaller (>13-38 cm diameter at breast height [dbh]) size classes; there was a net decrease in the larger (>38 cm dbh) snags preferred by many birds for nesting and feeding. Overall, snags remained standing the longest that were larger in diameter, shorter in height, less decayed, fir rather than pine, and lacking tops. A Leslie matrix model of snag dynamics predicted changes in snag decay and density only when adjusted for the specific environmental factors(s) causing initial tree mortality. Many snags are created by episodic events, such as fire, disease, drought, and insects. Models of snag dynamics must include the species and condition of trees becoming snags, as well as the factor(s) causing the tree to die. Forest managers must consider this episodic creation of snags when developing snag-management guidelines, and when planning tree-salvage programs based on short-term inventories.

  13. Bayesian Estimation of Categorical Dynamic Factor Models

    ERIC Educational Resources Information Center

    Zhang, Zhiyong; Nesselroade, John R.

    2007-01-01

    Dynamic factor models have been used to analyze continuous time series behavioral data. We extend 2 main dynamic factor model variations--the direct autoregressive factor score (DAFS) model and the white noise factor score (WNFS) model--to categorical DAFS and WNFS models in the framework of the underlying variable method and illustrate them with…

  14. Characterizing and modeling citation dynamics.

    PubMed

    Eom, Young-Ho; Fortunato, Santo

    2011-01-01

    Citation distributions are crucial for the analysis and modeling of the activity of scientists. We investigated bibliometric data of papers published in journals of the American Physical Society, searching for the type of function which best describes the observed citation distributions. We used the goodness of fit with Kolmogorov-Smirnov statistics for three classes of functions: log-normal, simple power law and shifted power law. The shifted power law turns out to be the most reliable hypothesis for all citation networks we derived, which correspond to different time spans. We find that citation dynamics is characterized by bursts, usually occurring within a few years since publication of a paper, and the burst size spans several orders of magnitude. We also investigated the microscopic mechanisms for the evolution of citation networks, by proposing a linear preferential attachment with time dependent initial attractiveness. The model successfully reproduces the empirical citation distributions and accounts for the presence of citation bursts as well.

  15. Characterizing and Modeling Citation Dynamics

    PubMed Central

    Eom, Young-Ho; Fortunato, Santo

    2011-01-01

    Citation distributions are crucial for the analysis and modeling of the activity of scientists. We investigated bibliometric data of papers published in journals of the American Physical Society, searching for the type of function which best describes the observed citation distributions. We used the goodness of fit with Kolmogorov-Smirnov statistics for three classes of functions: log-normal, simple power law and shifted power law. The shifted power law turns out to be the most reliable hypothesis for all citation networks we derived, which correspond to different time spans. We find that citation dynamics is characterized by bursts, usually occurring within a few years since publication of a paper, and the burst size spans several orders of magnitude. We also investigated the microscopic mechanisms for the evolution of citation networks, by proposing a linear preferential attachment with time dependent initial attractiveness. The model successfully reproduces the empirical citation distributions and accounts for the presence of citation bursts as well. PMID:21966387

  16. Dynamical model for competing opinions

    NASA Astrophysics Data System (ADS)

    Souza, S. R.; Gonçalves, S.

    2012-05-01

    We propose an opinion model based on agents located at the vertices of a regular lattice. Each agent has an independent opinion (among an arbitrary, but fixed, number of choices) and its own degree of conviction. The latter changes every time two agents which have different opinions interact with each other. The dynamics leads to size distributions of clusters (made up of agents which have the same opinion and are located at contiguous spatial positions) which follow a power law, as long as the range of the interaction between the agents is not too short; i.e., the system self-organizes into a critical state. Short range interactions lead to an exponential cutoff in the size distribution and to spatial correlations which cause agents which have the same opinion to be closely grouped. When the diversity of opinions is restricted to two, a nonconsensus dynamic is observed, with unequal population fractions, whereas consensus is reached if the agents are also allowed to interact with those located far from them. The individual agents' convictions, the preestablished interaction range, and the locality of the interaction between a pair of agents (their neighborhood has no effect on the interaction) are the main characteristics which distinguish our model from previous ones.

  17. Dynamical model of surrogate reactions

    SciTech Connect

    Aritomo, Y.; Chiba, S.; Nishio, K.

    2011-08-15

    A new dynamical model is developed to describe the whole process of surrogate reactions: Transfer of several nucleons at an initial stage, thermal equilibration of residues leading to washing out of shell effects, and decay of populated compound nuclei are treated in a unified framework. Multidimensional Langevin equations are employed to describe time evolution of collective coordinates with a time-dependent potential energy surface corresponding to different stages of surrogate reactions. The new model is capable of calculating spin distributions of the compound nuclei, one of the most important quantities in the surrogate technique. Furthermore, various observables of surrogate reactions can be calculated, for example, energy and angular distribution of ejectile and mass distributions of fission fragments. These features are important to assess validity of the proposed model itself, to understand mechanisms of the surrogate reactions, and to determine unknown parameters of the model. It is found that spin distributions of compound nuclei produced in {sup 18}O+{sup 238}U{yields}{sup 16}O+{sup 240}*U and {sup 18}O+{sup 236}U{yields}{sup 16}O+{sup 238}*U reactions are equivalent and much less than 10({h_bar}/2{pi}) and therefore satisfy conditions proposed by Chiba and Iwamoto [Phys. Rev. C 81, 044604 (2010)] if they are used as a pair in the surrogate ratio method.

  18. Dynamical Modeling of Mars' Paleoclimate

    NASA Technical Reports Server (NTRS)

    Richardson, Mark I.

    2004-01-01

    This report summarizes work undertaken under a one-year grant from the NASA Mars Fundamental Research Program. The goal of the project was to initiate studies of the response of the Martian climate to changes in planetary obliquity and orbital elements. This work was undertaken with a three-dimensional numerical climate model based on the Geophysical Fluid Dynamics Laboratory (GFDL) Skyhi General Circulation Model (GCM). The Mars GCM code was adapted to simulate various obliquity and orbital parameter states. Using a version of the model with a basic water cycle (ice caps, vapor, and clouds), we examined changes in atmospheric water abundances and in the distribution of water ice sheets on the surface. This work resulted in a paper published in the Journal of Geophysical Research - Planets. In addition, the project saw the initial incorporation of a regolith water transport and storage scheme into the model. This scheme allows for interaction between water in the pores of the near subsurface (<3m) and the atmosphere. This work was not complete by the end of the one-year grant, but is now continuing within the auspices of a three-year grant of the same title awarded by the Mars Fundamental Research Program in late 2003.

  19. Modeling sandhill crane population dynamics

    USGS Publications Warehouse

    Johnson, D.H.

    1979-01-01

    The impact of sport hunting on the Central Flyway population of sandhill cranes (Grus canadensis) has been a subject of controversy for several years. A recent study (Buller 1979) presented new and important information on sandhill crane population dynamics. The present report is intended to incorporate that and other information into a mathematical model for the purpose of assessing the long-range impact of hunting on the population of sandhill cranes.The model is a simple deterministic system that embodies density-dependent rates of survival and recruitment. The model employs four kinds of data: (1) spring population size of sandhill cranes, estimated from aerial surveys to be between 250,000 and 400,000 birds; (2) age composition in fall, estimated for 1974-76 to be 11.3% young; (3) annual harvest of cranes, estimated from a variety of sources to be about 5 to 7% of the spring population; and (4) age composition of harvested cranes, which was difficult to estimate but suggests that immatures were 2 to 4 times as vulnerable to hunting as adults.Because the true nature of sandhill crane population dynamics remains so poorly understood, it was necessary to try numerous (768 in all) combinations of survival and recruitment functions, and focus on the relatively few (37) that yielded population sizes and age structures comparable to those extant in the real population. Hunting was then applied to those simulated populations. In all combinations, hunting resulted in a lower asymptotic crane population, the decline ranging from 5 to 54%. The median decline was 22%, which suggests that a hunted sandhill crane population might be about three-fourths as large as it would be if left unhunted. Results apply to the aggregate of the three subspecies in the Central Flyway; individual subspecies or populations could be affected to a greater or lesser degree.

  20. SSME structural dynamic model development

    NASA Technical Reports Server (NTRS)

    Foley, Michael J.

    1989-01-01

    The high pressure fuel turbopump (HPFTP) is a major component of the Space Shuttle Main Engine (SSME) powerhead. The device is a three stage centrifugal pump that is directly driven by a two stage hot gas turbine. The purpose of the pump is to deliver fuel (liquid hydrogen) from the low pressure fuel turbopump (LPFTP) through the main fuel valve (MFV) to the thrust chamber coolant circuits. In doing so, the pump pressurizes the fuel from an inlet pressure of approximately 178 psi to a discharge pressure of over 6000 psi. At full power level (FPL), the pump rotates at a speed of over 37,000 rpm while generating approximately 77,000 horsepower. Obviously, a pump failure at these speeds and power levels could jeopardize the mission. Results are summarized for work in which the solutions obtained from analytical models of the fuel turbopump impellers are compared with the results obtained from dynamic tests.

  1. Preliminary shuttle structural dynamics modeling design study

    NASA Technical Reports Server (NTRS)

    1972-01-01

    The design and development of a structural dynamics model of the space shuttle are discussed. The model provides for early study of structural dynamics problems, permits evaluation of the accuracy of the structural and hydroelastic analysis methods used on test vehicles, and provides for efficiently evaluating potential cost savings in structural dynamic testing techniques. The discussion is developed around the modes in which major input forces and responses occur and the significant structural details in these modes.

  2. Comparative dynamics in a health investment model.

    PubMed

    Eisenring, C

    1999-10-01

    The method of comparative dynamics fully exploits the inter-temporal structure of optimal control models. I derive comparative dynamic results in a simplified demand for health model. The effect of a change in the depreciation rate on the optimal paths for health capital and investment in health is studied by use of a phase diagram.

  3. The Challenges to Coupling Dynamic Geospatial Models

    SciTech Connect

    Goldstein, N

    2006-06-23

    Many applications of modeling spatial dynamic systems focus on a single system and a single process, ignoring the geographic and systemic context of the processes being modeled. A solution to this problem is the coupled modeling of spatial dynamic systems. Coupled modeling is challenging for both technical reasons, as well as conceptual reasons. This paper explores the benefits and challenges to coupling or linking spatial dynamic models, from loose coupling, where information transfer between models is done by hand, to tight coupling, where two (or more) models are merged as one. To illustrate the challenges, a coupled model of Urbanization and Wildfire Risk is presented. This model, called Vesta, was applied to the Santa Barbara, California region (using real geospatial data), where Urbanization and Wildfires occur and recur, respectively. The preliminary results of the model coupling illustrate that coupled modeling can lead to insight into the consequences of processes acting on their own.

  4. Hydration dynamics near a model protein surface

    SciTech Connect

    Russo, Daniela; Hura, Greg; Head-Gordon, Teresa

    2003-09-01

    The evolution of water dynamics from dilute to very high concentration solutions of a prototypical hydrophobic amino acid with its polar backbone, N-acetyl-leucine-methylamide (NALMA), is studied by quasi-elastic neutron scattering and molecular dynamics simulation for both the completely deuterated and completely hydrogenated leucine monomer. We observe several unexpected features in the dynamics of these biological solutions under ambient conditions. The NALMA dynamics shows evidence of de Gennes narrowing, an indication of coherent long timescale structural relaxation dynamics. The translational water dynamics are analyzed in a first approximation with a jump diffusion model. At the highest solute concentrations, the hydration water dynamics is significantly suppressed and characterized by a long residential time and a slow diffusion coefficient. The analysis of the more dilute concentration solutions takes into account the results of the 2.0M solution as a model of the first hydration shell. Subtracting the first hydration layer based on the 2.0M spectra, the translational diffusion dynamics is still suppressed, although the rotational relaxation time and residential time are converged to bulk-water values. Molecular dynamics analysis shows spatially heterogeneous dynamics at high concentration that becomes homogeneous at more dilute concentrations. We discuss the hydration dynamics results of this model protein system in the context of glassy systems, protein function, and protein-protein interfaces.

  5. Connecting micro dynamics and population distributions in system dynamics models.

    PubMed

    Fallah-Fini, Saeideh; Rahmandad, Hazhir; Chen, Hsin-Jen; Xue, Hong; Wang, Youfa

    2013-01-01

    Researchers use system dynamics models to capture the mean behavior of groups of indistinguishable population elements (e.g., people) aggregated in stock variables. Yet, many modeling problems require capturing the heterogeneity across elements with respect to some attribute(s) (e.g., body weight). This paper presents a new method to connect the micro-level dynamics associated with elements in a population with the macro-level population distribution along an attribute of interest without the need to explicitly model every element. We apply the proposed method to model the distribution of Body Mass Index and its changes over time in a sample population of American women obtained from the U.S. National Health and Nutrition Examination Survey. Comparing the results with those obtained from an individual-based model that captures the same phenomena shows that our proposed method delivers accurate results with less computation than the individual-based model.

  6. Connecting micro dynamics and population distributions in system dynamics models

    PubMed Central

    Rahmandad, Hazhir; Chen, Hsin-Jen; Xue, Hong; Wang, Youfa

    2014-01-01

    Researchers use system dynamics models to capture the mean behavior of groups of indistinguishable population elements (e.g., people) aggregated in stock variables. Yet, many modeling problems require capturing the heterogeneity across elements with respect to some attribute(s) (e.g., body weight). This paper presents a new method to connect the micro-level dynamics associated with elements in a population with the macro-level population distribution along an attribute of interest without the need to explicitly model every element. We apply the proposed method to model the distribution of Body Mass Index and its changes over time in a sample population of American women obtained from the U.S. National Health and Nutrition Examination Survey. Comparing the results with those obtained from an individual-based model that captures the same phenomena shows that our proposed method delivers accurate results with less computation than the individual-based model. PMID:25620842

  7. Chaotic dynamics in a simple dynamical green ocean plankton model

    NASA Astrophysics Data System (ADS)

    Cropp, Roger; Moroz, Irene M.; Norbury, John

    2014-11-01

    The exchange of important greenhouse gases between the ocean and atmosphere is influenced by the dynamics of near-surface plankton ecosystems. Marine plankton ecosystems are modified by climate change creating a feedback mechanism that could have significant implications for predicting future climates. The collapse or extinction of a plankton population may push the climate system across a tipping point. Dynamic green ocean models (DGOMs) are currently being developed for inclusion into climate models to predict the future state of the climate. The appropriate complexity of the DGOMs used to represent plankton processes is an ongoing issue, with models tending to become more complex, with more complicated dynamics, and an increasing propensity for chaos. We consider a relatively simple (four-population) DGOM of phytoplankton, zooplankton, bacteria and zooflagellates where the interacting plankton populations are connected by a single limiting nutrient. Chaotic solutions are possible in this 4-dimensional model for plankton population dynamics, as well as in a reduced 3-dimensional model, as we vary two of the key mortality parameters. Our results show that chaos is robust to the variation of parameters as well as to the presence of environmental noise, where the attractor of the more complex system is more robust than the attractor of its simplified equivalent. We find robust chaotic dynamics in low trophic order ecological models, suggesting that chaotic dynamics might be ubiquitous in the more complex models, but this is rarely observed in DGOM simulations. The physical equations of DGOMs are well understood and are constrained by conservation principles, but the ecological equations are not well understood, and generally have no explicitly conserved quantities. This work, in the context of the paucity of the empirical and theoretical bases upon which DGOMs are constructed, raises the interesting question of whether DGOMs better represent reality if they include

  8. Very Large System Dynamics Models - Lessons Learned

    SciTech Connect

    Jacob J. Jacobson; Leonard Malczynski

    2008-10-01

    This paper provides lessons learned from developing several large system dynamics (SD) models. System dynamics modeling practice emphasize the need to keep models small so that they are manageable and understandable. This practice is generally reasonable and prudent; however, there are times that large SD models are necessary. This paper outlines two large SD projects that were done at two Department of Energy National Laboratories, the Idaho National Laboratory and Sandia National Laboratories. This paper summarizes the models and then discusses some of the valuable lessons learned during these two modeling efforts.

  9. Comparing models of Red Knot population dynamics

    USGS Publications Warehouse

    McGowan, Conor

    2015-01-01

    Predictive population modeling contributes to our basic scientific understanding of population dynamics, but can also inform management decisions by evaluating alternative actions in virtual environments. Quantitative models mathematically reflect scientific hypotheses about how a system functions. In Delaware Bay, mid-Atlantic Coast, USA, to more effectively manage horseshoe crab (Limulus polyphemus) harvests and protect Red Knot (Calidris canutus rufa) populations, models are used to compare harvest actions and predict the impacts on crab and knot populations. Management has been chiefly driven by the core hypothesis that horseshoe crab egg abundance governs the survival and reproduction of migrating Red Knots that stopover in the Bay during spring migration. However, recently, hypotheses proposing that knot dynamics are governed by cyclical lemming dynamics garnered some support in data analyses. In this paper, I present alternative models of Red Knot population dynamics to reflect alternative hypotheses. Using 2 models with different lemming population cycle lengths and 2 models with different horseshoe crab effects, I project the knot population into the future under environmental stochasticity and parametric uncertainty with each model. I then compare each model's predictions to 10 yr of population monitoring from Delaware Bay. Using Bayes' theorem and model weight updating, models can accrue weight or support for one or another hypothesis of population dynamics. With 4 models of Red Knot population dynamics and only 10 yr of data, no hypothesis clearly predicted population count data better than another. The collapsed lemming cycle model performed best, accruing ~35% of the model weight, followed closely by the horseshoe crab egg abundance model, which accrued ~30% of the weight. The models that predicted no decline or stable populations (i.e. the 4-yr lemming cycle model and the weak horseshoe crab effect model) were the most weakly supported.

  10. Modeling microbial growth and dynamics.

    PubMed

    Esser, Daniel S; Leveau, Johan H J; Meyer, Katrin M

    2015-11-01

    Modeling has become an important tool for widening our understanding of microbial growth in the context of applied microbiology and related to such processes as safe food production, wastewater treatment, bioremediation, or microbe-mediated mining. Various modeling techniques, such as primary, secondary and tertiary mathematical models, phenomenological models, mechanistic or kinetic models, reactive transport models, Bayesian network models, artificial neural networks, as well as agent-, individual-, and particle-based models have been applied to model microbial growth and activity in many applied fields. In this mini-review, we summarize the basic concepts of these models using examples and applications from food safety and wastewater treatment systems. We further review recent developments in other applied fields focusing on models that explicitly include spatial relationships. Using these examples, we point out the conceptual similarities across fields of application and encourage the combined use of different modeling techniques in hybrid models as well as their cross-disciplinary exchange. For instance, pattern-oriented modeling has its origin in ecology but may be employed to parameterize microbial growth models when experimental data are scarce. Models could also be used as virtual laboratories to optimize experimental design analogous to the virtual ecologist approach. Future microbial growth models will likely become more complex to benefit from the rich toolbox that is now available to microbial growth modelers.

  11. Differential equation models for sharp threshold dynamics.

    PubMed

    Schramm, Harrison C; Dimitrov, Nedialko B

    2014-01-01

    We develop an extension to differential equation models of dynamical systems to allow us to analyze probabilistic threshold dynamics that fundamentally and globally change system behavior. We apply our novel modeling approach to two cases of interest: a model of infectious disease modified for malware where a detection event drastically changes dynamics by introducing a new class in competition with the original infection; and the Lanchester model of armed conflict, where the loss of a key capability drastically changes the effectiveness of one of the sides. We derive and demonstrate a step-by-step, repeatable method for applying our novel modeling approach to an arbitrary system, and we compare the resulting differential equations to simulations of the system's random progression. Our work leads to a simple and easily implemented method for analyzing probabilistic threshold dynamics using differential equations.

  12. Equivalent dynamic model of DEMES rotary joint

    NASA Astrophysics Data System (ADS)

    Zhao, Jianwen; Wang, Shu; Xing, Zhiguang; McCoul, David; Niu, Junyang; Huang, Bo; Liu, Liwu; Leng, Jinsong

    2016-07-01

    The dielectric elastomer minimum energy structure (DEMES) can realize large angular deformations by a small voltage-induced strain of the dielectric elastomer (DE), so it is a suitable candidate to make a rotary joint for a soft robot. Dynamic analysis is necessary for some applications, but the dynamic response of DEMESs is difficult to model because of the complicated morphology and viscoelasticity of the DE film. In this paper, a method composed of theoretical analysis and experimental measurement is presented to model the dynamic response of a DEMES rotary joint under an alternating voltage. Based on measurements of equivalent driving force and damping of the DEMES, the model can be derived. Some experiments were carried out to validate the equivalent dynamic model. The maximum angle error between model and experiment is greater than ten degrees, but it is acceptable to predict angular velocity of the DEMES, therefore, it can be applied in feedforward-feedback compound control.

  13. Dynamics Modelling of Biolistic Gene Guns

    SciTech Connect

    Zhang, M.; Tao, W.; Pianetta, P.A.

    2009-06-04

    The gene transfer process using biolistic gene guns is a highly dynamic process. To achieve good performance, the process needs to be well understood and controlled. Unfortunately, no dynamic model is available in the open literature for analysing and controlling the process. This paper proposes such a model. Relationships of the penetration depth with the helium pressure, the penetration depth with the acceleration distance, and the penetration depth with the micro-carrier radius are presented. Simulations have also been conducted. The results agree well with experimental results in the open literature. The contribution of this paper includes a dynamic model for improving and manipulating performance of the biolistic gene gun.

  14. Markov state models of biomolecular conformational dynamics

    PubMed Central

    Chodera, John D.; Noé, Frank

    2014-01-01

    It has recently become practical to construct Markov state models (MSMs) that reproduce the long-time statistical conformational dynamics of biomolecules using data from molecular dynamics simulations. MSMs can predict both stationary and kinetic quantities on long timescales (e.g. milliseconds) using a set of atomistic molecular dynamics simulations that are individually much shorter, thus addressing the well-known sampling problem in molecular dynamics simulation. In addition to providing predictive quantitative models, MSMs greatly facilitate both the extraction of insight into biomolecular mechanism (such as folding and functional dynamics) and quantitative comparison with single-molecule and ensemble kinetics experiments. A variety of methodological advances and software packages now bring the construction of these models closer to routine practice. Here, we review recent progress in this field, considering theoretical and methodological advances, new software tools, and recent applications of these approaches in several domains of biochemistry and biophysics, commenting on remaining challenges. PMID:24836551

  15. Dynamic coupling of three hydrodynamic models

    NASA Astrophysics Data System (ADS)

    Hartnack, J. N.; Philip, G. T.; Rungoe, M.; Smith, G.; Johann, G.; Larsen, O.; Gregersen, J.; Butts, M. B.

    2008-12-01

    The need for integrated modelling is evidently present within the field of flood management and flood forecasting. Engineers, modellers and managers are faced with flood problems which transcend the classical hydrodynamic fields of urban, river and coastal flooding. Historically the modeller has been faced with having to select one hydrodynamic model to cover all the aspects of the potentially complex dynamics occurring in a flooding situation. Such a single hydrodynamic model does not cover all dynamics of flood modelling equally well. Thus the ideal choice may in fact be a combination of models. Models combining two numerical/hydrodynamic models are becoming more standard, typically these models combine a 1D river model with a 2D overland flow model or alternatively a 1D sewer/collection system model with a 2D overland solver. In complex coastal/urban areas the flood dynamics may include rivers/streams, collection/storm water systems along with the overland flow. The dynamics within all three areas is of the same time scale and there is feedback in the system across the couplings. These two aspects dictate a fully dynamic three way coupling as opposed to running the models sequentially. It will be shown that the main challenges of the three way coupling are time step issues related to the difference in numerical schemes used in the three model components and numerical instabilities caused by the linking of the model components. MIKE FLOOD combines the models MIKE 11, MIKE 21 and MOUSE into one modelling framework which makes it possible to couple any combination of river, urban and overland flow fully dynamically. The MIKE FLOOD framework will be presented with an overview of the coupling possibilities. The flood modelling concept will be illustrated through real life cases in Australia and in Germany. The real life cases reflect dynamics and interactions across all three model components which are not possible to reproduce using a two-way coupling alone. The

  16. Dynamic Modeling, Chaos, and Cognitive Development.

    ERIC Educational Resources Information Center

    Howe, Mark L.; Rabinowitz, F. Michael

    1994-01-01

    Introduces the essential constructs involved in dynamic modeling, in relation to issues in psychological development. Presents several instances of how the principles of dynamic systems can be translated into mathematical formalism. Concludes that transition is a key invariance in development and that single subject, longitudinal designs are…

  17. Two-Stage Reduction Of Dynamical Models

    NASA Technical Reports Server (NTRS)

    Lee, Allan Y.; Tsuha, Walter S.

    1993-01-01

    No longer necessary to solve eigenvalue problems of high order. Component-mode projection-and-assembly model-reduction (COMPARE) method provides approximation of dynamics of vibrations of complicated, multiple flexible bodies by use of mathematical models of reduced order. Incorporates component-mode synthesis (CMS) method and enhanced projection-and-assembly (EP&A) method, described in "Enhanced Method of Reduction of Dynamical Models" (NPO-18402), providing for somewhat simplified two-stage process in which order of applicable mathematical models reduced. Reduced-order models used to design algorithms of control systems to suppress vibrations or otherwise control structure.

  18. Model Verification of Mixed Dynamic Systems

    NASA Technical Reports Server (NTRS)

    Evensen, D. A.; Chrostowski, J. D.; Hasselman, T. K.

    1982-01-01

    MOVER uses experimental data to verify mathematical models of "mixed" dynamic systems. The term "mixed" refers to interactive mechanical, hydraulic, electrical, and other components. Program compares analytical transfer functions with experiment.

  19. Automated adaptive inference of phenomenological dynamical models

    NASA Astrophysics Data System (ADS)

    Daniels, Bryan C.; Nemenman, Ilya

    2015-08-01

    Dynamics of complex systems is often driven by large and intricate networks of microscopic interactions, whose sheer size obfuscates understanding. With limited experimental data, many parameters of such dynamics are unknown, and thus detailed, mechanistic models risk overfitting and making faulty predictions. At the other extreme, simple ad hoc models often miss defining features of the underlying systems. Here we develop an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the available data. Such adaptive models produce accurate predictions even when microscopic details are unknown. The approach is computationally tractable, even for a relatively large number of dynamical variables. Using simulated data, it correctly infers the phase space structure for planetary motion, avoids overfitting in a biological signalling system and produces accurate predictions for yeast glycolysis with tens of data points and over half of the interacting species unobserved.

  20. Automated adaptive inference of phenomenological dynamical models

    PubMed Central

    Daniels, Bryan C.; Nemenman, Ilya

    2015-01-01

    Dynamics of complex systems is often driven by large and intricate networks of microscopic interactions, whose sheer size obfuscates understanding. With limited experimental data, many parameters of such dynamics are unknown, and thus detailed, mechanistic models risk overfitting and making faulty predictions. At the other extreme, simple ad hoc models often miss defining features of the underlying systems. Here we develop an approach that instead constructs phenomenological, coarse-grained models of network dynamics that automatically adapt their complexity to the available data. Such adaptive models produce accurate predictions even when microscopic details are unknown. The approach is computationally tractable, even for a relatively large number of dynamical variables. Using simulated data, it correctly infers the phase space structure for planetary motion, avoids overfitting in a biological signalling system and produces accurate predictions for yeast glycolysis with tens of data points and over half of the interacting species unobserved. PMID:26293508

  1. MODELING MICROBUBBLE DYNAMICS IN BIOMEDICAL APPLICATIONS*

    PubMed Central

    CHAHINE, Georges L.; HSIAO, Chao-Tsung

    2012-01-01

    Controlling microbubble dynamics to produce desirable biomedical outcomes when and where necessary and avoid deleterious effects requires advanced knowledge, which can be achieved only through a combination of experimental and numerical/analytical techniques. The present communication presents a multi-physics approach to study the dynamics combining viscous- in-viscid effects, liquid and structure dynamics, and multi bubble interaction. While complex numerical tools are developed and used, the study aims at identifying the key parameters influencing the dynamics, which need to be included in simpler models. PMID:22833696

  2. Approximate dynamic model of a turbojet engine

    NASA Technical Reports Server (NTRS)

    Artemov, O. A.

    1978-01-01

    An approximate dynamic nonlinear model of a turbojet engine is elaborated on as a tool in studying the aircraft control loop, with the turbojet engine treated as an actuating component. Approximate relationships linking the basic engine parameters and shaft speed are derived to simplify the problem, and to aid in constructing an approximate nonlinear dynamic model of turbojet engine performance useful for predicting aircraft motion.

  3. A dynamical model of color confinement

    NASA Astrophysics Data System (ADS)

    Loh, S.; Biró, T. S.; Mosel, U.; Thoma, M. H.

    1996-02-01

    A dynamical model of confinement based on a transport theoretical description of the Friedberg-Lee model is extended to explicit color degrees of freedom. The string tension is reproduced by an adiabatic string formation from the nucleon ground state. Color isovector oscillation modes of a qq¯-system are investigated for a wide range of relative qq¯-momenta and the dynamical impact of color confinement on the quark motion is shown.

  4. Single timepoint models of dynamic systems

    PubMed Central

    Sachs, K.; Itani, S.; Fitzgerald, J.; Schoeberl, B.; Nolan, G. P.; Tomlin, C. J.

    2013-01-01

    Many interesting studies aimed at elucidating the connectivity structure of biomolecular pathways make use of abundance measurements, and employ statistical and information theoretic approaches to assess connectivities. These studies often do not address the effects of the dynamics of the underlying biological system, yet dynamics give rise to impactful issues such as timepoint selection and its effect on structure recovery. In this work, we study conditions for reliable retrieval of the connectivity structure of a dynamic system, and the impact of dynamics on structure-learning efforts. We encounter an unexpected problem not previously described in elucidating connectivity structure from dynamic systems, show how this confounds structure learning of the system and discuss possible approaches to overcome the confounding effect. Finally, we test our hypotheses on an accurate dynamic model of the IGF signalling pathway. We use two structure-learning methods at four time points to contrast the performance and robustness of those methods in terms of recovering correct connectivity. PMID:24511382

  5. Swarm Intelligence for Urban Dynamics Modelling

    NASA Astrophysics Data System (ADS)

    Ghnemat, Rawan; Bertelle, Cyrille; Duchamp, Gérard H. E.

    2009-04-01

    In this paper, we propose swarm intelligence algorithms to deal with dynamical and spatial organization emergence. The goal is to model and simulate the developement of spatial centers using multi-criteria. We combine a decentralized approach based on emergent clustering mixed with spatial constraints or attractions. We propose an extension of the ant nest building algorithm with multi-center and adaptive process. Typically, this model is suitable to analyse and simulate urban dynamics like gentrification or the dynamics of the cultural equipment in urban area.

  6. Swarm Intelligence for Urban Dynamics Modelling

    SciTech Connect

    Ghnemat, Rawan; Bertelle, Cyrille; Duchamp, Gerard H. E.

    2009-04-16

    In this paper, we propose swarm intelligence algorithms to deal with dynamical and spatial organization emergence. The goal is to model and simulate the developement of spatial centers using multi-criteria. We combine a decentralized approach based on emergent clustering mixed with spatial constraints or attractions. We propose an extension of the ant nest building algorithm with multi-center and adaptive process. Typically, this model is suitable to analyse and simulate urban dynamics like gentrification or the dynamics of the cultural equipment in urban area.

  7. Discrete model for DNA-promoter dynamics

    NASA Astrophysics Data System (ADS)

    Salerno, Mario

    1991-10-01

    We introduce a discrete model for DNA that takes into account the information about specific base sequences along the double helix. We use this model to study nonlinear wave dynamics of the T7A1 DNA promoter. As results we show the existence in the promoter of a dynamically active region in which static solitons acquire finite velocities, which contrasts with regions where solitons simply remain static. Furthermore, when they pass through this region moving solitons are accelerated, decelerated, or reflected, depending on their initial velocities. The possibility that these dynamical effects play a role in the mechanism of genetic activation is suggested.

  8. Battery electrochemical nonlinear/dynamic SPICE model

    SciTech Connect

    Glass, M.C.

    1996-12-31

    An Integrated Battery Model has been produced which accurately represents DC nonlinear battery behavior together with transient dynamics. The NiH{sub 2} battery model begins with a given continuous-function electrochemical math model. The math model for the battery consists of the sum of two electrochemical process DC currents, which are a function of the battery terminal voltage. This paper describes procedures for realizing a voltage-source SPICE model which implements the electrochemical equations using behavioral sources. The model merges the essentially DC non-linear behavior of the electrochemical model, together with the empirical AC dynamic terminal impedance from measured data. Thus the model integrates the short-term linear impedance behavior, with the long-term nonlinear DC resistance behavior. The long-duration non-Faradaic capacitive behavior of the battery is represented by a time constant. Outputs of the model include battery voltage/current, state-of-charge, and charge-current efficiency.

  9. Model systems for single molecule polymer dynamics.

    PubMed

    Latinwo, Folarin; Schroeder, Charles M

    2011-01-01

    Double stranded DNA (dsDNA) has long served as a model system for single molecule polymer dynamics. However, dsDNA is a semiflexible polymer, and the structural rigidity of the DNA double helix gives rise to local molecular properties and chain dynamics that differ from flexible chains, including synthetic organic polymers. Recently, we developed single stranded DNA (ssDNA) as a new model system for single molecule studies of flexible polymer chains. In this work, we discuss model polymer systems in the context of "ideal" and "real" chain behavior considering thermal blobs, tension blobs, hydrodynamic drag and force-extension relations. In addition, we present monomer aspect ratio as a key parameter describing chain conformation and dynamics, and we derive dynamical scaling relations in terms of this molecular-level parameter. We show that asymmetric Kuhn segments can suppress monomer-monomer interactions, thereby altering global chain dynamics. Finally, we discuss ssDNA in the context of a new model system for single molecule polymer dynamics. Overall, we anticipate that future single polymer studies of flexible chains will reveal new insight into the dynamic behavior of "real" polymers, which will highlight the importance of molecular individualism and the prevalence of non-linear phenomena.

  10. Model systems for single molecule polymer dynamics

    PubMed Central

    Latinwo, Folarin

    2012-01-01

    Double stranded DNA (dsDNA) has long served as a model system for single molecule polymer dynamics. However, dsDNA is a semiflexible polymer, and the structural rigidity of the DNA double helix gives rise to local molecular properties and chain dynamics that differ from flexible chains, including synthetic organic polymers. Recently, we developed single stranded DNA (ssDNA) as a new model system for single molecule studies of flexible polymer chains. In this work, we discuss model polymer systems in the context of “ideal” and “real” chain behavior considering thermal blobs, tension blobs, hydrodynamic drag and force–extension relations. In addition, we present monomer aspect ratio as a key parameter describing chain conformation and dynamics, and we derive dynamical scaling relations in terms of this molecular-level parameter. We show that asymmetric Kuhn segments can suppress monomer–monomer interactions, thereby altering global chain dynamics. Finally, we discuss ssDNA in the context of a new model system for single molecule polymer dynamics. Overall, we anticipate that future single polymer studies of flexible chains will reveal new insight into the dynamic behavior of “real” polymers, which will highlight the importance of molecular individualism and the prevalence of non-linear phenomena. PMID:22956980

  11. A stochastic model of human gait dynamics

    NASA Astrophysics Data System (ADS)

    Ashkenazy, Yosef; M. Hausdorff, Jeffrey; Ch. Ivanov, Plamen; Eugene Stanley, H.

    2002-12-01

    We present a stochastic model of gait rhythm dynamics, based on transitions between different “neural centers”, that reproduces distinctive statistical properties of normal human walking. By tuning one model parameter, the transition (hopping) range, the model can describe alterations in gait dynamics from childhood to adulthood-including a decrease in the correlation and volatility exponents with maturation. The model also generates time series with multifractal spectra whose broadness depends only on this parameter. Moreover, we find that the volatility exponent increases monotonically as a function of the width of the multifractal spectrum, suggesting the possibility of a change in multifractality with maturation.

  12. Integration of Dynamic Models in Range Operations

    NASA Technical Reports Server (NTRS)

    Bardina, Jorge; Thirumalainambi, Rajkumar

    2004-01-01

    This work addresses the various model interactions in real-time to make an efficient internet based decision making tool for Shuttle launch. The decision making tool depends on the launch commit criteria coupled with physical models. Dynamic interaction between a wide variety of simulation applications and techniques, embedded algorithms, and data visualizations are needed to exploit the full potential of modeling and simulation. This paper also discusses in depth details of web based 3-D graphics and applications to range safety. The advantages of this dynamic model integration are secure accessibility and distribution of real time information to other NASA centers.

  13. Multi-scale modelling and dynamics

    NASA Astrophysics Data System (ADS)

    Müller-Plathe, Florian

    Moving from a fine-grained particle model to one of lower resolution leads, with few exceptions, to an acceleration of molecular mobility, higher diffusion coefficient, lower viscosities and more. On top of that, the level of acceleration is often different for different dynamical processes as well as for different state points. While the reasons are often understood, the fact that coarse-graining almost necessarily introduces unpredictable acceleration of the molecular dynamics severely limits its usefulness as a predictive tool. There are several attempts under way to remedy these shortcoming of coarse-grained models. On the one hand, we follow bottom-up approaches. They attempt already when the coarse-graining scheme is conceived to estimate their impact on the dynamics. This is done by excess-entropy scaling. On the other hand, we also pursue a top-down development. Here we start with a very coarse-grained model (dissipative particle dynamics) which in its native form produces qualitatively wrong polymer dynamics, as its molecules cannot entangle. This model is modified by additional temporary bonds, so-called slip springs, to repair this defect. As a result, polymer melts and solutions described by the slip-spring DPD model show correct dynamical behaviour. Read more: ``Excess entropy scaling for the segmental and global dynamics of polyethylene melts'', E. Voyiatzis, F. Müller-Plathe, and M.C. Böhm, Phys. Chem. Chem. Phys. 16, 24301-24311 (2014). [DOI: 10.1039/C4CP03559C] ``Recovering the Reptation Dynamics of Polymer Melts in Dissipative Particle Dynamics Simulations via Slip-Springs'', M. Langeloth, Y. Masubuchi, M. C. Böhm, and F. Müller-Plathe, J. Chem. Phys. 138, 104907 (2013). [DOI: 10.1063/1.4794156].

  14. Uncertainty and Sensitivity in Surface Dynamics Modeling

    NASA Astrophysics Data System (ADS)

    Kettner, Albert J.; Syvitski, James P. M.

    2016-05-01

    Papers for this special issue on 'Uncertainty and Sensitivity in Surface Dynamics Modeling' heralds from papers submitted after the 2014 annual meeting of the Community Surface Dynamics Modeling System or CSDMS. CSDMS facilitates a diverse community of experts (now in 68 countries) that collectively investigate the Earth's surface-the dynamic interface between lithosphere, hydrosphere, cryosphere, and atmosphere, by promoting, developing, supporting and disseminating integrated open source software modules. By organizing more than 1500 researchers, CSDMS has the privilege of identifying community strengths and weaknesses in the practice of software development. We recognize, for example, that progress has been slow on identifying and quantifying uncertainty and sensitivity in numerical modeling of earth's surface dynamics. This special issue is meant to raise awareness for these important subjects and highlight state-of-the-art progress.

  15. Energy Balance Models and Planetary Dynamics

    NASA Technical Reports Server (NTRS)

    Domagal-Goldman, Shawn

    2012-01-01

    We know that planetary dynamics can have a significant affect on the climate of planets. Planetary dynamics dominate the glacial-interglacial periods on Earth, leaving a significant imprint on the geological record. They have also been demonstrated to have a driving influence on the climates of other planets in our solar system. We should therefore expect th.ere to be similar relationships on extrasolar planets. Here we describe a simple energy balance model that can predict the growth and thickness of glaciers, and their feedbacks on climate. We will also describe model changes that we have made to include planetary dynamics effects. This is the model we will use at the start of our collaboration to handle the influence of dynamics on climate.

  16. Dynamic landscape models of coevolutionary games.

    PubMed

    Richter, Hendrik

    2017-02-24

    Players of coevolutionary games may update not only their strategies but also their networks of interaction. Based on interpreting the payoff of players as fitness, dynamic landscape models are proposed. The modeling procedure is carried out for Prisoner's Dilemma (PD) and Snowdrift (SD) games that both use either birth-death (BD) or death-birth (DB) strategy updating. The main focus is on using dynamic fitness landscapes as a mathematical model of coevolutionary game dynamics. Hence, an alternative tool for analyzing coevolutionary games becomes available, and landscape measures such as modality, ruggedness and information content can be computed and analyzed. In addition, fixation properties of the games and quantifiers characterizing the interaction networks are calculated numerically. Relations are established between landscape properties expressed by landscape measures and quantifiers of coevolutionary game dynamics such as fixation probabilities, fixation times and network properties.

  17. Stirling Engine Dynamic System Modeling

    NASA Technical Reports Server (NTRS)

    Nakis, Christopher G.

    2004-01-01

    The Thermo-Mechanical systems branch at the Glenn Research Center focuses a large amount time on Stirling engines. These engines will be used on missions where solar power is inefficient, especially in deep space. I work with Tim Regan and Ed Lewandowski who are currently developing and validating a mathematical model for the Stirling engines. This model incorporates all aspects of the system including, mechanical, electrical and thermodynamic components. Modeling is done through Simplorer, a program capable of running simulations of the model. Once created and then proven to be accurate, a model is used for developing new ideas for engine design. My largest specific project involves varying key parameters in the model and quantifying the results. This can all be done relatively trouble-free with the help of Simplorer. Once the model is complete, Simplorer will do all the necessary calculations. The more complicated part of this project is determining which parameters to vary. Finding key parameters depends on the potential for a value to be independently altered in the design. For example, a change in one dimension may lead to a proportional change to the rest of the model, and no real progress is made. Also, the ability for a changed value to have a substantial impact on the outputs of the system is important. Results will be condensed into graphs and tables with the purpose of better communication and understanding of the data. With the changing of these parameters, a more optimal design can be created without having to purchase or build any models. Also, hours and hours of results can be simulated in minutes. In the long run, using mathematical models can save time and money. Along with this project, I have many other smaller assignments throughout the summer. My main goal is to assist in the processes of model development, validation and testing.

  18. Integrated dynamics modeling for supercavitating vehicle systems

    NASA Astrophysics Data System (ADS)

    Kim, Seonhong; Kim, Nakwan

    2015-06-01

    We have performed integrated dynamics modeling for a supercavitating vehicle. A 6-DOF equation of motion was constructed by defining the forces and moments acting on the supercavitating body surface that contacted water. The wetted area was obtained by calculating the cavity size and axis. Cavity dynamics were determined to obtain the cavity profile for calculating the wetted area. Subsequently, the forces and moments acting on each wetted part-the cavitator, fins, and vehicle body-were obtained by physical modeling. The planing force-the interaction force between the vehicle transom and cavity wall-was calculated using the apparent mass of the immersed vehicle transom. We integrated each model and constructed an equation of motion for the supercavitating system. We performed numerical simulations using the integrated dynamics model to analyze the characteristics of the supercavitating system and validate the modeling completeness. Our research enables the design of high-quality controllers and optimal supercavitating systems.

  19. Modeling cell shape and dynamics on micropatterns

    PubMed Central

    Albert, Philipp J.; Schwarz, Ulrich S.

    2016-01-01

    ABSTRACT Adhesive micropatterns have become a standard tool to study cells under defined conditions. Applications range from controlling the differentiation and fate of single cells to guiding the collective migration of cell sheets. In long-term experiments, single cell normalization is challenged by cell division. For all of these setups, mathematical models predicting cell shape and dynamics can guide pattern design. Here we review recent advances in predicting and explaining cell shape, traction forces and dynamics on micropatterns. Starting with contour models as the simplest approach to explain concave cell shapes, we move on to network and continuum descriptions as examples for static models. To describe dynamic processes, cellular Potts, vertex and phase field models can be used. Different types of model are appropriate to address different biological questions and together, they provide a versatile tool box to predict cell behavior on micropatterns. PMID:26838278

  20. Dynamic stiffness model of spherical parallel robots

    NASA Astrophysics Data System (ADS)

    Cammarata, Alessandro; Caliò, Ivo; D`Urso, Domenico; Greco, Annalisa; Lacagnina, Michele; Fichera, Gabriele

    2016-12-01

    A novel approach to study the elastodynamics of Spherical Parallel Robots is described through an exact dynamic model. Timoshenko arches are used to simulate flexible curved links while the base and mobile platforms are modelled as rigid bodies. Spatial joints are inherently included into the model without Lagrangian multipliers. At first, the equivalent dynamic stiffness matrix of each leg, made up of curved links joined by spatial joints, is derived; then these matrices are assembled to obtain the Global Dynamic Stiffness Matrix of the robot at a given pose. Actuator stiffness is also included into the model to verify its influence on vibrations and modes. The latter are found by applying the Wittrick-Williams algorithm. Finally, numerical simulations and direct comparison to commercial FE results are used to validate the proposed model.

  1. Modeling Dynamic Regulatory Processes in Stroke.

    SciTech Connect

    McDermott, Jason E.; Jarman, Kenneth D.; Taylor, Ronald C.; Lancaster, Mary J.; Shankaran, Harish; Vartanian, Keri B.; Stevens, S.L.; Stenzel-Poore, Mary; Sanfilippo, Antonio P.

    2012-10-11

    The ability to examine in silico the behavior of biological systems can greatly accelerate the pace of discovery in disease pathologies, such as stroke, where in vivo experimentation is lengthy and costly. In this paper we describe an approach to in silico examination of blood genomic responses to neuroprotective agents and subsequent stroke through the development of dynamic models of the regulatory processes observed in the experimental gene expression data. First, we identified functional gene clusters from these data. Next, we derived ordinary differential equations (ODEs) relating regulators and functional clusters from the data. These ODEs were used to develop dynamic models that simulate the expression of regulated functional clusters using system dynamics as the modeling paradigm. The dynamic model has the considerable advantage of only requiring an initial starting state, and does not require measurement of regulatory influences at each time point in order to make accurate predictions. The manipulation of input model parameters, such as changing the magnitude of gene expression, made it possible to assess the behavior of the networks through time under varying conditions. We report that an optimized dynamic model can provide accurate predictions of overall system behavior under several different preconditioning paradigms.

  2. Component testing for dynamic model verification

    NASA Technical Reports Server (NTRS)

    Hasselman, T. K.; Chrostowski, J. D.

    1984-01-01

    Dynamic model verification is the process whereby an analytical model of a dynamic system is compared with experimental data, adjusted if necessary to bring it into agreement with the data, and then qualified for future use in predicting system response in a different dynamic environment. These are various ways to conduct model verification. The approach taken here employs Bayesian statistical parameter estimation. Unlike curve fitting, whose objective is to minimize the difference between some analytical function and a given quantity of test data (or curve), Bayesian estimation attempts also to minimize the difference between the parameter values of that funciton (the model) and their initial estimates, in a least squares sense. The objectives of dynamic model verification, therefore, are to produce a model which: (1) is in agreement with test data; (2) will assist in the interpretation of test data; (3) can be used to help verify a design; (4) will reliably predict performance; and (5) in the case of space structures, will facilitate dynamic control.

  3. Dynamics Simulation Model for Space Tethers

    NASA Technical Reports Server (NTRS)

    Levin, E. M.; Pearson, J.; Oldson, J. C.

    2006-01-01

    This document describes the development of an accurate model for the dynamics of the Momentum Exchange Electrodynamic Reboost (MXER) system. The MXER is a rotating tether about 100-km long in elliptical Earth orbit designed to catch payloads in low Earth orbit and throw them to geosynchronous orbit or to Earth escape. To ensure successful rendezvous between the MXER tip catcher and a payload, a high-fidelity model of the system dynamics is required. The model developed here quantifies the major environmental perturbations, and can predict the MXER tip position to within meters over one orbit.

  4. Dynamical modeling of laser ablation processes

    SciTech Connect

    Leboeuf, J.N.; Chen, K.R.; Donato, J.M.; Geohegan, D.B.; Liu, C.L.; Puretzky, A.A.; Wood, R.F.

    1995-09-01

    Several physics and computational approaches have been developed to globally characterize phenomena important for film growth by pulsed laser deposition of materials. These include thermal models of laser-solid target interactions that initiate the vapor plume; plume ionization and heating through laser absorption beyond local thermodynamic equilibrium mechanisms; gas dynamic, hydrodynamic, and collisional descriptions of plume transport; and molecular dynamics models of the interaction of plume particles with the deposition substrate. The complexity of the phenomena involved in the laser ablation process is matched by the diversity of the modeling task, which combines materials science, atomic physics, and plasma physics.

  5. Dynamical modelling of coordinated multiple robot systems

    NASA Technical Reports Server (NTRS)

    Hayati, Samad

    1987-01-01

    The state of the art in the modeling of the dynamics of coordinated multiple robot manipulators is summarized and various problems related to this subject are discussed. It is recognized that dynamics modeling is a component used in the design of controllers for multiple cooperating robots. As such, the discussion addresses some problems related to the control of multiple robots. The techniques used to date in the modeling of closed kinematic chains are summarized. Various efforts made to date for the control of coordinated multiple manipulators is summarized.

  6. A stochastic evolutionary model for survival dynamics

    NASA Astrophysics Data System (ADS)

    Fenner, Trevor; Levene, Mark; Loizou, George

    2014-09-01

    The recent interest in human dynamics has led researchers to investigate the stochastic processes that explain human behaviour in different contexts. Here we propose a generative model to capture the essential dynamics of survival analysis, traditionally employed in clinical trials and reliability analysis in engineering. In our model, the only implicit assumption made is that the longer an actor has been in the system, the more likely it is to have failed. We derive a power-law distribution for the process and provide preliminary empirical evidence for the validity of the model from two well-known survival analysis data sets.

  7. A system dynamics model for communications networks

    NASA Astrophysics Data System (ADS)

    Awcock, A. J.; King, T. E. G.

    1985-09-01

    An abstract model of a communications network in system dynamics terminology is developed as implementation of this model by a FORTRAN program package developed at RSRE is discussed. The result of this work is a high-level simulation package in which the performance of adaptive routing algorithms and other network controls may be assessed for a network of arbitrary topology.

  8. Dynamical effects of overparametrization in nonlinear models

    NASA Astrophysics Data System (ADS)

    Aguirre, Luis Antonio; Billings, S. A.

    1995-01-01

    This paper is concemed with dynamical reconstruction for nonlinear systems. The effects of the driving function and of the complexity of a given representation on the bifurcation patter are investigated. It is shown that the use of different driving functions to excite the system may yield models with different bifurcation patterns. The complexity of the reconstructions considered is quantified by the embedding dimension and the number of estimated parameters. In this respect it appears that models which reproduce the original bifurcation behaviour are of limited complexity and that excessively complex models tend to induce ghost bifurcations and spurious dynamical regimes. Moreover, some results suggest that the effects of overparametrization on the global dynamical behaviour of a nonlinear model may be more deleterious than the presence of moderate noise levels. In order to precisely quantify the complexity of the reconstructions, global polynomials are used although the results are believed to apply to a much wider class of representations including neural networks.

  9. Magnetospheric dynamics from a low-dimensional nonlinear dynamics model

    NASA Astrophysics Data System (ADS)

    Doxas, I.; Horton, W.

    1999-05-01

    A physics based model for the coupled solar WIND-Magnetosphere-Ionosphere system (WINDMI) is described. The model is based on truncated descriptions of the collisionless microscopic energy transfer processes occurring in the quasineutral layer, and includes a thermal flux limit neglected in the Magnetohydrodynamic (MHD) closure of the moment equations. All dynamically relevant parameters of the model can be computed analytically. The system is both Kirchhoffian and Hamiltonian, ensuring that the power input from the solar wind is divided into physically realizable energy sub-components, a property not shared by data-based filters. The model provides a consistent mathematical formalism in which different models of the solar wind driver, ionospheric dissipation, global field configuration, and substorm trigger mechanism can be inserted, and the coupling between the different parts of the system investigated.

  10. A dynamical model for the Utricularia trap

    PubMed Central

    Llorens, Coraline; Argentina, Médéric; Bouret, Yann; Marmottant, Philippe; Vincent, Olivier

    2012-01-01

    We propose a model that captures the dynamics of a carnivorous plant, Utricularia inflata. This plant possesses tiny traps for capturing small aquatic animals. Glands pump water out of the trap, yielding a negative pressure difference between the plant and its surroundings. The trap door is set into a meta-stable state and opens quickly as an extra pressure is generated by the displacement of a potential prey. As the door opens, the pressure difference sucks the animal into the trap. We write an ODE model that captures all the physics at play. We show that the dynamics of the plant is quite similar to neuronal dynamics and we analyse the effect of a white noise on the dynamics of the trap. PMID:22859569

  11. Adaptation dynamics of the quasispecies model

    NASA Astrophysics Data System (ADS)

    Jain, Kavita

    2009-02-01

    We study the adaptation dynamics of an initially maladapted population evolving via the elementary processes of mutation and selection. The evolution occurs on rugged fitness landscapes which are defined on the multi-dimensional genotypic space and have many local peaks separated by low fitness valleys. We mainly focus on the Eigen's model that describes the deterministic dynamics of an infinite number of self-replicating molecules. In the stationary state, for small mutation rates such a population forms a {\\it quasispecies} which consists of the fittest genotype and its closely related mutants. The quasispecies dynamics on rugged fitness landscape follow a punctuated (or step-like) pattern in which a population jumps from a low fitness peak to a higher one, stays there for a considerable time before shifting the peak again and eventually reaches the global maximum of the fitness landscape. We calculate exactly several properties of this dynamical process within a simplified version of the quasispecies model.

  12. Modeling hybrid perovskites by molecular dynamics

    NASA Astrophysics Data System (ADS)

    Mattoni, Alessandro; Filippetti, Alessio; Caddeo, Claudia

    2017-02-01

    The topical review describes the recent progress in the modeling of hybrid perovskites by molecular dynamics simulations. Hybrid perovskites and in particular methylammonium lead halide (MAPI) have a tremendous technological relevance representing the fastest-advancing solar material to date. They also represent the paradigm of an organic-inorganic crystalline material with some conceptual peculiarities: an inorganic semiconductor for what concerns the electronic and absorption properties with a hybrid and solution processable organic-inorganic body. After briefly explaining the basic concepts of ab initio and classical molecular dynamics, the model potential recently developed for hybrid perovskites is described together with its physical motivation as a simple ionic model able to reproduce the main dynamical properties of the material. Advantages and limits of the two strategies (either ab initio or classical) are discussed in comparison with the time and length scales (from pico to microsecond scale) necessary to comprehensively study the relevant properties of hybrid perovskites from molecular reorientations to electrocaloric effects. The state-of-the-art of the molecular dynamics modeling of hybrid perovskites is reviewed by focusing on a selection of showcase applications of methylammonium lead halide: molecular cations disorder; temperature evolution of vibrations; thermally activated defects diffusion; thermal transport. We finally discuss the perspectives in the modeling of hybrid perovskites by molecular dynamics.

  13. Modeling hybrid perovskites by molecular dynamics.

    PubMed

    Mattoni, Alessandro; Filippetti, Alessio; Caddeo, Claudia

    2017-02-01

    The topical review describes the recent progress in the modeling of hybrid perovskites by molecular dynamics simulations. Hybrid perovskites and in particular methylammonium lead halide (MAPI) have a tremendous technological relevance representing the fastest-advancing solar material to date. They also represent the paradigm of an organic-inorganic crystalline material with some conceptual peculiarities: an inorganic semiconductor for what concerns the electronic and absorption properties with a hybrid and solution processable organic-inorganic body. After briefly explaining the basic concepts of ab initio and classical molecular dynamics, the model potential recently developed for hybrid perovskites is described together with its physical motivation as a simple ionic model able to reproduce the main dynamical properties of the material. Advantages and limits of the two strategies (either ab initio or classical) are discussed in comparison with the time and length scales (from pico to microsecond scale) necessary to comprehensively study the relevant properties of hybrid perovskites from molecular reorientations to electrocaloric effects. The state-of-the-art of the molecular dynamics modeling of hybrid perovskites is reviewed by focusing on a selection of showcase applications of methylammonium lead halide: molecular cations disorder; temperature evolution of vibrations; thermally activated defects diffusion; thermal transport. We finally discuss the perspectives in the modeling of hybrid perovskites by molecular dynamics.

  14. Session 6: Dynamic Modeling and Systems Analysis

    NASA Technical Reports Server (NTRS)

    Csank, Jeffrey; Chapman, Jeffryes; May, Ryan

    2013-01-01

    These presentations cover some of the ongoing work in dynamic modeling and dynamic systems analysis. The first presentation discusses dynamic systems analysis and how to integrate dynamic performance information into the systems analysis. The ability to evaluate the dynamic performance of an engine design may allow tradeoffs between the dynamic performance and operability of a design resulting in a more efficient engine design. The second presentation discusses the Toolbox for Modeling and Analysis of Thermodynamic Systems (T-MATS). T-MATS is a Simulation system with a library containing the basic building blocks that can be used to create dynamic Thermodynamic Systems. Some of the key features include Turbo machinery components, such as turbines, compressors, etc., and basic control system blocks. T-MAT is written in the Matlab-Simulink environment and is open source software. The third presentation focuses on getting additional performance from the engine by allowing the limit regulators only to be active when a limit is danger of being violated. Typical aircraft engine control architecture is based on MINMAX scheme, which is designed to keep engine operating within prescribed mechanical/operational safety limits. Using a conditionally active min-max limit regulator scheme, additional performance can be gained by disabling non-relevant limit regulators

  15. Dispersive models describing mosquitoes’ population dynamics

    NASA Astrophysics Data System (ADS)

    Yamashita, W. M. S.; Takahashi, L. T.; Chapiro, G.

    2016-08-01

    The global incidences of dengue and, more recently, zica virus have increased the interest in studying and understanding the mosquito population dynamics. Understanding this dynamics is important for public health in countries where climatic and environmental conditions are favorable for the propagation of these diseases. This work is based on the study of nonlinear mathematical models dealing with the life cycle of the dengue mosquito using partial differential equations. We investigate the existence of traveling wave solutions using semi-analytical method combining dynamical systems techniques and numerical integration. Obtained solutions are validated through numerical simulations using finite difference schemes.

  16. Modeling the Dynamics of Compromised Networks

    SciTech Connect

    Soper, B; Merl, D M

    2011-09-12

    Accurate predictive models of compromised networks would contribute greatly to improving the effectiveness and efficiency of the detection and control of network attacks. Compartmental epidemiological models have been applied to modeling attack vectors such as viruses and worms. We extend the application of these models to capture a wider class of dynamics applicable to cyber security. By making basic assumptions regarding network topology we use multi-group epidemiological models and reaction rate kinetics to model the stochastic evolution of a compromised network. The Gillespie Algorithm is used to run simulations under a worst case scenario in which the intruder follows the basic connection rates of network traffic as a method of obfuscation.

  17. Modelling Martian surface channel dynamics

    NASA Astrophysics Data System (ADS)

    Coulthard, T. J.; Skinner, C.; Kim, J.; Schumann, G.; Neal, J. C.; Bates, P. D.

    2014-12-01

    Extensive and large surface channel features found at Athabasca and Kasei have previously been attributed to the erosional power of flowing water with palaeoflood discharges being estimated from the surface channel dimensions. However, in order for these channels to be alluvial there are several basic questions to be answered. Are water flows under Martian conditions capable of eroding the amounts of sediment required to leave these channels? Are our present estimates of palaeoflood discharge of correct magnitude to carry out this erosion? And are the channels a product of one or many flood events? Here, we use a numerical model (CAESAR-Lisflood) that links a two-dimensional hydrodynamic flow scheme to a sediment transport model to simulate fluvial morphodynamics in the Athabasca and Kasei regions. CAESAR-Lisflood has been successfully applied to simulating flooding, erosion and deposition on Earth in a number of locations, and allows the development of channels, bars, braids and other fluvial features to be modelled. The numerical scheme of the model was adapted to Martian conditions by adjusting gravity, drag co-efficient, roughness and grainsize terms. Preliminary findings indicate that fluvial erosion and deposition is capable of creating mega channel features found at these sites and that existing palaeflood estimates are commensurate with channel forming discharges for these features.

  18. Dynamical Modeling of Surface Tension

    NASA Technical Reports Server (NTRS)

    Brackbill, Jeremiah U.; Kothe, Douglas B.

    1996-01-01

    In a recent review it is said that free-surface flows 'represent some of the difficult remaining challenges in computational fluid dynamics'. There has been progress with the development of new approaches to treating interfaces, such as the level-set method and the improvement of older methods such as the VOF method. A common theme of many of the new developments has been the regularization of discontinuities at the interface. One example of this approach is the continuum surface force (CSF) formulation for surface tension, which replaces the surface stress given by Laplace's equation by an equivalent volume force. Here, we describe how CSF formulation might be made more useful. Specifically, we consider a derivation of the CSF equations from a minimization of surface energy as outlined by Jacqmin (1996). This reformulation suggests that if one eliminates the computation of curvature in terms of a unit normal vector, parasitic currents may be eliminated. For this reformulation to work, it is necessary that transition region thickness be controlled. Various means for this, in addition to the one discussed by Jacqmin (1996), are discussed.

  19. Alternative models for cyclic lemming dynamics.

    PubMed

    Wang, Hao; Kuang, Yang

    2007-01-01

    Many natural population growths and interactions are affected by seasonal changes, suggesting that these natural population dynamics should be modeled by nonautonomous differential equations instead of autonomous differential equations. Through a series of carefully derived models of the well documented high-amplitude, large-period fluctuations of lemming populations, we argue that when appropriately formulated, autonomous differential equations may capture much of the desirable rich dynamics, such as the existence of a periodic solution with period and amplitude close to that of approximately periodic solutions produced by the more natural but mathematically daunt ing nonautonomous models. We start this series of models from the Barrow model, a well formulated model for the dynamics of food-lemming interaction at Point Barrow (Alaska, USA) with sufficient experimental data. Our work suggests that an autonomous system can indeed be a good approximation to the moss-lemming dynamics at Point Barrow. This, together with our bifurcation analysis, indicates that neither seasonal factors (expressed by time dependent moss growth rate and lemming death rate in the Barrow model) nor the moss growth rate and lemming death rate are the main culprits of the observed multi-year lemming cycles. We suspect that the main culprits may include high lemming predation rate, high lemming birth rate, and low lemming self-limitation rate.

  20. Nonlinear Dynamic Models in Advanced Life Support

    NASA Technical Reports Server (NTRS)

    Jones, Harry

    2002-01-01

    To facilitate analysis, ALS systems are often assumed to be linear and time invariant, but they usually have important nonlinear and dynamic aspects. Nonlinear dynamic behavior can be caused by time varying inputs, changes in system parameters, nonlinear system functions, closed loop feedback delays, and limits on buffer storage or processing rates. Dynamic models are usually cataloged according to the number of state variables. The simplest dynamic models are linear, using only integration, multiplication, addition, and subtraction of the state variables. A general linear model with only two state variables can produce all the possible dynamic behavior of linear systems with many state variables, including stability, oscillation, or exponential growth and decay. Linear systems can be described using mathematical analysis. Nonlinear dynamics can be fully explored only by computer simulations of models. Unexpected behavior is produced by simple models having only two or three state variables with simple mathematical relations between them. Closed loop feedback delays are a major source of system instability. Exceeding limits on buffer storage or processing rates forces systems to change operating mode. Different equilibrium points may be reached from different initial conditions. Instead of one stable equilibrium point, the system may have several equilibrium points, oscillate at different frequencies, or even behave chaotically, depending on the system inputs and initial conditions. The frequency spectrum of an output oscillation may contain harmonics and the sums and differences of input frequencies, but it may also contain a stable limit cycle oscillation not related to input frequencies. We must investigate the nonlinear dynamic aspects of advanced life support systems to understand and counter undesirable behavior.

  1. Flapping Wing Flight Dynamic Modeling

    DTIC Science & Technology

    2011-08-22

    Hummingbird [5]. This particular study focuses on the diculty of determining what models are most impor- tant to consider when trying to accurately...Projects Agency TTO Document, 1996. [5] Nano Hummingbird , Website, 2011. [6] Fry, S. N., Sayaman, R., and Dickinson, M. H., The Aerodynamics of Free...and Jategaonkar, R. V., Evolution of Flight Vehicle System Identication, Journal of Aircraft , Vol. 33, 1996, pp. 928. [40] Hedrick, T. L

  2. Continuous Time Dynamic Topic Models

    DTIC Science & Technology

    2008-06-20

    called topics, can be used to explain the observed collection. LDA is a probabilistic extension of latent semantic indexing (LSI) [5] and probabilistic... latent semantic indexing (pLSI) [11]. Owing to its formal generative semantics, LDA has been extended and applied to authorship [19], email [15...Steyvers. Probabilistic topic models. In Latent Semantic Analysis: A Road to Meaning. 2006. [9] T. L. Griffiths and M. Steyvers. Finding scientific

  3. Feature Extraction for Structural Dynamics Model Validation

    SciTech Connect

    Farrar, Charles; Nishio, Mayuko; Hemez, Francois; Stull, Chris; Park, Gyuhae; Cornwell, Phil; Figueiredo, Eloi; Luscher, D. J.; Worden, Keith

    2016-01-13

    As structural dynamics becomes increasingly non-modal, stochastic and nonlinear, finite element model-updating technology must adopt the broader notions of model validation and uncertainty quantification. For example, particular re-sampling procedures must be implemented to propagate uncertainty through a forward calculation, and non-modal features must be defined to analyze nonlinear data sets. The latter topic is the focus of this report, but first, some more general comments regarding the concept of model validation will be discussed.

  4. The dynamic model of enterprise revenue management

    NASA Astrophysics Data System (ADS)

    Mitsel, A. A.; Kataev, M. Yu; Kozlov, S. V.; Korepanov, K. V.

    2017-01-01

    The article presents the dynamic model of enterprise revenue management. This model is based on the quadratic criterion and linear control law. The model is founded on multiple regression that links revenues with the financial performance of the enterprise. As a result, optimal management is obtained so as to provide the given enterprise revenue, namely, the values of financial indicators that ensure the planned profit of the organization are acquired.

  5. Dynamic exponents for potts model cluster algorithms

    NASA Astrophysics Data System (ADS)

    Coddington, Paul D.; Baillie, Clive F.

    We have studied the Swendsen-Wang and Wolff cluster update algorithms for the Ising model in 2, 3 and 4 dimensions. The data indicate simple relations between the specific heat and the Wolff autocorrelations, and between the magnetization and the Swendsen-Wang autocorrelations. This implies that the dynamic critical exponents are related to the static exponents of the Ising model. We also investigate the possibility of similar relationships for the Q-state Potts model.

  6. A dynamic conceptual model of care planning.

    PubMed

    Elf, Marie; Poutilova, Maria; Ohrn, Kerstin

    2007-12-01

    This article presents a conceptual model of the care planning process developed to identify the hypothetical links between structural, process and outcome factors important to the quality of the process. Based on existing literature, it was hypothesized that a thorough assessment of patients' health needs is an important prerequisite when making a rigorous diagnosis and preparing plans for various care interventions. Other important variables that are assumed to influence the quality of the process are the care culture and professional knowledge. The conceptual model was developed as a system dynamics causal loop diagram as a first essential step towards a computed model. System dynamics offers the potential to describe processes in a nonlinear, dynamic way and is suitable for exploring, comprehending, learning and communicating complex ideas about care processes.

  7. Dynamic Model for Life History of Scyphozoa

    PubMed Central

    Xie, Congbo; Fan, Meng; Wang, Xin; Chen, Ming

    2015-01-01

    A two-state life history model governed by ODEs is formulated to elucidate the population dynamics of jellyfish and to illuminate the triggering mechanism of its blooms. The polyp-medusa model admits trichotomous global dynamic scenarios: extinction, polyps survival only, and both survival. The population dynamics sensitively depend on several biotic and abiotic limiting factors such as substrate, temperature, and predation. The combination of temperature increase, substrate expansion, and predator diminishment acts synergistically to create a habitat that is more favorable for jellyfishes. Reducing artificial marine constructions, aiding predator populations, and directly controlling the jellyfish population would help to manage the jellyfish blooms. The theoretical analyses and numerical experiments yield several insights into the nature underlying the model and shed some new light on the general control strategy for jellyfish. PMID:26114642

  8. Dynamic Model for Life History of Scyphozoa.

    PubMed

    Xie, Congbo; Fan, Meng; Wang, Xin; Chen, Ming

    2015-01-01

    A two-state life history model governed by ODEs is formulated to elucidate the population dynamics of jellyfish and to illuminate the triggering mechanism of its blooms. The polyp-medusa model admits trichotomous global dynamic scenarios: extinction, polyps survival only, and both survival. The population dynamics sensitively depend on several biotic and abiotic limiting factors such as substrate, temperature, and predation. The combination of temperature increase, substrate expansion, and predator diminishment acts synergistically to create a habitat that is more favorable for jellyfishes. Reducing artificial marine constructions, aiding predator populations, and directly controlling the jellyfish population would help to manage the jellyfish blooms. The theoretical analyses and numerical experiments yield several insights into the nature underlying the model and shed some new light on the general control strategy for jellyfish.

  9. Dynamic reliability models with conditional proportional hazards.

    PubMed

    Hollander, M; Peña, E A

    1995-01-01

    A dynamic approach to the stochastic modelling of reliability systems is further explored. This modelling approach is particularly appropriate for load-sharing, software reliability, and multivariate failure-time models, where component failure characteristics are affected by their degree of use, amount of load, or extent of stresses experienced. This approach incorporates the intuitive notion that when a set of components in a coherent system fail at a certain time, there is a 'jump' from one structure function to another which governs the residual lifetimes of the remaining functioning components, and since the component lifetimes are intrinsically affected by the structure function which they constitute, then at such a failure time there should also be a jump in the stochastic structure of the lifetimes of the remaining components. For such dynamically-modelled systems, the stochastic characteristics of their jump times are studied. These properties of the jump times allow us to obtain the properties of the lifetime of the system. In particular, for a Markov dynamic model, specific expressions for the exact distribution function of the jump times are obtained for a general coherent system, a parallel system, and a series-parallel system. We derive a new family of distribution functions which describes the distributions of the jump times for a dynamically-modelled system.

  10. Dynamic modeling of solar dynamic components and systems

    NASA Astrophysics Data System (ADS)

    Hochstein, John I.; Korakianitis, T.

    1992-09-01

    The purpose of this grant was to support NASA in modeling efforts to predict the transient dynamic and thermodynamic response of the space station solar dynamic power generation system. In order to meet the initial schedule requirement of providing results in time to support installation of the system as part of the initial phase of space station, early efforts were executed with alacrity and often in parallel. Initially, methods to predict the transient response of a Rankine as well as a Brayton cycle were developed. Review of preliminary design concepts led NASA to select a regenerative gas-turbine cycle using a helium-xenon mixture as the working fluid and, from that point forward, the modeling effort focused exclusively on that system. Although initial project planning called for a three year period of performance, revised NASA schedules moved system installation to later and later phases of station deployment. Eventually, NASA selected to halt development of the solar dynamic power generation system for space station and to reduce support for this project to two-thirds of the original level.

  11. Record Dynamics and the Parking Lot Model for granular dynamics

    NASA Astrophysics Data System (ADS)

    Sibani, Paolo; Boettcher, Stefan

    Also known for its application to granular compaction (E. Ben-Naim et al., Physica D, 1998), the Parking Lot Model (PLM) describes the random parking of identical cars in a strip with no marked bays. In the thermally activated version considered, cars can be removed at an energy cost and, in thermal equilibrium, their average density increases as temperature decreases. However, equilibration at high density becomes exceedingly slow and the system enters an aging regime induced by a kinematic constraint, the fact that parked cars may not overlap. As parking an extra car reduces the available free space,the next parking event is even harder to achieve. Records in the number of parked cars mark the salient features of the dynamics and are shown to be well described by the log-Poisson statistics known from other glassy systems with record dynamics. Clusters of cars whose positions must be rearranged to make the next insertion possible have a length scale which grows logarithmically with age, while their life-time grows exponentially with size. The implications for a recent cluster model of colloidal dynamics,(S. Boettcher and P. Sibani, J. Phys.: Cond. Matter, 2011 N. Becker et al., J. Phys.: Cond. Matter, 2014) are discussed. Support rom the Villum Foundation is gratefully acknowledged.

  12. Dynamic Modeling of Solar Dynamic Components and Systems

    NASA Technical Reports Server (NTRS)

    Hochstein, John I.; Korakianitis, T.

    1992-01-01

    The purpose of this grant was to support NASA in modeling efforts to predict the transient dynamic and thermodynamic response of the space station solar dynamic power generation system. In order to meet the initial schedule requirement of providing results in time to support installation of the system as part of the initial phase of space station, early efforts were executed with alacrity and often in parallel. Initially, methods to predict the transient response of a Rankine as well as a Brayton cycle were developed. Review of preliminary design concepts led NASA to select a regenerative gas-turbine cycle using a helium-xenon mixture as the working fluid and, from that point forward, the modeling effort focused exclusively on that system. Although initial project planning called for a three year period of performance, revised NASA schedules moved system installation to later and later phases of station deployment. Eventually, NASA selected to halt development of the solar dynamic power generation system for space station and to reduce support for this project to two-thirds of the original level.

  13. Dynamical properties of the Rabi model

    NASA Astrophysics Data System (ADS)

    Hu, Binglu; Zhou, Huili; Chen, Shujie; Xianlong, Gao; Wang, Kelin

    2017-02-01

    We study the dynamical properties of the quantum Rabi model using a systematic expansion method. Based on the observation that the parity symmetry of the Rabi model is kept during evolution of the states, we decompose the initial state and the time-dependent one into positive and negative parity parts expanded by superposition of the coherent states. The evolutions of the corresponding positive and the negative parities are obtained, in which the expansion coefficients in the dynamical equations are known from the derived recurrence relation.

  14. Robot arm dynamic model reduction for control

    NASA Technical Reports Server (NTRS)

    Bejczy, A. K.; Lee, S.

    1983-01-01

    General methods are described by which the mathematical complexities of explicit and exact state equations of robot arms can be reduced to a simplified and compact state equation representation without introducing significant errors into the robot arm dynamic model. The model reduction methods are based on homogeneous coordinates and on the Langrangian algorithm for robot arm dynamics, and utilize matrix, vector and numeric analysis techniques. The derivation of differential vector representation of centripetal and Coriolis forces which has not yet been established in the literature is presented.

  15. Dynamic models of Fabry-Perot interferometers.

    PubMed

    Redding, David; Regehr, Martin; Sievers, Lisa

    2002-05-20

    Long-baseline, high-finesse Fabry-Perot interferometers can be used to make distance measurements that are precise enough to detect gravity waves. This level of sensitivity is achieved in part when the interferometer mirrors are isolated dynamically, with pendulum mounts and high-bandwidth cavity length control servos to reduce the effects of seismic noise. We present dynamical models of the cavity fields and signals of Fabry-Perot interferometers for use in the design and evaluation of length control systems for gravity-wave detectors. Models are described and compared with experimental data.

  16. Quantum model for the price dynamics

    NASA Astrophysics Data System (ADS)

    Choustova, Olga

    2008-10-01

    We apply methods of quantum mechanics to mathematical modelling of price dynamics in a financial market. We propose to describe behavioral financial factors (e.g., expectations of traders) by using the pilot wave (Bohmian) model of quantum mechanics. Our model is a quantum-like model of the financial market, cf. with works of W. Segal, I.E. Segal, E. Haven. In this paper we study the problem of smoothness of price-trajectories in the Bohmian financial model. We show that even the smooth evolution of the financial pilot wave [psi](t,x) (representing expectations of traders) can induce jumps of prices of shares.

  17. Modeling emotional dynamics : currency versus field.

    SciTech Connect

    Sallach, D .L.; Decision and Information Sciences; Univ. of Chicago

    2008-08-01

    Randall Collins has introduced a simplified model of emotional dynamics in which emotional energy, heightened and focused by interaction rituals, serves as a common denominator for social exchange: a generic form of currency, except that it is active in a far broader range of social transactions. While the scope of this theory is attractive, the specifics of the model remain unconvincing. After a critical assessment of the currency theory of emotion, a field model of emotion is introduced that adds expressiveness by locating emotional valence within its cognitive context, thereby creating an integrated orientation field. The result is a model which claims less in the way of motivational specificity, but is more satisfactory in modeling the dynamic interaction between cognitive and emotional orientations at both individual and social levels.

  18. Dynamic model for the popularity of websites.

    PubMed

    Lee, Chang-Yong; Kim, Seungwhan

    2002-03-01

    In this paper, we have studied a dynamic model to explain the observed characteristics of websites in the World Wide Web. The dynamic model consists of the self-growth term for each website and the external force term acting on the website. With simulations of the model, we can explain most of the important characteristics of websites. These characteristics include a power-law distribution of the number of visitors to websites, fluctuation in the fractional growth of individual websites, and the relationship between the age and the popularity of the websites. We also investigated a few variants of the model and showed that the ingredients included in the model adequately explain the behavior of the websites.

  19. Dynamic model for the popularity of websites

    NASA Astrophysics Data System (ADS)

    Lee, Chang-Yong; Kim, Seungwhan

    2002-03-01

    In this paper, we have studied a dynamic model to explain the observed characteristics of websites in the World Wide Web. The dynamic model consists of the self-growth term for each website and the external force term acting on the website. With simulations of the model, we can explain most of the important characteristics of websites. These characteristics include a power-law distribution of the number of visitors to websites, fluctuation in the fractional growth of individual websites, and the relationship between the age and the popularity of the websites. We also investigated a few variants of the model and showed that the ingredients included in the model adequately explain the behavior of the websites.

  20. BDI-modelling of complex intracellular dynamics.

    PubMed

    Jonker, C M; Snoep, J L; Treur, J; Westerhoff, H V; Wijngaards, W C A

    2008-03-07

    A BDI-based continuous-time modelling approach for intracellular dynamics is presented. It is shown how temporalized BDI-models make it possible to model intracellular biochemical processes as decision processes. By abstracting from some of the details of the biochemical pathways, the model achieves understanding in nearly intuitive terms, without losing veracity: classical intentional state properties such as beliefs, desires and intentions are founded in reality through precise biochemical relations. In an extensive example, the complex regulation of Escherichia coli vis-à-vis lactose, glucose and oxygen is simulated as a discrete-state, continuous-time temporal decision manager. Thus a bridge is introduced between two different scientific areas: the area of BDI-modelling and the area of intracellular dynamics.

  1. Dynamic Model Averaging in Large Model Spaces Using Dynamic Occam’s Window*

    PubMed Central

    Onorante, Luca; Raftery, Adrian E.

    2015-01-01

    Bayesian model averaging has become a widely used approach to accounting for uncertainty about the structural form of the model generating the data. When data arrive sequentially and the generating model can change over time, Dynamic Model Averaging (DMA) extends model averaging to deal with this situation. Often in macroeconomics, however, many candidate explanatory variables are available and the number of possible models becomes too large for DMA to be applied in its original form. We propose a new method for this situation which allows us to perform DMA without considering the whole model space, but using a subset of models and dynamically optimizing the choice of models at each point in time. This yields a dynamic form of Occam’s window. We evaluate the method in the context of the problem of nowcasting GDP in the Euro area. We find that its forecasting performance compares well with that of other methods. PMID:26917859

  2. Modeling biological pathway dynamics with timed automata.

    PubMed

    Schivo, Stefano; Scholma, Jetse; Wanders, Brend; Urquidi Camacho, Ricardo A; van der Vet, Paul E; Karperien, Marcel; Langerak, Rom; van de Pol, Jaco; Post, Janine N

    2014-05-01

    Living cells are constantly subjected to a plethora of environmental stimuli that require integration into an appropriate cellular response. This integration takes place through signal transduction events that form tightly interconnected networks. The understanding of these networks requires capturing their dynamics through computational support and models. ANIMO (analysis of Networks with Interactive Modeling) is a tool that enables the construction and exploration of executable models of biological networks, helping to derive hypotheses and to plan wet-lab experiments. The tool is based on the formalism of Timed Automata, which can be analyzed via the UPPAAL model checker. Thanks to Timed Automata, we can provide a formal semantics for the domain-specific language used to represent signaling networks. This enforces precision and uniformity in the definition of signaling pathways, contributing to the integration of isolated signaling events into complex network models. We propose an approach to discretization of reaction kinetics that allows us to efficiently use UPPAAL as the computational engine to explore the dynamic behavior of the network of interest. A user-friendly interface hides the use of Timed Automata from the user, while keeping the expressive power intact. Abstraction to single-parameter kinetics speeds up construction of models that remain faithful enough to provide meaningful insight. The resulting dynamic behavior of the network components is displayed graphically, allowing for an intuitive and interactive modeling experience.

  3. Polarizable protein model for Dissipative Particle Dynamics

    NASA Astrophysics Data System (ADS)

    Peter, Emanuel; Lykov, Kirill; Pivkin, Igor

    2015-11-01

    In this talk, we present a novel polarizable protein model for the Dissipative Particle Dynamics (DPD) simulation technique, a coarse-grained particle-based method widely used in modeling of fluid systems at the mesoscale. We employ long-range electrostatics and Drude oscillators in combination with a newly developed polarizable water model. The protein in our model is resembled by a polarizable backbone and a simplified representation of the sidechains. We define the model parameters using the experimental structures of 2 proteins: TrpZip2 and TrpCage. We validate the model on folding of five other proteins and demonstrate that it successfully predicts folding of these proteins into their native conformations. As a perspective of this model, we will give a short outlook on simulations of protein aggregation in the bulk and near a model membrane, a relevant process in several Amyloid diseases, e.g. Alzheimer's and Diabetes II.

  4. Solvable model for polymorphic dynamics of biofilaments.

    PubMed

    Mohrbach, Hervé; Kulić, Igor M

    2012-03-01

    We investigate an analytically tractable toy model for thermally induced polymorphic dynamics of cooperatively rearranging biofilaments-like microtubules. The proposed four-block model, which can be seen as a coarse-grained approximation of the full polymorphic tube model, permits a complete analytical treatment of all thermodynamic properties including correlation functions and angular Fourier mode distributions. Due to its mathematical tractability the model straightforwardly leads to some physical insights in recently discussed phenomena like the "length dependent persistence length." We show that a polymorphic filament can disguise itself as a classical worm-like chain on small and on large scales and yet display distinct anomalous tell-tale features indicating an inner switching dynamics on intermediate length scales.

  5. The quantum Rabi model: solution and dynamics

    NASA Astrophysics Data System (ADS)

    Xie, Qiongtao; Zhong, Honghua; Batchelor, Murray T.; Lee, Chaohong

    2017-03-01

    This article presents a review of recent developments on various aspects of the quantum Rabi model. Particular emphasis is given on the exact analytic solution obtained in terms of confluent Heun functions. The analytic solutions for various generalisations of the quantum Rabi model are also discussed. Results are also reviewed on the level statistics and the dynamics of the quantum Rabi model. The article concludes with an introductory overview of several experimental realisations of the quantum Rabi model. An outlook towards future developments is also given.

  6. Modeling of Reactor Kinetics and Dynamics

    SciTech Connect

    Matthew Johnson; Scott Lucas; Pavel Tsvetkov

    2010-09-01

    In order to model a full fuel cycle in a nuclear reactor, it is necessary to simulate the short time-scale kinetic behavior of the reactor as well as the long time-scale dynamics that occur with fuel burnup. The former is modeled using the point kinetics equations, while the latter is modeled by coupling fuel burnup equations with the kinetics equations. When the equations are solved simultaneously with a nonlinear equation solver, the end result is a code with the unique capability of modeling transients at any time during a fuel cycle.

  7. Developmental Stages in Dynamic Plant Growth Models

    NASA Astrophysics Data System (ADS)

    Maclean, Heather; Dochain, Denis; Waters, Geoff; Stasiak, Michael; Dixon, Mike; Van Der Straeten, Dominique

    2011-09-01

    During the growth of red beet plants in a closed environment plant growth chamber, a change in metabolism was observed (decreasing photosynthetic quotient) which was not predicted by a previously developed simple dynamic model of photosynthesis and respiration reactions. The incorporation of developmental stages into the model allowed for the representation of this change in metabolism without adding unnecessary complexity. Developmental stages were implemented by dividing the model into two successive sub-models with independent yields. The transition between the phases was detected based on online measurements. Results showed an accurate prediction of carbon dioxide and oxygen fluxes.

  8. Dynamic model of the Earth's upper atmosphere

    NASA Technical Reports Server (NTRS)

    Slowey, J. W.

    1984-01-01

    An initial modification to the MSF/J70 Thermospheric Model, in which the variations due to sudden geomagnetic disturbances upon the Earth's upper atmospheric density structure were modeled is presented. This dynamic model of the geomagnetic variation included is an improved version of one which SAO developed from the analysis of the ESRO 4 mass spectrometer data that was incorporated in the Jacchia 1977 model. The variation with geomagnetic local time as well as with geomagnetic latitude are included, and also the effects due to disturbance of the temperature profiles in the region of energy deposition.

  9. Modeling the Hydrogen Bond within Molecular Dynamics

    ERIC Educational Resources Information Center

    Lykos, Peter

    2004-01-01

    The structure of a hydrogen bond is elucidated within the framework of molecular dynamics based on the model of Rahman and Stillinger (R-S) liquid water treatment. Thus, undergraduates are exposed to the powerful but simple use of classical mechanics to solid objects from a molecular viewpoint.

  10. Modeling of tower relief dynamics: Part 2

    SciTech Connect

    Cassata, J.R.; Dasgupta, S.; Gandhi, S.L. )

    1993-11-01

    Dynamic simulations of individual towers or systems of distillations columns overcome limitations of steady-state models by rigorously determining dynamic responses. These will lead to a realistic quantification of relief header and flare system load and identify the design-setting relief scenario. Determination of distillation tower relief loads based on steady-state simulations or recognized methods of approximation can lead to over designing relief systems by large margins. This can result in unnecessary capital expenditure for relief headers and flare systems that can significantly alter the economics of a proposed project. Such overly conservative requirements may even cause potentially attractive projects to be unnecessarily canceled. In addition, approximate methods or analyses based on steady-state simulations sometimes do not identify the design-setting relief mode. Part 1 introduced the PRV and tower dynamic models. Different strategies were shown that can simplify these models. These strategies include tower segmentation, tray lumping and component lumping. Two case studies illustrate the advantages of dynamic models. The two studies are a depentanizer tower relief study and a delthanizer tower relief study.

  11. DYNAMIC LANDSCAPES, STABILITY AND ECOLOGICAL MODELING

    EPA Science Inventory

    The image of a ball rolling along a series of hills and valleys is an effective heuristic by which to communicate stability concepts in ecology. However, the dynamics of this landscape model have little to do with ecological systems. Other landscape representations, however, are ...

  12. Model Of Neural Network With Creative Dynamics

    NASA Technical Reports Server (NTRS)

    Zak, Michail; Barhen, Jacob

    1993-01-01

    Paper presents analysis of mathematical model of one-neuron/one-synapse neural network featuring coupled activation and learning dynamics and parametrical periodic excitation. Demonstrates self-programming, partly random behavior of suitable designed neural network; believed to be related to spontaneity and creativity of biological neural networks.

  13. Modeling of dynamical processes in laser ablation

    SciTech Connect

    Leboeuf, J.N.; Chen, K.R.; Donato, J.M.; Geohegan, D.B.; Liu, C.L.; Puretzky, A.A.; Wood, R.F.

    1995-12-31

    Various physics and computational approaches have been developed to globally characterize phenomena important for film growth by pulsed-laser deposition of materials. These include thermal models of laser-solid target interactions that initiate the vapor plume, plume ionization and heating through laser absorption beyond local thermodynamic equilibrium mechanisms, hydrodynamic and collisional descriptions of plume transport, and molecular dynamics models of the interaction of plume particles with the deposition substrate.

  14. Population mixture model for nonlinear telomere dynamics

    NASA Astrophysics Data System (ADS)

    Itzkovitz, Shalev; Shlush, Liran I.; Gluck, Dan; Skorecki, Karl

    2008-12-01

    Telomeres are DNA repeats protecting chromosomal ends which shorten with each cell division, eventually leading to cessation of cell growth. We present a population mixture model that predicts an exponential decrease in telomere length with time. We analytically solve the dynamics of the telomere length distribution. The model provides an excellent fit to available telomere data and accounts for the previously unexplained observation of telomere elongation following stress and bone marrow transplantation, thereby providing insight into the nature of the telomere clock.

  15. Modelling Subduction Dynamics: The South American Salsa

    NASA Astrophysics Data System (ADS)

    Hale, A. J.; Shephard, G.; Müller, D.; Liu, L.; Gurnis, M.

    2009-12-01

    Plate kinematic and seismic tomography models imply a gradual overriding of the Phoenix and Farallon slabs by the westward movement of the South American plate. This westward translation over the subducted slabs, and the currently subducting Nazca Plate, is expected to generate a dynamic surface topography effect, leading to time-progressive vertical motions and tilting of sedimentary basins and their hinterlands. We have set up a workflow to model these processes including ground-truthing with geological and geophysical data. A combination of geodynamic modelling software, CitcomS, GPlates (gplates.org) software and the Generic Mapping Tools (GMT) facilitates the modelling and visualisation of linked plate kinematics and mantle convection processes. The CitcomS software also allows us to alternatively use forward models, backward models, or combined forward and adjoint models. Forward models are driven by an imposed plate kinematic model and assumed initial subdution structure, whereas backwards models use mantle tomography as an input and run the model backwards by reversing the gravity field. Similarly, adjoint models use tomography as input, but iterate backwards and forwards in time to reach convergence upon present-day mantle structures. Model outputs include time-dependent mantle temperature, viscosity, and surface dynamic topography. Forward model results show that slab evolution under South America are strongly driven by the age of the subducting lithosphere. Hence, we can simulate flat-slab subduction and in regions close to the Chile triple junction we see a slab window developing, detaching older slab material from more recently subducted material. However, the forward model relies on an accurate description of the initial slab geometry at 140Ma to generate the initial slab pull. Forward and adjoint model results both suggest an alternative mechanism for major Miocene changes in paleo-Amazon river drainage. An eastward-sweeping negative dynamic

  16. Feature extraction for structural dynamics model validation

    SciTech Connect

    Hemez, Francois; Farrar, Charles; Park, Gyuhae; Nishio, Mayuko; Worden, Keith; Takeda, Nobuo

    2010-11-08

    This study focuses on defining and comparing response features that can be used for structural dynamics model validation studies. Features extracted from dynamic responses obtained analytically or experimentally, such as basic signal statistics, frequency spectra, and estimated time-series models, can be used to compare characteristics of structural system dynamics. By comparing those response features extracted from experimental data and numerical outputs, validation and uncertainty quantification of numerical model containing uncertain parameters can be realized. In this study, the applicability of some response features to model validation is first discussed using measured data from a simple test-bed structure and the associated numerical simulations of these experiments. issues that must be considered were sensitivity, dimensionality, type of response, and presence or absence of measurement noise in the response. Furthermore, we illustrate a comparison method of multivariate feature vectors for statistical model validation. Results show that the outlier detection technique using the Mahalanobis distance metric can be used as an effective and quantifiable technique for selecting appropriate model parameters. However, in this process, one must not only consider the sensitivity of the features being used, but also correlation of the parameters being compared.

  17. Nonsmooth dynamics in spiking neuron models

    NASA Astrophysics Data System (ADS)

    Coombes, S.; Thul, R.; Wedgwood, K. C. A.

    2012-11-01

    Large scale studies of spiking neural networks are a key part of modern approaches to understanding the dynamics of biological neural tissue. One approach in computational neuroscience has been to consider the detailed electrophysiological properties of neurons and build vast computational compartmental models. An alternative has been to develop minimal models of spiking neurons with a reduction in the dimensionality of both parameter and variable space that facilitates more effective simulation studies. In this latter case the single neuron model of choice is often a variant of the classic integrate-and-fire model, which is described by a nonsmooth dynamical system. In this paper we review some of the more popular spiking models of this class and describe the types of spiking pattern that they can generate (ranging from tonic to burst firing). We show that a number of techniques originally developed for the study of impact oscillators are directly relevant to their analysis, particularly those for treating grazing bifurcations. Importantly we highlight one particular single neuron model, capable of generating realistic spike trains, that is both computationally cheap and analytically tractable. This is a planar nonlinear integrate-and-fire model with a piecewise linear vector field and a state dependent reset upon spiking. We call this the PWL-IF model and analyse it at both the single neuron and network level. The techniques and terminology of nonsmooth dynamical systems are used to flesh out the bifurcation structure of the single neuron model, as well as to develop the notion of Lyapunov exponents. We also show how to construct the phase response curve for this system, emphasising that techniques in mathematical neuroscience may also translate back to the field of nonsmooth dynamical systems. The stability of periodic spiking orbits is assessed using a linear stability analysis of spiking times. At the network level we consider linear coupling between voltage

  18. Dynamic occupancy models for explicit colonization processes

    USGS Publications Warehouse

    Broms, Kristin M.; Hooten, Mevin B.; Johnson, Devin S.; Altwegg, Res; Conquest, Loveday

    2016-01-01

    The dynamic, multi-season occupancy model framework has become a popular tool for modeling open populations with occupancies that change over time through local colonizations and extinctions. However, few versions of the model relate these probabilities to the occupancies of neighboring sites or patches. We present a modeling framework that incorporates this information and is capable of describing a wide variety of spatiotemporal colonization and extinction processes. A key feature of the model is that it is based on a simple set of small-scale rules describing how the process evolves. The result is a dynamic process that can account for complicated large-scale features. In our model, a site is more likely to be colonized if more of its neighbors were previously occupied and if it provides more appealing environmental characteristics than its neighboring sites. Additionally, a site without occupied neighbors may also become colonized through the inclusion of a long-distance dispersal process. Although similar model specifications have been developed for epidemiological applications, ours formally accounts for detectability using the well-known occupancy modeling framework. After demonstrating the viability and potential of this new form of dynamic occupancy model in a simulation study, we use it to obtain inference for the ongoing Common Myna (Acridotheres tristis) invasion in South Africa. Our results suggest that the Common Myna continues to enlarge its distribution and its spread via short distance movement, rather than long-distance dispersal. Overall, this new modeling framework provides a powerful tool for managers examining the drivers of colonization including short- vs. long-distance dispersal, habitat quality, and distance from source populations.

  19. Direct modeling for computational fluid dynamics

    NASA Astrophysics Data System (ADS)

    Xu, Kun

    2015-06-01

    All fluid dynamic equations are valid under their modeling scales, such as the particle mean free path and mean collision time scale of the Boltzmann equation and the hydrodynamic scale of the Navier-Stokes (NS) equations. The current computational fluid dynamics (CFD) focuses on the numerical solution of partial differential equations (PDEs), and its aim is to get the accurate solution of these governing equations. Under such a CFD practice, it is hard to develop a unified scheme that covers flow physics from kinetic to hydrodynamic scales continuously because there is no such governing equation which could make a smooth transition from the Boltzmann to the NS modeling. The study of fluid dynamics needs to go beyond the traditional numerical partial differential equations. The emerging engineering applications, such as air-vehicle design for near-space flight and flow and heat transfer in micro-devices, do require further expansion of the concept of gas dynamics to a larger domain of physical reality, rather than the traditional distinguishable governing equations. At the current stage, the non-equilibrium flow physics has not yet been well explored or clearly understood due to the lack of appropriate tools. Unfortunately, under the current numerical PDE approach, it is hard to develop such a meaningful tool due to the absence of valid PDEs. In order to construct multiscale and multiphysics simulation methods similar to the modeling process of constructing the Boltzmann or the NS governing equations, the development of a numerical algorithm should be based on the first principle of physical modeling. In this paper, instead of following the traditional numerical PDE path, we introduce direct modeling as a principle for CFD algorithm development. Since all computations are conducted in a discretized space with limited cell resolution, the flow physics to be modeled has to be done in the mesh size and time step scales. Here, the CFD is more or less a direct

  20. Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics

    NASA Astrophysics Data System (ADS)

    Davtyan, Aram; Voth, Gregory A.; Andersen, Hans C.

    2016-12-01

    We recently developed a dynamic force matching technique for converting a coarse-grained (CG) model of a molecular system, with a CG potential energy function, into a dynamic CG model with realistic dynamics [A. Davtyan et al., J. Chem. Phys. 142, 154104 (2015)]. This is done by supplementing the model with additional degrees of freedom, called "fictitious particles." In that paper, we tested the method on CG models in which each molecule is coarse-grained into one CG point particle, with very satisfactory results. When the method was applied to a CG model of methanol that has two CG point particles per molecule, the results were encouraging but clearly required improvement. In this paper, we introduce a new type (called type-3) of fictitious particle that exerts forces on the center of mass of two CG sites. A CG model constructed using type-3 fictitious particles (as well as type-2 particles previously used) gives a much more satisfactory dynamic model for liquid methanol. In particular, we were able to construct a CG model that has the same self-diffusion coefficient and the same rotational relaxation time as an all-atom model of liquid methanol. Type-3 particles and generalizations of it are likely to be useful in converting more complicated CG models into dynamic CG models.

  1. Dynamics of macroautophagy: Modeling and oscillatory behavior

    NASA Astrophysics Data System (ADS)

    Han, Kyungreem; Kwon, Hyun Woong; Kang, Hyuk; Kim, Jinwoong; Lee, Myung-Shik; Choi, M. Y.

    2012-02-01

    We propose a model for macroautophagy and study the resulting dynamics of autophagy in a system isolated from its extra-cellular environment. It is found that the intracellular concentrations of autophagosomes and autolysosomes display oscillations with their own natural frequencies. Such oscillatory behaviors, which are interrelated to the dynamics of intracellular ATP, amino acids, and proteins, are consistent with the very recent biological observations. Implications of this theoretical study of autophagy are discussed, with regard to the possibility of guiding molecular studies of autophagy.

  2. Methodology for Uncertainty Analysis of Dynamic Computational Toxicology Models

    EPA Science Inventory

    The task of quantifying the uncertainty in both parameter estimates and model predictions has become more important with the increased use of dynamic computational toxicology models by the EPA. Dynamic toxicological models include physiologically-based pharmacokinetic (PBPK) mode...

  3. Next Generation Carbon-Nitrogen Dynamics Model

    NASA Astrophysics Data System (ADS)

    Xu, C.; Fisher, R. A.; Vrugt, J. A.; Wullschleger, S. D.; McDowell, N. G.

    2012-12-01

    Nitrogen is a key regulator of vegetation dynamics, soil carbon release, and terrestrial carbon cycles. Thus, to assess energy impacts on the global carbon cycle and future climates, it is critical that we have a mechanism-based and data-calibrated nitrogen model that simulates nitrogen limitation upon both above and belowground carbon dynamics. In this study, we developed a next generation nitrogen-carbon dynamic model within the NCAR Community Earth System Model (CESM). This next generation nitrogen-carbon dynamic model utilized 1) a mechanistic model of nitrogen limitation on photosynthesis with nitrogen trade-offs among light absorption, electron transport, carboxylation, respiration and storage; 2) an optimal leaf nitrogen model that links soil nitrogen availability and leaf nitrogen content; and 3) an ecosystem demography (ED) model that simulates the growth and light competition of tree cohorts and is currently coupled to CLM. Our three test cases with changes in CO2 concentration, growing temperature and radiation demonstrate the model's ability to predict the impact of altered environmental conditions on nitrogen allocations. Currently, we are testing the model against different datasets including soil fertilization and Free Air CO2 enrichment (FACE) experiments across different forest types. We expect that our calibrated model will considerably improve our understanding and predictability of vegetation-climate interactions.itrogen allocation model evaluations. The figure shows the scatter plots of predicted and measured Vc,max and Jmax scaled to 25 oC (i.e.,Vc,max25 and Jmax25) at elevated CO2 (570 ppm, test case one), reduced radiation in canopy (0.1-0.9 of the radiation at the top of canopy, test case two) and reduced growing temperature (15oC, test case three). The model is first calibrated using control data under ambient CO2 (370 ppm), radiation at the top of the canopy (621 μmol photon/m2/s), the normal growing temperature (30oC). The fitted model

  4. Dynamical modelling of galactic disc outskirts

    NASA Astrophysics Data System (ADS)

    Athanassoula, E.

    2017-03-01

    I review briefly some dynamical models of structures in the outer parts of disc galaxies, including models of polar rings, tidal tails and bridges. I then discuss the density distribution in the outer parts of discs. For this, I compare observations to results of a model in which the disc galaxy is in fact the remnant of a major merger, and find good agreement. This comparison includes radial profiles of the projected surface density and of stellar age, as well as time evolution of the break radius and of the inner and outer disc scale lengths. I also compare the radial projected surface density profiles of dynamically motivated mono-age populations and find that, compared to older populations, younger ones have flatter density profiles in the inner region and steeper in the outer one. The break radius, however, does not vary with stellar age, again in good agreement with observations.

  5. Continuum modeling of cooperative traffic flow dynamics

    NASA Astrophysics Data System (ADS)

    Ngoduy, D.; Hoogendoorn, S. P.; Liu, R.

    2009-07-01

    This paper presents a continuum approach to model the dynamics of cooperative traffic flow. The cooperation is defined in our model in a way that the equipped vehicle can issue and receive a warning massage when there is downstream congestion. Upon receiving the warning massage, the (up-stream) equipped vehicle will adapt the current desired speed to the speed at the congested area in order to avoid sharp deceleration when approaching the congestion. To model the dynamics of such cooperative systems, a multi-class gas-kinetic theory is extended to capture the adaptation of the desired speed of the equipped vehicle to the speed at the downstream congested traffic. Numerical simulations are carried out to show the influence of the penetration rate of the equipped vehicles on traffic flow stability and capacity in a freeway.

  6. Learning generative models of molecular dynamics

    PubMed Central

    2012-01-01

    We introduce three algorithms for learning generative models of molecular structures from molecular dynamics simulations. The first algorithm learns a Bayesian-optimal undirected probabilistic model over user-specified covariates (e.g., fluctuations, distances, angles, etc). L1 reg-ularization is used to ensure sparse models and thus reduce the risk of over-fitting the data. The topology of the resulting model reveals important couplings between different parts of the protein, thus aiding in the analysis of molecular motions. The generative nature of the model makes it well-suited to making predictions about the global effects of local structural changes (e.g., the binding of an allosteric regulator). Additionally, the model can be used to sample new conformations. The second algorithm learns a time-varying graphical model where the topology and parameters change smoothly along the trajectory, revealing the conformational sub-states. The last algorithm learns a Markov Chain over undirected graphical models which can be used to study and simulate kinetics. We demonstrate our algorithms on multiple molecular dynamics trajectories. PMID:22369071

  7. Global dynamic modeling of a transmission system

    NASA Technical Reports Server (NTRS)

    Choy, F. K.; Qian, W.

    1993-01-01

    The work performed on global dynamic simulation and noise correlation of gear transmission systems at the University of Akron is outlined. The objective is to develop a comprehensive procedure to simulate the dynamics of the gear transmission system coupled with the effects of gear box vibrations. The developed numerical model is benchmarked with results from experimental tests at NASA Lewis Research Center. The modal synthesis approach is used to develop the global transient vibration analysis procedure used in the model. Modal dynamic characteristics of the rotor-gear-bearing system are calculated by the matrix transfer method while those of the gear box are evaluated by the finite element method (NASTRAN). A three-dimensional, axial-lateral coupled bearing model is used to couple the rotor vibrations with the gear box motion. The vibrations between the individual rotor systems are coupled through the nonlinear gear mesh interactions. The global equations of motion are solved in modal coordinates and the transient vibration of the system is evaluated by a variable time-stepping integration scheme. The relationship between housing vibration and resulting noise of the gear transmission system is generated by linear transfer functions using experimental data. A nonlinear relationship of the noise components to the fundamental mesh frequency is developed using the hypercoherence function. The numerically simulated vibrations and predicted noise of the gear transmission system are compared with the experimental results from the gear noise test rig at NASA Lewis Research Center. Results of the comparison indicate that the global dynamic model developed can accurately simulate the dynamics of a gear transmission system.

  8. Global Langevin model of multidimensional biomolecular dynamics

    NASA Astrophysics Data System (ADS)

    Schaudinnus, Norbert; Lickert, Benjamin; Biswas, Mithun; Stock, Gerhard

    2016-11-01

    Molecular dynamics simulations of biomolecular processes are often discussed in terms of diffusive motion on a low-dimensional free energy landscape F ( 𝒙 ) . To provide a theoretical basis for this interpretation, one may invoke the system-bath ansatz á la Zwanzig. That is, by assuming a time scale separation between the slow motion along the system coordinate x and the fast fluctuations of the bath, a memory-free Langevin equation can be derived that describes the system's motion on the free energy landscape F ( 𝒙 ) , which is damped by a friction field and driven by a stochastic force that is related to the friction via the fluctuation-dissipation theorem. While the theoretical formulation of Zwanzig typically assumes a highly idealized form of the bath Hamiltonian and the system-bath coupling, one would like to extend the approach to realistic data-based biomolecular systems. Here a practical method is proposed to construct an analytically defined global model of structural dynamics. Given a molecular dynamics simulation and adequate collective coordinates, the approach employs an "empirical valence bond"-type model which is suitable to represent multidimensional free energy landscapes as well as an approximate description of the friction field. Adopting alanine dipeptide and a three-dimensional model of heptaalanine as simple examples, the resulting Langevin model is shown to reproduce the results of the underlying all-atom simulations. Because the Langevin equation can also be shown to satisfy the underlying assumptions of the theory (such as a delta-correlated Gaussian-distributed noise), the global model provides a correct, albeit empirical, realization of Zwanzig's formulation. As an application, the model can be used to investigate the dependence of the system on parameter changes and to predict the effect of site-selective mutations on the dynamics.

  9. Dynamic Modeling of Meandering Alluvial Channels

    NASA Astrophysics Data System (ADS)

    Lan, Yongqiang

    1990-01-01

    The migration of meandering alluvial channels is investigated theoretically, numerically, and experimentally. An equation for the rate of bank erosion is derived from a two-dimensional continuity equation for sediment transport linked with the depth-averaged dynamic flow equations. A simple one-dimensional theoretical analysis of meander migration leads to a relationship between the migration rate and the relative channel curvature and sediment properties. The simple model appropriately simulates the pattern and rate of meander expansion and migrations of the White River, Indiana and the East Nishnabotna River, Iowa. Application of the one-dimensional model to sine -generated alluvial channels indicates that meander migration reaches its maximum when the relative radius of curvature reaches about 4.8, or when the sinuosity of meander approaches 1.3. A two-dimensional numerical model, DYNAMIC, which predicts both lateral and longitudinal migration of alluvial channels is then developed, based on a system of quasi -steady depth-averaged flow dynamic equations, a sediment continuity equation, and a bank erosion equation. A linear analysis of the two-dimensional model leads to a convolutional relation between the rate of meander migration and flow and sediment properties. In the two-dimensional numerical analysis, a numerical algorithm called FLOWSOL is developed to solve the flow dynamic equations. The flow algorithm is then linked to the sediment continuity equation and bank erosion equation to simulate bed deformation and bank erosion. The developed two-dimensional model is applied to calculate the velocity profiles in Rozovskii's experiments and the bed deformation and shear stress in Hooke's experiments. Good agreement is obtained between the calculated and measured velocities, shear stresses and bed profiles in all experiments. Small scaled meandering rivers are developed successfully on a floodplain with or without cohesive materials (about 3%) in a wide

  10. Overview of the GRC Stirling Convertor System Dynamic Model

    NASA Technical Reports Server (NTRS)

    Lewandowski, Edward J.; Regan, Timothy F.

    2004-01-01

    A Stirling Convertor System Dynamic Model has been developed at the Glenn Research Center for controls, dynamics, and systems development of free-piston convertor power systems. It models the Stirling cycle thermodynamics, heat flow, gas, mechanical, and mounting dynamics, the linear alternator, and the controller. The model's scope extends from the thermal energy input to thermal, mechanical dynamics, and electrical energy out, allowing one to study complex system interactions among subsystems. The model is a non-linear time-domain model containing sub-cycle dynamics, allowing it to simulate transient and dynamic phenomena that other models cannot. The model details and capability are discussed.

  11. Polarizable water model for Dissipative Particle Dynamics

    NASA Astrophysics Data System (ADS)

    Pivkin, Igor; Peter, Emanuel

    2015-11-01

    Dissipative Particle Dynamics (DPD) is an efficient particle-based method for modeling mesoscopic behavior of fluid systems. DPD forces conserve the momentum resulting in a correct description of hydrodynamic interactions. Polarizability has been introduced into some coarse-grained particle-based simulation methods; however it has not been done with DPD before. We developed a new polarizable coarse-grained water model for DPD, which employs long-range electrostatics and Drude oscillators. In this talk, we will present the model and its applications in simulations of membrane systems, where polarization effects play an essential role.

  12. Informations in Models of Evolutionary Dynamics

    NASA Astrophysics Data System (ADS)

    Rivoire, Olivier

    2016-03-01

    Biological organisms adapt to changes by processing informations from different sources, most notably from their ancestors and from their environment. We review an approach to quantify these informations by analyzing mathematical models of evolutionary dynamics and show how explicit results are obtained for a solvable subclass of these models. In several limits, the results coincide with those obtained in studies of information processing for communication, gambling or thermodynamics. In the most general case, however, information processing by biological populations shows unique features that motivate the analysis of specific models.

  13. A computational model for dynamic vision

    NASA Technical Reports Server (NTRS)

    Moezzi, Saied; Weymouth, Terry E.

    1990-01-01

    This paper describes a novel computational model for dynamic vision which promises to be both powerful and robust. Furthermore the paradigm is ideal for an active vision system where camera vergence changes dynamically. Its basis is the retinotopically indexed object-centered encoding of the early visual information. Specifically, the relative distances of objects to a set of referents is encoded in image registered maps. To illustrate the efficacy of the method, it is applied to the problem of dynamic stereo vision. Integration of depth information over multiple frames obtained by a moving robot generally requires precise information about the relative camera position from frame to frame. Usually, this information can only be approximated. The method facilitates the integration of depth information without direct use or knowledge of camera motion.

  14. Structural system identification: Structural dynamics model validation

    SciTech Connect

    Red-Horse, J.R.

    1997-04-01

    Structural system identification is concerned with the development of systematic procedures and tools for developing predictive analytical models based on a physical structure`s dynamic response characteristics. It is a multidisciplinary process that involves the ability (1) to define high fidelity physics-based analysis models, (2) to acquire accurate test-derived information for physical specimens using diagnostic experiments, (3) to validate the numerical simulation model by reconciling differences that inevitably exist between the analysis model and the experimental data, and (4) to quantify uncertainties in the final system models and subsequent numerical simulations. The goal of this project was to develop structural system identification techniques and software suitable for both research and production applications in code and model validation.

  15. Reduced Dynamic Models in Epithelial Transport

    PubMed Central

    Hernández, Julio A.

    2013-01-01

    Most models developed to represent transport across epithelia assume that the cell interior constitutes a homogeneous compartment, characterized by a single concentration value of the transported species. This conception differs significantly from the current view, in which the cellular compartment is regarded as a highly crowded media of marked structural heterogeneity. Can the finding of relatively simple dynamic properties of transport processes in epithelia be compatible with this complex structural conception of the cell interior? The purpose of this work is to contribute with one simple theoretical approach to answer this question. For this, the techniques of model reduction are utilized to obtain a two-state reduced model from more complex linear models of transcellular transport with a larger number of intermediate states. In these complex models, each state corresponds to the solute concentration in an intermediate intracellular compartment. In addition, the numerical studies reveal that it is possible to approximate a general two-state model under conditions where strict reduction of the complex models cannot be performed. These results contribute with arguments to reconcile the current conception of the cell interior as a highly complex medium with the finding of relatively simple dynamic properties of transport across epithelial cells. PMID:23533397

  16. Bioinactivation: Software for modelling dynamic microbial inactivation.

    PubMed

    Garre, Alberto; Fernández, Pablo S; Lindqvist, Roland; Egea, Jose A

    2017-03-01

    This contribution presents the bioinactivation software, which implements functions for the modelling of isothermal and non-isothermal microbial inactivation. This software offers features such as user-friendliness, modelling of dynamic conditions, possibility to choose the fitting algorithm and generation of prediction intervals. The software is offered in two different formats: Bioinactivation core and Bioinactivation SE. Bioinactivation core is a package for the R programming language, which includes features for the generation of predictions and for the fitting of models to inactivation experiments using non-linear regression or a Markov Chain Monte Carlo algorithm (MCMC). The calculations are based on inactivation models common in academia and industry (Bigelow, Peleg, Mafart and Geeraerd). Bioinactivation SE supplies a user-friendly interface to selected functions of Bioinactivation core, namely the model fitting of non-isothermal experiments and the generation of prediction intervals. The capabilities of bioinactivation are presented in this paper through a case study, modelling the non-isothermal inactivation of Bacillus sporothermodurans. This study has provided a full characterization of the response of the bacteria to dynamic temperature conditions, including confidence intervals for the model parameters and a prediction interval of the survivor curve. We conclude that the MCMC algorithm produces a better characterization of the biological uncertainty and variability than non-linear regression. The bioinactivation software can be relevant to the food and pharmaceutical industry, as well as to regulatory agencies, as part of a (quantitative) microbial risk assessment.

  17. Dynamic Alignment Models for Neural Coding

    PubMed Central

    Kollmorgen, Sepp; Hahnloser, Richard H. R.

    2014-01-01

    Recently, there have been remarkable advances in modeling the relationships between the sensory environment, neuronal responses, and behavior. However, most models cannot encompass variable stimulus-response relationships such as varying response latencies and state or context dependence of the neural code. Here, we consider response modeling as a dynamic alignment problem and model stimulus and response jointly by a mixed pair hidden Markov model (MPH). In MPHs, multiple stimulus-response relationships (e.g., receptive fields) are represented by different states or groups of states in a Markov chain. Each stimulus-response relationship features temporal flexibility, allowing modeling of variable response latencies, including noisy ones. We derive algorithms for learning of MPH parameters and for inference of spike response probabilities. We show that some linear-nonlinear Poisson cascade (LNP) models are a special case of MPHs. We demonstrate the efficiency and usefulness of MPHs in simulations of both jittered and switching spike responses to white noise and natural stimuli. Furthermore, we apply MPHs to extracellular single and multi-unit data recorded in cortical brain areas of singing birds to showcase a novel method for estimating response lag distributions. MPHs allow simultaneous estimation of receptive fields, latency statistics, and hidden state dynamics and so can help to uncover complex stimulus response relationships that are subject to variable timing and involve diverse neural codes. PMID:24625448

  18. Modelling Holocene peatland and permafrost dynamics with the LPJ-GUESS dynamic vegetation model

    NASA Astrophysics Data System (ADS)

    Chaudhary, Nitin; Miller, Paul A.; Smith, Benjamin

    2016-04-01

    Dynamic global vegetation models (DGVMs) are an important platform to study past, present and future vegetation patterns together with associated biogeochemical cycles and climate feedbacks (e.g. Sitch et al. 2008, Smith et al. 2001). However, very few attempts have been made to simulate peatlands using DGVMs (Kleinen et al. 2012, Tang et al. 2015, Wania et al. 2009a). In the present study, we have improved the peatland dynamics in the state-of-the-art dynamic vegetation model (LPJ-GUESS) in order to understand the long-term evolution of northern peatland ecosystems and to assess the effect of changing climate on peatland carbon balance. We combined a dynamic multi-layer approach (Frolking et al. 2010, Hilbert et al. 2000) with soil freezing-thawing functionality (Ekici et al. 2015, Wania et al. 2009a) in LPJ-GUESS. The new model is named LPJ-GUESS Peatland (LPJ-GUESS-P) (Chaudhary et al. in prep). The model was calibrated and tested at the sub-arctic mire in Stordalen, Sweden, and the model was able to capture the reported long-term vegetation dynamics and peat accumulation patterns in the mire (Kokfelt et al. 2010). For evaluation, the model was run at 13 grid points across a north to south transect in Europe. The modelled peat accumulation values were found to be consistent with the published data for each grid point (Loisel et al. 2014). Finally, a series of additional experiments were carried out to investigate the vulnerability of high-latitude peatlands to climate change. We find that the Stordalen mire will sequester more carbon in the future due to milder and wetter climate conditions, longer growing seasons, and the carbon fertilization effect. References: - Chaudhary et al. (in prep.). Modelling Holocene peatland and permafrost dynamics with the LPJ-GUESS dynamic vegetation model - Ekici A, et al. 2015. Site-level model intercomparison of high latitude and high altitude soil thermal dynamics in tundra and barren landscapes. The Cryosphere 9: 1343

  19. Activated Dynamics in Dense Model Nanocomposites

    NASA Astrophysics Data System (ADS)

    Xie, Shijie; Schweizer, Kenneth

    The nonlinear Langevin equation approach is applied to investigate the ensemble-averaged activated dynamics of small molecule liquids (or disconnected segments in a polymer melt) in dense nanocomposites under model isobaric conditions where the spherical nanoparticles are dynamically fixed. Fully thermalized and quenched-replica integral equation theory methods are employed to investigate the influence on matrix dynamics of the equilibrium and nonequilibrium nanocomposite structure, respectively. In equilibrium, the miscibility window can be narrow due to depletion and bridging attraction induced phase separation which limits the study of activated dynamics to regimes where the barriers are relatively low. In contrast, by using replica integral equation theory, macroscopic demixing is suppressed, and the addition of nanoparticles can induce much slower activated matrix dynamics which can be studied over a wide range of pure liquid alpha relaxation times, interfacial attraction strengths and ranges, particle sizes and loadings, and mixture microstructures. Numerical results for the mean activated relaxation time, transient localization length, matrix elasticity and kinetic vitrification in the nanocomposite will be presented.

  20. Dynamic Modeling of an Evapotranspiration Cap

    SciTech Connect

    Jacob J. Jacobson; Steven Piet; Rafael Soto; Gerald Sehlke; Harold Heydt; John Visser

    2005-10-01

    The U.S. Department of Energy is scheduled to design and install hundreds of landfill caps/barriers over the next several decades and these caps will have a design life expectancy of up to 1,000 years. Other landfill caps with 30 year design lifetimes are reaching the end of their original design life; the changes to these caps need to be understood to provide a basis for lifetime extension. Defining the attributes that make a successful cap (one that isolates the waste from the environment) is crucial to these efforts. Because cap systems such as landfill caps are dynamic in nature, it is impossible to understand, monitor, and update lifetime predictions without understanding the dynamics of cap degradation, which is most often due to multiple interdependent factors rather than isolated independent events. In an attempt to understand the dynamics of cap degradation, a computer model using system dynamics is being developed to capture the complex behavior of an evapotranspiration cap. The specific objectives of this project are to capture the dynamic, nonlinear feedback loop structures underlying an evapotranspiration cap and, through computer simulation, gain a better understanding of long-term behavior, influencing factors, and, ultimately, long-term cap performance.

  1. Modeling of intensified high dynamic star tracker.

    PubMed

    Yan, Jinyun; Jiang, Jie; Zhang, Guangjun

    2017-01-23

    An intensified high dynamic star tracker (IHDST) is a photoelectric instrument and stably outputs three-axis attitude for a spacecraft at very high angular velocity. The IHDST uses an image intensifier to multiply the incident starlight. Thus, high sensitivity of the star detection is achieved under short exposure time such that extremely high dynamic performance is achieved. The IHDST differs from a traditional star tracker in terms of the imaging process. Therefore, we establish a quantum transfer model of IHDST based on stochastic process theory. By this model, the probability distribution of the output quantum number is obtained accurately. Then, we introduce two-dimensional Lorentz functions to describe the spatial spreading process of the IHDST. Considering the interaction of these two processes, a complete star imaging model of IHDST is provided. Using this model, the centroiding accuracy of the IHDST is analyzed in detail. Accordingly, a working parameter optimizing strategy is developed for high centroiding accuracy and improved dynamic performance. Finally, the laboratory tests and the night sky experiment support the conclusions.

  2. Dynamical Causal Modeling from a Quantum Dynamical Perspective

    SciTech Connect

    Demiralp, Emre; Demiralp, Metin

    2010-09-30

    Recent research suggests that any set of first order linear vector ODEs can be converted to a set of specific vector ODEs adhering to what we have called ''Quantum Harmonical Form (QHF)''. QHF has been developed using a virtual quantum multi harmonic oscillator system where mass and force constants are considered to be time variant and the Hamiltonian is defined as a conic structure over positions and momenta to conserve the Hermiticity. As described in previous works, the conversion to QHF requires the matrix coefficient of the first set of ODEs to be a normal matrix. In this paper, this limitation is circumvented using a space extension approach expanding the potential applicability of this method. Overall, conversion to QHF allows the investigation of a set of ODEs using mathematical tools available to the investigation of the physical concepts underlying quantum harmonic oscillators. The utility of QHF in the context of dynamical systems and dynamical causal modeling in behavioral and cognitive neuroscience is briefly discussed.

  3. The dynamic radiation environment assimilation model (DREAM)

    SciTech Connect

    Reeves, Geoffrey D; Koller, Josef; Tokar, Robert L; Chen, Yue; Henderson, Michael G; Friedel, Reiner H

    2010-01-01

    The Dynamic Radiation Environment Assimilation Model (DREAM) is a 3-year effort sponsored by the US Department of Energy to provide global, retrospective, or real-time specification of the natural and potential nuclear radiation environments. The DREAM model uses Kalman filtering techniques that combine the strengths of new physical models of the radiation belts with electron observations from long-term satellite systems such as GPS and geosynchronous systems. DREAM includes a physics model for the production and long-term evolution of artificial radiation belts from high altitude nuclear explosions. DREAM has been validated against satellites in arbitrary orbits and consistently produces more accurate results than existing models. Tools for user-specific applications and graphical displays are in beta testing and a real-time version of DREAM has been in continuous operation since November 2009.

  4. Atomic-scale dynamics of a model glass-forming metallic liquid: Dynamical crossover, dynamical decoupling, and dynamical clustering

    NASA Astrophysics Data System (ADS)

    Jaiswal, Abhishek; Egami, Takeshi; Zhang, Yang

    2015-04-01

    The phase behavior of multicomponent metallic liquids is exceedingly complex because of the convoluted many-body and many-elemental interactions. Herein, we present systematic studies of the dynamical aspects of a model ternary metallic liquid Cu40Zr51Al9 using molecular dynamics simulations with embedded atom method. We observed a dynamical crossover from Arrhenius to super-Arrhenius behavior in the transport properties (self diffusion coefficient, self relaxation time, and shear viscosity) bordered at Tx˜1300 K. Unlike in many molecular and macromolecular liquids, this crossover phenomenon occurs well above the melting point of the system (Tm˜900 K) in the equilibrium liquid state; and the crossover temperature Tx is roughly twice of the glass-transition temperature of the system (Tg). Below Tx, we found the elemental dynamics decoupled and the Stokes-Einstein relation broke down, indicating the onset of heterogeneous spatially correlated dynamics in the system mediated by dynamic communications among local configurational excitations. To directly characterize and visualize the correlated dynamics, we employed a nonparametric, unsupervised machine learning technique and identified dynamical clusters of atoms with similar atomic mobility. The revealed average dynamical cluster size shows an accelerated increase below Tx and mimics the trend observed in other ensemble averaged quantities that are commonly used to quantify the spatially heterogeneous dynamics such as the non-Gaussian parameter α2 and the four-point correlation function χ4.

  5. Atomic-scale dynamics of a model glass-forming metallic liquid: Dynamical crossover, dynamical decoupling, and dynamical clustering

    DOE PAGES

    Jaiswal, Abhishek; Egami, Takeshi; Zhang, Yang

    2015-04-01

    The phase behavior of multi-component metallic liquids is exceedingly complex because of the convoluted many-body and many-elemental interactions. Herein, we present systematic studies of the dynamic aspects of such a model ternary metallic liquid Cu40Zr51Al9 using molecular dynamics simulation with embedded atom method. We observed a dynamical crossover from Arrhenius to super-Arrhenius behavior in the transport properties (diffusion coefficient, relaxation times, and shear viscosity) bordered at Tx ~1300K. Unlike in many molecular and macromolecular liquids, this crossover phenomenon occurs in the equilibrium liquid state well above the melting temperature of the system (Tm ~ 900K), and the crossover temperature ismore » roughly twice of the glass-transition temperature (Tg). Below Tx, we found the elemental dynamics decoupled and the Stokes-Einstein relation broke down, indicating the onset of heterogeneous spatially correlated dynamics in the system mediated by dynamic communications among local configurational excitations. To directly characterize and visualize the correlated dynamics, we employed a non-parametric, unsupervised machine learning technique and identified dynamical clusters of atoms with similar atomic mobility. The revealed average dynamical cluster size shows an accelerated increase below Tx and mimics the trend observed in other ensemble averaged quantities that are commonly used to quantify the spatially heterogeneous dynamics such as the non-Gaussian parameter and the four-point correlation function.« less

  6. Dynamic plasmapause model based on THEMIS measurements

    NASA Astrophysics Data System (ADS)

    Liu, W.; Liu, X.

    2015-12-01

    We will present a dynamic plasmapause location model established based on five years of THEMIS measurements from 2009 to 2013. In total, 5878 plasmapause crossing events are identified, sufficiently covering all 24 Magnetic Local Time (MLT) sectors. Based on this plasmapause crossing database, we investigate the correlations between plasmapause locations with solar wind parameters and geomagnetic indices. Input parameters for the best fits are obtained for different MLT sectors and finally we choose five input parameters to build a plasmapause location model, including five-minute-averaged SYM-H, AL and AU indices as well as hourly-averaged AE and Kp indices. An out-of-sample comparison on the evolution of the plasmapause is shown during April 2001 magnetic storm, demonstrating good agreement between model results and observations. Two major advantages are achieved by this model. First, this model provides plasmapause locations at 24 MLT sectors, still providing good consistency with observations. Second, this model is able to reproduce dynamic variations of plasmapause in the time scale as short as five minutes.

  7. Modeling the dynamical systems on experimental data

    NASA Astrophysics Data System (ADS)

    Janson, Natalie B.; Anishchenko, Vadim S.

    1996-06-01

    An attempt is made in the work to create qualitative models of some real biological systems, i.e., isolated frog's heart, a human's heart and a blood circulation system of a white rat. Sampled one-dimensional realizations of these systems were taken as the initial data. Correlation dimensions were calculated to evaluate the embedding dimensions of the systems' attractors. The result of the work are the systems of ordinary differential equations which approximately describe the dynamics of the systems under investigation.

  8. Molecular dynamics modelling of solidification in metals

    SciTech Connect

    Boercker, D.B.; Belak, J.; Glosli, J.

    1997-12-31

    Molecular dynamics modeling is used to study the solidification of metals at high pressure and temperature. Constant pressure MD is applied to a simulation cell initially filled with both solid and molten metal. The solid/liquid interface is tracked as a function of time, and the data are used to estimate growth rates of crystallites at high pressure and temperature in Ta and Mg.

  9. DYNAMICAL MODELING OF GALAXY MERGERS USING IDENTIKIT

    SciTech Connect

    Privon, G. C.; Evans, A. S.; Barnes, J. E.; Hibbard, J. E.; Yun, M. S.; Mazzarella, J. M.; Armus, L.; Surace, J.

    2013-07-10

    We present dynamical models of four interacting systems: NGC 5257/8, The Mice, the Antennae, and NGC 2623. The parameter space of the encounters are constrained using the Identikit model-matching and visualization tool. Identikit utilizes hybrid N-body and test particle simulations to enable rapid exploration of the parameter space of galaxy mergers. The Identikit-derived matches of these systems are reproduced with self-consistent collisionless simulations which show very similar results. The models generally reproduce the observed morphology and H I kinematics of the tidal tails in these systems with reasonable properties inferred for the progenitor galaxies. The models presented here are the first to appear in the literature for NGC 5257/8 and NGC 2623, and The Mice and the Antennae are compared with previously published models. Based on the assumed mass model and our derived initial conditions, the models indicate that the four systems are currently being viewed 175-260 Myr after first passage and cover a wide range of merger stages. In some instances there are mismatches between the models and the data (e.g., in the length of a tail); these are likely due to our adoption of a single mass model for all galaxies. Despite the use of a single mass model, these results demonstrate the utility of Identikit in constraining the parameter space for galaxy mergers when applied to real data.

  10. Dynamic Factor Analysis Models with Time-Varying Parameters

    ERIC Educational Resources Information Center

    Chow, Sy-Miin; Zu, Jiyun; Shifren, Kim; Zhang, Guangjian

    2011-01-01

    Dynamic factor analysis models with time-varying parameters offer a valuable tool for evaluating multivariate time series data with time-varying dynamics and/or measurement properties. We use the Dynamic Model of Activation proposed by Zautra and colleagues (Zautra, Potter, & Reich, 1997) as a motivating example to construct a dynamic factor…

  11. Modeling the dynamics of bivalent histone modifications.

    PubMed

    Ku, Wai Lim; Girvan, Michelle; Yuan, Guo-Cheng; Sorrentino, Francesco; Ott, Edward

    2013-01-01

    Epigenetic modifications to histones may promote either activation or repression of the transcription of nearby genes. Recent experimental studies show that the promoters of many lineage-control genes in stem cells have "bivalent domains" in which the nucleosomes contain both active (H3K4me3) and repressive (H3K27me3) marks. It is generally agreed that bivalent domains play an important role in stem cell differentiation, but the underlying mechanisms remain unclear. Here we formulate a mathematical model to investigate the dynamic properties of histone modification patterns. We then illustrate that our modeling framework can be used to capture key features of experimentally observed combinatorial chromatin states.

  12. A dynamics model for fine coal flotation

    SciTech Connect

    Youjun, T.; Maixi, L.

    1999-07-01

    Through a large amount of experiments, this article studied the effect of the entrapment of water flow on the fine coal flotation during the flotation, and also investigated the relation between the constant of water flotation rate and different operation variables, and resulted in its equation. The water-recycling model is determined, and finally, the dynamics model on relation between the recovery of fine particle and the water recovery in concentration is established. The equation about ash of fine clean coal in any flotation time is derived by introduction of de-ashed coefficient.

  13. Approaches for modeling magnetic nanoparticle dynamics

    PubMed Central

    Reeves, Daniel B; Weaver, John B

    2014-01-01

    Magnetic nanoparticles are useful biological probes as well as therapeutic agents. There have been several approaches used to model nanoparticle magnetization dynamics for both Brownian as well as Néel rotation. The magnetizations are often of interest and can be compared with experimental results. Here we summarize these approaches including the Stoner-Wohlfarth approach, and stochastic approaches including thermal fluctuations. Non-equilibrium related temperature effects can be described by a distribution function approach (Fokker-Planck equation) or a stochastic differential equation (Langevin equation). Approximate models in several regimes can be derived from these general approaches to simplify implementation. PMID:25271360

  14. Dynamical α -cluster model of 16O

    NASA Astrophysics Data System (ADS)

    Halcrow, C. J.; King, C.; Manton, N. S.

    2017-03-01

    We calculate the low-lying spectrum of the 16O nucleus using an α -cluster model which includes the important tetrahedral and square configurations. Our approach is motivated by the dynamics of α -particle scattering in the Skyrme model. We are able to replicate the large energy splitting that is observed between states of identical spin but opposite parities. We also provide a novel interpretation of the first excited state of 16O and make predictions for the energies of 6- states that have yet to be observed experimentally.

  15. Simple models for biomembrane structure and dynamics

    NASA Astrophysics Data System (ADS)

    Brown, Frank L. H.

    2007-07-01

    Simulation of biomembranes over length and time scales relevant to cellular biology is not currently feasible with molecular dynamics including full atomic detail. Barring an unforeseen revolution in the computer industry, this situation will not change for many decades. We present two coarse grained simulation models for biomembranes that treat water implicitly (i.e. no water molecules appear in our simulations. The hydrophobic effect, hydrodynamics and related properties are approximately included without simulation of solvent). These models enable the study of systems and phenomena previously intractable to simulation. The influence of membrane bound proteins on lipid ordering and the diffusion of membrane bound proteins is discussed.

  16. A dynamical model for bark beetle outbreaks.

    PubMed

    Křivan, Vlastimil; Lewis, Mark; Bentz, Barbara J; Bewick, Sharon; Lenhart, Suzanne M; Liebhold, Andrew

    2016-10-21

    Tree-killing bark beetles are major disturbance agents affecting coniferous forest ecosystems. The role of environmental conditions on driving beetle outbreaks is becoming increasingly important as global climatic change alters environmental factors, such as drought stress, that, in turn, govern tree resistance. Furthermore, dynamics between beetles and trees are highly nonlinear, due to complex aggregation behaviors exhibited by beetles attacking trees. Models have a role to play in helping unravel the effects of variable tree resistance and beetle aggregation on bark beetle outbreaks. In this article we develop a new mathematical model for bark beetle outbreaks using an analogy with epidemiological models. Because the model operates on several distinct time scales, singular perturbation methods are used to simplify the model. The result is a dynamical system that tracks populations of uninfested and infested trees. A limiting case of the model is a discontinuous function of state variables, leading to solutions in the Filippov sense. The model assumes an extensive seed-bank so that tree recruitment is possible even if trees go extinct. Two scenarios are considered for immigration of new beetles. The first is a single tree stand with beetles immigrating from outside while the second considers two forest stands with beetle dispersal between them. For the seed-bank driven recruitment rate, when beetle immigration is low, the forest stand recovers to a beetle-free state. At high beetle immigration rates beetle populations approach an endemic equilibrium state. At intermediate immigration rates, the model predicts bistability as the forest can be in either of the two equilibrium states: a healthy forest, or a forest with an endemic beetle population. The model bistability leads to hysteresis. Interactions between two stands show how a less resistant stand of trees may provide an initial toe-hold for the invasion, which later leads to a regional beetle outbreak in the

  17. Directed network discovery with dynamic network modelling.

    PubMed

    Anzellotti, Stefano; Kliemann, Dorit; Jacoby, Nir; Saxe, Rebecca

    2017-02-16

    Cognitive tasks recruit multiple brain regions. Understanding how these regions influence each other (the network structure) is an important step to characterize the neural basis of cognitive processes. Often, limited evidence is available to restrict the range of hypotheses a priori, and techniques that sift efficiently through a large number of possible network structures are needed (network discovery). This article introduces a novel modelling technique for network discovery (Dynamic Network Modelling or DNM) that builds on ideas from Granger Causality and Dynamic Causal Modelling introducing three key changes: (1) efficient network discovery is implemented with statistical tests on the consistency of model parameters across participants, (2) the tests take into account the magnitude and sign of each influence, and (3) variance explained in independent data is used as an absolute (rather than relative) measure of the quality of the network model. In this article, we outline the functioning of DNM, we validate DNM in simulated data for which the ground truth is known, and we report an example of its application to the investigation of influences between regions during emotion recognition, revealing top-down influences from brain regions encoding abstract representations of emotions (medial prefrontal cortex and superior temporal sulcus) onto regions engaged in the perceptual analysis of facial expressions (occipital face area and fusiform face area) when participants are asked to switch between reporting the emotional valence and the age of a face.

  18. Restoration of the Potosi Dynamic Model 2010

    SciTech Connect

    Adushita, Yasmin; Leetaru, Hannes

    2014-09-30

    In topical Report DOE/FE0002068-1 [2] technical performance evaluations on the Cambrian Potosi Formation were performed through reservoir modeling. The data included formation tops from mud logs, well logs from the VW1 and the CCS1 wells, structural and stratigraphic formation from three dimensional (3D) seismic data, and field data from several waste water injection wells for Potosi Formation. Intention was for two million tons per annum (MTPA) of CO2 to be injected for 20 years. In this Task the 2010 Potosi heterogeneous model (referred to as the "Potosi Dynamic Model 2010" in this report) was re-run using a new injection scenario; 3.2 MTPA for 30 years. The extent of the Potosi Dynamic Model 2010, however, appeared too small for the new injection target. It was not sufficiently large enough to accommodate the evolution of the plume. Also, it might have overestimated the injection capacity by enhancing too much the pressure relief due to the relatively close proximity between the injector and the infinite acting boundaries. The new model, Potosi Dynamic Model 2013a, was built by extending the Potosi Dynamic Model 2010 grid to 30 miles x 30 miles (48 km by 48 km), while preserving all property modeling workflows and layering. This model was retained as the base case. Potosi Dynamic Model 2013.a gives an average CO2 injection rate of 1.4 MTPA and cumulative injection of 43 Mt in 30 years, which corresponds to 45% of the injection target. This implies that according to this preliminary model, a minimum of three (3) wells could be required to achieve the injection target. The injectivity evaluation of the Potosi formation will be revisited in topical Report 15 during which more data will be integrated in the modeling exercise. A vertical flow performance evaluation could be considered for the succeeding task to determine the appropriate tubing size, the required injection tubing head pressure (THP) and to investigate whether the corresponding well injection rate

  19. Dynamical models of happiness with fractional order

    NASA Astrophysics Data System (ADS)

    Song, Lei; Xu, Shiyun; Yang, Jianying

    2010-03-01

    This present study focuses on a dynamical model of happiness described through fractional-order differential equations. By categorizing people of different personality and different impact factor of memory (IFM) with different set of model parameters, it is demonstrated via numerical simulations that such fractional-order models could exhibit various behaviors with and without external circumstance. Moreover, control and synchronization problems of this model are discussed, which correspond to the control of emotion as well as emotion synchronization in real life. This study is an endeavor to combine the psychological knowledge with control problems and system theories, and some implications for psychotherapy as well as hints of a personal approach to life are both proposed.

  20. Transition matrix model for evolutionary game dynamics

    NASA Astrophysics Data System (ADS)

    Ermentrout, G. Bard; Griffin, Christopher; Belmonte, Andrew

    2016-03-01

    We study an evolutionary game model based on a transition matrix approach, in which the total change in the proportion of a population playing a given strategy is summed directly over contributions from all other strategies. This general approach combines aspects of the traditional replicator model, such as preserving unpopulated strategies, with mutation-type dynamics, which allow for nonzero switching to unpopulated strategies, in terms of a single transition function. Under certain conditions, this model yields an endemic population playing non-Nash-equilibrium strategies. In addition, a Hopf bifurcation with a limit cycle may occur in the generalized rock-scissors-paper game, unlike the replicator equation. Nonetheless, many of the Folk Theorem results are shown to hold for this model.

  1. An efficient model of drillstring dynamics

    NASA Astrophysics Data System (ADS)

    Butlin, T.; Langley, R. S.

    2015-11-01

    High amplitude vibration regimes can cause significant damage to oilwell drillstrings: torsional stick-slip oscillation, forward whirl and backward whirl are each associated with different kinds of damage. There is a need for models of drillstring dynamics that can predict this variety of phenomena that are: efficient enough to carry out parametric studies; simple enough to provide insight into the underlying physics, and which retain sufficient detail to correlate to real drillstrings. The modelling strategy presented in this paper attempts to balance these requirements. It includes the dynamics of the full length of the drillstring over a wide bandwidth but assumes that the main nonlinear effects are due to spatially localised regions of strong nonlinearity, for example at the drillbit cutting interface and at stabilisers where the borehole wall clearance is smallest. The equations of motion can be formed in terms of this reduced set of degrees of freedom, coupled to the nonlinear contact laws and solved by time-domain integration. Two implementations of this approach are presented, using (1) digital filters and (2) a finite element model to describe the linear dynamics. Choosing a sampling period that is less than the group delay between nonlinear degrees of freedom results in a decoupled set of equations that can be solved very efficiently. Several cases are presented which demonstrate a variety of phenomena, including stick-slip oscillation; forward whirl and backward whirl. Parametric studies are shown which reveal the conditions which lead to high amplitude vibration regimes, and an analytic regime boundary is derived for torsional stick-slip oscillation. The digital filter and finite element models are shown to be in good agreement and are similarly computationally efficient. The digital filter approach has the advantage of more intuitive interpretation, while the finite element model is more readily implemented using existing software packages.

  2. AFDM: An Advanced Fluid-Dynamics Model

    SciTech Connect

    Bohl, W.R.; Parker, F.R. ); Wilhelm, D. . Inst. fuer Neutronenphysik und Reaktortechnik); Berthier, J. ); Goutagny, L. . Inst. de Protection et de Surete Nucleaire); Ninokata,

    1990-09-01

    AFDM, or the Advanced Fluid-Dynamics Model, is a computer code that investigates new approaches simulating the multiphase-flow fluid-dynamics aspects of severe accidents in fast reactors. The AFDM formalism starts with differential equations similar to those in the SIMMER-II code. These equations are modified to treat three velocity fields and supplemented with a variety of new models. The AFDM code has 12 topologies describing what material contacts are possible depending on the presence or absence of a given material in a computational cell, on the dominant liquid, and on the continuous phase. Single-phase, bubbly, churn-turbulent, cellular, and dispersed flow regimes are permitted for the pool situations modeled. Virtual mass terms are included for vapor in liquid-continuous flow. Interfacial areas between the continuous and discontinuous phases are convected to allow some tracking of phenomenological histories. Interfacial areas are also modified by models of nucleation, dynamic forces, turbulence, flashing, coalescence, and mass transfer. Heat transfer is generally treated using engineering correlations. Liquid-vapor phase transitions are handled with the nonequilibrium, heat-transfer-limited model, whereas melting and freezing processes are based on equilibrium considerations. Convection is treated using a fractional-step method of time integration, including a semi-implicit pressure iteration. A higher-order differencing option is provided to control numerical diffusion. The Los Alamos SESAME equation-of-state has been implemented using densities and temperatures as the independent variables. AFDM programming has vectorized all computational loops consistent with the objective of producing an exportable code. 24 refs., 4 figs.

  3. Dynamic geometry, brain function modeling, and consciousness.

    PubMed

    Roy, Sisir; Llinás, Rodolfo

    2008-01-01

    Pellionisz and Llinás proposed, years ago, a geometric interpretation towards understanding brain function. This interpretation assumes that the relation between the brain and the external world is determined by the ability of the central nervous system (CNS) to construct an internal model of the external world using an interactive geometrical relationship between sensory and motor expression. This approach opened new vistas not only in brain research but also in understanding the foundations of geometry itself. The approach named tensor network theory is sufficiently rich to allow specific computational modeling and addressed the issue of prediction, based on Taylor series expansion properties of the system, at the neuronal level, as a basic property of brain function. It was actually proposed that the evolutionary realm is the backbone for the development of an internal functional space that, while being purely representational, can interact successfully with the totally different world of the so-called "external reality". Now if the internal space or functional space is endowed with stochastic metric tensor properties, then there will be a dynamic correspondence between events in the external world and their specification in the internal space. We shall call this dynamic geometry since the minimal time resolution of the brain (10-15 ms), associated with 40 Hz oscillations of neurons and their network dynamics, is considered to be responsible for recognizing external events and generating the concept of simultaneity. The stochastic metric tensor in dynamic geometry can be written as five-dimensional space-time where the fifth dimension is a probability space as well as a metric space. This extra dimension is considered an imbedded degree of freedom. It is worth noticing that the above-mentioned 40 Hz oscillation is present both in awake and dream states where the central difference is the inability of phase resetting in the latter. This framework of dynamic

  4. A range extender hybrid electric vehicle dynamic model

    SciTech Connect

    Powell, B.K.; Pilutti, T.E.

    1994-12-31

    This paper describes a dynamic model possessing the key system components of a Range Extender Hybrid Electric Vehicle. The model is suitable for dynamic analysis, control law synthesis, and prototype simulation.

  5. Dynamic Modeling of the SMAP Rotating Flexible Antenna

    NASA Technical Reports Server (NTRS)

    Nayeri, Reza D.

    2012-01-01

    Dynamic model development in ADAMS for the SMAP project is explained: The main objective of the dynamic models are for pointing error assessment, and the control/stability margin requirement verifications

  6. Comet Gas and Dust Dynamics Modeling

    NASA Technical Reports Server (NTRS)

    Von Allmen, Paul A.; Lee, Seungwon

    2010-01-01

    This software models the gas and dust dynamics of comet coma (the head region of a comet) in order to support the Microwave Instrument for Rosetta Orbiter (MIRO) project. MIRO will study the evolution of the comet 67P/Churyumov-Gerasimenko's coma system. The instrument will measure surface temperature, gas-production rates and relative abundances, and velocity and excitation temperatures of each species along with their spatial temporal variability. This software will use these measurements to improve the understanding of coma dynamics. The modeling tool solves the equation of motion of a dust particle, the energy balance equation of the dust particle, the continuity equation for the dust and gas flow, and the dust and gas mixture energy equation. By solving these equations numerically, the software calculates the temperature and velocity of gas and dust as a function of time for a given initial gas and dust production rate, and a dust characteristic parameter that measures the ability of a dust particle to adjust its velocity to the local gas velocity. The software is written in a modular manner, thereby allowing the addition of more dynamics equations as needed. All of the numerical algorithms are added in-house and no third-party libraries are used.

  7. Consequence modeling using the fire dynamics simulator.

    PubMed

    Ryder, Noah L; Sutula, Jason A; Schemel, Christopher F; Hamer, Andrew J; Van Brunt, Vincent

    2004-11-11

    The use of Computational Fluid Dynamics (CFD) and in particular Large Eddy Simulation (LES) codes to model fires provides an efficient tool for the prediction of large-scale effects that include plume characteristics, combustion product dispersion, and heat effects to adjacent objects. This paper illustrates the strengths of the Fire Dynamics Simulator (FDS), an LES code developed by the National Institute of Standards and Technology (NIST), through several small and large-scale validation runs and process safety applications. The paper presents two fire experiments--a small room fire and a large (15 m diameter) pool fire. The model results are compared to experimental data and demonstrate good agreement between the models and data. The validation work is then extended to demonstrate applicability to process safety concerns by detailing a model of a tank farm fire and a model of the ignition of a gaseous fuel in a confined space. In this simulation, a room was filled with propane, given time to disperse, and was then ignited. The model yields accurate results of the dispersion of the gas throughout the space. This information can be used to determine flammability and explosive limits in a space and can be used in subsequent models to determine the pressure and temperature waves that would result from an explosion. The model dispersion results were compared to an experiment performed by Factory Mutual. Using the above examples, this paper will demonstrate that FDS is ideally suited to build realistic models of process geometries in which large scale explosion and fire failure risks can be evaluated with several distinct advantages over more traditional CFD codes. Namely transient solutions to fire and explosion growth can be produced with less sophisticated hardware (lower cost) than needed for traditional CFD codes (PC type computer verses UNIX workstation) and can be solved for longer time histories (on the order of hundreds of seconds of computed time) with

  8. Mathematical Model of Porous Medium Dynamics

    NASA Astrophysics Data System (ADS)

    Gerschuk, Peotr; Sapozhnikov, Anatoly

    1999-06-01

    Semiempirical model describing porous material strains under pulse mechanical and thermal loadings is proposed. Porous medium is considered as continuous one but with special form of pressure dependence upon strain. This model takes into account principal features of porous materials behavior which can be observed when the material is strained in dynamic and static experiments ( non-reversibility of large strains, nonconvexity of loading curve). Elastoplastic properties of porous medium, its damages when it is strained and dynamic fracture are also taken into account. Dispersion of unidirectional motion caused by medium heterogeneity (porousness) is taken into acount by introducing the physical viscosity depending upon pores size. It is supposed that at every moment of time pores are in equilibrium with pressure i.e. kinetic of pores collapse is not taken into account. The model is presented by the system of differential equations connecting pressure and energy of porous medium with its strain. These equations close system of equations of motion and continuity which then is integrated numerically. The proposed model has been tested on carbon materials and porous copper . Results of calculation of these materials shock compressing are in satisfactory agreement with experimental data. Results of calculation of thin plate with porous copper layer collision are given as an illustration.

  9. Multiscale model approach for magnetization dynamics simulations

    NASA Astrophysics Data System (ADS)

    De Lucia, Andrea; Krüger, Benjamin; Tretiakov, Oleg A.; Kläui, Mathias

    2016-11-01

    Simulations of magnetization dynamics in a multiscale environment enable the rapid evaluation of the Landau-Lifshitz-Gilbert equation in a mesoscopic sample with nanoscopic accuracy in areas where such accuracy is required. We have developed a multiscale magnetization dynamics simulation approach that can be applied to large systems with spin structures that vary locally on small length scales. To implement this, the conventional micromagnetic simulation framework has been expanded to include a multiscale solving routine. The software selectively simulates different regions of a ferromagnetic sample according to the spin structures located within in order to employ a suitable discretization and use either a micromagnetic or an atomistic model. To demonstrate the validity of the multiscale approach, we simulate the spin wave transmission across the regions simulated with the two different models and different discretizations. We find that the interface between the regions is fully transparent for spin waves with frequency lower than a certain threshold set by the coarse scale micromagnetic model with no noticeable attenuation due to the interface between the models. As a comparison to exact analytical theory, we show that in a system with a Dzyaloshinskii-Moriya interaction leading to spin spirals, the simulated multiscale result is in good quantitative agreement with the analytical calculation.

  10. A dynamical model of tumour immunotherapy.

    PubMed

    Frascoli, Federico; Kim, Peter S; Hughes, Barry D; Landman, Kerry A

    2014-07-01

    A coupled ordinary differential equation model of tumour-immune dynamics is presented and analysed. The model accounts for biological and clinical factors which regulate the interaction rates of cytotoxic T lymphocytes on the surface of the tumour mass. A phase plane analysis demonstrates that competition between tumour cells and lymphocytes can result in tumour eradication, perpetual oscillations, or unbounded solutions. To investigate the dependence of the dynamic behaviour on model parameters, the equations are solved analytically and conditions for unbounded versus bounded solutions are discussed. An analytic characterisation of the basin of attraction for oscillatory orbits is given. It is also shown that the tumour shape, characterised by a surface area to volume scaling factor, influences the size of the basin, with significant consequences for therapy design. The findings reveal that the tumour volume must surpass a threshold size that depends on lymphocyte parameters for the cancer to be completely eliminated. A semi-analytic procedure to calculate oscillation periods and determine their sensitivity to model parameters is also presented. Numerical results show that the period of oscillations exhibits notable nonlinear dependence on biologically relevant conditions.

  11. OFFl Models: Novel Schema for Dynamical Modeling of Biological Systems

    PubMed Central

    2016-01-01

    Flow diagrams are a common tool used to help build and interpret models of dynamical systems, often in biological contexts such as consumer-resource models and similar compartmental models. Typically, their usage is intuitive and informal. Here, we present a formalized version of flow diagrams as a kind of weighted directed graph which follow a strict grammar, which translate into a system of ordinary differential equations (ODEs) by a single unambiguous rule, and which have an equivalent representation as a relational database. (We abbreviate this schema of “ODEs and formalized flow diagrams” as OFFL.) Drawing a diagram within this strict grammar encourages a mental discipline on the part of the modeler in which all dynamical processes of a system are thought of as interactions between dynamical species that draw parcels from one or more source species and deposit them into target species according to a set of transformation rules. From these rules, the net rate of change for each species can be derived. The modeling schema can therefore be understood as both an epistemic and practical heuristic for modeling, serving both as an organizational framework for the model building process and as a mechanism for deriving ODEs. All steps of the schema beyond the initial scientific (intuitive, creative) abstraction of natural observations into model variables are algorithmic and easily carried out by a computer, thus enabling the future development of a dedicated software implementation. Such tools would empower the modeler to consider significantly more complex models than practical limitations might have otherwise proscribed, since the modeling framework itself manages that complexity on the modeler’s behalf. In this report, we describe the chief motivations for OFFL, carefully outline its implementation, and utilize a range of classic examples from ecology and epidemiology to showcase its features. PMID:27270918

  12. A dynamic network model for interbank market

    NASA Astrophysics Data System (ADS)

    Xu, Tao; He, Jianmin; Li, Shouwei

    2016-12-01

    In this paper, a dynamic network model based on agent behavior is introduced to explain the formation mechanism of interbank market network. We investigate the impact of credit lending preference on interbank market network topology, the evolution of interbank market network and stability of interbank market. Experimental results demonstrate that interbank market network is a small-world network and cumulative degree follows the power-law distribution. We find that the interbank network structure keeps dynamic stability in the network evolution process. With the increase of bank credit lending preference, network clustering coefficient increases and average shortest path length decreases monotonously, which improves the stability of the network structure. External shocks are main threats for the interbank market and the reduction of bank external investment yield rate and deposits fluctuations contribute to improve the resilience of the banking system.

  13. Modeling of tower relief dynamics: Part 1

    SciTech Connect

    Cassata, J.R.; Dasgupta, S.; Gandhi, S.L. )

    1993-10-01

    In an environmentally responsible, safe and health-conscious design, a relief system must contain all relieving gases or vapors. The system must include treatment of these gases or vapors in a flare, scrubber or other appropriate device prior to discharge to the atmosphere. The benefit of a dynamic simulation is most significant in designing these systems. Dynamic modeling provides accurate answers to key questions which must be addressed. It identifies the design-setting relief scenario for any possible upset such as loss of reflux, power failure, loss of cooling water, fire, etc. It accurately quantifies the maximum relief rate and time dependency of the relief rates. This permits a safe relief system design that is not overly conservative.

  14. Stochastic dynamic models and Chebyshev splines

    PubMed Central

    Fan, Ruzong; Zhu, Bin; Wang, Yuedong

    2015-01-01

    In this article, we establish a connection between a stochastic dynamic model (SDM) driven by a linear stochastic differential equation (SDE) and a Chebyshev spline, which enables researchers to borrow strength across fields both theoretically and numerically. We construct a differential operator for the penalty function and develop a reproducing kernel Hilbert space (RKHS) induced by the SDM and the Chebyshev spline. The general form of the linear SDE allows us to extend the well-known connection between an integrated Brownian motion and a polynomial spline to a connection between more complex diffusion processes and Chebyshev splines. One interesting special case is connection between an integrated Ornstein–Uhlenbeck process and an exponential spline. We use two real data sets to illustrate the integrated Ornstein–Uhlenbeck process model and exponential spline model and show their estimates are almost identical. PMID:26045632

  15. Flight Dynamic Model Exchange using XML

    NASA Technical Reports Server (NTRS)

    Jackson, E. Bruce; Hildreth, Bruce L.

    2002-01-01

    The AIAA Modeling and Simulation Technical Committee has worked for several years to develop a standard by which the information needed to develop physics-based models of aircraft can be specified. The purpose of this standard is to provide a well-defined set of information, definitions, data tables and axis systems so that cooperating organizations can transfer a model from one simulation facility to another with maximum efficiency. This paper proposes using an application of the eXtensible Markup Language (XML) to implement the AIAA simulation standard. The motivation and justification for using a standard such as XML is discussed. Necessary data elements to be supported are outlined. An example of an aerodynamic model as an XML file is given. This example includes definition of independent and dependent variables for function tables, definition of key variables used to define the model, and axis systems used. The final steps necessary for implementation of the standard are presented. Software to take an XML-defined model and import/export it to/from a given simulation facility is discussed, but not demonstrated. That would be the next step in final implementation of standards for physics-based aircraft dynamic models.

  16. Models for inference in dynamic metacommunity systems

    USGS Publications Warehouse

    Dorazio, R.M.; Kery, M.; Royle, J. Andrew; Plattner, M.

    2010-01-01

    A variety of processes are thought to be involved in the formation and dynamics of species assemblages. For example, various metacommunity theories are based on differences in the relative contributions of dispersal of species among local communities and interactions of species within local communities. Interestingly, metacommunity theories continue to be advanced without much empirical validation. Part of the problem is that statistical models used to analyze typical survey data either fail to specify ecological processes with sufficient complexity or they fail to account for errors in detection of species during sampling. In this paper, we describe a statistical modeling framework for the analysis of metacommunity dynamics that is based on the idea of adopting a unified approach, multispecies occupancy modeling, for computing inferences about individual species, local communities of species, or the entire metacommunity of species. This approach accounts for errors in detection of species during sampling and also allows different metacommunity paradigms to be specified in terms of species-and location-specific probabilities of occurrence, extinction, and colonization: all of which are estimable. In addition, this approach can be used to address inference problems that arise in conservation ecology, such as predicting temporal and spatial changes in biodiversity for use in making conservation decisions. To illustrate, we estimate changes in species composition associated with the species-specific phenologies of flight patterns of butterflies in Switzerland for the purpose of estimating regional differences in biodiversity. ?? 2010 by the Ecological Society of America.

  17. Models for inference in dynamic metacommunity systems

    USGS Publications Warehouse

    Dorazio, Robert M.; Kery, Marc; Royle, J. Andrew; Plattner, Matthias

    2010-01-01

    A variety of processes are thought to be involved in the formation and dynamics of species assemblages. For example, various metacommunity theories are based on differences in the relative contributions of dispersal of species among local communities and interactions of species within local communities. Interestingly, metacommunity theories continue to be advanced without much empirical validation. Part of the problem is that statistical models used to analyze typical survey data either fail to specify ecological processes with sufficient complexity or they fail to account for errors in detection of species during sampling. In this paper, we describe a statistical modeling framework for the analysis of metacommunity dynamics that is based on the idea of adopting a unified approach, multispecies occupancy modeling, for computing inferences about individual species, local communities of species, or the entire metacommunity of species. This approach accounts for errors in detection of species during sampling and also allows different metacommunity paradigms to be specified in terms of species- and location-specific probabilities of occurrence, extinction, and colonization: all of which are estimable. In addition, this approach can be used to address inference problems that arise in conservation ecology, such as predicting temporal and spatial changes in biodiversity for use in making conservation decisions. To illustrate, we estimate changes in species composition associated with the species-specific phenologies of flight patterns of butterflies in Switzerland for the purpose of estimating regional differences in biodiversity.

  18. Dynamical model for light composite fermions

    NASA Astrophysics Data System (ADS)

    Derman, Emanuel

    1981-04-01

    A simple dynamical model for the internal structure of the three light lepton and quark generations (νe,e,u,d), (νμ,μ,c,s), and (ντ,τ,t,b) is proposed. Each generation is constructed of only one fundamental massive generation F=(L∘,L-,U,D) with the same (SU3)c×SU2×U1 quantum numbers as the light generations, bound to a core of one or more massive Higgs bosons H, where H is the single physical Higgs boson necessary for spontaneous symmetry breaking in the standard model. For example, e-=[L-H], μ-=[L-HH], τ-=[L-HHH]. It is shown that the known binding force due to H exchange is attractive and strong enough to produce light bound states. Dynamical calculations for the bound-state composite fermions using the Bethe-Salpeter equation, together with some phenomenological imput, suggest MH~16 TeV and MF~100 GeV. It is likely that such bound states can have properties compatible with the up to now apparently elementary appearance of known fermions, for example, their Dirac magnetic moments and absence of intergeneration radiative decays (such as μ-->eδ). Phenomenological consequences and tests of the model are discussed.

  19. Dynamical model for light composite fermions

    SciTech Connect

    Derman, E.

    1981-04-01

    A simple dynamical model for the internal structure of the three light lepton and quark generations (..nu../sub e/,e,u,d), (..nu../sub ..mu../,..mu..,c,s), and (..nu../sub tau/,tau,t,b) is proposed. Each generation is constructed of only one fundamental massive generation F=(L-italic/sup 0/,L/sup -/,U,D) with the same (SU/sub 3/)/sub c/ x SU/sub 2/ x U/sub 1/ quantum numbers as the light generations, bound to a core of one or more massive Higgs bosons H, where H is the single physical Higgs boson necessary for spontaneous symmetry breaking in the standard model. For example, e/sup -/=L/sup -/H), ..mu../sup -/=L/sup -/HH), tau/sup -/=L/sup -/HHH). It is shown that the known binding force due to H exchange is attractive and strong enough to produce light bound states. Dynamical calculations for the bound-state composite fermions using the Bethe-Salpeter equation, together with some phenomenological imput, suggest M/sub H/approx.16 TeV and M/sub F/approx.100 GeV. It is likely that such bound states can have properties compatible with the up to now apparently elementary appearance of known fermions, for example, their Dirac magnetic moments and absence of intergeneration radiative decays (such as ..mu -->..e..gamma..). Phenomenological consequences and tests of the model are discussed.

  20. Modeling cell dynamics under mobile phone radiation.

    PubMed

    Minelli, Tullio Antonio; Balduzzo, Maurizio; Milone, Francesco Ferro; Nofrate, Valentina

    2007-04-01

    Perturbations by pulse-modulated microwave radiation from GSM mobile phones on neuron cell membrane gating and calcium oscillations have been suggested as a possible mechanism underlying activation of brain states and electroencephalographic epiphenomena. As the employ of UMTS phones seems to reveal other symptoms, a unified phenomenological framework is needed. In order to explain possible effects of mobile phone radiation on cell oscillations, GSM and UMTS low-frequency envelopes have been detected, recorded and used as input in cell models. Dynamical systems endowed with contiguous regular and chaotic regimes suitable to produce stochastic resonance can both account for the perturbation of the neuro-electrical activity and even for the low intensity of the signal perceived by high sensitive subjects. Neuron models of this kind can be employed as a reductionist hint for the mentioned phenomenology. The Hindmarsh-Rose model exhibits frequency enhancement and regularization phenomena induced by weak GSM and UMTS. More realistic simulations of cell membrane gating and calcium oscillations have been performed with the help of an adaptation of the Chay-Keizer dynamical system. This scheme can explain the suspected subjective sensitivity to mobile phone signals under the thermal threshold, in terms of cell calcium regularity mechanisms. Concerning the two kinds of emission, the stronger occupation of the ELF band of last generation UMTS phones is compensated by lower power emitted.

  1. Mathematical modeling of infectious disease dynamics

    PubMed Central

    Siettos, Constantinos I.; Russo, Lucia

    2013-01-01

    Over the last years, an intensive worldwide effort is speeding up the developments in the establishment of a global surveillance network for combating pandemics of emergent and re-emergent infectious diseases. Scientists from different fields extending from medicine and molecular biology to computer science and applied mathematics have teamed up for rapid assessment of potentially urgent situations. Toward this aim mathematical modeling plays an important role in efforts that focus on predicting, assessing, and controlling potential outbreaks. To better understand and model the contagious dynamics the impact of numerous variables ranging from the micro host–pathogen level to host-to-host interactions, as well as prevailing ecological, social, economic, and demographic factors across the globe have to be analyzed and thoroughly studied. Here, we present and discuss the main approaches that are used for the surveillance and modeling of infectious disease dynamics. We present the basic concepts underpinning their implementation and practice and for each category we give an annotated list of representative works. PMID:23552814

  2. Oxygen and seizure dynamics: II. Computational modeling

    PubMed Central

    Wei, Yina; Ullah, Ghanim; Ingram, Justin

    2014-01-01

    Electrophysiological recordings show intense neuronal firing during epileptic seizures leading to enhanced energy consumption. However, the relationship between oxygen metabolism and seizure patterns has not been well studied. Recent studies have developed fast and quantitative techniques to measure oxygen microdomain concentration during seizure events. In this article, we develop a biophysical model that accounts for these experimental observations. The model is an extension of the Hodgkin-Huxley formalism and includes the neuronal microenvironment dynamics of sodium, potassium, and oxygen concentrations. Our model accounts for metabolic energy consumption during and following seizure events. We can further account for the experimental observation that hypoxia can induce seizures, with seizures occurring only within a narrow range of tissue oxygen pressure. We also reproduce the interplay between excitatory and inhibitory neurons seen in experiments, accounting for the different oxygen levels observed during seizures in excitatory vs. inhibitory cell layers. Our findings offer a more comprehensive understanding of the complex interrelationship among seizures, ion dynamics, and energy metabolism. PMID:24671540

  3. Aerodynamics modeling of towed-cable dynamics

    SciTech Connect

    Kang, S.W.; Latorre, V.R.

    1991-01-17

    The dynamics of a cable/drogue system being towed by an orbiting aircraft has been investigated as a part of an LTWA project for the Naval Air Systems Command. We present here a status report on the tasks performed under Phase 1. We have accomplished the following tasks under Phase 1: A literature survey on the towed-cable motion problem has been conducted. While both static (steady-state) and dynamic (transient) analyses exist in the literature, no single, comprehensive analysis exists that directly addresses the present problem. However, the survey also reveals that, when judiciously applied, these past analyses can serve as useful building blocks for approaching the present problem. A numerical model that addresses several aspects of the towed-cable dynamic problem has been adapted from a Canadian underwater code for the present aerodynamic situation. This modified code, called TOWDYN, analyzes the effects of gravity, tension, aerodynamic drag, and wind. Preliminary results from this code demonstrate that the wind effects alone CAN generate the drogue oscillation behavior, i.e., the yo-yo'' phenomenon. This code also will serve as a benchmark code for checking the accuracy of a more general and complete R D'' model code. We have initiated efforts to develop a general R D model supercomputer code that also takes into account other physical factors, such as induced oscillations and bending stiffness. This general code will be able to evaluate the relative impacts of the various physical parameters, which may become important under certain conditions. This R D code will also enable development of a simpler operational code that can be used by the Naval Air personnel in the field.

  4. Computational fluid dynamics modelling in cardiovascular medicine

    PubMed Central

    Morris, Paul D; Narracott, Andrew; von Tengg-Kobligk, Hendrik; Silva Soto, Daniel Alejandro; Hsiao, Sarah; Lungu, Angela; Evans, Paul; Bressloff, Neil W; Lawford, Patricia V; Hose, D Rodney; Gunn, Julian P

    2016-01-01

    This paper reviews the methods, benefits and challenges associated with the adoption and translation of computational fluid dynamics (CFD) modelling within cardiovascular medicine. CFD, a specialist area of mathematics and a branch of fluid mechanics, is used routinely in a diverse range of safety-critical engineering systems, which increasingly is being applied to the cardiovascular system. By facilitating rapid, economical, low-risk prototyping, CFD modelling has already revolutionised research and development of devices such as stents, valve prostheses, and ventricular assist devices. Combined with cardiovascular imaging, CFD simulation enables detailed characterisation of complex physiological pressure and flow fields and the computation of metrics which cannot be directly measured, for example, wall shear stress. CFD models are now being translated into clinical tools for physicians to use across the spectrum of coronary, valvular, congenital, myocardial and peripheral vascular diseases. CFD modelling is apposite for minimally-invasive patient assessment. Patient-specific (incorporating data unique to the individual) and multi-scale (combining models of different length- and time-scales) modelling enables individualised risk prediction and virtual treatment planning. This represents a significant departure from traditional dependence upon registry-based, population-averaged data. Model integration is progressively moving towards ‘digital patient’ or ‘virtual physiological human’ representations. When combined with population-scale numerical models, these models have the potential to reduce the cost, time and risk associated with clinical trials. The adoption of CFD modelling signals a new era in cardiovascular medicine. While potentially highly beneficial, a number of academic and commercial groups are addressing the associated methodological, regulatory, education- and service-related challenges. PMID:26512019

  5. Computational fluid dynamics modelling in cardiovascular medicine.

    PubMed

    Morris, Paul D; Narracott, Andrew; von Tengg-Kobligk, Hendrik; Silva Soto, Daniel Alejandro; Hsiao, Sarah; Lungu, Angela; Evans, Paul; Bressloff, Neil W; Lawford, Patricia V; Hose, D Rodney; Gunn, Julian P

    2016-01-01

    This paper reviews the methods, benefits and challenges associated with the adoption and translation of computational fluid dynamics (CFD) modelling within cardiovascular medicine. CFD, a specialist area of mathematics and a branch of fluid mechanics, is used routinely in a diverse range of safety-critical engineering systems, which increasingly is being applied to the cardiovascular system. By facilitating rapid, economical, low-risk prototyping, CFD modelling has already revolutionised research and development of devices such as stents, valve prostheses, and ventricular assist devices. Combined with cardiovascular imaging, CFD simulation enables detailed characterisation of complex physiological pressure and flow fields and the computation of metrics which cannot be directly measured, for example, wall shear stress. CFD models are now being translated into clinical tools for physicians to use across the spectrum of coronary, valvular, congenital, myocardial and peripheral vascular diseases. CFD modelling is apposite for minimally-invasive patient assessment. Patient-specific (incorporating data unique to the individual) and multi-scale (combining models of different length- and time-scales) modelling enables individualised risk prediction and virtual treatment planning. This represents a significant departure from traditional dependence upon registry-based, population-averaged data. Model integration is progressively moving towards 'digital patient' or 'virtual physiological human' representations. When combined with population-scale numerical models, these models have the potential to reduce the cost, time and risk associated with clinical trials. The adoption of CFD modelling signals a new era in cardiovascular medicine. While potentially highly beneficial, a number of academic and commercial groups are addressing the associated methodological, regulatory, education- and service-related challenges.

  6. Development of Improved Dynamic Failure Models.

    DTIC Science & Technology

    1985-02-15

    M 1.35 g/cm3 ) was used to produce a Chapman - Jouguet pressure of 16.3 GPa. The cylinder was surrounded by a PMHA tube of 1.15 cm thickness and a steel...3 mproved computational models were developed for dynamic material failure by Shear banding and ductile fracture. The research effort involved theory ...Cylinder at 56 ps After Detonation ..................... VI-41 ý,r I.4 I.P VI.2 Fragment (a) of 4340 Steel Cylinder (RC 40) and Photomicrographs (b and c) of

  7. Modeling the dynamical systems on experimental data

    SciTech Connect

    Janson, N.B.; Anishchenko, V.S.

    1996-06-01

    An attempt is made in the work to create qualitative models of some real biological systems, i.e., isolated frog{close_quote}s heart, a human{close_quote}s heart and a blood circulation system of a white rat. Sampled one-dimensional realizations of these systems were taken as the initial data. Correlation dimensions were calculated to evaluate the embedding dimensions of the systems{close_quote} attractors. The result of the work are the systems of ordinary differential equations which approximately describe the dynamics of the systems under investigation. {copyright} {ital 1996 American Institute of Physics.}

  8. Dynamic model of the threshold displacement energy

    NASA Astrophysics Data System (ADS)

    Kupchishin, A. I.; Kupchishin, A. A.

    2017-01-01

    A dynamic (cascade-probability) model for calculating the threshold displacement energy of knocked-out atoms (Ed) was proposed taking into account the influence of the instability zone (spontaneous recombination). General expression was recorded for Ed depending on the formation energy of interstitial atoms Ef and vacancies Ei, on the energy transfer coefficient α and the number of interactions i needed to move the atom out of the instability zone. The parameters of primary particles were calculated. Comparison of calculations with experimental data gives a satisfactory agreement.

  9. Improved dynamical modelling of the Arches cluster

    NASA Astrophysics Data System (ADS)

    Lee, Joowon; Kim, Sungsoo S.

    2014-05-01

    Recently, Clarkson et al. (2012) measured the intrinsic velocity dispersion of the Arches cluster, a young and massive star cluster in the Galactic center. Using the observed velocity dispersion profile and the surface brightness profile of Espinoza et al. (2009), they estimate the cluster's present-day mass to be ˜ 1.5×104 M⊙ by fitting an isothermal King model. In this study, we trace the best-fit initial mass for the Arches cluster using the same observed data set and also the anisotropic Fokker-Planck calculations for the dynamical evolution.

  10. Scalar model for frictional precursors dynamics

    PubMed Central

    Taloni, Alessandro; Benassi, Andrea; Sandfeld, Stefan; Zapperi, Stefano

    2015-01-01

    Recent experiments indicate that frictional sliding occurs by nucleation of detachment fronts at the contact interface that may appear well before the onset of global sliding. This intriguing precursory activity is not accounted for by traditional friction theories but is extremely important for friction dominated geophysical phenomena as earthquakes, landslides or avalanches. Here we simulate the onset of slip of a three dimensional elastic body resting on a surface and show that experimentally observed frictional precursors depend in a complex non-universal way on the sample geometry and loading conditions. Our model satisfies Archard's law and Amontons' first and second laws, reproducing with remarkable precision the real contact area dynamics, the precursors' envelope dynamics prior to sliding, and the normal and shear internal stress distributions close to the interfacial surface. Moreover, it allows to assess which features can be attributed to the elastic equilibrium, and which are attributed to the out-of-equilibrium dynamics, suggesting that precursory activity is an intrinsically quasi-static physical process. A direct calculation of the evolution of the Coulomb stress before and during precursors nucleation shows large variations across the sample, explaining why earthquake forecasting methods based only on accumulated slip and Coulomb stress monitoring are often ineffective. PMID:25640079

  11. Scalar model for frictional precursors dynamics.

    PubMed

    Taloni, Alessandro; Benassi, Andrea; Sandfeld, Stefan; Zapperi, Stefano

    2015-02-02

    Recent experiments indicate that frictional sliding occurs by nucleation of detachment fronts at the contact interface that may appear well before the onset of global sliding. This intriguing precursory activity is not accounted for by traditional friction theories but is extremely important for friction dominated geophysical phenomena as earthquakes, landslides or avalanches. Here we simulate the onset of slip of a three dimensional elastic body resting on a surface and show that experimentally observed frictional precursors depend in a complex non-universal way on the sample geometry and loading conditions. Our model satisfies Archard's law and Amontons' first and second laws, reproducing with remarkable precision the real contact area dynamics, the precursors' envelope dynamics prior to sliding, and the normal and shear internal stress distributions close to the interfacial surface. Moreover, it allows to assess which features can be attributed to the elastic equilibrium, and which are attributed to the out-of-equilibrium dynamics, suggesting that precursory activity is an intrinsically quasi-static physical process. A direct calculation of the evolution of the Coulomb stress before and during precursors nucleation shows large variations across the sample, explaining why earthquake forecasting methods based only on accumulated slip and Coulomb stress monitoring are often ineffective.

  12. AFDM: An Advanced Fluid-Dynamics Model

    SciTech Connect

    Wilhelm, D.

    1990-09-01

    This volume describes the Advanced Fluid-Dynamics Model (AFDM) for topologies, flow regimes, and interfacial areas. The objective of these models is to provide values for the interfacial areas between all components existing in a computational cell. The interfacial areas are then used to evaluate the mass, energy, and momentum transfer between the components. A new approach has been undertaken in the development of a model to convect the interfacial areas of the discontinuous velocity fields in the three-velocity-field environment of AFDM. These interfacial areas are called convectible surface areas. The continuous and discontinuous components are chosen using volume fraction and levitation criteria. This establishes so-called topologies for which the convectible surface areas can be determined. These areas are functions of space and time. Solid particulates that are limited to being discontinuous within the bulk fluid are assumed to have a constant size. The convectible surface areas are subdivided to model contacts between two discontinuous components or discontinuous components and the structure. The models have been written for the flow inside of large pools. Therefore, the structure is tracked only as a boundary to the fluid volume without having a direct influence on velocity or volume fraction distribution by means of flow regimes or boundary layer models. 17 refs., 7 tabs., 18 figs.

  13. Computational social dynamic modeling of group recruitment.

    SciTech Connect

    Berry, Nina M.; Lee, Marinna; Pickett, Marc; Turnley, Jessica Glicken; Smrcka, Julianne D.; Ko, Teresa H.; Moy, Timothy David; Wu, Benjamin C.

    2004-01-01

    The Seldon software toolkit combines concepts from agent-based modeling and social science to create a computationally social dynamic model for group recruitment. The underlying recruitment model is based on a unique three-level hybrid agent-based architecture that contains simple agents (level one), abstract agents (level two), and cognitive agents (level three). This uniqueness of this architecture begins with abstract agents that permit the model to include social concepts (gang) or institutional concepts (school) into a typical software simulation environment. The future addition of cognitive agents to the recruitment model will provide a unique entity that does not exist in any agent-based modeling toolkits to date. We use social networks to provide an integrated mesh within and between the different levels. This Java based toolkit is used to analyze different social concepts based on initialization input from the user. The input alters a set of parameters used to influence the values associated with the simple agents, abstract agents, and the interactions (simple agent-simple agent or simple agent-abstract agent) between these entities. The results of phase-1 Seldon toolkit provide insight into how certain social concepts apply to different scenario development for inner city gang recruitment.

  14. Gradient navigation model for pedestrian dynamics

    NASA Astrophysics Data System (ADS)

    Dietrich, Felix; Köster, Gerta

    2014-06-01

    We present a microscopic ordinary differential equation (ODE)-based model for pedestrian dynamics: the gradient navigation model. The model uses a superposition of gradients of distance functions to directly change the direction of the velocity vector. The velocity is then integrated to obtain the location. The approach differs fundamentally from force-based models needing only three equations to derive the ODE system, as opposed to four in, e.g., the social force model. Also, as a result, pedestrians are no longer subject to inertia. Several other advantages ensue: Model-induced oscillations are avoided completely since no actual forces are present. The derivatives in the equations of motion are smooth and therefore allow the use of fast and accurate high-order numerical integrators. At the same time, the existence and uniqueness of the solution to the ODE system follow almost directly from the smoothness properties. In addition, we introduce a method to calibrate parameters by theoretical arguments based on empirically validated assumptions rather than by numerical tests. These parameters, combined with the accurate integration, yield simulation results with no collisions of pedestrians. Several empirically observed system phenomena emerge without the need to recalibrate the parameter set for each scenario: obstacle avoidance, lane formation, stop-and-go waves, and congestion at bottlenecks. The density evolution in the latter is shown to be quantitatively close to controlled experiments. Likewise, we observe a dependence of the crowd velocity on the local density that compares well with benchmark fundamental diagrams.

  15. A dynamic localization model with stochastic backscatter

    NASA Technical Reports Server (NTRS)

    Carati, Daniele; Ghosal, Sandip

    1994-01-01

    The modeling of subgrid scales in large-eddy simulation (LES) has been rationalized by the introduction of the dynamic localization procedure. This method allows one to compute rather than prescribe the unknown coefficients in the subgrid-scale model. Formally, the LES equations are supposed to be obtained by applying to the Navier-Stokes equations a 'grid filter' operation. Though the subgrid stress itself is unknown, an identity between subgrid stresses generated by different filters has been derived. Although preliminary tests of the Dynamic Localization Model (DLM) with k-equation have been satisfactory, the use of a negative eddy viscosity to describe backscatter is probably a crude representation of the physics of reverse transfer of energy. Indeed, the model is fully deterministic. Knowing the filtered velocity field and the subgrid-scale energy, the subgrid stress is automatically determined. We know that the LES equations cannot be fully deterministic since the small scales are not resolved. This stems from an important distinction between equilibrium hydrodynamics and turbulence. In equilibrium hydrodynamics, the molecular motions are also not resolved. However, there is a clear separation of scale between these unresolved motions and the relevant hydrodynamic scales. The result of molecular motions can then be separated into an average effect (the molecular viscosity) and some fluctuations. Due to the large number of molecules present in a box with size of the order of the hydrodynamic scale, the ratio between fluctuations and the average effect should be very small (as a result of the 'law of large numbers'). For that reason, the hydrodynamic balance equations are usually purely deterministic. In turbulence, however, there is no clear separation of scale between small and large eddies. In that case, the fluctuations around a deterministic eddy viscosity term could be significant. An eddy noise would then appear through a stochastic term in the subgrid

  16. Atomic-scale dynamics of a model glass-forming metallic liquid: Dynamical crossover, dynamical decoupling, and dynamical clustering

    SciTech Connect

    Jaiswal, Abhishek; Egami, Takeshi; Zhang, Yang

    2015-04-01

    The phase behavior of multi-component metallic liquids is exceedingly complex because of the convoluted many-body and many-elemental interactions. Herein, we present systematic studies of the dynamic aspects of such a model ternary metallic liquid Cu40Zr51Al9 using molecular dynamics simulation with embedded atom method. We observed a dynamical crossover from Arrhenius to super-Arrhenius behavior in the transport properties (diffusion coefficient, relaxation times, and shear viscosity) bordered at Tx ~1300K. Unlike in many molecular and macromolecular liquids, this crossover phenomenon occurs in the equilibrium liquid state well above the melting temperature of the system (Tm ~ 900K), and the crossover temperature is roughly twice of the glass-transition temperature (Tg). Below Tx, we found the elemental dynamics decoupled and the Stokes-Einstein relation broke down, indicating the onset of heterogeneous spatially correlated dynamics in the system mediated by dynamic communications among local configurational excitations. To directly characterize and visualize the correlated dynamics, we employed a non-parametric, unsupervised machine learning technique and identified dynamical clusters of atoms with similar atomic mobility. The revealed average dynamical cluster size shows an accelerated increase below Tx and mimics the trend observed in other ensemble averaged quantities that are commonly used to quantify the spatially heterogeneous dynamics such as the non-Gaussian parameter and the four-point correlation function.

  17. Constructing Dynamic Event Trees from Markov Models

    SciTech Connect

    Paolo Bucci; Jason Kirschenbaum; Tunc Aldemir; Curtis Smith; Ted Wood

    2006-05-01

    In the probabilistic risk assessment (PRA) of process plants, Markov models can be used to model accurately the complex dynamic interactions between plant physical process variables (e.g., temperature, pressure, etc.) and the instrumentation and control system that monitors and manages the process. One limitation of this approach that has prevented its use in nuclear power plant PRAs is the difficulty of integrating the results of a Markov analysis into an existing PRA. In this paper, we explore a new approach to the generation of failure scenarios and their compilation into dynamic event trees from a Markov model of the system. These event trees can be integrated into an existing PRA using software tools such as SAPHIRE. To implement our approach, we first construct a discrete-time Markov chain modeling the system of interest by: a) partitioning the process variable state space into magnitude intervals (cells), b) using analytical equations or a system simulator to determine the transition probabilities between the cells through the cell-to-cell mapping technique, and, c) using given failure/repair data for all the components of interest. The Markov transition matrix thus generated can be thought of as a process model describing the stochastic dynamic behavior of the finite-state system. We can therefore search the state space starting from a set of initial states to explore all possible paths to failure (scenarios) with associated probabilities. We can also construct event trees of arbitrary depth by tracing paths from a chosen initiating event and recording the following events while keeping track of the probabilities associated with each branch in the tree. As an example of our approach, we use the simple level control system often used as benchmark in the literature with one process variable (liquid level in a tank), and three control units: a drain unit and two supply units. Each unit includes a separate level sensor to observe the liquid level in the tank

  18. Modeling correlated human dynamics with temporal preference

    NASA Astrophysics Data System (ADS)

    Wang, Peng; Zhou, Tao; Han, Xiao-Pu; Wang, Bing-Hong

    2014-03-01

    We empirically study the activity pattern of individual blog-posting and observe the interevent time distributions decay as power-laws at both individual and population level. As different from previous studies, we find significant short-term memory in it. Moreover, the memory coefficient first decays in a power law and then turns to an exponential form. Our findings produce evidence for the strong short-term memory in human dynamics and challenge previous models. Accordingly, we propose a simple model based on temporal preference, which can well reproduce both the heavy-tailed nature and the strong memory effects. This work helps in understanding the temporal regularities of online human behaviors.

  19. Dynamic modelling of packaging material flow systems.

    PubMed

    Tsiliyannis, Christos A

    2005-04-01

    A dynamic model has been developed for reused and recycled packaging material flows. It allows a rigorous description of the flows and stocks during the transition to new targets imposed by legislation, product demand variations or even by variations in consumer discard behaviour. Given the annual reuse and recycle frequency and packaging lifetime, the model determines all packaging flows (e.g., consumption and reuse) and variables through which environmental policy is formulated, such as recycling, waste and reuse rates and it identifies the minimum number of variables to be surveyed for complete packaging flow monitoring. Simulation of the transition to the new flow conditions is given for flows of packaging materials in Greece, based on 1995--1998 field inventory and statistical data.

  20. Microscopic model for ultrafast remagnetization dynamics.

    PubMed

    Chimata, Raghuveer; Bergman, Anders; Bergqvist, Lars; Sanyal, Biplab; Eriksson, Olle

    2012-10-12

    In this Letter, we provide a microscopic model for the ultrafast remagnetization of atomic moments already quenched above the Stoner-Curie temperature by a strong laser fluence. Combining first-principles density functional theory, atomistic spin dynamics utilizing the Landau-Lifshitz-Gilbert equation, and a three-temperature model, we analyze the temporal evolution of atomic moments as well as the macroscopic magnetization of bcc Fe and hcp Co covering a broad time scale, ranging from femtoseconds to picoseconds. Our simulations show a variety of complex temporal behavior of the magnetic properties resulting from an interplay between electron, spin, and lattice subsystems, which causes an intricate time evolution of the atomic moment, where longitudinal and transversal fluctuations result in a macrospin moment that evolves highly nonmonotonically.

  1. Macroscopic model for solvated ion dynamics

    NASA Astrophysics Data System (ADS)

    Chen, J.-H.; Adelman, S. A.

    1980-02-01

    A macroscopic treatment of solvated ion dynamics is developed and applied to calculate the limiting (zero concentration) conductance of cations in several aprotic solvents. The theory is based on a coupled set of electrostatic and hydrodynamic equations for the density, flow, and polarization fields induced in the polar solvent by a moving ion. These equations, which are derived by the Mori projection technique, include crucial local solvent structure (ion solvation) effects through solvent compressibility, and local constitutive parameters. If solvent structure is suppressed, the equations reduce to those derived previously by Onsager and Hubbard [J. B. Hubbard and L. Onsager, J. Chem. Phys. 67, 4850 (1977)]. The macroscopic equations are approximately decoupled into electrostatic and hydrodynamic parts. The decoupled equations are solved assuming a step density, viscosity, and dielectric constant model for the local solvent structure and dynamics. This yields analytic expressions for the viscous, ζV, and dielectric ζD, contributions to the ion friction coefficient. These expressions generalize, respectively, the Stokes and Zwanzig results for the (slip) viscous and dielectric friction so as to account for ion solvation effects. The friction coefficients involve a desolvation function Δ which depends on the local structure (density) and dynamics of the solvent. The drag coefficient results reduce in form to those of Zwanzig (within a flow gradient correction factor of 2/3) and Stokes for both weak (Δ→1) and strong (Δ→0) ion-solvent interaction. For Δ→1 the true ionic radius Ri appears in the drag formulas while for Δ→0 a renormalized solvated ion radius σ=Ri+2Rs (where Rs=solvent molecule radius) appears. The theory is fit to experimental cation conductances in pyridine, acetone, and acetonitrile by representing Δ by a two parameter switching function. Agreement between the model and experiment is satisfactory for all three solvents. Moreover

  2. Radiative and dynamical modeling of Jupiter's atmosphere

    NASA Astrophysics Data System (ADS)

    Guerlet, Sandrine; Spiga, Aymeric

    2016-04-01

    Jupiter's atmosphere harbours a rich meteorology, with alternate westward and eastward zonal jets, waves signatures and long-living storms. Recent ground-based and spacecraft measurements have also revealed a rich stratospheric dynamics, with the observation of thermal signatures of planetary waves, puzzling meridional distribution of hydrocarbons at odds with predictions of photochemical models, and a periodic equatorial oscillation analogous to the Earth's quasi-biennal oscillation and Saturn's equatorial oscillation. These recent observations, along with the many unanswered questions (What drives and maintain the equatorial oscillations? How important is the seasonal forcing compared to the influence of internal heat? What is the large-scale stratospheric circulation of these giant planets?) motivated us to develop a complete 3D General Circulation Model (GCM) of Saturn and Jupiter. We aim at exploring the large-scale circulation, seasonal variability, and wave activity from the troposphere to the stratosphere of these giant planets. We will briefly present how we adapted our existing Saturn GCM to Jupiter. One of the main change is the addition of a stratospheric haze layer made of fractal aggregates in the auroral regions (poleward of 45S and 30N). This haze layer has a significant radiative impact by modifying the temperature up to +/- 15K in the middle stratosphere. We will then describe the results of radiative-convective simulations and how they compare to recent Cassini and ground-based temperature measurements. These simulations reproduce surprisingly well some of the observed thermal vertical and meridional gradients, but several important mismatches at low and high latitudes suggest that dynamics also plays an important role in shaping the temperature field. Finally, we will present full GCM simulations and discuss the main resulting features (waves and instabilities). We will also and discuss the impact of the choice of spatial resolution and

  3. A Simple General Model of Evolutionary Dynamics

    NASA Astrophysics Data System (ADS)

    Thurner, Stefan

    Evolution is a process in which some variations that emerge within a population (of, e.g., biological species or industrial goods) get selected, survive, and proliferate, whereas others vanish. Survival probability, proliferation, or production rates are associated with the "fitness" of a particular variation. We argue that the notion of fitness is an a posteriori concept in the sense that one can assign higher fitness to species or goods that survive but one can generally not derive or predict fitness per se. Whereas proliferation rates can be measured, fitness landscapes, that is, the inter-dependence of proliferation rates, cannot. For this reason we think that in a physical theory of evolution such notions should be avoided. Here we review a recent quantitative formulation of evolutionary dynamics that provides a framework for the co-evolution of species and their fitness landscapes (Thurner et al., 2010, Physica A 389, 747; Thurner et al., 2010, New J. Phys. 12, 075029; Klimek et al., 2009, Phys. Rev. E 82, 011901 (2010). The corresponding model leads to a generic evolutionary dynamics characterized by phases of relative stability in terms of diversity, followed by phases of massive restructuring. These dynamical modes can be interpreted as punctuated equilibria in biology, or Schumpeterian business cycles (Schumpeter, 1939, Business Cycles, McGraw-Hill, London) in economics. We show that phase transitions that separate phases of high and low diversity can be approximated surprisingly well by mean-field methods. We demonstrate that the mathematical framework is suited to understand systemic properties of evolutionary systems, such as their proneness to collapse, or their potential for diversification. The framework suggests that evolutionary processes are naturally linked to self-organized criticality and to properties of production matrices, such as their eigenvalue spectra. Even though the model is phrased in general terms it is also practical in the sense

  4. Modeling quantum fluid dynamics at nonzero temperatures

    PubMed Central

    Berloff, Natalia G.; Brachet, Marc; Proukakis, Nick P.

    2014-01-01

    The detailed understanding of the intricate dynamics of quantum fluids, in particular in the rapidly growing subfield of quantum turbulence which elucidates the evolution of a vortex tangle in a superfluid, requires an in-depth understanding of the role of finite temperature in such systems. The Landau two-fluid model is the most successful hydrodynamical theory of superfluid helium, but by the nature of the scale separations it cannot give an adequate description of the processes involving vortex dynamics and interactions. In our contribution we introduce a framework based on a nonlinear classical-field equation that is mathematically identical to the Landau model and provides a mechanism for severing and coalescence of vortex lines, so that the questions related to the behavior of quantized vortices can be addressed self-consistently. The correct equation of state as well as nonlocality of interactions that leads to the existence of the roton minimum can also be introduced in such description. We review and apply the ideas developed for finite-temperature description of weakly interacting Bose gases as possible extensions and numerical refinements of the proposed method. We apply this method to elucidate the behavior of the vortices during expansion and contraction following the change in applied pressure. We show that at low temperatures, during the contraction of the vortex core as the negative pressure grows back to positive values, the vortex line density grows through a mechanism of vortex multiplication. This mechanism is suppressed at high temperatures. PMID:24704874

  5. Dynamic Elasticity Model of Resilin Biopolymers

    NASA Astrophysics Data System (ADS)

    Hu, Xiao; Duki, Solomon

    2013-03-01

    Resilin proteins are `super elastic rubbers' in the flight and jumping systems of most insects, and can extend and retract millions of times. Natural resilin exhibits high resilience (> 95%) under high-frequency conditions, and could be stretched to over 300% of its original length with a low elastic modulus of 0.1-3 MPa. However, insight into the underlying molecular mechanisms responsible for resilin elasticity remains undefined. We report on the dynamic structure transitions and functions of full length resilin from fruit fly (D. melanogaster CG15920) and its different functional domains. A dynamic computational model is proposed to explain the super elasticity and energy conversion mechanisms of resilin, providing important insight into structure-function relationships for resilins, as well as other elastomeric proteins. A strong beta-turn transition was experimentally identified in the full length resilin and its non-elastic domains (Exon III). Changes in periodic long-range order were demonstrated during this transition, induced either by thermal or mechanical inputs, to confirm the universality of proposed mechanism. Further, this model offers new options for designing protein-based biopolymers with tunable material applications.

  6. Dynamic models of lateritic bauxite formation

    NASA Astrophysics Data System (ADS)

    Zhukov, V. V.; Bogatyrev, B. A.

    2012-09-01

    2D dynamic models of bauxite formation in the weathering mantle covering denudation areas drained by river systems are discussed. The role of relief-forming factors (tectonic uplift, river erosion and denudation of drainage divides), the interrelation of hydrogeological and lithologic structure of the bauxitebearing weathering mantle, and the dynamics of zoning formation above and below groundwater level are described in the models. Creative and destructive epochs of lateritic bauxite formation differing in tectonic regime are distinguished. During the creative epochs, lateritic weathering develops against a background of decreasing denudation and an increase in areas of bauxite formation. The destructive epochs are characterized by intense denudation, cutting down the areas of lateritic bauxite formation and eventually leading to the complete removal of the weathering mantle. Different morphogenetic types and varieties of bauxite-bearing weathering mantles develop during creative and destructive epochs. The morphology of the weathering mantle sections at the deposits of Cenozoic lateritic bauxite in the present-day tropical zone of the Earth corresponds to the destructive epoch, which is characterized by declining areas of lateritic bauxite formation and will end with complete denudation of lateritic bauxite.

  7. Dynamic publication model for neurophysiology databases.

    PubMed

    Gardner, D; Abato, M; Knuth, K H; DeBellis, R; Erde, S M

    2001-08-29

    We have implemented a pair of database projects, one serving cortical electrophysiology and the other invertebrate neurones and recordings. The design for each combines aspects of two proven schemes for information interchange. The journal article metaphor determined the type, scope, organization and quantity of data to comprise each submission. Sequence databases encouraged intuitive tools for data viewing, capture, and direct submission by authors. Neurophysiology required transcending these models with new datatypes. Time-series, histogram and bivariate datatypes, including illustration-like wrappers, were selected by their utility to the community of investigators. As interpretation of neurophysiological recordings depends on context supplied by metadata attributes, searches are via visual interfaces to sets of controlled-vocabulary metadata trees. Neurones, for example, can be specified by metadata describing functional and anatomical characteristics. Permanence is advanced by data model and data formats largely independent of contemporary technology or implementation, including Java and the XML standard. All user tools, including dynamic data viewers that serve as a virtual oscilloscope, are Java-based, free, multiplatform, and distributed by our application servers to any contemporary networked computer. Copyright is retained by submitters; viewer displays are dynamic and do not violate copyright of related journal figures. Panels of neurophysiologists view and test schemas and tools, enhancing community support.

  8. Dynamics of Fst for the island model.

    PubMed

    Rottenstreich, Sivan; Hamilton, Matthew B; Miller, Judith R

    2007-12-01

    F(st) is a measure of genetic differentiation in a subdivided population. Sewall Wright observed that F(st)=1/1+2Nm in a haploid diallelic infinite island model, where N is the effective population size of each deme and m is the migration rate. In demonstrating this result, Wright relied on the infinite size of the population. Natural populations are not infinite and therefore they change over time due to genetic drift. In a finite population, F(st) becomes a random variable that evolves over time. In this work we ask, given an initial population state, what are the dynamics of the mean and variance of F(st) under the finite island model? In application both of these quantities are critical in the evaluation of F(st) data. We show that after a time of order N generations the mean of F(st) is slightly biased below 1/1+2Nm. Further we show that the variance of F(st) is of order 1/d where d is the number of demes in the population. We introduce several new mathematical techniques to analyze coalescent genealogies in a dynamic setting.

  9. Modeling Insurgent Network Structure and Dynamics

    NASA Astrophysics Data System (ADS)

    Gabbay, Michael; Thirkill-Mackelprang, Ashley

    2010-03-01

    We present a methodology for mapping insurgent network structure based on their public rhetoric. Indicators of cooperative links between insurgent groups at both the leadership and rank-and-file levels are used, such as joint policy statements or joint operations claims. In addition, a targeting policy measure is constructed on the basis of insurgent targeting claims. Network diagrams which integrate these measures of insurgent cooperation and ideology are generated for different periods of the Iraqi and Afghan insurgencies. The network diagrams exhibit meaningful changes which track the evolution of the strategic environment faced by insurgent groups. Correlations between targeting policy and network structure indicate that insurgent targeting claims are aimed at establishing a group identity among the spectrum of rank-and-file insurgency supporters. A dynamical systems model of insurgent alliance formation and factionalism is presented which evolves the relationship between insurgent group dyads as a function of their ideological differences and their current relationships. The ability of the model to qualitatively and quantitatively capture insurgent network dynamics observed in the data is discussed.

  10. Aggregate Dynamics in AN Evolutionary Network Model

    NASA Astrophysics Data System (ADS)

    Seufert, Adrian M.; Schweitzer, Frank

    We analyze a model of interacting agents (e.g. prebiotic chemical species) which are represented by nodes of a network, whereas their interactions are mapped onto directed links between these nodes. On a fast time scale, each agent follows an eigendynamics based on catalytic support from other nodes, whereas on a much slower time scale the network evolves through selection and mutation of its nodes-agent. In the first part of the paper, we explain the dynamics of the model by means of characteristic snapshots of the network evolution and confirm earlier findings on crashes and recoveries in the network structure. In the second part, we focus on the aggregate behavior of the network dynamics. We show that the disruptions in the network structure are smoothed out, so that the average evolution can be described by a growth regime followed by a saturation regime, without an initial random regime. For the saturation regime, we obtain a logarithmic scaling between the average connectivity per node s and a parameter m, describing the average incoming connectivity, which is independent of the system size N.

  11. Modeling habitat dynamics accounting for possible misclassification

    USGS Publications Warehouse

    Veran, Sophie; Kleiner, Kevin J.; Choquet, Remi; Collazo, Jaime; Nichols, James D.

    2012-01-01

    Land cover data are widely used in ecology as land cover change is a major component of changes affecting ecological systems. Landscape change estimates are characterized by classification errors. Researchers have used error matrices to adjust estimates of areal extent, but estimation of land cover change is more difficult and more challenging, with error in classification being confused with change. We modeled land cover dynamics for a discrete set of habitat states. The approach accounts for state uncertainty to produce unbiased estimates of habitat transition probabilities using ground information to inform error rates. We consider the case when true and observed habitat states are available for the same geographic unit (pixel) and when true and observed states are obtained at one level of resolution, but transition probabilities estimated at a different level of resolution (aggregations of pixels). Simulation results showed a strong bias when estimating transition probabilities if misclassification was not accounted for. Scaling-up does not necessarily decrease the bias and can even increase it. Analyses of land cover data in the Southeast region of the USA showed that land change patterns appeared distorted if misclassification was not accounted for: rate of habitat turnover was artificially increased and habitat composition appeared more homogeneous. Not properly accounting for land cover misclassification can produce misleading inferences about habitat state and dynamics and also misleading predictions about species distributions based on habitat. Our models that explicitly account for state uncertainty should be useful in obtaining more accurate inferences about change from data that include errors.

  12. Microscopic to Macroscopic Dynamical Models of Sociality

    NASA Astrophysics Data System (ADS)

    Solis Salas, Citlali; Woolley, Thomas; Pearce, Eiluned; Dunbar, Robin; Maini, Philip; Social; Evolutionary Neuroscience Research Group (Senrg) Collaboration

    To help them survive, social animals, such as humans, need to share knowledge and responsibilities with other members of the species. The larger their social network, the bigger the pool of knowledge available to them. Since time is a limited resource, a way of optimising its use is meeting amongst individuals whilst fulfilling other necessities. In this sense it is useful to know how many, and how often, early humans could meet during a given period of time whilst performing other necessary tasks, such as food gathering. Using a simplified model of these dynamics, which comprehend encounter and memory, we aim at producing a lower-bound to the number of meetings hunter-gatherers could have during a year. We compare the stochastic agent-based model to its mean-field approximation and explore some of the features necessary for the difference between low population dynamics and its continuum limit. We observe an emergent property that could have an inference in the layered structure seen in each person's social organisation. This could give some insight into hunter-gatherer's lives and the development of the social layered structure we have today. With support from the Mexican Council for Science and Technology (CONACyT), the Public Education Secretariat (SEP), and the Mexican National Autonomous University's Foundation (Fundacion UNAM).

  13. Coordinated supply chain dynamic production planning model

    NASA Astrophysics Data System (ADS)

    Chandra, Charu; Grabis, Janis

    2001-10-01

    Coordination of different and often contradicting interests of individual supply chain members is one of the important issues in supply chain management because the individual members can not succeed without success of the supply chain and vice versa. This paper investigates a supply chain dynamic production planning problem with emphasis on coordination. A planning problem is formally described using a supply chain kernel, which defines supply chain configuration, management policies, available resources and objectives both at supply chain or macro and supply chain member or micro levels. The coordinated model is solved in order to balance decisions made at the macro and micro levels and members' profitability is used as the coordination criterion. The coordinated model is used to determine inventory levels and production capacity across the supply chain. Application of the coordinated model distributes costs burden uniformly among supply chain members and preserves overall efficiency of the supply chain. Influence of the demand series uncertainty is investigated. The production planning model is a part of the integrated supply chain decision modeling system, which is shared among the supply chain members across the Internet.

  14. Computational Fluid Dynamics Modeling of Bacillus anthracis ...

    EPA Pesticide Factsheets

    Journal Article Three-dimensional computational fluid dynamics and Lagrangian particle deposition models were developed to compare the deposition of aerosolized Bacillus anthracis spores in the respiratory airways of a human with that of the rabbit, a species commonly used in the study of anthrax disease. The respiratory airway geometries for each species were derived from computed tomography (CT) or µCT images. Both models encompassed airways that extended from the external nose to the lung with a total of 272 outlets in the human model and 2878 outlets in the rabbit model. All simulations of spore deposition were conducted under transient, inhalation-exhalation breathing conditions using average species-specific minute volumes. Four different exposure scenarios were modeled in the rabbit based upon experimental inhalation studies. For comparison, human simulations were conducted at the highest exposure concentration used during the rabbit experimental exposures. Results demonstrated that regional spore deposition patterns were sensitive to airway geometry and ventilation profiles. Despite the complex airway geometries in the rabbit nose, higher spore deposition efficiency was predicted in the upper conducting airways of the human at the same air concentration of anthrax spores. This greater deposition of spores in the upper airways in the human resulted in lower penetration and deposition in the tracheobronchial airways and the deep lung than that predict

  15. Multi-Scale Modeling of Magnetospheric Dynamics

    NASA Technical Reports Server (NTRS)

    Kuznetsova, M. M.; Hesse, M.; Toth, G.

    2012-01-01

    Magnetic reconnection is a key element in many phenomena in space plasma, e.g. Coronal mass Ejections, Magnetosphere substorms. One of the major challenges in modeling the dynamics of large-scale systems involving magnetic reconnection is to quantifY the interaction between global evolution of the magnetosphere and microphysical kinetic processes in diffusion regions near reconnection sites. Recent advances in small-scale kinetic modeling of magnetic reconnection significantly improved our understanding of physical mechanisms controlling the dissipation in the vicinity of the reconnection site in collisionless plasma. However the progress in studies of small-scale geometries was not very helpful for large scale simulations. Global magnetosphere simulations usually include non-ideal processes in terms of numerical dissipation and/or ad hoc anomalous resistivity. Comparative studies of magnetic reconnection in small scale geometries demonstrated that MHD simulations that included non-ideal processes in terms of a resistive term 11 J did not produce fast reconnection rates observed in kinetic simulations. In collisionless magnetospheric plasma, the primary mechanism controlling the dissipation in the vicinity of the reconnection site is nongyrotropic pressure effects with spatial scales comparable with the particle Larmor radius. We utilize the global MHD code BATSRUS and replace ad hoc parameters such as "critical current density" and "anomalous resistivity" with a physically motivated model of dissipation. The primary mechanism controlling the dissipation in the vicinity of the reconnection site in incorporated into MHD description in terms of non-gyrotropic corrections to the induction equation. We will demonstrate that kinetic nongyrotropic effects can significantly alter the global magnetosphere evolution. Our approach allowed for the first time to model loading/unloading cycle in response to steady southward IMF driving. The role of solar wind parameters and

  16. Dynamical Models of Terrestrial Planet Formation

    NASA Astrophysics Data System (ADS)

    Lunine, Jonathan I.; O'brien, David P.; Raymond, Sean N.; Morbidelli, Alessandro; Quinn, Thomas; Graps, Amara L.

    2011-02-01

    We review the problem of the formation of terrestrial planets, with particular emphasis on the interaction of dynamical and geochemical models. The lifetime of gas around stars in the process of formation is limited to a few million years based on astronomical observations, while isotopic dating of meteorites and the Earth-Moon system suggest that perhaps 50-100 million years were required for the assembly of the Earth. Therefore, much of the growth of the terrestrial planets in our own system is presumed to have taken place under largely gas-free conditions, and the physics of terrestrial planet formation is dominated by gravitational interactions and collisions. The earliest phase of terrestrial-planet formation involve the growth of km-sized or larger planetesimals from dust grains, followed by the accumulations of these planetesimals into ∼100 lunar- to Mars-mass bodies that are initially gravitationally isolated from one-another in a swarm of smaller planetesimals, but eventually grow to the point of significantly perturbing one-another. The mutual perturbations between the embryos, combined with gravitational stirring by Jupiter, lead to orbital crossings and collisions that drive the growth to Earth-sized planets on a timescale of 107-108 years. Numerical treatment of this process has focussed on the use of symplectic integrators which can rapidy integrate the thousands of gravitationally-interacting bodies necessary to accurately model planetary growth. While the general nature of the terrestrial planets-their sizes and orbital parameters-seem to be broadly reproduced by the models, there are still some outstanding dynamical issues. One of these is the presence of an embryo-sized body, Mars, in our system in place of the more massive objects that simulations tend to yield. Another is the effect such impacts have on the geochemistry of the growing planets; re-equilibration of isotopic ratios of major elements during giant impacts (for example) must be

  17. Dynamic thermodiffusion model for binary liquid mixtures

    NASA Astrophysics Data System (ADS)

    Eslamian, Morteza; Saghir, M. Ziad

    2009-07-01

    Following the nonequilibrium thermodynamics approach, we develop a dynamic model to emulate thermo-diffusion process and propose expressions for estimating the thermal diffusion factor in binary nonassociating liquid mixtures. Here, we correlate the net heat of transport in thermodiffusion with parameters, such as the mixture temperature and pressure, the size and shape of the molecules, and mobility of the components, because the molecules have to become activated before they can move. Based on this interpretation, the net heat of transport of each component can be somehow related to the viscosity and the activation energy of viscous flow of the same component defined in Eyring’s reaction-rate theory [S. Glasstone, K. J. Laidler, and H. Eyring, The Theory of Rate Processes: The Kinetics of Chemical Reactions, Viscosity, Diffusion and Electrochemical Phenomena (McGraw-Hill, New York, 1941)]. This modeling approach is different from that of Haase and Kempers, in which thermodiffusion is considered as a function of the thermostatic properties of the mixture such as enthalpy. In simulating thermodiffusion, by correlating the net heat of transport with the activation energy of viscous flow, effects of the above mentioned parameters are accounted for, to some extent of course. The model developed here along with Haase-Kempers and Drickamer-Firoozabadi models linked with the Peng-Robinson equation of sate are evaluated against the experimental data for several recent nonassociating binary mixtures at various temperatures, pressures, and concentrations. Although the model prediction is still not perfect, the model is simple and easy to use, physically justified, and predicts the experimental data very good and much better than the existing models.

  18. Dynamic thermodiffusion model for binary liquid mixtures.

    PubMed

    Eslamian, Morteza; Saghir, M Ziad

    2009-07-01

    Following the nonequilibrium thermodynamics approach, we develop a dynamic model to emulate thermo-diffusion process and propose expressions for estimating the thermal diffusion factor in binary nonassociating liquid mixtures. Here, we correlate the net heat of transport in thermodiffusion with parameters, such as the mixture temperature and pressure, the size and shape of the molecules, and mobility of the components, because the molecules have to become activated before they can move. Based on this interpretation, the net heat of transport of each component can be somehow related to the viscosity and the activation energy of viscous flow of the same component defined in Eyring's reaction-rate theory [S. Glasstone, K. J. Laidler, and H. Eyring, (McGraw-Hill, New York, 1941)]. This modeling approach is different from that of Haase and Kempers, in which thermodiffusion is considered as a function of the thermostatic properties of the mixture such as enthalpy. In simulating thermodiffusion, by correlating the net heat of transport with the activation energy of viscous flow, effects of the above mentioned parameters are accounted for, to some extent of course. The model developed here along with Haase-Kempers and Drickamer-Firoozabadi models linked with the Peng-Robinson equation of sate are evaluated against the experimental data for several recent nonassociating binary mixtures at various temperatures, pressures, and concentrations. Although the model prediction is still not perfect, the model is simple and easy to use, physically justified, and predicts the experimental data very good and much better than the existing models.

  19. A two-stage dynamic model for visual tracking.

    PubMed

    Kristan, Matej; Kovacic, Stanislav; Leonardis, Aleš; Pers, Janez

    2010-12-01

    We propose a new dynamic model which can be used within blob trackers to track the target's center of gravity. A strong point of the model is that it is designed to track a variety of motions which are usually encountered in applications such as pedestrian tracking, hand tracking, and sports. We call the dynamic model a two-stage dynamic model due to its particular structure, which is a composition of two models: a liberal model and a conservative model. The liberal model allows larger perturbations in the target's dynamics and is able to account for motions in between the random-walk dynamics and the nearly constant-velocity dynamics. On the other hand, the conservative model assumes smaller perturbations and is used to further constrain the liberal model to the target's current dynamics. We implement the two-stage dynamic model in a two-stage probabilistic tracker based on the particle filter and apply it to two separate examples of blob tracking: 1) tracking entire persons and 2) tracking of a person's hands. Experiments show that, in comparison to the widely used models, the proposed two-stage dynamic model allows tracking with smaller number of particles in the particle filter (e.g., 25 particles), while achieving smaller errors in the state estimation and a smaller failure rate. The results suggest that the improved performance comes from the model's ability to actively adapt to the target's motion during tracking.

  20. Dynamic hysteresis modeling including skin effect using diffusion equation model

    NASA Astrophysics Data System (ADS)

    Hamada, Souad; Louai, Fatima Zohra; Nait-Said, Nasreddine; Benabou, Abdelkader

    2016-07-01

    An improved dynamic hysteresis model is proposed for the prediction of hysteresis loop of electrical steel up to mean frequencies, taking into account the skin effect. In previous works, the analytical solution of the diffusion equation for low frequency (DELF) was coupled with the inverse static Jiles-Atherton (JA) model in order to represent the hysteresis behavior for a lamination. In the present paper, this approach is improved to ensure the reproducibility of measured hysteresis loops at mean frequency. The results of simulation are compared with the experimental ones. The selected results for frequencies 50 Hz, 100 Hz, 200 Hz and 400 Hz are presented and discussed.

  1. A simple dynamic model of respiratory pump.

    PubMed

    Calabrese, Pascale; Baconnier, Pierre; Laouani, Aicha; Fontecave-Jallon, Julie; Guméry, Pierre-Yves; Eberhard, André; Benchetrit, Gila

    2010-09-01

    To study the interaction of forces that produce chest wall motion, we propose a model based on the lever system of Hillman and Finucane (J Appl Physiol 63(3):951-961, 1987) and introduce some dynamic properties of the respiratory system. The passive elements (rib cage and abdomen) are considered as elastic compartments linked to the open air via a resistive tube, an image of airways. The respiratory muscles (active) force is applied to both compartments. Parameters of the model are identified in using experimental data of airflow signal measured by pneumotachography and rib cage and abdomen signals measured by respiratory inductive plethysmography on eleven healthy volunteers in five conditions: at rest and with four level of added loads. A breath by breath analysis showed, whatever the individual and the condition are, that there are several breaths on which the airflow simulated by our model is well fitted to the airflow measured by pneumotachography as estimated by a determination coefficient R(2) > or = 0.70. This very simple model may well represent the behaviour of the chest wall and thus may be useful to interpret the relative motion of rib cage and abdomen during quiet breathing.

  2. A nonlinear dynamic analogue model of substorms

    NASA Astrophysics Data System (ADS)

    Klimas, A. J.; Baker, D. N.; Roberts, D. A.; Fairfield, D. H.; Büchner, J.

    Linear prediction filter studies have shown that the magnetospheric response to energy transfer from the solar wind contains both directly driven and unloading components. These studies have also shown that the magnetospheric response is significantly nonlinear and, thus, the linear prediction filtering technique and other correlative techniques which assume a linear magnetospheric response cannot give a complete deacription of that response. Here, the solar wind-magnetosphere interaction is discussed within the framework of deterministic nonlinear dynamics. An earlier dripping faucet mechanical analogue to the magnetosphere is first reviewed and then the plasma physical counterpart to the mechanical model is constructed. A Faraday loop in the magnetotail is considered and the relationship of electric potentials on the loop to changes in the magnetic flux threading the loop is developed. This approach leads to a model of geomagnetic activity which is similar to the earlier mechanical model but described in terms of the geometry and plasma contents of the magnetotail. This Faraday loop response model contains analogues to both the directly driven and the storage-release magnetospheric responses and it includes, in a fundamental way, the inherent nonlinearity of the solar wind-magnetosphere system. It can be chancterized as a nonlinear, damped harmonic oscillator that is driven by the loading-unloading substorm cycle. The model is able to explain many of the features of the linear prediction filter results. In particular, at low geomagnetic activity levels the model exbibits the "regular dripping" response which provides an explanation for the unloading component at 1 hour lag in the linear prediction filters. Further, the model suggests that the disappearance of the unloading component in the linear prediction filters at high geomagnetic activity levels is due to a chaotic transition beyond which the loading-unloading mechanism becomes aperiodic. The model predicts

  3. Computational modeling of intraocular gas dynamics

    NASA Astrophysics Data System (ADS)

    Noohi, P.; Abdekhodaie, M. J.; Cheng, Y. L.

    2015-12-01

    The purpose of this study was to develop a computational model to simulate the dynamics of intraocular gas behavior in pneumatic retinopexy (PR) procedure. The presented model predicted intraocular gas volume at any time and determined the tolerance angle within which a patient can maneuver and still gas completely covers the tear(s). Computational fluid dynamics calculations were conducted to describe PR procedure. The geometrical model was constructed based on the rabbit and human eye dimensions. SF6 in the form of pure and diluted with air was considered as the injected gas. The presented results indicated that the composition of the injected gas affected the gas absorption rate and gas volume. After injection of pure SF6, the bubble expanded to 2.3 times of its initial volume during the first 23 h, but when diluted SF6 was used, no significant expansion was observed. Also, head positioning for the treatment of retinal tear influenced the rate of gas absorption. Moreover, the determined tolerance angle depended on the bubble and tear size. More bubble expansion and smaller retinal tear caused greater tolerance angle. For example, after 23 h, for the tear size of 2 mm the tolerance angle of using pure SF6 is 1.4 times more than that of using diluted SF6 with 80% air. Composition of the injected gas and conditions of the tear in PR may dramatically affect the gas absorption rate and gas volume. Quantifying these effects helps to predict the tolerance angle and improve treatment efficiency.

  4. A Dynamic Fountain Model for Lunar Dust

    NASA Technical Reports Server (NTRS)

    Stubbs, T. J.; Vondrak, R. R.; Farrell, W. M.

    2005-01-01

    During the Apollo era of exploration it was discovered that sunlight was scattered at the terminators giving rise to horizon glow and streamers above the lunar surface. This was observed from the dark side of the Moon during sunset and sunrise by both surface landers and astronauts in orbit. These observations were quite unexpected, as the Moon was thought to be a pristine environment with a negligible atmosphere or exosphere. Subsequent investigations have shown that the sunlight was most likely scattered by electrostatically charged dust grains originating from the surface. It has since been demonstrated that this dust population could have serious implications for astronomical observations from the lunar surface. The lunar surface is electrostatically charged by the Moon s large-scale interaction with the local plasma environment and the photoemission of electrons due to solar ultra-violet (UV) light and X-rays. The like-charged surface and dust grains then act to repel each other, such that under certain conditions the dust grains are lifted above the surface. We present a dynamic fountain model which can explain how sub-micron dust is able to reach altitudes of up to approximately 100 km above the lunar surface. Previous static dust levitation models are most applicable to the heavier micron-sized grains in close proximity proximity to the surface, but they cannot explain the presence of extremely light grains at high altitudes. If we relax the static constraint applied to previous models, and instead assume that the grains are in constant motion (under the action of dynamic forces), a new picture emerges for the behavior of sub-micron lunar dust.

  5. Computational modeling of intraocular gas dynamics.

    PubMed

    Noohi, P; Abdekhodaie, M J; Cheng, Y L

    2015-12-18

    The purpose of this study was to develop a computational model to simulate the dynamics of intraocular gas behavior in pneumatic retinopexy (PR) procedure. The presented model predicted intraocular gas volume at any time and determined the tolerance angle within which a patient can maneuver and still gas completely covers the tear(s). Computational fluid dynamics calculations were conducted to describe PR procedure. The geometrical model was constructed based on the rabbit and human eye dimensions. SF6 in the form of pure and diluted with air was considered as the injected gas. The presented results indicated that the composition of the injected gas affected the gas absorption rate and gas volume. After injection of pure SF6, the bubble expanded to 2.3 times of its initial volume during the first 23 h, but when diluted SF6 was used, no significant expansion was observed. Also, head positioning for the treatment of retinal tear influenced the rate of gas absorption. Moreover, the determined tolerance angle depended on the bubble and tear size. More bubble expansion and smaller retinal tear caused greater tolerance angle. For example, after 23 h, for the tear size of 2 mm the tolerance angle of using pure SF6 is 1.4 times more than that of using diluted SF6 with 80% air. Composition of the injected gas and conditions of the tear in PR may dramatically affect the gas absorption rate and gas volume. Quantifying these effects helps to predict the tolerance angle and improve treatment efficiency.

  6. Bio-Inspired Neural Model for Learning Dynamic Models

    NASA Technical Reports Server (NTRS)

    Duong, Tuan; Duong, Vu; Suri, Ronald

    2009-01-01

    A neural-network mathematical model that, relative to prior such models, places greater emphasis on some of the temporal aspects of real neural physical processes, has been proposed as a basis for massively parallel, distributed algorithms that learn dynamic models of possibly complex external processes by means of learning rules that are local in space and time. The algorithms could be made to perform such functions as recognition and prediction of words in speech and of objects depicted in video images. The approach embodied in this model is said to be "hardware-friendly" in the following sense: The algorithms would be amenable to execution by special-purpose computers implemented as very-large-scale integrated (VLSI) circuits that would operate at relatively high speeds and low power demands.

  7. Analytic wave model of Stark deceleration dynamics

    SciTech Connect

    Gubbels, Koos; Meijer, Gerard; Friedrich, Bretislav

    2006-06-15

    Stark deceleration relies on time-dependent inhomogeneous electric fields which repetitively exert a decelerating force on polar molecules. Fourier analysis reveals that such fields, generated by an array of field stages, consist of a superposition of partial waves with well-defined phase velocities. Molecules whose velocities come close to the phase velocity of a given wave get a ride from that wave. For a square-wave temporal dependence of the Stark field, the phase velocities of the waves are found to be odd-fraction multiples of a fundamental phase velocity {lambda}/{tau}, with {lambda} and {tau} the spatial and temporal periods of the field. Here we study explicitly the dynamics due to any of the waves as well as due to their mutual perturbations. We first solve the equations of motion for the case of single-wave interactions and exploit their isomorphism with those for the biased pendulum. Next we analyze the perturbations of the single-wave dynamics by other waves and find that these have no net effect on the phase stability of the acceleration or deceleration process. Finally, we find that a packet of molecules can also ride a wave which results from an interference of adjacent waves. In this case, small phase stability areas form around phase velocities that are even-fraction multiples of the fundamental velocity. A detailed comparison with classical trajectory simulations and with experiment demonstrates that the analytic 'wave model' encompasses all the longitudinal physics encountered in a Stark decelerator.

  8. Modelling of the Pele Fragmentation Dynamics

    NASA Astrophysics Data System (ADS)

    Verreault, Jimmy

    2013-06-01

    The Penetrator with Enhanced Lateral Effect (PELE) is a type of explosive-free projectile that undergoes radial fragmentation upon an impact with a target plate. This type of projectile is composed of a brittle cylindrical shell (the jacket) filled in its core with a material characterized with a large Poisson's ratio. Upon an impact with a target, the axial compression causes the filling to expand in the radial direction. However, due to the brittleness of the jacket material, very little radial deformation can occur which creates a radial stress between the two materials and a hoop stress in the jacket. Fragmentation of the jacket occurs if the hoop stress exceeds the material's ultimate stress. The PELE fragmentation dynamics is explored via Finite-Element Method (FEM) simulations using the AUTODYN explicit dynamics hydrocode. The numerical results are compared with an analytical model based on wave interactions, as well as with the experimental investigation of Paulus and Schirm (1996). The comparison is based on the mechanical stress in the filling, the resulting radial velocity of the fragments, the number of fragments generated and their mass distribution.

  9. Modelling of the PELE fragmentation dynamics

    NASA Astrophysics Data System (ADS)

    Verreault, J.

    2014-05-01

    The Penetrator with Enhanced Lateral Effect (PELE) is a type of explosive-free projectile that undergoes radial fragmentation upon an impact with a target plate. This type of projectile is composed of a brittle cylindrical shell (the jacket) filled in its core with a material characterized with a large Poisson's ratio. Upon an impact with a target, the axial compression causes the filling to expand in the radial direction. However, due to the brittleness of the jacket material, very little radial deformation can occur which creates a radial stress between the two materials and a hoop stress in the jacket. Fragmentation of the jacket occurs if the hoop stress exceeds the material's ultimate stress. The PELE fragmentation dynamics is explored via Finite-Element Method (FEM) simulations using the Autodyn explicit dynamics hydrocode. The numerical results are compared with an analytical model based on wave interactions, as well as with the experimental investigation of Paulus and Schirm (1996). The comparison is based on the mechanical stress in the filling and the qualitative fragmentation of the jacket.

  10. Nonlinear dynamical model of human gait

    NASA Astrophysics Data System (ADS)

    West, Bruce J.; Scafetta, Nicola

    2003-05-01

    We present a nonlinear dynamical model of the human gait control system in a variety of gait regimes. The stride-interval time series in normal human gait is characterized by slightly multifractal fluctuations. The fractal nature of the fluctuations becomes more pronounced under both an increase and decrease in the average gait. Moreover, the long-range memory in these fluctuations is lost when the gait is keyed on a metronome. Human locomotion is controlled by a network of neurons capable of producing a correlated syncopated output. The central nervous system is coupled to the motocontrol system, and together they control the locomotion of the gait cycle itself. The metronomic gait is simulated by a forced nonlinear oscillator with a periodic external force associated with the conscious act of walking in a particular way.

  11. Molecular modelling and molecular dynamics of CFTR.

    PubMed

    Callebaut, Isabelle; Hoffmann, Brice; Lehn, Pierre; Mornon, Jean-Paul

    2017-01-01

    The cystic fibrosis transmembrane conductance regulator (CFTR) protein is a member of the ATP-binding cassette (ABC) transporter superfamily that functions as an ATP-gated channel. Considerable progress has been made over the last years in the understanding of the molecular basis of the CFTR functions, as well as dysfunctions causing the common genetic disease cystic fibrosis (CF). This review provides a global overview of the theoretical studies that have been performed so far, especially molecular modelling and molecular dynamics (MD) simulations. A special emphasis is placed on the CFTR-specific evolution of an ABC transporter framework towards a channel function, as well as on the understanding of the effects of disease-causing mutations and their specific modulation. This in silico work should help structure-based drug discovery and design, with a view to develop CFTR-specific pharmacotherapeutic approaches for the treatment of CF in the context of precision medicine.

  12. Modeling the dynamics of piano keys

    NASA Astrophysics Data System (ADS)

    Brenon, Celine; Boutillon, Xavier

    2003-10-01

    The models of piano keys available in the literature are crude: two degrees of freedom and a very few dynamical or geometrical parameters. Experiments on different piano mechanisms (upright, grand, one type of numerical keyboard) exhibit strong differences in the two successive phases of the key motion which are controlled by the finger. Understanding the controllability of the escapement velocity (typically a few percents for professional pianists), the differences between upright and grand pianos, the rationale for the numerous independent adjustments by technicians, and the feel by the pianist require sophisticated modeling. In addition to the inertia of the six independently moving parts of a grand piano mechanism, a careful modeling of friction at pivots and between the jack and the roll, of damping and nonlinearities in felts, and of internal springs will be presented. Simulations will be confronted to the measurements of the motions of the different parts. Currently, the first phase of the motion and the transition to the second phase are well understood while some progress must still be made in order to describe correctly this short but important phase before the escapement of the hammer. [Work done in part at the Laboratory for Musical Acoustics, Paris.

  13. Dynamic model of flexible phytoplankton nutrient uptake

    PubMed Central

    Bonachela, Juan A.; Raghib, Michael; Levin, Simon A.

    2011-01-01

    The metabolic machinery of marine microbes can be remarkably plastic, allowing organisms to persist under extreme nutrient limitation. With some exceptions, most theoretical approaches to nutrient uptake in phytoplankton are largely dominated by the classic Michaelis–Menten (MM) uptake functional form, whose constant parameters cannot account for the observed plasticity in the uptake apparatus. Following seminal ideas by earlier researchers, we propose a simple cell-level model based on a dynamic view of the uptake process whereby the cell can regulate the synthesis of uptake proteins in response to changes in both internal and external nutrient concentrations. In our flexible approach, the maximum uptake rate and nutrient affinity increase monotonically as the external nutrient concentration decreases. For low to medium nutrient availability, our model predicts uptake and growth rates larger than the classic MM counterparts, while matching the classic MM results for large nutrient concentrations. These results have important consequences for global coupled models of ocean circulation and biogeochemistry, which lack this regulatory mechanism and are thus likely to underestimate phytoplankton abundances and growth rates in oligotrophic regions of the ocean. PMID:22143781

  14. Persistent agents in Axelrod's social dynamics model

    NASA Astrophysics Data System (ADS)

    Reia, Sandro M.; Neves, Ubiraci P. C.

    2016-01-01

    Axelrod's model of social dynamics has been studied under the effect of external media. Here we study the formation of cultural domains in the model by introducing persistent agents. These are agents whose cultural traits are not allowed to change but may be spread through local neighborhood. In the absence of persistent agents, the system is known to present a transition from a monocultural to a multicultural regime at some critical Q (number of traits). Our results reveal a dependence of critical Q on the occupation probability p of persistent agents and we obtain the phase diagram of the model in the (p,Q) -plane. The critical locus is explained by the competition of two opposite forces named here barrier and bonding effects. Such forces are verified to be caused by non-persistent agents which adhere (adherent agents) to the set of traits of persistent ones. The adherence (concentration of adherent agents) as a function of p is found to decay for constant Q. Furthermore, adherence as a function of Q is found to decay as a power law with constant p.

  15. CIDGA - Coupling of Interior Dynamic models with Global Atmosphere models

    NASA Astrophysics Data System (ADS)

    Noack, Lena; Plesa, Ana-Catalina; Breuer, Doris

    2010-05-01

    Atmosphere temperatures and in particular the surface temperatures mostly depend on the solar heat flux and the atmospheric composition. The latter can be influenced by interior processes of the planet, i.e. volcanism that releases greenhouse gases such as H2O, CO2 and methane into the atmosphere and plate tectonics through which atmospheric CO2 is recycled via carbonates into the mantle. An increasing concentration of greenhouse gases in the atmosphere results in an increase of the surface temperature. Changes in the surface temperature on the other hand may influence the cooling behaviour of the planet and hence influence its volcanic activity [Phillips et al., 2001]. This feedback relation between mantle convection and atmosphere is not very well understood, since until now mostly either the interior dynamic of a planet or its atmosphere was investigated separately. 2D or 3D mantle convection models to the authors' knowledge haven't been coupled to the atmosphere so far. We have used the 3D spherical simulation code GAIA [Hüttig et al., 2008] including partial melt production and coupled it with the atmosphere module CIDGA using a gray greenhouse model for varying H2O concentrations. This way, not only the influence of mantle dynamics on the atmosphere can be investigated, but also the recoupling effect, that the surface temperature has on the mantle dynamics. So far, we consider one-plate planets without crustal and thus volatile recycling. Phillips et al. [2001] already investigated the coupling effect of the surface temperature on mantle dynamics by using simple parameterized convection models for Venus. In their model a positive feedback mechanism has been observed, i.e., an increase of the surface temperature leads to an increase of partial melt and hence an increase of atmosphere density and surface temperature. Applying our model to Venus, we show that an increase of surface temperature leads not only to an increase of partial melt in the mantle; it also

  16. A dynamic model of reasoning and memory.

    PubMed

    Hawkins, Guy E; Hayes, Brett K; Heit, Evan

    2016-02-01

    Previous models of category-based induction have neglected how the process of induction unfolds over time. We conceive of induction as a dynamic process and provide the first fine-grained examination of the distribution of response times observed in inductive reasoning. We used these data to develop and empirically test the first major quantitative modeling scheme that simultaneously accounts for inductive decisions and their time course. The model assumes that knowledge of similarity relations among novel test probes and items stored in memory drive an accumulation-to-bound sequential sampling process: Test probes with high similarity to studied exemplars are more likely to trigger a generalization response, and more rapidly, than items with low exemplar similarity. We contrast data and model predictions for inductive decisions with a recognition memory task using a common stimulus set. Hierarchical Bayesian analyses across 2 experiments demonstrated that inductive reasoning and recognition memory primarily differ in the threshold to trigger a decision: Observers required less evidence to make a property generalization judgment (induction) than an identity statement about a previously studied item (recognition). Experiment 1 and a condition emphasizing decision speed in Experiment 2 also found evidence that inductive decisions use lower quality similarity-based information than recognition. The findings suggest that induction might represent a less cautious form of recognition. We conclude that sequential sampling models grounded in exemplar-based similarity, combined with hierarchical Bayesian analysis, provide a more fine-grained and informative analysis of the processes involved in inductive reasoning than is possible solely through examination of choice data.

  17. Dynamic models in research and management of biological invasions.

    PubMed

    Buchadas, Ana; Vaz, Ana Sofia; Honrado, João P; Alagador, Diogo; Bastos, Rita; Cabral, João A; Santos, Mário; Vicente, Joana R

    2017-03-25

    Invasive species are increasing in number, extent and impact worldwide. Effective invasion management has thus become a core socio-ecological challenge. To tackle this challenge, integrating spatial-temporal dynamics of invasion processes with modelling approaches is a promising approach. The inclusion of dynamic processes in such modelling frameworks (i.e. dynamic or hybrid models, here defined as models that integrate both dynamic and static approaches) adds an explicit temporal dimension to the study and management of invasions, enabling the prediction of invasions and optimisation of multi-scale management and governance. However, the extent to which dynamic approaches have been used for that purpose is under-investigated. Based on a literature review, we examined the extent to which dynamic modelling has been used to address invasions worldwide. We then evaluated how the use of dynamic modelling has evolved through time in the scope of invasive species management. The results suggest that modelling, in particular dynamic modelling, has been increasingly applied to biological invasions, especially to support management decisions at local scales. Also, the combination of dynamic and static modelling approaches (hybrid models with a spatially explicit output) can be especially effective, not only to support management at early invasion stages (from prevention to early detection), but also to improve the monitoring of invasion processes and impact assessment. Further development and testing of such hybrid models may well be regarded as a priority for future research aiming to improve the management of invasions across scales.

  18. Kinematical and Dynamical Modeling of Elliptical Galaxies

    NASA Astrophysics Data System (ADS)

    Mamon, G. A.; Łokas, E.; Dekel, A.; Stoehr, F.; Cox, T. J.

    Elements of kinematical and dynamical modeling of elliptical galaxies are presented. In projection, NFW models resemble Sérsic models, but with a very narrow range of shapes (m=3±1). The total density profile of ellipticals cannot be NFW-like because the predicted local M/L and aperture velocity dispersion within an effective radius (R_e) are much lower than observed. Stars must then dominate ellipticals out to a few R_e. Fitting an NFW model to the total density profile of Sérsic+NFW (stars+dark matter [DM]) ellipticals results in very high concentration parameters, as found by X-ray observers. Kinematical modeling of ellipticals assuming an isotropic NFW DM model underestimates M/L at the virial radius by a factor of 1.6 to 2.4, because dissipationless ΛCDM halos have slightly different density profiles and slightly radial velocity anisotropy. In N-body+gas simulations of ellipticals as merger remnants of spirals embedded in DM halos, the slope of the DM density profile is steeper when the initial spiral galaxies are gas-rich. The Hansen & Moore (2006) relation between anisotropy and the slope of the density profile breaks down for gas and DM, but the stars follow an analogous relation with slightly less radial anisotropies for a given density slope. Using kurtosis (h_4) to infer anisotropy in ellipticals is dangerous, as h4 is also sensitive to small levels of rotation. The stationary Jeans equation provides accurate masses out to 8 R_e. The discrepancy between the modeling of Romanowsky et al. (2003), indicating a dearth of DM in ellipticals, and the simulations analyzed by Dekel et al. (2005), which match the spectroscopic observations of ellipticals, is partly due to radial anisotropy and to observing oblate ellipticals face-on. However, one of the 15 solutions to the orbit modeling of Romanowsky et al. is found to have an amount and concentration of DM consistent with ΛCDM predictions.

  19. Finite Mixture Dynamic Regression Modeling of Panel Data with Implications for Dynamic Response Analysis

    ERIC Educational Resources Information Center

    Kaplan, David

    2005-01-01

    This article considers the problem of estimating dynamic linear regression models when the data are generated from finite mixture probability density function where the mixture components are characterized by different dynamic regression model parameters. Specifically, conventional linear models assume that the data are generated by a single…

  20. An Extension Dynamic Model Based on BDI Agent

    NASA Astrophysics Data System (ADS)

    Yu, Wang; Feng, Zhu; Hua, Geng; WangJing, Zhu

    this paper's researching is based on the model of BDI Agent. Firstly, This paper analyze the deficiencies of the traditional BDI Agent model, Then propose an extension dynamic model of BDI Agent based on the traditional ones. It can quickly achieve the internal interaction of the tradition model of BDI Agent, deal with complex issues under dynamic and open environment and achieve quick reaction of the model. The new model is a natural and reasonable model by verifying the origin of civilization using the model of monkeys to eat sweet potato based on the design of the extension dynamic model. It is verified to be feasible by comparing the extended dynamic BDI Agent model with the traditional BDI Agent Model uses the SWARM, it has important theoretical significance.

  1. Dynamics in Higher Education Politics: A Theoretical Model

    ERIC Educational Resources Information Center

    Kauko, Jaakko

    2013-01-01

    This article presents a model for analysing dynamics in higher education politics (DHEP). Theoretically the model draws on the conceptual history of political contingency, agenda-setting theories and previous research on higher education dynamics. According to the model, socio-historical complexity can best be analysed along two dimensions: the…

  2. Dynamical models of Saturn's Phoebe ring

    NASA Astrophysics Data System (ADS)

    Tamayo, Daniel; Markham, Stephen; Hedman, Matthew M.; Burns, Joseph A.

    2014-05-01

    Saturn has the distinction of hosting the largest observed ring system in the solar sytem, the Phoebe Ring. Its vertical extent implicates Saturn’s irregular and distant satellite Phoebe as the source, with material being liberated through collisions. Owing to radiation forces, dusty debris is then swept inward toward Saturn on long timescales, spreading into a disk two orders of magnitude larger than Saturn’s more famous main rings. Previous work indicates that Saturn’s moon Iapetus should sweep up the majority of this infalling dark material. This would explain its striking two-faced surface, with one hemisphere ten times darker than the other. However, there is yet no direct observational confirmation of this mass transfer process. An important prediction for this model of Iapetus’ hemispherical dichotomy is that Iapetus should carve out an inner edge to the Phoebe ring. While scattered light from Saturn thwarts all attempts to detect this inner edge from Earth, we have recently developed a technique for detecting the Phoebe ring using the Cassini spacecraft. Preliminary work suggests we have found such an inner edge.In order to meaningfully interpret our findings, we require a dynamical model for the debris decaying inward from Phoebe. We will present the results of our analytical and numerical investigations.

  3. A dynamic model of Venus's gravity field

    NASA Technical Reports Server (NTRS)

    Kiefer, W. S.; Richards, M. A.; Hager, B. H.; Bills, B. G.

    1984-01-01

    Unlike Earth, long wavelength gravity anomalies and topography correlate well on Venus. Venus's admittance curve from spherical harmonic degree 2 to 18 is inconsistent with either Airy or Pratt isostasy, but is consistent with dynamic support from mantle convection. A model using whole mantle flow and a high viscosity near surface layer overlying a constant viscosity mantle reproduces this admittance curve. On Earth, the effective viscosity deduced from geoid modeling increases by a factor of 300 from the asthenosphere to the lower mantle. These viscosity estimates may be biased by the neglect of lateral variations in mantle viscosity associated with hot plumes and cold subducted slabs. The different effective viscosity profiles for Earth and Venus may reflect their convective styles, with tectonism and mantle heat transport dominated by hot plumes on Venus and by subducted slabs on Earth. Convection at degree 2 appears much stronger on Earth than on Venus. A degree 2 convective structure may be unstable on Venus, but may have been stabilized on Earth by the insulating effects of the Pangean supercontinental assemblage.

  4. Supercomputer modeling of volcanic eruption dynamics

    SciTech Connect

    Kieffer, S.W.; Valentine, G.A.; Woo, Mahn-Ling

    1995-06-01

    Our specific goals are to: (1) provide a set of models based on well-defined assumptions about initial and boundary conditions to constrain interpretations of observations of active volcanic eruptions--including movies of flow front velocities, satellite observations of temperature in plumes vs. time, and still photographs of the dimensions of erupting plumes and flows on Earth and other planets; (2) to examine the influence of subsurface conditions on exit plane conditions and plume characteristics, and to compare the models of subsurface fluid flow with seismic constraints where possible; (3) to relate equations-of-state for magma-gas mixtures to flow dynamics; (4) to examine, in some detail, the interaction of the flowing fluid with the conduit walls and ground topography through boundary layer theory so that field observations of erosion and deposition can be related to fluid processes; and (5) to test the applicability of existing two-phase flow codes for problems related to the generation of volcanic long-period seismic signals; (6) to extend our understanding and simulation capability to problems associated with emplacement of fragmental ejecta from large meteorite impacts.

  5. Supercomputer modeling of volcanic eruption dynamics

    NASA Astrophysics Data System (ADS)

    Kieffer, S. W.; Valentine, G. A.; Woo, Mahn-Ling

    1995-04-01

    Our specific goals are to: (1) provide a set of models based on well-defined assumptions about initial and boundary conditions to constrain interpretations of observations of active volcanic eruptions--including movies of flow front velocities, satellite observations of temperature in plumes vs. time, and still photographs of the dimensions of erupting plumes and flows on Earth and other planets; (2) examine the influence of subsurface conditions on exit plane conditions and plume characteristics, and to compare the models of subsurface fluid flow with seismic constraints where possible; (3) relate equations-of-state for magma-gas mixtures to flow dynamics; (4) examine, in some detail, the interaction of the flowing fluid with the conduit walls and ground topography through boundary layer theory so that field observations of erosion and deposition can be related to fluid processes; (5) test the applicability of existing two-phase flow codes for problems related to the generation of volcanic long-period seismic signals; and (6) to extend our understanding and simulation capability to problems associated with emplacement of fragmental ejecta from large meteorite impacts.

  6. A general dynamic model of flexible robot arms for control

    NASA Technical Reports Server (NTRS)

    Ding, X.; Tarn, T. J.; Bejczy, A. K.

    1989-01-01

    Hamilton's principle is used to derive the dynamic model for a large class of flexible robot arms. The resultant dynamic model consists of a system of partial differential-integral equations and the dynamic boundary conditions associated with it. Some properties of the model are observed, and its application to control is discussed. This model represents an infinite-dimensional nonlinear dynamic system and yet can be turned into a finite-dimensional system that could be obtained by modal expansion, if it is desired. This provides more flexibility for control purposes as well as for the analysis of the system.

  7. Dynamic modelling and analysis of space webs

    NASA Astrophysics Data System (ADS)

    Yu, Yang; Baoyin, HeXi; Li, JunFeng

    2011-04-01

    Future space missions demand operations on large flexible structures, for example, space webs, the lightweight cable nets deployable in space, which can serve as platforms for very large structures or be used to capture orbital objects. The interest in research on space webs is likely to increase in the future with the development of promising applications such as Furoshiki sat-ellite of JAXA, Robotic Geostationary Orbit Restorer (ROGER) of ESA and Grapple, Retrieve And Secure Payload (GRASP) of NASA. Unlike high-tensioned nets in civil engineering, space webs may be low-tensioned or tensionless, and extremely flexible, owing to the microgravity in the orbit and the lack of support components, which may cause computational difficulties. Mathematical models are necessary in the analysis of space webs, especially in the conceptual design and evaluation for prototypes. A full three-dimensional finite element (FE) model was developed in this work. Trivial truss elements were adopted to reduce the computational complexity. Considering cable is a compression-free material and its tensile stiffness is also variable, we introduced the cable material constitutive relationship to work out an accurate and feasible model for prototype analysis and design. In the static analysis, the stress distribution and global deformation of the webs were discussed to get access to the knowledge of strength of webs with different types of meshes. In the dynamic analysis, special attention was paid to the impact problem. The max stress and global deformation were investigated. The simulation results indicate the interesting phenomenon which may be worth further research.

  8. Bayesian Estimation of Random Coefficient Dynamic Factor Models

    ERIC Educational Resources Information Center

    Song, Hairong; Ferrer, Emilio

    2012-01-01

    Dynamic factor models (DFMs) have typically been applied to multivariate time series data collected from a single unit of study, such as a single individual or dyad. The goal of DFMs application is to capture dynamics of multivariate systems. When multiple units are available, however, DFMs are not suited to capture variations in dynamics across…

  9. Dynamic hysteretic sensing model of bending-mode Galfenol transducer

    SciTech Connect

    Cao, Shuying Zheng, Jiaju; Sang, Jie; Zhang, Pengfei; Wang, Bowen; Huang, Wenmei

    2015-05-07

    A dynamic hysteretic sensing model has been developed to predict the dynamic responses of the magnetic induction, the stress, and the output voltage for a bending-mode Galfenol unimorph transducer subjected simultaneously to acceleration and bias magnetic field. This model is obtained by coupling the hysteretic Armstrong model and the structural dynamic model of the Galfenol unimorph beam. The structural dynamic model of the beam is founded based on the Euler-Bernouli beam theory, the nonlinear constitutive equations, and the Faraday law of electromagnetic induction. Comparisons between the calculated and measured results show the model can describe dynamic nonlinear voltage characteristics of the device, and can predict hysteretic behaviors between the magnetic induction and the stress. Moreover, the model can effectively analyze the effects of the bias magnetic field, the acceleration amplitude, and frequency on the root mean square voltage of the device.

  10. A dynamic model for the Lagrangian stochastic dispersion coefficient

    SciTech Connect

    Pesmazoglou, I.; Navarro-Martinez, S.; Kempf, A. M.

    2013-12-15

    A stochastic sub-grid model is often used to accurately represent particle dispersion in turbulent flows using large eddy simulations. Models of this type have a free parameter, the dispersion coefficient, which is not universal and is strongly grid-dependent. In the present paper, a dynamic model for the evaluation of the coefficient is proposed and validated in decaying homogeneous isotropic turbulence. The grid dependence of the static coefficient is investigated in a turbulent mixing layer and compared to the dynamic model. The dynamic model accurately predicts dispersion statistics and resolves the grid-dependence. Dispersion statistics of the dynamically calculated constant are more accurate than any static coefficient choice for a number of grid spacings. Furthermore, the dynamic model produces less numerical artefacts than a static model and exhibits smaller sensitivity in the results predicted for different particle relaxation times.

  11. Dynamic hysteretic sensing model of bending-mode Galfenol transducer

    NASA Astrophysics Data System (ADS)

    Cao, Shuying; Zheng, Jiaju; Sang, Jie; Zhang, Pengfei; Wang, Bowen; Huang, Wenmei

    2015-05-01

    A dynamic hysteretic sensing model has been developed to predict the dynamic responses of the magnetic induction, the stress, and the output voltage for a bending-mode Galfenol unimorph transducer subjected simultaneously to acceleration and bias magnetic field. This model is obtained by coupling the hysteretic Armstrong model and the structural dynamic model of the Galfenol unimorph beam. The structural dynamic model of the beam is founded based on the Euler-Bernouli beam theory, the nonlinear constitutive equations, and the Faraday law of electromagnetic induction. Comparisons between the calculated and measured results show the model can describe dynamic nonlinear voltage characteristics of the device, and can predict hysteretic behaviors between the magnetic induction and the stress. Moreover, the model can effectively analyze the effects of the bias magnetic field, the acceleration amplitude, and frequency on the root mean square voltage of the device.

  12. Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence

    SciTech Connect

    Davtyan, Aram; Dama, James F.; Voth, Gregory A.; Andersen, Hans C.

    2015-04-21

    Coarse-grained (CG) models of molecular systems, with fewer mechanical degrees of freedom than an all-atom model, are used extensively in chemical physics. It is generally accepted that a coarse-grained model that accurately describes equilibrium structural properties (as a result of having a well constructed CG potential energy function) does not necessarily exhibit appropriate dynamical behavior when simulated using conservative Hamiltonian dynamics for the CG degrees of freedom on the CG potential energy surface. Attempts to develop accurate CG dynamic models usually focus on replacing Hamiltonian motion by stochastic but Markovian dynamics on that surface, such as Langevin or Brownian dynamics. However, depending on the nature of the system and the extent of the coarse-graining, a Markovian dynamics for the CG degrees of freedom may not be appropriate. In this paper, we consider the problem of constructing dynamic CG models within the context of the Multi-Scale Coarse-graining (MS-CG) method of Voth and coworkers. We propose a method of converting a MS-CG model into a dynamic CG model by adding degrees of freedom to it in the form of a small number of fictitious particles that interact with the CG degrees of freedom in simple ways and that are subject to Langevin forces. The dynamic models are members of a class of nonlinear systems interacting with special heat baths that were studied by Zwanzig [J. Stat. Phys. 9, 215 (1973)]. The properties of the fictitious particles can be inferred from analysis of the dynamics of all-atom simulations of the system of interest. This is analogous to the fact that the MS-CG method generates the CG potential from analysis of equilibrium structures observed in all-atom simulation data. The dynamic models generate a non-Markovian dynamics for the CG degrees of freedom, but they can be easily simulated using standard molecular dynamics programs. We present tests of this method on a series of simple examples that demonstrate that

  13. Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence

    NASA Astrophysics Data System (ADS)

    Davtyan, Aram; Dama, James F.; Voth, Gregory A.; Andersen, Hans C.

    2015-04-01

    Coarse-grained (CG) models of molecular systems, with fewer mechanical degrees of freedom than an all-atom model, are used extensively in chemical physics. It is generally accepted that a coarse-grained model that accurately describes equilibrium structural properties (as a result of having a well constructed CG potential energy function) does not necessarily exhibit appropriate dynamical behavior when simulated using conservative Hamiltonian dynamics for the CG degrees of freedom on the CG potential energy surface. Attempts to develop accurate CG dynamic models usually focus on replacing Hamiltonian motion by stochastic but Markovian dynamics on that surface, such as Langevin or Brownian dynamics. However, depending on the nature of the system and the extent of the coarse-graining, a Markovian dynamics for the CG degrees of freedom may not be appropriate. In this paper, we consider the problem of constructing dynamic CG models within the context of the Multi-Scale Coarse-graining (MS-CG) method of Voth and coworkers. We propose a method of converting a MS-CG model into a dynamic CG model by adding degrees of freedom to it in the form of a small number of fictitious particles that interact with the CG degrees of freedom in simple ways and that are subject to Langevin forces. The dynamic models are members of a class of nonlinear systems interacting with special heat baths that were studied by Zwanzig [J. Stat. Phys. 9, 215 (1973)]. The properties of the fictitious particles can be inferred from analysis of the dynamics of all-atom simulations of the system of interest. This is analogous to the fact that the MS-CG method generates the CG potential from analysis of equilibrium structures observed in all-atom simulation data. The dynamic models generate a non-Markovian dynamics for the CG degrees of freedom, but they can be easily simulated using standard molecular dynamics programs. We present tests of this method on a series of simple examples that demonstrate that

  14. A dynamic fault tree model of a propulsion system

    NASA Technical Reports Server (NTRS)

    Xu, Hong; Dugan, Joanne Bechta; Meshkat, Leila

    2006-01-01

    We present a dynamic fault tree model of the benchmark propulsion system, and solve it using Galileo. Dynamic fault trees (DFT) extend traditional static fault trees with special gates to model spares and other sequence dependencies. Galileo solves DFT models using a judicious combination of automatically generated Markov and Binary Decision Diagram models. Galileo easily handles the complexities exhibited by the benchmark problem. In particular, Galileo is designed to model phased mission systems.

  15. Dynamics of everyday life: rigorous modular modeling in neurobiology based on Bloch's dynamical theorem.

    PubMed

    McCollum, Gin; Roberts, Patrick D

    2004-12-01

    Natural, everyday sensorimotor behaviors, such as rising from sitting, typically have an intrinsic organization of several levels of analysis. Taking this intrinsic organization as key to understanding neural dynamics is neither a top-down nor a bottom-up approach, but rather a meshing of multiple centers and levels of analysis. Motor control requires body dynamics that are consistent with physical dynamics, besides the more microscopic levels of neural dynamics. The dynamics of separate movements have been investigated as if the ends can be capped off, separated from the rest of the individual's life. Is this dynamically correct? Even chaotic behavior is deterministic. However, the mathematics of nonlinear oscillations is not all of dynamics. This paper relates Bloch's dynamical theorem to the modular, conditional approach to sensorimotor and other neural functioning. Bloch's dynamical theorem lays a foundation for the piecewise study of structurally accurate dynamics in theoretical neurobiology. Piecewise studies can be used as a modeling option complementary to the methods of nonlinear oscillator dynamics. By applying Bloch's theorem, dynamics of movements analyzed piecewise can be extended into a smooth flow on any manifold, either as a whole or conditionally. Conditional dynamics makes dynamical modeling options explicit, often depending on what variables the organism can control, and allows one to take different modeling options at different junctures in analyzing the same phenomenon. For example, this approach allows the study of complex motor control problems to be reduced to modular constructions using singularities and flow lines. Dynamical contingencies are expressed using the mathematics of ordered structures. This paper presents Bloch's dynamical theorem and its relevance to model construction in theoretical neurobiology. Specific examples, integrated into physiological and behavioral context, are cited from the literature.

  16. Analysing the temporal dynamics of model performance for hydrological models

    NASA Astrophysics Data System (ADS)

    Reusser, D. E.; Blume, T.; Schaefli, B.; Zehe, E.

    2009-07-01

    The temporal dynamics of hydrological model performance gives insights into errors that cannot be obtained from global performance measures assigning a single number to the fit of a simulated time series to an observed reference series. These errors can include errors in data, model parameters, or model structure. Dealing with a set of performance measures evaluated at a high temporal resolution implies analyzing and interpreting a high dimensional data set. This paper presents a method for such a hydrological model performance assessment with a high temporal resolution and illustrates its application for two very different rainfall-runoff modeling case studies. The first is the Wilde Weisseritz case study, a headwater catchment in the eastern Ore Mountains, simulated with the conceptual model WaSiM-ETH. The second is the Malalcahuello case study, a headwater catchment in the Chilean Andes, simulated with the physics-based model Catflow. The proposed time-resolved performance assessment starts with the computation of a large set of classically used performance measures for a moving window. The key of the developed approach is a data-reduction method based on self-organizing maps (SOMs) and cluster analysis to classify the high-dimensional performance matrix. Synthetic peak errors are used to interpret the resulting error classes. The final outcome of the proposed method is a time series of the occurrence of dominant error types. For the two case studies analyzed here, 6 such error types have been identified. They show clear temporal patterns, which can lead to the identification of model structural errors.

  17. Analysing the temporal dynamics of model performance for hydrological models

    NASA Astrophysics Data System (ADS)

    Reusser, D. E.; Blume, T.; Schaefli, B.; Zehe, E.

    2008-11-01

    The temporal dynamics of hydrological model performance gives insights into errors that cannot be obtained from global performance measures assigning a single number to the fit of a simulated time series to an observed reference series. These errors can include errors in data, model parameters, or model structure. Dealing with a set of performance measures evaluated at a high temporal resolution implies analyzing and interpreting a high dimensional data set. This paper presents a method for such a hydrological model performance assessment with a high temporal resolution and illustrates its application for two very different rainfall-runoff modeling case studies. The first is the Wilde Weisseritz case study, a headwater catchment in the eastern Ore Mountains, simulated with the conceptual model WaSiM-ETH. The second is the Malalcahuello case study, a headwater catchment in the Chilean Andes, simulated with the physics-based model Catflow. The proposed time-resolved performance assessment starts with the computation of a large set of classically used performance measures for a moving window. The key of the developed approach is a data-reduction method based on self-organizing maps (SOMs) and cluster analysis to classify the high-dimensional performance matrix. Synthetic peak errors are used to interpret the resulting error classes. The final outcome of the proposed method is a time series of the occurrence of dominant error types. For the two case studies analyzed here, 6 such error types have been identified. They show clear temporal patterns which can lead to the identification of model structural errors.

  18. Modeling Statistical and Dynamic Features of Earthquakes

    NASA Astrophysics Data System (ADS)

    Rydelek, P. A.; Suyehiro, K.; Sacks, S. I.; Smith, D. E.; Takanami, T.; Hatano, T.

    2015-12-01

    The cellular automaton earthquake model by Sacks and Rydelek (1995) is extended to explain spatio-temporal change in seismicity with the regional tectonic stress buildup. Our approach is to apply a simple Coulomb failure law to our model space of discrete cells, which successfully reproduces empirical laws (e.g. Gutenberg-Richter law) and dynamic failure characteristics (e.g. stress drop vs. magnitude and asperities) of earthquakes. Once the stress condition supersedes the Coulomb threshold on a discrete cell, its accumulated stress is transferred to only neighboring cells, which cascades to more neighboring cells to create various size ruptures. A fundamental point here is the cellular view of the continuous earth. We suggest the cell size varies regionally with the maturity of the faults of the region. Seismic gaps (e.g. Mogi, 1979) and changes in seismicity such as indicated by b-values have been known but poorly understood. There have been reports of magnitude dependent seismic quiescence before large event at plate boundaries and intraplate (Smith et al., 2013). Recently, decreases in b-value for large earthquakes have been reported (Nanjo et al., 2012) as anticipated from lab experiments (Mogi, 1963). Our model reproduces the b-value decrease towards eventual large earthquake (increasing tectonic stress and its heterogeneous distribution). We succeeded in reproducing the cut-off of larger events above some threshold magnitude (M3-4) by slightly increasing the Coulomb failure level for only 2 % or more of the highly stressed cells. This is equivalent to reducing the pore pressure in these distributed cells. We are working on the model to introduce the recovery of pore pressure incorporating the observed orders of magnitude higher permeability fault zones than the surrounding rock (Lockner, 2009) allowing for a large earthquake to be generated. Our interpretation requires interactions of pores and fluids. We suggest heterogeneously distributed patches hardened

  19. Protoplaneary Dynamics Uncovered through Synthetic Spectral Modeling

    NASA Astrophysics Data System (ADS)

    Kronberg, Martin

    2010-01-01

    One of the key problems in planetary formation research is to determine the properties and dynamics of protoplaneary accretion disks where all planetary formation occurs. An increasingly useful probe into these systems is near infrared spectroscopy of ro-vibrational CO emission. The goal of the study is to develop techniques that utilize synthetic spectra generated via a modeling algorithm fitted to actual spectral data gathered from protoplanetary systems to determine specific properties of the system. We currently have a working algorithm which generates synthetic spectra based upon a number of degenerate parameters. In order to generate the best fit given the degenerate nature of the parameters we are developing a Monte Carlo algorithm that will determine local as well as absolute minima in a ten dimensional surface plot. Once this is completed we will utilize two CONDOR clusters to generate fits for hundreds of known protoplanetary systems.The result will be the largest, most descriptive database of protoplanetary systems, an essential tool for planetary and stellar researchers. This project was funded by a partnership between the National Science Foundation (NSF AST-0552798), Research Experiences for Undergraduates (REU), and the Department of Defense (DoD) ASSURE (Awards to Stimulate and Support Undergraduate Research Experiences) programs.

  20. Nonlinear dynamics of avian influenza epidemic models.

    PubMed

    Liu, Sanhong; Ruan, Shigui; Zhang, Xinan

    2017-01-01

    Avian influenza is a zoonotic disease caused by the transmission of the avian influenza A virus, such as H5N1 and H7N9, from birds to humans. The avian influenza A H5N1 virus has caused more than 500 human infections worldwide with nearly a 60% death rate since it was first reported in Hong Kong in 1997. The four outbreaks of the avian influenza A H7N9 in China from March 2013 to June 2016 have resulted in 580 human cases including 202 deaths with a death rate of nearly 35%. In this paper, we construct two avian influenza bird-to-human transmission models with different growth laws of the avian population, one with logistic growth and the other with Allee effect, and analyze their dynamical behavior. We obtain a threshold value for the prevalence of avian influenza and investigate the local or global asymptotical stability of each equilibrium of these systems by using linear analysis technique or combining Liapunov function method and LaSalle's invariance principle, respectively. Moreover, we give necessary and sufficient conditions for the occurrence of periodic solutions in the avian influenza system with Allee effect of the avian population. Numerical simulations are also presented to illustrate the theoretical results.

  1. Dynamical Properties of Polymers: Computational Modeling

    SciTech Connect

    CURRO, JOHN G.; ROTTACH, DANA; MCCOY, JOHN D.

    2001-01-01

    The free volume distribution has been a qualitatively useful concept by which dynamical properties of polymers, such as the penetrant diffusion constant, viscosity, and glass transition temperature, could be correlated with static properties. In an effort to put this on a more quantitative footing, we define the free volume distribution as the probability of finding a spherical cavity of radius R in a polymer liquid. This is identical to the insertion probability in scaled particle theory, and is related to the chemical potential of hard spheres of radius R in a polymer in the Henry's law limit. We used the Polymer Reference Interaction Site Model (PRISM) theory to compute the free volume distribution of semiflexible polymer melts as a function of chain stiffness. Good agreement was found with the corresponding free volume distributions obtained from MD simulations. Surprisingly, the free volume distribution was insensitive to the chain stiffness, even though the single chain structure and the intermolecular pair correlation functions showed a strong dependence on chain stiffness. We also calculated the free volume distributions of polyisobutylene (PIB) and polyethylene (PE) at 298K and at elevated temperatures from PRISM theory. We found that PIB has more of its free volume distributed in smaller size cavities than for PE at the same temperature.

  2. An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics

    PubMed Central

    Beaudouin, Rémy; Goussen, Benoit; Piccini, Benjamin; Augustine, Starrlight; Devillers, James; Brion, François; Péry, Alexandre R. R.

    2015-01-01

    Developing population dynamics models for zebrafish is crucial in order to extrapolate from toxicity data measured at the organism level to biological levels relevant to support and enhance ecological risk assessment. To achieve this, a dynamic energy budget for individual zebrafish (DEB model) was coupled to an individual based model of zebrafish population dynamics (IBM model). Next, we fitted the DEB model to new experimental data on zebrafish growth and reproduction thus improving existing models. We further analysed the DEB-model and DEB-IBM using a sensitivity analysis. Finally, the predictions of the DEB-IBM were compared to existing observations on natural zebrafish populations and the predicted population dynamics are realistic. While our zebrafish DEB-IBM model can still be improved by acquiring new experimental data on the most uncertain processes (e.g. survival or feeding), it can already serve to predict the impact of compounds at the population level. PMID:25938409

  3. Dynamical coarse grained models with realistic time dependence

    NASA Astrophysics Data System (ADS)

    Andersen, Hans

    2015-03-01

    Coarse grained (CG) models of molecular systems, with fewer mechanical degrees of freedom than an all-atom model, are used extensively in chemical physics. It is generally accepted that a coarse grained model that accurately describes equilibrium structural properties (as a result of having a well constructed CG potential energy function) does not necessarily exhibit appropriate dynamical behavior when simulated using conservative Hamiltonian dynamics for the CG degrees of freedom on the CG potential energy surface. Attempts to develop accurate CG dynamic models usually focus on replacing Hamiltonian motion by stochastic but Markovian dynamics on that surface, such as Langevin or Brownian dynamics. However, depending on the nature of the system and the extent of the coarse graining, a Markovian dynamics for the CG degrees of freedom may not be appropriate. We consider the problem of constructing dynamic CG models within the context of the Multi-Scale Coarse Graining (MS-CG) method of Voth and coworkers. We propose a method of converting an MS-CG model into a dynamic CG model by adding degrees of freedom to it in the form of a small number of fictitious particles that interact with the CG degrees of freedom in simple ways and that are subject to Langevin forces. The dynamic models are members of a class of nonlinear systems interacting with special heat baths that was studied by Zwanzig [R. Zwanzig, J. Stat. Phys. 9, 215 (1973)]. The dynamic models generate a non-Markovian dynamics for the CG degrees of freedom, but they can be easily simulated using standard molecular dynamics simulation programs. We present tests of this method on a series of simple examples that demonstrate that the method provides realistic dynamical CG models that have non-Markovian or close to Markovian behavior that is consistent with the actual dynamical behavior of the all-atom system used to construct the CG model. The dynamic CG models have computational requirements that are similar to

  4. A review of dynamics modelling of friction wedge suspensions

    NASA Astrophysics Data System (ADS)

    Wu, Qing; Cole, Colin; Spiryagin, Maksym; Sun, Yan Quan

    2014-11-01

    Three-piece bogies with friction wedge suspensions are the most widely used bogies in heavy haul trains. Fiction wedge suspensions play a key role in these wagon systems. This article reviews current techniques in dynamic modelling of friction wedge suspension with various motivations: to improve dynamic models of friction wedge suspensions so as to improve general wagon dynamics simulations; to seek better friction wedge suspension models for wagon stability assessments in complex train systems; to improve the modelling of other friction devices, such as friction draft gear. Relevant theories and friction wedge suspension models developed by using commercial simulation packages and in-house simulation packages are reviewed.

  5. An integrated dynamic model of a flexible wind turbine

    NASA Astrophysics Data System (ADS)

    Bongers, Peter M. M.; Bierbooms, Wim A. A.; Dijkstra, Sjoerd; Vanholten, Theo

    1990-06-01

    A model to study the dynamic behavior of flexible wind turbines was developed. The different subsystems of the wind turbine are individually modeled with about the same degree of accuracy. The aerodynamic part describes wind shear, gravity effects, unsteady effects, and dynamic inflow. The rotor blades are provided with degrees of freedom in lag and flap directions. The tower construction is modeled including the first bending mode. The first torsional mode of the transmission is included in the model. The model of synchronous generator with dc link consists of a nonlinear fourth order model, including saturation effects. The different models of the subsystems are coupled into one integrated dynamic model which is implemented as simulation code in the DUWECS (Delf University Wind Energy Converter Simulation Package) program. The DUWECS program is developed in such a manner that it is an easy to handle tool for the study of the dynamic features of wind turbine systems.

  6. Dynamical Widom-Rowlinson Model and Its Mesoscopic Limit

    NASA Astrophysics Data System (ADS)

    Finkelshtein, Dmitri; Kondratiev, Yuri; Kutoviy, Oleksandr; Oliveira, Maria João

    2015-01-01

    We consider the non-equilibrium dynamics for the Widom-Rowlinson model (without hard-core) in the continuum. The Lebowitz-Penrose-type scaling of the dynamics is studied and the system of the corresponding kinetic equations is derived. In the space-homogeneous case, the equilibrium points of this system are described. Their structure corresponds to the dynamical phase transition in the model. The bifurcation of the system is shown.

  7. Modeling Nanocomposites for Molecular Dynamics (MD) Simulations

    DTIC Science & Technology

    2015-01-01

    Maximum 200 Words) The minimum energy configuration for Molecular Dynamics (MD) simulations is found for a carbon nanotube (CNT)/polymer...Carbon Nanotubes (CNTs), Molecular Dynamics Simulations 15. NUMBER OF PAGES 18 16. PRICE CODE 17. SECURITY CLASSIFICATION OF REPORT...fiber composites have shown success in improving mechanical properties. Carbon nanotube (CNT)-based nanocomposites have been studied for

  8. Estimation of Spatial Dynamic Nonparametric Durbin Models with Fixed Effects

    ERIC Educational Resources Information Center

    Qian, Minghui; Hu, Ridong; Chen, Jianwei

    2016-01-01

    Spatial panel data models have been widely studied and applied in both scientific and social science disciplines, especially in the analysis of spatial influence. In this paper, we consider the spatial dynamic nonparametric Durbin model (SDNDM) with fixed effects, which takes the nonlinear factors into account base on the spatial dynamic panel…

  9. A Dynamic Systems Model of Cognitive and Language Growth.

    ERIC Educational Resources Information Center

    van Geert, Paul

    1991-01-01

    A conceptual framework of cognitive growth is sketched and a mathematical model of cognitive growth is presented with the conclusion that the most plausible model is a model of logistic growth with delayed feedback. The model is transformed into a dynamic systems model based on the logistic-growth equation. (SLD)

  10. Modelling Seasonal Carbon Dynamics on Fen Peatlands

    NASA Astrophysics Data System (ADS)

    Giebels, Michael; Beyer, Madlen; Augustin, Jürgen; Roppel, Mario; Juszczak, Radoszlav; Serba, Tomasz

    2010-05-01

    In Germany more than 99 % of fens have lost their carbon and nutrient sink function due to heavy drainage and agricultural land use especially during the last decades and thus resulted in compression and heavy peat loss (CHARMAN 2002; JOOSTEN & CLARKE 2002; SUCCOW & JOOSTEN 2001; AUGUSTIN et al. 1996; KUNTZE 1993). Therefore fen peatlands play an important part (4-5 %) in the national anthropogenic trace gas budget. But only a small part of drained and agricultural used fens in NE Germany can be restored. Knowledge of the influence of land use to trace gas exchange is important for mitigation of the climate impact of the anthropogenic peatland use. We study carbon exchanges between soil and atmosphere on several fen peatland use areas at different sites in NE-Germany. Our research covers peatlands of supposed strongly climate forcing land use (cornfield and intensive pasture) and of probably less forcing, alternative types (meadow and extensive pasture) as well as rewetted (formerly drained) areas and near-natural sites like a low-degraded fen and a wetted alder woodland. We measured trace gas fluxes with manual and automatic chambers in periodic routines since spring 2007. The used chamber technique bases on DROESLER (2005). In total we now do research at 22 sites situated in 5 different locations covering agricultural, varying states of rewetted and near-natural treatments. We present results of at least 2 years of measurements on our site of varying types of agricultural land use. There we found significant differences in the annual carbon balances depending on the genesis of the observed sites and the seasonal dynamics. Annual balances were constructed by applying single respiration and photosynthesis CO2 models for each measurement campaign. These models were based on LLOYD-TAYLOR (1994) and Michaelis-Menten-Kinetics respectively. Crosswise comparison of different site treatments combined with the seasonal environmental observations give good hints for the

  11. Dynamic Model Validation with Governor Deadband on the Eastern Interconnection

    SciTech Connect

    Kou, Gefei; Hadley, Stanton W; Liu, Yilu

    2014-04-01

    This report documents the efforts to perform dynamic model validation on the Eastern Interconnection (EI) by modeling governor deadband. An on-peak EI dynamic model is modified to represent governor deadband characteristics. Simulation results are compared with synchrophasor measurements collected by the Frequency Monitoring Network (FNET/GridEye). The comparison shows that by modeling governor deadband the simulated frequency response can closely align with the actual system response.

  12. Multibody dynamics model building using graphical interfaces

    NASA Technical Reports Server (NTRS)

    Macala, Glenn A.

    1989-01-01

    In recent years, the extremely laborious task of manually deriving equations of motion for the simulation of multibody spacecraft dynamics has largely been eliminated. Instead, the dynamicist now works with commonly available general purpose dynamics simulation programs which generate the equations of motion either explicitly or implicitly via computer codes. The user interface to these programs has predominantly been via input data files, each with its own required format and peculiarities, causing errors and frustrations during program setup. Recent progress in a more natural method of data input for dynamics programs: the graphical interface, is described.

  13. A tribo-dynamic model of a spur gear pair

    NASA Astrophysics Data System (ADS)

    Li, S.; Kahraman, A.

    2013-09-01

    In this study, a tribo-dynamics model for spur gear pairs is proposed. The model couples a mixed elastohydrodynamic lubrication model of a spur gear pair with a transverse-torsional dynamic model. The lubrication model provides the dynamic model with friction forces and moments that couple the vibrations of the gears along the off-line-of-action direction to other gear vibrations. In addition, it predicts damping coefficient at the gear mesh in a physics-based manner from the energy loss associated with viscous shearing across the fluid film. In return, the dynamic model predicts the dynamic tooth forces and surface velocities to be used in the lubrication model. An iterative computational scheme is proposed to implement the lubrication and dynamics models simultaneously to couple tribological and dynamic behaviors of a spur gear pair fully. An example gear pair is analyzed using the proposed model to demonstrate this two-way relationship and quantify the impact of operating conditions, surface roughness and lubrication characteristics on the tribo-dynamics response. Dynamic gear mesh tooth forces predicted by the dynamic model are used in the EHL model as the loading. Surface velocity fluctuations due to gear vibrations are included in the EHL formulation in the definition of rolling and sliding velocities as well as non-Newtonian flow coefficients. A physics-based, time-varying, viscous gear mesh damping is defined from the EHL formulations to be used in the dynamic model along the OLOA direction. Since the EHL model considers rough surfaces, the roughness effects in addition to the operating speed, load and temperature effects are all included in the gear mesh damping. Time-varying friction forces acting in the OLOA direction and friction moments acting in torsional direction are computed from the EHL model to be used in the dynamic model to couple LOA and OLOA motions properly. Effects of surface roughness and operating speed, load and temperature conditions on

  14. Modeling Dynamic Fracture of Cryogenic Pellets

    SciTech Connect

    Parks, Paul

    2016-06-30

    This work is part of an investigation with the long-range objective of predicting the size distribution function and velocity dispersion of shattered pellet fragments after a large cryogenic pellet impacts a solid surface at high velocity. The study is vitally important for the shattered pellet injection (SPI) technique, one of the leading technologies being implemented at ORNL for the mitigation of disruption damage on current tokamaks and ITER. The report contains three parts that are somewhat interwoven. In Part I we formulated a self-similar model for the expansion dynamics and velocity dispersion of the debris cloud following pellet impact against a thick (rigid) target plate. Also presented in Part I is an analytical fracture model that predicts the nominal or mean size of the fragments in the debris cloud and agrees well with known SPI data. The aim of Part II is to gain an understanding of the pellet fracturing process when a pellet is shattered inside a miter tube with a sharp bend. Because miter tubes have a thin stainless steel (SS) wall a permanent deformation (dishing) of the wall is produced at the site of the impact. A review of the literature indicates that most projectile impact on thin plates are those for which the target is deformed and the projectile is perfectly rigid. Such impacts result in “projectile embedding” where the projectile speed is reduced to zero during the interaction so that all the kinetic energy (KE) of the projectile goes into the energy stored in plastic deformation. Much of the literature deals with perforation of the target. The problem here is quite different; the softer pellet easily undergoes complete material failure causing only a small transfer of KE to stored energy of wall deformation. For the real miter tube, we derived a strain energy function for the wall deflection using a non-linear (plastic) stress-strain relation for 304 SS. Using a dishing profile identical to the linear Kirchkoff-Love profile (for lack

  15. The Rigid-Flexible System Dynamics Model of Highline Cable

    NASA Astrophysics Data System (ADS)

    Xing, Daoqi; Li, Nan; Zhang, Shiyun

    The paper researches rigid flexible system dynamics model of the rope, and used it to simulate sealift Highline based on the multi-body dynamics theory. Meanwhile the paper simulated to the sea dry cargo replenishment of transverse process, then gain the conclusion that the rigid flexible dynamic model get in the paper is more close to the Caucasus, and the dynamic calculation results closer to the actual situation, through the analysis of simulation results, and combined with the actual situation in the Caucasus the structure of overhead cable.

  16. Modelling and Analysis of a New Piezoelectric Dynamic Balance Regulator

    PubMed Central

    Du, Zhe; Mei, Xue-Song; Xu, Mu-Xun

    2012-01-01

    In this paper, a new piezoelectric dynamic balance regulator, which can be used in motorised spindle systems, is presented. The dynamic balancing adjustment mechanism is driven by an in-plane bending vibration from an annular piezoelectric stator excited by a high-frequency sinusoidal input voltage. This device has different construction, characteristics and operating principles than a conventional balance regulator. In this work, a dynamic model of the regulator is first developed using a detailed analytical method. Thereafter, MATLAB is employed to numerically simulate the relations between the dominant parameters and the characteristics of the regulator based on thedynamic model. Finally, experimental measurements are used to certify the validity of the dynamic model. Consequently, the mathematical model presented and analysed in this paper can be used as a tool for optimising the design of a piezoelectric dynamic balance regulator during steady state operation. PMID:23202182

  17. Developing a Dynamic Pharmacophore Model for HIV-1 Integrase

    SciTech Connect

    Carlson, Heather A.; Masukawa, Keven M.; Rubins, Kathleen; Bushman, Frederic; Jorgensen, William L.; Lins, Roberto; Briggs, James; Mccammon, Andy

    2000-05-11

    We present the first receptor-based pharmacophore model for HIV-1 integrase. The development of ''dynamic'' pharmacophore models is a new method that accounts for the inherent flexibility of the active site and aims to reduce the entropic penalties associated with binding a ligand. Furthermore, this new drug discovery method overcomes the limitation of an incomplete crystal structure of the target protein. A molecular dynamics (MD) simulation describes the flexibility of the uncomplexed protein. Many conformational models of the protein are saved from the MD simulations and used in a series of multi-unit search for interacting conformers (MUSIC) simulations. MUSIC is a multiple-copy minimization method, available in the BOSS program; it is used to determine binding regions for probe molecules containing functional groups that complement the active site. All protein conformations from the MD are overlaid, and conserved binding regions for the probe molecules are identified. Those conserved binding regions define the dynamic pharmacophore model. Here, the dynamic model is compared to known inhibitors of the integrase as well as a three-point, ligand-based pharmacophore model from the literature. Also, a ''static'' pharmacophore model was determined in the standard fashion, using a single crystal structure. Inhibitors thought to bind in the active site of HIV-1 integrase fit the dynamic model but not the static model. Finally, we have identified a set of compounds from the Available Chemicals Directory that fit the dynamic pharmacophore model, and experimental testing of the compounds has confirmed several new inhibitors.

  18. Comparisons of Four Methods for Estimating a Dynamic Factor Model

    ERIC Educational Resources Information Center

    Zhang, Zhiyong; Hamaker, Ellen L.; Nesselroade, John R.

    2008-01-01

    Four methods for estimating a dynamic factor model, the direct autoregressive factor score (DAFS) model, are evaluated and compared. The first method estimates the DAFS model using a Kalman filter algorithm based on its state space model representation. The second one employs the maximum likelihood estimation method based on the construction of a…

  19. Model based control of dynamic atomic force microscope

    NASA Astrophysics Data System (ADS)

    Lee, Chibum; Salapaka, Srinivasa M.

    2015-04-01

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H∞ control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments.

  20. Model based control of dynamic atomic force microscope.

    PubMed

    Lee, Chibum; Salapaka, Srinivasa M

    2015-04-01

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H(∞) control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments.

  1. Model based control of dynamic atomic force microscope

    SciTech Connect

    Lee, Chibum; Salapaka, Srinivasa M.

    2015-04-15

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H{sub ∞} control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments.

  2. A simplified dynamic model of the T700 turboshaft engine

    NASA Technical Reports Server (NTRS)

    Duyar, Ahmet; Gu, Zhen; Litt, Jonathan S.

    1992-01-01

    A simplified open-loop dynamic model of the T700 turboshaft engine, valid within the normal operating range of the engine, is developed. This model is obtained by linking linear state space models obtained at different engine operating points. Each linear model is developed from a detailed nonlinear engine simulation using a multivariable system identification and realization method. The simplified model may be used with a model-based real time diagnostic scheme for fault detection and diagnostics, as well as for open loop engine dynamics studies and closed loop control analysis utilizing a user generated control law.

  3. Exploiting Non-sequence Data in Dynamic Model Learning

    DTIC Science & Technology

    2013-10-01

    dynamic process of interest. For example, the Sloan Digital Sky Survey (SDSS)1 has collected images of millions of celestial objects, each of which may...function of Z and hence Z. Since we assume the true dynamics to be smooth, a natural way to reconstruct a temporal ordering would be to solve the...program (3.42) better captures the dynamic nature of the data. • The initial models learnt from ordered cluster centers already perform quite well

  4. Stochastic models of cover class dynamics. [remote sensing of vegetation

    NASA Technical Reports Server (NTRS)

    Barringer, T. H.; Robinson, V. B.

    1981-01-01

    Investigations related to satellite remote sensing of vegetation have been concerned with questions of signature identification and extension, cover inventory accuracy, and change detection and monitoring. Attention is given to models of ecological succession, present directions in successional modeling and analysis, nondynamic spatial models, issues in the analysis of spatial data, and aspects of spatial modeling. Issues in time-series analysis are considered along with dynamic spatial models, and problems of model specification and identification.

  5. Subcycled dynamics in the Spectral Community Atmosphere Model, version 4

    SciTech Connect

    Taylor, Mark; Evans, Katherine J; Hack, James J; Worley, Patrick H

    2010-01-01

    To gain computational efficiency, a split explicit time integration scheme has been implemented in the CAM spectral Eulerian dynamical core. In this scheme, already present in other dynamical core options within the Community Atmosphere Model, version 4 (CAM), the fluid dynamics portion of the model is subcycled to allow a longer time step for the parameterization schemes. The physics parameterization of CAM is not subject to the stability restrictions of the fluid dynamics, and thus finer spatial resolutions of the model do not require the physics time step to be reduced. A brief outline of the subcycling algorithm implementation and resulting model efficiency improvement is presented. A discussion regarding the effect of the climate statistics derived from short model runs is provided.

  6. Mathematical modeling of microtubule dynamics: insights into physiology and disease.

    PubMed

    Buxton, Gavin A; Siedlak, Sandra L; Perry, George; Smith, Mark A

    2010-12-01

    Computer models of microtubule dynamics have provided the basis for many of the theories on the cellular mechanics of the microtubules, their polymerization kinetics, and the diffusion of tubulin and tau. In the three-dimensional model presented here, we include the effects of tau concentration and the hydrolysis of GTP-tubulin to GDP-tubulin and observe the emergence of microtubule dynamic instability. This integrated approach simulates the essential physics of microtubule dynamics in a cellular environment. The model captures the structure of the microtubules as they undergo steady state dynamic instabilities in this simplified geometry, and also yields the average number, length, and cap size of the microtubules. The model achieves realistic geometries and simulates cellular structures found in degenerating neurons in disease states such as Alzheimer disease. Further, this model can be used to simulate microtubule changes following the addition of antimitotic drugs which have recently attracted attention as chemotherapeutic agents.

  7. Generic solar photovoltaic system dynamic simulation model specification

    SciTech Connect

    Ellis, Abraham; Behnke, Michael Robert; Elliott, Ryan Thomas

    2013-10-01

    This document is intended to serve as a specification for generic solar photovoltaic (PV) system positive-sequence dynamic models to be implemented by software developers and approved by the WECC MVWG for use in bulk system dynamic simulations in accordance with NERC MOD standards. Two specific dynamic models are included in the scope of this document. The first, a Central Station PV System model, is intended to capture the most important dynamic characteristics of large scale (> 10 MW) PV systems with a central Point of Interconnection (POI) at the transmission level. The second, a Distributed PV System model, is intended to represent an aggregation of smaller, distribution-connected systems that comprise a portion of a composite load that might be modeled at a transmission load bus.

  8. The AFDD International Dynamic Stall Workshop on Correlation of Dynamic Stall Models with 3-D Dynamic Stall Data

    NASA Technical Reports Server (NTRS)

    Tan, C. M.; Carr, L. W.

    1996-01-01

    A variety of empirical and computational fluid dynamics two-dimensional (2-D) dynamic stall models were compared to recently obtained three-dimensional (3-D) dynamic stall data in a workshop on modeling of 3-D dynamic stall of an unswept, rectangular wing, of aspect ratio 10. Dynamic stall test data both below and above the static stall angle-of-attack were supplied to the participants, along with a 'blind' case where only the test conditions were supplied in advance, with results being compared to experimental data at the workshop itself. Detailed graphical comparisons are presented in the report, which also includes discussion of the methods and the results. The primary conclusion of the workshop was that the 3-D effects of dynamic stall on the oscillating wing studied in the workshop can be reasonably reproduced by existing semi-empirical models once 2-D dynamic stall data have been obtained. The participants also emphasized the need for improved quantification of 2-D dynamic stall.

  9. Dynamic Evolution Model Based on Social Network Services

    NASA Astrophysics Data System (ADS)

    Xiong, Xi; Gou, Zhi-Jian; Zhang, Shi-Bin; Zhao, Wen

    2013-11-01

    Based on the analysis of evolutionary characteristics of public opinion in social networking services (SNS), in the paper we propose a dynamic evolution model, in which opinions are coupled with topology. This model shows the clustering phenomenon of opinions in dynamic network evolution. The simulation results show that the model can fit the data from a social network site. The dynamic evolution of networks accelerates the opinion, separation and aggregation. The scale and the number of clusters are influenced by confidence limit and rewiring probability. Dynamic changes of the topology reduce the number of isolated nodes, while the increased confidence limit allows nodes to communicate more sufficiently. The two effects make the distribution of opinion more neutral. The dynamic evolution of networks generates central clusters with high connectivity and high betweenness, which make it difficult to control public opinions in SNS.

  10. Dynamic wake distortion model for helicopter maneuvering flight

    NASA Astrophysics Data System (ADS)

    Zhao, Jinggen

    A new rotor dynamic wake distortion model, which can be used to account for the rotor transient wake distortion effect on inflow across the rotor disk during helicopter maneuvering and transitional flight in both hover and forward flight conditions, is developed. The dynamic growths of the induced inflow perturbation across rotor disk during different transient maneuvers, such as a step pitch or roll rate, a step climb rate and a step change of advance ratio are investigated by using a dynamic vortex tube analysis. Based on the vortex tube results, a rotor dynamic wake distortion model, which is expressed in terms of a set of ordinary differential equations, with rotor longitudinal and lateral wake curvatures, wake skew and wake spacing as states, is developed. Also, both the Pitt-Peters dynamic inflow model and the Peters-He finite state inflow model for axial or forward flight are augmented to account for rotor dynamic wake distortion effect during helicopter maneuvering flight. To model the aerodynamic interaction among main rotor, tail rotor and empennage caused by rotor wake curvature effect during helicopter maneuvering flight, a reduced order model based on a vortex tube analysis is developed. Both the augmented Pitt-Peters dynamic inflow model and the augmented Peters-He finite state inflow model, combined with the developed dynamic wake distortion model, together with the interaction model are implemented in a generic helicopter simulation program of UH-60 Black Hawk helicopter and the simulated vehicle control responses in both time domain and frequency domain are compared with flight test data of a UH-60 Black Hawk helicopter in both hover and low speed forward flight conditions.

  11. Exploring the Components of Dynamic Modeling Techniques

    ERIC Educational Resources Information Center

    Turnitsa, Charles Daniel

    2012-01-01

    Upon defining the terms modeling and simulation, it becomes apparent that there is a wide variety of different models, using different techniques, appropriate for different levels of representation for any one system to be modeled. Selecting an appropriate conceptual modeling technique from those available is an open question for the practitioner.…

  12. Modelling emergent patterns of dynamic desert ecosystems

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In many desert ecosystems vegetation is both patchy and dynamic: vegetated areas are interspersed with patches of bare ground, and both the positioning and the species composition of the vegetated areas exhibit change through time. These characteristics lead to the emergence of multi-scale patterns ...

  13. Modeling Academic Education Processes by Dynamic Storyboarding

    ERIC Educational Resources Information Center

    Sakurai, Yoshitaka; Dohi, Shinichi; Tsuruta, Setsuo; Knauf, Rainer

    2009-01-01

    In high-level education such as university studies, there is a flexible but complicated system of subject offerings and registration rules such as prerequisite subjects. Those offerings, connected with registration rules, should be matched to the students' learning needs and desires, which change dynamically. Students need assistance in such a…

  14. Biomolecular Modeling in a Process Dynamics and Control Course

    ERIC Educational Resources Information Center

    Gray, Jeffrey J.

    2006-01-01

    I present modifications to the traditional course entitled, "Process dynamics and control," which I renamed "Modeling, dynamics, and control of chemical and biological processes." Additions include the central dogma of biology, pharmacokinetic systems, population balances, control of gene transcription, and large­-scale…

  15. Modelling the Structure and Dynamics of Biological Pathways

    PubMed Central

    O’Hara, Laura; Livigni, Alessandra; Chen, Sz-Hau; Raza, Sobia; Digard, Paul; Smith, Lee B.; Freeman, Tom C.

    2016-01-01

    There is a need for formalised diagrams that both summarise current biological pathway knowledge and support modelling approaches that explain and predict their behaviour. Here, we present a new, freely available modelling framework that includes a biologist-friendly pathway modelling language (mEPN), a simple but sophisticated method to support model parameterisation using available biological information; a stochastic flow algorithm that simulates the dynamics of pathway activity; and a 3-D visualisation engine that aids understanding of the complexities of a system’s dynamics. We present example pathway models that illustrate of the power of approach to depict a diverse range of systems. PMID:27509052

  16. A 4096 atom model of amorphous silicon: Structure and dynamics

    NASA Astrophysics Data System (ADS)

    Feldman, Joseph L.; Bickham, Scott R.; Davidson, Brian N.; Wooten, Frederick

    1997-03-01

    We present structural and lattice dynamical information for a 4096 atom model of amorphous silicon. The structural model was obtained, similarly to previously published smaller models, using periodic boundary conditions, the Wooten-Winer-Weaire bond-switching algorithm, and the Broughton-Li relaxation with respect to the Stillinger-Weber potential. The structure is dynamically stable and there is no evidence in the radial distribution function of medium range order. For examining this large model, we use a 1000 processor Connection Machine to compute all the eigenvalues and eigenvectors exactly. The phonon density of states and inverse participation ratio are compared with results for related 216, 432 and 1000-atom models.

  17. Dynamic heat capacity of the east model and of a bead-spring polymer model.

    SciTech Connect

    McCoy, John Dwane; Brown, Jonathan R.; Adolf, Douglas Brian

    2011-10-01

    In this report we have presented a brief review of the glass transition and one means of characterizing glassy materials: linear and nonlinear thermodynamic oscillatory experiments to extract the dynamic heat capacity. We have applied these methods to the east model (a variation of the Ising model for glass forming systems) and a simple polymeric system via molecular dynamics simulation, and our results match what is seen in experiment. For the east model, since the dynamics are so simple, a mathematical model is developed that matches the simulated dynamics. For the polymeric system, since the system is a simulation, we can instantaneously 'quench' the system - removing all vibrational energy - to separate the vibrational dynamics from dynamics associated with particle rearrangements. This shows that the long-time glassy dynamics are due entirely to the particle rearrangements, i.e. basin jumping on the potential energy landscape. Finally, we present an extension of linear dynamic heat capacity to the nonlinear regime.

  18. Physiology-based gap model of forest dynamics

    SciTech Connect

    Friend, A.D.; Schugart, H.H.; Running, S.W.

    1993-01-01

    A computer model of forest growth and ecosystem processes is presented. The model, HYBRID, is derived from a forest gap model, an ecosystem process model, and a photosynthesis model. In HYBRID individual trees fix and respire carbon, and lose water daily; carbon partitioning occurs at the end of each year. HYBRID obviates many of the limitations of both gap models and ecosystem process models. The growth equations of gap models are replaced with functionally realistic equations and processes for carbon fixation and partitioning, resulting in a dynamic model in which competition and physiology play important roles.

  19. Equilibrium and Disequilibrium Dynamics in Cobweb Models with Time Delays

    NASA Astrophysics Data System (ADS)

    Gori, Luca; Guerrini, Luca; Sodini, Mauro

    2015-06-01

    This paper aims to study price dynamics in two different continuous time cobweb models with delays close to [Hommes, 1994]. In both cases, the stationary equilibrium may be not representative of the long-term dynamics of the model, since it is possible to observe endogenous and persistent fluctuations (supercritical Hopf bifurcations) even if a deterministic context without external shocks is considered. In the model in which markets are in equilibrium every time, we show that the existence of time delays in the expectations formation mechanism may cause chaotic dynamics similar to those obtained in [Hommes, 1994] in a discrete time context. From a mathematical point of view, we apply the Poincaré-Lindstedt perturbation method to study the local dynamic properties of the models. In addition, several numerical experiments are used to investigate global properties of the systems.

  20. Marginal Utility of Conditional Sensitivity Analyses for Dynamic Models

    EPA Science Inventory

    Background/Question/MethodsDynamic ecological processes may be influenced by many factors. Simulation models thatmimic these processes often have complex implementations with many parameters. Sensitivityanalyses are subsequently used to identify critical parameters whose uncertai...

  1. The Peyrard-Bishop-Dauxois Model of DNA Dynamics

    NASA Astrophysics Data System (ADS)

    Alexandrov, Boian; Bishop, Alan; Usheva, Anny; Rasmussen, Kim

    2008-03-01

    This presentation details aspects of the rapid development of the connection between the dynamics of double strand DNA, and experimental findings that has occurred in the recent years. We will approach this topic by demonstrating the Peyrard-Bishop-Dauxois model's ability to provide useful insight on several experimental observations. Specifically, we will discuss the melting behavior of various DNA sequences, and mechanical unzipping through dynamic force spectroscopy. Focusing on viral transcription initiation we will further show how the connection between DNA dynamics and DNA's biological functionality is becoming increasingly strong. Finally, we will describe a probable connection between DNA dynamics and the ability of repair proteins to recognize UV-radiation damages.

  2. A Dynamic Systems Theory Model of Visual Perception Development

    ERIC Educational Resources Information Center

    Coté, Carol A.

    2015-01-01

    This article presents a model for understanding the development of visual perception from a dynamic systems theory perspective. It contrasts to a hierarchical or reductionist model that is often found in the occupational therapy literature. In this proposed model vision and ocular motor abilities are not foundational to perception, they are seen…

  3. AN INDIVIDUAL-BASED MODEL OF COTTUS POPULATION DYNAMICS

    EPA Science Inventory

    We explored population dynamics of a southern Appalachian population of Cottus bairdi using a spatially-explicit, individual-based model. The model follows daily growth, mortality, and spawning of individuals as a function of flow and temperature. We modeled movement of juveniles...

  4. Particle hopping vs. fluid-dynamical models for traffic flow

    SciTech Connect

    Nagel, K.

    1995-12-31

    Although particle hopping models have been introduced into traffic science in the 19509, their systematic use has only started recently. Two reasons for this are, that they are advantageous on modem computers, and that recent theoretical developments allow analytical understanding of their properties and therefore more confidence for their use. In principle, particle hopping models fit between microscopic models for driving and fluiddynamical models for traffic flow. In this sense, they also help closing the conceptual gap between these two. This paper shows connections between particle hopping models and traffic flow theory. It shows that the hydrodynamical limits of certain particle hopping models correspond to the Lighthill-Whitham theory for traffic flow, and that only slightly more complex particle hopping models produce already the correct traffic jam dynamics, consistent with recent fluid-dynamical models for traffic flow. By doing so, this paper establishes that, on the macroscopic level, particle hopping models are at least as good as fluid-dynamical models. Yet, particle hopping models have at least two advantages over fluid-dynamical models: they straightforwardly allow microscopic simulations, and they include stochasticity.

  5. Dynamical Analysis in the Mathematical Modelling of Human Blood Glucose

    ERIC Educational Resources Information Center

    Bae, Saebyok; Kang, Byungmin

    2012-01-01

    We want to apply the geometrical method to a dynamical system of human blood glucose. Due to the educational importance of model building, we show a relatively general modelling process using observational facts. Next, two models of some concrete forms are analysed in the phase plane by means of linear stability, phase portrait and vector…

  6. Dynamic Modeling of Marine Bioluminescence and Night Time Leaving Radiance

    DTIC Science & Technology

    2012-09-30

    physical model is based on the Navy Coastal Ocean Model (NCOM), the biochemical model simulates dynamics of two sizes of phytoplankton, zooplankton ...layer of bioluminescent zooplankton were replaced by water masses advected from the northern coast of the bay with a relatively high presence of mostly

  7. Growth of Cognitive Abilities: Dynamic Models and Scaling.

    ERIC Educational Resources Information Center

    Eckstein, Shulamith Graus

    2000-01-01

    Extends dynamic model of cognitive growth proposed by van Geert in three directions: (1) added a term to consider exposure to material to be learned; (2) developed method to apply model to cross-sectional studies; and (3) developed procedure to scale cognitive abilities tests with items of varying difficulty. Tests model with 2- to 15-year-olds'…

  8. Constitutive Laws for Dynamic Modelling of Soils,

    DTIC Science & Technology

    1980-01-01

    Constitutive Model for Fluid-Saturated Granular Material ", 8th US Nat...CLAY b) CAP MODEL c) ZIENKIEWICZ’S VISCOPLASTICITY 3 FIGURE 4 PARABOLIC UNDRAINED STRESS PATHS IN PENDER ’S MODEL =,*ammi I I I REPORT CONSTITUTIVE ...1971) : " Material Model for Granular Soils", ASCE Jour. Eng. Mech. Div., vol 97, EM3:935-950. DUNCAN, J.M. & CHANG, C.Y., (1970) : "Nonlinear

  9. Dynamical mean field solution of the Bose-Hubbard model.

    PubMed

    Anders, Peter; Gull, Emanuel; Pollet, Lode; Troyer, Matthias; Werner, Philipp

    2010-08-27

    We present the effective action and self-consistency equations for the bosonic dynamical mean field approximation to the bosonic Hubbard model and show that it provides remarkably accurate phase diagrams and correlation functions. To solve the bosonic dynamical mean field equations, we use a continuous-time Monte Carlo method for bosonic impurity models based on a diagrammatic expansion in the hybridization and condensate coupling. This method is readily generalized to bosonic mixtures, spinful bosons, and Bose-Fermi mixtures.

  10. Critical domain-wall dynamics of model B.

    PubMed

    Dong, R H; Zheng, B; Zhou, N J

    2009-05-01

    With Monte Carlo methods, we simulate the critical domain-wall dynamics of model B, taking the two-dimensional Ising model as an example. In the macroscopic short-time regime, a dynamic scaling form is revealed. Due to the existence of the quasirandom walkers, the magnetization shows intrinsic dependence on the lattice size L . An exponent which governs the L dependence of the magnetization is measured to be sigma=0.243(8) .

  11. Modeling of Network Dynamics under Markovian and Structural Perturbations

    DTIC Science & Technology

    2011-03-04

    U.S. Army Research Office P.O. Box 12211 Research Triangle Park, NC 27709-2211 15. SUBJECT TERMS Markov Dynamics, Networks, Structural...Models by Using Stock Price Data and Basic Statistics, Neural, Parallel & Scientific Computations, Vol. 18(2010), pp. 269-282. 8...Large Deviations with Applications to Exit Times for switched Markov Processes 3. G. S. Ladde and Arnut Paothong, Dynamic Modeling and

  12. Modeling and Parameterization Study of Radiance in a Dynamic Ocean

    DTIC Science & Technology

    2012-09-30

    simulation of nonlinear capillary-gravity waves (CGW) • develop numerical capabilities for free-surface turbulence ( FST ) and the resultant surface...based simulations and modeling to solve the problem of ocean RT in a dynamic SBL environment that includes CGW and FST . The complex dynamic...processes of the ocean SBL, the nonlinear CGW interactions, and the development and transport of FST are modeled using physics-based computations. The

  13. Developing Generic Dynamic Models for the 2030 Eastern Interconnection Grid

    SciTech Connect

    Kou, Gefei; Hadley, Stanton W; Markham, Penn N; Liu, Yilu

    2013-12-01

    The Eastern Interconnection Planning Collaborative (EIPC) has built three major power flow cases for the 2030 Eastern Interconnection (EI) based on various levels of energy/environmental policy conditions, technology advances, and load growth. Using the power flow cases, this report documents the process of developing the generic 2030 dynamic models using typical dynamic parameters. The constructed model was validated indirectly using the synchronized phasor measurements by removing the wind generation temporarily.

  14. Ship Dynamics in the Surf Zone Model Testing

    DTIC Science & Technology

    2008-07-01

    Department Technical Report Ship Dynamics in the Surf Zone Model Testing By Miguel Quintero Faydra Schaffer N SW C C D -C IS D -2 00 8...Dynamics in the Surf Zone Model Testing 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 5d. PROJECT NUMBER 6. AUTHOR(S) 5e. TASK...NUMBER Miguel Quintero and Faydra Schaffer 5f. WORK UNIT NUMBER 7. PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) AND ADDRESS(ES) 8

  15. Adaptive Networks Foundations: Modeling, Dynamics, and Applications

    DTIC Science & Technology

    2013-02-13

    22-Mar. 2, 2012. • Shaw, L.B., Long, Y., and Gross, T. Simultaneous spread of infection and information in adaptive networks. Casablanca ...International Workshop on Mathematical Biology, Casablanca , Morocco, Jun. 20-24, 2011. • Tunc, I. and Shaw, L.B. Dynamics of infection spreading in adaptive...Defense The number of undergraduates funded by your agreement who graduated during this period and will receive scholarships or fellowships for further

  16. New model describing the dynamical behaviour of penetration rates

    NASA Astrophysics Data System (ADS)

    Tashiro, Tohru; Minagawa, Hiroe; Chiba, Michiko

    2013-02-01

    We propose a hierarchical logistic equation as a model to describe the dynamical behaviour of a penetration rate of a prevalent stuff. In this model, a memory, how many people who already possess it a person who does not process it yet met, is considered, which does not exist in the logistic model. As an application, we apply this model to iPod sales data, and find that this model can approximate the data much better than the logistic equation.

  17. Dynamic model of microalgal production in tubular photobioreactors.

    PubMed

    Fernández, I; Acién, F G; Fernández, J M; Guzmán, J L; Magán, J J; Berenguel, M

    2012-12-01

    A dynamic model for microalgal culture is presented. The model takes into account the fluid-dynamic and mass transfer, in addition to biological phenomena, it being based on fundamental principles. The model has been calibrated and validated using data from a pilot-scale tubular photobioreactor but it can be extended to other designs. It can be used to determine, from experimental measurements, the values of characteristic parameters. The model also allows a simulation of the system's dynamic behaviour in response to solar radiation, making it a useful tool for design and operation optimization of photobioreactors. Moreover, the model permits the identification of local pH gradients, dissolved oxygen and dissolved carbon dioxide; that can damage microalgae growth. In addition, the developed model can map the different characteristic time scales of phenomena inside microalgae cultures within tubular photobioreactors, meaning it is a valuable tool in the development of advanced control strategies for microalgae cultures.

  18. A micromechanical constitutive model for the dynamic response of brittle materials "Dynamic response of marble"

    NASA Astrophysics Data System (ADS)

    Haberman, Keith

    2001-07-01

    A micromechanically based constitutive model for the dynamic inelastic behavior of brittle materials, specifically "Dionysus-Pentelicon marble" with distributed microcracking is presented. Dionysus-Pentelicon marble was used in the construction of the Parthenon, in Athens, Greece. The constitutive model is a key component in the ability to simulate this historic explosion and the preceding bombardment form cannon fire that occurred at the Parthenon in 1678. Experiments were performed by Rosakis (1999) that characterized the static and dynamic response of this unique material. A micromechanical constitutive model that was previously successfully used to model the dynamic response of granular brittle materials is presented. The constitutive model was fitted to the experimental data for marble and reproduced the experimentally observed basic uniaxial dynamic behavior quite well. This micromechanical constitutive model was then implemented into the three dimensional nonlinear lagrangain finite element code Dyna3d(1998). Implementing this methodology into the three dimensional nonlinear dynamic finite element code allowed the model to be exercised on several preliminary impact experiments. During future simulations, the model is to be used in conjunction with other numerical techniques to simulate projectile impact and blast loading on the Dionysus-Pentelicon marble and on the structure of the Parthenon.

  19. From terrestrial to aquatic fluxes: Integrating stream dynamics within a dynamic global vegetation modeling framework

    NASA Astrophysics Data System (ADS)

    Hoy, Jerad; Poulter, Benjamin; Emmett, Kristen; Cross, Molly; Al-Chokhachy, Robert; Maneta, Marco

    2016-04-01

    Integrated terrestrial ecosystem models simulate the dynamics and feedbacks between climate, vegetation, disturbance, and hydrology and are used to better understand biogeography and biogeochemical cycles. Extending dynamic vegetation models to the aquatic interface requires coupling surface and sub-surface runoff to catchment routing schemes and has the potential to enhance how researchers and managers investigate how changes in the environment might impact the availability of water resources for human and natural systems. In an effort towards creating such a coupled model, we developed catchment-based hydrologic routing and stream temperature model to pair with LPJ-GUESS, a dynamic global vegetation model. LPJ-GUESS simulates detailed stand-level vegetation dynamics such as growth, carbon allocation, and mortality, as well as various physical and hydrologic processes such as canopy interception and through-fall, and can be applied at small spatial scales, i.e., 1 km. We demonstrate how the coupled model can be used to investigate the effects of transient vegetation dynamics and CO2 on seasonal and annual stream discharge and temperature regimes. As a direct management application, we extend the modeling framework to predict habitat suitability for fish habitat within the Greater Yellowstone Ecosystem, a 200,000 km2 region that provides critical habitat for a range of aquatic species. The model is used to evaluate, quantitatively, the effects of management practices aimed to enhance hydrologic resilience to climate change, and benefits for water storage and fish habitat in the coming century.

  20. Dynamics of the Kitaev chain model under parametric pumping

    NASA Astrophysics Data System (ADS)

    Zvyagin, A. A.

    2014-07-01

    Dynamics of the Kitaev chain model under the effect of parametric pumping is studied. Two contributions to dynamical characteristics are considered: from the extended eigenstates and from the edge bound state (zero Majorana modes). It is shown that in the dynamical regime the frequencies of Rabi oscillations for zero Majorana modes are much larger than those related to gapped extended states. In the steady-state regime, the Rabi oscillations are blurred due to relaxation processes, and only oscillations of the characteristics of the model with the pumping frequency exist, producing absorption of the pumping power by extended states. Experimental realizations of the considered effect are discussed.

  1. Badlands: A parallel basin and landscape dynamics model

    NASA Astrophysics Data System (ADS)

    Salles, T.

    Over more than three decades, a number of numerical landscape evolution models (LEMs) have been developed to study the combined effects of climate, sea-level, tectonics and sediments on Earth surface dynamics. Most of them are written in efficient programming languages, but often cannot be used on parallel architectures. Here, I present a LEM which ports a common core of accepted physical principles governing landscape evolution into a distributed memory parallel environment. Badlands (acronym for BAsin anD LANdscape DynamicS) is an open-source, flexible, TIN-based landscape evolution model, built to simulate topography development at various space and time scales.

  2. Operational dynamic modeling transcending quantum and classical mechanics.

    PubMed

    Bondar, Denys I; Cabrera, Renan; Lompay, Robert R; Ivanov, Misha Yu; Rabitz, Herschel A

    2012-11-09

    We introduce a general and systematic theoretical framework for operational dynamic modeling (ODM) by combining a kinematic description of a model with the evolution of the dynamical average values. The kinematics includes the algebra of the observables and their defined averages. The evolution of the average values is drawn in the form of Ehrenfest-like theorems. We show that ODM is capable of encompassing wide-ranging dynamics from classical non-relativistic mechanics to quantum field theory. The generality of ODM should provide a basis for formulating novel theories.

  3. Minimal model for dynamic bonding in colloidal transient networks

    NASA Astrophysics Data System (ADS)

    Krinninger, Philip; Fortini, Andrea; Schmidt, Matthias

    2016-04-01

    We investigate a model for colloidal network formation using Brownian dynamics computer simulations. Hysteretic springs establish transient bonds between particles with repulsive cores. If a bonded pair of particles is separated by a cutoff distance, the spring vanishes and reappears only if the two particles contact each other. We present results for the bond lifetime distribution and investigate the properties of the van Hove dynamical two-body correlation function. The model displays crossover from fluidlike dynamics, via transient network formation, to arrested quasistatic network behavior.

  4. Dynamic analysis of grinding using the population balance model

    SciTech Connect

    Williams, M.C. |

    1995-12-31

    The dynamic behavior of batch mill, CSTR mill, and a closed grinding network consisting of a mill, sump, and cyclone was analyzed using the dynamic population balance model (PBM). The dynamic solution of the PBM of a batch, CSTR and a closed grinding network consisting of a mill, sump, and cyclone forms the basis of the dynamic analysis presented here. Two numerical dynamic solution approaches were used. These are: (1) providing additional constraints on breakage selection functions or (2) performing the Arbiter-Bhrany (or other) normalization of the selection functions. Actual experimental anthracite batch grinding data was used to obtain the functionality of the batch dynamic mill selection and breakage functions for a real physical system. The Levenberg-Marquardt algorithm for systems of constrained non-linear equations is used to solve the batch dynamic PBM grinding equations to obtain the grinding selection and breakage rate functions. The mill, sump and hydrocyclone were modeled as a CSTR operating at various retention times. Batch dynamic PBM data was used to provide the mill kinetic and breakage selection function data. Different dynamic solutions were obtained depending on the numerical approach used. Each solution approach to a dynamic PBM with transport, while giving the same prediction for a single batch grinding time, gives different solutions or predictions for mill composition for other grinding times. This fact makes dynamic nodal analysis and control problematic. The fact that the constraint solution approach gives a solution may suggest that normalization for closed networks is not necessary. Differences in solutions to the PBM cannot be excused away by inaccuracies in the data used to model the grinding phenomenon.

  5. A Lagrangian dynamic subgrid-scale model turbulence

    NASA Technical Reports Server (NTRS)

    Meneveau, C.; Lund, T. S.; Cabot, W.

    1994-01-01

    A new formulation of the dynamic subgrid-scale model is tested in which the error associated with the Germano identity is minimized over flow pathlines rather than over directions of statistical homogeneity. This procedure allows the application of the dynamic model with averaging to flows in complex geometries that do not possess homogeneous directions. The characteristic Lagrangian time scale over which the averaging is performed is chosen such that the model is purely dissipative, guaranteeing numerical stability when coupled with the Smagorinsky model. The formulation is tested successfully in forced and decaying isotropic turbulence and in fully developed and transitional channel flow. In homogeneous flows, the results are similar to those of the volume-averaged dynamic model, while in channel flow, the predictions are superior to those of the plane-averaged dynamic model. The relationship between the averaged terms in the model and vortical structures (worms) that appear in the LES is investigated. Computational overhead is kept small (about 10 percent above the CPU requirements of the volume or plane-averaged dynamic model) by using an approximate scheme to advance the Lagrangian tracking through first-order Euler time integration and linear interpolation in space.

  6. Dynamic reactor modeling with applications to SPR and ZEDNA

    SciTech Connect

    Suo-Anttila, Ahti Jorma

    2011-12-01

    A dynamic reactor model has been developed for pulse-type reactor applications. The model predicts reactor power, axial and radial fuel expansion, prompt and delayed neutron population, and prompt and delayed gamma population. All model predictions are made as a function of time. The model includes the reactivity effect of fuel expansion on a dynamic timescale as a feedback mechanism for reactor power. All inputs to the model are calculated from first principles, either directly by solving systems of equations, or indirectly from Monte Carlo N-Particle Transport Code (MCNP) derived results. The model does not include any empirical parameters that can be adjusted to match experimental data. Comparisons of model predictions to actual Sandia Pulse Reactor SPR-III pulses show very good agreement for a full range of pulse magnitudes. The model is also applied to Z-pinch externally driven neutron assembly (ZEDNA) type reactor designs to model both normal and off-normal ZEDNA operations.

  7. Modeling, clustering, and segmenting video with mixtures of dynamic textures.

    PubMed

    Chan, Antoni B; Vasconcelos, Nuno

    2008-05-01

    A dynamic texture is a spatio-temporal generative model for video, which represents video sequences as observations from a linear dynamical system. This work studies the mixture of dynamic textures, a statistical model for an ensemble of video sequences that is sampled from a finite collection of visual processes, each of which is a dynamic texture. An expectationmaximization (EM) algorithm is derived for learning the parameters of the model, and the model is related to previous works in linear systems, machine learning, time-series clustering, control theory, and computer vision. Through experimentation, it is shown that the mixture of dynamic textures is a suitable representation for both the appearance and dynamics of a variety of visual processes that have traditionally been challenging for computer vision (e.g. fire, steam, water, vehicle and pedestrian traffic, etc.). When compared with state-of-the-art methods in motion segmentation, including both temporal texture methods and traditional representations (e.g. optical flow or other localized motion representations), the mixture of dynamic textures achieves superior performance in the problems of clustering and segmenting video of such processes.

  8. Gradient dynamics models for liquid films with soluble surfactant

    NASA Astrophysics Data System (ADS)

    Thiele, Uwe; Archer, Andrew J.; Pismen, Len M.

    2016-12-01

    In this paper we propose equations of motion for the dynamics of liquid films of surfactant suspensions that consist of a general gradient dynamics framework based on an underlying energy functional. This extends the gradient dynamics approach to dissipative nonequilibrium thin-film systems with several variables and casts their dynamic equations into a form that reproduces Onsager's reciprocity relations. We first discuss the general form of gradient dynamics models for an arbitrary number of fields and discuss simple well-known examples with one or two fields. Next we develop the three-field gradient dynamics model for a thin liquid film covered by soluble surfactant and discuss how it automatically results in consistent convective (driven by pressure gradients, Marangoni forces, and Korteweg stresses), diffusive, adsorption or desorption, and evaporation fluxes. We then show that in the dilute limit, the model reduces to the well-known hydrodynamic form that includes Marangoni fluxes due to a linear equation of state. In this case the energy functional incorporates wetting energy, surface energy of the free interface (constant contribution plus an entropic term), and bulk mixing entropy. Subsequently, as an example, we show how various extensions of the energy functional result in consistent dynamical models that account for nonlinear equations of state, concentration-dependent wettability, and surfactant and film bulk decomposition phase transitions. We conclude with a discussion of further possible extensions towards systems with micelles, surfactant adsorption at the solid substrate, and bioactive behavior.

  9. Dynamic inverse models in human-cyber-physical systems

    NASA Astrophysics Data System (ADS)

    Robinson, Ryan M.; Scobee, Dexter R. R.; Burden, Samuel A.; Sastry, S. Shankar

    2016-05-01

    Human interaction with the physical world is increasingly mediated by automation. This interaction is characterized by dynamic coupling between robotic (i.e. cyber) and neuromechanical (i.e. human) decision-making agents. Guaranteeing performance of such human-cyber-physical systems will require predictive mathematical models of this dynamic coupling. Toward this end, we propose a rapprochement between robotics and neuromechanics premised on the existence of internal forward and inverse models in the human agent. We hypothesize that, in tele-robotic applications of interest, a human operator learns to invert automation dynamics, directly translating from desired task to required control input. By formulating the model inversion problem in the context of a tracking task for a nonlinear control system in control-a_ne form, we derive criteria for exponential tracking and show that the resulting dynamic inverse model generally renders a portion of the physical system state (i.e., the internal dynamics) unobservable from the human operator's perspective. Under stability conditions, we show that the human can achieve exponential tracking without formulating an estimate of the system's state so long as they possess an accurate model of the system's dynamics. These theoretical results are illustrated using a planar quadrotor example. We then demonstrate that the automation can intervene to improve performance of the tracking task by solving an optimal control problem. Performance is guaranteed to improve under the assumption that the human learns and inverts the dynamic model of the altered system. We conclude with a discussion of practical limitations that may hinder exact dynamic model inversion.

  10. ERCOT's Dynamic Model of Wind Turbine Generators: Preprint

    SciTech Connect

    Muljadi, E.; Butterfield, C. P.; Conto, J.; Donoho, K.

    2005-08-01

    By the end of 2003, the total installed wind farm capacity in the Electric Reliability Council of Texas (ERCOT) system was approximately 1 gigawatt (GW) and the total in the United States was about 5 GW. As the number of wind turbines installed throughout the United States increases, there is a greater need for dynamic wind turbine generator models that can properly model entire power systems for different types of analysis. This paper describes the ERCOT dynamic models and simulations of a simple network with different types of wind turbine models currently available.

  11. Generalized force model of traffic dynamics

    NASA Astrophysics Data System (ADS)

    Helbing, Dirk; Tilch, Benno

    1998-07-01

    Floating car data of car-following behavior in cities were compared to existing microsimulation models, after their parameters had been calibrated to the experimental data. With these parameter values, additional simulations have been carried out, e.g., of a moving car which approaches a stopped car. It turned out that, in order to manage such kinds of situations without producing accidents, improved traffic models are needed. Good results were obtained with the proposed generalized force model.

  12. Structural Identifiability of Dynamic Systems Biology Models

    PubMed Central

    Villaverde, Alejandro F.

    2016-01-01

    A powerful way of gaining insight into biological systems is by creating a nonlinear differential equation model, which usually contains many unknown parameters. Such a model is called structurally identifiable if it is possible to determine the values of its parameters from measurements of the model outputs. Structural identifiability is a prerequisite for parameter estimation, and should be assessed before exploiting a model. However, this analysis is seldom performed due to the high computational cost involved in the necessary symbolic calculations, which quickly becomes prohibitive as the problem size increases. In this paper we show how to analyse the structural identifiability of a very general class of nonlinear models by extending methods originally developed for studying observability. We present results about models whose identifiability had not been previously determined, report unidentifiabilities that had not been found before, and show how to modify those unidentifiable models to make them identifiable. This method helps prevent problems caused by lack of identifiability analysis, which can compromise the success of tasks such as experiment design, parameter estimation, and model-based optimization. The procedure is called STRIKE-GOLDD (STRuctural Identifiability taKen as Extended-Generalized Observability with Lie Derivatives and Decomposition), and it is implemented in a MATLAB toolbox which is available as open source software. The broad applicability of this approach facilitates the analysis of the increasingly complex models used in systems biology and other areas. PMID:27792726

  13. DYNAMICAL MODEL OF AN EXPANDING SHELL

    SciTech Connect

    Pe'er, Asaf

    2012-06-10

    Expanding blast waves are ubiquitous in many astronomical sources, such as supernova remnants, X-ray emitting binaries, and gamma-ray bursts. I consider here the dynamics of such an expanding blast wave, both in the adiabatic and the radiative regimes. As the blast wave collects material from its surroundings, it decelerates. A full description of the temporal evolution of the blast wave requires consideration of both the energy density and the pressure of the shocked material. The obtained equation is different from earlier works in which only the energy was considered. The solution converges to the familiar results in both the ultrarelativistic and the sub-relativistic (Newtonian) regimes.

  14. Modeling Tools Predict Flow in Fluid Dynamics

    NASA Technical Reports Server (NTRS)

    2010-01-01

    "Because rocket engines operate under extreme temperature and pressure, they present a unique challenge to designers who must test and simulate the technology. To this end, CRAFT Tech Inc., of Pipersville, Pennsylvania, won Small Business Innovation Research (SBIR) contracts from Marshall Space Flight Center to develop software to simulate cryogenic fluid flows and related phenomena. CRAFT Tech enhanced its CRUNCH CFD (computational fluid dynamics) software to simulate phenomena in various liquid propulsion components and systems. Today, both government and industry clients in the aerospace, utilities, and petrochemical industries use the software for analyzing existing systems as well as designing new ones."

  15. Development of a Stirling System Dynamic Model With Enhanced Thermodynamics

    NASA Technical Reports Server (NTRS)

    Regan, Timothy F.; Lewandowski, Edward J.

    2005-01-01

    The Stirling Convertor System Dynamic Model developed at NASA Glenn Research Center is a software model developed from first principles that includes the mechanical and mounting dynamics, the thermodynamics, the linear alternator, and the controller of a free-piston Stirling power convertor, along with the end user load. As such it represents the first detailed modeling tool for fully integrated Stirling convertor-based power systems. The thermodynamics of the model were originally a form of the isothermal Stirling cycle. In some situations it may be desirable to improve the accuracy of the Stirling cycle portion of the model. An option under consideration is to enhance the SDM thermodynamics by coupling the model with Gedeon Associates Sage simulation code. The result will be a model that gives a more accurate prediction of the performance and dynamics of the free-piston Stirling convertor. A method of integrating the Sage simulation code with the System Dynamic Model is described. Results of SDM and Sage simulation are compared to test data. Model parameter estimation and model validation are discussed.

  16. Dynamical aspects in modeling long cantilevering workpieces in tool grinding

    NASA Astrophysics Data System (ADS)

    de Payrebrune, K. M.; Kröger, M.

    2015-10-01

    Tool grinding is a complex process in which temporal dynamics of workpiece and grinding wheel, and the material removal process itself, affect the quality of the workpiece. Many existing models already provide the option to study the dynamics of workpiece and grinding wheel or cutting forces and material removal processes, but mostly do not combine these aspects. Here, workpiece dynamics are studied in relation to its structural and geometrical changing properties during machining, and are used to simulate the vibrations and deformation of the workpiece during grinding. In combination with models for the grinding wheel and the material removal process, dependencies of the workpiece dynamics on the workpieces quality are studied and results from this hybrid model are in excellent agreement with empirical measurements. Furthermore, the results demonstrate the significant effects of deformations of the workpiece on its final geometry.

  17. Volume Dynamics Propulsion System Modeling for Supersonics Vehicle Research

    NASA Technical Reports Server (NTRS)

    Kopasakis, George; Connolly, Joseph W.; Paxson, Daniel E.; Ma, Peter

    2008-01-01

    Under the NASA Fundamental Aeronautics Program, the Supersonics Project is working to overcome the obstacles to supersonic commercial flight. The proposed vehicles are long slim body aircraft with pronounced aero-servo-elastic modes. These modes can potentially couple with propulsion system dynamics; leading to performance challenges such as aircraft ride quality and stability. Other disturbances upstream of the engine generated from atmospheric wind gusts, angle of attack, and yaw can have similar effects. In addition, for optimal propulsion system performance, normal inlet-engine operations are required to be closer to compressor stall and inlet unstart. To study these phenomena an integrated model is needed that includes both airframe structural dynamics as well as the propulsion system dynamics. This paper covers the propulsion system component volume dynamics modeling of a turbojet engine that will be used for an integrated vehicle Aero-Propulso-Servo-Elastic model and for propulsion efficiency studies.

  18. Volume Dynamics Propulsion System Modeling for Supersonics Vehicle Research

    NASA Technical Reports Server (NTRS)

    Kopasakis, George; Connolly, Joseph W.; Paxson, Daniel E.; Ma, Peter

    2008-01-01

    Under the NASA Fundamental Aeronautics Program the Supersonics Project is working to overcome the obstacles to supersonic commercial flight. The proposed vehicles are long slim body aircraft with pronounced aero-servo-elastic modes. These modes can potentially couple with propulsion system dynamics; leading to performance challenges such as aircraft ride quality and stability. Other disturbances upstream of the engine generated from atmospheric wind gusts, angle of attack, and yaw can have similar effects. In addition, for optimal propulsion system performance, normal inlet-engine operations are required to be closer to compressor stall and inlet unstart. To study these phenomena an integrated model is needed that includes both airframe structural dynamics as well as the propulsion system dynamics. This paper covers the propulsion system component volume dynamics modeling of a turbojet engine that will be used for an integrated vehicle Aero- Propulso-Servo-Elastic model and for propulsion efficiency studies.

  19. Volume Dynamics Propulsion System Modeling for Supersonics Vehicle Research

    NASA Technical Reports Server (NTRS)

    Kopasakis, George; Connolly, Joseph W.; Paxson, Daniel E.; Ma, Peter

    2010-01-01

    Under the NASA Fundamental Aeronautics Program the Supersonics Project is working to overcome the obstacles to supersonic commercial flight. The proposed vehicles are long slim body aircraft with pronounced aero-servo-elastic modes. These modes can potentially couple with propulsion system dynamics; leading to performance challenges such as aircraft ride quality and stability. Other disturbances upstream of the engine generated from atmospheric wind gusts, angle of attack, and yaw can have similar effects. In addition, for optimal propulsion system performance, normal inlet-engine operations are required to be closer to compressor stall and inlet unstart. To study these phenomena an integrated model is needed that includes both airframe structural dynamics as well as the propulsion system dynamics. This paper covers the propulsion system component volume dynamics modeling of a turbojet engine that will be used for an integrated vehicle Aero-Propulso-Servo-Elastic model and for propulsion efficiency studies.

  20. Integrating microbial diversity in soil carbon dynamic models parameters

    NASA Astrophysics Data System (ADS)

    Louis, Benjamin; Menasseri-Aubry, Safya; Leterme, Philippe; Maron, Pierre-Alain; Viaud, Valérie

    2015-04-01

    Faced with the numerous concerns about soil carbon dynamic, a large quantity of carbon dynamic models has been developed during the last century. These models are mainly in the form of deterministic compartment models with carbon fluxes between compartments represented by ordinary differential equations. Nowadays, lots of them consider the microbial biomass as a compartment of the soil organic matter (carbon quantity). But the amount of microbial carbon is rarely used in the differential equations of the models as a limiting factor. Additionally, microbial diversity and community composition are mostly missing, although last advances in soil microbial analytical methods during the two past decades have shown that these characteristics play also a significant role in soil carbon dynamic. As soil microorganisms are essential drivers of soil carbon dynamic, the question about explicitly integrating their role have become a key issue in soil carbon dynamic models development. Some interesting attempts can be found and are dominated by the incorporation of several compartments of different groups of microbial biomass in terms of functional traits and/or biogeochemical compositions to integrate microbial diversity. However, these models are basically heuristic models in the sense that they are used to test hypotheses through simulations. They have rarely been confronted to real data and thus cannot be used to predict realistic situations. The objective of this work was to empirically integrate microbial diversity in a simple model of carbon dynamic through statistical modelling of the model parameters. This work is based on available experimental results coming from a French National Research Agency program called DIMIMOS. Briefly, 13C-labelled wheat residue has been incorporated into soils with different pedological characteristics and land use history. Then, the soils have been incubated during 104 days and labelled and non-labelled CO2 fluxes have been measured at ten

  1. A mathematical model of blood, cerebrospinal fluid and brain dynamics.

    PubMed

    Linninger, Andreas A; Xenos, Michalis; Sweetman, Brian; Ponkshe, Sukruti; Guo, Xiaodong; Penn, Richard

    2009-12-01

    Using first principles of fluid and solid mechanics a comprehensive model of human intracranial dynamics is proposed. Blood, cerebrospinal fluid (CSF) and brain parenchyma as well as the spinal canal are included. The compartmental model predicts intracranial pressure gradients, blood and CSF flows and displacements in normal and pathological conditions like communicating hydrocephalus. The system of differential equations of first principles conservation balances is discretized and solved numerically. Fluid-solid interactions of the brain parenchyma with cerebral blood and CSF are calculated. The model provides the transitions from normal dynamics to the diseased state during the onset of communicating hydrocephalus. Predicted results were compared with physiological data from Cine phase-contrast magnetic resonance imaging to verify the dynamic model. Bolus injections into the CSF are simulated in the model and found to agree with clinical measurements.

  2. A mathematical model of the dynamics of antitumor laser immunotherapy

    NASA Astrophysics Data System (ADS)

    Dawkins, Bryan A.; Laverty, Sean M.

    2014-02-01

    We use a mathematical model to describe and predict the population dynamics of tumor cells, immune cells, and other immune components in a host undergoing laser immunotherapy treatment against metastatic cancer. We incorporate key elements of the treatment into the model: a function describing the laser-induced primary tumor cell death and parameters capturing the role and strength of the primary immunoadjuvant, glycated chitosan. We focus on identifying conditions that ensure a successful treatment. In particular, we study the patient response (i.e., anti-tumor immune dynamics and treatment outcome) in two different but related mathematical models as we vary quantitative features of the immune system (supply, proliferation, death, and interaction rates). We compare immune dynamics of a `baseline' immune model against an `augmented' model (with additional cell types and antibodies) and in both, we find that using strong immunoadjuvants, like glycated chitosan, that enhance dendritic cell activity yields more promising patient outcomes.

  3. Development of a dynamic computational model of social cognitive theory.

    PubMed

    Riley, William T; Martin, Cesar A; Rivera, Daniel E; Hekler, Eric B; Adams, Marc A; Buman, Matthew P; Pavel, Misha; King, Abby C

    2016-12-01

    Social cognitive theory (SCT) is among the most influential theories of behavior change and has been used as the conceptual basis of health behavior interventions for smoking cessation, weight management, and other health behaviors. SCT and other behavior theories were developed primarily to explain differences between individuals, but explanatory theories of within-person behavioral variability are increasingly needed as new technologies allow for intensive longitudinal measures and interventions adapted from these inputs. These within-person explanatory theoretical applications can be modeled as dynamical systems. SCT constructs, such as reciprocal determinism, are inherently dynamical in nature, but SCT has not been modeled as a dynamical system. This paper describes the development of a dynamical system model of SCT using fluid analogies and control systems principles drawn from engineering. Simulations of this model were performed to assess if the model performed as predicted based on theory and empirical studies of SCT. This initial model generates precise and testable quantitative predictions for future intensive longitudinal research. Dynamic modeling approaches provide a rigorous method for advancing health behavior theory development and refinement and for guiding the development of more potent and efficient interventions.

  4. Parallel Dynamics of Continuous Hopfield Model Revisited

    NASA Astrophysics Data System (ADS)

    Mimura, Kazushi

    2009-03-01

    We have applied the generating functional analysis (GFA) to the continuous Hopfield model. We have also confirmed that the GFA predictions in some typical cases exhibit good consistency with computer simulation results. When a retarded self-interaction term is omitted, the GFA result becomes identical to that obtained using the statistical neurodynamics as well as the case of the sequential binary Hopfield model.

  5. Full dynamic model of Golden Gate Bridge

    NASA Astrophysics Data System (ADS)

    Game, Thomas; Vos, Cameron; Morshedi, Rafid; Gratton, Rebecca; Alonso-Marroquin, Fernando; Tahmasebinia, Faham

    2016-08-01

    An investigation into the structural systems of the Golden Gate Bridge when subject to dead, live, wind and earthquake loading was carried out using finite element modelling. This investigation was carried out using Strand7 and was verified through analytical calculations. This report begins with a study into the structural elements of the actual bridge which includes a summary of the member and section sizes and dimensions. From this study a finite element model was produced. This report outlines the modelling techniques, element types and analysis solvers used in modelling and analysing the structure. This report then considers the member sizes used in the model and outlines any variations in member sizes required for a successful analysis. Finally, this report discusses this results produces by the analysis and verifies the results through simple hand calculations.

  6. Modeling the dynamics of continental shelf carbon.

    PubMed

    Hofmann, Eileen E; Cahill, Bronwyn; Fennel, Katja; Friedrichs, Marjorie A M; Hyde, Kimberly; Lee, Cindy; Mannino, Antonio; Najjar, Raymond G; O'Reilly, John E; Wilkin, John; Xue, Jianhong

    2011-01-01

    Continental margin systems are important contributors to global nutrient and carbon budgets. Effort is needed to quantify this contribution and how it will be modified under changing patterns of climate and land use. Coupled models will be used to provide projections of future states of continental margin systems. Thus, it is appropriate to consider the limitations that impede the development of realistic models. Here, we provide an overview of the current state of modeling carbon cycling on continental margins as well as the processes and issues that provide the next challenges to such models. Our overview is done within the context of a coupled circulation-biogeochemical model developed for the northeastern North American continental shelf region. Particular choices of forcing and initial fields and process parameterizations are used to illustrate the consequences for simulated distributions, as revealed by comparisons to observations using quantitative statistical metrics.

  7. Traffic chaotic dynamics modeling and analysis of deterministic network

    NASA Astrophysics Data System (ADS)

    Wu, Weiqiang; Huang, Ning; Wu, Zhitao

    2016-07-01

    Network traffic is an important and direct acting factor of network reliability and performance. To understand the behaviors of network traffic, chaotic dynamics models were proposed and helped to analyze nondeterministic network a lot. The previous research thought that the chaotic dynamics behavior was caused by random factors, and the deterministic networks would not exhibit chaotic dynamics behavior because of lacking of random factors. In this paper, we first adopted chaos theory to analyze traffic data collected from a typical deterministic network testbed — avionics full duplex switched Ethernet (AFDX, a typical deterministic network) testbed, and found that the chaotic dynamics behavior also existed in deterministic network. Then in order to explore the chaos generating mechanism, we applied the mean field theory to construct the traffic dynamics equation (TDE) for deterministic network traffic modeling without any network random factors. Through studying the derived TDE, we proposed that chaotic dynamics was one of the nature properties of network traffic, and it also could be looked as the action effect of TDE control parameters. A network simulation was performed and the results verified that the network congestion resulted in the chaotic dynamics for a deterministic network, which was identical with expectation of TDE. Our research will be helpful to analyze the traffic complicated dynamics behavior for deterministic network and contribute to network reliability designing and analysis.

  8. Comparing modelled fire dynamics with charcoal records for the Holocene

    NASA Astrophysics Data System (ADS)

    Brücher, Tim; Brovkin, Victor; Kloster, Silvia; Marlon, Jennifer; Power, Mitch

    2014-05-01

    An Earth System model of intermediate complexity, CLIMBER-2, and land surface model JSBACH that includes dynamic vegetation, carbon cycle, and fire regime are used for simulation of natural fire dynamics through the last 8,000 years. To compare the fire model results with the charcoal reconstructions, several output variables of the fire model (burned area, carbon emissions) and several approaches of model output processing are tested. The z-scores out of charcoal dataset have been calculated for the period 8,000 to 200 BP to exclude a period of strong anthropogenic forcing during the last two centuries. The model analysis points mainly to an increasing fire activity during the Holocene for most of the investigated areas, which is in good correspondence to reconstructed fire trends out of charcoal data for most of the tested regions, while for few regions such as Europe the simulated trend and the reconstructed trends are different. The difference between the modeled and reconstructed fire activity could be due to absence of the anthropogenic forcing in the model simulations, but also due to limitations of model assumptions for modeling fire dynamics. For the model trends, the usage of averaging or z-score processing of model output resulted in similar directions of trend. Therefore, the approach of fire model output processing does not effect results of the model-data comparison. Global fire modeling is still in its infancy; improving our representations of fire through validation exercises such as what we present here is thus essential before testing hypotheses about the effects of extreme climate changes on fire behavior and potential feedbacks that result from those changes. Brücher, T., Brovkin, V., Kloster, S., Marlon, J. R., and Power, M. J.: Comparing modelled fire dynamics with charcoal records for the Holocene, Clim. Past Discuss., 9, 6429-6458, doi:10.5194/cpd-9-6429-2013, 2013.

  9. Dynamics of the two process model of human sleep regulation

    NASA Astrophysics Data System (ADS)

    Kenngott, Max; McKay, Cavendish

    2011-04-01

    We examine the dynamics of the two process model of human sleep regulation. In this model, sleep propensity is governed by the interaction between a periodic threshold (process C) and a saturating growth/decay (process S). We find that the parameter space of this model admits sleep cycles with a wide variety of characteristics, many of which are not observed in normal human sleepers. We also examine the effects of phase dependent feedback on this model.

  10. Fractional dynamics pharmacokinetics-pharmacodynamic models.

    PubMed

    Verotta, Davide

    2010-06-01

    While an increasing number of fractional order integrals and differential equations applications have been reported in the physics, signal processing, engineering and bioengineering literatures, little attention has been paid to this class of models in the pharmacokinetics-pharmacodynamic (PKPD) literature. One of the reasons is computational: while the analytical solution of fractional differential equations is available in special cases, it this turns out that even the simplest PKPD models that can be constructed using fractional calculus do not allow an analytical solution. In this paper, we first introduce new families of PKPD models incorporating fractional order integrals and differential equations, and, second, exemplify and investigate their qualitative behavior. The families represent extensions of frequently used PK link and PD direct and indirect action models, using the tools of fractional calculus. In addition the PD models can be a function of a variable, the active drug, which can smoothly transition from concentration to exposure, to hyper-exposure, according to a fractional integral transformation. To investigate the behavior of the models we propose, we implement numerical algorithms for fractional integration and for the numerical solution of a system of fractional differential equations. For simplicity, in our investigation we concentrate on the pharmacodynamic side of the models, assuming standard (integer order) pharmacokinetics.

  11. Fractional dynamics pharmacokinetics–pharmacodynamic models

    PubMed Central

    2010-01-01

    While an increasing number of fractional order integrals and differential equations applications have been reported in the physics, signal processing, engineering and bioengineering literatures, little attention has been paid to this class of models in the pharmacokinetics–pharmacodynamic (PKPD) literature. One of the reasons is computational: while the analytical solution of fractional differential equations is available in special cases, it this turns out that even the simplest PKPD models that can be constructed using fractional calculus do not allow an analytical solution. In this paper, we first introduce new families of PKPD models incorporating fractional order integrals and differential equations, and, second, exemplify and investigate their qualitative behavior. The families represent extensions of frequently used PK link and PD direct and indirect action models, using the tools of fractional calculus. In addition the PD models can be a function of a variable, the active drug, which can smoothly transition from concentration to exposure, to hyper-exposure, according to a fractional integral transformation. To investigate the behavior of the models we propose, we implement numerical algorithms for fractional integration and for the numerical solution of a system of fractional differential equations. For simplicity, in our investigation we concentrate on the pharmacodynamic side of the models, assuming standard (integer order) pharmacokinetics. PMID:20455076

  12. SSME structural dynamic model development, phase 2

    NASA Technical Reports Server (NTRS)

    Foley, M. J.; Wilson, V. L.

    1985-01-01

    A set of test correlated mathematical models of the SSME High Pressure Oxygen Turbopump (HPOTP) housing and rotor assembly was produced. New analysis methods within the EISI/EAL and SPAR systems were investigated and runstreams for future use were developed. The LOX pump models have undergone extensive modification since the first phase of this effort was completed. The rotor assembly from the original model was abandoned and a new, more detailed model constructed. A description of the new rotor math model is presented. Also, the pump housing model was continually modified as additional test data have become available. This model is documented along with measured test results. Many of the more advanced features of the EAL/SPAR finite element analysis system were exercised. These included the cyclic symmetry option, the macro-element procedures, and the fluid analysis capability. In addition, a new tool was developed that allows an automated analysis of a disjoint structure in terms of its component modes. A complete description of the implementation of the Craig-Bampton method is given along with two worked examples.

  13. Computational fluid dynamic modelling of cavitation

    NASA Technical Reports Server (NTRS)

    Deshpande, Manish; Feng, Jinzhang; Merkle, Charles L.

    1993-01-01

    Models in sheet cavitation in cryogenic fluids are developed for use in Euler and Navier-Stokes codes. The models are based upon earlier potential-flow models but enable the cavity inception point, length, and shape to be determined as part of the computation. In the present paper, numerical solutions are compared with experimental measurements for both pressure distribution and cavity length. Comparisons between models are also presented. The CFD model provides a relatively simple modification to an existing code to enable cavitation performance predictions to be included. The analysis also has the added ability of incorporating thermodynamic effects of cryogenic fluids into the analysis. Extensions of the current two-dimensional steady state analysis to three-dimensions and/or time-dependent flows are, in principle, straightforward although geometrical issues become more complicated. Linearized models, however offer promise of providing effective cavitation modeling in three-dimensions. This analysis presents good potential for improved understanding of many phenomena associated with cavity flows.

  14. A Separable, Dynamically Local Ontological Model of Quantum Mechanics

    NASA Astrophysics Data System (ADS)

    Pienaar, Jacques

    2016-01-01

    A model of reality is called separable if the state of a composite system is equal to the union of the states of its parts, located in different regions of space. Spekkens has argued that it is trivial to reproduce the predictions of quantum mechanics using a separable ontological model, provided one allows for arbitrary violations of `dynamical locality'. However, since dynamical locality is strictly weaker than local causality, this leaves open the question of whether an ontological model for quantum mechanics can be both separable and dynamically local. We answer this question in the affirmative, using an ontological model based on previous work by Deutsch and Hayden. Although the original formulation of the model avoids Bell's theorem by denying that measurements result in single, definite outcomes, we show that the model can alternatively be cast in the framework of ontological models, where Bell's theorem does apply. We find that the resulting model violates local causality, but satisfies both separability and dynamical locality, making it a candidate for the `most local' ontological model of quantum mechanics.

  15. On the modelling of gyroplane flight dynamics

    NASA Astrophysics Data System (ADS)

    Houston, Stewart; Thomson, Douglas

    2017-01-01

    The study of the gyroplane, with a few exceptions, is largely neglected in the literature which is indicative of a niche configuration limited to the sport and recreational market where resources are limited. However the contemporary needs of an informed population of owners and constructors, as well as the possibility of a wider application of such low-cost rotorcraft in other roles, suggests that an examination of the mathematical modelling requirements for the study of gyroplane flight mechanics is timely. Rotorcraft mathematical modelling has become stratified in three levels, each one defining the inclusion of various layers of complexity added to embrace specific modelling features as well as an attempt to improve fidelity. This paper examines the modelling of gyroplane flight mechanics in the context of this complexity, and shows that relatively simple formulations are adequate for capturing most aspects of gyroplane trim, stability and control characteristics. In particular the conventional 6 degree-of-freedom model structure is suitable for the synthesis of models from flight test data as well as being the framework for reducing the order of the higher levels of modelling. However, a high level of modelling can be required to mimic some aspects of behaviour observed in data gathered from flight experiments and even then can fail to capture other details. These limitations are addressed in the paper. It is concluded that the mathematical modelling of gyroplanes for the simulation and analysis of trim, stability and control presents no special difficulty and the conventional techniques, methods and formulations familiar to the rotary-wing community are directly applicable.

  16. Contour dynamics model for electric discharges.

    PubMed

    Arrayás, M; Fontelos, M A; Jiménez, C

    2010-03-01

    We present an effective contour model for electrical discharges deduced as the asymptotic limit of the minimal streamer model for the propagation of electric discharges, in the limit of small electron diffusion. The incorporation of curvature effects to the velocity propagation and not to the boundary conditions is a feature and makes it different from the classical Laplacian growth models. The dispersion relation for a nonplanar two-dimensional discharge is calculated. The development and propagation of fingerlike patterns are studied and their main features quantified.

  17. Helicopter flight dynamics simulation with refined aerodynamic modeling

    NASA Astrophysics Data System (ADS)

    Theodore, Colin Rhys

    This dissertation describes the development of a coupled rotor-fuselage flight dynamic simulation that includes a maneuvering free wake model and a coupled flap-lag-torsion flexible blade representation. This mathematical model is used to investigate effects of main rotor inflow and blade modeling on various flight dynamics characteristics for both articulated and hingeless rotor helicopters. The inclusion of the free wake model requires the development of new numerical procedures for the calculation of trim equilibrium positions, for the extraction of high-order, constant coefficient linearized models, and for the calculation of the free flight responses to arbitrary pilot inputs. The free wake model, previously developed by other investigators at the University of Maryland, is capable of modeling the changes in rotor wake geometry resulting from maneuvers, and the effects of such changes on the main rotor inflow. The overall flight dynamic model is capable of simulating the helicopter behavior during maneuvers that can be arbitrarily large. The combination of sophisticated models of rotor wake and blade flexibility enables the flight dynamics model to capture the effects of maneuvers with unprecedented accuracy for simulations based on first principles: this is the main contribution of the research presented in this dissertation. The increased accuracy brought about by the free wake model significantly improves the predictions of the helicopter trim state for both helicopter configurations considered in this study. This is especially true in low speed flight and hover. The most significant improvements are seen in the predictions of the main rotor collective and power required by the rotor, which can be significantly underpredicted using traditional linear inflow models. Results show that the free-flight on-axis responses to pilot inputs can be predicted with good accuracy with a relatively unsophisticated models that do not include either a free wake nor a

  18. An extended dissipative particle dynamics model

    NASA Astrophysics Data System (ADS)

    Cotter, C. J.; Reich, S.

    2003-12-01

    The method of dissipative particle dynamics (DPD) was introduced by Hoogerbrugge and Koelman (Europhys. Lett., 19 (1992) 155) to study meso-scale material processes. The theoretical investigation of the DPD method was initiated by Espanol (Phys. Rev. E, 52 (1995) 1734) who used a Fokker-Planck formulation of the DPD method and applied the Mori-Zwanzig projection operator calculus to obtain the equations of hydrodynamics for DPD. A current limitation of DPD is that it requires a clear separation of scales between the resolved and unresolved processes. In this letter, we suggest a simple extension of DPD that allows for inclusion of unresolved stochastic processes with exponentially decaying variance for any value of the decay rate, and give an application of this algorithm to the simulation of the shallow-water equations using the Hamiltonian particle-mesh method. The proposed extension is as easy to implement as the standard DPD methods.

  19. Friction in a Model of Hamiltonian Dynamics

    NASA Astrophysics Data System (ADS)

    Fröhlich, Jürg; Gang, Zhou; Soffer, Avy

    2012-10-01

    We study the motion of a heavy tracer particle weakly coupled to a dense ideal Bose gas exhibiting Bose-Einstein condensation. In the so-called mean-field limit, the dynamics of this system approaches one determined by nonlinear Hamiltonian evolution equations describing a process of emission of Cerenkov radiation of sound waves into the Bose-Einstein condensate along the particle's trajectory. The emission of Cerenkov radiation results in a friction force with memory acting on the tracer particle and causing it to decelerate until it comes to rest. "A moving body will come to rest as soon as the force pushing it no longer acts on it in the manner necessary for its propulsion."—— Aristotle

  20. Optimal post-experiment estimation of poorly modeled dynamic systems

    NASA Technical Reports Server (NTRS)

    Mook, D. Joseph

    1988-01-01

    Recently, a novel strategy for post-experiment state estimation of discretely-measured dynamic systems has been developed. The method accounts for errors in the system dynamic model equations in a more general and rigorous manner than do filter-smoother algorithms. The dynamic model error terms do not require the usual process noise assumptions of zero-mean, symmetrically distributed random disturbances. Instead, the model error terms require no prior assumptions other than piecewise continuity. The resulting state estimates are more accurate than filters for applications in which the dynamic model error clearly violates the typical process noise assumptions, and the available measurements are sparse and/or noisy. Estimates of the dynamic model error, in addition to the states, are obtained as part of the solution of a two-point boundary value problem, and may be exploited for numerous reasons. In this paper, the basic technique is explained, and several example applications are given. Included among the examples are both state estimation and exploitation of the model error estimates.

  1. Dynamic model for the wheel-rail contact friction

    NASA Astrophysics Data System (ADS)

    Lee, HyunWook; Sandu, Corina; Holton, Carvel

    2012-02-01

    Accurately estimating the coefficient of friction (CoF) is essential in modelling railroad dynamics, reducing maintenance costs, and increasing safety in rail operations. The typical assumption of a constant CoF is widely used in theoretical studies; however, it has been noticed that the CoF is not constant, but rather depends on various dynamic parameters and instantaneous conditions. In this paper, we present a newly developed three-dimensional nonlinear CoF model for the dry rail condition and test the CoF variation using this model with estimated dynamic parameters. The wheel-rail is modelled as a mass-spring-damper system to simulate the basic wheel-rail dynamics. Although relatively simple, this model is considered sufficient for the purpose of this study. Simulations are performed at a train speed of 20 m/s using rail roughness as an excitation source. The model captures the CoF extremes and illustrates its nonlinear behaviour and instantaneous dependence on several structural and dynamic parameters.

  2. A dynamic, climate-driven model of Rift Valley fever.

    PubMed

    Leedale, Joseph; Jones, Anne E; Caminade, Cyril; Morse, Andrew P

    2016-03-31

    Outbreaks of Rift Valley fever (RVF) in eastern Africa have previously occurred following specific rainfall dynamics and flooding events that appear to support the emergence of large numbers of mosquito vectors. As such, transmission of the virus is considered to be sensitive to environmental conditions and therefore changes in climate can impact the spatiotemporal dynamics of epizootic vulnerability. Epidemiological information describing the methods and parameters of RVF transmission and its dependence on climatic factors are used to develop a new spatio-temporal mathematical model that simulates these dynamics and can predict the impact of changes in climate. The Liverpool RVF (LRVF) model is a new dynamic, process-based model driven by climate data that provides a predictive output of geographical changes in RVF outbreak susceptibility as a result of the climate and local livestock immunity. This description of the multi-disciplinary process of model development is accessible to mathematicians, epidemiological modellers and climate scientists, uniting dynamic mathematical modelling, empirical parameterisation and state-of-the-art climate information.

  3. A Comparative Study of Three Methodologies for Modeling Dynamic Stall

    NASA Technical Reports Server (NTRS)

    Sankar, L.; Rhee, M.; Tung, C.; ZibiBailly, J.; LeBalleur, J. C.; Blaise, D.; Rouzaud, O.

    2002-01-01

    During the past two decades, there has been an increased reliance on the use of computational fluid dynamics methods for modeling rotors in high speed forward flight. Computational methods are being developed for modeling the shock induced loads on the advancing side, first-principles based modeling of the trailing wake evolution, and for retreating blade stall. The retreating blade dynamic stall problem has received particular attention, because the large variations in lift and pitching moments encountered in dynamic stall can lead to blade vibrations and pitch link fatigue. Restricting to aerodynamics, the numerical prediction of dynamic stall is still a complex and challenging CFD problem, that, even in two dimensions at low speed, gathers the major difficulties of aerodynamics, such as the grid resolution requirements for the viscous phenomena at leading-edge bubbles or in mixing-layers, the bias of the numerical viscosity, and the major difficulties of the physical modeling, such as the turbulence models, the transition models, whose both determinant influences, already present in static maximal-lift or stall computations, are emphasized by the dynamic aspect of the phenomena.

  4. Dynamic Factor Analysis Models With Time-Varying Parameters.

    PubMed

    Chow, Sy-Miin; Zu, Jiyun; Shifren, Kim; Zhang, Guangjian

    2011-04-11

    Dynamic factor analysis models with time-varying parameters offer a valuable tool for evaluating multivariate time series data with time-varying dynamics and/or measurement properties. We use the Dynamic Model of Activation proposed by Zautra and colleagues (Zautra, Potter, & Reich, 1997) as a motivating example to construct a dynamic factor model with vector autoregressive relations and time-varying cross-regression parameters at the factor level. Using techniques drawn from the state-space literature, the model was fitted to a set of daily affect data (over 71 days) from 10 participants who had been diagnosed with Parkinson's disease. Our empirical results lend partial support and some potential refinement to the Dynamic Model of Activation with regard to how the time dependencies between positive and negative affects change over time. A simulation study is conducted to examine the performance of the proposed techniques when (a) changes in the time-varying parameters are represented using the true model of change, (b) supposedly time-invariant parameters are represented as time-varying, and

  5. Structural Dynamics Model of a Cartesian Robot

    DTIC Science & Technology

    1985-10-01

    validate the model in two ways: for fixed -configuration the mode shapes and natural frequencies are examined, and then for changing configuration the...to validate the model in two ways: for fixed -configuration the mode shapes and natural frequencies are examined, and then for changing configuration...Also to Ing. Angel Zamudio Poistan, Director of the Instituto Tecnol6gico de Veracruz, and Ing. Josug Nieto Metzger, Subdirector, for their support

  6. Dynamic model for automotive side impact crashes

    NASA Astrophysics Data System (ADS)

    Sun, Ludong; Taghvaeeyan, Saber; Rajamani, Rajesh

    2014-07-01

    A rigid body model to represent a side impact crash is constructed using five degrees-of-freedom (dof) for the vehicle and three dof for each occupant in the vehicle. Nonlinear stiffness and damping elements and the presence of physical gaps between several components make the model highly nonlinear. The model is validated using experimental crash test data from a National Highway Traffic Safety Administration (NHTSA) database. To simplify the parameter identification process and reduce the number of parameters to be identified at each stage, a two-step process is adopted in which the vehicle is first assumed to be unaffected by the presence of the occupants, and its model parameters are identified. Subsequently, the parameters in the occupant models are identified. The active set method with a performance index that includes both the L2 and L∞ norms is used for parameter identification. A challenge is posed by the fact that the optimisation problem involved is non-convex. To overcome this challenge, a large set of random initial values of parameter estimates is generated and the optimisation method is applied with all these initial conditions. The values of parameters that provide the minimal performance index from the entire set of initial conditions are then chosen as the best parameter values. The optimal parameters values thus identified are shown to significantly improve the match between the model responses and the experimentally measured sensor signals from the NHTSA crash test.

  7. Design for and efficient dynamic climate model with realistic geography

    NASA Technical Reports Server (NTRS)

    Suarez, M. J.; Abeles, J.

    1984-01-01

    The long term climate sensitivity which include realistic atmospheric dynamics are severely restricted by the expense of integrating atmospheric general circulation models are discussed. Taking as an example models used at GSFC for this dynamic model is an alternative which is of much lower horizontal or vertical resolution. The model of Heid and Suarez uses only two levels in the vertical and, although it has conventional grid resolution in the meridional direction, horizontal resolution is reduced by keeping only a few degrees of freedom in the zonal wavenumber spectrum. Without zonally asymmetric forcing this model simulates a day in roughly 1/2 second on a CRAY. The model under discussion is a fully finite differenced, zonally asymmetric version of the Heid-Suarez model. It is anticipated that speeds can be obtained a few seconds a day roughly 50 times faster than moderate resolution, multilayer GCM's.

  8. Integrative Analysis of Metabolic Models – from Structure to Dynamics

    PubMed Central

    Hartmann, Anja; Schreiber, Falk

    2015-01-01

    The characterization of biological systems with respect to their behavior and functionality based on versatile biochemical interactions is a major challenge. To understand these complex mechanisms at systems level modeling approaches are investigated. Different modeling formalisms allow metabolic models to be analyzed depending on the question to be solved, the biochemical knowledge and the availability of experimental data. Here, we describe a method for an integrative analysis of the structure and dynamics represented by qualitative and quantitative metabolic models. Using various formalisms, the metabolic model is analyzed from different perspectives. Determined structural and dynamic properties are visualized in the context of the metabolic model. Interaction techniques allow the exploration and visual analysis thereby leading to a broader understanding of the behavior and functionality of the underlying biological system. The System Biology Metabolic Model Framework (SBM2 – Framework) implements the developed method and, as an example, is applied for the integrative analysis of the crop plant potato. PMID:25674560

  9. Modeling transient correlations in heartbeat dynamics during sleep

    NASA Astrophysics Data System (ADS)

    Kantelhardt, J. W.; Havlin, S.; Ivanov, P. Ch.

    2003-04-01

    We propose a model to generate stochastic signals with transient correlations, i.e. correlations of different strength and different typical duration within finite segments of the signal. The exponents and crossovers characterizing the correlations in the signal and in its variance can be tuned independently and allow us to generate model time series which are in agreement with data of heartbeat dynamics observed during wake and during different sleep stages. We also propose a model dynamics that reproduces the changes in the heartbeat fluctuations during the entire night, including transitions between different sleep stages.

  10. Observation-based correction of dynamical models using thermostats

    PubMed Central

    Frank, Jason; Leimkuhler, Benedict

    2017-01-01

    Models used in simulation may give accurate short-term trajectories but distort long-term (statistical) properties. In this work, we augment a given approximate model with a control law (a ‘thermostat’) that gently perturbs the dynamical system to target a thermodynamic state consistent with a set of prescribed (possibly evolving) observations. As proof of concept, we provide an example involving a point vortex fluid model on the sphere, for which we show convergence of equilibrium quantities (in the stationary case) and the ability of the thermostat to dynamically track a transient state. PMID:28265197

  11. Particle-scale modelling of financial price dynamics

    NASA Astrophysics Data System (ADS)

    Liu, David

    2017-02-01

    This paper proposes a particle-based computational framework for modeling of financial price dynamics, which is an extension of the recent empirical work of Financial Brownian Particle (FBP), and discretizes and solves the Langevin equation that is the continuum representation of a financial market. The framework enables us to simulate the limit order book of the USD/JPY exchange rates. The research yields results that are in good agreement with the published empirical results. Our framework of modelling financial prices is of multidisciplinary nature, and can bridge the fields of empirical studies of financial order books, particle dynamics simulation, and modelling of financial market.

  12. Transmission dynamics of cholera: Mathematical modeling and control strategies

    NASA Astrophysics Data System (ADS)

    Sun, Gui-Quan; Xie, Jun-Hui; Huang, Sheng-He; Jin, Zhen; Li, Ming-Tao; Liu, Liqun

    2017-04-01

    Cholera, as an endemic disease around the world, has generated great threat to human society and caused enormous morbidity and mortality with weak surveillance system. In this paper, we propose a mathematical model to describe the transmission of Cholera. Moreover, basic reproduction number and the global dynamics of the dynamical model are obtained. Then we apply our model to characterize the transmission process of Cholera in China. It was found that, in order to avoid its outbreak in China, it may be better to increase immunization coverage rate and make effort to improve environmental management especially for drinking water. Our results may provide some new insights for elimination of Cholera.

  13. Interactive Visual Analysis within Dynamic Ocean Models

    NASA Astrophysics Data System (ADS)

    Butkiewicz, T.

    2012-12-01

    The many observation and simulation based ocean models available today can provide crucial insights for all fields of marine research and can serve as valuable references when planning data collection missions. However, the increasing size and complexity of these models makes leveraging their contents difficult for end users. Through a combination of data visualization techniques, interactive analysis tools, and new hardware technologies, the data within these models can be made more accessible to domain scientists. We present an interactive system that supports exploratory visual analysis within large-scale ocean flow models. The currents and eddies within the models are illustrated using effective, particle-based flow visualization techniques. Stereoscopic displays and rendering methods are employed to ensure that the user can correctly perceive the complex 3D structures of depth-dependent flow patterns. Interactive analysis tools are provided which allow the user to experiment through the introduction of their customizable virtual dye particles into the models to explore regions of interest. A multi-touch interface provides natural, efficient interaction, with custom multi-touch gestures simplifying the otherwise challenging tasks of navigating and positioning tools within a 3D environment. We demonstrate the potential applications of our visual analysis environment with two examples of real-world significance: Firstly, an example of using customized particles with physics-based behaviors to simulate pollutant release scenarios, including predicting the oil plume path for the 2010 Deepwater Horizon oil spill disaster. Secondly, an interactive tool for plotting and revising proposed autonomous underwater vehicle mission pathlines with respect to the surrounding flow patterns predicted by the model; as these survey vessels have extremely limited energy budgets, designing more efficient paths allows for greater survey areas.

  14. Dynamic Modeling for Development and Education: From Concepts to Numbers

    ERIC Educational Resources Information Center

    Van Geert, Paul

    2014-01-01

    The general aim of the article is to teach the reader how to transform conceptual models of change, development, and learning into mathematical expressions and how to use these equations to build dynamic models by means of the widely used spreadsheet program Excel. The explanation is supported by a number of Excel files, which the reader can…

  15. Reasoning with Atomic-Scale Molecular Dynamic Models

    ERIC Educational Resources Information Center

    Pallant, Amy; Tinker, Robert F.

    2004-01-01

    The studies reported in this paper are an initial effort to explore the applicability of computational models in introductory science learning. Two instructional interventions are described that use a molecular dynamics model embedded in a set of online learning activities with middle and high school students in 10 classrooms. The studies indicate…

  16. A family of dynamic models for large-eddy simulation

    NASA Technical Reports Server (NTRS)

    Carati, D.; Jansen, K.; Lund, T.

    1995-01-01

    Since its first application, the dynamic procedure has been recognized as an effective means to compute rather than prescribe the unknown coefficients that appear in a subgrid-scale model for Large-Eddy Simulation (LES). The dynamic procedure is usually used to determine the nondimensional coefficient in the Smagorinsky (1963) model. In reality the procedure is quite general and it is not limited to the Smagorinsky model by any theoretical or practical constraints. The purpose of this note is to consider a generalized family of dynamic eddy viscosity models that do not necessarily rely on the local equilibrium assumption built into the Smagorinsky model. By invoking an inertial range assumption, it will be shown that the coefficients in the new models need not be nondimensional. This additional degree of freedom allows the use of models that are scaled on traditionally unknown quantities such as the dissipation rate. In certain cases, the dynamic models with dimensional coefficients are simpler to implement, and allow for a 30% reduction in the number of required filtering operations.

  17. Modeling ion channel dynamics through reflected stochastic differential equations

    NASA Astrophysics Data System (ADS)

    Dangerfield, Ciara E.; Kay, David; Burrage, Kevin

    2012-05-01

    Ion channels are membrane proteins that open and close at random and play a vital role in the electrical dynamics of excitable cells. The stochastic nature of the conformational changes these proteins undergo can be significant, however current stochastic modeling methodologies limit the ability to study such systems. Discrete-state Markov chain models are seen as the “gold standard,” but are computationally intensive, restricting investigation of stochastic effects to the single-cell level. Continuous stochastic methods that use stochastic differential equations (SDEs) to model the system are more efficient but can lead to simulations that have no biological meaning. In this paper we show that modeling the behavior of ion channel dynamics by a reflected SDE ensures biologically realistic simulations, and we argue that this model follows from the continuous approximation of the discrete-state Markov chain model. Open channel and action potential statistics from simulations of ion channel dynamics using the reflected SDE are compared with those of a discrete-state Markov chain method. Results show that the reflected SDE simulations are in good agreement with the discrete-state approach. The reflected SDE model therefore provides a computationally efficient method to simulate ion channel dynamics while preserving the distributional properties of the discrete-state Markov chain model and also ensuring biologically realistic solutions. This framework could easily be extended to other biochemical reaction networks.

  18. Modeling network dynamics: the lac operon, a case study.

    PubMed

    Vilar, José M G; Guet, Călin C; Leibler, Stanislas

    2003-05-12

    We use the lac operon in Escherichia coli as a prototype system to illustrate the current state, applicability, and limitations of modeling the dynamics of cellular networks. We integrate three different levels of description (molecular, cellular, and that of cell population) into a single model, which seems to capture many experimental aspects of the system.

  19. Dynamic Modeling from Flight Data with Unknown Time Skews

    NASA Technical Reports Server (NTRS)

    Morelli, Eugene A.

    2016-01-01

    A method for estimating dynamic model parameters from flight data with unknown time skews is described and demonstrated. The method combines data reconstruction, nonlinear optimization, and equation-error parameter estimation in the frequency domain to accurately estimate both dynamic model parameters and the relative time skews in the data. Data from a nonlinear F-16 aircraft simulation with realistic noise, instrumentation errors, and arbitrary time skews were used to demonstrate the approach. The approach was further evaluated using flight data from a subscale jet transport aircraft, where the measured data were known to have relative time skews. Comparison of modeling results obtained from time-skewed and time-synchronized data showed that the method accurately estimates both dynamic model parameters and relative time skew parameters from flight data with unknown time skews.

  20. Approximate Bisimulation-Based Reduction of Power System Dynamic Models

    SciTech Connect

    Stankovic, AM; Dukic, SD; Saric, AT

    2015-05-01

    In this paper we propose approximate bisimulation relations and functions for reduction of power system dynamic models in differential- algebraic (descriptor) form. The full-size dynamic model is obtained by linearization of the nonlinear transient stability model. We generalize theoretical results on approximate bisimulation relations and bisimulation functions, originally derived for a class of constrained linear systems, to linear systems in descriptor form. An algorithm for transient stability assessment is proposed and used to determine whether the power system is able to maintain the synchronism after a large disturbance. Two benchmark power systems are used to illustrate the proposed algorithm and to evaluate the applicability of approximate bisimulation relations and bisimulation functions for reduction of the power system dynamic models.

  1. A High Precision Prediction Model Using Hybrid Grey Dynamic Model

    ERIC Educational Resources Information Center

    Li, Guo-Dong; Yamaguchi, Daisuke; Nagai, Masatake; Masuda, Shiro

    2008-01-01

    In this paper, we propose a new prediction analysis model which combines the first order one variable Grey differential equation Model (abbreviated as GM(1,1) model) from grey system theory and time series Autoregressive Integrated Moving Average (ARIMA) model from statistics theory. We abbreviate the combined GM(1,1) ARIMA model as ARGM(1,1)…

  2. Radiation Belt Electron Dynamics: Modeling Atmospheric Losses

    NASA Technical Reports Server (NTRS)

    Selesnick, R. S.

    2003-01-01

    The first year of work on this project has been completed. This report provides a summary of the progress made and the plan for the coming year. Also included with this report is a preprint of an article that was accepted for publication in Journal of Geophysical Research and describes in detail most of the results from the first year of effort. The goal for the first year was to develop a radiation belt electron model for fitting to data from the SAMPEX and Polar satellites that would provide an empirical description of the electron losses into the upper atmosphere. This was largely accomplished according to the original plan (with one exception being that, for reasons described below, the inclusion of the loss cone electrons in the model was deferred). The main concerns at the start were to accurately represent the balance between pitch angle diffusion and eastward drift that determines the dominant features of the low altitude data, and then to accurately convert the model into simulated data based on the characteristics of the particular electron detectors. Considerable effort was devoted to achieving these ends. Once the model was providing accurate results it was applied to data sets selected from appropriate periods in 1997, 1998, and 1999. For each interval of -30 to 60 days, the model parameters were calculated daily, thus providing good short and long term temporal resolution, and for a range of radial locations from L = 2.7 to 3.9. .

  3. Wind turbine control systems: Dynamic model development using system identification and the fast structural dynamics code

    SciTech Connect

    Stuart, J.G.; Wright, A.D.; Butterfield, C.P.

    1996-10-01

    Mitigating the effects of damaging wind turbine loads and responses extends the lifetime of the turbine and, consequently, reduces the associated Cost of Energy (COE). Active control of aerodynamic devices is one option for achieving wind turbine load mitigation. Generally speaking, control system design and analysis requires a reasonable dynamic model of {open_quotes}plant,{close_quotes} (i.e., the system being controlled). This paper extends the wind turbine aileron control research, previously conducted at the National Wind Technology Center (NWTC), by presenting a more detailed development of the wind turbine dynamic model. In prior research, active aileron control designs were implemented in an existing wind turbine structural dynamics code, FAST (Fatigue, Aerodynamics, Structures, and Turbulence). In this paper, the FAST code is used, in conjunction with system identification, to generate a wind turbine dynamic model for use in active aileron control system design. The FAST code is described and an overview of the system identification technique is presented. An aileron control case study is used to demonstrate this modeling technique. The results of the case study are then used to propose ideas for generalizing this technique for creating dynamic models for other wind turbine control applications.

  4. Comparison of Models for Ball Bearing Dynamic Capacity and Life

    NASA Technical Reports Server (NTRS)

    Gupta, Pradeep K.; Oswald, Fred B.; Zaretsky, Erwin V.

    2015-01-01

    Generalized formulations for dynamic capacity and life of ball bearings, based on the models introduced by Lundberg and Palmgren and Zaretsky, have been developed and implemented in the bearing dynamics computer code, ADORE. Unlike the original Lundberg-Palmgren dynamic capacity equation, where the elastic properties are part of the life constant, the generalized formulations permit variation of elastic properties of the interacting materials. The newly updated Lundberg-Palmgren model allows prediction of life as a function of elastic properties. For elastic properties similar to those of AISI 52100 bearing steel, both the original and updated Lundberg-Palmgren models provide identical results. A comparison between the Lundberg-Palmgren and the Zaretsky models shows that at relatively light loads the Zaretsky model predicts a much higher life than the Lundberg-Palmgren model. As the load increases, the Zaretsky model provides a much faster drop off in life. This is because the Zaretsky model is much more sensitive to load than the Lundberg-Palmgren model. The generalized implementation where all model parameters can be varied provides an effective tool for future model validation and enhancement in bearing life prediction capabilities.

  5. A Bayesian state-space formulation of dynamic occupancy models

    USGS Publications Warehouse

    Royle, J. Andrew; Kery, M.

    2007-01-01

    Species occurrence and its dynamic components, extinction and colonization probabilities, are focal quantities in biogeography and metapopulation biology, and for species conservation assessments. It has been increasingly appreciated that these parameters must be estimated separately from detection probability to avoid the biases induced by nondetection error. Hence, there is now considerable theoretical and practical interest in dynamic occupancy models that contain explicit representations of metapopulation dynamics such as extinction, colonization, and turnover as well as growth rates. We describe a hierarchical parameterization of these models that is analogous to the state-space formulation of models in time series, where the model is represented by two components, one for the partially observable occupancy process and another for the observations conditional on that process. This parameterization naturally allows estimation of all parameters of the conventional approach to occupancy models, but in addition, yields great flexibility and extensibility, e.g., to modeling heterogeneity or latent structure in model parameters. We also highlight the important distinction between population and finite sample inference; the latter yields much more precise estimates for the particular sample at hand. Finite sample estimates can easily be obtained using the state-space representation of the model but are difficult to obtain under the conventional approach of likelihood-based estimation. We use R and Win BUGS to apply the model to two examples. In a standard analysis for the European Crossbill in a large Swiss monitoring program, we fit a model with year-specific parameters. Estimates of the dynamic parameters varied greatly among years, highlighting the irruptive population dynamics of that species. In the second example, we analyze route occupancy of Cerulean Warblers in the North American Breeding Bird Survey (BBS) using a model allowing for site

  6. A Bayesian state-space formulation of dynamic occupancy models.

    PubMed

    Royle, J Andrew; Kéry, Marc

    2007-07-01

    Species occurrence and its dynamic components, extinction and colonization probabilities, are focal quantities in biogeography and metapopulation biology, and for species conservation assessments. It has been increasingly appreciated that these parameters must be estimated separately from detection probability to avoid the biases induced by non-detection error. Hence, there is now considerable theoretical and practical interest in dynamic occupancy models that contain explicit representations of metapopulation dynamics such as extinction, colonization, and turnover as well as growth rates. We describe a hierarchical parameterization of these models that is analogous to the state-space formulation of models in time series, where the model is represented by two components, one for the partially observable occupancy process and another for the observations conditional on that process. This parameterization naturally allows estimation of all parameters of the conventional approach to occupancy models, but in addition, yields great flexibility and extensibility, e.g., to modeling heterogeneity or latent structure in model parameters. We also highlight the important distinction between population and finite sample inference; the latter yields much more precise estimates for the particular sample at hand. Finite sample estimates can easily be obtained using the state-space representation of the model but are difficult to obtain under the conventional approach of likelihood-based estimation. We use R and WinBUGS to apply the model to two examples. In a standard analysis for the European Crossbill in a large Swiss monitoring program, we fit a model with year-specific parameters. Estimates of the dynamic parameters varied greatly among years, highlighting the irruptive population dynamics of that species. In the second example, we analyze route occupancy of Cerulean Warblers in the North American Breeding Bird Survey (BBS) using a model allowing for site

  7. Cellular Automata Models of Ring Dynamics

    NASA Astrophysics Data System (ADS)

    Gravner, Janko

    This paper describes three models arising from the theory of excitable media, whose primary visual feature are expanding rings of excitation. Rigorous mathematical results and experimental/computational issues are both addressed. We start with the much-studied Greenberg-Hastings model (GHM) in which the rings are very short-lived, but they do have a transient percolation property. By contrast, in the model we call annihilating nested rings (ANR), excitation centers only gradually lose strength, i.e., each time they become inactive (and then stay so forever) with a fixed probability; we show how the long-term global connectivity properties of the set of excited sites undergo a phase transition. Second part of the paper is devoted to digital boiling (DB) in which new rings spontaneously appear at rested sites with a positive probability. We focus on such (related) issues as convergence to equilibrium, equilibrium excitation level and success of the basic coupling.

  8. Cellular automata models of ring dynamics

    SciTech Connect

    Gravner, J.

    1996-12-01

    This paper describes three models arising from the theory of excitable media, whose primary visual feature are expanding rings of excitation. Rigorous mathematical results and experimental/computational issues are both addressed. We start with the much-studied Greenberg-Hastings model (GHM) in which the rings are very short-lived, but they do have a transient percolation property. By contrast, in the model we call annihilating nested rings (ANR), excitation centers only gradually lose strength, i.e., each time they become inactive (and then stay so forever) with a fixed probability; we show how the long-term global connectivity properties of the set of excited sites undergo a phase transition. Second part of the paper is devoted to digital boiling (DB) in which new rings spontaneously appear at rested sites with a positive probability. We focus on such (related) issues as convergence to equilibrium, equilibrium excitation level and success of the basic coupling.

  9. Dynamic energy models and carbon mitigation policies

    NASA Astrophysics Data System (ADS)

    Tilley, Luke A.

    In this dissertation I examine a specific class of energy models and their implications for carbon mitigation policies. The class of models includes a production function capable of reproducing the empirically observed phenomenon of short run rigidity of energy use in response to energy price changes and long run exibility of energy use in response to energy price changes. I use a theoretical model, parameterized using empirical data, to simulate economic performance under several tax regimes where taxes are levied on capital income, investment, and energy. I also investigate transitions from one tax regime to another. I find that energy taxes intended to reduce energy use can successfully achieve those goals with minimal or even positive impacts on macroeconomic performance. But the transition paths to new steady states are lengthy, making political commitment to such policies very challenging.

  10. Application of the GRC Stirling Convertor System Dynamic Model

    NASA Technical Reports Server (NTRS)

    Regan, Timothy F.; Lewandowski, Edward J.; Schreiber, Jeffrey G. (Technical Monitor)

    2004-01-01

    The GRC Stirling Convertor System Dynamic Model (SDM) has been developed to simulate dynamic performance of power systems incorporating free-piston Stirling convertors. This paper discusses its use in evaluating system dynamics and other systems concerns. Detailed examples are provided showing the use of the model in evaluation of off-nominal operating conditions. The many degrees of freedom in both the mechanical and electrical domains inherent in the Stirling convertor and the nonlinear dynamics make simulation an attractive analysis tool in conjunction with classical analysis. Application of SDM in studying the relationship of the size of the resonant circuit quality factor (commonly referred to as Q) in the various resonant mechanical and electrical sub-systems is discussed.

  11. Dynamical Model for the Toroidal Sporadic Meteors

    NASA Astrophysics Data System (ADS)

    Pokorný, Petr; Vokrouhlický, David; Nesvorný, David; Campbell-Brown, Margaret; Brown, Peter

    2014-07-01

    More than a decade of radar operations by the Canadian Meteor Orbit Radar have allowed both young and moderately old streams to be distinguished from the dispersed sporadic background component. The latter has been categorized according to broad radiant regions visible to Earth-based observers into three broad classes: the helion and anti-helion source, the north and south apex sources, and the north and south toroidal sources (and a related arc structure). The first two are populated mainly by dust released from Jupiter-family comets and new comets. Proper modeling of the toroidal sources has not to date been accomplished. Here, we develop a steady-state model for the toroidal source of the sporadic meteoroid complex, compare our model with the available radar measurements, and investigate a contribution of dust particles from our model to the whole population of sporadic meteoroids. We find that the long-term stable part of the toroidal particles is mainly fed by dust released by Halley type (long period) comets (HTCs). Our synthetic model reproduces most of the observed features of the toroidal particles, including the most troublesome low-eccentricity component, which is due to a combination of two effects: particles' ability to decouple from Jupiter and circularize by the Poynting-Robertson effect, and large collision probability for orbits similar to that of the Earth. Our calibrated model also allows us to estimate the total mass of the HTC-released dust in space and check the flux necessary to maintain the cloud in a steady state.

  12. Dynamical model for the toroidal sporadic meteors

    SciTech Connect

    Pokorný, Petr; Vokrouhlický, David; Nesvorný, David; Campbell-Brown, Margaret; Brown, Peter E-mail: vokrouhl@cesnet.cz E-mail: margaret.campbell@uwo.ca

    2014-07-01

    More than a decade of radar operations by the Canadian Meteor Orbit Radar have allowed both young and moderately old streams to be distinguished from the dispersed sporadic background component. The latter has been categorized according to broad radiant regions visible to Earth-based observers into three broad classes: the helion and anti-helion source, the north and south apex sources, and the north and south toroidal sources (and a related arc structure). The first two are populated mainly by dust released from Jupiter-family comets and new comets. Proper modeling of the toroidal sources has not to date been accomplished. Here, we develop a steady-state model for the toroidal source of the sporadic meteoroid complex, compare our model with the available radar measurements, and investigate a contribution of dust particles from our model to the whole population of sporadic meteoroids. We find that the long-term stable part of the toroidal particles is mainly fed by dust released by Halley type (long period) comets (HTCs). Our synthetic model reproduces most of the observed features of the toroidal particles, including the most troublesome low-eccentricity component, which is due to a combination of two effects: particles' ability to decouple from Jupiter and circularize by the Poynting-Robertson effect, and large collision probability for orbits similar to that of the Earth. Our calibrated model also allows us to estimate the total mass of the HTC-released dust in space and check the flux necessary to maintain the cloud in a steady state.

  13. Delay driven spatiotemporal chaos in single species population dynamics models.

    PubMed

    Jankovic, Masha; Petrovskii, Sergei; Banerjee, Malay

    2016-08-01

    Questions surrounding the prevalence of complex population dynamics form one of the central themes in ecology. Limit cycles and spatiotemporal chaos are examples that have been widely recognised theoretically, although their importance and applicability to natural populations remains debatable. The ecological processes underlying such dynamics are thought to be numerous, though there seems to be consent as to delayed density dependence being one of the main driving forces. Indeed, time delay is a common feature of many ecological systems and can significantly influence population dynamics. In general, time delays may arise from inter- and intra-specific trophic interactions or population structure, however in the context of single species populations they are linked to more intrinsic biological phenomena such as gestation or resource regeneration. In this paper, we consider theoretically the spatiotemporal dynamics of a single species population using two different mathematical formulations. Firstly, we revisit the diffusive logistic equation in which the per capita growth is a function of some specified delayed argument. We then modify the model by incorporating a spatial convolution which results in a biologically more viable integro-differential model. Using the combination of analytical and numerical techniques, we investigate the effect of time delay on pattern formation. In particular, we show that for sufficiently large values of time delay the system's dynamics are indicative to spatiotemporal chaos. The chaotic dynamics arising in the wake of a travelling population front can be preceded by either a plateau corresponding to dynamical stabilisation of the unstable equilibrium or by periodic oscillations.

  14. Critical clusters and efficient dynamics for frustrated spin models

    NASA Astrophysics Data System (ADS)

    Cataudella, V.; Franzese, G.; Nicodemi, M.; Scala, A.; Coniglio, A.

    1994-03-01

    A general method to find, in a systematic way, efficient Monte Carlo cluster dynamics among the vast class of dynamics introduced by Kandel et al. [Phys. Rev. Lett. 65, 941 (1990)] is proposed. The method is successfully applied to a class of frustrated two-dimensional Ising systems. In the case of the fully frustrated model, we also find the intriguing result that critical clusters consist of self-avoiding walk at the θ point.

  15. Test results from a dynamic model dynaflex rotor

    NASA Technical Reports Server (NTRS)

    Niebanck, C. F.; Goodman, R. K.

    1985-01-01

    A one-fifth scale dynamic model of the Sikorsky Dynaflex rotor was tested in hover and in forward flight conditions in a wind tunnel. The Dynaflex rotor features an advanced composite structure which flexes to provide a constant speed universal joint action. Testing concentrated on confirming that the stability and dynamic response of the rotor were satisfactory. Lift conditions of up to .11 Ct/sigma and advance ratios as high as .46 were reached. Vibratory loads were compared to those of articulated rotors. The Dynaflex rotor concept appears to be a practical concept from the standpoint of dynamic response and stability.

  16. Slip complexity in dynamic models of earthquake faults.

    PubMed Central

    Langer, J S; Carlson, J M; Myers, C R; Shaw, B E

    1996-01-01

    We summarize recent evidence that models of earthquake faults with dynamically unstable friction laws but no externally imposed heterogeneities can exhibit slip complexity. Two models are described here. The first is a one-dimensional model with velocity-weakening stick-slip friction; the second is a two-dimensional elastodynamic model with slip-weakening friction. Both exhibit small-event complexity and chaotic sequences of large characteristic events. The large events in both models are composed of Heaton pulses. We argue that the key ingredients of these models are reasonably accurate representations of the properties of real faults. PMID:11607671

  17. Long Term Modelling of Permafrost Dynamics

    DTIC Science & Technology

    1994-07-01

    REFERENCES Albert, M.R. (1984). Modelling two-dimensional freezing using transfinite mappings and a moving mesh finite element technique. Int. J. Numer... transfinite mappings’. Int. J. Numer. Methods Eng., 23, 591- 607. Burt, T.P and P.J. Williams (1976). ’Hydraulic conductivity in frozen soils.’ Earth Surf

  18. A dynamic model of human physiology

    NASA Astrophysics Data System (ADS)

    Green, Melissa; Kaplan, Carolyn; Oran, Elaine; Boris, Jay

    2010-11-01

    To study the systems-level transport in the human body, we develop the Computational Man (CMAN): a set of one-dimensional unsteady elastic flow simulations created to model a variety of coupled physiological systems including the circulatory, respiratory, excretory, and lymphatic systems. The model systems are collapsed from three spatial dimensions and time to one spatial dimension and time by assuming axisymmetric vessel geometry and a parabolic velocity profile across the cylindrical vessels. To model the actions of a beating heart or expanding lungs, the flow is driven by user-defined changes to the equilibrium areas of the elastic vessels. The equations are then iteratively solved for pressure, area, and average velocity. The model is augmented with valves and contractions to resemble the biological structure of the different systems. CMAN will be used to track material transport throughout the human body for diagnostic and predictive purposes. Parameters will be adjustable to match those of individual patients. Validation of CMAN has used both higher-dimensional simulations of similar geometries and benchmark measurement from medical literature.

  19. Dynamic modeling of lower hybrid current drive

    SciTech Connect

    Ignat, D.W.; Valeo, E.J.; Jardin, S.C.

    1993-10-01

    A computational model of lower hybrid current drive in the presence of an electric field is described and some results are given. Details of geometry, plasma profiles and circuit equations are treated carefully. Two-dimensional velocity space effects are approximated in a one-dimensional Fokker-Planck treatment.

  20. A nonlinear model for DNA dynamics

    SciTech Connect

    Muto, V.; Scott, A.C.; Christiansen, P.L.

    1989-07-01

    In this paper the thermal equilibrium number of solitons in DNA as a function of absolute temperature and the number of base pairs is calculated. These calculations are effected by modeling DNA as a Toda lattice with parameters chosen to match experimentally measured properties of DNA. It is found that a significant number of solitons is generated at physiological temperature. 23 refs., 2 figs.

  1. MULTIDIMENSIONAL MODELING OF CORONAL RAIN DYNAMICS

    SciTech Connect

    Fang, X.; Xia, C.; Keppens, R.

    2013-07-10

    We present the first multidimensional, magnetohydrodynamic simulations that capture the initial formation and long-term sustainment of the enigmatic coronal rain phenomenon. We demonstrate how thermal instability can induce a spectacular display of in situ forming blob-like condensations which then start their intimate ballet on top of initially linear force-free arcades. Our magnetic arcades host a chromospheric, transition region, and coronal plasma. Following coronal rain dynamics for over 80 minutes of physical time, we collect enough statistics to quantify blob widths, lengths, velocity distributions, and other characteristics which directly match modern observational knowledge. Our virtual coronal rain displays the deformation of blobs into V-shaped features, interactions of blobs due to mostly pressure-mediated levitations, and gives the first views of blobs that evaporate in situ or are siphoned over the apex of the background arcade. Our simulations pave the way for systematic surveys of coronal rain showers in true multidimensional settings to connect parameterized heating prescriptions with rain statistics, ultimately allowing us to quantify the coronal heating input.

  2. Multidimensional Modeling of Coronal Rain Dynamics

    NASA Astrophysics Data System (ADS)

    Fang, X.; Xia, C.; Keppens, R.

    2013-07-01

    We present the first multidimensional, magnetohydrodynamic simulations that capture the initial formation and long-term sustainment of the enigmatic coronal rain phenomenon. We demonstrate how thermal instability can induce a spectacular display of in situ forming blob-like condensations which then start their intimate ballet on top of initially linear force-free arcades. Our magnetic arcades host a chromospheric, transition region, and coronal plasma. Following coronal rain dynamics for over 80 minutes of physical time, we collect enough statistics to quantify blob widths, lengths, velocity distributions, and other characteristics which directly match modern observational knowledge. Our virtual coronal rain displays the deformation of blobs into V-shaped features, interactions of blobs due to mostly pressure-mediated levitations, and gives the first views of blobs that evaporate in situ or are siphoned over the apex of the background arcade. Our simulations pave the way for systematic surveys of coronal rain showers in true multidimensional settings to connect parameterized heating prescriptions with rain statistics, ultimately allowing us to quantify the coronal heating input.

  3. Large Scale, High Resolution, Mantle Dynamics Modeling

    NASA Astrophysics Data System (ADS)

    Geenen, T.; Berg, A. V.; Spakman, W.

    2007-12-01

    To model the geodynamic evolution of plate convergence, subduction and collision and to allow for a connection to various types of observational data, geophysical, geodetical and geological, we developed a 4D (space-time) numerical mantle convection code. The model is based on a spherical 3D Eulerian fem model, with quadratic elements, on top of which we constructed a 3D Lagrangian particle in cell(PIC) method. We use the PIC method to transport material properties and to incorporate a viscoelastic rheology. Since capturing small scale processes associated with localization phenomena require a high resolution, we spend a considerable effort on implementing solvers suitable to solve for models with over 100 million degrees of freedom. We implemented Additive Schwartz type ILU based methods in combination with a Krylov solver, GMRES. However we found that for problems with over 500 thousend degrees of freedom the convergence of the solver degraded severely. This observation is known from the literature [Saad, 2003] and results from the local character of the ILU preconditioner resulting in a poor approximation of the inverse of A for large A. The size of A for which ILU is no longer usable depends on the condition of A and on the amount of fill in allowed for the ILU preconditioner. We found that for our problems with over 5×105 degrees of freedom convergence became to slow to solve the system within an acceptable amount of walltime, one minute, even when allowing for considerable amount of fill in. We also implemented MUMPS and found good scaling results for problems up to 107 degrees of freedom for up to 32 CPU¡¯s. For problems with over 100 million degrees of freedom we implemented Algebraic Multigrid type methods (AMG) from the ML library [Sala, 2006]. Since multigrid methods are most effective for single parameter problems, we rebuild our model to use the SIMPLE method in the Stokes solver [Patankar, 1980]. We present scaling results from these solvers for 3D

  4. Spatially random models, estimation theory, and robot arm dynamics

    NASA Technical Reports Server (NTRS)

    Rodriguez, G.

    1987-01-01

    Spatially random models provide an alternative to the more traditional deterministic models used to describe robot arm dynamics. These alternative models can be used to establish a relationship between the methodologies of estimation theory and robot dynamics. A new class of algorithms for many of the fundamental robotics problems of inverse and forward dynamics, inverse kinematics, etc. can be developed that use computations typical in estimation theory. The algorithms make extensive use of the difference equations of Kalman filtering and Bryson-Frazier smoothing to conduct spatial recursions. The spatially random models are very easy to describe and are based on the assumption that all of the inertial (D'Alembert) forces in the system are represented by a spatially distributed white-noise model. The models can also be used to generate numerically the composite multibody system inertia matrix. This is done without resorting to the more common methods of deterministic modeling involving Lagrangian dynamics, Newton-Euler equations, etc. These methods make substantial use of human knowledge in derivation and minipulation of equations of motion for complex mechanical systems.

  5. Estimation of Unsteady Aerodynamic Models from Dynamic Wind Tunnel Data

    NASA Technical Reports Server (NTRS)

    Murphy, Patrick; Klein, Vladislav

    2011-01-01

    Demanding aerodynamic modelling requirements for military and civilian aircraft have motivated researchers to improve computational and experimental techniques and to pursue closer collaboration in these areas. Model identification and validation techniques are key components for this research. This paper presents mathematical model structures and identification techniques that have been used successfully to model more general aerodynamic behaviours in single-degree-of-freedom dynamic testing. Model parameters, characterizing aerodynamic properties, are estimated using linear and nonlinear regression methods in both time and frequency domains. Steps in identification including model structure determination, parameter estimation, and model validation, are addressed in this paper with examples using data from one-degree-of-freedom dynamic wind tunnel and water tunnel experiments. These techniques offer a methodology for expanding the utility of computational methods in application to flight dynamics, stability, and control problems. Since flight test is not always an option for early model validation, time history comparisons are commonly made between computational and experimental results and model adequacy is inferred by corroborating results. An extension is offered to this conventional approach where more general model parameter estimates and their standard errors are compared.

  6. Multi-Topic Tracking Model for dynamic social network

    NASA Astrophysics Data System (ADS)

    Li, Yuhua; Liu, Changzheng; Zhao, Ming; Li, Ruixuan; Xiao, Hailing; Wang, Kai; Zhang, Jun

    2016-07-01

    The topic tracking problem has attracted much attention in the last decades. However, existing approaches rarely consider network structures and textual topics together. In this paper, we propose a novel statistical model based on dynamic bayesian network, namely Multi-Topic Tracking Model for Dynamic Social Network (MTTD). It takes influence phenomenon, selection phenomenon, document generative process and the evolution of textual topics into account. Specifically, in our MTTD model, Gibbs Random Field is defined to model the influence of historical status of users in the network and the interdependency between them in order to consider the influence phenomenon. To address the selection phenomenon, a stochastic block model is used to model the link generation process based on the users' interests to topics. Probabilistic Latent Semantic Analysis (PLSA) is used to describe the document generative process according to the users' interests. Finally, the dependence on the historical topic status is also considered to ensure the continuity of the topic itself in topic evolution model. Expectation Maximization (EM) algorithm is utilized to estimate parameters in the proposed MTTD model. Empirical experiments on real datasets show that the MTTD model performs better than Popular Event Tracking (PET) and Dynamic Topic Model (DTM) in generalization performance, topic interpretability performance, topic content evolution and topic popularity evolution performance.

  7. Dynamical phase space from an SO (d ,d ) matrix model

    NASA Astrophysics Data System (ADS)

    Chatzistavrakidis, Athanasios

    2014-12-01

    It is shown that a matrix model with SO (d ,d ) global symmetry is derived from a generalized Yang-Mills theory on the standard Courant algebroid. This model keeps all the positive features of the well-studied type IIB matrix model, and it has many additional welcome properties. We show that it not only captures the dynamics of spacetime, but it should be associated with the dynamics of phase space. This is supported by a large set of classical solutions of its equations of motion, which corresponds to phase spaces of noncommutative curved manifolds and points to a new mechanism of emergent gravity. The model possesses a symmetry that exchanges positions and momenta, in analogy to quantum mechanics. It is argued that the emergence of phase space in the model is an essential feature for the investigation of the precise relation of matrix models to string theory and quantum gravity.

  8. A dynamic physicochemical model for chemical phosphorus removal.

    PubMed

    Hauduc, H; Takács, I; Smith, S; Szabo, A; Murthy, S; Daigger, G T; Spérandio, M

    2015-04-15

    A dynamic physico-chemical model for chemical phosphorus removal in wastewater is presented as a tool to optimize chemical dosing simultaneously while ensuring compliant effluent phosphorus concentration. This new model predicts the kinetic and stoichiometric variable processes of precipitation of hydrous ferric oxides (HFO), phosphates adsorption and co-precipitation. It is combined with chemical equilibrium and physical precipitation reactions in order to model observed bulk dynamics in terms of pH. The model is calibrated and validated based on previous studies and experimental data from Smith et al. (2008) and Szabo et al. (2008) as a first step for full-plant implementation. The simulation results show that the structure of the model describes adequately the mechanisms of adsorption and co-precipitation of phosphate species onto HFO and that the model is robust under various experimental conditions.

  9. Software life cycle dynamic simulation model: The organizational performance submodel

    NASA Technical Reports Server (NTRS)

    Tausworthe, Robert C.

    1985-01-01

    The submodel structure of a software life cycle dynamic simulation model is described. The software process is divided into seven phases, each with product, staff, and funding flows. The model is subdivided into an organizational response submodel, a management submodel, a management influence interface, and a model analyst interface. The concentration here is on the organizational response model, which simulates the performance characteristics of a software development subject to external and internal influences. These influences emanate from two sources: the model analyst interface, which configures the model to simulate the response of an implementing organization subject to its own internal influences, and the management submodel that exerts external dynamic control over the production process. A complete characterization is given of the organizational response submodel in the form of parameterized differential equations governing product, staffing, and funding levels. The parameter values and functions are allocated to the two interfaces.

  10. Developing Soil Models for Dynamic Impact Simulations

    NASA Technical Reports Server (NTRS)

    Fasanella, Edwin L.; Lyle, Karen H.; Jackson, Karen E.

    2009-01-01

    This paper describes fundamental soils characterization work performed at NASA Langley Research Center in support of the Subsonic Rotary Wing (SRW) Aeronautics Program and the Orion Landing System (LS) Advanced Development Program (ADP). LS-DYNA(Registered TradeMark)1 soil impact model development and test-analysis correlation results are presented for: (1) a 38-ft/s vertical drop test of a composite fuselage section, outfitted with four blocks of deployable energy absorbers (DEA), onto sand, and (2) a series of impact tests of a 1/2-scale geometric boilerplate Orion capsule onto soil. In addition, the paper will discuss LS-DYNA contact analysis at the soil/structure interface, methods used to estimate frictional forces, and the sensitivity of the model to density, moisture, and compaction.

  11. Activity of a social dynamics model

    NASA Astrophysics Data System (ADS)

    Reia, Sandro M.; Neves, Ubiraci P. C.

    2015-10-01

    Axelrod's model was proposed to study interactions between agents and the formation of cultural domains. It presents a transition from a monocultural to a multicultural steady state which has been studied in the literature by evaluation of the relative size of the largest cluster. In this article, we propose new measurements based on the concept of activity per agent to study the Axelrod's model on the square lattice. We show that the variance of system activity can be used to indicate the critical points of the transition. Furthermore the frequency distribution of the system activity is able to show a coexistence of phases typical of a first order phase transition. Finally, we verify a power law dependence between cluster activity and cluster size for multicultural steady state configurations at the critical point.

  12. A System Dynamic Model of Leader Emergence

    DTIC Science & Technology

    2008-03-01

    group decision making across all cultures. Leader emergence occurs through interaction; it is a collective process by which one individual is selected...questions. Task and affect network each had two questions. Task network questions asked how much time is spent on work related tasks with each...and in-degree centrality, the model focused on betweenness centrality and the contribution of extraversion’s affect on interaction, and self

  13. Nonlinear modeling of an aerospace object dynamics

    NASA Astrophysics Data System (ADS)

    Davydov, I. E.; Davydov, E. I.

    2017-01-01

    Here are presented the scientific results, obtained by motion modeling of complicated technical systems of aerospace equipment with consideration of nonlinearities. Computerized panel that allows to measure mutual influence of the system's motion and stabilization device with consideration of its real characteristics has been developed. Analysis of motion stability of a system in general has been carried out and time relationships of the system's motion taking in account nonlinearities are presented.

  14. A connectionist model for dynamic control

    NASA Technical Reports Server (NTRS)

    Whitfield, Kevin C.; Goodall, Sharon M.; Reggia, James A.

    1989-01-01

    The application of a connectionist modeling method known as competition-based spreading activation to a camera tracking task is described. The potential is explored for automation of control and planning applications using connectionist technology. The emphasis is on applications suitable for use in the NASA Space Station and in related space activities. The results are quite general and could be applicable to control systems in general.

  15. Modeling Gas Dynamics in California Sea Lions

    DTIC Science & Technology

    2015-09-30

    for diving California sea lions. Aim 1: Pressure-volume (compliance) loops from excised California sea lions lungs and upper airways (trachea...were used to update the parameters that estimate the pulmonary shunt during diving. The compliance estimates were related to lung and tracheal volumes...during compression to pulmonary shunt (Bostrom, Fahlman et al. 2008). In the existing model, the compliance parameter for the lung was for

  16. Successional state dynamics: a novel approach to modeling nonequilibrium foodweb dynamics.

    PubMed

    Klausmeier, C A

    2010-02-21

    Communities and ecosystems are often far from equilibrium, but our understanding of nonequilibrium dynamics has been hampered by a paucity of analytical tools. Here I describe a novel approach to modeling seasonally forced food webs, called "successional state dynamics" (SSD). It is applicable to communities where species dynamics are fast relative to the external forcing, such as plankton and other microbes, diseases, and some insect communities. The approach treats succession as a series of state transitions driven by both the internal dynamics of species interactions and external forcing. First, I motivate the approach with numerical solutions of a seasonally forced predator-prey model. Second, I describe how to set up and analyze an SSD model. Finally, I apply the techniques to three additional models of two-species interactions: resource competition (r-K selection), facilitation, and flip-flop competition (where the competitive hierarchy alternates over time). This approach allows easy and thorough exploration of how dynamics depend on the environmental forcing regime, and uncovers unexpected phenomena such as multiple stable annual trajectories and year-to-year irregularity in successional trajectories (chaos).

  17. Modeling of the Bosphorus exchange flow dynamics

    NASA Astrophysics Data System (ADS)

    Sözer, Adil; Özsoy, Emin

    2017-01-01

    The fundamental hydrodynamic behavior of the Bosphorus Strait is investigated through a numerical modeling study using alternative configurations of idealized or realistic geometry. Strait geometry and basin stratification conditions allow for hydraulic controls and are ideally suited to support the maximal-exchange regime, which determines the rate of exchange of waters originating from the adjacent Black and Mediterranean Seas for a given net transport. Steady-state hydraulic controls are demonstrated by densimetric Froude number calculations under layered flow approximations when corrections are applied to account for high velocity shears typically observed in the Bosphorus. Analyses of the model results reveal many observed features of the strait, including critical transitions at hydraulic controls and dissipation by turbulence and hydraulic jumps. It is found that the solution depends on initialization, especially with respect to the basin initial conditions. Significant differences between the controlled maximal-exchange and drowned solutions suggest that a detailed modeling implementation involving coupling with adjacent basins needs to take full account of the Bosphorus Strait in terms of the physical processes to be resolved.

  18. Dynamic Metabolic Model Building Based on the Ensemble Modeling Approach

    SciTech Connect

    Liao, James C.

    2016-10-01

    Ensemble modeling of kinetic systems addresses the challenges of kinetic model construction, with respect to parameter value selection, and still allows for the rich insights possible from kinetic models. This project aimed to show that constructing, implementing, and analyzing such models is a useful tool for the metabolic engineering toolkit, and that they can result in actionable insights from models. Key concepts are developed and deliverable publications and results are presented.

  19. Characterizing and modeling the dynamics of online popularity.

    PubMed

    Ratkiewicz, Jacob; Fortunato, Santo; Flammini, Alessandro; Menczer, Filippo; Vespignani, Alessandro

    2010-10-08

    Online popularity has an enormous impact on opinions, culture, policy, and profits. We provide a quantitative, large scale, temporal analysis of the dynamics of online content popularity in two massive model systems: the Wikipedia and an entire country's Web space. We find that the dynamics of popularity are characterized by bursts, displaying characteristic features of critical systems such as fat-tailed distributions of magnitude and interevent time. We propose a minimal model combining the classic preferential popularity increase mechanism with the occurrence of random popularity shifts due to exogenous factors. The model recovers the critical features observed in the empirical analysis of the systems analyzed here, highlighting the key factors needed in the description of popularity dynamics.

  20. Dynamic route choice model of large-scale traffic network

    SciTech Connect

    Boyce, D.W.; Lee, D.H.; Janson, B.N.; Berka, S.

    1997-08-01

    Application and extensions of a dynamic network equilibrium model to the Advanced Driver and Vehicle Advisory Navigation Concept (ADVANCE) Network are described in this paper. ADVANCE is a dynamic route guidance field test designed for 800 km{sup 2} in the northwestern suburbs of Chicago. The dynamic route choice model employed in this paper is solved efficiently by a modified version of Janson`s DYMOD algorithm. Realistic traffic engineering-based link delay functions, instead of the simplistic Bureau of Public Roads (BPR) function, are used to estimate link travel times and intersection delays for most types of links and intersections. Further, an expanded intersection representation is utilized, resulting in a network of nearly 23,000 links and 10,000 nodes. Time-dependent link flows, travel times, speeds and queue spillbacks are generated for the ADVANCE Network. The model was solved on a CONVEX-C3880. Convergence and computational results are presented and analyzed.

  1. Modeling Human Dynamics of Face-to-Face Interaction Networks

    NASA Astrophysics Data System (ADS)

    Starnini, Michele; Baronchelli, Andrea; Pastor-Satorras, Romualdo

    2013-04-01

    Face-to-face interaction networks describe social interactions in human gatherings, and are the substrate for processes such as epidemic spreading and gossip propagation. The bursty nature of human behavior characterizes many aspects of empirical data, such as the distribution of conversation lengths, of conversations per person, or of interconversation times. Despite several recent attempts, a general theoretical understanding of the global picture emerging from data is still lacking. Here we present a simple model that reproduces quantitatively most of the relevant features of empirical face-to-face interaction networks. The model describes agents that perform a random walk in a two-dimensional space and are characterized by an attractiveness whose effect is to slow down the motion of people around them. The proposed framework sheds light on the dynamics of human interactions and can improve the modeling of dynamical processes taking place on the ensuing dynamical social networks.

  2. An Evolutionary Dynamics Model Adapted to Eusocial Insects

    PubMed Central

    van Oudenhove, Louise; Cerdá, Xim; Bernstein, Carlos

    2013-01-01

    This study aims to better understand the evolutionary processes allowing species coexistence in eusocial insect communities. We develop a mathematical model that applies adaptive dynamics theory to the evolutionary dynamics of eusocial insects, focusing on the colony as the unit of selection. The model links long-term evolutionary processes to ecological interactions among colonies and seasonal worker production within the colony. Colony population dynamics is defined by both worker production and colony reproduction. Random mutations occur in strategies, and mutant colonies enter the community. The interactions of colonies at the ecological timescale drive the evolution of strategies at the evolutionary timescale by natural selection. This model is used to study two specific traits in ants: worker body size and the degree of collective foraging. For both traits, trade-offs in competitive ability and other fitness components allows to determine conditions in which selection becomes disruptive. Our results illustrate that asymmetric competition underpins diversity in ant communities. PMID:23469162

  3. An evolutionary dynamics model adapted to eusocial insects.

    PubMed

    van Oudenhove, Louise; Cerdá, Xim; Bernstein, Carlos

    2013-01-01

    This study aims to better understand the evolutionary processes allowing species coexistence in eusocial insect communities. We develop a mathematical model that applies adaptive dynamics theory to the evolutionary dynamics of eusocial insects, focusing on the colony as the unit of selection. The model links long-term evolutionary processes to ecological interactions among colonies and seasonal worker production within the colony. Colony population dynamics is defined by both worker production and colony reproduction. Random mutations occur in strategies, and mutant colonies enter the community. The interactions of colonies at the ecological timescale drive the evolution of strategies at the evolutionary timescale by natural selection. This model is used to study two specific traits in ants: worker body size and the degree of collective foraging. For both traits, trade-offs in competitive ability and other fitness components allows to determine conditions in which selection becomes disruptive. Our results illustrate that asymmetric competition underpins diversity in ant communities.

  4. Torsional dynamics of steerable needles: modeling and fluoroscopic guidance.

    PubMed

    Swensen, John P; Lin, MingDe; Okamura, Allison M; Cowan, Noah J

    2014-11-01

    Needle insertions underlie a diversity of medical interventions. Steerable needles provide a means by which to enhance existing needle-based interventions and facilitate new ones. Tip-steerable needles follow a curved path and can be steered by twisting the needle base during insertion, but this twisting excites torsional dynamics that introduce a discrepancy between the base and tip twist angles. Here, we model the torsional dynamics of a flexible rod-such as a tip-steerable needle-during subsurface insertion and develop a new controller based on the model. The torsional model incorporates time-varying mode shapes to capture the changing boundary conditions inherent during insertion. Numerical simulations and physical experiments using two distinct setups-stereo camera feedback in semitransparent artificial tissue and feedback control with real-time X-ray imaging in optically opaque artificial tissue-demonstrate the need to account for torsional dynamics in control of the needle tip.

  5. Modeling seasonal interactions in the population dynamics of migratory birds

    USGS Publications Warehouse

    Runge, M.C.; Marra, P.P.; Greenberg, Russell; Marra, Peter P.

    2005-01-01

    Understanding the population dynamics of migratory birds requires understanding the relevant biological events that occur during breeding, migratory, and overwintering periods. The few available population models for passerine birds focus on breeding-season events, disregard or oversimplify events during nonbreeding periods, and ignore interactions that occur between periods of the annual cycle. Identifying and explicitly incorporating seasonal interactions into population models for migratory birds could provide important insights about when population limitation actually occurs in the annual cycle. We present a population model for the annual cycle of a migratory bird, based on the American Redstart (Setophaga ruticilla) but more generally applicable, that examines the importance of seasonal interactions by incorporating: (1) density dependence during the breeding and winter seasons, (2) a carry-over effect of winter habitat on breeding-season productivity, and (3) the effects of behavioral dominance on seasonal and habitat specific demographic rates. First, we show that habitat availability on both the wintering and breeding grounds can strongly affect equilibrium population size and sex ratio. Second, sex ratio dynamics, as mediated by behavioral dominance, can affect all other aspects of population dynamics. Third, carry-over effects can be strong, especially when winter events are limiting. These results suggest that understanding the population dynamics of migratory birds may require more consideration of the seasonal interactions induced by carry-over effects and density dependence in multiple seasons. This model provides a framework in which to explore more fully these seasonal dynamics and a context for estimation of life history parameters.

  6. Minimal model for collective kinetochore–microtubule dynamics

    PubMed Central

    Banigan, Edward J.; Chiou, Kevin K.; Ballister, Edward R.; Mayo, Alyssa M.; Lampson, Michael A.; Liu, Andrea J.

    2015-01-01

    Chromosome segregation during cell division depends on interactions of kinetochores with dynamic microtubules (MTs). In many eukaryotes, each kinetochore binds multiple MTs, but the collective behavior of these coupled MTs is not well understood. We present a minimal model for collective kinetochore–MT dynamics, based on in vitro measurements of individual MTs and their dependence on force and kinetochore phosphorylation by Aurora B kinase. For a system of multiple MTs connected to the same kinetochore, the force–velocity relation has a bistable regime with two possible steady-state velocities: rapid shortening or slow growth. Bistability, combined with the difference between the growing and shrinking speeds, leads to center-of-mass and breathing oscillations in bioriented sister kinetochore pairs. Kinetochore phosphorylation shifts the bistable region to higher tensions, so that only the rapidly shortening state is stable at low tension. Thus, phosphorylation leads to error correction for kinetochores that are not under tension. We challenged the model with new experiments, using chemically induced dimerization to enhance Aurora B activity at metaphase kinetochores. The model suggests that the experimentally observed disordering of the metaphase plate occurs because phosphorylation increases kinetochore speeds by biasing MTs to shrink. Our minimal model qualitatively captures certain characteristic features of kinetochore dynamics, illustrates how biochemical signals such as phosphorylation may regulate the dynamics, and provides a theoretical framework for understanding other factors that control the dynamics in vivo. PMID:26417109

  7. Equation-free mechanistic ecosystem forecasting using empirical dynamic modeling

    PubMed Central

    Ye, Hao; Beamish, Richard J.; Glaser, Sarah M.; Grant, Sue C. H.; Hsieh, Chih-hao; Richards, Laura J.; Schnute, Jon T.; Sugihara, George

    2015-01-01

    It is well known that current equilibrium-based models fall short as predictive descriptions of natural ecosystems, and particularly of fisheries systems that exhibit nonlinear dynamics. For example, model parameters assumed to be fixed constants may actually vary in time, models may fit well to existing data but lack out-of-sample predictive skill, and key driving variables may be misidentified due to transient (mirage) correlations that are common in nonlinear systems. With these frailties, it is somewhat surprising that static equilibrium models continue to be widely used. Here, we examine empirical dynamic modeling (EDM) as an alternative to imposed model equations and that accommodates both nonequilibrium dynamics and nonlinearity. Using time series from nine stocks of sockeye salmon (Oncorhynchus nerka) from the Fraser River system in British Columbia, Canada, we perform, for the the first time to our knowledge, real-data comparison of contemporary fisheries models with equivalent EDM formulations that explicitly use spawning stock and environmental variables to forecast recruitment. We find that EDM models produce more accurate and precise forecasts, and unlike extensions of the classic Ricker spawner–recruit equation, they show significant improvements when environmental factors are included. Our analysis demonstrates the strategic utility of EDM for incorporating environmental influences into fisheries forecasts and, more generally, for providing insight into how environmental factors can operate in forecast models, thus paving the way for equation-free mechanistic forecasting to be applied in management contexts. PMID:25733874

  8. Dynamic online sewer modelling in Helsingborg.

    PubMed

    Hernebring, C; Jönsson, L E; Thorén, U B; Møller, A

    2002-01-01

    Within the last decade, the sewer system in Helsingborg, Sweden has been rehabilitated in many ways along with the reconstruction of the WWTP Oresundsverket in order to obtain a high degree of nitrogen and phosphorus removal. In that context a holistic view has been applied in order to optimise the corrective measures as seen from the effects in the receiving waters. A sewer catchment model has been used to evaluate several operation strategies and the effect of introducing RTC. Recently, a MOUSE ONLINE system was installed. In this phase the objective is to establish a stable communication with the SCADA system and to generate short-term flow forecasts.

  9. Dynamic rupture in a damage-breakage rheology model

    NASA Astrophysics Data System (ADS)

    Lyakhovsky, Vladimir; Ben-Zion, Yehuda; Ilchev, Assen; Mendecki, Aleksander

    2016-08-01

    We present a thermodynamically based formulation for modelling dynamic rupture processes in the brittle crust using a continuum damage-breakage rheology. The model combines aspects of a continuum viscoelastic damage framework for brittle solids with a continuum breakage mechanics for granular flow within dynamically generated slip zones. The formulation accounts for the density of distributed cracking and other internal flaws in damaged rocks with a scalar damage parameter, and addresses the grain size distribution of a granular phase in the slip zone with a breakage parameter. A dynamic brittle instability is associated with a critical level of damage in the solid, leading to loss of convexity of the solid strain energy, localization and transition to a granular phase associated with lower energy level. The continuum damage-breakage rheology model treats the localization to a slip zone at the onset of dynamic rupture and post-failure recovery process as phase transitions between solid and granular states. The model generates sub- and supershear rupture velocities and pulse-type ruptures seen also in frictional models, and additional important features such as strong dynamic changes of volumetric strain near the rupture front and diversity of nucleation mechanisms. The propagation of rupture front and slip accumulation at a point are correlated with sharp dynamic dilation followed by a gradual decay to a level associated with the final volumetric change associated with the granular phase transition in the slipping zone. The local brittle failure process associated with the solid-granular transition is expected to produce isotropic radiation in addition to the deviatoric terms. The framework significantly extends the ability to model brittle processes in complex geometrical structures and allows analysing the roles of gouge thickness and other parameters on nucleation, rupture and radiation characteristics.

  10. Generative modelling of regulated dynamical behavior in cultured neuronal networks

    NASA Astrophysics Data System (ADS)

    Volman, Vladislav; Baruchi, Itay; Persi, Erez; Ben-Jacob, Eshel

    2004-04-01

    The spontaneous activity of cultured in vitro neuronal networks exhibits rich dynamical behavior. Despite the artificial manner of their construction, the networks’ activity includes features which seemingly reflect the action of underlying regulating mechanism rather than arbitrary causes and effects. Here, we study the cultured networks dynamical behavior utilizing a generative modelling approach. The idea is to include the minimal required generic mechanisms to capture the non-autonomous features of the behavior, which can be reproduced by computer modelling, and then, to identify the additional features of biotic regulation in the observed behavior which are beyond the scope of the model. Our model neurons are composed of soma described by the two Morris-Lecar dynamical variables (voltage and fraction of open potassium channels), with dynamical synapses described by the Tsodyks-Markram three variables dynamics. The model neuron satisfies our self-consistency test: when fed with data recorded from a real cultured networks, it exhibits dynamical behavior very close to that of the networks’ “representative” neuron. Specifically, it shows similar statistical scaling properties (approximated by similar symmetric Lévy distribution with finite mean). A network of such M-L elements spontaneously generates (when weak “structured noise” is added) synchronized bursting events (SBEs) similar to the observed ones. Both the neuronal statistical scaling properties within the bursts and the properties of the SBEs time series show generative (a new discussed concept) agreement with the recorded data. Yet, the model network exhibits different structure of temporal variations and does not recover the observed hierarchical temporal ordering, unless fed with recorded special neurons (with much higher rates of activity), thus indicating the existence of self-regulation mechanisms. It also implies that the spontaneous activity is not simply noise-induced. Instead, the

  11. Simple models for quorum sensing: Nonlinear dynamical analysis

    NASA Astrophysics Data System (ADS)

    Chiang, Wei-Yin; Li, Yue-Xian; Lai, Pik-Yin

    2011-10-01

    Quorum sensing refers to the change in the cooperative behavior of a collection of elements in response to the change in their population size or density. This behavior can be observed in chemical and biological systems. These elements or cells are coupled via chemicals in the surrounding environment. Here we focus on the change of dynamical behavior, in particular from quiescent to oscillatory, as the cell population changes. For instance, the silent behavior of the elements can become oscillatory as the system concentration or population increases. In this work, two simple models are constructed that can produce the essential representative properties in quorum sensing. The first is an excitable or oscillatory phase model, which is probably the simplest model one can construct to describe quorum sensing. Using the mean-field approximation, the parameter regime for quorum sensing behavior can be identified, and analytical results for the detailed dynamical properties, including the phase diagrams, are obtained and verified numerically. The second model consists of FitzHugh-Nagumo elements coupled to the signaling chemicals in the environment. Nonlinear dynamical analysis of this mean-field model exhibits rich dynamical behaviors, such as infinite period bifurcation, supercritical Hopf, fold bifurcation, and subcritical Hopf bifurcations as the population parameter changes for different coupling strengths. Analytical result is obtained for the Hopf bifurcation phase boundary. Furthermore, two elements coupled via the environment and their synchronization behavior for these two models are also investigated. For both models, it is found that the onset of oscillations is accompanied by the synchronized dynamics of the two elements. Possible applications and extension of these models are also discussed.

  12. Theoretical Models of Sunspot Structure and Dynamics

    NASA Astrophysics Data System (ADS)

    Thomas, J. H.

    Recent progress in theoretical modeling of a sunspot is reviewed. The observed properties of umbral dots are well reproduced by realistic simulations of magnetoconvection in a vertical, monolithic magnetic field. To understand the penumbra, it is useful to distinguish between the inner penumbra, dominated by bright filaments containing slender dark cores, and the outer penumbra, made up of dark and bright filaments of comparable width with corresponding magnetic fields differing in inclination by some 30° and strong Evershed flows in the dark filaments along nearly horizontal or downward-plunging magnetic fields. The role of magnetic flux pumping in submerging magnetic flux in the outer penumbra is examined through numerical experiments, and different geometric models of the penumbral magnetic field are discussed in the light of high-resolution observations. Recent, realistic numerical MHD simulations of an entire sunspot have succeeded in reproducing the salient features of the convective pattern in the umbra and the inner penumbra. The siphon-flow mechanism still provides the best explanation of the Evershed flow, particularly in the outer penumbra where it often consists of cool, supersonic downflows.

  13. Rupture models with dynamically determined breakdown displacement

    USGS Publications Warehouse

    Andrews, D.J.

    2004-01-01

    The critical breakdown displacement, Dc, in which friction drops to its sliding value, can be made dependent on event size by specifying friction to be a function of variables other than slip. Two such friction laws are examined here. The first is designed to achieve accuracy and smoothness in discrete numerical calculations. Consistent resolution throughout an evolving rupture is achieved by specifying friction as a function of elapsed time after peak stress is reached. Such a time-weakening model produces Dc and fracture energy proportional to the square root of distance rupture has propagated in the case of uniform stress drop. The second friction law is more physically motivated. Energy loss in a damage zone outside the slip zone has the effect of increasing Dc and limiting peak slip velocity (Andrews, 1976). This article demonstrates a converse effect, that artificially limiting slip velocity on a fault in an elastic medium has a toughening effect, increasing fracture energy and Dc proportionally to rupture propagation distance in the case of uniform stress drop. Both the time-weakening and the velocity-toughening models can be used in calculations with heterogeneous stress drop.

  14. A Dynamic Model for Decision Making During Memory Retrieval

    DTIC Science & Technology

    2015-10-26

    changing as different features are extracted from the test item and knowledge memory . The results, based both on free response tasks and time limited...AFRL-AFOSR-VA-TR-2015-0354 A Dynamic Model for Decision Making During Memory Retrieval Richard Shiffrin TRUSTEES OF INDIANA UNIVERSITY Final Report...4. TITLE AND SUBTITLE A Dynamic Model for Decision Making During Memory Retrieval 5a.  CONTRACT NUMBER 5b.  GRANT NUMBER FA9550-12-1-0255 5c.  PROGRAM

  15. Motion of the heliospheric termination shock - A gas dynamic model

    NASA Technical Reports Server (NTRS)

    Barnes, Aaron

    1993-01-01

    A simple quantitative model is presented for the heliospheric termination shock's anticipated movement in response to upstream solar wind condition variations, under the assumption that the termination shock is initially a strong gasdynamic shock that is at rest relative to the sun, and that there is a discontinuous increase or decrease in the dynamical pressure upstream of the shock. The model suggests that the termination shock is constantly in motion, and that the mean position of the shock lies near the mean equilibrium position which corresponds to the balance between the mean solar wind dynamical pressure and the mean interstellar pressure.

  16. GARCH modelling of covariance in dynamical estimation of inverse solutions

    NASA Astrophysics Data System (ADS)

    Galka, Andreas; Yamashita, Okito; Ozaki, Tohru

    2004-12-01

    The problem of estimating unobserved states of spatially extended dynamical systems poses an inverse problem, which can be solved approximately by a recently developed variant of Kalman filtering; in order to provide the model of the dynamics with more flexibility with respect to space and time, we suggest to combine the concept of GARCH modelling of covariance, well known in econometrics, with Kalman filtering. We formulate this algorithm for spatiotemporal systems governed by stochastic diffusion equations and demonstrate its feasibility by presenting a numerical simulation designed to imitate the situation of the generation of electroencephalographic recordings by the human cortex.

  17. Analytical properties of a three-compartmental dynamical demographic model.

    PubMed

    Postnikov, E B

    2015-07-01

    The three-compartmental demographic model by Korotaeyv-Malkov-Khaltourina, connecting population size, economic surplus, and education level, is considered from the point of view of dynamical systems theory. It is shown that there exist two integrals of motion, which enables the system to be reduced to one nonlinear ordinary differential equation. The study of its structure provides analytical criteria for the dominance ranges of the dynamics of Malthus and Kremer. Additionally, the particular ranges of parameters enable the derived general ordinary differential equations to be reduced to the models of Gompertz and Thoularis-Wallace.

  18. Brillouin spectroscopy of clotting dynamics in a model system

    NASA Astrophysics Data System (ADS)

    Bustamante-Lopez, Sandra C.; Traverso, Andrew J.; Yakovlev, Vladislav V.; Meissner, Kenith E.

    2016-02-01

    Keys to successful treatment of disease include early diagnosis and timely treatment. It is hypothesized that early clotting events may contribute to a pro-thrombotic state that exacerbates atherothrombotic vascular disease. Brillouin spectroscopy involves inelastic coupling of light with phonons and enables viscoelastic characterization of samples at the microscale. In this work, we apply Brillouin spectroscopy to a model fibrinogen-thrombin clotting system with the goal of measuring clotting dynamics at the microscale and providing characterization that is not possible with standard rheometric techniques. Here, the clotting dynamics of the model clotting system are measured at various fibrinogen and thrombin concentrations.

  19. Analytical properties of a three-compartmental dynamical demographic model

    NASA Astrophysics Data System (ADS)

    Postnikov, E. B.

    2015-07-01

    The three-compartmental demographic model by Korotaeyv-Malkov-Khaltourina, connecting population size, economic surplus, and education level, is considered from the point of view of dynamical systems theory. It is shown that there exist two integrals of motion, which enables the system to be reduced to one nonlinear ordinary differential equation. The study of its structure provides analytical criteria for the dominance ranges of the dynamics of Malthus and Kremer. Additionally, the particular ranges of parameters enable the derived general ordinary differential equations to be reduced to the models of Gompertz and Thoularis-Wallace.

  20. A modeling technique for STOVL ejector and volume dynamics

    NASA Technical Reports Server (NTRS)

    Drummond, C. K.; Barankiewicz, W. S.

    1990-01-01

    New models for thrust augmenting ejector performance prediction and feeder duct dynamic analysis are presented and applied to a proposed Short Take Off and Vertical Landing (STOVL) aircraft configuration. Central to the analysis is the nontraditional treatment of the time-dependent volume integrals in the otherwise conventional control-volume approach. In the case of the thrust augmenting ejector, the analysis required a new relationship for transfer of kinetic energy from the primary flow to the secondary flow. Extraction of the required empirical corrections from current steady-state experimental data is discussed; a possible approach for modeling insight through Computational Fluid Dynamics (CFD) is presented.

  1. Dynamics modeling and simulation of autonomous underwater vehicles with appendages

    NASA Astrophysics Data System (ADS)

    Su, Yumin; Zhao, Jinxin; Cao, Jian; Zhang, Guocheng

    2013-03-01

    To provide a simulation system platform for designing and debugging a small autonomous underwater vehicle's (AUV) motion controller, a six-degree of freedom (6-DOF) dynamic model for AUV controlled by thruster and fins with appendages is examined. Based on the dynamic model, a simulation system for the AUV's motion is established. The different kinds of typical motions are simulated to analyze the motion performance and the maneuverability of the AUV. In order to evaluate the influences of appendages on the motion performance of the AUV, simulations of the AUV with and without appendages are performed and compared. The results demonstrate the AUV has good maneuverability with and without appendages.

  2. An opinion-driven behavioral dynamics model for addictive behaviors

    NASA Astrophysics Data System (ADS)

    Moore, Thomas W.; Finley, Patrick D.; Apelberg, Benjamin J.; Ambrose, Bridget K.; Brodsky, Nancy S.; Brown, Theresa J.; Husten, Corinne; Glass, Robert J.

    2015-04-01

    We present a model of behavioral dynamics that combines a social network-based opinion dynamics model with behavioral mapping. The behavioral component is discrete and history-dependent to represent situations in which an individual's behavior is initially driven by opinion and later constrained by physiological or psychological conditions that serve to maintain the behavior. Individuals are modeled as nodes in a social network connected by directed edges. Parameter sweeps illustrate model behavior and the effects of individual parameters and parameter interactions on model results. Mapping a continuous opinion variable into a discrete behavioral space induces clustering on directed networks. Clusters provide targets of opportunity for influencing the network state; however, the smaller the network the greater the stochasticity and potential variability in outcomes. This has implications both for behaviors that are influenced by close relationships verses those influenced by societal norms and for the effectiveness of strategies for influencing those behaviors.

  3. Evolving complex dynamics in electronic models of genetic networks

    NASA Astrophysics Data System (ADS)

    Mason, Jonathan; Linsay, Paul S.; Collins, J. J.; Glass, Leon

    2004-09-01

    Ordinary differential equations are often used to model the dynamics and interactions in genetic networks. In one particularly simple class of models, the model genes control the production rates of products of other genes by a logical function, resulting in piecewise linear differential equations. In this article, we construct and analyze an electronic circuit that models this class of piecewise linear equations. This circuit combines CMOS logic and RC circuits to model the logical control of the increase and decay of protein concentrations in genetic networks. We use these electronic networks to study the evolution of limit cycle dynamics. By mutating the truth tables giving the logical functions for these networks, we evolve the networks to obtain limit cycle oscillations of desired period. We also investigate the fitness landscapes of our networks to determine the optimal mutation rate for evolution.

  4. Elements of a dynamic systems model of canopy photosynthesis.

    PubMed

    Zhu, Xin-Guang; Song, Qingfeng; Ort, Donald R

    2012-06-01

    Improving photosynthesis throughout the full canopy rather than photosynthesis of only the top leaves of the canopy is central to improving crop yields. Many canopy photosynthesis models have been developed from physiological and ecological perspectives, however most do not consider heterogeneities of microclimatic factors inside a canopy, canopy dynamics and associated energetics, or competition among different plants, and most models lack a direct linkage to molecular processes. Here we described the rationale, elements, and approaches necessary to build a dynamic systems model of canopy photosynthesis. A systems model should integrate metabolic processes including photosynthesis, respiration, nitrogen metabolism, resource re-mobilization and photosynthate partitioning with canopy level light, CO(2), water vapor distributions and heat exchange processes. In so doing a systems-based canopy photosynthesis model will enable studies of molecular ecology and dramatically improve our insight into engineering crops for improved canopy photosynthetic CO(2) uptake, resource use efficiencies and yields.

  5. Error Estimation for Reduced Order Models of Dynamical Systems

    SciTech Connect

    Homescu, C; Petzold, L; Serban, R

    2004-01-22

    The use of reduced order models to describe a dynamical system is pervasive in science and engineering. Often these models are used without an estimate of their error or range of validity. In this paper we consider dynamical systems and reduced models built using proper orthogonal decomposition. We show how to compute estimates and bounds for these errors, by a combination of small sample statistical condition estimation and error estimation using the adjoint method. Most importantly, the proposed approach allows the assessment of regions of validity for reduced models, i.e., ranges of perturbations in the original system over which the reduced model is still appropriate. Numerical examples validate our approach: the error norm estimates approximate well the forward error while the derived bounds are within an order of magnitude.

  6. An opinion-driven behavioral dynamics model for addictive behaviors

    SciTech Connect

    Moore, Thomas W.; Finley, Patrick D.; Apelberg, Benjamin J.; Ambrose, Bridget K.; Brodsky, Nancy S.; Brown, Theresa J.; Husten, Corinne; Glass, Robert J.

    2015-04-08

    We present a model of behavioral dynamics that combines a social network-based opinion dynamics model with behavioral mapping. The behavioral component is discrete and history-dependent to represent situations in which an individual’s behavior is initially driven by opinion and later constrained by physiological or psychological conditions that serve to maintain the behavior. Additionally, individuals are modeled as nodes in a social network connected by directed edges. Parameter sweeps illustrate model behavior and the effects of individual parameters and parameter interactions on model results. Mapping a continuous opinion variable into a discrete behavioral space induces clustering on directed networks. Clusters provide targets of opportunity for influencing the network state; however, the smaller the network the greater the stochasticity and potential variability in outcomes. Furthermore, this has implications both for behaviors that are influenced by close relationships verses those influenced by societal norms and for the effectiveness of strategies for influencing those behaviors.

  7. Estimation of dynamic stability parameters from drop model flight tests

    NASA Technical Reports Server (NTRS)

    Chambers, J. R.; Iliff, K. W.

    1981-01-01

    A recent NASA application of a remotely-piloted drop model to studies of the high angle-of-attack and spinning characteristics of a fighter configuration has provided an opportunity to evaluate and develop parameter estimation methods for the complex aerodynamic environment associated with high angles of attack. The paper discusses the overall drop model operation including descriptions of the model, instrumentation, launch and recovery operations, piloting concept, and parameter identification methods used. Static and dynamic stability derivatives were obtained for an angle-of-attack range from -20 deg to 53 deg. The results of the study indicated that the variations of the estimates with angle of attack were consistent for most of the static derivatives, and the effects of configuration modifications to the model (such as nose strakes) were apparent in the static derivative estimates. The dynamic derivatives exhibited greater uncertainty levels than the static derivatives, possibly due to nonlinear aerodynamics, model response characteristics, or additional derivatives.

  8. Hierarchical Heteroclinics in Dynamical Model of Cognitive Processes: Chunking

    NASA Astrophysics Data System (ADS)

    Afraimovich, Valentin S.; Young, Todd R.; Rabinovich, Mikhail I.

    Combining the results of brain imaging and nonlinear dynamics provides a new hierarchical vision of brain network functionality that is helpful in understanding the relationship of the network to different mental tasks. Using these ideas it is possible to build adequate models for the description and prediction of different cognitive activities in which the number of variables is usually small enough for analysis. The dynamical images of different mental processes depend on their temporal organization and, as a rule, cannot be just simple attractors since cognition is characterized by transient dynamics. The mathematical image for a robust transient is a stable heteroclinic channel consisting of a chain of saddles connected by unstable separatrices. We focus here on hierarchical chunking dynamics that can represent several cognitive activities. Chunking is the dynamical phenomenon that means dividing a long information chain into shorter items. Chunking is known to be important in many processes of perception, learning, memory and cognition. We prove that in the phase space of the model that describes chunking there exists a new mathematical object — heteroclinic sequence of heteroclinic cycles — using the technique of slow-fast approximations. This new object serves as a skeleton of motions reflecting sequential features of hierarchical chunking dynamics and is an adequate image of the chunking processing.

  9. Moisture evaluation by dynamic thermography data modeling

    NASA Astrophysics Data System (ADS)

    Bison, Paolo G.; Grinzato, Ermanno G.; Marinetti, Sergio

    1994-03-01

    This paper discusses the design of a nondestructive method for in situ detection of moistened areas in buildings and the evaluation of the water content in porous materials by thermographic analysis. The use of heat transfer model to interpret data allows to improve the measurement accuracy taking into account the actual boundary conditions. The relative increase of computation time is balanced by the additional advantage to optimize the testing procedure of different objects simulating the heat transfer. Experimental results on bricks used in building for restoration activities, are discussed. The water content measured in different hygrometric conditions is compared with known values. A correction on the absorptivity coefficient dependent on water content is introduced.

  10. Dynamical Model of Flow in Martian Valleys

    NASA Astrophysics Data System (ADS)

    Czechowski, Leszek; Witek, Piotr; Misiura, Katarzyna

    On the surface of Mars, under current conditions, liquid water could exist only occasionally in lowest regions of the planet. This water contains probably some components that decrease its freezing point and raised its boiling point. However billions years ago more dense atmosphere on the Mars allows for the presence of large volume of liquid water. There are a number of structures apparently resulting from flowing liquid water in the past. They are of two types: outflow channels and valley networks. We investigate here the possible flow in some chosen valley networks. The numerical model is used. We try to determine the basic properties of the flow, its erosion as well as the transport efficiencies of the material. The comparison with the terrestrial rivers indicates some important differences. Acknowledgments This work was partially supported by the National Science Centre (grant 2011/01/B/ST10/06653).

  11. Dynamic modeling of gene expression data

    NASA Technical Reports Server (NTRS)

    Holter, N. S.; Maritan, A.; Cieplak, M.; Fedoroff, N. V.; Banavar, J. R.

    2001-01-01

    We describe the time evolution of gene expression levels by using a time translational matrix to predict future expression levels of genes based on their expression levels at some initial time. We deduce the time translational matrix for previously published DNA microarray gene expression data sets by modeling them within a linear framework by using the characteristic modes obtained by singular value decomposition. The resulting time translation matrix provides a measure of the relationships among the modes and governs their time evolution. We show that a truncated matrix linking just a few modes is a good approximation of the full time translation matrix. This finding suggests that the number of essential connections among the genes is small.

  12. A Formal Approach to Empirical Dynamic Model Optimization and Validation

    NASA Technical Reports Server (NTRS)

    Crespo, Luis G; Morelli, Eugene A.; Kenny, Sean P.; Giesy, Daniel P.

    2014-01-01

    A framework was developed for the optimization and validation of empirical dynamic models subject to an arbitrary set of validation criteria. The validation requirements imposed upon the model, which may involve several sets of input-output data and arbitrary specifications in time and frequency domains, are used to determine if model predictions are within admissible error limits. The parameters of the empirical model are estimated by finding the parameter realization for which the smallest of the margins of requirement compliance is as large as possible. The uncertainty in the value of this estimate is characterized by studying the set of model parameters yielding predictions that comply with all the requirements. Strategies are presented for bounding this set, studying its dependence on admissible prediction error set by the analyst, and evaluating the sensitivity of the model predictions to parameter variations. This information is instrumental in characterizing uncertainty models used for evaluating the dynamic model at operating conditions differing from those used for its identification and validation. A practical example based on the short period dynamics of the F-16 is used for illustration.

  13. A linear systems analysis of the yaw dynamics of a dynamically scaled insect model.

    PubMed

    Dickson, William B; Polidoro, Peter; Tanner, Melissa M; Dickinson, Michael H

    2010-09-01

    Recent studies suggest that fruit flies use subtle changes to their wing motion to actively generate forces during aerial maneuvers. In addition, it has been estimated that the passive rotational damping caused by the flapping wings of an insect is around two orders of magnitude greater than that for the body alone. At present, however, the relationships between the active regulation of wing kinematics, passive damping produced by the flapping wings and the overall trajectory of the animal are still poorly understood. In this study, we use a dynamically scaled robotic model equipped with a torque feedback mechanism to study the dynamics of yaw turns in the fruit fly Drosophila melanogaster. Four plausible mechanisms for the active generation of yaw torque are examined. The mechanisms deform the wing kinematics of hovering in order to introduce asymmetry that results in the active production of yaw torque by the flapping wings. The results demonstrate that the stroke-averaged yaw torque is well approximated by a model that is linear with respect to both the yaw velocity and the magnitude of the kinematic deformations. Dynamic measurements, in which the yaw torque produced by the flapping wings was used in real-time to determine the rotation of the robot, suggest that a first-order linear model with stroke-average coefficients accurately captures the yaw dynamics of the system. Finally, an analysis of the stroke-average dynamics suggests that both damping and inertia will be important factors during rapid body saccades of a fruit fly.

  14. A mathematical model of population dynamics for Batesian mimicry system.

    PubMed

    Seno, Hiromi; Kohno, Takahiro

    2012-01-01

    We analyse a mathematical model of the population dynamics among a mimic, a corresponding model, and their common predator populations. Predator changes its search-and-attack probability by forming and losing its search image. It cannot distinguish the mimic from the model. Once a predator eats a model individual, it comes to omit both the model and the mimic species from its diet menu. If a predator eats a mimic individual, it comes to increase the search-and-attack probability for both model and mimic. The predator may lose the repulsive/attractive search image with a probability per day. By analysing our model, we can derive the mathematical condition for the persistence of model and mimic populations, and then get the result that the condition for the persistence of model population does not depend on the mimic population size, while the condition for the persistence of mimic population does depend the predator's memory of search image.

  15. Green Algae as Model Organisms for Biological Fluid Dynamics.

    PubMed

    Goldstein, Raymond E

    2015-01-01

    In the past decade the volvocine green algae, spanning from the unicellular Chlamydomonas to multicellular Volvox, have emerged as model organisms for a number of problems in biological fluid dynamics. These include flagellar propulsion, nutrient uptake by swimming organisms, hydrodynamic interactions mediated by walls, collective dynamics and transport within suspensions of microswimmers, the mechanism of phototaxis, and the stochastic dynamics of flagellar synchronization. Green algae are well suited to the study of such problems because of their range of sizes (from 10 μm to several millimetres), their geometric regularity, the ease with which they can be cultured and the availability of many mutants that allow for connections between molecular details and organism-level behavior. This review summarizes these recent developments and highlights promising future directions in the study of biological fluid dynamics, especially in the context of evolutionary biology, that can take advantage of these remarkable organisms.

  16. Green Algae as Model Organisms for Biological Fluid Dynamics

    NASA Astrophysics Data System (ADS)

    Goldstein, Raymond E.

    2015-01-01

    In the past decade, the volvocine green algae, spanning from the unicellular Chlamydomonas to multicellular Volvox, have emerged as model organisms for a number of problems in biological fluid dynamics. These include flagellar propulsion, nutrient uptake by swimming organisms, hydrodynamic interactions mediated by walls, collective dynamics and transport within suspensions of microswimmers, the mechanism of phototaxis, and the stochastic dynamics of flagellar synchronization. Green algae are well suited to the study of such problems because of their range of sizes (from 10 μm to several millimeters), their geometric regularity, the ease with which they can be cultured, and the availability of many mutants that allow for connections between molecular details and organism-level behavior. This review summarizes these recent developments and highlights promising future directions in the study of biological fluid dynamics, especially in the context of evolutionary biology, that can take advantage of these remarkable organisms.

  17. Nonlinear dynamics of dipoles in microtubules: Pseudospin model.

    PubMed

    Nesterov, Alexander I; Ramírez, Mónica F; Berman, Gennady P; Mavromatos, Nick E

    2016-06-01

    We perform a theoretical study of the dynamics of the electric field excitations in a microtubule by taking into consideration the realistic cylindrical geometry, dipole-dipole interactions of the tubulin-based protein heterodimers, the radial electric field produced by the solvent, and a possible degeneracy of energy states of individual heterodimers. The consideration is done in the frame of the classical pseudospin model. We derive the system of nonlinear dynamical partial differential equations of motion for interacting dipoles and the continuum version of these equations. We obtain the solutions of these equations in the form of snoidal waves, solitons, kinks, and localized spikes. Our results will help to achieve a better understanding of the functional properties of microtubules including the motor protein dynamics and the information transfer processes. Our considerations are based on classical dynamics. Some speculations on the role of possible quantum effects are also made.

  18. The fractional-nonlinear robotic manipulator: Modeling and dynamic simulations

    NASA Astrophysics Data System (ADS)

    David, S. A.; Balthazar, J. M.; Julio, B. H. S.; Oliveira, C.

    2012-11-01

    In this paper, we applied the Riemann-Liouville approach and the fractional Euler-Lagrange equations in order to obtain the fractional-order nonlinear dynamics equations of a two link robotic manipulator. The aformentioned equations have been simulated for several cases involving: integer and non-integer order analysis, with and without external forcing acting and some different initial conditions. The fractional nonlinear governing equations of motion are coupled and the time evolution of the angular positions and the phase diagrams have been plotted to visualize the effect of fractional order approach. The new contribution of this work arises from the fact that the dynamics equations of a two link robotic manipulator have been modeled with the fractional Euler-Lagrange dynamics approach. The results reveal that the fractional-nonlinear robotic manipulator can exhibit different and curious behavior from those obtained with the standard dynamical system and can be useful for a better understanding and control of such nonlinear systems.

  19. Green Algae as Model Organisms for Biological Fluid Dynamics*

    PubMed Central

    Goldstein, Raymond E.

    2015-01-01

    In the past decade the volvocine green algae, spanning from the unicellular Chlamydomonas to multicellular Volvox, have emerged as model organisms for a number of problems in biological fluid dynamics. These include flagellar propulsion, nutrient uptake by swimming organisms, hydrodynamic interactions mediated by walls, collective dynamics and transport within suspensions of microswimmers, the mechanism of phototaxis, and the stochastic dynamics of flagellar synchronization. Green algae are well suited to the study of such problems because of their range of sizes (from 10 μm to several millimetres), their geometric regularity, the ease with which they can be cultured and the availability of many mutants that allow for connections between molecular details and organism-level behavior. This review summarizes these recent developments and highlights promising future directions in the study of biological fluid dynamics, especially in the context of evolutionary biology, that can take advantage of these remarkable organisms. PMID:26594068

  20. Nonlinear dynamics of dipoles in microtubules: Pseudospin model

    NASA Astrophysics Data System (ADS)

    Nesterov, Alexander I.; Ramírez, Mónica F.; Berman, Gennady P.; Mavromatos, Nick E.

    2016-06-01

    We perform a theoretical study of the dynamics of the electric field excitations in a microtubule by taking into consideration the realistic cylindrical geometry, dipole-dipole interactions of the tubulin-based protein heterodimers, the radial electric field produced by the solvent, and a possible degeneracy of energy states of individual heterodimers. The consideration is done in the frame of the classical pseudospin model. We derive the system of nonlinear dynamical partial differential equations of motion for interacting dipoles and the continuum version of these equations. We obtain the solutions of these equations in the form of snoidal waves, solitons, kinks, and localized spikes. Our results will help to achieve a better understanding of the functional properties of microtubules including the motor protein dynamics and the information transfer processes. Our considerations are based on classical dynamics. Some speculations on the role of possible quantum effects are also made.

  1. An exploration of Saturn's atmospheric dynamics with Global Climate Modeling

    NASA Astrophysics Data System (ADS)

    Spiga, Aymeric; Guerlet, Sandrine; Indurain, Mikel; Meurdesoif, Yann; Millour, Ehouarn; Sylvestre, Mélody; Dubos, Thomas; Fouchet, Thierry

    2015-04-01

    A decade of Cassini observations has yielded a new vision on the dynamical phenomena in Saturn's troposphere and stratosphere. Several puzzling signatures (equatorial oscillations with a period of about half a Saturn year, interhemispheric circulations affecting the hydrocarbons' distribution, including possible effects of rings shadowing, sudden warming associated with the powerful 2010 Great White Spot) cannot be explained by current photochemical and radiative models, which do not include dynamics. We therefore suspect that 1. the observed anomalies arise from large-scale dynamical circulations and 2. those large-scale dynamical motions are driven by atmospheric waves, eddies, and convection, in other words fundamental mechanisms giving birth to, e.g., the Quasi-Biennal Oscillation and Brewer-Dobson circulation in the Earth's middle atmosphere. We explore the plausibility of this scenario using our new Global Climate Modeling (GCM) for Saturn. To build this model, we firstly formulated dedicated physical parameterizations for Saturn's atmosphere, with a particular emphasis on radiative computations (using a correlated-k radiative transfer model, with radiative species and spectral discretization tailored for Saturn) aimed at both efficiency and accuracy, and validated them against existing Cassini observations. A second step consisted in coupling this radiative model to an hydrodynamical solver to predict the three-dimensional evolution of Saturn's tropospheric and stratospheric flow. We will provide an analysis of the first results of those dynamical simulations, with a focus on the development of baroclinic and barotropic instability, on eddy vs. mean flow interactions, and how this could relate to the enigmatic signatures observed by Cassini. Preliminary high-resolution simulations with a new icosahedral dynamical solver adapted to high-performance computing will also be analyzed. Perspectives are twofold: firstly, broadening our fundamental knowledge of

  2. An exploration of Saturn's stratospheric dynamics through Global Climate Modeling

    NASA Astrophysics Data System (ADS)

    Spiga, Aymeric; Guerlet, Sandrine; Indurain, Mikel; Millour, Ehouarn; Sylvestre, Mélody; Thierry, Fouchet; Meurdesoif, Yann; Thomas, Dubos

    2014-11-01

    A decade of Cassini observations has yielded a new vision on the dynamical phenomena in Saturn's troposphere and stratosphere. Several puzzling signatures (equatorial oscillations with a period of about half a Saturn year, interhemispheric circulations affecting the hydrocarbons’ distribution, including possible effects of rings shadowing, sudden warming associated with the powerful 2010 Great White Spot) cannot be explained by current photochemical and radiative models, which do not include dynamics. We therefore suspect that 1. the observed anomalies arise from large-scale dynamical circulations and 2. those large-scale dynamical motions are driven by atmospheric waves, eddies, and convection, in other words fundamental mechanisms giving birth to, e.g., the Quasi-Biennal Oscillation and Brewer-Dobson circulation in the Earth’s middle atmosphere. We explore the plausibility of this scenario using our new Global Climate Modeling (GCM) for Saturn. To build this model, we firstly formulated dedicated physical parameterizations for Saturn’s atmosphere, with a particular emphasis on radiative computations (using a correlated-k radiative transfer model, with radiative species and spectral discretization tailored for Saturn) aimed at both efficiency and accuracy, and validated them against existing Cassini observations. A second step consisted in coupling this radiative model to an hydrodynamical solver to predict the three-dimensional evolution of Saturn's tropospheric and stratospheric flow. We will provide an analysis of the first results of those dynamical simulations, with a focus on the development of baroclinic and barotropic instability, on eddy vs. mean flow interactions, and how this could relate to the enigmatic signatures observed by Cassini. Preliminary high-resolution simulations with a new icosahedral dynamical solver adapted to high-performance computing will also be analyzed. Perspectives are twofold: firstly, broadening our fundamental knowledge

  3. Progress Toward a Format Standard for Flight Dynamics Models

    NASA Technical Reports Server (NTRS)

    Jackson, E. Bruce; Hildreth, Bruce L.

    2006-01-01

    In the beginning, there was FORTRAN, and it was... not so good. But it was universal, and all flight simulator equations of motion were coded with it. Then came ACSL, C, Ada, C++, C#, Java, FORTRAN-90, Matlab/Simulink, and a number of other programming languages. Since the halcyon punch card days of 1968, models of aircraft flight dynamics have proliferated in training devices, desktop engineering and development computers, and control design textbooks. With the rise of industry teaming and increased reliance on simulation for procurement decisions, aircraft and missile simulation models are created, updated, and exchanged with increasing frequency. However, there is no real lingua franca to facilitate the exchange of models from one simulation user to another. The current state-of-the-art is such that several staff-months if not staff-years are required to 'rehost' each release of a flight dynamics model from one simulation environment to another one. If a standard data package or exchange format were to be universally adopted, the cost and time of sharing and updating aerodynamics, control laws, mass and inertia, and other flight dynamic components of the equations of motion of an aircraft or spacecraft simulation could be drastically reduced. A 2002 paper estimated over $ 6 million in savings could be realized for one military aircraft type alone. This paper describes the efforts of the American Institute of Aeronautics and Astronautics (AIAA) to develop a standard flight dynamic model exchange standard based on XML and HDF-5 data formats.

  4. Superelement model based parallel algorithm for vehicle dynamics

    NASA Astrophysics Data System (ADS)

    Agrawal, O. P.; Danhof, K. J.; Kumar, R.

    1994-05-01

    This paper presents a superelement model based parallel algorithm for a planar vehicle dynamics. The vehicle model is made up of a chassis and two suspension systems each of which consists of an axle-wheel assembly and two trailing arms. In this model, the chassis is treated as a Cartesian element and each suspension system is treated as a superelement. The parameters associated with the superelements are computed using an inverse dynamics technique. Suspension shock absorbers and the tires are modeled by nonlinear springs and dampers. The Euler-Lagrange approach is used to develop the system equations of motion. This leads to a system of differential and algebraic equations in which the constraints internal to superelements appear only explicitly. The above formulation is implemented on a multiprocessor machine. The numerical flow chart is divided into modules and the computation of several modules is performed in parallel to gain computational efficiency. In this implementation, the master (parent processor) creates a pool of slaves (child processors) at the beginning of the program. The slaves remain in the pool until they are needed to perform certain tasks. Upon completion of a particular task, a slave returns to the pool. This improves the overall response time of the algorithm. The formulation presented is general which makes it attractive for a general purpose code development. Speedups obtained in the different modules of the dynamic analysis computation are also presented. Results show that the superelement model based parallel algorithm can significantly reduce the vehicle dynamics simulation time.

  5. A data driven nonlinear stochastic model for blood glucose dynamics.

    PubMed

    Zhang, Yan; Holt, Tim A; Khovanova, Natalia

    2016-03-01

    The development of adequate mathematical models for blood glucose dynamics may improve early diagnosis and control of diabetes mellitus (DM). We have developed a stochastic nonlinear second order differential equation to describe the response of blood glucose concentration to food intake using continuous glucose monitoring (CGM) data. A variational Bayesian learning scheme was applied to define the number and values of the system's parameters by iterative optimisation of free energy. The model has the minimal order and number of parameters to successfully describe blood glucose dynamics in people with and without DM. The model accounts for the nonlinearity and stochasticity of the underlying glucose-insulin dynamic process. Being data-driven, it takes full advantage of available CGM data and, at the same time, reflects the intrinsic characteristics of the glucose-insulin system without detailed knowledge of the physiological mechanisms. We have shown that the dynamics of some postprandial blood glucose excursions can be described by a reduced (linear) model, previously seen in the literature. A comprehensive analysis demonstrates that deterministic system parameters belong to different ranges for diabetes and controls. Implications for clinical practice are discussed. This is the first study introducing a continuous data-driven nonlinear stochastic model capable of describing both DM and non-DM profiles.

  6. The Mathematics of Psychotherapy: A Nonlinear Model of Change Dynamics.

    PubMed

    Schiepek, Gunter; Aas, Benjamin; Viol, Kathrin

    2016-07-01

    Psychotherapy is a dynamic process produced by a complex system of interacting variables. Even though there are qualitative models of such systems the link between structure and function, between network and network dynamics is still missing. The aim of this study is to realize these links. The proposed model is composed of five state variables (P: problem severity, S: success and therapeutic progress, M: motivation to change, E: emotions, I: insight and new perspectives) interconnected by 16 functions. The shape of each function is modified by four parameters (a: capability to form a trustful working alliance, c: mentalization and emotion regulation, r: behavioral resources and skills, m: self-efficacy and reward expectation). Psychologically, the parameters play the role of competencies or traits, which translate into the concept of control parameters in synergetics. The qualitative model was transferred into five coupled, deterministic, nonlinear difference equations generating the dynamics of each variable as a function of other variables. The mathematical model is able to reproduce important features of psychotherapy processes. Examples of parameter-dependent bifurcation diagrams are given. Beyond the illustrated similarities between simulated and empirical dynamics, the model has to be further developed, systematically tested by simulated experiments, and compared to empirical data.

  7. Lateral thinking, from the Hopfield model to cortical dynamics.

    PubMed

    Akrami, Athena; Russo, Eleonora; Treves, Alessandro

    2012-01-24

    Self-organizing attractor networks may comprise the building blocks for cortical dynamics, providing the basic operations of categorization, including analog-to-digital conversion, association and auto-association, which are then expressed as components of distinct cognitive functions depending on the contents of the neural codes in each region. To assess the viability of this scenario, we first review how a local cortical patch may be modeled as an attractor network, in which memory representations are not artificially stored as prescribed binary patterns of activity as in the Hopfield model, but self-organize as continuously graded patterns induced by afferent input. Recordings in macaques indicate that such cortical attractor networks may express retrieval dynamics over cognitively plausible rapid time scales, shorter than those dominated by neuronal fatigue. A cortical network encompassing many local attractor networks, and incorporating a realistic description of adaptation dynamics, may be captured by a Potts model. This network model has the capacity to engage long-range associations into sustained iterative attractor dynamics at a cortical scale, in what may be regarded as a mathematical model of spontaneous lateral thought. This article is part of a Special Issue entitled: Neural Coding.

  8. Dynamical movement primitives: learning attractor models for motor behaviors.

    PubMed

    Ijspeert, Auke Jan; Nakanishi, Jun; Hoffmann, Heiko; Pastor, Peter; Schaal, Stefan

    2013-02-01

    Nonlinear dynamical systems have been used in many disciplines to model complex behaviors, including biological motor control, robotics, perception, economics, traffic prediction, and neuroscience. While often the unexpected emergent behavior of nonlinear systems is the focus of investigations, it is of equal importance to create goal-directed behavior (e.g., stable locomotion from a system of coupled oscillators under perceptual guidance). Modeling goal-directed behavior with nonlinear systems is, however, rather difficult due to the parameter sensitivity of these systems, their complex phase transitions in response to subtle parameter changes, and the difficulty of analyzing and predicting their long-term behavior; intuition and time-consuming parameter tuning play a major role. This letter presents and reviews dynamical movement primitives, a line of research for modeling attractor behaviors of autonomous nonlinear dynamical systems with the help of statistical learning techniques. The essence of our approach is to start with a simple dynamical system, such as a set of linear differential equations, and transform those into a weakly nonlinear system with prescribed attractor dynamics by means of a learnable autonomous forcing term. Both point attractors and limit cycle attractors of almost arbitrary complexity can be generated. We explain the design principle of our approach and evaluate its properties in several example applications in motor control and robotics.

  9. Development of a solid propellant viscoelastic dynamic model

    NASA Technical Reports Server (NTRS)

    Hufferd, W. L.; Fitzgerald, J. E.

    1976-01-01

    The results of a one year study to develop a dynamic response model for the Space Shuttle Solid Rocket Motor (SRM) propellant are presented. An extensive literature survey was conducted, from which it was concluded that the only significant variables affecting the dynamic response of the SRM propellant are temperature and frequency. Based on this study, and experimental data on propellants related to the SRM propellant, a dynamic constitutive model was developed in the form of a simple power law with temperature incorporated in the form of a modified power law. A computer program was generated which performs a least-squares curve-fit of laboratory data to determine the model parameters and it calculates dynamic moduli at any desired temperature and frequency. Additional studies investigated dynamic scaling laws and the extent of coupling between the SRM propellant and motor cases. It was found, in agreement with other investigations, that the propellant provides all of the mass and damping characteristics whereas the case provides all of the stiffness.

  10. Pacemaker dynamics in the full Morris-Lecar model

    NASA Astrophysics Data System (ADS)

    González-Miranda, J. M.

    2014-09-01

    This article reports the finding of pacemaker dynamics in certain region of the parameter space of the three-dimensional version of the Morris-Lecar model for the voltage oscillations of a muscle cell. This means that the cell membrane potential displays sustained oscillations in the absence of an external electrical stimulation. The development of this dynamic behavior is shown to be tied to the strength of the leak current contained in the model. The approach followed is mostly based on the use of linear stability analysis and numerical continuation techniques. In this way it is shown that the oscillatory dynamics is associated to the existence of two Hopf bifurcations, one subcritical and other supercritical. Moreover, it is explained that in the region of parameter values most commonly studied for this model such pacemaker dynamics is not displayed because of the development of two fold bifurcations, with the increase of the strength of the leak current, whose interaction with the Hopf bifurcations destroys the oscillatory dynamics.

  11. Single-cluster dynamics for the random-cluster model

    NASA Astrophysics Data System (ADS)

    Deng, Youjin; Qian, Xiaofeng; Blöte, Henk W. J.

    2009-09-01

    We formulate a single-cluster Monte Carlo algorithm for the simulation of the random-cluster model. This algorithm is a generalization of the Wolff single-cluster method for the q -state Potts model to noninteger values q>1 . Its results for static quantities are in a satisfactory agreement with those of the existing Swendsen-Wang-Chayes-Machta (SWCM) algorithm, which involves a full-cluster decomposition of random-cluster configurations. We explore the critical dynamics of this algorithm for several two-dimensional Potts and random-cluster models. For integer q , the single-cluster algorithm can be reduced to the Wolff algorithm, for which case we find that the autocorrelation functions decay almost purely exponentially, with dynamic exponents zexp=0.07 (1), 0.521 (7), and 1.007 (9) for q=2 , 3, and 4, respectively. For noninteger q , the dynamical behavior of the single-cluster algorithm appears to be very dissimilar to that of the SWCM algorithm. For large critical systems, the autocorrelation function displays a range of power-law behavior as a function of time. The dynamic exponents are relatively large. We provide an explanation for this peculiar dynamic behavior.

  12. Single-cluster dynamics for the random-cluster model.

    PubMed

    Deng, Youjin; Qian, Xiaofeng; Blöte, Henk W J

    2009-09-01

    We formulate a single-cluster Monte Carlo algorithm for the simulation of the random-cluster model. This algorithm is a generalization of the Wolff single-cluster method for the q-state Potts model to noninteger values q>1. Its results for static quantities are in a satisfactory agreement with those of the existing Swendsen-Wang-Chayes-Machta (SWCM) algorithm, which involves a full-cluster decomposition of random-cluster configurations. We explore the critical dynamics of this algorithm for several two-dimensional Potts and random-cluster models. For integer q, the single-cluster algorithm can be reduced to the Wolff algorithm, for which case we find that the autocorrelation functions decay almost purely exponentially, with dynamic exponents z(exp)=0.07 (1), 0.521 (7), and 1.007 (9) for q=2, 3, and 4, respectively. For noninteger q, the dynamical behavior of the single-cluster algorithm appears to be very dissimilar to that of the SWCM algorithm. For large critical systems, the autocorrelation function displays a range of power-law behavior as a function of time. The dynamic exponents are relatively large. We provide an explanation for this peculiar dynamic behavior.

  13. A local dynamic model for large eddy simulation

    NASA Technical Reports Server (NTRS)

    Ghosal, Sandip; Lund, Thomas S.; Moin, Parviz

    1993-01-01

    The dynamic model is a method for computing the coefficient C in Smagorinsky's model for the subgrid-scale stress tensor as a function of position from the information already contained in the resolved velocity field rather than treating it as an adjustable parameter. A variational formulation of the dynamic model is described that removes the inconsistency associated with taking C out of the filtering operation. This model, however, is still unstable due to the negative eddy-viscosity. Next, three models are presented that are mathematically consistent as well as numerically stable. The first two are applicable to homogeneous flows and flows with at least one homogeneous direction, respectively, and are, in fact, a rigorous derivation of the ad hoc expressions used by previous authors. The third model in this set can be applied to arbitrary flows, and it is stable because the C it predicts is always positive. Finally, a model involving the subgrid-scale kinetic energy is presented which attempts to model backscatter. This last model has some desirable theoretical features. However, even though it gives results in LES that are qualitatively correct, it is outperformed by the simpler constrained variational models. It is suggested that one of the constrained variational models should be used for actual LES while theoretical investigation of the kinetic energy approach should be continued in an effort to improve its predictive power and to understand more about backscatter.

  14. Cholera transmission dynamic models for public health practitioners

    PubMed Central

    2014-01-01

    Great progress has been made in mathematical models of cholera transmission dynamics in recent years. However, little impact, if any, has been made by models upon public health decision-making and day-to-day routine of epidemiologists. This paper provides a brief introduction to the basics of ordinary differential equation models of cholera transmission dynamics. We discuss a basic model adapted from Codeço (2001), and how it can be modified to incorporate different hypotheses, including the importance of asymptomatic or inapparent infections, and hyperinfectious V. cholerae and human-to-human transmission. We highlight three important challenges of cholera models: (1) model misspecification and parameter uncertainty, (2) modeling the impact of water, sanitation and hygiene interventions and (3) model structure. We use published models, especially those related to the 2010 Haitian outbreak as examples. We emphasize that the choice of models should be dictated by the research questions in mind. More collaboration is needed between policy-makers, epidemiologists and modelers in public health. PMID:24520853

  15. Dynamic crack initiation toughness : experiments and peridynamic modeling.

    SciTech Connect

    Foster, John T.

    2009-10-01

    This is a dissertation on research conducted studying the dynamic crack initiation toughness of a 4340 steel. Researchers have been conducting experimental testing of dynamic crack initiation toughness, K{sub Ic}, for many years, using many experimental techniques with vastly different trends in the results when reporting K{sub Ic} as a function of loading rate. The dissertation describes a novel experimental technique for measuring K{sub Ic} in metals using the Kolsky bar. The method borrows from improvements made in recent years in traditional Kolsky bar testing by using pulse shaping techniques to ensure a constant loading rate applied to the sample before crack initiation. Dynamic crack initiation measurements were reported on a 4340 steel at two different loading rates. The steel was shown to exhibit a rate dependence, with the recorded values of K{sub Ic} being much higher at the higher loading rate. Using the knowledge of this rate dependence as a motivation in attempting to model the fracture events, a viscoplastic constitutive model was implemented into a peridynamic computational mechanics code. Peridynamics is a newly developed theory in solid mechanics that replaces the classical partial differential equations of motion with integral-differential equations which do not require the existence of spatial derivatives in the displacement field. This allows for the straightforward modeling of unguided crack initiation and growth. To date, peridynamic implementations have used severely restricted constitutive models. This research represents the first implementation of a complex material model and its validation. After showing results comparing deformations to experimental Taylor anvil impact for the viscoplastic material model, a novel failure criterion is introduced to model the dynamic crack initiation toughness experiments. The failure model is based on an energy criterion and uses the K{sub Ic} values recorded experimentally as an input. The failure model

  16. Fugacity superposition: a new approach to dynamic multimedia fate modeling.

    PubMed

    Hertwich, E G

    2001-08-01

    The fugacities, concentrations, or inventories of pollutants in environmental compartments as determined by multimedia environmental fate models of the Mackay type can be superimposed on each other. This is true for both steady-state (level III) and dynamic (level IV) models. Any problem in multimedia fate models with linear, time-invariant transfer and transformation coefficients can be solved through a superposition of a set of n independent solutions to a set of coupled, homogeneous first-order differential equations, where n is the number of compartments in the model. For initial condition problems in dynamic models, the initial inventories can be separated, e.g. by a compartment. The solution is obtained by adding the single-compartment solutions. For time-varying emissions, a convolution integral is used to superimpose solutions. The advantage of this approach is that the differential equations have to be solved only once. No numeric integration is required. Alternatively, the dynamic model can be simplified to algebraic equations using the Laplace transform. For time-varying emissions, the Laplace transform of the model equations is simply multiplied with the Laplace transform of the emission profile. It is also shown that the time-integrated inventories of the initial conditions problems are the same as the inventories in the steady-state problem. This implies that important properties of pollutants such as potential dose, persistence, and characteristic travel distance can be derived from the steady state.

  17. An analytical model of dynamic sliding friction during impact

    NASA Astrophysics Data System (ADS)

    Arakawa, Kazuo

    2017-01-01

    Dynamic sliding friction was studied based on the angular velocity of a golf ball during an oblique impact. This study used the analytical model proposed for the dynamic sliding friction on lubricated and non-lubricated inclines. The contact area A and sliding velocity u of the ball during impact were used to describe the dynamic friction force Fd = λAu, where λ is a parameter related to the wear of the contact area. A comparison with experimental results revealed that the model agreed well with the observed changes in the angular velocity during impact, and λAu is qualitatively equivalent to the empirical relationship, μN + μη‧dA/dt, given by the product between the frictional coefficient μ and the contact force N, and the additional term related to factor η‧ for the surface condition and the time derivative of A.

  18. Modeling the initial contact line dynamics of dewetting bubbles

    NASA Astrophysics Data System (ADS)

    Menesses, Mark; Laurent, Matthieu; Bird, James

    2016-11-01

    When a rising bubble comes to rest beneath a solid horizontal surface, the resulting liquid film dewets to minimize the total free energy of the three phase system. For partially wetting surfaces, the presence of the contact angle yields dynamics which are assumed to be governed by viscous effects. In contrast, the early-time dynamics for drops spreading on partially wetting surfaces are dominated by inertial effects. Motivated by the discrepancy between these two systems, we conduct experiments on dewetting bubbles and find that the short-time dynamics fail to obey purely viscous or inertial scalings. We draw from previously proposed dewetting and spreading models to develop a new model that can rationalize the anomalous scalings that we observe. Our results suggest that the speed that a bubble adheres to a partially wetting surface is set by an interplay of capillary waves and contact line motion. We acknowledge support from ONR, Saint-Gobain, and NSF GRFP.

  19. An analytical model of dynamic sliding friction during impact

    PubMed Central

    Arakawa, Kazuo

    2017-01-01

    Dynamic sliding friction was studied based on the angular velocity of a golf ball during an oblique impact. This study used the analytical model proposed for the dynamic sliding friction on lubricated and non-lubricated inclines. The contact area A and sliding velocity u of the ball during impact were used to describe the dynamic friction force Fd = λAu, where λ is a parameter related to the wear of the contact area. A comparison with experimental results revealed that the model agreed well with the observed changes in the angular velocity during impact, and λAu is qualitatively equivalent to the empirical relationship, μN + μη′dA/dt, given by the product between the frictional coefficient μ and the contact force N, and the additional term related to factor η′ for the surface condition and the time derivative of A. PMID:28054668

  20. Neural masses and fields in dynamic causal modeling

    PubMed Central

    Moran, Rosalyn; Pinotsis, Dimitris A.; Friston, Karl

    2013-01-01

    Dynamic causal modeling (DCM) provides a framework for the analysis of effective connectivity among neuronal subpopulations that subtend invasive (electrocorticograms and local field potentials) and non-invasive (electroencephalography and magnetoencephalography) electrophysiological responses. This paper reviews the suite of neuronal population models including neural masses, fields and conductance-based models that are used in DCM. These models are expressed in terms of sets of differential equations that allow one to model the synaptic underpinnings of connectivity. We describe early developments using neural mass models, where convolution-based dynamics are used to generate responses in laminar-specific populations of excitatory and inhibitory cells. We show that these models, though resting on only two simple transforms, can recapitulate the characteristics of both evoked and spectral responses observed empirically. Using an identical neuronal architecture, we show that a set of conductance based models—that consider the dynamics of specific ion-channels—present a richer space of responses; owing to non-linear interactions between conductances and membrane potentials. We propose that conductance-based models may be more appropriate when spectra present with multiple resonances. Finally, we outline a third class of models, where each neuronal subpopulation is treated as a field; in other words, as a manifold on the cortical surface. By explicitly accounting for the spatial propagation of cortical activity through partial differential equations (PDEs), we show that the topology of connectivity—through local lateral interactions among cortical layers—may be inferred, even in the absence of spatially resolved data. We also show that these models allow for a detailed analysis of structure–function relationships in the cortex. Our review highlights the relationship among these models and how the hypothesis asked of empirical data suggests an appropriate