Prescribed fire, soil nitrogen dynamics, and plant responses in a semiarid grassland

USDA-ARS?s Scientific Manuscript database

Fire is a key driver of the structure and function of grassland ecosystems. In arid and semiarid ecosystems, where moisture limits plant production more than light, fire can potentially affect ecosystem dynamics through changes in soil moisture, temperature, and nitrogen cycling, as well as through ...

Insect-mediated nitrogen dynamics in decomposing wood

Treesearch

Michael D. Ulyshen

2015-01-01

1.Wood decomposition is characterised by complex and poorly understood nitrogen (N) dynamics with unclear implications for forest nutrient cycling and productivity.Wood-dwelling microbes have developed unique strategies for coping with the N limitations imposed by their substrate, including the translocation of N into wood by cord-forming fungi and the fixation of...

The mechanism of enhanced wastewater nitrogen removal by photo-sequencing batch reactors based on comprehensive analysis of system dynamics within a cycle.

PubMed

Ye, Jianfeng; Liang, Junyu; Wang, Liang; Markou, Giorgos

2018-07-01

To understand the mechanism of enhanced nitrogen removal by photo-sequencing batch reactors (photo-SBRs), which incorporated microalgal photosynthetic oxygenation into the aerobic phases of a conventional cycle, this study performed comprehensive analysis of one-cycle dynamics. Under a low aeration intensity (about 0.02 vvm), a photo-SBR, illuminated with light at 92.27 μ·mol·m -2 ·s -1 , could remove 99.45% COD, 99.93% NH 4 + -N, 90.39% TN, and 95.17% TP, while the control SBR could only remove 98.36% COD, 83.51% NH 4 + -N, 78.96% TN, and 97.75% TP, for a synthetic domestic sewage. The specific oxygen production rate (SOPR) of microalgae in the photo-SBR could reach 6.63 fmol O 2 ·cell -1 ·h -1 . One-cycle dynamics shows that the enhanced nitrogen removal by photo-SBRs is related to photosynthetic oxygenation, resulting in strengthened nitrification, instead of direct nutrient uptake by microalgae. A too high light or aeration intensity could deteriorate anoxic conditions and thus adversely affect the removal of TN and TP in photo-SBRs. Copyright © 2018 Elsevier Ltd. All rights reserved.

The cyanobacterial ornithine-ammonia cycle involves an arginine dihydrolase.

PubMed

Zhang, Hao; Liu, Yujie; Nie, Xiaoqun; Liu, Lixia; Hua, Qiang; Zhao, Guo-Ping; Yang, Chen

2018-06-01

Living organisms have evolved mechanisms for adjusting their metabolism to adapt to environmental nutrient availability. Terrestrial animals utilize the ornithine-urea cycle to dispose of excess nitrogen derived from dietary protein. Here, we identified an active ornithine-ammonia cycle (OAC) in cyanobacteria through an approach combining dynamic 15 N and 13 C tracers, metabolomics, and mathematical modeling. The pathway starts with carbamoyl phosphate synthesis by the bacterial- and plant-type glutamine-dependent enzyme and ends with conversion of arginine to ornithine and ammonia by a novel arginine dihydrolase. An arginine dihydrolase-deficient mutant showed disruption of OAC and severely impaired cell growth when nitrogen availability oscillated. We demonstrated that the OAC allows for rapid remobilization of nitrogen reserves under starvation and a high rate of nitrogen assimilation and storage after the nutrient becomes available. Thus, the OAC serves as a conduit in the nitrogen storage-and-remobilization machinery in cyanobacteria and enables cellular adaptation to nitrogen fluctuations.

Effects of nitrogen additions on above- and belowground carbon dynamics in two tropical forests

Treesearch

Daniela F. Cusack; Whendee L. Silver; Margaret S. Torn; William H. McDowell

2011-01-01

Anthropogenic nitrogen (N) deposition is increasing rapidly in tropical regions, adding N to ecosystems that often have high background N availability. Tropical forests play an important role in the global carbon (C) cycle, yet the effects of N deposition on C cycling in these ecosystems are poorly understood. We used a field N-fertilization experiment in lower and...

Prescribed fire, soil inorganic nitrogen dynamics, and plant responses in a semiarid grassland

Treesearch

David J. Augustine; Paul Brewer; Dana M. Blumenthal; Justin D. Derner; Joseph C. von Fischer

2014-01-01

In arid and semiarid ecosystems, fire can potentially affect ecosystem dynamics through changes in soil moisture, temperature, and nitrogen cycling, as well as through direct effects on plant meristem mortality. We examined effects of annual and triennial prescribed fires conducted in early spring on soil moisture, temperature, and N, plant growth, and plant N content...

Assessment of watershed scale nitrogen cycling and dynamics by hydrochemical modeling

NASA Astrophysics Data System (ADS)

Onishi, T.; Hiramatsu, K.; Somura, H.

2017-12-01

Nitrogen cycling in terrestrial areas is affecting water quality and ecosystem of aquatic area such as lakes and oceans through rivers. Owing to the intensive researches on nitrogen cycling in each different type of ecosystem, we acquired rich knowledge on nitrogen cycling of each ecosystem. On the other hand, since watershed are composed of many different kinds of ecosystems, nitrogen cycling in a watershed as a complex of these ecosystems is not well quantified. Thus, comprehensive understanding of nitrogen cycling of watersheds by modelling efforts are required. In this study, we attempted to construct hydrochemical model of the Ise Bay watershed to reproduce discharge, TN, and NO3 concentration. The model is based on SWAT (Soil and Water Assessment Tools) model. As anthropogenic impacts related to both hydrological cycling and nitrogen cycling, agricultural water intake/drainage, and domestic water intake/drainage were considered. In addition, fertilizer input to agricultural lands were also considered. Calibration period and validation period are 2004-2006, and 2007-2009, respectively. As a result of calibration using 2000 times LCS (Latin Cubic Sampling) method, discharge of rivers were reproduced fairly well with NS of 0.6-0.8. In contrast, the calibration result of TN and NO3 concentration tended to show overestimate values in spite of considering parameter uncertainties. This implies that unimplemented denitrification processes in the model. Through exploring the results, it is indicated that riparian areas, and agricultural drainages might be important spots for denitrification. Based on the result, we also attempted to evaluate the impact of climate change on nitrogen cycling. Though it is fully explored, this result will also be reported.

Nitrogen dynamics in an Alaskan salt marsh following spring use by geese

USGS Publications Warehouse

Zacheis, Amy B.; Ruess, Roger W.; Hupp, Jerry W.

2002-01-01

Lesser snow geese (Anser caerulescens caerulescens) and Canada geese (Branta canadensis) use several salt marshes in Cook Inlet, Alaska, as stopover areas for brief periods during spring migration. We investigated the effects of geese on nitrogen cycling processes in Susitna Flats, one of the marshes. We compared net nitrogen mineralization, organic nitrogen pools and production in buried bags, nitrogen fixation by cyanobacteria, and soil and litter characteristics on grazed plots versus paired plots that had been exclosed from grazing for 3 years. Grazed areas had higher rates of net nitrogen mineralization in the spring and there was no effect of grazing on organic nitrogen availability. The increased mineralization rates in grazed plots could not be accounted for by alteration of litter quality, litter quantity, microclimate, or root biomass, which were not different between grazed and exclosed plots. In addition, fecal input was very slight in the year that we studied nitrogen cycling. We propose that trampling had two effects that could account for greater nitrogen availability in grazed areas: litter incorporation into soil, resulting in increased rates of decomposition and mineralization of litter material, and greater rates of nitrogen fixation by cyanobacteria on bare, trampled soils. A path analysis indicated that litter incorporation by trampling played a primary role in the nitrogen dynamics of the system, with nitrogen fixation secondary, and that fecal input was of little importance.

A reappraisal of the terrestrial nitrogen cycle: what can we learn by extracting concepts from Gaia theory?

PubMed

Cresser, Malcolm S; Aitkenhead, Matthew J; Mian, Ishaq A

2008-08-01

Although soil scientists and most environmental scientists are acutely aware of the interactions between the cycling of carbon and nitrogen, for conceptual convenience when portraying the nitrogen cycle in text books the N cycle tends to be considered in isolation from its interactions with the cycling of other elements and water, usually as a snap shot at the current time; the origins of dinitrogen are rarely considered, for example. The authors suggest that Lovelock's Gaia hypothesis provides a useful and stimulating framework for consideration of the terrestrial nitrogen cycle. If it is used, it suggests that urbanization and management of sewage, and intensive animal rearing are probably bigger global issues than nitrogen deposition from fossil fuel combustion, and that plant evolution may be driven by the requirement of locally sustainable and near optimal soil mineral N supply dynamics. This may, in turn, be partially regulating global carbon and oxygen cycles. It is suggested that pollutant N deposition may disrupt this essential natural plant and terrestrial ecosystem evolutionary process, causing biodiversity change. Interactions between the Earth and other bodies in the solar system, and possibly beyond, also need to be considered in the context of the global N cycle over geological time scales. This is because of direct potential impacts on the nitrogen content of the atmosphere, potential long-term impacts of past boloid collisions on plate tectonics and thus on global N cycling via subduction and volcanic emissions, and indirect effects upon C, O and water cycling that all may impact upon the N cycle in the long term.

Improving representation of nitrogen uptake, allocation, and carbon assimilation in the Community Land Model

NASA Astrophysics Data System (ADS)

Ghimire, B.; Riley, W. J.; Koven, C.

2013-12-01

Nitrogen is the most important nutrient limiting plant carbon assimilation and growth, and is required for production of photosynthetic enzymes, growth and maintenance respiration, and maintaining cell structure. The forecasted rise in plant available nitrogen through atmospheric nitrogen deposition and the release of locked soil nitrogen by permafrost thaw in high latitude ecosystems is likely to result in an increase in plant productivity. However a mechanistic representation of plant nitrogen dynamics is lacking in earth system models. Most earth system models ignore the dynamic nature of plant nutrient uptake and allocation, and further lack tight coupling of below- and above-ground processes. In these models, the increase in nitrogen uptake does not translate to a corresponding increase in photosynthesis parameters, such as maximum Rubisco capacity and electron transfer rate. We present an improved modeling framework implemented in the Community Land Model version 4.5 (CLM4.5) for dynamic plant nutrient uptake, and allocation to different plant parts, including leaf enzymes. This modeling framework relies on imposing a more realistic flexible carbon to nitrogen stoichiometric ratio for different plant parts. The model mechanistically responds to plant nitrogen uptake and leaf allocation though changes in photosynthesis parameters. We produce global simulations, and examine the impacts of the improved nitrogen cycling. The improved model is evaluated against multiple observations including TRY database of global plant traits, nitrogen fertilization observations and 15N tracer studies. Global simulations with this new version of CLM4.5 showed better agreement with the observations than the default CLM4.5-CN model, and captured the underlying mechanisms associated with plant nitrogen cycle.

PEATBOG: a biogeochemical model for analyzing coupled carbon and nitrogen dynamics in northern peatlands

NASA Astrophysics Data System (ADS)

Wu, Y.; Blodau, C.

2013-08-01

Elevated nitrogen deposition and climate change alter the vegetation communities and carbon (C) and nitrogen (N) cycling in peatlands. To address this issue we developed a new process-oriented biogeochemical model (PEATBOG) for analyzing coupled carbon and nitrogen dynamics in northern peatlands. The model consists of four submodels, which simulate: (1) daily water table depth and depth profiles of soil moisture, temperature and oxygen levels; (2) competition among three plants functional types (PFTs), production and litter production of plants; (3) decomposition of peat; and (4) production, consumption, diffusion and export of dissolved C and N species in soil water. The model is novel in the integration of the C and N cycles, the explicit spatial resolution belowground, the consistent conceptualization of movement of water and solutes, the incorporation of stoichiometric controls on elemental fluxes and a consistent conceptualization of C and N reactivity in vegetation and soil organic matter. The model was evaluated for the Mer Bleue Bog, near Ottawa, Ontario, with regards to simulation of soil moisture and temperature and the most important processes in the C and N cycles. Model sensitivity was tested for nitrogen input, precipitation, and temperature, and the choices of the most uncertain parameters were justified. A simulation of nitrogen deposition over 40 yr demonstrates the advantages of the PEATBOG model in tracking biogeochemical effects and vegetation change in the ecosystem.

PEATBOG: a biogeochemical model for analyzing coupled carbon and nitrogen dynamics in northern peatlands

NASA Astrophysics Data System (ADS)

Wu, Y.; Blodau, C.

2013-03-01

Elevated nitrogen deposition and climate change alter the vegetation communities and carbon (C) and nitrogen (N) cycling in peatlands. To address this issue we developed a new process-oriented biogeochemical model (PEATBOG) for analyzing coupled carbon and nitrogen dynamics in northern peatlands. The model consists of four submodels, which simulate: (1) daily water table depth and depth profiles of soil moisture, temperature and oxygen levels; (2) competition among three plants functional types (PFTs), production and litter production of plants; (3) decomposition of peat; and (4) production, consumption, diffusion and export of dissolved C and N species in soil water. The model is novel in the integration of the C and N cycles, the explicit spatial resolution belowground, the consistent conceptualization of movement of water and solutes, the incorporation of stoichiometric controls on elemental fluxes and a consistent conceptualization of C and N reactivity in vegetation and soil organic matter. The model was evaluated for the Mer Bleue Bog, near Ottawa, Ontario, with regards to simulation of soil moisture and temperature and the most important processes in the C and N cycles. Model sensitivity was tested for nitrogen input, precipitation, and temperature, and the choices of the most uncertain parameters were justified. A simulation of nitrogen deposition over 40 yr demonstrates the advantages of the PEATBOG model in tracking biogeochemical effects and vegetation change in the ecosystem.

The Interaction of Global Biochemical Cycles

NASA Technical Reports Server (NTRS)

Moore, B., III; Dastoor, M. N.

1984-01-01

The global biosphere in an exceedingly complex system. To gain an understanding of its structure and dynamic features, it is necessary not only to increase the knowledge about the detailed processes but also to develop models of how global interactions take place. Attempts to analyze the detailed physical, chemical and biological processes in this context need to be guided by an advancement of understanding of the latter. It is necessary to develop a strategy of data gathering that severs both these purposes simultaneously. The following papers deal with critical aspects in the global cycles of carbon, nitrogen, phosphorus and sulfur in details as well as the cycle of water and the flow of energy in the Earth's environment. The objective is to set partly the foundation for the development of mathematical models that allow exploration of the coupled dynamics of the global cycles of carbon, nitrogen, phosphorus, sulfur, as well as energy and water flux.

A microbial biogeochemistry network for soil carbon and nitrogen cycling and methane flux: model structure and application to Asia

NASA Astrophysics Data System (ADS)

Xu, X.; Song, C.; Wang, Y.; Ricciuto, D. M.; Lipson, D.; Shi, X.; Zona, D.; Song, X.; Yuan, F.; Oechel, W. C.; Thornton, P. E.

2017-12-01

A microbial model is introduced for simulating microbial mechanisms controlling soil carbon and nitrogen biogeochemical cycling and methane fluxes. The model is built within the CN (carbon-nitrogen) framework of Community Land Model 4.5, named as CLM-Microbe to emphasize its explicit representation of microbial mechanisms to biogeochemistry. Based on the CLM4.5, three new pools were added: bacteria, fungi, and dissolved organic matter. It has 11 pools and 34 transitional processes, compared with 8 pools and 9 transitional flow in the CLM4.5. The dissolve organic carbon was linked with a new microbial functional group based methane module to explicitly simulate methane production, oxidation, transport and their microbial controls. Comparing with CLM4.5-CN, the CLM-Microbe model has a number of new features, (1) microbial control on carbon and nitrogen flows between soil carbon/nitrogen pools; (2) an implicit representation of microbial community structure as bacteria and fungi; (3) a microbial functional-group based methane module. The model sensitivity analysis suggests the importance of microbial carbon allocation parameters on soil biogeochemistry and microbial controls on methane dynamics. Preliminary simulations validate the model's capability for simulating carbon and nitrogen dynamics and methane at a number of sites across the globe. The regional application to Asia has verified the model in simulating microbial mechanisms in controlling methane dynamics at multiple scales.

Spatial and temporal variability in the nitrogen cyclers of hypereutrophic Lake Taihu.

PubMed

Krausfeldt, Lauren E; Tang, Xiangming; van de Kamp, Jodie; Gao, Guang; Bodrossy, Levente; Boyer, Gregory L; Wilhelm, Steven W

2017-04-01

Harmful cyanobacterial blooms (cyanoHABs) are a major threat to freshwater ecosystems worldwide. Evidence suggests that both nitrogen and phosphorus are important nutrients in the development and proliferation of blooms, yet much less is known about nitrogen cycling dynamics in these systems. To assess the potential nitrogen cycling function of the cyanoHAB community, surface water samples were collected in Lake Tai (Taihu), China over a 5-month bloom event in 2014. The expression of six nitrogen cycling genes (nifH, hzsA, nxrB, nrfA, amoA, nosZ) was surveyed using a targeted microarray with probes designed to provide phylogenetic information. N-Cycling gene expression varied spatially across Taihu, most notably near the mouth of the Dapu River. Expression of nifH was observed across the lake and attributable to both Proteobacteria and Cyanobacteria: Proteobacteria were major contributors to nifH signal near shore. Other N transformations such as anaerobic ammonia oxidation and denitrification were evident in the surface waters as well. Observations in this study highlight the potential importance of heterotrophic bacteria in N-cycling associated with cyanoHABs. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Nitrogen cycling models and their application to forest harvesting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, D.W.; Dale, V.H.

1986-01-01

The characterization of forest nitrogen- (N-) cycling processes by several N-cycling models (FORCYTE, NITCOMP, FORTNITE, and LINKAGES) is briefly reviewed and evaluated against current knowledge of N cycling in forests. Some important processes (e.g., translocation within trees, N dynamics in decaying leaf litter) appear to be well characterized, whereas others (e.g., N mineralization from soil organic matter, N fixation, N dynamics in decaying wood, nitrification, and nitrate leaching) are poorly characterized, primarily because of a lack of knowledge rather than an oversight by model developers. It is remarkable how well the forest models do work in the absence of datamore » on some key processes. For those systems in which the poorly understood processes could cause major changes in N availability or productivity, the accuracy of model predictions should be examined. However, the development of N-cycling models represents a major step beyond the much simpler, classic conceptual models of forest nutrient cycling developed by early investigators. The new generation of computer models will surely improve as research reveals how key nutrient-cycling processes operate.« less

Assessing global climate-terrestrial vegetation feedbacks on carbon and nitrogen cycling in the earth system model EC-Earth

NASA Astrophysics Data System (ADS)

Wårlind, David; Miller, Paul; Nieradzik, Lars; Söderberg, Fredrik; Anthoni, Peter; Arneth, Almut; Smith, Ben

2017-04-01

There has been great progress in developing an improved European Consortium Earth System Model (EC-Earth) in preparation for the Coupled Model Intercomparison Project Phase 6 (CMIP6) and the next Assessment Report of the IPCC. The new model version has been complemented with ocean biogeochemistry, atmospheric composition (aerosols and chemistry) and dynamic land vegetation components, and has been configured to use the recommended CMIP6 forcing data sets. These new components will give us fresh insights into climate change. This study focuses on the terrestrial biosphere component Lund-Potsdam-Jena General Ecosystem Simulator (LPJ-GUESS) that simulates vegetation dynamics and compound exchange between the terrestrial biosphere and the atmosphere in EC-Earth. LPJ-GUESS allows for vegetation to dynamically evolve, depending on climate input, and in return provides the climate system and land surface scheme with vegetation-dependent fields such as vegetation types and leaf area index. We present the results of a study to examine the feedbacks between the dynamic terrestrial vegetation and the climate and their impact on the terrestrial ecosystem carbon and nitrogen cycles. Our results are based on a set of global, atmosphere-only historical simulations (1870 to 2014) with and without feedback between climate and vegetation and including or ignoring the effect of nitrogen limitation on plant productivity. These simulations show to what extent the addition degree of freedom in EC-Earth, introduced with the coupling of interactive dynamic vegetation to the atmosphere, has on terrestrial carbon and nitrogen cycling, and represent contributions to CMIP6 (C4MIP and LUMIP) and the EU Horizon 2020 project CRESCENDO.

Alteration of belowground carbon dynamics by nitrogen addition in southern California mixed conifer forests

Treesearch

N.S. Nowinski; S.E. Trumbore; G. Jimenez; M.E. Fenn

2009-01-01

Nitrogen deposition rates in southern California are the highest in North America and have had substantial effects on ecosystem functioning. We document changes in the belowground C cycle near ponderosa pine trees experiencing experimental nitrogen (N) addition (50 and 150 kg N ha−1 a−1 as slow release urea since 1997) at two end‐member...

Nutrient cycle benchmarks for earth system land model

NASA Astrophysics Data System (ADS)

Zhu, Q.; Riley, W. J.; Tang, J.; Zhao, L.

2017-12-01

Projecting future biosphere-climate feedbacks using Earth system models (ESMs) relies heavily on robust modeling of land surface carbon dynamics. More importantly, soil nutrient (particularly, nitrogen (N) and phosphorus (P)) dynamics strongly modulate carbon dynamics, such as plant sequestration of atmospheric CO2. Prevailing ESM land models all consider nitrogen as a potentially limiting nutrient, and several consider phosphorus. However, including nutrient cycle processes in ESM land models potentially introduces large uncertainties that could be identified and addressed by improved observational constraints. We describe the development of two nutrient cycle benchmarks for ESM land models: (1) nutrient partitioning between plants and soil microbes inferred from 15N and 33P tracers studies and (2) nutrient limitation effects on carbon cycle informed by long-term fertilization experiments. We used these benchmarks to evaluate critical hypotheses regarding nutrient cycling and their representation in ESMs. We found that a mechanistic representation of plant-microbe nutrient competition based on relevant functional traits best reproduced observed plant-microbe nutrient partitioning. We also found that for multiple-nutrient models (i.e., N and P), application of Liebig's law of the minimum is often inaccurate. Rather, the Multiple Nutrient Limitation (MNL) concept better reproduces observed carbon-nutrient interactions.

Patterns in stable isotope ratios of particulate material from the eastern US continental shelf

EPA Science Inventory

Stable isotope measurements of nitrogen and carbon (δ15N, δ13C) in estuarine, nearshore, and open ocean ecosystems are often utilized in order to characterize human influences, elucidate food web dynamics, or better understand nitrogen cycling. Reliable information a...

Influence of Secondary Cyclic Hardening on the Low Cycle Fatigue Behavior of Nitrogen Alloyed 316LN Stainless Steel

NASA Astrophysics Data System (ADS)

Prasad Reddy, G. V.; Sandhya, R.; Mathew, M. D.; Sankaran, S.

2013-12-01

In this article, the occurrence of secondary cyclic hardening (SCH) and its effect on high-temperature cyclic deformation and fatigue life of 316LN Stainless steel are presented. SCH is found to result from planar slip mode of deformation and enhance the degree of hardening over and above that resulted from dynamic strain aging. The occurrence of SCH is strongly governed by the applied strain amplitude, test temperature, and the nitrogen content in the 316LN SS. Under certain test conditions, SCH is noticed to decrease the low cycle fatigue life with the increasing nitrogen content.

Soil Microbial Communities and Gas Dynamics Contribute to Arbuscular Mycorrhizal Nitrogen Uptake and Transfer to Plants

NASA Astrophysics Data System (ADS)

Hestrin, R.; Harrison, M. J.; Lehmann, J.

2016-12-01

Arbuscular mycorrhizal fungi (AMF) associate with most terrestrial plants and influence ecosystem ecology and biogeochemistry. There is evidence that AMF play a role in soil nitrogen cycling, in part by taking up nitrogen and transferring it to plants. However, many aspects of this process are poorly understood, including the factors that control fungal access to nitrogen stored in soil organic matter. In this study, we used stable isotopes and root exclusion to track nitrogen movement from organic matter into AMF and host plants. AMF significantly increased total plant biomass and nitrogen content, but both AMF and other soil microbes seemed to compete with plants for nitrogen. Surprisingly, gaseous nitrogen species also contributed significantly to plant nitrogen content under alkaline soil conditions. Our current experiments investigate whether free-living microbial communities that have evolved under a soil nitrogen gradient influence AMF access to soil organic nitrogen and subsequent nitrogen transfer to plants. This research links interactions between plants, mycorrhizal symbionts, and free-living microbes with terrestrial carbon and nitrogen dynamics.

Nitrogen cycling during secondary succession in Atlantic Forest of Bahia, Brazil.

PubMed

Winbourne, Joy B; Feng, Aida; Reynolds, Lovinia; Piotto, Daniel; Hastings, Meredith G; Porder, Stephen

2018-01-22

Carbon accumulation in tropical secondary forests may be limited in part by nitrogen (N) availability, but changes in N during tropical forest succession have rarely been quantified. We explored N cycle dynamics across a chronosequence of secondary tropical forests in the Mata Atlântica of Bahia, Brazil in order to understand how quickly the N cycle recuperates. We hypothesized that N fixation would decline over the course of succession as N availability and N gaseous losses increased. We measured N fixation, KCl-extractable N, net mineralization and nitrification, resin-strip sorbed N, gaseous N emissions and the soil δ 15 N in stands that were 20, 35, 50, and > 50 years old. Contrary to our initial hypothesis, we found no significant differences between stand ages in any measured variable. Our findings suggest that secondary forests in this region of the Atlantic forest reached pre-disturbance N cycling dynamics after just 20 years of succession. This result contrasts with previous study in the Amazon, where the N cycle recovered slowly after abandonment from pasture reaching pre-disturbance N cycling levels after ~50 years of succession. Our results suggest the pace of the N cycle, and perhaps tropical secondary forest, recovery, may vary regionally.

Similar below-ground carbon cycling dynamics but contrasting modes of nitrogen cycling between arbuscular mycorrhizal and ectomycorrhizal forests.

PubMed

Lin, Guigang; McCormack, M Luke; Ma, Chengen; Guo, Dali

2017-02-01

Compared with ectomycorrhizal (ECM) forests, arbuscular mycorrhizal (AM) forests are hypothesized to have higher carbon (C) cycling rates and a more open nitrogen (N) cycle. To test this hypothesis, we synthesized 645 observations, including 22 variables related to below-ground C and N dynamics from 100 sites, where AM and ECM forests co-occurred at the same site. Leaf litter quality was lower in ECM than in AM trees, leading to greater forest floor C stocks in ECM forests. By contrast, AM forests had significantly higher mineral soil C concentrations, and this result was strongly mediated by plant traits and climate. No significant differences were found between AM and ECM forests in C fluxes and labile C concentrations. Furthermore, inorganic N concentrations, net N mineralization and nitrification rates were all higher in AM than in ECM forests, indicating 'mineral' N economy in AM but 'organic' N economy in ECM trees. AM and ECM forests show systematic differences in mineral vs organic N cycling, and thus mycorrhizal type may be useful in predicting how different tree species respond to multiple environmental change factors. By contrast, mycorrhizal type alone cannot reliably predict below-ground C dynamics without considering plant traits and climate. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Long-term applications of untreated and alum-treated poultry litter drive soil nitrogen concentrations and associated microbial community dynamics

USDA-ARS?s Scientific Manuscript database

Aluminum sulfate (alum)-treatment retains ammonia in poultry litter, potentially altering nitrogen cycling after application to soil. The objective of this research was to assess if eight and nine years of annual application of untreated or alum-treated poultry litters or ammonium nitrate have resul...

Functional groups show distinct differences in nitrogen cycling during early stand development: implications for forest management

Treesearch

Doug P. Aubrey; David R. Coyle; Mark D. Coleman

2012-01-01

Background and aims Nutrient acquisition of forest stands is controlled by soil resource availability and belowground production, but tree species are rarely compared in this regard. Here, we examine ecological and management implications of nitrogen (N) dynamics during early forest stand development in productive commercial tree species with narrow (Populus...

Integration of nitrogen dynamics into the Noah-MP land surface model v1.1 for climate and environmental predictions

NASA Astrophysics Data System (ADS)

Cai, X.; Yang, Z.-L.; Fisher, J. B.; Zhang, X.; Barlage, M.; Chen, F.

2016-01-01

Climate and terrestrial biosphere models consider nitrogen an important factor in limiting plant carbon uptake, while operational environmental models view nitrogen as the leading pollutant causing eutrophication in water bodies. The community Noah land surface model with multi-parameterization options (Noah-MP) is unique in that it is the next-generation land surface model for the Weather Research and Forecasting meteorological model and for the operational weather/climate models in the National Centers for Environmental Prediction. In this study, we add a capability to Noah-MP to simulate nitrogen dynamics by coupling the Fixation and Uptake of Nitrogen (FUN) plant model and the Soil and Water Assessment Tool (SWAT) soil nitrogen dynamics. This model development incorporates FUN's state-of-the-art concept of carbon cost theory and SWAT's strength in representing the impacts of agricultural management on the nitrogen cycle. Parameterizations for direct root and mycorrhizal-associated nitrogen uptake, leaf retranslocation, and symbiotic biological nitrogen fixation are employed from FUN, while parameterizations for nitrogen mineralization, nitrification, immobilization, volatilization, atmospheric deposition, and leaching are based on SWAT. The coupled model is then evaluated at the Kellogg Biological Station - a Long Term Ecological Research site within the US Corn Belt. Results show that the model performs well in capturing the major nitrogen state/flux variables (e.g., soil nitrate and nitrate leaching). Furthermore, the addition of nitrogen dynamics improves the modeling of net primary productivity and evapotranspiration. The model improvement is expected to advance the capability of Noah-MP to simultaneously predict weather and water quality in fully coupled Earth system models.

Light-dark (12:12) cycle of carbon and nitrogen metabolism in Crocosphaera watsonii WH8501: relation to the cell cycle.

PubMed

Dron, Anthony; Rabouille, Sophie; Claquin, Pascal; Le Roy, Bertrand; Talec, Amélie; Sciandra, Antoine

2012-04-01

This study provides with original data sets on the physiology of the unicellular diazotrophic cyanobacterium Crocosphaera watsonii WH8501, maintained in continuous culture in conditions of obligate diazotrophy. Cultures were exposed to a 12:12 light-dark regime, representative of what they experience in nature and where growth is expected to be balanced. Nitrogen and carbon metabolism were monitored at high frequency and their dynamics was compared with the cell cycle. Results reveal a daily cycle in the physiological and biochemical parameters, tightly constrained by the timely decoupled processes of N(2) fixation and carbon acquisition. The cell division rate increased concomitantly to carbon accumulation and peaked 6 h into the light. The carbon content reached a maximum at the end of the light phase. N(2) fixation occurred mostly during the dark period and peaked between 9 and 10 h into the night, while DNA synthesis, reflected by DNA fluorescence, increased until the end of the night. Consequently, cells in G1- and S-phases present a marked decrease in their C:N ratio. Nitrogen acquisition through N(2) fixation exceeded 1.3- to 3-fold the nitrogen requirements for growth, suggesting that important amounts of nitrogen are excreted even under conditions supposed to favour balanced, carbon and nitrogen acquisitions. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

A dynamic nitrogen budget model of a Pacific Northwest salt ...

EPA Pesticide Factsheets

The role of salt marshes as either nitrogen sinks or sources in relation to their adjacent estuaries has been a focus of ecosystem service research for many decades. The complex hydrology of these systems is driven by tides, upland surface runoff, precipitation, evapotranspiration, and groundwater inputs, all of which can vary significantly on timescales ranging from sub-daily to seasonal. Additionally, many of these hydrologic drivers may vary with a changing climate. Due to this temporal variation in hydrology, it is difficult to represent salt marsh nitrogen budgets as steady-state models. A dynamic nitrogen budget model that varies based on hydrologic conditions may more accurately describe the role of salt marshes in nitrogen cycling. In this study we aim to develop a hydrologic model that is coupled with a process-based nitrogen model to simulate nitrogen dynamics at multiple temporal scales. To construct and validate our model we will use hydrologic and nitrogen species data collected from 2010 to present, from a 1.8 hectare salt marsh in the Yaquina Estuary, OR, USA. Hydrologic data include water table levels at two transects, upland tributary flow, tidal channel stage and flow, and vertical hydraulic head gradients. Nitrogen pool data include concentrations of nitrate and ammonium in porewater, tidal channel water, and extracted from soil cores. Nitrogen flux data include denitrification rates, nitrogen concentrations in upland runoff, and tida

Elucidating the nutritional dynamics of fungi using stable isotopes

Treesearch

Jordan R. Mayor; Edward A.G. Schuur; Terry W. Henkel

2009-01-01

Mycorrhizal and saprotrophic (SAP) fungi are essential to terrestrial element cycling due to their uptake of mineral nutrients and decomposition of detritus. Linking these ecological roles to specific fungi is necessary to improve our understanding of global nutrient cycling, fungal ecophysiology, and forest ecology. Using discriminant analyses of nitrogen and carbon...

Effect of nitrogen on high temperature low cycle fatigue behaviors in type 316L stainless steel

NASA Astrophysics Data System (ADS)

Kim, Dae Whan; Ryu, Woo-Seog; Hong, Jun Hwa; Choi, Si-Kyung

1998-04-01

Strain-controlled low cycle fatigue (LCF) tests were conducted in the temperature range of RT-600°C and air atmosphere to investigate the nitrogen effect on LCF behavior of type 316L stainless steels with different nitrogen contents (0.04-0.15%). The waveform of LCF was a symmetrical triangle with a strain amplitude of ±0.5% and a constant strain rate of 2×10 -3/s was employed for most tests. Cyclic stress response of the alloys exhibited a gradual cyclic softening at RT, but a cyclic hardening at an early stage of fatigue life at 300-600°C. The hardening at high temperature was attributed to dynamic strain aging (DSA). Nitrogen addition decreased hardening magnitude (maximum cyclic stress — first cyclic stress) because nitrogen retarded DSA for these conditions. The dislocation structures were changed from cell to planar structure with increasing temperature and nitrogen addition by DSA and short range order (SRO). Fatigue life was a maximum at 0.1% nitrogen content, which was attributed to the balance between DSA and SRO.

Nitrogen dynamics of spring-fed wetland ecosystems of the Sierra Nevada foothills oak woodland

Treesearch

Randall D. Jackson; Barbara Allen-Diaz

2002-01-01

Spring-fed wetlands are small, highly productive, patchy ecosystems nested within the oak woodland/annual grassland matrix of the Sierra Nevada foothills. In an effort to place these wetlands in a landscape context, we described seasonal variation (1999-2000 growing season) in nitrogen cycling parameters at 6 spring-fed wetland sites of the Sierra Nevada foothill oak...

Effects of nitrogen deposition on carbon cycle in terrestrial ecosystems of China: A meta-analysis.

PubMed

Chen, Hao; Li, Dejun; Gurmesa, Geshere A; Yu, Guirui; Li, Linghao; Zhang, Wei; Fang, Huajun; Mo, Jiangming

2015-11-01

Nitrogen (N) deposition in China has increased greatly, but the general impact of elevated N deposition on carbon (C) dynamics in Chinese terrestrial ecosystems is not well documented. In this study we used a meta-analysis method to compile 88 studies on the effects of N deposition C cycling on Chinese terrestrial ecosystems. Our results showed that N addition did not change soil C pools but increased above-ground plant C pool. A large decrease in below-ground plant C pool was observed. Our result also showed that the impacts of N addition on ecosystem C dynamics depend on ecosystem type and rate of N addition. Overall, our findings suggest that 1) decreased below-ground plant C pool may limit long-term soil C sequestration; and 2) it is better to treat N-rich and N-limited ecosystems differently in modeling effects of N deposition on ecosystem C cycle. Copyright © 2015 Elsevier Ltd. All rights reserved.

Integration of nitrogen dynamics into the Noah-MP land surface model v1.1 for climate and environmental predictions

DOE PAGES

Cai, X.; Yang, Z. -L.; Fisher, J. B.; ...

2016-01-15

Climate and terrestrial biosphere models consider nitrogen an important factor in limiting plant carbon uptake, while operational environmental models view nitrogen as the leading pollutant causing eutrophication in water bodies. The community Noah land surface model with multi-parameterization options (Noah-MP) is unique in that it is the next-generation land surface model for the Weather Research and Forecasting meteorological model and for the operational weather/climate models in the National Centers for Environmental Prediction. Here in this study, we add a capability to Noah-MP to simulate nitrogen dynamics by coupling the Fixation and Uptake of Nitrogen (FUN) plant model and the Soilmore » and Water Assessment Tool (SWAT) soil nitrogen dynamics. This model development incorporates FUN's state-of-the-art concept of carbon cost theory and SWAT's strength in representing the impacts of agricultural management on the nitrogen cycle. Parameterizations for direct root and mycorrhizal-associated nitrogen uptake, leaf retranslocation, and symbiotic biological nitrogen fixation are employed from FUN, while parameterizations for nitrogen mineralization, nitrification, immobilization, volatilization, atmospheric deposition, and leaching are based on SWAT. The coupled model is then evaluated at the Kellogg Biological Station – a Long Term Ecological Research site within the US Corn Belt. Results show that the model performs well in capturing the major nitrogen state/flux variables (e.g., soil nitrate and nitrate leaching). Furthermore, the addition of nitrogen dynamics improves the modeling of net primary productivity and evapotranspiration. The model improvement is expected to advance the capability of Noah-MP to simultaneously predict weather and water quality in fully coupled Earth system models.« less

Integration of nitrogen dynamics into the Noah-MP land surface model v1.1 for climate and environmental predictions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cai, X.; Yang, Z. -L.; Fisher, J. B.

Climate and terrestrial biosphere models consider nitrogen an important factor in limiting plant carbon uptake, while operational environmental models view nitrogen as the leading pollutant causing eutrophication in water bodies. The community Noah land surface model with multi-parameterization options (Noah-MP) is unique in that it is the next-generation land surface model for the Weather Research and Forecasting meteorological model and for the operational weather/climate models in the National Centers for Environmental Prediction. Here in this study, we add a capability to Noah-MP to simulate nitrogen dynamics by coupling the Fixation and Uptake of Nitrogen (FUN) plant model and the Soilmore » and Water Assessment Tool (SWAT) soil nitrogen dynamics. This model development incorporates FUN's state-of-the-art concept of carbon cost theory and SWAT's strength in representing the impacts of agricultural management on the nitrogen cycle. Parameterizations for direct root and mycorrhizal-associated nitrogen uptake, leaf retranslocation, and symbiotic biological nitrogen fixation are employed from FUN, while parameterizations for nitrogen mineralization, nitrification, immobilization, volatilization, atmospheric deposition, and leaching are based on SWAT. The coupled model is then evaluated at the Kellogg Biological Station – a Long Term Ecological Research site within the US Corn Belt. Results show that the model performs well in capturing the major nitrogen state/flux variables (e.g., soil nitrate and nitrate leaching). Furthermore, the addition of nitrogen dynamics improves the modeling of net primary productivity and evapotranspiration. The model improvement is expected to advance the capability of Noah-MP to simultaneously predict weather and water quality in fully coupled Earth system models.« less

Placing an upper limit on cryptic marine sulphur cycling.

PubMed

Johnston, D T; Gill, B C; Masterson, A; Beirne, E; Casciotti, K L; Knapp, A N; Berelson, W

2014-09-25

A quantitative understanding of sources and sinks of fixed nitrogen in low-oxygen waters is required to explain the role of oxygen-minimum zones (OMZs) in controlling the fixed nitrogen inventory of the global ocean. Apparent imbalances in geochemical nitrogen budgets have spurred numerous studies to measure the contributions of heterotrophic and autotrophic N2-producing metabolisms (denitrification and anaerobic ammonia oxidation, respectively). Recently, 'cryptic' sulphur cycling was proposed as a partial solution to the fundamental biogeochemical problem of closing marine fixed-nitrogen budgets in intensely oxygen-deficient regions. The degree to which the cryptic sulphur cycle can fuel a loss of fixed nitrogen in the modern ocean requires the quantification of sulphur recycling in OMZ settings. Here we provide a new constraint for OMZ sulphate reduction based on isotopic profiles of oxygen ((18)O/(16)O) and sulphur ((33)S/(32)S, (34)S/(32)S) in seawater sulphate through oxygenated open-ocean and OMZ-bearing water columns. When coupled with observations and models of sulphate isotope dynamics and data-constrained model estimates of OMZ water-mass residence time, we find that previous estimates for sulphur-driven remineralization and loss of fixed nitrogen from the oceans are near the upper limit for what is possible given in situ sulphate isotope data.

Effects of changes in nutrient loading and composition on hypoxia dynamics and internal nutrient cycling of a stratified coastal lagoon

NASA Astrophysics Data System (ADS)

Zhu, Yafei; McCowan, Andrew; Cook, Perran L. M.

2017-10-01

The effects of changes in catchment nutrient loading and composition on the phytoplankton dynamics, development of hypoxia and internal nutrient dynamics in a stratified coastal lagoon system (the Gippsland Lakes) were investigated using a 3-D coupled hydrodynamic biogeochemical water quality model. The study showed that primary production was equally sensitive to changed dissolved inorganic and particulate organic nitrogen loads, highlighting the need for a better understanding of particulate organic matter bioavailability. Stratification and sediment carbon enrichment were the main drivers for the hypoxia and subsequent sediment phosphorus release in Lake King. High primary production stimulated by large nitrogen loading brought on by a winter flood contributed almost all the sediment carbon deposition (as opposed to catchment loads), which was ultimately responsible for summer bottom-water hypoxia. Interestingly, internal recycling of phosphorus was more sensitive to changed nitrogen loads than total phosphorus loads, highlighting the potential importance of nitrogen loads exerting a control over systems that become phosphorus limited (such as during summer nitrogen-fixing blooms of cyanobacteria). Therefore, the current study highlighted the need to reduce both total nitrogen and total phosphorus for water quality improvement in estuarine systems.

Fire dynamics and implications for nitrogen cycling in boreal forests

USGS Publications Warehouse

Harden, J.W.; Mack, M.; Veldhuis, H.; Gower, S.T.

2003-01-01

We used a dynamic, long-term mass balance approach to track cumulative carbon (C) and nitrogen (N) losses to fire in boreal Manitoba over the 6500 years since deglaciation. Estimated C losses to decomposition and fire, combined with measurements of N pools in mature and burned forest floors, suggest that loss of N by combustion has likely resulted in a long-term loss that exceeds the amount of N stored in soil today by 2 to 3 times. These estimates imply that biological N fixation rates could be as high as 5 to 10 times atmospheric deposition rates in boreal regions. At the site scale, the amount of N lost is due to N content of fuels, which varies by stand type and fire severity, which in turn vary with climate and fire dynamics. The interplay of fire frequency, fire severity, and N partitioning during regrowth are important for understanding rates and sustainability of nutrient and carbon cycling over millenia and over broad regions.

Compound-specific stable isotopes of organic compounds from lake sediments track recent environmental changes in an alpine ecosystem, Rocky Mountain National Park, Colorado

USGS Publications Warehouse

Enders, S.K.; Pagani, M.; Pantoja, S.; Baron, Jill S.; Wolfe, A.P.; Pedentchouk, N.; Nunez, L.

2008-01-01

Compound-specific nitrogen, carbon, and hydrogen isotope records from sediments of Sky Pond, an alpine lake in Rocky Mountain National Park (Colorado, United States of America), were used to evaluate factors contributing to changes in diatom assemblages and bulk organic nitrogen isotope records identified in lake sediments across Colorado, Wyoming, and southern Montana. Nitrogen isotopic records of purified algal chlorins indicate a substantial shift in nitrogen cycling in the region over the past ???60 yr. Temporal changes in the growth characteristics of algae, captured in carbon isotope records in and around Sky Pond, as well as a -60??? excursion in the hydrogen isotope composition of algal-derived palmitic acid, are coincident with changes in nitrogen cycling. The confluence of these trends is attributed to an increase in biologically available nitrogenous compounds caused by an expansion of anthropogenic influences and temporal changes in catchment hydrology and nutrient delivery associated with meltwater dynamics. ?? 2008, by the American Society of Limnology and Oceanography, Inc.

Quantifying the Global Nitrous Oxide Emissions Using a Trait-based Biogeochemistry Model

NASA Astrophysics Data System (ADS)

Zhuang, Q.; Yu, T.

2017-12-01

Nitrogen is an essential element for the global biogeochemical cycle. It is a key nutrient for organisms and N compounds including nitrous oxide significantly influence the global climate. The activities of bacteria and archaea are responsible for the nitrification and denitrification in a wide variety of environments, so microbes play an important role in the nitrogen cycle in soils. To date, most existing process-based models treated nitrification and denitrification as chemical reactions driven by soil physical variables including soil temperature and moisture. In general, the effect of microbes on N cycling has not been modeled in sufficient details. Soil organic carbon also affects the N cycle because it supplies energy to microbes. In my study, a trait-based biogeochemistry model quantifying N2O emissions from the terrestrial ecosystems is developed based on an extant process-based model TEM (Terrestrial Ecosystem Model). Specifically, the improvement to TEM includes: 1) Incorporating the N fixation process to account for the inflow of N from the atmosphere to biosphere; 2) Implementing the effects of microbial dynamics on nitrification process; 3) fully considering the effects of carbon cycling on N nitrogen cycling following the principles of stoichiometry of carbon and nitrogen in soils, plants, and microbes. The difference between simulations with and without the consideration of bacterial activity lies between 5% 25% based on climate conditions and vegetation types. The trait based module allows a more detailed estimation of global N2O emissions.

Effects of nitrogen deposition on carbon and nitrogen dynamics: a model-data comparison at an alpine meadow on the Qinghai Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, L.; Li, P.; Fang, H.; Ren, X.; He, H.; Li, Y.; Yu, G.

2015-12-01

Significant increases in atmospheric nitrogen (N) deposition due to human activities are likely to alter the carbon (C) and nitrogen cycles of terrestrial ecosystems. N deposition has the potential to affect photosynthesis, plant and soil respiration, and thus vegetation and soil C storages. Accurate estimation of the change in plant uptake of carbon dioxide due to N deposition is essential to dealing with the climate change. Among the 11 earth system models which provide climate projection for the Fifth Assessment Report of the Intergovernmental Panel for Climate Change, only the community land model (CLM-CN) used in two of them includes a dynamic terrestrial nitrogen cycle. However, the responses of carbon and nitrogen dynamics to nitrogen deposition in CLM-CN have not been well evaluated. In this study, we examine the performance of CLM-CN (version 4.0) in simulating how leaf N content, leaf area index (LAI), aboveground biomass, soil respiration, and soil organic C and N respond to low-level N addition (40 kg N m-2 yr-1) using observations at an alpine meadow on the Qinghai Tibetan Plateau. CLM-CN well reproduced the positive responses of LAI and soil respiration (+13% and +8%) to the N addition, compared to observed increases (+14% and +12%). However, the CLM-CN leaf N content response to N addition (+13%) was larger than observed (+5%), and modeled response of aboveground biomass C (+5%) was smaller than observed (+12%). Moreover, modeled slight positive response (+0.2%) of soil organic C to N addition was inconsistent with observed decrease of 8.8%. Additional manipulation experimental data are required for evaluating and improving models in simulating responses of plant N uptake, C and N allocation, litter and soil organic matter decomposition to N deposition.

An Overview of Nitrogen Cycling in a Semiarid Savanna: Some Implications for Management and Conservation in a Large African Park

NASA Astrophysics Data System (ADS)

Coetsee, Corli; Jacobs, Shayne; Govender, Navashni

2012-02-01

Nitrogen (N) is a major control on primary productivity and hence on the productivity and diversity of secondary producers and consumers. As such, ecosystem structure and function cannot be understood without a comprehensive understanding of N cycling and dynamics. This overview describes the factors that govern N distribution and dynamics and the consequences that variable N dynamics have for structure, function and thresholds of potential concern (TPCs) for management of a semiarid southern African savanna. We focus on the Kruger National Park (KNP), a relatively intact savanna, noted for its wide array of animal and plant species and a prized tourist destination. KNP's large size ensures integrity of most ecosystem processes and much can be learned about drivers of ecosystem structure and function using this park as a baseline. Our overview shows that large scale variability in substrates exists, but do not necessarily have predictable consequences for N cycling. The impact of major drivers such as fire is complex; at a landscape scale little differences in stocks and cycling were found, though at a smaller scale changes in woody cover can lead to concomitant changes in total N. Contrasting impacts of browsers and grazers on N turnover has been recorded. Due to the complexity of this ecosystem, we conclude that it will be complicated to draw up TPCs for most transformations and pools involved with the N cycle. However, we highlight in which cases the development of TPCs will be possible.

Earth System Model Needs for Including the Interactive Representation of Nitrogen Deposition and Drought Effects on Forested Ecosystems

DOE PAGES

Drewniak, Beth; Gonzalez-Meler, Miquel

2017-07-27

One of the biggest uncertainties of climate change is determining the response of vegetation to many co-occurring stressors. In particular, many forests are experiencing increased nitrogen deposition and are expected to suffer in the future from increased drought frequency and intensity. Interactions between drought and nitrogen deposition are antagonistic and non-additive, which makes predictions of vegetation response dependent on multiple factors. The tools we use (Earth system models) to evaluate the impact of climate change on the carbon cycle are ill equipped to capture the physiological feedbacks and dynamic responses of ecosystems to these types of stressors. In this manuscript,more » we review the observed effects of nitrogen deposition and drought on vegetation as they relate to productivity, particularly focusing on carbon uptake and partitioning. We conclude there are several areas of model development that can improve the predicted carbon uptake under increasing nitrogen deposition and drought. This includes a more flexible framework for carbon and nitrogen partitioning, dynamic carbon allocation, better representation of root form and function, age and succession dynamics, competition, and plant modeling using trait-based approaches. These areas of model development have the potential to improve the forecasting ability and reduce the uncertainty of climate models.« less

Earth System Model Needs for Including the Interactive Representation of Nitrogen Deposition and Drought Effects on Forested Ecosystems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Drewniak, Beth; Gonzalez-Meler, Miquel

One of the biggest uncertainties of climate change is determining the response of vegetation to many co-occurring stressors. In particular, many forests are experiencing increased nitrogen deposition and are expected to suffer in the future from increased drought frequency and intensity. Interactions between drought and nitrogen deposition are antagonistic and non-additive, which makes predictions of vegetation response dependent on multiple factors. The tools we use (Earth system models) to evaluate the impact of climate change on the carbon cycle are ill equipped to capture the physiological feedbacks and dynamic responses of ecosystems to these types of stressors. In this manuscript,more » we review the observed effects of nitrogen deposition and drought on vegetation as they relate to productivity, particularly focusing on carbon uptake and partitioning. We conclude there are several areas of model development that can improve the predicted carbon uptake under increasing nitrogen deposition and drought. This includes a more flexible framework for carbon and nitrogen partitioning, dynamic carbon allocation, better representation of root form and function, age and succession dynamics, competition, and plant modeling using trait-based approaches. These areas of model development have the potential to improve the forecasting ability and reduce the uncertainty of climate models.« less

Contributions of secondary forest and nitrogen dynamics to terrestrial carbon uptake

NASA Astrophysics Data System (ADS)

Yang, X.; Richardson, T. K.; Jain, A. K.

2010-10-01

We use a terrestrial carbon-nitrogen cycle component of the Integrated Science Assessment Model (ISAM) to investigate the impacts of nitrogen dynamics on regrowing secondary forests over the 20th century. We further examine what the impacts of nitrogen deposition and land use change history are on terrestrial carbon uptake since preindustrial time. Our results suggest that global total net land use emissions for the 1990s associated with changes in cropland, pastureland, and wood harvest are 1.22 GtC/yr. Without considering the secondary forest regrowth, the estimated net global total land use emissions are 1.58 GtC/yr or about 0.36 GtC/yr higher than if secondary forest regrowth is considered. Results also show that without considering the nitrogen dynamics and deposition, the estimated global total secondary forest sink for the 1990s is 0.90 GtC/yr or about 0.54 GtC/yr higher than estimates that include the impacts of nitrogen dynamics and deposition. Nitrogen deposition alone is responsible for about 0.13 GtC/yr of the total secondary forest sink. While nitrogen is not a limiting nutrient in the intact primary forests in tropical regions, our study suggests that nitrogen becomes a limiting nutrient for regrowing secondary forests of the tropical regions, in particular Latin America and Tropical Africa. This is because land use change activities, especially wood harvest, removes large amounts of nitrogen from the system when slash is burnt or wood is removed for harvest. However, our model results show that carbon uptake is enhanced in the tropical secondary forests of the Indian region. We argue that this may be due to enhanced nitrogen mineralization and increased nitrogen availability following land use change in the Indian tropical forest ecosystems. Results also demonstrate that there is a significant amount of carbon accumulating in the Northern Hemisphere where most land use changes and forest regrowth has occurred in recent decades. This study indicates the significance of secondary forests to terrestrial carbon sinks, the importance of nitrogen dynamics to the magnitude of secondary forests carbon uptake, and therefore the need to include both primary and secondary forests and nitrogen dynamics in terrestrial ecosystem models.

Contributions of secondary forest and nitrogen dynamics to terrestrial carbon uptake

NASA Astrophysics Data System (ADS)

Yang, X.; Richardson, T. K.; Jain, A. K.

2010-04-01

We use a terrestrial carbon-nitrogen cycle component of the Integrated Science Assessment Model (ISAM) to investigate the impacts of nitrogen dynamics on regrowing secondary forests over the 20th century. We further examine what the impacts of nitrogen deposition and land use change history are on terrestrial carbon uptake since preindustrial time. Our results suggest that global total net land use emissions for the 1990s associated with changes in cropland, pastureland, and wood harvest are 1.22 GtC/yr. Without considering the secondary forest regrowth, the estimated net global total land use emissions are 1.58 GtC/yr or about 0.36 GtC/yr higher than if secondary forest regrowth is considered. Results also show that without considering the nitrogen dynamics and deposition, the estimated global total secondary forest sink for the 1990s is 0.90 GtC/yr or about 0.54 GtC/yr higher than estimates that include the impacts of nitrogen dynamics and deposition. Nitrogen deposition alone is responsible for about 0.13 GtC/yr of the total secondary forest sink. While nitrogen is not a limiting nutrient in the intact primary forests in tropical regions, our study suggests that nitrogen becomes a limiting nutrient for regrowing secondary forests of the tropical regions, in particular Latin America and Tropical Africa. This is because land use change activities, especially wood harvest, removes large amounts of nitrogen from the system when slash is burnt or wood is removed for harvest. However, our model results show that carbon uptake is enhanced in the tropical secondary forests of the Indian region. We argue that this may be due to enhanced nitrogen mineralization and increased nitrogen availability following land use change in the Indian tropical forest ecosystems. Results also demonstrate that there is a significant amount of carbon accumulating in the Northern Hemisphere where most land use changes and forest regrowth has occurred in recent decades. This study indicates the significance of secondary forests to terrestrial carbon sinks, the importance of nitrogen dynamics to the magnitude of secondary forests carbon uptake, and therefore the need to include both primary and secondary forests and nitrogen dynamics in terrestrial ecosystem models.

Late Pleistocene climate change, nutrient cycling, and the megafaunal extinctions in North America

NASA Astrophysics Data System (ADS)

Faith, J. Tyler

2011-06-01

This study proposes an ecological mechanism for the terminal Pleistocene population collapse and subsequent extinction of North American megafauna. Observations of modern ecosystems indicate that feedback mechanisms between plant nutrient content, nitrogen cycling, and herbivore-plant interactions can vary between a nutrient accelerating mode favoring increased herbivore biomass and a nutrient decelerating mode characterized by reduced herbivore biomass. These alternate modes are determined largely by plant nitrogen content. Plant nitrogen content is known to be influenced by atmospheric CO 2 concentrations, temperature, and precipitation. It is argued that Lateglacial climate change, particularly increases in atmospheric CO 2, shifted herbivore-ecosystem dynamics from a nutrient accelerating mode to a nutrient decelerating mode at the end of the Pleistocene, leading to reduced megafaunal population densities. An examination of Sporormiella records - a proxy for megaherbivore biomass - indicates that megafaunal populations collapsed first in the east and later in the west, possibly reflecting regional differences in precipitation or vegetation structure. The fortuitous intersection of the climatically driven nitrogen sink, followed by any one or combination of subsequent anthropogenic, environmental, or extra-terrestrial mechanisms could explain why extinctions took place at the end of the Pleistocene rather than during previous glacial-interglacial cycles.

Hydration status and diurnal trophic interactions shape microbial community function in desert biocrusts

NASA Astrophysics Data System (ADS)

Kim, Minsu; Or, Dani

2017-12-01

Biological soil crusts (biocrusts) are self-organised thin assemblies of microbes, lichens, and mosses that are ubiquitous in arid regions and serve as important ecological and biogeochemical hotspots. Biocrust ecological function is intricately shaped by strong gradients of water, light, oxygen, and dynamics in the abundance and spatial organisation of the microbial community within a few millimetres of the soil surface. We report a mechanistic model that links the biophysical and chemical processes that shape the functioning of biocrust representative microbial communities that interact trophically and respond dynamically to cycles of hydration, light, and temperature. The model captures key features of carbon and nitrogen cycling within biocrusts, such as microbial activity and distribution (during early stages of biocrust establishment) under diurnal cycles and the associated dynamics of biogeochemical fluxes at different hydration conditions. The study offers new insights into the highly dynamic and localised processes performed by microbial communities within thin desert biocrusts.

Nitrogen cycle dynamics in the Late Cretaceous Greenhouse

NASA Astrophysics Data System (ADS)

Junium, Christopher K.; Meyers, Stephen R.; Arthur, Michael A.

2018-01-01

Great attention has been paid to the origin of anomalously low nitrogen isotope values during the Late Cretaceous. Nitrogen isotope values are often as low as - 3 ‰ and are typically less than + 2 ‰, even in relatively organic matter-lean sediments. Here we evaluate nitrogen isotope variability during a relatively quiescent phase of the Late Cretaceous Greenhouse, between Oceanic Anoxic Events 2 and 3, using the black shales of Demerara Rise (DR). Selection of this site allows us to isolate some of the factors that control nitrogen cycle dynamics and contribute to low nitrogen isotope values. New N-isotope measurements from ODP Site 1259 reveal δ15N values that range from + 0.2 ‰ to -3.5‰ and oscillate by 1.5‰ to 3‰ over 1.6 million years (Ma). Temporal calibration of our data using a new astronomical time scale reveals a strong ∼100 thousand year (ka) eccentricity cyclicity in δ15N. We attribute this cyclicity to oscillations in the position of the intertropical convergence zone (ITCZ) over DR that modulate upwelling intensity, chemocline depth and the degree of 15N-depletion. We also recognize a statistically significant correlation (p = 0.0022) between the TEX86 indices and δ15N, with the lowest δ15N corresponding to the highest TEX86 indices. This relationship suggests that the activity and ecology of ammonia oxidizing Thaumarchaeota and the δ15N of dissolved inorganic nitrogen utilized by primary producers are linked. We therefore interpret the observed variability in the δ15N data and TEX86 indices as primarily reflecting fluctuation of upwelling intensity and chemocline depth, and the significant inverse relationship between these data sets suggests that caution should be exercised when interpreting the TEX86 in terms of temperature in similar paleoenvironmental settings.

Combined effects of short-term rainfall patterns and soil texture on nitrogen cycling -- A Modeling Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gu, C.; Riley, W.J.

2009-11-01

Precipitation variability and magnitude are expected to change in many parts of the world over the 21st century. We examined the potential effects of intra-annual rainfall patterns on soil nitrogen (N) transport and transformation in the unsaturated soil zone using a deterministic dynamic modeling approach. The model (TOUGHREACT-N), which has been tested and applied in several experimental and observational systems, mechanistically accounts for microbial activity, soil-moisture dynamics that respond to precipitation variability, and gaseous and aqueous tracer transport in the soil. Here, we further tested and calibrated the model against data from a precipitation variability experiment in a tropical systemmore » in Costa Rica. The model was then used to simulate responses of soil moisture, microbial dynamics, nitrogen (N) aqueous and gaseous species, N leaching, and N trace-gas emissions to changes in rainfall patterns; the effect of soil texture was also examined. The temporal variability of nitrate leaching and NO, N{sub 2}, and N{sub 2}O effluxes were significantly influenced by rainfall dynamics. Soil texture combined with rainfall dynamics altered soil moisture dynamics, and consequently regulated soil N responses to precipitation changes. The clay loam soil more effectively buffered water stress during relatively long intervals between precipitation events, particularly after a large rainfall event. Subsequent soil N aqueous and gaseous losses showed either increases or decreases in response to increasing precipitation variability due to complex soil moisture dynamics. For a high rainfall scenario, high precipitation variability resulted in as high as 2.4-, 2.4-, 1.2-, and 13-fold increases in NH{sub 3}, NO, N{sub 2}O and NO{sub 3}{sup -} fluxes, respectively, in clay loam soil. In sandy loam soil, however, NO and N{sub 2}O fluxes decreased by 15% and 28%, respectively, in response to high precipitation variability. Our results demonstrate that soil N cycling responses to increasing precipitation variability depends on precipitation amount and soil texture, and that accurate prediction of future N cycling and gas effluxes requires models with relatively sophisticated representation of the relevant processes.« less

Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

NASA Astrophysics Data System (ADS)

Stief, P.

2013-12-01

Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal-microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal-microbe interactions in the benthos of aquatic ecosystems: (i) ecosystem engineering, (ii) grazing, and (iii) symbiosis. Their specific contributions to the turnover of fixed nitrogen (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of ammonium from sediments is enhanced more strongly than the sedimentary uptake of nitrate. Ecosystem engineering by reef-building macrofauna increases nitrogen retention and ammonium concentrations in shallow aquatic ecosystems, but allows organic nitrogen removal through harvesting. Grazing by macrofauna on benthic microbes apparently has small or neutral effects on nitrogen cycling. Animal-microbe symbioses provide abundant and distinct benthic compartments for a multitude of nitrogen-cycle pathways. Recent studies reveal that ecosystem engineering, grazing, and symbioses of benthic macrofauna significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and transport of nitrogen.

Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

NASA Astrophysics Data System (ADS)

Stief, P.

2013-07-01

Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal-microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal-microbe interactions in the benthos of aquatic ecosystems: (i) ecosystem engineering, (ii) grazing, and (iii) symbiosis. Their specific contributions to the turnover of fixed nitrogen (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of ammonium from sediments often is enhanced even more than the sedimentary uptake of nitrate. Ecosystem engineering by reef-building macrofauna increases nitrogen retention and ammonium concentrations in shallow aquatic ecosystems, but allows organic nitrogen removal through harvesting. Grazing by macrofauna on benthic microbes apparently has small or neutral effects on nitrogen cycling. Animal-microbe symbioses provide abundant and distinct benthic compartments for a multitude of nitrogen-cycle pathways. Recent studies revealed that ecosystem engineering, grazing, and symbioses of benthic macrofauna significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and transport of nitrogen.

Simulating coupled carbon and nitrogen dynamics following mountain pine beetle outbreaks in the western United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Edburg, Steven L.; Hicke, Jeffrey A.; Lawrence, David M.

2011-01-01

Insect outbreaks are major ecosystem disturbances, affecting a similar area as forest fires annually across North America. Tree mortality caused by epidemics of bark beetles alters carbon cycling in the first several years following the disturbance by reducing stand-level primary production and increasing decomposition rates. The few studies of biogeochemical cycling following outbreaks have shown a range of impacts from small responses of net carbon fluxes in the first several years after a severe outbreak to large forest areas that are sources of carbon to the atmosphere for decades. To gain more understanding about causes of this range of responses,more » we used an ecosystem model to assess impacts of different bark beetle outbreak conditions on coupled carbon and nitrogen cycling. We modified the Community Land Model with prognostic carbon and nitrogen to include prescribed bark beetle outbreaks. We then compared control simulations (without a bark beetle outbreak) to simulations with various mortality severity, durations of outbreak, and snagfall dynamics to quantify the range of carbon flux responses and recovery rates of net ecosystem exchange to a range of realistic outbreak conditions. Prescribed mortality by beetles reduced leaf area and thus productivity. Gross primary productivity decreased by as much as 80% for a severe outbreak (95% mortality) and by 10% for less severe outbreaks (25% mortality). Soil mineral nitrogen dynamics (immobilization and plant uptake) were important in governing post-outbreak productivity, and were strongly modulated by carbon inputs to the soil from killed trees. Initial increases in heterotrophic respiration caused by a pulse of labile carbon from roots were followed by a slight reduction (from pre-snagfall reduced inputs), then a secondary increase (from inputs due to snagfall). Secondary increases in heterotrophic respiration were largest for simulated windthrow of snags after a prescribed snagfall delay period. Net ecosystem productivity recovered within 40 years for all simulations, with the largest increases in the first 10 years. Our simulations illustrate that, given the large variability in bark beetle outbreak conditions, a wide range of responses in carbon and nitrogen dynamics can occur. The fraction of trees killed, timing of snagfall, snagfall rate, and management decisions as to whether or not to remove snags for harvesting or for fire prevention will have a major impact on post-outbreak carbon fluxes up to 100 years following an outbreak.« less

Topography and vegetation alter soil nitrogen availability and loss in tropical and temperate ecosystems

NASA Astrophysics Data System (ADS)

Weintraub, S. R.

2016-12-01

A dominant paradigm in ecosystem ecology holds that nitrogen (N) cycles as an excess nutrient in old tropical landscapes but is a scarce, limiting resource in young, temperate ecosystems. However, recent work suggests that both biotic and abiotic state factors can promote unexpected patterns of N cycling across complex landscapes. Here, I present two case studies demonstrating how topography and vegetation shape patterns of N cycling and loss in heterogeneous terrain. In a geomorphically dynamic, high-diversity tropical rainforest, flat ridge tops display open N cycling, yet eroding hillslopes are surprisingly N-poor with multiple indicators implying conservative N cycling. Soil mineralogy indicates slope soils are less developed than adjacent flat ridge counterparts, and the accumulation of cosmogenic 10Be in surface soil suggests residence times are only half as long. Together, these observations suggest erosion resets soil development, with constant N-removal promoting tight N-cycling. Further, soil δ15N is negatively correlated with slope angle across the landscape, and mass balance modeling supports an increasing role for erosive N loss in steep regions. In a temperate montane landscape with lower physical erosion rates, vegetation interacts with hydro-topographic position to mediate local N dynamics. Upslope, forests display conservative N-cycling, yet in adjacent herbaceous areas, multiple indicators point toward an open N cycle. Downslope, both vegetation types show an increase in N-richness. In downslope forests, this is confined to the near-surface, stemming from higher foliar N content due to lateral N transport and uptake. In herbaceous sites, deeper vadose-zone N transport occurs but with no change in foliar N, implying differences in the degree of N limitation between vegetation types. In this landscape, soil nitrate leaching rates track N availability, though δ15N-NO3- does not suggest a similar pattern for gaseous losses, instead reflecting nitrification and/or transport dynamics. Pervasive human alteration of the N cycle underscores the need to unravel these state-factor controls on N availability and loss in order to predict and model ecosystem biogeochemical dynamics in the face of global change.

Nutrient Dynamics In Flooded Wetlands. I: Model Development

EPA Science Inventory

Wetlands are rich ecosystems recognized for ameliorating floods, improving water quality and providing other ecosystem benefits. In this part of a two-paper sequel, we present a relatively detailed process-based model for nitrogen and phosphorus retention, cycling and removal in...

The importance of amino sugar turnover to C and N cycling in organic horizons of old-growth Douglas-fir forest soils colonized by ectomycorrhizal mats

Treesearch

L. Zeglin; L.A. Kluber; D.D. Myrold

2012-01-01

Amino sugar dynamics represent an important but under-investigated component of the carbon (C) and nitrogen (N) cycles in old-growth Douglas-fir forest soils. Because fungal biomass is high in these soils, particularly in areas colonized by rhizomorphic ectomycorrhizal fungal mats, organic matter derived from chitinous cell wall material (or the monomeric building...

Long-term nitrogen dynamics of Coweeta forested watersheds in the southeastern United States of America

Treesearch

Wayne T. Swank; James M. Vose

2001-01-01

We analyzed long-term (23 years) data of inorganic N deposition and loss for an extensive network of mature mixed hardwood covered watersheds in the southern Appalachians of North Carolina to assess trends and dynamics of N in baseline ecosystems. We also assessed watershed N saturation in the context of altered N cycles and stream inorganic N responses associated with...

Carbon and nitrogen dynamics across a bedrock-regulated subarctic pH gradient

NASA Astrophysics Data System (ADS)

Tomczyk, N.; Heim, E. W.; Sadowsky, J.; Remiszewski, K.; Varner, R. K.; Bryce, J. G.; Frey, S. D.

2014-12-01

Bedrock geochemistry has been shown to influence landscape evolution due to nutrient limitation on primary production. There may also be less direct interactions between bedrock-derived chemicals and ecosystem function. Effects of calcium (Ca) and pH on soil carbon (C) and nitrogen (N) cycling have been shown in acid impacted forests o f North America. Understanding intrinsic factors that affect C and nutrient dynamics in subarctic ecosystems has implications for how these ecosystems will respond to a changing climate. How the soil microbial community allocates enzymes to acquire resources from the environment can indicate whether a system is nutrient or energy limited. This study examined whether bedrock geochemistry exerts pressure on nutrient cycles in the overlying soils. In thin, weakly developed soils, bedrock is the primary mineral material and is a source of vital nutrients. Nitrogen (N) and C are not derived from bedrock, but their cycling is still affected by reactions with geologically-derived chemicals. Our study sites near Abisko, Sweden (~68°N) were selected adjacent to five distinct bedrock outcrops (quartzite, slate, carbonate, and two different metasedimenty units). All sites were at a similar elevation (~700 m a.s.l.) and had similar vegetation (subarctic heath). Nutrient concentrations in bedrock and soils were measured in addition to soil microbial biomass and extracellular enzyme activity. We found a statistically significant correlation between soil Ca concentrations and soil pH (r = 0.88, p < 0.01). There were also significant relationships between soil pH and the ratio of C-acquiring to N-acquiring enzyme activity (r = -0.89, p < 0.01), soil pH and soil C-to-N ratio (r = -0.76, p < 0.01), and the ratio of C-acquiring to N-acquiring enzyme activity and soil C-to-N ratio (r = 0.78, p < 0.01). These results suggest that soil Ca concentrations influence C and N cycling dynamics in these soils through their effect on soil pH.

Threshold Level of Harvested Litter Input for Carbon Sequestration by Bioenergy Crops

NASA Astrophysics Data System (ADS)

Woo, D.; Quijano, J.; Kumar, P.; Chaoka, S.

2013-12-01

Due to the increase in the demands for bioenergy, considerable areas in the Midwestern United States could be converted into croplands for second generation bioenergy, such as the cultivation of miscanthus and switchgrass. Study on the effect of the expansion of these crops on soil carbon and nitrogen dynamics is integral to understanding their long-term environmental impacts. In this study, we focus on a comparative study between miscanthus, swichgrass, and corn-corn-soybean rotation on the below-ground dynamics of carbon and nitrogen. Fate of soil carbon and nitrogen is sensitive to harvest litter treatments and residue quality. Therefore, we attempt to address how different amounts of harvested biomass inputs into the soil impact the evolution of organic carbon and inorganic nitrogen in the subsurface. We use Precision Agricultural Landscape Modeling System, version 5.4.0, to capture biophysical and hydrological components coupled with a multilayer carbon and nitrogen cycle model. We apply the model at daily time scale to the Energy Biosciences Institute study site, located in the University of Illinois Research Farms, in Urbana, Illinois. The atmospheric forcing used to run the model was generated stochastically from parameters obtained from 10 years of atmospheric data recorded at both the study site and Willard Airport. Comparisons of model results against observations of drainage, ammonium and nitrate loads in tile drainage, nitrogen mineralization, nitrification, and litterfall in 2011 reveal the ability of the model to accurately capture the ecohydrology, as well as the carbon and nitrogen dynamics at the study site. The results obtained here highlight that there is a critical return of biomass to the soil when harvested for miscanthus (15% of aboveground biomass), and switchgrass (25%) after which the accumulation of carbon in the soil is significantly enhanced and nitrogen leaching is reduced, unlike corn-corn-soybean rotation. The main factor influencing the accumulation of carbon and reduction of nitrogen is the high carbon to nitrogen ratio in the biomass that is contributed as a litter from miscanthus and switchgrass when harvested. A nitrogen deficient environment in the top soil hinders microbial growth and therefore decomposition. In addition, lack of nitrogen fertilizer for miscanthus enhances even more the accumulation of carbon in the soil. On the other hand, nitrogen uptakes by miscanthus and switchgrass are not considerably affected due to a nitrogen fixation ability for miscanthus and fertilizer application for switchgrass. The simulation results obtained in this study show differences in the soil biogeochemistry induced by the different crops analyzed. We believe these results provide important findings about the impact of bioenergy crops on the carbon and nitrogen cycling in the soil.

Social dynamics within decomposer communities lead to nitrogen retention and organic matter build-up in soils

PubMed Central

Kaiser, Christina; Franklin, Oskar; Richter, Andreas; Dieckmann, Ulf

2015-01-01

The chemical structure of organic matter has been shown to be only marginally important for its decomposability by microorganisms. The question of why organic matter does accumulate in the face of powerful microbial degraders is thus key for understanding terrestrial carbon and nitrogen cycling. Here we demonstrate, based on an individual-based microbial community model, that social dynamics among microbes producing extracellular enzymes (‘decomposers') and microbes exploiting the catalytic activities of others (‘cheaters') regulate organic matter turnover. We show that the presence of cheaters increases nitrogen retention and organic matter build-up by downregulating the ratio of extracellular enzymes to total microbial biomass, allowing nitrogen-rich microbial necromass to accumulate. Moreover, increasing catalytic efficiencies of enzymes are outbalanced by a strong negative feedback on enzyme producers, leading to less enzymes being produced at the community level. Our results thus reveal a possible control mechanism that may buffer soil CO2 emissions in a future climate. PMID:26621582

Structure theorems and the dynamics of nitrogen catabolite repression in yeast

PubMed Central

Boczko, Erik M.; Cooper, Terrance G.; Gedeon, Tomas; Mischaikow, Konstantin; Murdock, Deborah G.; Pratap, Siddharth; Wells, K. Sam

2005-01-01

By using current biological understanding, a conceptually simple, but mathematically complex, model is proposed for the dynamics of the gene circuit responsible for regulating nitrogen catabolite repression (NCR) in yeast. A variety of mathematical “structure” theorems are described that allow one to determine the asymptotic dynamics of complicated systems under very weak hypotheses. It is shown that these theorems apply to several subcircuits of the full NCR circuit, most importantly to the URE2–GLN3 subcircuit that is independent of the other constituents but governs the switching behavior of the full NCR circuit under changes in nitrogen source. Under hypotheses that are fully consistent with biological data, it is proven that the dynamics of this subcircuit is simple periodic behavior in synchrony with the cell cycle. Although the current mathematical structure theorems do not apply to the full NCR circuit, extensive simulations suggest that the dynamics is constrained in much the same way as that of the URE2–GLN3 subcircuit. This finding leads to the proposal that mathematicians study genetic circuits to find new geometries for which structure theorems may exist. PMID:15814615

Nitrogen and Phosphorus Plant Uptake During Periods with no Photosynthesis Accounts for About Half of Global Annual Uptake

NASA Astrophysics Data System (ADS)

Riley, W. J.; Zhu, Q.; Tang, J.

2017-12-01

Uncertainties in current Earth System Model (ESM) predictions of terrestrial carbon-climate feedbacks over the 21st century are as large as, or larger than, any other reported natural system uncertainties. Soil Organic Matter (SOM) decomposition and photosynthesis, the dominant fluxes in this regard, are tightly linked through nutrient availability, and the recent Coupled Model Inter-comparison Project 5 (CMIP5) used for climate change assessment had no credible representations of these constraints. In response, many ESM land models (ESMLMs) have developed dynamic and coupled soil and plant nutrient cycles. Here we quantify terrestrial carbon cycle impacts from well-known observed plant nutrient uptake mechanisms ignored in most current ESMLMs. In particular, we estimate the global role of plant root nutrient competition with microbes and abiotic process at night and during the non-growing season using the ACME land model (ALMv1-ECA-CNP) that explicitly represents these dynamics. We first demonstrate that short-term nutrient uptake dynamics and competition between plants and microbes are accurately predicted by the model compared to 15N and 33P isotopic tracer measurements from more than 20 sites. We then show that global nighttime and non-growing season nitrogen and phosphorus uptake accounts for 46 and 45%, respectively, of annual uptake, with large latitudinal variation. Model experiments show that ignoring these plant uptake periods leads to large positive biases in annual N leaching (globally 58%) and N2O emissions (globally 68%). Biases these large will affect modeled carbon cycle dynamics over time, and lead to predictions of ecosystems that have overly open nutrient cycles and therefore lower capacity to sequester carbon.

Organization of biogeochemical nitrogen pathways with switch-like adjustment in fluctuating soil redox conditions

PubMed Central

Lamba, Sanjay; Bera, Soumen; Rashid, Mubasher; Medvinsky, Alexander B.; Acquisti, Claudia; Li, Bai-Lian

2017-01-01

Nitrogen is cycled throughout ecosystems by a suite of biogeochemical processes. The high complexity of the nitrogen cycle resides in an intricate interplay between reversible biochemical pathways alternatively and specifically activated in response to diverse environmental cues. Despite aggressive research, how the fundamental nitrogen biochemical processes are assembled and maintained in fluctuating soil redox conditions remains elusive. Here, we address this question using a kinetic modelling approach coupled with dynamical systems theory and microbial genomics. We show that alternative biochemical pathways play a key role in keeping nitrogen conversion and conservation properties invariant in fluctuating environments. Our results indicate that the biochemical network holds inherent adaptive capacity to stabilize ammonium and nitrate availability, and that the bistability in the formation of ammonium is linked to the transient upregulation of the amo-hao mediated nitrification pathway. The bistability is maintained by a pair of complementary subsystems acting as either source or sink type systems in response to soil redox fluctuations. It is further shown how elevated anthropogenic pressure has the potential to break down the stability of the system, altering substantially ammonium and nitrate availability in the soil, with dramatic effects on biodiversity. PMID:28280580

Temporal changes in the diazotrophic bacterial communities associated with Caribbean sponges Ircinia stroblina and Mycale laxissima

PubMed Central

Zhang, Fan; Vicente, Jan; Hill, Russell T.

2014-01-01

Sponges that harbor microalgal or, cyanobacterial symbionts may benefit from photosynthetically derived carbohydrates, which are rich in carbon but devoid of nitrogen, and may therefore encounter nitrogen limitation. Diazotrophic communities associated with two Caribbean sponges, Ircinia strobilina and Mycale laxissima were studied in a time series during which three individuals of each sponge were collected in four time points (5:00 AM, 12:00 noon, 5:00 PM, 10:00 PM). nifH genes were successfully amplified from the corresponding gDNA and cDNA pools and sequenced by high throughput 454 amplicon sequencing. In both sponges, over half the nifH transcripts were classified as from cyanobacteria and the remainder from heterotrophic bacteria. We found various groups of bacteria actively expressing the nifH gene during the entire day-night cycle, an indication that the nitrogen fixation potential was fully exploited by different nitrogen fixing bacteria groups associated with their hosts. This study showed for the first time the dynamic changes in the activity of the diazotrophic bacterial communities in marine sponges. Our study expands understanding of the diazotrophic groups that contribute to the fixed nitrogen pool in the benthic community. Sponge bacterial community-associated diazotrophy may have an important impact on the nitrogen biogeochemical cycle in the coral reef ecosystem. PMID:25389420

Temporal changes in the diazotrophic bacterial communities associated with Caribbean sponges Ircinia stroblina and Mycale laxissima.

PubMed

Zhang, Fan; Vicente, Jan; Hill, Russell T

2014-01-01

Sponges that harbor microalgal or, cyanobacterial symbionts may benefit from photosynthetically derived carbohydrates, which are rich in carbon but devoid of nitrogen, and may therefore encounter nitrogen limitation. Diazotrophic communities associated with two Caribbean sponges, Ircinia strobilina and Mycale laxissima were studied in a time series during which three individuals of each sponge were collected in four time points (5:00 AM, 12:00 noon, 5:00 PM, 10:00 PM). nifH genes were successfully amplified from the corresponding gDNA and cDNA pools and sequenced by high throughput 454 amplicon sequencing. In both sponges, over half the nifH transcripts were classified as from cyanobacteria and the remainder from heterotrophic bacteria. We found various groups of bacteria actively expressing the nifH gene during the entire day-night cycle, an indication that the nitrogen fixation potential was fully exploited by different nitrogen fixing bacteria groups associated with their hosts. This study showed for the first time the dynamic changes in the activity of the diazotrophic bacterial communities in marine sponges. Our study expands understanding of the diazotrophic groups that contribute to the fixed nitrogen pool in the benthic community. Sponge bacterial community-associated diazotrophy may have an important impact on the nitrogen biogeochemical cycle in the coral reef ecosystem.

Relations between phytoplankton growth rates and nutrient dynamics in Lake Norman, North Carolina. Technical report series

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rodriguez, M.S.

A baseline study of phytoplankton production and nutrient dynamics was conducted on Lake Norman, NC, a 13000-ha, warm-monomictic reservoir, prior to the initiation of thermal inputs from an 1180-MW nuclear electric generation facility. The objective of the study was to identify the major physical, chemical and biological processes controlling nutrient dynamics in Lake Norman, with specific reference to the impact of phytoplankton production on the cycling of carbon, nitrogen and phosphorus.

Emergence of nutrient limitation in tropical dry forests: hypotheses from simulation models

NASA Astrophysics Data System (ADS)

Medvigy, D.; Waring, B. G.; Xu, X.; Trierweiler, A.; Werden, L. K.; Wang, G.; Zhu, Q.; Powers, J. S.

2017-12-01

It is unclear to what extent tropical dry forest productivity may be limited by nutrients. Direct assessment of nutrient limitation through fertilization experiments has been rare, and paradigms pertaining to other ecosystems may not extend to tropical dry forests. For example, because dry tropical forests have a lower water supply than moist tropical forests, dry forests can have lower decomposition rates, higher soil carbon and nitrogen concentrations, and a more open nitrogen cycle than moist forests. We used a mechanistic, numerical model to generate hypotheses about nutrient limitation in tropical dry forests. The model dynamically couples ED2 (vegetation dynamics), MEND (biogeochemistry), and N-COM (plant-microbe competition for nutrients). Here, the MEND-component of the model has been extended to include nitrogen (N) and phosphorus (P) cycles. We focus on simulation of sixteen 25m x 25m plots in Costa Rica where a fertilization experiment has been underway since 2015. Baseline simulations are characterized by both nitrogen and phosphorus limitation of vegetation. Fertilization with N and P increased vegetation biomass, with N fertilization having a somewhat stronger effect. Nutrient limitation was also sensitive to climate and was more pronounced during drought periods. Overflow respiration was identified as a key process that mitigated nutrient limitation. These results suggest that, despite often having richer soils than tropical moist forests, tropical dry forests can also become nutrient-limited. If the climate becomes drier in the next century, as is expected for Central America, drier soils may decrease microbial activity and exacerbate nutrient limitation. The importance of overflow respiration underscores the need for appropriate treatment of microbial dynamics in ecosystem models. Ongoing and new nutrient fertilization experiments will present opportunities for testing whether, and how, nutrient limitation may indeed be emerging in tropical dry forests.

Enzymology under global change: organic nitrogen turnover in alpine and sub-Arctic soils.

PubMed

Weedon, James T; Aerts, Rien; Kowalchuk, George A; van Bodegom, Peter M

2011-01-01

Understanding global change impacts on the globally important carbon storage in alpine, Arctic and sub-Arctic soils requires knowledge of the mechanisms underlying the balance between plant primary productivity and decomposition. Given that nitrogen availability limits both processes, understanding the response of the soil nitrogen cycle to shifts in temperature and other global change factors is crucial for predicting the fate of cold biome carbon stores. Measurements of soil enzyme activities at different positions of the nitrogen cycling network are an important tool for this purpose. We review a selection of studies that provide data on potential enzyme activities across natural, seasonal and experimental gradients in cold biomes. Responses of enzyme activities to increased nitrogen availability and temperature are diverse and seasonal dynamics are often larger than differences due to experimental treatments, suggesting that enzyme expression is regulated by a combination of interacting factors reflecting both nutrient supply and demand. The extrapolation from potential enzyme activities to prediction of elemental nitrogen fluxes under field conditions remains challenging. Progress in molecular '-omics' approaches may eventually facilitate deeper understanding of the links between soil microbial community structure and biogeochemical fluxes. In the meantime, accounting for effects of the soil spatial structure and in situ variations in pH and temperature, better mapping of the network of enzymatic processes and the identification of rate-limiting steps under different conditions should advance our ability to predict nitrogen fluxes.

Toward a mechanistic modeling of nitrogen limitation on vegetation dynamics.

PubMed

Xu, Chonggang; Fisher, Rosie; Wullschleger, Stan D; Wilson, Cathy J; Cai, Michael; McDowell, Nate G

2012-01-01

Nitrogen is a dominant regulator of vegetation dynamics, net primary production, and terrestrial carbon cycles; however, most ecosystem models use a rather simplistic relationship between leaf nitrogen content and photosynthetic capacity. Such an approach does not consider how patterns of nitrogen allocation may change with differences in light intensity, growing-season temperature and CO(2) concentration. To account for this known variability in nitrogen-photosynthesis relationships, we develop a mechanistic nitrogen allocation model based on a trade-off of nitrogen allocated between growth and storage, and an optimization of nitrogen allocated among light capture, electron transport, carboxylation, and respiration. The developed model is able to predict the acclimation of photosynthetic capacity to changes in CO(2) concentration, temperature, and radiation when evaluated against published data of V(c,max) (maximum carboxylation rate) and J(max) (maximum electron transport rate). A sensitivity analysis of the model for herbaceous plants, deciduous and evergreen trees implies that elevated CO(2) concentrations lead to lower allocation of nitrogen to carboxylation but higher allocation to storage. Higher growing-season temperatures cause lower allocation of nitrogen to carboxylation, due to higher nitrogen requirements for light capture pigments and for storage. Lower levels of radiation have a much stronger effect on allocation of nitrogen to carboxylation for herbaceous plants than for trees, resulting from higher nitrogen requirements for light capture for herbaceous plants. As far as we know, this is the first model of complete nitrogen allocation that simultaneously considers nitrogen allocation to light capture, electron transport, carboxylation, respiration and storage, and the responses of each to altered environmental conditions. We expect this model could potentially improve our confidence in simulations of carbon-nitrogen interactions and the vegetation feedbacks to climate in Earth system models.

Toward a Mechanistic Modeling of Nitrogen Limitation on Vegetation Dynamics

PubMed Central

Xu, Chonggang; Fisher, Rosie; Wullschleger, Stan D.; Wilson, Cathy J.; Cai, Michael; McDowell, Nate G.

2012-01-01

Nitrogen is a dominant regulator of vegetation dynamics, net primary production, and terrestrial carbon cycles; however, most ecosystem models use a rather simplistic relationship between leaf nitrogen content and photosynthetic capacity. Such an approach does not consider how patterns of nitrogen allocation may change with differences in light intensity, growing-season temperature and CO2 concentration. To account for this known variability in nitrogen-photosynthesis relationships, we develop a mechanistic nitrogen allocation model based on a trade-off of nitrogen allocated between growth and storage, and an optimization of nitrogen allocated among light capture, electron transport, carboxylation, and respiration. The developed model is able to predict the acclimation of photosynthetic capacity to changes in CO2 concentration, temperature, and radiation when evaluated against published data of Vc,max (maximum carboxylation rate) and Jmax (maximum electron transport rate). A sensitivity analysis of the model for herbaceous plants, deciduous and evergreen trees implies that elevated CO2 concentrations lead to lower allocation of nitrogen to carboxylation but higher allocation to storage. Higher growing-season temperatures cause lower allocation of nitrogen to carboxylation, due to higher nitrogen requirements for light capture pigments and for storage. Lower levels of radiation have a much stronger effect on allocation of nitrogen to carboxylation for herbaceous plants than for trees, resulting from higher nitrogen requirements for light capture for herbaceous plants. As far as we know, this is the first model of complete nitrogen allocation that simultaneously considers nitrogen allocation to light capture, electron transport, carboxylation, respiration and storage, and the responses of each to altered environmental conditions. We expect this model could potentially improve our confidence in simulations of carbon-nitrogen interactions and the vegetation feedbacks to climate in Earth system models. PMID:22649564

Modelling the pelagic nitrogen cycle and vertical particle flux in the Norwegian sea

NASA Astrophysics Data System (ADS)

Haupt, Olaf J.; Wolf, Uli; v. Bodungen, Bodo

1999-02-01

A 1D Eulerian ecosystem model (BIological Ocean Model) for the Norwegian Sea was developed to investigate the dynamics of pelagic ecosystems. The BIOM combines six biochemical compartments and simulates the annual nitrogen cycle with specific focus on production, modification and sedimentation of particles in the water column. The external forcing and physical framework is based on a simulated annual cycle of global radiation and an annual mixed-layer cycle derived from field data. The vertical resolution of the model is given by an exponential grid with 200 depth layers, allowing specific parameterization of various sinking velocities, breakdown of particles and the remineralization processes. The aim of the numerical experiments is the simulation of ecosystem dynamics considering the specific biogeochemical properties of the Norwegian Sea, for example the life cycle of the dominant copepod Calanus finmarchicus. The results of the simulations were validated with field data. Model results are in good agreement with field data for the lower trophic levels of the food web. With increasing complexity of the organisms the differences increase between simulated processes and field data. Results of the numerical simulations suggest that BIOM is well adapted to investigate a physically controlled ecosystem. The simulation of grazing controlled pelagic ecosystems, like the Norwegian Sea, requires adaptations of parameterization to the specific ecosystem features. By using seasonally adaptation of the most sensible processes like utilization of light by phytoplankton and grazing by zooplankton results were greatly improved.

Understanding spatial heterogeneity in soil carbon and nitrogen cycling in regenerating tropical dry forests

NASA Astrophysics Data System (ADS)

Waring, B. G.; Powers, J. S.; Branco, S.; Adams, R.; Schilling, E.

2015-12-01

Tropical dry forests (TDFs) currently store significant amounts of carbon in their biomass and soils, but these highly seasonal ecosystems may be uniquely sensitive to altered climates. The ability to quantitatively predict C cycling in TDFs under global change is constrained by tremendous spatial heterogeneity in soil parent material, land-use history, and plant community composition. To explore this variation, we examined soil carbon and nitrogen dynamics in 18 permanent plots spanning orthogonal gradients of stand age and soil fertility. Soil C and N pools, microbial biomass, and microbial extracellular enzyme activities were most variable at small (m2) spatial scales. However, the ratio of organic vs. inorganic N cycling was consistently higher in forest stands dominated by slow-growing, evergreen trees that associate with ectomycorrhizal fungi. Similarly, although bulk litter stocks and turnover rates varied greatly among plots, litter decomposition tended to be slower in ectomycorrhizae-dominated stands. Soil N cycling tended to be more conservative in older plots, although the relationship between stand age and element cycling was weak. Our results emphasize that microscale processes, particularly interactions between mycorrhizal fungi and free-living decomposers, are important controls on ecosystem-scale element cycling.

A mechanistic soil biogeochemistry model with explicit representation of microbial and macrofaunal activities and nutrient cycles

NASA Astrophysics Data System (ADS)

Fatichi, Simone; Manzoni, Stefano; Or, Dani; Paschalis, Athanasios

2016-04-01

The potential of a given ecosystem to store and release carbon is inherently linked to soil biogeochemical processes. These processes are deeply connected to the water, energy, and vegetation dynamics above and belowground. Recently, it has been advocated that a mechanistic representation of soil biogeochemistry require: (i) partitioning of soil organic carbon (SOC) pools according to their functional role; (ii) an explicit representation of microbial dynamics; (iii) coupling of carbon and nutrient cycles. While some of these components have been introduced in specialized models, they have been rarely implemented in terrestrial biosphere models and tested in real cases. In this study, we combine a new soil biogeochemistry model with an existing model of land-surface hydrology and vegetation dynamics (T&C). Specifically the soil biogeochemistry component explicitly separates different litter pools and distinguishes SOC in particulate, dissolved and mineral associated fractions. Extracellular enzymes and microbial pools are explicitly represented differentiating the functional roles of bacteria, saprotrophic and mycorrhizal fungi. Microbial activity depends on temperature, soil moisture and litter or SOC stoichiometry. The activity of macrofauna is also modeled. Nutrient dynamics include the cycles of nitrogen, phosphorous and potassium. The model accounts for feedbacks between nutrient limitations and plant growth as well as for plant stoichiometric flexibility. In turn, litter input is a function of the simulated vegetation dynamics. Root exudation and export to mycorrhiza are computed based on a nutrient uptake cost function. The combined model is tested to reproduce respiration dynamics and nitrogen cycle in few sites where data were available to test plausibility of results across a range of different metrics. For instance in a Swiss grassland ecosystem, fine root, bacteria, fungal and macrofaunal respiration account for 40%, 23%, 33% and 4% of total belowground respiration, respectively. Root exudation and carbon export to mycorrhizal represent about 7% of plant Net Primary Production. The model allows exploring the temporal dynamics of respiration fluxes from the different ecosystem components and designing virtual experiments on the controls exerted by environmental variables and/or soil microbes and mycorrhizal associations on soil carbon storage, plant growth, and nutrient leaching.

Lipids as paleomarkers to constrain the marine nitrogen cycle

PubMed Central

Rush, Darci

2017-01-01

Summary Global climate is, in part, regulated by the effect of microbial processes on biogeochemical cycling. The nitrogen cycle, in particular, is driven by microorganisms responsible for the fixation and loss of nitrogen, and the reduction‐oxidation transformations of bio‐available nitrogen. Within marine systems, nitrogen availability is often the limiting factor in the growth of autotrophic organisms, intrinsically linking the nitrogen and carbon cycles. In order to elucidate the state of these cycles in the past, and help envisage present and future variability, it is essential to understand the specific microbial processes responsible for transforming bio‐available nitrogen species. As most microorganisms are soft‐bodied and seldom leave behind physical fossils in the sedimentary record, recalcitrant lipid biomarkers are used to unravel microbial processes in the geological past. This review emphasises the recent advances in marine nitrogen cycle lipid biomarkers, underlines the missing links still needed to fully elucidate past shifts in this biogeochemically‐important cycle, and provides examples of biomarker applications in the geological past. PMID:28142226

Shifts in lake N: P stoichiometry and nutrient limitation driven by atmospheric nitrogen deposition

USGS Publications Warehouse

Elser, J.J.; Andersen, T.; Baron, Jill S.; Bergstrom, A.-K.; Jansson, M.; Kyle, M.; Nydick, K.R.; Steger, L.; Hessen, D.O.

2009-01-01

Human activities have more than doubled the amount of nitrogen (N) circulating in the biosphere. One major pathway of this anthropogenic N input into ecosystems has been increased regional deposition from the atmosphere. Here we show that atmospheric N deposition increased the stoichiometric ratio of N and phosphorus (P) in lakes in Norway, Sweden, and Colorado, United States, and, as a result, patterns of ecological nutrient limitation were shifted. Under low N deposition, phytoplankton growth is generally N-limited; however, in high-N deposition lakes, phytoplankton growth is consistently P-limited. Continued anthropogenic amplification of the global N cycle will further alter ecological processes, such as biogeochemical cycling, trophic dynamics, and biological diversity, in the world's lakes, even in lakes far from direct human disturbance.

Successional dynamics drive tropical forest nutrient limitation

NASA Astrophysics Data System (ADS)

Chou, C.; Hedin, L. O. O.

2017-12-01

It is increasingly recognized that nutrients such as N and P may significantly constrain the land carbon sink. However, we currently lack a complete understanding of these nutrient cycles in forest ecosystems and how to incorporate them into Earth System Models. We have developed a framework of dynamic forest nutrient limitation, focusing on the role of secondary forest succession and canopy gap disturbances as bottlenecks of high plant nutrient demand and limitation. We used succession biomass data to parameterize a simple ecosystem model and examined the dynamics of nutrient limitation throughout tropical secondary forest succession. Due to the patterns of biomass recovery in secondary tropical forests, we found high nutrient demand from rapid biomass accumulation in the earliest years of succession. Depending on previous land use scenarios, soil nutrient availability may also be low in this time period. Coupled together, this is evidence that there may be high biomass nutrient limitation early in succession, which is partially met by abundant symbiotic nitrogen fixation from certain tree species. We predict a switch from nitrogen limitation in early succession to one of three conditions: (i) phosphorus only, (ii) phosphorus plus nitrogen, or (iii) phosphorus, nitrogen, plus light co-limitation. We will discuss the mechanisms that govern the exact trajectory of limitation as forests build biomass. In addition, we used our model to explore scenarios of tropical secondary forest impermanence and the impacts of these dynamics on ecosystem nutrient limitation. We found that secondary forest impermanence exacerbates nutrient limitation and the need for nitrogen fixation early in succession. Together, these results indicate that biomass recovery dynamics early in succession as well as their connection to nutrient demand and limitation are fundamental for understanding and modeling nutrient limitation of the tropical forest carbon sink.

Accounting for the biogeochemical cycle of nitrogen in input-output life cycle assessment.

PubMed

Singh, Shweta; Bakshi, Bhavik R

2013-08-20

Nitrogen is indispensable for sustaining human activities through its role in the production of food, animal feed, and synthetic chemicals. This has encouraged significant anthropogenic mobilization of reactive nitrogen and its emissions into the environment resulting in severe disruption of the nitrogen cycle. This paper incorporates the biogeochemical cycle of nitrogen into the 2002 input-output model of the U.S. economy. Due to the complexity of this cycle, this work proposes a unique classification of nitrogen flows to facilitate understanding of the interaction between economic activities and various flows in the nitrogen cycle. The classification scheme distinguishes between the mobilization of inert nitrogen into its reactive form, use of nitrogen in various products, and nitrogen losses to the environment. The resulting inventory and model of the US economy can help quantify the direct and indirect impacts or dependence of economic sectors on the nitrogen cycle. This paper emphasizes the need for methods to manage the N cycle that focus not just on N losses, which has been the norm until now, but also include other N flows for a more comprehensive view and balanced decisions. Insight into the N profile of various sectors of the 2002 U.S. economy is presented, and the inventory can also be used for LCA or Hybrid LCA of various products. The resulting model is incorporated in the approach of Ecologically-Based LCA and available online.

Climatic implications of Nitrogen constraints on terrestrial C sequestration estimates in CMIP5 model projection

NASA Astrophysics Data System (ADS)

Zaehle, S.; Jones, C.; Robertson, E.; Lamarque, J.; Houlton, B. Z.

2012-12-01

Nitrogen is an essential nutrient for living organisms and a key mediator of carbon cycle processes. An increasing number of global terrestrial ecosystem models has been recently developed. These models show that nitrogen dynamics strongly affect terrestrial carbon budget projections for the 21st century as they tend to significantly reduce the carbon sequestration capacity of the terrestrial biosphere in response to CO2 fertilization and to modify the climate sensitivity of the global carbon cycle. However, only one of these models (included into two Earth system models) has been used in the CMIP5 study. Therefore the effect of C:N interactions on the CMIP5 projections can only be estimated indirectly. Here, we analyze results of 13 Earth system models from four RCP scenarios (RCP 2.6, 4.5, 6.0, 8.5) with respect to the implied nitrogen requirement to afford the simulated terrestrial carbon sequestration. We compare this N demand to scenarios of changes in terrestrial N availability due to natural variability in the N cycle, as well as changes in biological nitrogen fixation, nitrogen deposition, and ecosystem stoichiometry. Unlike previous studies of a similar type, we base our analyses on a grid-cell basis and explicitly track changes in the carbon and nitrogen cycles over time, and analyze multiple scenarios with different rates of climatic and atmospheric CO2 abundance changes. Consistent with current understanding, the emerging geographic pattern shows N limitation that is stronger in temperate/boreal ecosystems than tropical ecosystems and in pristine areas than highly polluted areas. While the extent and distribution of implied N limitation varies widely between the models, all show some nitrogen limitation of the simulated C sequestration. The magnitude of the N limitation is clearly scenario-dependent, mostly due to the different rates of increased atmospheric CO2 abundance and therefore the extend of CO2 fertilization. Under the most extreme scenario (RCP8.5), an implied nitrogen deficit of 1.9-18.8 Pg N would reduce terrestrial C sequestration by 92-400 Pg C. Assuming the average airborne fraction of 0.6 in the RCP 8.5 scenarios (Jones et al. in review) would cause an increase in atmospheric CO2 abundance of 26-113 ppm by the year 2100, implying an added radiative forcing of 0.15-0.61 Wm-2.

Lipids as paleomarkers to constrain the marine nitrogen cycle.

PubMed

Rush, Darci; Sinninghe Damsté, Jaap S

2017-06-01

Global climate is, in part, regulated by the effect of microbial processes on biogeochemical cycling. The nitrogen cycle, in particular, is driven by microorganisms responsible for the fixation and loss of nitrogen, and the reduction-oxidation transformations of bio-available nitrogen. Within marine systems, nitrogen availability is often the limiting factor in the growth of autotrophic organisms, intrinsically linking the nitrogen and carbon cycles. In order to elucidate the state of these cycles in the past, and help envisage present and future variability, it is essential to understand the specific microbial processes responsible for transforming bio-available nitrogen species. As most microorganisms are soft-bodied and seldom leave behind physical fossils in the sedimentary record, recalcitrant lipid biomarkers are used to unravel microbial processes in the geological past. This review emphasises the recent advances in marine nitrogen cycle lipid biomarkers, underlines the missing links still needed to fully elucidate past shifts in this biogeochemically-important cycle, and provides examples of biomarker applications in the geological past. © 2017 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Decomposition and nitrogen dynamics of 15N-labeled leaf, root, and twig litter in temperate coniferous forests

USGS Publications Warehouse

van Huysen, Tiff L.; Harmon, Mark E.; Perakis, Steven S.; Chen, Hua

2013-01-01

Litter nutrient dynamics contribute significantly to biogeochemical cycling in forest ecosystems. We examined how site environment and initial substrate quality influence decomposition and nitrogen (N) dynamics of multiple litter types. A 2.5-year decomposition study was installed in the Oregon Coast Range and West Cascades using 15N-labeled litter from Acer macrophyllum, Picea sitchensis, and Pseudotsuga menziesii. Mass loss for leaf litter was similar between the two sites, while root and twig litter exhibited greater mass loss in the Coast Range. Mass loss was greatest from leaves and roots, and species differences in mass loss were more prominent in the Coast Range. All litter types and species mineralized N early in the decomposition process; only A. macrophyllum leaves exhibited a net N immobilization phase. There were no site differences with respect to litter N dynamics despite differences in site N availability, and litter N mineralization patterns were species-specific. For multiple litter × species combinations, the difference between gross and net N mineralization was significant, and gross mineralization was 7–20 % greater than net mineralization. The mineralization results suggest that initial litter chemistry may be an important driver of litter N dynamics. Our study demonstrates that greater amounts of N are cycling through these systems than may be quantified by only measuring net mineralization and challenges current leaf-based biogeochemical theory regarding patterns of N immobilization and mineralization.

[Denitrification water treatment with zeolite composite filter by intermittent operation].

PubMed

Qing, Cheng-Song; Bao, Tao; Chen, Tian-Hu; Chen, Dong; Xie, Jing-Jing

2012-12-01

The zeolite composite filters (ZCF) with the size of4-8 mm were prepared using raw zeolite (0.15-0.18 mm) as the main material and the cement as binder. After a combination of material characterizations, such as the void fraction, apparent density, compression strength and surface area, the optimal prepared conditions of composite filters were obtained as follow: weight ratio of m (zeolite): m (cement) = 7 : 3, curing for 15 d under the moisture condition and ambient temperature. Through upflow low-concentration ammonia nitrogen wastewater, ZCF filled in the experimental column was hung with the biological membrane. Thus, intermittent dynamic experiments were conducted, the intermittent operation cycle included adsorption, biological regeneration and drip washing. Until concentration of ammonia nitrogen was more than 2 mg x L(-1) of effluent standards, water in experiment column was firstly emptied, and then blast biological regeneration was conducted. After the filters were bathed with water, the zeolite adsorption-biological regeneration cycle was performed repeatedly. The experimental results show that under conditions of 24 h blast and 5 d of continuous operation period, ammonia nitrogen removal rate is up to 87.6% on average, total nitrogen removal rate reaches 51.2% on average.

Microbially mediated transformations of phosphorus in the sea: new views of an old cycle.

PubMed

Karl, David M

2014-01-01

Phosphorus (P) is a required element for life. Its various chemical forms are found throughout the lithosphere and hydrosphere, where they are acted on by numerous abiotic and biotic processes collectively referred to as the P cycle. In the sea, microorganisms are primarily responsible for P assimilation and remineralization, including recently discovered P reduction-oxidation bioenergetic processes that add new complexity to the marine microbial P cycle. Human-induced enhancement of the global P cycle via mining of phosphate-bearing rock will likely influence the pace of P-cycle dynamics, especially in coastal marine habitats. The inextricable link between the P cycle and cycles of other bioelements predicts future impacts on, for example, nitrogen fixation and carbon dioxide sequestration. Additional laboratory and field research is required to build a comprehensive understanding of the marine microbial P cycle.

Nitrogen expander cycles for large capacity liquefaction of natural gas

NASA Astrophysics Data System (ADS)

Chang, Ho-Myung; Park, Jae Hoon; Gwak, Kyung Hyun; Choe, Kun Hyung

2014-01-01

Thermodynamic study is performed on nitrogen expander cycles for large capacity liquefaction of natural gas. In order to substantially increase the capacity, a Brayton refrigeration cycle with nitrogen expander was recently added to the cold end of the reputable propane pre-cooled mixed-refrigerant (C3-MR) process. Similar modifications with a nitrogen expander cycle are extensively investigated on a variety of cycle configurations. The existing and modified cycles are simulated with commercial process software (Aspen HYSYS) based on selected specifications. The results are compared in terms of thermodynamic efficiency, liquefaction capacity, and estimated size of heat exchangers. The combination of C3-MR with partial regeneration and pre-cooling of nitrogen expander cycle is recommended to have a great potential for high efficiency and large capacity.

A model of milk production in lactating dairy cows in relation to energy and nitrogen dynamics.

PubMed

Johnson, I R; France, J; Cullen, B R

2016-02-01

A generic daily time-step model of a dairy cow, designed to be included in whole-system pasture simulation models, is described that includes growth, milk production, and lactation in relation to energy and nitrogen dynamics. It is a development of a previously described animal growth and metabolism model that describes animal body composition in terms of protein, water, and fat, and energy dynamics in relation to growth requirements, resynthesis of degraded protein, and animal activity. This is further developed to include lactation and fetal growth. Intake is calculated in relation to stage of lactation, pasture availability, supplementary feed, and feed quality. Energy costs associated with urine N excretion and methane fermentation are accounted for. Milk production and fetal growth are then calculated in relation to the overall energy and nitrogen dynamics. The general behavior of the model is consistent with expected characteristics. Simulations using the model as part of a whole-system pasture simulation model (DairyMod) are compared with experimental data where good agreement between pasture, concentrate and forage intake, as well as milk production over 3 consecutive lactation cycles, is observed. The model is shown to be well suited for inclusion in large-scale system simulation models. Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Dynamics of nitrate production and removal as a function of residence time in the hyporheic zone

Treesearch

Jay P. Zarnetske; Roy Haggerty; Steven M. Wondzell; Michelle A. Baker

2011-01-01

Biogeochemical reactions associated with stream nitrogen cycling, such as nitrification and denitrification, can be strongly controlled by water and solute residence times in the hyporheic zone (HZ). We used a whole-stream steady state 15N-Iabeled nitrate and conservative tracer addition to investigate the spatial and temporal physiochemical...

Integrating a process-based ecosystem model with Landsat imagery to assess impacts of forest disturbance on terrestrial carbon dynamics: Case studies in Alabama and Mississippi

USDA-ARS?s Scientific Manuscript database

Forest ecosystems in the southern United States are dramatically altered by three major 26 disturbances: timber harvesting, hurricane, and permanent land conversion. Understanding and quantifying effects of disturbance on forest carbon, nitrogen, and water cycles is critical for sustainable forest m...

Ecology of Nitrogen Fixing, Nitrifying, and Denitrifying Microorganisms in Tropical Forest Soils

PubMed Central

Pajares, Silvia; Bohannan, Brendan J. M.

2016-01-01

Soil microorganisms play important roles in nitrogen cycling within forest ecosystems. Current research has revealed that a wider variety of microorganisms, with unexpected diversity in their functions and phylogenies, are involved in the nitrogen cycle than previously thought, including nitrogen-fixing bacteria, ammonia-oxidizing bacteria and archaea, heterotrophic nitrifying microorganisms, and anammox bacteria, as well as denitrifying bacteria, archaea, and fungi. However, the vast majority of this research has been focused in temperate regions, and relatively little is known regarding the ecology of nitrogen-cycling microorganisms within tropical and subtropical ecosystems. Tropical forests are characterized by relatively high precipitation, low annual temperature fluctuation, high heterogeneity in plant diversity, large amounts of plant litter, and unique soil chemistry. For these reasons, regulation of the nitrogen cycle in tropical forests may be very different from that of temperate ecosystems. This is of great importance because of growing concerns regarding the effect of land use change and chronic-elevated nitrogen deposition on nitrogen-cycling processes in tropical forests. In the context of global change, it is crucial to understand how environmental factors and land use changes in tropical ecosystems influence the composition, abundance and activity of key players in the nitrogen cycle. In this review, we synthesize the limited currently available information regarding the microbial communities involved in nitrogen fixation, nitrification and denitrification, to provide deeper insight into the mechanisms regulating nitrogen cycling in tropical forest ecosystems. We also highlight the large gaps in our understanding of microbially mediated nitrogen processes in tropical forest soils and identify important areas for future research. PMID:27468277

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

DOE PAGES

Scott, Nicole M.; Hess, Matthias; Bouskill, Nick J.; ...

2014-03-25

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance ofmore » genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. Furthermore, these data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems.« less

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scott, Nicole M.; Hess, Matthias; Bouskill, Nick J.

2014-03-25

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance ofmore » genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. These data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems« less

Invasive fishes generate biogeochemical hotspots in a nutrient-limited system.

PubMed

Capps, Krista A; Flecker, Alexander S

2013-01-01

Fishes can play important functional roles in the nutrient dynamics of freshwater systems. Aggregating fishes have the potential to generate areas of increased biogeochemical activity, or hotspots, in streams and rivers. Many of the studies documenting the functional role of fishes in nutrient dynamics have focused on native fish species; however, introduced fishes may restructure nutrient storage and cycling freshwater systems as they can attain high population densities in novel environments. The purpose of this study was to examine the impact of a non-native catfish (Loricariidae: Pterygoplichthys) on nitrogen and phosphorus remineralization and estimate whether large aggregations of these fish generate measurable biogeochemical hotspots within nutrient-limited ecosystems. Loricariids formed large aggregations during daylight hours and dispersed throughout the stream during evening hours to graze benthic habitats. Excretion rates of phosphorus were twice as great during nighttime hours when fishes were actively feeding; however, there was no diel pattern in nitrogen excretion rates. Our results indicate that spatially heterogeneous aggregations of loricariids can significantly elevate dissolved nutrient concentrations via excretion relative to ambient nitrogen and phosphorus concentrations during daylight hours, creating biogeochemical hotspots and potentially altering nutrient dynamics in invaded systems.

Invasive Fishes Generate Biogeochemical Hotspots in a Nutrient-Limited System

PubMed Central

Capps, Krista A.; Flecker, Alexander S.

2013-01-01

Fishes can play important functional roles in the nutrient dynamics of freshwater systems. Aggregating fishes have the potential to generate areas of increased biogeochemical activity, or hotspots, in streams and rivers. Many of the studies documenting the functional role of fishes in nutrient dynamics have focused on native fish species; however, introduced fishes may restructure nutrient storage and cycling freshwater systems as they can attain high population densities in novel environments. The purpose of this study was to examine the impact of a non-native catfish (Loricariidae: Pterygoplichthys) on nitrogen and phosphorus remineralization and estimate whether large aggregations of these fish generate measurable biogeochemical hotspots within nutrient-limited ecosystems. Loricariids formed large aggregations during daylight hours and dispersed throughout the stream during evening hours to graze benthic habitats. Excretion rates of phosphorus were twice as great during nighttime hours when fishes were actively feeding; however, there was no diel pattern in nitrogen excretion rates. Our results indicate that spatially heterogeneous aggregations of loricariids can significantly elevate dissolved nutrient concentrations via excretion relative to ambient nitrogen and phosphorus concentrations during daylight hours, creating biogeochemical hotspots and potentially altering nutrient dynamics in invaded systems. PMID:23342083

Effect of exogenous carbon addition and the freeze-thaw cycle on soil microbes and mineral nitrogen pools1

NASA Astrophysics Data System (ADS)

Hu, Xia; Yin, Peng; Nong, Xiang; Liao, Jinhua

2018-01-01

To elucidate the alpine soil process in winter, the response mechanism of soil mineral nitrogen and soil microbes to exogenous carbon (0 mg C, 1 mg C, 2 mg C, 4 mg C and 8 mg C·g-1 dry soil) and the freeze-thaw cycle (-2 °C, -2 ∼ 2 °C, -20 ∼2°C) were studied by laboratory simulation. The freeze-thaw treatment had no significant effect on microbial biomass nitrogen and the number of bacteria. The soil mineral N pool, the number of fungi, and enzyme activities were obviously affected by the freeze-thaw cycle. A mild freeze-thaw cycle (-2∼2°C) significantly increased the number of fungi and catalase activity, while severe freeze-thaw cycle (-20∼2°C) obviously decreased invertase activity. The results suggested that both the freeze-thaw rate and freeze-thaw temperature amplitudes have a strong effect on soil microbial dynamics in the alpine zone in winter. The results showed that exogenous carbon addition significantly decreased soil NO3-N and NH4 +-N contents, increased soil microbial biomass, the number of microbes, and soil enzyme activities. The results showed that microbial growth in the eastern Tibetan Plateau was somewhat limited by available C. It may represent a larger potential pulse of soil nutrient for alpine plants in the next spring, and may be instrumental for plant community shifts under future climate change predictions due to the possible increased litter addition.

Soil carbon management in large-scale Earth system modelling: implications for crop yields and nitrogen leaching

NASA Astrophysics Data System (ADS)

Olin, S.; Lindeskog, M.; Pugh, T. A. M.; Schurgers, G.; Wårlind, D.; Mishurov, M.; Zaehle, S.; Stocker, B. D.; Smith, B.; Arneth, A.

2015-06-01

We explore cropland management alternatives and the effect these can have on future C and N pools and fluxes using the land use-enabled dynamic vegetation model LPJ-GUESS. Simulated crop production, cropland carbon storage, carbon sequestration and nitrogen leaching from croplands are evaluated and discussed. Compared to the version of LPJ-GUESS that does not include land use dynamics, estimates of soil carbon stocks and nitrogen leaching from terrestrial to aquatic ecosystems were improved. We explore trade-offs between important ecosystem services that can be provided from agricultural fields such as crop yields, retention of nitrogen and carbon storage. These trade-offs are evaluated for current land use and climate and further explored for future conditions within the two future climate change scenarios, RCP 2.6 and 8.5. Our results show that the potential for carbon sequestration due to typical cropland management practices such as no-till and cover-crops proposed in literature is not realised, globally or over larger climatic regions. Our results highlight important considerations to be made when modelling C-N interactions in agricultural ecosystems under future environmental change, and the effects these have on terrestrial biogeochemical cycles.

Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light–dark cycle

DOE PAGES

Welkie, David; Zhang, Xiaohui; Markillie, Meng; ...

2014-12-29

Cyanothece sp. PCC 7822 is an excellent cyanobacterial model organism with great potential to be applied as a biocatalyst for the production of high value compounds. Like other unicellular diazotrophic cyanobacterial species, it has a tightly regulated metabolism synchronized to the light-dark cycle. Utilizing transcriptomic and proteomic methods, we were able to quantify the relationships between transcription and translation underlying central and secondary metabolism in response to nitrogen free, 12 hour light and 12 hour dark conditions.

The Importance of Uncertainty and Sensitivity Analysis in Process-based Models of Carbon and Nitrogen Cycling in Terrestrial Ecosystems with Particular Emphasis on Forest Ecosystems — Selected Papers from a Workshop Organized by the International Society for Ecological Modelling (ISEM) at the Third Biennal Meeting of the International Environmental Modelling and Software Society (IEMSS) in Burlington, Vermont, USA, August 9-13, 2006

USGS Publications Warehouse

Larocque, Guy R.; Bhatti, Jagtar S.; Liu, Jinxun; Ascough, James C.; Gordon, Andrew M.

2008-01-01

Many process-based models of carbon (C) and nitrogen (N) cycles have been developed for terrestrial ecosystems, including forest ecosystems. They address many basic issues of ecosystems structure and functioning, such as the role of internal feedback in ecosystem dynamics. The critical factor in these phenomena is scale, as these processes operate at scales from the minute (e.g. particulate pollution impacts on trees and other organisms) to the global (e.g. climate change). Research efforts remain important to improve the capability of such models to better represent the dynamics of terrestrial ecosystems, including the C, nutrient, (e.g. N) and water cycles. Existing models are sufficiently well advanced to help decision makers develop sustainable management policies and planning of terrestrial ecosystems, as they make realistic predictions when used appropriately. However, decision makers must be aware of their limitations by having the opportunity to evaluate the uncertainty associated with process-based models (Smith and Heath, 2001 and Allen et al., 2004). The variation in scale of issues currently being addressed by modelling efforts makes the evaluation of uncertainty a daunting task.

Leaf litter dynamics and nitrous oxide emission in a Mediterranean riparian forest: implications for soil nitrogen dynamics.

PubMed

Bernal, S; Butturini, A; Nin, E; Sabater, F; Sabater, S

2003-01-01

Mediterranean riparian zones can experience severe drought periods that lead to low soil moisture content, which dramatically affects their performance as nitrate removal systems. In the Mediterranean riparian zone of this study, we determined that N2O emission was practically nil. To understand the role of forest floor processes in nitrogen retention of a Mediterranean riparian area, we studied leaf litter dynamics of two tree species, London planetree [Platanus x acerifolia (Aiton) Willd.] and alder [Alnus glutinosa (L.) Gaertn.], for two years, along with soil nitrogen mineralization rates. Annual leaf litter fall equaled 562.6 +/- 10.1 (standard error) g dry wt. m(-2), 68% of which was planetree and 32% of which was alder. The temporal distribution of litterfall showed a two-peak annual cycle, one occurring in midsummer, the other in autumn. Planetree provided the major input of organic nitrogen to the forest floor, and the amount of planetree leaves remaining on the forest floor was equivalent to approximately four years of stock. Leaf litter decomposition was three times higher for alder (decay coefficient [k] = 1.13 yr(-1)) than for planetree (k = 0.365 yr(-1)). Mineralization rates showed a seasonal pattern, with the maximum rate in summer (1.92 mg N kg(-1) d(-1)). Although the forest floor was an important sink for nitrogen due to planetree leaf accumulation, 7.5% of this leaf litter was scoured to the streambed by wind. This loss was irrelevant for alder leaves. Due to the litter quality, the forest floor of this Mediterranean riparian forest acts as a nitrogen sink.

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tolar, Bradley B.; Herrmann, Jonathan; Bargar, John R.

In this paper, knowledge of the molecular ecology and environmental determinants of ammonia-oxidizing organisms is critical to understanding and predicting the global nitrogen (N) and carbon cycles, but an incomplete biochemical picture hinders in vitro studies of N-cycling enzymes. Although an integrative structural and dynamic characterization at the atomic scale would advance our understanding of function tremendously, structural knowlede of key N-cycling enzymes from ecologically-relevant ammonia oxidizers is unfortunately extremely limited. Here, we discuss the challenges and opportunities for examining the ecology of ammonia-oxidizing organisms, particularly uncultivated Thaumarchaeota, though (meta)genome-driven structural biology of the enzymes ammonia monooxygenase (AMO) andmore » nitrite reductase (NirK).« less

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea

DOE PAGES

Tolar, Bradley B.; Herrmann, Jonathan; Bargar, John R.; ...

2017-07-05

In this paper, knowledge of the molecular ecology and environmental determinants of ammonia-oxidizing organisms is critical to understanding and predicting the global nitrogen (N) and carbon cycles, but an incomplete biochemical picture hinders in vitro studies of N-cycling enzymes. Although an integrative structural and dynamic characterization at the atomic scale would advance our understanding of function tremendously, structural knowlede of key N-cycling enzymes from ecologically-relevant ammonia oxidizers is unfortunately extremely limited. Here, we discuss the challenges and opportunities for examining the ecology of ammonia-oxidizing organisms, particularly uncultivated Thaumarchaeota, though (meta)genome-driven structural biology of the enzymes ammonia monooxygenase (AMO) andmore » nitrite reductase (NirK).« less

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea.

PubMed

Tolar, Bradley B; Herrmann, Jonathan; Bargar, John R; van den Bedem, Henry; Wakatsuki, Soichi; Francis, Christopher A

2017-10-01

Knowledge of the molecular ecology and environmental determinants of ammonia-oxidizing organisms is critical to understanding and predicting the global nitrogen (N) and carbon cycles, but an incomplete biochemical picture hinders in vitro studies of N-cycling enzymes. Although an integrative structural and dynamic characterization at the atomic scale would advance our understanding of function tremendously, structural knowledge of key N-cycling enzymes from ecologically relevant ammonia oxidizers is unfortunately extremely limited. Here, we discuss the challenges and opportunities for examining the ecology of ammonia-oxidizing organisms, particularly uncultivated Thaumarchaeota, through (meta)genome-driven structural biology of the enzymes ammonia monooxygenase (AMO) and nitrite reductase (NirK). © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Climate-mediated nitrogen and carbon dynamics in a tropical watershed

NASA Astrophysics Data System (ADS)

Ballantyne, A. P.; Baker, P. A.; Fritz, S. C.; Poulter, B.

2011-06-01

Climate variability affects the capacity of the biosphere to assimilate and store important elements, such as nitrogen and carbon. Here we present biogeochemical evidence from the sediments of tropical Lake Titicaca indicating that large hydrologic changes in response to global glacial cycles during the Quaternary were accompanied by major shifts in ecosystem state. During prolonged glacial intervals, lake level was high and the lake was in a stable nitrogen-limited state. In contrast, during warm dry interglacials lake level fell and rates of nitrogen concentrations increased by a factor of 4-12, resulting in a fivefold to 24-fold increase in organic carbon concentrations in the sediments due to increased primary productivity. Observed periods of increased primary productivity were also associated with an apparent increase in denitrification. However, the net accumulation of nitrogen during interglacial intervals indicates that increased nitrogen supply exceeded nitrogen losses due to denitrification, thereby causing increases in primary productivity. Although primary productivity in tropical ecosystems, especially freshwater ecosystems, tends to be nitrogen limited, our results indicate that climate variability may lead to changes in nitrogen availability and thus changes in primary productivity. Therefore some tropical ecosystems may shift between a stable state of nitrogen limitation and a stable state of nitrogen saturation in response to varying climatic conditions.

Evaluation of new alternatives in wastewater treatment plants based on dynamic modelling and life cycle assessment (DM-LCA).

PubMed

Bisinella de Faria, A B; Spérandio, M; Ahmadi, A; Tiruta-Barna, L

2015-11-01

With a view to quantifying the energy and environmental advantages of Urine Source-Separation (USS) combined with different treatment processes, five wastewater treatment plant (WWTP) scenarios were compared to a reference scenario using Dynamic Modelling (DM) and Life Cycle Assessment (LCA), and an integrated DM-LCA framework was thus developed. Dynamic simulations were carried out in BioWin(®) in order to obtain a realistic evaluation of the dynamic behaviour and performance of plants under perturbation. LCA calculations were performed within Umberto(®) using the Ecoinvent database. A Python™ interface was used to integrate and convert simulation data and to introduce them into Umberto(®) to achieve a complete LCA evaluation comprising foreground and background processes. Comparisons between steady-state and dynamic simulations revealed the importance of considering dynamic aspects such as nutrient and flow peaks. The results of the evaluation highlighted the potential of the USS scenario for nutrient recovery whereas the Enhanced Primary Clarification (EPC) scenario gave increased biogas production and also notably decreased aeration consumption, leading to a positive energy balance. Both USS and EPC scenarios also showed increased stability of plant operation, with smaller daily averages of total nitrogen and phosphorus. In this context, USS and EPC results demonstrated that the coupled USS + EPC scenario and its combinations with agricultural spreading of N-rich effluent and nitritation/anaerobic deammonification could present an energy-positive balance with respectively 27% and 33% lower energy requirements and an increase in biogas production of 23%, compared to the reference scenario. The coupled scenarios also presented lesser environmental impacts (reduction of 31% and 39% in total endpoint impacts) along with effluent quality well within the specified limits. The marked environmental performance (reduction of global warming) when nitrogen is used in agriculture shows the importance of future research on sustainable solutions for nitrogen recovery. The contribution analysis of midpoint impacts also showed hotspots that it will be important to optimize further, such as plant infrastructure and direct N2O emissions. Copyright © 2015 Elsevier Ltd. All rights reserved.

Coupled nutrient cycling determines tropical forest trajectory under elevated CO2.

NASA Astrophysics Data System (ADS)

Bouskill, N.; Zhu, Q.; Riley, W. J.

2017-12-01

Tropical forests have a disproportionate capacity to affect Earth's climate relative to their areal extent. Despite covering just 12 % of land surface, tropical forests account for 35 % of global net primary productivity and are among the most significant of terrestrial carbon stores. As atmospheric CO2 concentrations increase over the next century, the capacity of tropical forests to assimilate and sequester anthropogenic CO2 depends on limitation by multiple factors, including the availability of soil nutrients. Phosphorus availability has been considered to be the primary factor limiting metabolic processes within tropical forests. However, recent evidence points towards strong spatial and temporal co-limitation of tropical forests by both nitrogen and phosphorus. Here, we use the Accelerated Climate Modeling for Energy (ACME) Land Model (ALMv1-ECA-CNP) to examine how nutrient cycles interact and affect the trajectory of the tropical forest carbon sink under, (i) external nutrient input, (ii) climate (iii) elevated CO2, and (iv) a combination of 1-3. ALMv1 includes recent theoretical advances in representing belowground competition between roots, microbes and minerals for N and P uptake, explicit interactions between the nitrogen and phosphorus cycles (e.g., phosphatase production and nitrogen fixation), the dynamic internal allocation of plant N and P resources, and the integration of global datasets of plant physiological traits. We report nutrient fertilization (N, P, N+P) predictions for four sites in the tropics (El Verde, Puerto Rico, Barro Colorado Island, Panama, Manaus, Brazil and the Osa Peninsula, Coast Rica) to short-term nutrient fertilization (N, P, N+P), and benchmarking of the model against a meta-analysis of forest fertilization experiments. Subsequent simulations focus on the interaction of the carbon, nitrogen, and phosphorus cycles across the tropics with a focus on the implications of coupled nutrient cycling and the fate of the tropical forest carbon sink. Our results highlight the importance of transient CNP allocation, leaf-level stoichiometric controls on photosynthesis, and trade-offs between above and belowground plant investments.

Leaky nitrogen cycle in pristine African montane rainforest soil

NASA Astrophysics Data System (ADS)

Rütting, Tobias; Cizungu Ntaboba, Landry; Roobroeck, Dries; Bauters, Marijn; Huygens, Dries; Boeckx, Pascal

2015-10-01

Many pristine humid tropical forests show simultaneously high nitrogen (N) richness and sustained loss of bioavailable N forms. To better understand this apparent upregulation of the N cycle in tropical forests, process-based understanding of soil N transformations, in geographically diverse locations, remains paramount. Field-based evidence is limited and entirely lacking for humid tropical forests on the African continent. This study aimed at filling both knowledge gaps by monitoring N losses and by conducting an in situ 15N labeling experiment in the Nyungwe tropical montane forest in Rwanda. Here we show that this tropical forest shows high nitrate (NO3-) leaching losses, confirming findings from other parts of the world. Gross N transformation rates point to an open soil N cycle with mineralized N nitrified rather than retained via immobilization; gross immobilization of NH4+ and NO3- combined accounted for 37% of gross mineralization, and plant N uptake is dominated by ammonium (NH4+). This study provided new process understanding of soil N cycling in humid tropical forests and added geographically independent evidence that humid tropical forests are characterized by soil N dynamics and N inputs sustaining bioavailable N loss.

NITROGEN OUTPUTS FROM FECAL AND URINE DEPOSITION OF SMALL MAMMALS: IMPLICATIONS FOR NITROGEN CYCLING

EPA Science Inventory

The contribution of small mammals to nitrogen cycling is poorly understood, but it could have reverberations back to the producer community by maintaining or perhaps magnifying nitrogen availability. Our objective was to model nitrogen outputs (deposition of feces and urine) of ...

NITROGEN OUTPUTS OF SMALL MAMMALS FROM FECAL AND URINE DEPOSITION: IMPLICATIONS FOR NITROGEN CYCLING

EPA Science Inventory

The contribution of small mammals in nitrogen cycling is poorly understood and could have reverberations back to the producer community by maintaining or even magnifying increased nitrogen availability. Our objective was to model nitrogen outputs (deposition of feces and urine) ...

Nitrogen and Oxygen Isotopic Studies of the Marine Nitrogen Cycle

NASA Astrophysics Data System (ADS)

Casciotti, Karen L.

2016-01-01

The marine nitrogen cycle is a complex web of microbially mediated reactions that control the inventory, distribution, and speciation of nitrogen in the marine environment. Because nitrogen is a major nutrient that is required by all life, its availability can control biological productivity and ecosystem structure in both surface and deep-ocean communities. Stable isotopes of nitrogen and oxygen in nitrate and nitrite have provided new insights into the rates and distributions of marine nitrogen cycle processes, especially when analyzed in combination with numerical simulations of ocean circulation and biogeochemistry. This review highlights the insights gained from dual-isotope studies applied at regional to global scales and their incorporation into oceanic biogeochemical models. These studies represent significant new advances in the use of isotopic measurements to understand the modern nitrogen cycle, with implications for the study of past ocean productivity, oxygenation, and nutrient status.

Nitrogen fixation sustained productivity in the wake of the Palaeoproterozoic Great Oxygenation Event.

PubMed

Luo, Genming; Junium, Christopher K; Izon, Gareth; Ono, Shuhei; Beukes, Nicolas J; Algeo, Thomas J; Cui, Ying; Xie, Shucheng; Summons, Roger E

2018-03-07

The marine nitrogen cycle is dominated by redox-controlled biogeochemical processes and, therefore, is likely to have been revolutionised in response to Earth-surface oxygenation. The details, timing, and trajectory of nitrogen cycle evolution, however, remain elusive. Here we couple nitrogen and carbon isotope records from multiple drillcores through the Rooihoogte-Timeball Hill Formations from across the Carletonville area of the Kaapvaal Craton where the Great Oxygenation Event (GOE) and its aftermath are recorded. Our data reveal that aerobic nitrogen cycling, featuring metabolisms involving nitrogen oxyanions, was well established prior to the GOE and that ammonium may have dominated the dissolved nitrogen inventory. Pronounced signals of diazotrophy imply a stepwise evolution, with a temporary intermediate stage where both ammonium and nitrate may have been scarce. We suggest that the emergence of the modern nitrogen cycle, with metabolic processes that approximate their contemporary balance, was retarded by low environmental oxygen availability.

Simulating coupled carbon and nitrogen dynamics following bark beetle outbreaks in the western United States

Treesearch

Steven L. Edburg; Jeffrey A. Hicke; David M. Lawrence; Peter E. Thornton

2011-01-01

Insect outbreaks are major ecosystem disturbances, affecting a similar area as forest fires annually across North America. Tree mortality caused by bark beetle outbreaks alters carbon cycling in the first several years following the disturbance by reducing stand-level primary production and by increasing the amount of dead organic matter available for decomposition....

The Influence of Leaf Fall and Organic Carbon Availability on Nitrogen Cycling in a Headwater Stream

NASA Astrophysics Data System (ADS)

Thomas, S. A.; Kristin, A.; Doyle, B.; Goodale, C. L.; Gurwick, N. P.; Lepak, J.; Kulkari, M.; McIntyre, P.; McCalley, C.; Raciti, S.; Simkin, S.; Warren, D.; Weiss, M.

2005-05-01

The study of allochthonous carbon has a long and distinguished history in stream ecology. Despite this legacy, relatively little is known regarding the influence of leaf litter on nutrient dynamics. We conducted 15N-NO3 tracer additions to a headwater stream in upstate New York before and after autumn leaf fall to assess the influence of leaf litter on nitrogen spiraling. In addition, we amended the stream with labile dissolved organic carbon (as acetate) midway through each experiment to examine whether organic carbon availability differentially stimulated nitrogen cycling. Leaf standing stocks increased from 53 to 175 g dry mass m-2 and discharge more than tripled (6 to 20 L s-1) between the pre- and post-leaf fall period. In contrast, nitrate concentration fell from approximately 50 to less then 10 ug L-1. Despite higher discharge, uptake length was shorter following leaf fall under both ambient (250 and 72 m, respectively) and DOC amended (125 and 45 m) conditions. Uptake velocity increased dramatically following leaf fall, despite a slight decline in the areal uptake rate. Dissolved N2 gas samples were also collected to estimate denitrification rates under each experimental condition. The temporal extent of increased nitrogen retention will also be explored.

Hydrologic control on redox and nitrogen dynamics in a peatland soil.

PubMed

Rubol, Simonetta; Silver, Whendee L; Bellin, Alberto

2012-08-15

Soils are a dominant source of nitrous oxide (N(2)O), a potent greenhouse gas. However, the complexity of the drivers of N(2)O production and emissions has hindered our ability to predict the magnitude and spatial dynamics of N(2)O fluxes. Soil moisture can be considered a key driver because it influences oxygen (O(2)) supply, which feeds back on N(2)O sources (nitrification versus denitrification) and sinks (reduction to dinitrogen). Soil water content is directly linked to O(2) and redox potential, which regulate microbial metabolism and chemical transformations in the environment. Despite its importance, only a few laboratory studies have addressed the effects of hydrological transient dynamics on nitrogen (N) cycling in the vadose zone. To further investigate these aspects, we performed a long term experiment in a 1.5 m depth soil column supplemented by chamber experiments. With this experiment, we aimed to investigate how soil moisture dynamics influence redox sensitive N cycling in a peatland soil. As expected, increased soil moisture lowered O(2) concentrations and redox potential in the soil. The decline was more severe for prolonged saturated conditions than for short events and at deep than at the soil surface. Gaseous and dissolved N(2)O, dissolved nitrate (NO(3)(-)) and ammonium (NH(4)(+)) changed considerably along the soil column profile following trends in soil O(2) and redox potential. Hot spots of N(2)O concentrations corresponded to high variability in soil O(2) in the upper and lower parts of the column. Results from chamber experiments confirmed high NO(3)(-) reduction potential in soils, particularly from the bottom of the column. Under our experimental conditions, we identified a close coupling of soil O(2) and N(2)O dynamics, both of which lagged behind soil moisture changes. These results highlight the relationship among soil hydrologic properties, redox potential and N cycling, and suggest that models working at a daily scale need to consider soil O(2) dynamics in addition to soil moisture dynamics to accurately predict patterns in N(2)O fluxes. Copyright © 2012 Elsevier B.V. All rights reserved.

Internal cycling, not external loading, decides the nutrient limitation in eutrophic lake: A dynamic model with temporal Bayesian hierarchical inference.

PubMed

Wu, Zhen; Liu, Yong; Liang, Zhongyao; Wu, Sifeng; Guo, Huaicheng

2017-06-01

Lake eutrophication is associated with excessive anthropogenic nutrients (mainly nitrogen (N) and phosphorus (P)) and unobserved internal nutrient cycling. Despite the advances in understanding the role of external loadings, the contribution of internal nutrient cycling is still an open question. A dynamic mass-balance model was developed to simulate and measure the contributions of internal cycling and external loading. It was based on the temporal Bayesian Hierarchical Framework (BHM), where we explored the seasonal patterns in the dynamics of nutrient cycling processes and the limitation of N and P on phytoplankton growth in hyper-eutrophic Lake Dianchi, China. The dynamic patterns of the five state variables (Chla, TP, ammonia, nitrate and organic N) were simulated based on the model. Five parameters (algae growth rate, sediment exchange rate of N and P, nitrification rate and denitrification rate) were estimated based on BHM. The model provided a good fit to observations. Our model results highlighted the role of internal cycling of N and P in Lake Dianchi. The internal cycling processes contributed more than external loading to the N and P changes in the water column. Further insights into the nutrient limitation analysis indicated that the sediment exchange of P determined the P limitation. Allowing for the contribution of denitrification to N removal, N was the more limiting nutrient in most of the time, however, P was the more important nutrient for eutrophication management. For Lake Dianchi, it would not be possible to recover solely by reducing the external watershed nutrient load; the mechanisms of internal cycling should also be considered as an approach to inhibit the release of sediments and to enhance denitrification. Copyright © 2017 Elsevier Ltd. All rights reserved.

New, national bottom-up estimate for tree-based biological nitrogen fixation in the US

EPA Science Inventory

Nitrogen is a limiting nutrient in many ecosystems, but is also a chief pollutant from human activity. Quantifying human impacts on the nitrogen cycle and investigating natural ecosystem nitrogen cycling both require an understanding of the magnitude of nitrogen inputs from biolo...

Nitrogen dynamics in managed boreal forests: Recent advances and future research directions.

PubMed

Sponseller, Ryan A; Gundale, Michael J; Futter, Martyn; Ring, Eva; Nordin, Annika; Näsholm, Torgny; Laudon, Hjalmar

2016-02-01

Nitrogen (N) availability plays multiple roles in the boreal landscape, as a limiting nutrient to forest growth, determinant of terrestrial biodiversity, and agent of eutrophication in aquatic ecosystems. We review existing research on forest N dynamics in northern landscapes and address the effects of management and environmental change on internal cycling and export. Current research foci include resolving the nutritional importance of different N forms to trees and establishing how tree-mycorrhizal relationships influence N limitation. In addition, understanding how forest responses to external N inputs are mediated by above- and belowground ecosystem compartments remains an important challenge. Finally, forestry generates a mosaic of successional patches in managed forest landscapes, with differing levels of N input, biological demand, and hydrological loss. The balance among these processes influences the temporal patterns of stream water chemistry and the long-term viability of forest growth. Ultimately, managing forests to keep pace with increasing demands for biomass production, while minimizing environmental degradation, will require multi-scale and interdisciplinary perspectives on landscape N dynamics.

Regime Shift and Microbial Dynamics in a Sequencing Batch Reactor for Nitrification and Anammox Treatment of Urine ▿†

PubMed Central

Bürgmann, Helmut; Jenni, Sarina; Vazquez, Francisco; Udert, Kai M.

2011-01-01

The microbial population and physicochemical process parameters of a sequencing batch reactor for nitrogen removal from urine were monitored over a 1.5-year period. Microbial community fingerprinting (automated ribosomal intergenic spacer analysis), 16S rRNA gene sequencing, and quantitative PCR on nitrogen cycle functional groups were used to characterize the microbial population. The reactor combined nitrification (ammonium oxidation)/anammox with organoheterotrophic denitrification. The nitrogen elimination rate initially increased by 400%, followed by an extended period of performance degradation. This phase was characterized by accumulation of nitrite and nitrous oxide, reduced anammox activity, and a different but stable microbial community. Outwashing of anammox bacteria or their inhibition by oxygen or nitrite was insufficient to explain reactor behavior. Multiple lines of evidence, e.g., regime-shift analysis of chemical and physical parameters and cluster and ordination analysis of the microbial community, indicated that the system had experienced a rapid transition to a new stable state that led to the observed inferior process rates. The events in the reactor can thus be interpreted to be an ecological regime shift. Constrained ordination indicated that the pH set point controlling cycle duration, temperature, airflow rate, and the release of nitric and nitrous oxides controlled the primarily heterotrophic microbial community. We show that by combining chemical and physical measurements, microbial community analysis and ecological theory allowed extraction of useful information about the causes and dynamics of the observed process instability. PMID:21724875

Atmosphere-Forest Exchange: Important Questions Regarding the Atmosphere's Role in the Delivery of Nutrient Nitrogen and Impacts on Nitrogen and Carbon Cycling

NASA Astrophysics Data System (ADS)

Carroll, M.; Shepson, P. B.; Bertman, S. B.; Sparks, J. P.; Holland, E. A.

2002-12-01

Atmosphere-Forest Exchange: Important Questions Regarding the Atmosphere's Role in the Delivery of Nutrient Nitrogen and Impacts on Nitrogen and Carbon Cycling Atmospheric composition and chemistry directly affect ecosystem nitrogen cycling and indirectly affect ecosystem carbon cycling and storage. Current understanding of atmosphere-forest nitrogen exchange and subsequent impacts is based almost exclusively on nitrogen deposition data obtained from networks using buckets placed in open areas, studies involving inorganic nitrogen, frequently with enhanced N deposition inputs applied only to soils, and that ignore multiple stresses (e.g., the combined effects of aerosols, ozone exposure, elevated CO2, and drought). Current models of nitrogen cycling treat deposited nitrogen (e.g., HNO3 and NO3-) as a permanent sink whereas data appear to indicate that photolytic and heterogeneous chemical processes occurring on surfaces and in dew can result in the re-evolution of gaseous species such as NO and HONO. Similarly, the direct uptake of gaseous nitrogen compounds by foliage has been neglected, compromising conclusions drawn from deposition experiments and ignoring a mechanism that may significantly affect nitrogen cycling and carbon storage, one that may become more significant with future atmospheric and climate change. We hypothesize that the atmosphere plays a significant role in the delivery of nutrient nitrogen to the N-limited mixed hardwood forest at the PROPHET research site at the University of Michigan Biological Station. We assert that a complete understanding of atmosphere- biosphere interactions and feedbacks is required to develop a predictive capability regarding forest response to increasing atmospheric CO2, reactive nitrogen, oxidants, and aerosols, increasing nitrogen and acidic deposition, and anticipated climate change. We further assert that conclusions drawn from studies that are limited to inorganic nitrogen, fertilization of soils, and/or that neglect the role of the canopy (in N uptake and/or remobilization) may not produce a complete understanding of N and C cycling in terrestrial ecosystems, including atmosphere-biosphere interactions and feedbacks. Here, as part of a new PROPHET focus on Biosphere Exchange of Atmospheric Carbon and Odd Nitrogen (BEACON), we identify a number of issues associated with nitrogen limited forest ecosystems and nitrogen saturation and important science questions that require collaborative studies involving the atmospheric and biospheric science communities.

Implications of a More Comprehensive Nitrogen Cycle in a Global Biogeochemical Ocean Model

NASA Astrophysics Data System (ADS)

Six, K. D.; Ilyina, T.

2016-02-01

Nitrogen plays a crucial role for nearly all living organisms in the Earth system. Changes in the marine nitrogen cycle not only alter the marine biota, but will also have an impact on the marine carbon cycle and, in turn, on climate due to the close coupling of the carbon-nitrogen cycle. The understanding of processes and controls of the marine nitrogen cycle is therefore a prerequisite to reduce uncertainties in the prediction of future climate. Nevertheless, most ocean biogeochemical components of modern Earth system models have a rather simplistic representation of marine N-cycle mainly focusing on nitrate. Here we present results of the HAMburg Ocean Carbon Cycle model (HAMOCC) as part of the MPI-ESM which was extended by a prognostic representation of ammonium and nitrite to resolve important processes of the marine N-cycle such as nitrification and anaerobic ammonium oxidation (anammox). Additionally, we updated the production of nitrous oxide, an important greenhouse gas, allowing for two sources from oxidation of ammonium (nitrification) and from reduction of nitrite (nitrifier-denitrification) at low oxygen concentrations. Besides an extended model data comparison we discuss the following aspects of the N-cycle by model means: (1) contribution of anammox to the loss of fixed nitrogen, and (2) production and emission of marine nitrous oxide.

Highly dynamic cellular-level response of symbiotic coral to a sudden increase in environmental nitrogen.

PubMed

Kopp, C; Pernice, M; Domart-Coulon, I; Djediat, C; Spangenberg, J E; Alexander, D T L; Hignette, M; Meziane, T; Meibom, A

2013-05-14

Metabolic interactions with endosymbiotic photosynthetic dinoflagellate Symbiodinium spp. are fundamental to reef-building corals (Scleractinia) thriving in nutrient-poor tropical seas. Yet, detailed understanding at the single-cell level of nutrient assimilation, translocation, and utilization within this fundamental symbiosis is lacking. Using pulse-chase (15)N labeling and quantitative ion microprobe isotopic imaging (NanoSIMS; nanoscale secondary-ion mass spectrometry), we visualized these dynamic processes in tissues of the symbiotic coral Pocillopora damicornis at the subcellular level. Assimilation of ammonium, nitrate, and aspartic acid resulted in rapid incorporation of nitrogen into uric acid crystals (after ~45 min), forming temporary N storage sites within the dinoflagellate endosymbionts. Subsequent intracellular remobilization of this metabolite was accompanied by translocation of nitrogenous compounds to the coral host, starting at ~6 h. Within the coral tissue, nitrogen is utilized in specific cellular compartments in all four epithelia, including mucus chambers, Golgi bodies, and vesicles in calicoblastic cells. Our study shows how nitrogen-limited symbiotic corals take advantage of sudden changes in nitrogen availability; this opens new perspectives for functional studies of nutrient storage and remobilization in microbial symbioses in changing reef environments. The methodology applied, combining transmission electron microscopy with nanoscale secondary-ion mass spectrometry (NanoSIMS) imaging of coral tissue labeled with stable isotope tracers, allows quantification and submicrometric localization of metabolic fluxes in an intact symbiosis. This study opens the way for investigations of physiological adaptations of symbiotic systems to nutrient availability and for increasing knowledge of global nitrogen and carbon biogeochemical cycling.

Nitrogen in rock: Occurrences and biogeochemical implications

USGS Publications Warehouse

Holloway, J.M.; Dahlgren, R.A.

2002-01-01

There is a growing interest in the role of bedrock in global nitrogen cycling and potential for increased ecosystem sensitivity to human impacts in terrains with elevated background nitrogen concentrations. Nitrogen-bearing rocks are globally distributed and comprise a potentially large pool of nitrogen in nutrient cycling that is frequently neglected because of a lack of routine analytical methods for quantification. Nitrogen in rock originates as organically bound nitrogen associated with sediment, or in thermal waters representing a mixture of sedimentary, mantle, and meteoric sources of nitrogen. Rock nitrogen concentrations range from trace levels (>200 mg N kg -1) in granites to ecologically significant concentrations exceeding 1000 mg N kg -1 in some sedimentary and metasedimentary rocks. Nitrate deposits accumulated in arid and semi-arid regions are also a large potential pool. Nitrogen in rock has a potentially significant impact on localized nitrogen cycles. Elevated nitrogen concentrations in water and soil have been attributed to weathering of bedrock nitrogen. In some environments, nitrogen released from bedrock may contribute to nitrogen saturation of terrestrial ecosystems (more nitrogen available than required by biota). Nitrogen saturation results in leaching of nitrate to surface and groundwaters, and, where soils are formed from ammonium-rich bedrock, the oxidation of ammonium to nitrate may result in soil acidification, inhibiting revegetation in certain ecosystems. Collectively, studies presented in this article reveal that geologic nitrogen may be a large and reactive pool with potential for amplification of human impacts on nitrogen cycling in terrestrial and aquatic ecosystems.

Nitrogen Cycle Evaluation (NiCE) Chip for the Simultaneous Analysis of Multiple N-Cycle Associated Genes.

PubMed

Oshiki, Mamoru; Segawa, Takahiro; Ishii, Satoshi

2018-02-02

Various microorganisms play key roles in the Nitrogen (N) cycle. Quantitative PCR (qPCR) and PCR-amplicon sequencing of the N cycle functional genes allow us to analyze the abundance and diversity of microbes responsible in the N transforming reactions in various environmental samples. However, analysis of multiple target genes can be cumbersome and expensive. PCR-independent analysis, such as metagenomics and metatranscriptomics, is useful but expensive especially when we analyze multiple samples and try to detect N cycle functional genes present at relatively low abundance. Here, we present the application of microfluidic qPCR chip technology to simultaneously quantify and prepare amplicon sequence libraries for multiple N cycle functional genes as well as taxon-specific 16S rRNA gene markers for many samples. This approach, named as N cycle evaluation (NiCE) chip, was evaluated by using DNA from pure and artificially mixed bacterial cultures and by comparing the results with those obtained by conventional qPCR and amplicon sequencing methods. Quantitative results obtained by the NiCE chip were comparable to those obtained by conventional qPCR. In addition, the NiCE chip was successfully applied to examine abundance and diversity of N cycle functional genes in wastewater samples. Although non-specific amplification was detected on the NiCE chip, this could be overcome by optimizing the primer sequences in the future. As the NiCE chip can provide high-throughput format to quantify and prepare sequence libraries for multiple N cycle functional genes, this tool should advance our ability to explore N cycling in various samples. Importance. We report a novel approach, namely Nitrogen Cycle Evaluation (NiCE) chip by using microfluidic qPCR chip technology. By sequencing the amplicons recovered from the NiCE chip, we can assess diversities of the N cycle functional genes. The NiCE chip technology is applicable to analyze the temporal dynamics of the N cycle gene transcriptions in wastewater treatment bioreactors. The NiCE chip can provide high-throughput format to quantify and prepare sequence libraries for multiple N cycle functional genes. While there is a room for future improvement, this tool should significantly advance our ability to explore the N cycle in various environmental samples. Copyright © 2018 American Society for Microbiology.

Investigating the initial stages of soil formation in glacier forefields using the new biogeochemical model: SHIMMER

NASA Astrophysics Data System (ADS)

Bradley, James; Anesio, Alexandre; Arndt, Sandra; Sabacka, Marie; Barker, Gary; Benning, Liane; Blacker, Joshua; Singarayer, Joy; Tranter, Martyn; Yallop, Marian

2016-04-01

Glaciers and ice sheets in Polar and alpine regions are retreating in response to recent climate warming, exposing terrestrial ecosystems that have been locked under the ice for thousands of years. Exposed soils exhibit successional characteristics that can be characterised using a chronosequence approach. Decades of empirical research in glacier forefields has shown that soils are quickly colonised by microbes which drive biogeochemical cycling of elements and affect soil properties including nutrient concentrations, carbon fluxes and soil stability (Bradley et al, 2014). The characterisation of these soils is important for our understanding of the cycling of organic matter under extreme environmental and nutrient limiting conditions, and their potential contribution to global biogeochemical cycles. This is particularly important as these new areas will become more geographically expansive with continued ice retreat. SHIMMER (Soil biogeocHemIcal Model of Microbial Ecosystem Response) (Bradley et al, 2015) is a new mathematical model that simulates biogeochemical and microbial dynamics in glacier forefields. The model captures, explores and predicts the growth of different microbial groups (classified by function), and the associated cycling of carbon, nitrogen and phosphorus along a chronosequence. SHIMMER improves typical soil model formulations by including explicit representation of microbial dynamics, and those processes which are shown to be important for glacier forefields. For example, we categorise microbial groups by function to represent the diversity of soil microbial communities, and include the different metabolic needs and physiological pathways of microbial organisms commonly found in glacier forefields (e.g. microbes derived from underneath the glacier, typical soil bacteria, and microbes that can fix atmospheric nitrogen and assimilate soil nitrogen). Here, we present data from a study where we integrated modelling using SHIMMER with empirical observations from chronosequences from the forefield of Midtre Lovénbreen, Svalbard (78°N), to investigate the first 120 years of soil development. We carried out an in depth analysis of the model dynamics and determined the most sensitive parameters. We then used laboratory measurements to derive values for those parameters: bacterial growth rate, growth efficiency and temperature dependency. By applying the model to the High-Arctic forefield and integrating the measured parameter values, we could refine the model and easily predict the rapid accumulation of microbial biomass that was observed in our field data. Furthermore, we show that the bacterial production is dominated by autotrophy (rather than heterotrophy). Heterotrophic production in young soils (0-20 years) is supported by labile substrate, whereas carbon stocks in older soils (60-120 years) are more refractory. Nitrogen fixing organisms are responsible for the initial accumulation of available nitrates in the soil. However, microbial processes alone do not explain the build-up of organic matter observed in the field data record. Consequently, the model infers that allochthonous deposition of organic material may play a significant contributory role that could accelerate or facilitate further microbial growth. SHIMMER provides a quantitative evaluation on the dynamics of glacier forefield systems that have previously largely been explored through qualitative interpretation of datasets. References Bradley J.A., Singarayer J.S., Anesio A.M. (2014) Microbial community dynamics in the forefield of glaciers. Proceedings Biological sciences / The Royal Society 281(1795), 2793-2802. (doi:10.1098/rspb.2014.0882). Bradley J.A., Anesio A.M., Singarayer J.S., Heath M.R., Arndt S. (2015) SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems. Geosci Model Dev 8(10), 3441-3470. (doi:10.5194/gmd-8-3441-2015).

Impact of Tile Drainage on the Distribution of Concentration and Age of Inorganic Soil Nitrogen.

NASA Astrophysics Data System (ADS)

Woo, D.; Kumar, P.

2017-12-01

Extensive network of tile drainage network across the Midwestern United States, northern Europe and other regions of the world have enhanced agricultural productivity. Because of its impact on sub-surface flow patterns and moisture and temperature dynamics, it controls the nitrogen cycle in agricultural systems, and its influence on nitrogen dynamics plays a key role in determining the short- and long-term evolution of soil inorganic nitrogen concentration and age. The spatial mapping of nitrogen concentration and age under tile-drained fields has, therefore, the potential to open up novel solution to the vexing challenge of reducing environmental impacts while at the same time maintaining agricultural productivity. The objective of this study is to explore the impacts of tile drains on the age dynamics of nitrate, immobile ammonium, mobile ammonia/um, and non-reactive tracer (such as chloride) by implementing two mobile interacting pore domains to capture matrix and preferential flow paths in a coupled ecohydrology and biogeochemistry model, Dhara. We applied this model to an agricultural farm supporting a corn-soybean rotation in the Midwestern United States. It should be expected that the installation of tile drains decrease the age of soil nutrient due to nutrient losses through tile drainage. However, an increase in the age of mobile ammonia/um is observed in contrast to the cases for nitrate, immobile ammonium, and non-reactive tracer. These results arise because the depletion of mobile ammonia/um due to tile drainage causes a high mobility flux from immobile ammonium to mobile ammonia/um, which also carries a considerable amount of relatively old age of immobile ammonium to mobile ammonia/um. In addition, the ages of nitrate and mobile ammonia/um in tile drainage range from 1 to 3 years, and less than a year, respectively, implying that not considering age transformations between nitrogen species would result in substantial underestimation of nitrogen ages, possibly leading to an erroneous conclusion.

Managing Nitrogen in the anthropocene: integrating social and ecological science

NASA Astrophysics Data System (ADS)

Zhang, X.; Mauzerall, D. L.; Davidson, E. A.; Kanter, D.; Cai, R.; Searchinger, T.

2014-12-01

Human alteration of the global nitrogen cycle by agricultural activities has provided nutritious food to society, but also poses increasing threats to human and ecosystem health through unintended pollution. Managing nitrogen more efficiently in crop production is critical for addressing both food security and environmental challenges. Technologies and management practices have been developed to increase the uptake of applied nitrogen by crops. However, nitrogen use efficiency (NUE, yield per unit nitrogen input) is also affected by social and economic factors. For example, to maximize profit, farmers may change crop choice or their nitrogen application rate, both of which lead to a change in NUE. To evaluate such impacts, we use both theoretical and empirical approaches on micro (farm) and macro (national) scales: 1) We developed a bio-economic model (NUE3) on a farm scale to investigate how market signals (e.g. fertilizer and crop prices), government policies, and nitrogen-efficient technologies affect NUE. We demonstrate that if factors that influence nitrogen inputs (e.g. fertilizer-to-crop price ratios) are not considered, NUE projections will be poorly constrained. The impact of nitrogen-efficient technologies on NUE not only depends on how technology changes the production function, but also relies on the prices of the technologies, fertilizers, and crops. 2) We constructed a database of the nitrogen budget in crop production for major crops and major crop producing countries from 1961 to 2010. Using this database, we investigate historical trends of NUE and its relationship to agronomic, economic, social, and policy factors. We find that NUE in most developed countries follows a "U-shape" relationship with income level, consistent with the Environmental Kuznets Curve theory. According to the dynamics revealed in the NUE3 model, we propose three major pathways by which economic development affects NUE, namely consumption, technology, and public policy. Overall, our research suggests that it is critical to include social and economic processes when studying perturbations of the global nitrogen cycle and crafting environmental and food security policy. Better collaboration across disciplines is essential to improve nitrogen management in the anthropocene.

Treated and untreated wastewater effluents alter river sediment bacterial communities involved in nitrogen and sulphur cycling.

PubMed

Martínez-Santos, Miren; Lanzén, Anders; Unda-Calvo, Jessica; Martín, Iker; Garbisu, Carlos; Ruiz-Romera, Estilita

2018-08-15

Studying the dynamics of nitrogen and sulphur cycling bacteria in river surface sediments is essential to better understand their contribution to global biogeochemical cycles. Evaporitic rocks settled at the headwater of the Deba River catchment (northern Spain) lead to high values of sulphate concentration in its waters. Besides, the discharge of effluents from untreated and treated residual (urban and industrial) wastewaters increases the concentration of metals, nutrients and organic compounds in its mid- and low-water courses. The aim of this study was to assess the impact of anthropogenic contamination from untreated and treated residual and industrial wastewaters on the structure and function of bacterial communities present in surface sediments of the Deba River catchment. The application of a quantitative functional approach (qPCR) based on denitrification genes (nir: nirS+nirK; and nosZ), together with a 16S rRNA gene metabarcoding structural analysis, revealed (i) the high relevance of the sulphur cycle at headwater surface sediments (as reflected by the abundance of members of the Syntrophobacterales order, and the Sulfuricurvum and Thiobacillus genera) and (ii) the predominance of sulphide-driven autotrophic denitrification over heterotrophic denitrification. Incomplete heterotrophic denitrification appeared to be predominant in surface sediments strongly impacted by treated and untreated effluents, as reflected by the lower values of the nosZ/nir ratio, thus favouring N 2 O emissions. Understanding nitrogen and sulphur cycling pathways has profound implications for the management of river ecosystems, since this knowledge can help us determine whether a specific river is acting or not as a source of greenhouse gases (i.e., N 2 O). Copyright © 2018 Elsevier B.V. All rights reserved.

Metagenomic assessment of the potential microbial nitrogen pathways in the rhizosphere of a mediterranean forest after a wildfire.

PubMed

Cobo-Díaz, José F; Fernández-González, Antonio J; Villadas, Pablo J; Robles, Ana B; Toro, Nicolás; Fernández-López, Manuel

2015-05-01

Wildfires are frequent in the forests of the Mediterranean Basin and have greatly influenced this ecosystem. Changes to the physical and chemical properties of the soil, due to fire and post-fire conditions, result in alterations of both the bacterial communities and the nitrogen cycle. We explored the effects of a holm oak forest wildfire on the rhizospheric bacterial communities involved in the nitrogen cycle. Metagenomic data of the genes involved in the nitrogen cycle showed that both the undisturbed and burned rhizospheres had a conservative nitrogen cycle with a larger number of sequences related to the nitrogen incorporation pathways and a lower number for nitrogen output. However, the burned rhizosphere showed a statistically significant increase in the number of sequences for nitrogen incorporation (allantoin utilization and nitrogen fixation) and a significantly lower number of sequences for denitrification and dissimilatory nitrite reductase subsystems, possibly in order to compensate for nitrogen loss from the soil after burning. The genetic potential for nitrogen incorporation into the ecosystem was assessed through the diversity of the nitrogenase reductase enzyme, which is encoded by the nifH gene. We found that nifH gene diversity and richness were lower in burned than in undisturbed rhizospheric soils. The structure of the bacterial communities involved in the nitrogen cycle showed a statistically significant increase of Actinobacteria and Firmicutes phyla after the wildfire. Both approaches showed the important role of gram-positive bacteria in the ecosystem after a wildfire.

Predicting dynamic metabolic demands in the photosynthetic eukaryote Chlorella vulgaris

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zuniga, Cristal; Levering, Jennifer; Antoniewicz, Maciek R.

Phototrophic organisms exhibit a highly dynamic proteome, adapting their biomass composition in response to diurnal light/dark cycles and nutrient availability. We used experimentally determined biomass compositions over the course of growth to determine and constrain the biomass objective function (BOF) in a genome-scale metabolic model of Chlorella vulgaris UTEX 395 over time. Changes in the BOF, which encompasses all metabolites necessary to produce biomass, influence the state of the metabolic network thus directly affecting predictions. Simulations using dynamic BOFs predicted distinct proteome demands during heterotrophic or photoautotrophic growth. Model-driven analysis of extracellular nitrogen concentrations and predicted nitrogen uptake rates revealedmore » an intracellular nitrogen pool, which contains 38% of the total nitrogen provided in the medium for photoautotrophic and 13% for heterotrophic growth. Agreement between flux and gene expression trends was determined by statistical comparison. Accordance between predicted fluxes trends and gene expression trends was found for 65% of multi-subunit enzymes and 75% of allosteric reactions. Reactions with the highest agreement between simulations and experimental data were associated with energy metabolism, terpenoid biosynthesis, fatty acids, nucleotides, and amino acids metabolism. Moreover, predicted flux distributions at each time point were compared with gene expression data to gain new insights into intracellular compartmentalization, specifically for transporters. A total of 103 genes related to internal transport reactions were identified and added to the updated model of C. vulgaris, iCZ946, thus increasing our knowledgebase by 10% for this model green alga.« less

Predicting dynamic metabolic demands in the photosynthetic eukaryote Chlorella vulgaris

DOE PAGES

Zuniga, Cristal; Levering, Jennifer; Antoniewicz, Maciek R.; ...

2017-09-26

Phototrophic organisms exhibit a highly dynamic proteome, adapting their biomass composition in response to diurnal light/dark cycles and nutrient availability. We used experimentally determined biomass compositions over the course of growth to determine and constrain the biomass objective function (BOF) in a genome-scale metabolic model of Chlorella vulgaris UTEX 395 over time. Changes in the BOF, which encompasses all metabolites necessary to produce biomass, influence the state of the metabolic network thus directly affecting predictions. Simulations using dynamic BOFs predicted distinct proteome demands during heterotrophic or photoautotrophic growth. Model-driven analysis of extracellular nitrogen concentrations and predicted nitrogen uptake rates revealedmore » an intracellular nitrogen pool, which contains 38% of the total nitrogen provided in the medium for photoautotrophic and 13% for heterotrophic growth. Agreement between flux and gene expression trends was determined by statistical comparison. Accordance between predicted fluxes trends and gene expression trends was found for 65% of multi-subunit enzymes and 75% of allosteric reactions. Reactions with the highest agreement between simulations and experimental data were associated with energy metabolism, terpenoid biosynthesis, fatty acids, nucleotides, and amino acids metabolism. Moreover, predicted flux distributions at each time point were compared with gene expression data to gain new insights into intracellular compartmentalization, specifically for transporters. A total of 103 genes related to internal transport reactions were identified and added to the updated model of C. vulgaris, iCZ946, thus increasing our knowledgebase by 10% for this model green alga.« less

Chapter 10 - Wildfire and fire severity effects on post-fire carbon and nitrogen cycling in forest soil (Project NC-EM-F-14-1)

Treesearch

Jessica R. Miesel; Randy Kolka; Phil Townsend

2018-01-01

Fire is a key ecological driver in determining vegetation composition, biomass, and ecosystem dynamics in coniferous forests of the Laurentian Mixed Forest in the Great Lakes region (Cleland and others 2004, Frelich 1995). Regional projections of future climate conditions indicate warmer temperatures, more variable precipitation patterns, and greater moisture stress (...

Low historical nitrogen deposition effect on carbon sequestration in the boreal zone

NASA Astrophysics Data System (ADS)

Fleischer, K.; Wârlind, D.; van der Molen, M. K.; Rebel, K. T.; Arneth, A.; Erisman, J. W.; Wassen, M. J.; Smith, B.; Gough, C. M.; Margolis, H. A.; Cescatti, A.; Montagnani, L.; Arain, A.; Dolman, A. J.

2015-12-01

Nitrogen (N) cycle dynamics and N deposition play an important role in determining the terrestrial biosphere's carbon (C) balance. We assess global and biome-specific N deposition effects on C sequestration rates with the dynamic global vegetation model LPJ-GUESS. Modeled CN interactions are evaluated by comparing predictions of the C and CN version of the model with direct observations of C fluxes from 68 forest FLUXNET sites. N limitation on C uptake reduced overestimation of gross primary productivity for boreal evergreen needleleaf forests from 56% to 18%, presenting the greatest improvement among forest types. Relative N deposition effects on C sequestration (dC/dN) in boreal, temperate, and tropical sites ranged from 17 to 26 kg C kg N-1 when modeled at site scale and were reduced to 12-22 kg C kg N-1 at global scale. We find that 19% of the recent (1990-2007) and 24% of the historical global C sink (1900-2006) was driven by N deposition effects. While boreal forests exhibit highest dC/dN, their N deposition-induced C sink was relatively low and is suspected to stay low in the future as no major changes in N deposition rates are expected in the boreal zone. N deposition induced a greater C sink in temperate and tropical forests, while predicted C fluxes and N-induced C sink response in tropical forests were associated with greatest uncertainties. Future work should be directed at improving the ability of LPJ-GUESS and other process-based ecosystem models to reproduce C cycle dynamics in the tropics, facilitated by more benchmarking data sets. Furthermore, efforts should aim to improve understanding and model representations of N availability (e.g., N fixation and organic N uptake), N limitation, P cycle dynamics, and effects of anthropogenic land use and land cover changes.

Gaseous Nitrogen Losses from Tropical Savanna Soils of Northern Australia: Dynamics, Controls and Magnitude of N2O, NO, and N2 emissions

NASA Astrophysics Data System (ADS)

Werner, C.; Hickler, T.; Hutley, L. B.; Butterbach-Bahl, K.

2014-12-01

Tropical savanna covers a large fraction of the global land area and thus may have a substantial effect on the global soil-atmosphere exchange of nitrogen. The pronounced seasonality of hygric conditions in this ecosystem affects strongly microbial process rates in the soil. As these microbial processes control the uptake, production, and release of nitrogen compounds, it is thought that this seasonality finally leads to strong temporal dynamics and varying magnitudes of gaseous losses to the atmosphere. However, given their areal extent and in contrast to other ecosystems, still few in-situ or laboratory studies exist that assess the soil-atmosphere exchange of nitrogen. We present laboratory incubation results from intact soil cores obtained from a natural savanna site in Northern Australia, where N2O, NO, and N2 emissions under controlled environmental conditions were investigated. Furthermore, in-situ measurements of high temporal resolution at this site recorded with automated static and dynamic chamber systems are discussed (N2O, NO). This data is then used to assess the performance of a process-based biogeochemical model (LandscapeDNDC), and the potential magnitude and dynamics of components of the site-scale nitrogen cycle where no measurements exist (biological nitrogen fixation and nitrate leaching). Our incubation results show that severe nutrient limitation of the soil only allows for very low N2O emissions (0.12 kg N ha-1 yr-1) and even a periodic N2O uptake. Annual NO emissions were estimated at 0.68 kg N ha-1 yr-1, while the release of inert nitrogen (N2) was estimated at 6.75 kg N ha-1 yr-1 (data excl. contribution by pulse emissions). We observed only minor N2O pulse emissions after watering the soil cores and initial rain events of the dry to wet season transition in-situ, but short-lived NO pulse emissions were substantial. Interestingly, some cores exhibited a very different N2O emission potential, indicating a substantial spatial variability of potential N release. For most soil moisture and temperature settings, N2 emissions dominated the release of gaseous nitrogen loss (82-99% of total gaseous N loss).

Role of model structure on the response of soil biogeochemistry to hydro-climatic fluctuations

NASA Astrophysics Data System (ADS)

Manzoni, S.; Porporato, A.

2005-05-01

Soil carbon and nutrient cycles are strongly affected by hydro-climatic variability, which interacts with the internal ecosystem structure. Here we test the implications of biogeochemical model structure on such dynamics by extending an existing model by the authors and coworkers. When forced by hydro-climatic fluctuations, the different model structures induce specific preferential nutrient paths among the soil pools, which in turn affect nutrient distribution and availability to microbes and plants. In particular, if it is assumed that microbes can directly assimilate organic nitrogen, plants tend to be inferior competitors for nutrients even in well-watered conditions, while if a certain amount of organic nitrogen is assumed to be mineralized without being first incorporated into microbial cells, vegetation can be advantaged over a wide range of soil moisture values. We also investigate the intensification of competition for nutrients (e.g., nitrogen) between plant and soil microbial communities under extreme hydrologic conditions, such as droughts and intense storms. Frequent rainfall events may determine ideal soil moisture conditions for plant uptake, enhancing nitrogen leaching while lowering oxygen concentration and inhibiting microbial activity. During droughts, the soil water potential often drops to the point of hampering the plant nutrient uptake while still remaining high enough for microbial decomposition and nitrogen immobilization. The interplay of microbe and vegetation water stress is investigated in depth as it controls the ability of one community (e.g., plants or soil microbes) to establish competitive advantage on the other. The long-term effects of these dynamics of competition and nutrient allocation are explored under steady-state and stochastic soil moisture conditions to analyze the feedbacks between soil organic matter and vegetation dynamics.

Dissolved organic nitrogen dynamics in the North Sea: A time series analysis (1995-2005)

NASA Astrophysics Data System (ADS)

Van Engeland, T.; Soetaert, K.; Knuijt, A.; Laane, R. W. P. M.; Middelburg, J. J.

2010-09-01

Dissolved organic nitrogen (DON) dynamics in the North Sea was explored by means of long-term time series of nitrogen parameters from the Dutch national monitoring program. Generally, the data quality was good with little missing data points. Different imputation methods were used to verify the robustness of the patterns against these missing data. No long-term trends in DON concentrations were found over the sampling period (1995-2005). Inter-annual variability in the different time series showed both common and station-specific behavior. The stations could be divided into two regions, based on absolute concentrations and the dominant times scales of variability. Average DON concentrations were 11 μmol l -1 in the coastal region and 5 μmol l -1 in the open sea. Organic fractions of total dissolved nitrogen (TDN) averaged 38 and 71% in the coastal zone and open sea, respectively, but increased over time due to decreasing dissolved inorganic nitrogen (DIN) concentrations. In both regions intra-annual variability dominated over inter-annual variability, but DON variation in the open sea was markedly shifted towards shorter time scales relative to coastal stations. In the coastal zone a consistent seasonal DON cycle existed with high values in spring-summer and low values in autumn-winter. In the open sea seasonality was weak. A marked shift in the seasonality was found at the Dogger Bank, with DON accumulation towards summer and low values in winter prior to 1999, and accumulation in spring and decline throughout summer after 1999. This study clearly shows that DON is a dynamic actor in the North Sea and should be monitored systematically to enable us to understand fully the functioning of this ecosystem.

Key ecological responses to nitrogen are altered by climate change

EPA Science Inventory

Here we review the effects of nitrogen and climate (e.g. temperature and precipitation) on four aspects of ecosystem structure and function including hydrologic-coupled nitrogen cycling, carbon cycling, acidification and biodiversity.

Episodic inputs of atmospheric nitrogen to the Sargasso Sea: Contributions to new production and phytoplankton blooms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Michaels, A.F.; Johnson, R.J.; Siegel, D.A.

1993-06-01

This paper compares a recent atmospheric wet deposition record (including all measurable daily rainfall events between October 1988 and June 1991) with concurrent measurements of nitrogen cycling and biomass at the U.S. Joint Global Ocean Flux Study Bermuda Atlantic Time Series Study station. The two data sets, among the most complete synoptic records of atmospheric nitrogen deposition and ocean nitrogen cycling, provide an opportunity to directly assess the importance of nitrogen deposition in the ocean. The results indicate that individual nitrogen wet deposition events are usually small compared to the ambient nitrogen cycle and that only under sustained calm conditionsmore » following large deposition events will nitrogen deposition processes be an important signal for the understanding of ocean biochemistry. 46 refs., 7 figs.« less

Positive responses of belowground C dynamics to nitrogen enrichment in China.

PubMed

Deng, Lei; Peng, Changhui; Zhu, Guangyu; Chen, Lei; Liu, Yulin; Shangguan, Zhouping

2018-03-01

Determining how nitrogen (N) impacts ecosystem carbon (C) cycling is critical to using C sequestration to offset anthropogenic CO 2 emissions. The N deposition rate in China is higher than the global average; however, many results of N enrichment experiments in China have not been included in global syntheses. In this study, we assembled a large dataset that comprised 124 published studies concerning N addition experiments, including 570 observations at 127 sites across China, to quantify the responses of belowground C dynamics to N enrichment in terrestrial ecosystems in China by a meta-analysis. The results showed that overall soil organic C, dissolved organic C (DOC) and soil microbial biomass C (MBC) increased by 1.8, 7.4, and 8.8%, respectively (P<0.05), in response to N enrichment; belowground biomass and litter increased by 14.6 and 24.4%, respectively (P<0.05); and soil respiration increased by 6.1% (P<0.05). N enrichment promoted C inputs into the soil mainly by increasing litter and belowground biomass inputs. Additionally, N enrichment increased C output by increasing soil respiration. Land use type and N addition level had different impacts on the soil C pool and on soil respiration. DOC, MBC, and litter exhibited more positive responses to N deposition in cooler and more arid regions than in other regions. The meta-analysis indicated that N enrichment had a positive impact on belowground C cycles in China. Climate played a greater role than did N deposition level in affecting processes of ecosystem C cycling. Moreover, belowground C cycle processes are determined by complicated interactions among land use type, N enrichment, and climate. Copyright © 2017 Elsevier B.V. All rights reserved.

Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones.

PubMed

Cardenas, Erick; Orellana, Luis H; Konstantinidis, Konstantinos T; Mohn, William W

2018-02-16

Forest ecosystems are critical to global biogeochemical cycles but under pressure from harvesting and climate change. We investigated the effects of organic matter (OM) removal during forest harvesting on the genetic potential of soil communities for biomass decomposition and nitrogen cycling in five ecozones across North America. We analyzed 107 samples, representing four treatments with varied levels of OM removal, at Long-Term Soil Productivity Study sites. Samples were collected more than ten years after harvesting and replanting and were analyzed via shotgun metagenomics. High-quality short reads totaling 1.2 Tbp were compared to the Carbohydrate Active Enzyme (CAZy) database and a custom database of nitrogen cycle genes. Gene profile variation was mostly explained by ecozone and soil layer. Eleven CAZy and nine nitrogen cycle gene families were associated with particular soil layers across all ecozones. Treatment effects on gene profiles were mainly due to harvesting, and only rarely to the extent of OM removal. Harvesting generally decreased the relative abundance of CAZy genes while increasing that of nitrogen cycle genes, although these effects varied among ecozones. Our results suggest that ecozone-specific nutrient availability modulates the sensitivity of the carbon and nitrogen cycles to harvesting with possible consequences for long-term forest sustainability.

Post-Fire Spatial Patterns of Soil Nitrogen Mineralization and Microbial Abundance

PubMed Central

Smithwick, Erica A. H.; Naithani, Kusum J.; Balser, Teri C.; Romme, William H.; Turner, Monica G.

2012-01-01

Stand-replacing fires influence soil nitrogen availability and microbial community composition, which may in turn mediate post-fire successional dynamics and nutrient cycling. However, fires create patchiness at both local and landscape scales and do not result in consistent patterns of ecological dynamics. The objectives of this study were to (1) quantify the spatial structure of microbial communities in forest stands recently affected by stand-replacing fire and (2) determine whether microbial variables aid predictions of in situ net nitrogen mineralization rates in recently burned stands. The study was conducted in lodgepole pine (Pinus contorta var. latifolia) and Engelmann spruce/subalpine fir (Picea engelmannii/Abies lasiocarpa) forest stands that burned during summer 2000 in Greater Yellowstone (Wyoming, USA). Using a fully probabilistic spatial process model and Bayesian kriging, the spatial structure of microbial lipid abundance and fungi-to-bacteria ratios were found to be spatially structured within plots two years following fire (for most plots, autocorrelation range varied from 1.5 to 10.5 m). Congruence of spatial patterns among microbial variables, in situ net N mineralization, and cover variables was evident. Stepwise regression resulted in significant models of in situ net N mineralization and included variables describing fungal and bacterial abundance, although explained variance was low (R2<0.29). Unraveling complex spatial patterns of nutrient cycling and the biotic factors that regulate it remains challenging but is critical for explaining post-fire ecosystem function, especially in Greater Yellowstone, which is projected to experience increased fire frequencies by mid 21st Century. PMID:23226324

Modeling the Dynamics and Export of Dissolved Organic Matter in the Northeastern U.S. Continental Shelf

NASA Technical Reports Server (NTRS)

Druon, J.N.; Mannino, A.; Signorini, Sergio R.; McClain, Charles R.; Friedrichs, M.; Wilkin, J.; Fennel, K.

2009-01-01

Continental shelves are believed to play a major role in carbon cycling due to their high productivity. Particulate organic carbon (POC) burial has been included in models as a carbon sink, but we show here that seasonally produced dissolved organic carbon (DOC) on the shelf can be exported to the open ocean by horizontal transport at similar rates (1-2 mol C/sq m/yr) in the southern U.S. Mid-Atlantic Bight (MAB). The dissolved organic matter (DOM) model imbedded in a coupled circulation-biogeochemical model reveals a double dynamics: the progressive release of dissolved organic nitrogen (DON) in the upper layer during summer increases the regenerated primary production by 30 to 300%, which, in turns ; enhances the DOC production mainly from phytoplankton exudation in the upper layer and solubilization of particulate organic matter (POM) deeper in the water column. This analysis suggests that DOM is a key element for better representing the ecosystem functioning and organic fluxes in models because DOM (1) is a major organic pool directly related to primary production, (2) decouples partially the carbon and nitrogen cycles (through carbon excess uptake, POM solubilization and DOM mineralization) and (3) is intimately linked to the residence time of water masses for its distribution and export.

The Nitrogen Cycle Before the Rise of Oxygen

NASA Astrophysics Data System (ADS)

Ward, L. M.; Hemp, J.; Fischer, W. W.

2016-12-01

The nitrogen cycle on Earth today is driven by a complex network of microbially-mediated transformations. Atmospheric N2 is fixed into biologically available forms that can either be incorporated into biomass or utilized for bioenergetic redox reactions. The cycle is kept in balance by the return of fixed nitrogen to the atmospheric N2 pool by anammox and denitrification. The early evolution and history of the nitrogen cycle is not well resolved, particularly before the evolution of oxygenic photosynthesis and rise of atmospheric oxygen ca. 2.3 Gya. Ammonia oxidation is a biochemically difficult reaction requiring activation of ammonia using O2 or oxidized nitrogen species that are produced using O2. Before the rise of oxygen, when O2 was largely unavailable, nitrification could not proceed, trapping fixed nitrogen in reduced forms such as ammonia and biomass. Without production of nitrite and nitrate, anammox and denitrification could not occur, preventing return of fixed nitrogen to the N2 pool and leaving the nitrogen cycle unclosed. While it has been hypothesized that ammonia oxidation could be driven anaerobically by processes such as phototrophy or iron reduction, these metabolisms have not been recovered in extant microorganisms, and would require complex unknown biochemical mechanisms. Furthermore, phylogenetic data for the key organisms and biochemical pathways involved in denitrification and anammox suggest that these metabolisms postdate the rise of oxygen. This is particularly clear for steps utilizing enzymes in the Heme-Copper Oxidoreductase superfamily, which appear to have originally evolved for O2 reduction at non-negligible substrate concentrations. Together, this suggests that the Archean nitrogen cycle was not closed, and that nitrogen fixed to reduced forms—either through biological nitrogen fixation or abiotic processes—was not easily returned to the atmospheric N2 pool. In principle, this could have stripped the atmosphere of N2 over timescales of hundreds of Myr, which is consistent with recent paleopressure estimates that suggest < 0.5 bar by late Archean time. The modern, N2-rich atmosphere and (largely) closed biological nitrogen cycle may therefore not have evolved until Proterozoic time, after the rise of oxygen.

15N indicates an active N-cycling microbial community in low carbon, freshwater sediments.

NASA Astrophysics Data System (ADS)

Sheik, C.

2017-12-01

Earth's large lakes are unique aquatic ecosystems, but we know little of the microbial life driving sedimentary biogeochemical cycles and ultimately the isotopic record. In several of these large lakes, water column productivity is constrained by element limitation, such as phosphorus and iron, creating oligotrophic water column conditions that drive low organic matter content in sediments. Yet, these sediments are biogeochemically active and have been shown to have oxygen consumption rates akin to pelagic ocean sediments and complex sulfur cycling dynamics. Thus, large oligotrophic lakes provide unique and interesting biogeochemical contrast to highly productive freshwater and coastal marine systems. Using Lake Superior as our study site, we found microbial community structure followed patterns in bulk sediment carbon and nitrogen concentrations. These observed patterns were loosely driven by land proximity, as some stations are more coastal and have higher rates of sedimentation, allochthonous carbon inputs and productivity than pelagic sites. Interestingly, upper sediment carbon and nitrogen stable isotopes were quite different from water column. Sediment carbon and nitrogen isotopes correlated significantly with microbial community structure. However, 15N showed much stronger correlation than 13C, and became heavier with core depth. Coinciding with the increase in 15N values, we see evidence of both denitrification and anammox processes in 16S rRNA gene libraries and metagenome assembled genomes. Given that microorganisms prefer light isotopes and that these N-cycling processes both contribute to N2 production and efflux from the sediment, the increase in 15N with sediment depth suggests microbial turnover. Abundance of these genomes also varies with depth suggesting these novel microorganisms are partitioning into specific sediment geochemical zones. Additionally, several of these genomes contain genes involved in sulphur cycling, suggesting a dual biogeochemical role and potential for a cryptic sulfur cycle. Together, Lake Superior sediments offer a glimpse into microbial metabolism in carbon limited environments. Further the pervasiveness of co-metabolic pathways suggests interpretation of isotopic records may be messier than previously thought.

Climate Change, Soils, and Human Health

NASA Astrophysics Data System (ADS)

Brevik, Eric C.

2013-04-01

According to the Intergovernmental Panel on Climate Change, global temperatures are expected to increase 1.1 to 6.4 degrees C during the 21st century and precipitation patterns will be altered by climate change (IPCC, 2007). Soils are intricately linked to the atmospheric/climate system through the carbon, nitrogen, and hydrologic cycles. Altered climate will, therefore, have an effect on soil processes and properties. Studies into the effects of climate change on soil processes and properties are still incomplete, but have revealed that climate change will impact soil organic matter dynamics including soil organisms and the multiple soil properties that are tied to organic matter, soil water, and soil erosion. The exact direction and magnitude of those impacts will be dependent on the amount of change in atmospheric gases, temperature, and precipitation amounts and patterns. Recent studies give reason to believe at least some soils may become net sources of atmospheric carbon as temperatures rise; this is particularly true of high latitude regions with permanently frozen soils. Soil erosion by both wind and water is also likely to increase. These soil changes will lead to both direct and indirect impacts on human health. Possible indirect impacts include temperature extremes, food safety and air quality issues, increased and/or expanded disease incidences, and occupational health issues. Potential direct impacts include decreased food security and increased atmospheric dust levels. However, there are still many things we need to know more about. How climate change will affect the nitrogen cycle and, in turn, how the nitrogen cycle will affect carbon sequestration in soils is a major research need, as is a better understanding of soil water-CO2 level-temperature relationships. Knowledge of the response of plants to elevated atmospheric CO2 given limitations in nutrients like nitrogen and phosphorus and how that affects soil organic matter dynamics is a critical need. There is also a great need for a better understanding of how soil organisms will respond to climate change because those organisms are incredibly important in a number of soil processes, including the carbon and nitrogen cycles. All of these questions are important in trying to understand human health impacts. More information on climate change, soils, and human health issues can be found in Brevik (2012). References Brevik, E.C. 2012. Climate change, soils, and human health. In: E.C. Brevik and L. Burgess (Eds). Soils and human health. CRC Press, Boca Raton, FL. in press. IPCC. 2007. Summary for policymakers. pp. 1-18. In S. Solomon, D. Qin, M. Manning, Z. Chen, M. Marquis, K.B. Averyt, M.Tignor and H.L. Miller (eds). Climate change 2007: the physical science basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, UK.

Full-size solar dynamic heat receiver thermal-vacuum tests

NASA Technical Reports Server (NTRS)

Sedgwick, L. M.; Kaufmann, K. J.; Mclallin, K. L.; Kerslake, Thomas W.

1991-01-01

The testing of a full-size, 120 kW, solar dynamic heat receiver utilizing high-temperature thermal energy storage is described. The purpose of the test program was to quantify receiver thermodynamic performance, operating temperatures, and thermal response to changes in environmental and power module interface boundary conditions. The heat receiver was tested in a vacuum chamber with liquid nitrogen cold shrouds and an aperture cold plate to partly simulate a low-Earth-orbit environment. The cavity of the receiver was heated by an infrared quartz lamp heater with 30 independently controllable zones to allow axially and circumferentially varied flux distributions. A closed-Brayton cycle engine simulator conditioned a helium-xenon gas mixture to specific interface conditions to simulate the various operational modes of the solar dynamic power module on the Space Station Freedom. Inlet gas temperature, pressure, and flow rate were independently varied. A total of 58 simulated orbital cycles, each 94 minutes in duration, was completed during the test conduct period.

Full-size solar dynamic heat receiver thermal-vacuum tests

NASA Technical Reports Server (NTRS)

Sedgwick, L. M.; Kaufmann, K. J.; Mclallin, K. L.; Kerslake, T. W.

1991-01-01

The testing of a full-size, 102 kW, solar dynamic heat receiver utilizing high-temperature thermal energy storage is described. The purpose of the test program was to quantify receiver thermodynamic performance, operating temperatures, and thermal response to changes in environmental and power module interface boundary conditions. The heat receiver was tested in a vacuum chamber with liquid nitrogen cold shrouds and an aperture cold plate to partly simulate a low-Earth-orbit environment. The cavity of the receiver was heated by an infrared quartz lamp heater with 30 independently controllable zones to allow axially and circumferentially varied flux distributions. A closed-Brayton cycle engine simulator conditioned a helium-xenon gas mixture to specific interface conditions to simulate the various operational modes of the solar dynamic power module on the Space Station Freedom. Inlet gas temperature, pressure, and flow rate were independently varied. A total of 58 simulated orbital cycles, each 94 minutes in duration, was completed during the test period.

Full-size solar dynamic heat receiver thermal-vacuum tests

NASA Astrophysics Data System (ADS)

Sedgwick, L. M.; Kaufmann, K. J.; McLallin, K. L.; Kerslake, T. W.

The testing of a full-size, 102 kW, solar dynamic heat receiver utilizing high-temperature thermal energy storage is described. The purpose of the test program was to quantify receiver thermodynamic performance, operating temperatures, and thermal response to changes in environmental and power module interface boundary conditions. The heat receiver was tested in a vacuum chamber with liquid nitrogen cold shrouds and an aperture cold plate to partly simulate a low-Earth-orbit environment. The cavity of the receiver was heated by an infrared quartz lamp heater with 30 independently controllable zones to allow axially and circumferentially varied flux distributions. A closed-Brayton cycle engine simulator conditioned a helium-xenon gas mixture to specific interface conditions to simulate the various operational modes of the solar dynamic power module on the Space Station Freedom. Inlet gas temperature, pressure, and flow rate were independently varied. A total of 58 simulated orbital cycles, each 94 minutes in duration, was completed during the test period.

Nitrogen cycling following The Great Oxidation Event, evidence from the Paleoproterozoic of Fennoscandia.

NASA Astrophysics Data System (ADS)

Junium, C. K.; Kump, L.; Arthur, M. A.; Melezhik, V.; Lepland, A.; Members of the FAR-DEEP Drilling Team

2011-12-01

The Fennoscandia Arctic Russia - Drilling Early Earth Project (FAR-DEEP) recovered core materials spanning the early Paleoproterozoic of Arctic Russia under the auspices of the International Continental Scientific Drilling Program. Here we present N and C isotopic data documenting N and C cycle dynamics during this critical interval of Earth history. Additionally, we will discuss the challenges of nitrogen isotope studies in such ancient sediments and the methods that we have utilized to test the fidelity of our nitrogen isotope data. Nitrogen isotope studies in very ancient sedimentary rocks, like those recovered by the FAR-DEEP are plagued by the concerns of diagenetic and metamorphic overprinting. Nitrogen is often present in very low concentrations and in a variety of inorganic phases that may or may not be derived from the ambient organic matter. For these reasons, bulk sediment δ15N data can be at best, ambiguous. To overcome these issues we have utilized kerogens for δ15N and δ13C analyses. The large difference between bulk and kerogen δ15N data demonstrates that inorganic N is anomalously 15N-enriched, by up to 7% and bulk δ15N values substantially overestimate the magnitude of the 15N variability in the Onega Basin (OB) sediments. Metasomatic processes during basinal magamatic activity resulted in the addition of 15N-enriched inorganic-N. Authigenic K-bearing micas are common in intervals where bulk δ15N values are 15N-enriched, suggesting that secondary mineral phases have retained 15N-enriched ammonia generated during metsomatism. The FAR-DEEP drilling team has documented an anomalously large, and rapid δ13C shift of -17% in carbonates and organic matter of the Zhaoneskaya Formation (ZF) of the OB following the extended period of 13Ccarb-enrichment know as the Lomagundi-Jatuli event. The isotopic shift in reduced carbon has also been recognized in the Franceville Formation of Gabon, termed here as "Shunga-Francevillian" anomaly, and may reflect the global oxidation of organic matter buried during the buildup of atmospheric oxygen in response to Lomagundi-Jatuli carbon burial. The dynamic response of the nitrogen cycle in the ZF is consistent with increased availability of O2 in the water column and is similar to the response documented in Archean sequences. Kerogen δ15N values are below 2%, most likely reflecting a biological N2-fixation source for nutrient-nitrogen with little influence from denitrification. δ13C values increase from -26% to -19% signaling a transient increase in the burial of organic carbon and net production of O2. Transition from a largely anoxic OB water column to one that was oxidized in its surface waters would have allowed for redox cycling of nitrogen and accompanying 15N-enrichment. Thus, the observed δ15N increase of 5% reflects an expansion in denitrification and associated reactions and oxidation of the OB water column under elevated atmospheric O2. At the end of the precipitous decrease in δ13C values δ15N values return pre-excursion values of ~+2%. This drop in δ13C and δ15N suggests a return to less oxidizing conditions in the OB following drawdown of atmospheric O2 during organic matter oxidation.

Global terrestrial carbon and nitrogen cycling insensitive to estimates of biological N fixation

NASA Astrophysics Data System (ADS)

Steinkamp, J.; Weber, B.; Werner, C.; Hickler, T.

2015-12-01

Dinitrogen (N2) is the most abundant molecule in the atmosphere and incorporated in other molecules an essential nutrient for life on earth. However, only few natural processes can initiate a reaction of N2. These natural processes are fire, lightning and biological nitrogen fixation (BNF) with BNF being the largest source. In the course of the last century humans have outperformed the natural processes of nitrogen fixation by the production of fertilizer. Industrial and other human emission of reactive nitrogen, as well as fire and lightning lead to a deposition of 63 Tg (N) per year. This is twice the amount of BNF estimated by the default setup of the dynamic global vegetation model LPJ-GUESS (30 Tg), which is a conservative approach. We use different methods and parameterizations for BNF in LPJ-GUESS: 1.) varying total annual amount; 2.) annual evenly distributed and daily calculated fixation rates; 3.) an improved dataset of BNF by cryptogamic covers (free-living N-fixers). With this setup BNF is ranging from 30 Tg to 60 Tg. We assess the impact of BNF on carbon storage and grand primary production (GPP) of the natural vegetation. These results are compared to and evaluated against available independent datasets. We do not see major differences in the productivity and carbon stocks with these BNF estimates, suggesting that natural vegetation is insensitive to BNF on a global scale and the vegetation can compensate for the different nitrogen availabilities. Current deposition of nitrogen compounds and internal cycling through mineralization and uptake is sufficient for natural vegetation productivity. However, due to the coarse model grid and spatial heterogeneity in the real world this conclusion does not exclude the existence of habitats constrained by BNF.

Interdisciplinary research in global biogeochemical cycling Nitrous oxide in terrestrial ecosystems

NASA Technical Reports Server (NTRS)

Norman, S. D.; Peterson, D. L.

1984-01-01

NASA has begun an interdisciplinary research program to investigate various aspects of Global Biology and Global Habitability. An important element selected for the study of global phenomena is related to biogeochemical cycling. The studies involve a collaboration with recognized scientists in the areas of plant physiology, microbiology, nutrient cycling theory, and related areas. Selected subjects of study include nitrogen cycling dynamics in terrestrial ecosystems with special attention to biosphere/atmosphere interactions, and an identification of sensitive response variables which can be used in ecosystem models based on parameters derived from remotely sensed variables. A description is provided of the progress and findings over the past two years. Attention is given to the characteristics of nitrous oxide emissions, the approach followed in the investigations, the selection of study sites, radiometric measurements, and research in Sequoia.

System dynamics modeling of nitrogen removal in a stormwater infiltration basin with biosorption-activated media.

PubMed

Xuan, Zhemin; Chang, Ni-Bin; Wanielista, Martin P; Williams, Evan Shane

2013-07-01

Stormwater infiltration basins, one of the typical stormwater best management practices, are commonly constructed for surface water pollution control, flood mitigation, and groundwater restoration in rural or residential areas. These basins have soils with better infiltration capacity than the native soil; however, the ever-increasing contribution of nutrients to groundwater from stormwater due to urban expansion makes existing infiltration basins unable to meet groundwater quality criteria related to environmental sustainability and public health. This issue requires retrofitting current infiltration basins for flood control as well as nutrient control before the stormwater enters the groundwater. An existing stormwater infiltration basin in north-central Florida was selected, retrofitted, and monitored to identify subsurface physiochemical and biological processes during 2007-2010 to investigate nutrient control processes. This implementation in the nexus of contaminant hydrology and ecological engineering adopted amended soil layers packed with biosorption activated media (BAM; tire crumb, silt, clay, and sand) to perform nutrient removal in a partitioned forebay using a berm. This study presents an infiltration basin-nitrogen removal (IBNR) model, a system dynamics model that simulates nitrogen cycling in this BAM-based stormwater infiltration basin with respect to changing hydrologic conditions and varying dissolved nitrogen concentrations. Modeling outputs of IBNR indicate that denitrification is the biogeochemical indicator in the BAM layer that accounted for a loss of about one third of the total dissolved nitrogen mass input. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Human and riverine impacts on the dynamics of biogeochemical parameters in Kwangyang Bay, South Korea revealed by time-series data and multivariate statistics.

PubMed

Kim, Tae-Wook; Kim, Dongseon; Baek, Seung Ho; Kim, Young Ok

2015-01-15

The successful management of sustainable coastal environments that are beneficial to both humans and marine ecosystems requires knowledge about factors that are harmful to such environments. Here, we investigated seawater nutrient and carbon parameters between 2010 and 2012 in Kwangyang Bay, Korea, a coastal environment that has been exposed to intensive anthropogenic activities. The data were analyzed using cluster and factor analysis. We found that the biogeochemical cycles of nutrients and carbon were determined by river discharge into the bay and biological activity. However, the impacts of these factors varied both spatially and seasonally. During the past 10 years, nutrient loads from the river and industrial complexes to the bay have decreased. The impacts of this decrease are visible in the phosphate concentration, which has fallen to a third of its initial value. We also examined the potential role of atmospheric nitrogen deposition in nitrogen cycling in the study area. Copyright © 2014 Elsevier Ltd. All rights reserved.

Global changes in biogeochemical cycles in response to human activities

NASA Technical Reports Server (NTRS)

Moore, Berrien, III; Melillo, Jerry

1994-01-01

The main objective of our research was to characterize biogeochemical cycles at continental and global scales in both terrestrial and aquatic ecosystems. This characterization applied to both natural ecosystems and those disturbed by human activity. The primary elements of interest were carbon and nitrogen and the analysis sought to quantify standing stocks and dynamic cycling processes. The translocation of major nutrients from the terrestrial landscape to the atmosphere (via trace gases) and to fluvial systems (via leaching, erosional losses, and point source pollution) were of particular importance to this study. Our aim was to develop the first generation of Earth System Models. Our research was organized around the construction and testing of component biogeochemical models which treated terrestrial ecosystem processes, aquatic nutrient transport through drainage basins, and trace gas exchanges at the continental and global scale. A suite of three complementary models were defined within this construct. The models were organized to operate at a 1/2 degree latitude by longitude level of spatial resolution and to execute at a monthly time step. This discretization afforded us the opportunity to understand the dynamics of the biosphere down to subregional scales, while simultaneously placing these dynamics into a global context.

Difference of nitrogen-cycling microbes between shallow bay and deep-sea sediments in the South China Sea.

PubMed

Yu, Tiantian; Li, Meng; Niu, Mingyang; Fan, Xibei; Liang, Wenyue; Wang, Fengping

2018-01-01

In marine sediments, microorganisms are known to play important roles in nitrogen cycling; however, the composition and quantity of microbes taking part in each process of nitrogen cycling are currently unclear. In this study, two different types of marine sediment samples (shallow bay and deep-sea sediments) in the South China Sea (SCS) were selected to investigate the microbial community involved in nitrogen cycling. The abundance and composition of prokaryotes and seven key functional genes involved in five processes of the nitrogen cycle [nitrogen fixation, nitrification, denitrification, dissimilatory nitrate reduction to ammonium (DNRA), and anaerobic ammonia oxidation (anammox)] were presented. The results showed that a higher abundance of denitrifiers was detected in shallow bay sediments, while a higher abundance of microbes involved in ammonia oxidation, anammox, and DNRA was found in the deep-sea sediments. Moreover, phylogenetic differentiation of bacterial amoA, nirS, nosZ, and nrfA sequences between the two types of sediments was also presented, suggesting environmental selection of microbes with the same geochemical functions but varying physiological properties.

Fire Frequency and Vegetation Composition Influence Soil Nitrogen Cycling and Base Cations in an Oak Savanna Ecosystem

NASA Astrophysics Data System (ADS)

McLauchlan, K. K.; Nelson, D. M.; Perakis, S.; Marcotte, A. L.

2017-12-01

Fire frequency is crucial for maintaining savannas in the transition between forests and grasslands. In general, increasing fire frequency has two effects: it increases herbaceous plant cover more than woody plant cover, and it lowers soil organic matter stocks. These effects have been demonstrated at a long-term prescribed fire experiment in an oak savanna ecosystem at Cedar Creek Ecosystem Science Reserve, Minnesota, U.S.A. The fire experiment began in 1964 and oak savannas are burned at various frequencies ranging from every year to not at all. This has led to changes in vegetation ranging from almost 100% grassland to 100% oak forest. Additionally, nitrogen stocks almost doubled in the sites that were not burned, as it accumulated in the trees, leaf litter, and soil. We addressed additional soil changes taking place at this experiment by asking the question: How have fire and oak-grass balance affected soil nutrients, specifically nitrogen and base cations? Surface soils were collected from 12 plots on the oak savanna burn experiment. Soils were collected in increments to 100 cm depth, from under grass-dominated vegetation and from under tree-dominated vegetation. We non-destructively estimated soil base cations by measuring elemental concentrations of dried soil subsamples with a handheld x-ray fluorescence analyzer. We also measured carbon and nitrogen concentrations and isotopic composition of the soil samples. Soils in plots with high fire frequency had higher concentrations of calcium than soils in unburned plots (low fire frequency). Similar trends were seen for soil potassium, magnesium, and phosphorus concentrations. In contrast, soils in plots with high fire frequency had dramatically lowered nitrogen cycling rates and stocks across the oak savanna. The contrast between the responses of different nutrients to changing fire frequency has important implications for the consequences of fire and tree-grass composition on nutrient cycling dynamics.

[Nitrogen and water cycling of typical cropland in the North China Plain].

PubMed

Pei, Hong-wei; Shen, Yan-jun; Liu, Chang-ming

2015-01-01

Intensive fertilization and irrigation associated increasing grain production has led to serious groundwater depletion and soil/water pollution in the North China Plain (NCP). Intensive agriculture changes the initial mass and energy balance, and also results in huge risks to the water/soil resources and food security regionally. Based on the research reports on the nitrogen cycle and water cycle in typical cropland (winter wheat and summer corn) in the NCP during the past 20 years, and the meteorological data, field experiments and surveys, we calculated the nitrogen cycle and water-cycle for this typical cropland. Annual total nitrogen input were 632 kg N . hm-2, including 523 kg N . hm-2 from commercial fertilizer, 74 kg N . hm-2 from manure, 23 kg N . hm-2 from atmosphere, and 12 kg N . hm-2 from irrigation. All of annual outputs summed to 532 kg N . hm-2 including 289 kg N . hm-2 for crop, 77 kg N . hm-2 staying in soil profile, leaching 104 kg N . hm-2, 52 kg N . hm-2 for ammonia volatilization, 10 kg N . hm-2 loss in nitrification and denitrification. Uncertainties of the individual cases and the summary process lead to the unbalance of nitrogen. For the dominant parts of the field water cycle, annual precipitation was 557 mm, irrigation was 340 mm, while 762 mm was for evapotranspiration and 135 mm was for deep percolation. Considering uncertainties in the nitrogen and water cycles, coupled experiments based on multi-disciplines would be useful for understanding mechanisms for nitrogen and water transfer processes in the soil-plant-atmosphere-continuum (SPAC) , and the interaction between nitrogen and water, as well as determining the critical threshold values for sustainability of soil and water resources in the NCP.

Incorporating a prognostic representation of marine nitrogen fixers into the global ocean biogeochemical model HAMOCC

NASA Astrophysics Data System (ADS)

Paulsen, Hanna; Ilyina, Tatiana; Six, Katharina D.; Stemmler, Irene

2017-03-01

Nitrogen (N2) fixation is a major source of bioavailable nitrogen to the euphotic zone, thereby exerting an important control on ocean biogeochemical cycling. This paper presents the incorporation of prognostic N2 fixers into the HAMburg Ocean Carbon Cycle model (HAMOCC), a component of the Max Planck Institute Earth System Model (MPI-ESM). Growth dynamics of N2 fixers in the model are based on physiological characteristics of the cyanobacterium Trichodesmium. The applied temperature dependency confines diazotrophic growth and N2 fixation to the tropical and subtropical ocean roughly between 40°S and 40°N. Simulated large-scale spatial patterns compare well with observations, and the global N2 fixation rate of 135.6 Tg N yr-1 is within the range of current estimates. The vertical distribution of N2 fixation also matches well the observations, with a major fraction of about 85% occurring in the upper 20 m. The observed seasonal variability at the stations BATS and ALOHA is reasonably reproduced, with highest fixation rates in northern summer/fall. Iron limitation was found to be an important factor in controlling the simulated distribution of N2 fixation, especially in the Pacific Ocean. The new model component considerably improves the representation of present-day N2 fixation in HAMOCC. It provides the basis for further studies on the role of diazotrophs in global biogeochemical cycles, as well as on the response of N2 fixation to changing environmental conditions.

Impact of Seasonal Variability in Water, Plant and Soil Nutrient Dynamics in Agroecosystems

NASA Astrophysics Data System (ADS)

Pelak, N. F., III; Revelli, R.; Porporato, A. M.

2017-12-01

Agroecosystems cover a significant fraction of the Earth's surface, making their water and nutrient cycles a major component of global cycles across spatial and temporal scales. Most agroecosystems experience seasonality via variations in precipitation, temperature, and radiation, in addition to human activities which also occur seasonally, such as fertilization, irrigation, and harvesting. These seasonal drivers interact with the system in complex ways which are often poorly characterized. Crop models, which are widely used for research, decision support, and prediction of crop yields, are among the best tools available to analyze these systems. Though normally constructed as a set of dynamical equations forced by hydroclimatic variability, they are not often analyzed using dynamical systems theory and methods from stochastic ecohydrology. With the goal of developing this viewpoint and thus elucidating the roles of key feedbacks and forcings on system stability and on optimal fertilization and irrigation strategies, we develop a minimal dynamical system which contains the key components of a crop model, coupled to a carbon and nitrogen cycling model, driven by seasonal fluctuations in water and nutrient availability, temperature, and radiation. External drivers include seasonally varying climatic conditions and random rainfall forcing, irrigation and fertilization as well as harvesting. The model is used to analyze the magnitudes and interactions of the effects of seasonality on carbon and nutrient cycles, crop productivity, nutrient export of agroecosystems, and optimal management strategies with reference to productivity, sustainability and profitability. The impact of likely future climate scenarios on these systems is also discussed.

EMERGY ANALYSIS OF THE PREHISTORIC NITROGEN CYCLE

EPA Science Inventory

Several relationships between the specific emergy or the emergy per unit mass and the mass concentration of nitrogen were shown to exist through an analysis of the global nitrogen cycle. These observed relationships were interpreted by examining the nature of the underlying ener...

Response of Functional Structure of Soil Microbial Community to Multi-level Nitrogen Additions on the Central Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, G.; Yuan, Y.

2015-12-01

The use of fossil fuels and fertilizers has increased the amount of biologically reactive nitrogen in the atmosphere over the past century. Tibet is the one of the most threatened regions by nitrogen deposition, thus understanding how its microbial communities function maybe of high importance to predicting microbial responses to nitrogen deposition. Here we describe a short-time nitrogen addition conducted in an alpine steppe ecosystem to investigate the response of functional structure of soil microbial community to multi-level nitrogen addition. Using a GeoChip 4.0, we showed that functional diversities and richness of functional genes were unchanged at low level of nitrogen fertilizer inputs (<20 kg N ha-1 yr-1), but significantly decreased at higher nitrogen fertilizer inputs (>=40 kg N ha-1 yr-1). Detrended correspondence analysis indicated that the functional structure of microbial communities was markedly different across the nitrogen gradients. Most C degradation genes whose abundances significantly increased under elevated N fertilizer were those involved in the degradation of relatively labile C (starch, hemicellulose, cellulose), whereas the abundance of certain genes involved in the degradation of recalcitrant C (i.e. lignin) was largely decreased (such as manganese peroxidase, mnp). The results suggest that the elevated N fertilization rates might significantly accelerate the labile C degradation, but might not spur recalcitrant C degradation. The combined effect of gdh and ureC genes involved in N cycling appeared to shift the balance between ammonia and organic N toward organic N ammonification and hence increased the N mineralization potential. Moreover, Urease directly involved in urea mineralization significantly increased. Lastly, Canonical correspondence analysis showed that soil (TOC+NH4++NO3-+NO2-+pH) and plant (Aboveground plant productivity + Shannon Diversity) variables could explain 38.9% of the variation of soil microbial community composition. On the basis of above observations, we predict that increasing of nitrogen deposition on the Tibetan steppe ecosystem is very likely to change soil microbial community functional structure, with particular effects on microbial C and N-cycling genes and consequently microbe-mediated soil C and N dynamics.

The geobiological nitrogen cycle: From microbes to the mantle.

PubMed

Zerkle, A L; Mikhail, S

2017-05-01

Nitrogen forms an integral part of the main building blocks of life, including DNA, RNA, and proteins. N 2 is the dominant gas in Earth's atmosphere, and nitrogen is stored in all of Earth's geological reservoirs, including the crust, the mantle, and the core. As such, nitrogen geochemistry is fundamental to the evolution of planet Earth and the life it supports. Despite the importance of nitrogen in the Earth system, large gaps remain in our knowledge of how the surface and deep nitrogen cycles have evolved over geologic time. Here, we discuss the current understanding (or lack thereof) for how the unique interaction of biological innovation, geodynamics, and mantle petrology has acted to regulate Earth's nitrogen cycle over geologic timescales. In particular, we explore how temporal variations in the external (biosphere and atmosphere) and internal (crust and mantle) nitrogen cycles could have regulated atmospheric pN 2 . We consider three potential scenarios for the evolution of the geobiological nitrogen cycle over Earth's history: two in which atmospheric pN 2 has changed unidirectionally (increased or decreased) over geologic time and one in which pN 2 could have taken a dramatic deflection following the Great Oxidation Event. It is impossible to discriminate between these scenarios with the currently available models and datasets. However, we are optimistic that this problem can be solved, following a sustained, open-minded, and multidisciplinary effort between surface and deep Earth communities. © 2017 The Authors Geobiology Published by John Wiley & Sons Ltd.

Controls of nitrogen cycling evaluated along a well-characterized climate gradient.

PubMed

von Sperber, Christian; Chadwick, Oliver A; Casciotti, Karen L; Peay, Kabir G; Francis, Christopher A; Kim, Amy E; Vitousek, Peter M

2017-04-01

The supply of nitrogen (N) constrains primary productivity in many ecosystems, raising the question "what controls the availability and cycling of N"? As a step toward answering this question, we evaluated N cycling processes and aspects of their regulation on a climate gradient on Kohala Volcano, Hawaii, USA. The gradient extends from sites receiving <300 mm/yr of rain to those receiving >3,000 mm/yr, and the pedology and dynamics of rock-derived nutrients in soils on the gradient are well understood. In particular, there is a soil process domain at intermediate rainfall within which ongoing weathering and biological uplift have enriched total and available pools of rock-derived nutrients substantially; sites at higher rainfall than this domain are acid and infertile as a consequence of depletion of rock-derived nutrients, while sites at lower rainfall are unproductive and subject to wind erosion. We found elevated rates of potential net N mineralization in the domain where rock-derived nutrients are enriched. Higher-rainfall sites have low rates of potential net N mineralization and high rates of microbial N immobilization, despite relatively high rates of gross N mineralization. Lower-rainfall sites have moderately low potential net N mineralization, relatively low rates of gross N mineralization, and rates of microbial N immobilization sufficient to sequester almost all the mineral N produced. Bulk soil δ 15 N also varied along the gradient, from +4‰ at high rainfall sites to +14‰ at low rainfall sites, indicating differences in the sources and dynamics of soil N. Our analysis shows that there is a strong association between N cycling and soil process domains that are defined using soil characteristics independent of N along this gradient, and that short-term controls of N cycling can be understood in terms of the supply of and demand for N. © 2017 by the Ecological Society of America.

Soil moisture surpasses elevated CO2 and temperature as a control on soil carbon dynamics in a multi-factor climate change experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garten Jr, Charles T; Classen, Aimee T; Norby, Richard J

2009-01-01

Some single-factor experiments suggest that elevated CO2 concentrations can increase soil carbon, but few experiments have examined the effects of interacting environmental factors on soil carbon dynamics. We undertook studies of soil carbon and nitrogen in a multi-factor (CO2 x temperature x soil moisture) climate change experiment on a constructed old-field ecosystem. After four growing seasons, elevated CO2 had no measurable effect on carbon and nitrogen concentrations in whole soil, particulate organic matter (POM), and mineral-associated organic matter (MOM). Analysis of stable carbon isotopes, under elevated CO2, indicated between 14 and 19% new soil carbon under two different watering treatmentsmore » with as much as 48% new carbon in POM. Despite significant belowground inputs of new organic matter, soil carbon concentrations and stocks in POM declined over four years under soil moisture conditions that corresponded to prevailing precipitation inputs (1,300 mm yr-1). Changes over time in soil carbon and nitrogen under a drought treatment (approximately 20% lower soil water content) were not statistically significant. Reduced soil moisture lowered soil CO2 efflux and slowed soil carbon cycling in the POM pool. In this experiment, soil moisture (produced by different watering treatments) was more important than elevated CO2 and temperature as a control on soil carbon dynamics.« less

Global patterns of foliar nitrogen isotopes and their relationships with climate, mycorrhizal fungi, foliar nutrient concentrations, and nitrogen availability

Treesearch

Joseph M. Craine; Andrew J. Elmore; Marcos P. M. Aidar; Mercedes Bustamante; Todd E. Dawson; Erik A. Hobbie; Ansgar Kahmen; Michelle C. Mack; Kendra K. McLauchlan; Anders Michelsen; Gabriela Nardoto; Linda H. Pardo; Josep Penuelas; Peter B. Reich; Edward A.G. Schuur; William D. Stock; Pamela H. Templer; Ross A. Virginia; Jeffrey M. Welker; Ian J. Wright

2009-01-01

Ratios of nitrogen (N) isotopes in leaves could elucidate underlying patterns of N cycling across ecological gradients. To better understand global-scale patterns of N cycling, we compiled data on foliar N isotope ratios, foliar N concentrations, mycorrhizal type and climate for over 11 000 plants worldwide. Global-scale comparisons of other components of the N cycle...

Convergent responses of nitrogen and phosphorus resorption to nitrogen inputs in a semiarid grassland

USGS Publications Warehouse

Lü, Xiao-Tao; Reed, Sasha; Yu, Qiang; He, Nian-Peng; Wang, Zheng-Wen; Han, Xing-Guo

2013-01-01

Human activities have significantly altered nitrogen (N) availability in most terrestrial ecosystems, with consequences for community composition and ecosystem functioning. Although studies of how changes in N availability affect biodiversity and community composition are relatively common, much less remains known about the effects of N inputs on the coupled biogeochemical cycling of N and phosphorus (P), and still fewer data exist regarding how increased N inputs affect the internal cycling of these two elements in plants. Nutrient resorption is an important driver of plant nutrient economies and of the quality of litter plants produce. Accordingly, resorption patterns have marked ecological implications for plant population and community fitness, as well as for ecosystem nutrient cycling. In a semiarid grassland in northern China, we studied the effects of a wide range of N inputs on foliar nutrient resorption of two dominant grasses, Leymus chinensis and Stipa grandis. After 4 years of treatments, N and P availability in soil and N and P concentrations in green and senesced grass leaves increased with increasing rates of N addition. Foliar N and P resorption significantly decreased along the N addition gradient, implying a resorption-mediated, positive plant–soil feedback induced by N inputs. Furthermore, N : P resorption ratios were negatively correlated with the rates of N addition, indicating the sensitivity of plant N and P stoichiometry to N inputs. Taken together, the results demonstrate that N additions accelerate ecosystem uptake and turnover of both N and P in the temperate steppe and that N and P cycles are coupled in dynamic ways. The convergence of N and P resorption in response to N inputs emphasizes the importance of nutrient resorption as a pathway by which plants and ecosystems adjust in the face of increasing N availability.

Nitrogen cycle inferred by δ15N in larch stand in northern Mongolia

NASA Astrophysics Data System (ADS)

Hayashi, Mika; Lopez C., Maximo Larry; Nobori, Yoshihiro; Byambasuren, Mijidsuren; Boy, Jens

2017-04-01

Mongolia represents the southernmost border of boreal forests and therefore is more sensitive to climate change. In boreal regions forest grow under N-limited conditions and for this reason rely on ectomycorrhizal fungi for the uptake of inorganic and dissolved organic N from the soil solution. A drastic increase in air temperature and a decrease or almost no change in summer precipitation has led to a severe climate induced drought that is expected to impact the nitrogen cycle in this region. Until now there has been no study on the nitrogen dynamics and especially not by means of stable isotope in the entire Eurasian boreal forests. Thus, in this study we evaluate the effect of spatial and climatic characteristics on the soil-tree N exchange in three representative larch forest stands (Larix sibirica) in the forest-steppe zone of central Mongolia. The results showed significant differences in the soil available N content and the influence that this difference exerts on the level of N fractionation from roots to leaves. In this study we observed heavier d15N in fine roots than in short roots (where the ectomycorrhizal fungi is attached) which was used as a proxy for soil available d15N. This value did not match total N d15N in any of the three sites selected for this study even though total N d15N has been used in previous studies as a proxy for available N d15N. Higher fractionation was observed in forest stands where available N was more limited indicating a heavier reliance on ectomycorrhizal fungi for inorganic N uptake. Coincidentally, the site with less available N was the southern site with the lowest precipitation. The opposite was found in the northern sites where available N was higher and thus fractionation showed lower values. Different tree tissues (fine and short-roots, stem, leaves) and litter showed multiple, intra-plant processes that influenced the isotope signal of the source-sink nitrogen dynamics.

NITROGEN: DEFINING LIMITS TO ECOSYSTEM RESTORATION; THE INFLUENCE OF SUCCESSION AND TROPHIC INTERACTIONS

EPA Science Inventory

A goal of this research is to investigate the interacting characteristics of biota and abiotic conditions relative to nitrogen cycling in the ecosystem. The research will support development of nitrogen cycling models with an ultimate application directed towards identification ...

The role of nitrogen fixation in neotropical dry forests: insights from ecosystem modeling and field data

NASA Astrophysics Data System (ADS)

Trierweiler, A.; Xu, X.; Gei, M. G.; Powers, J. S.; Medvigy, D.

2016-12-01

Tropical dry forests (TDFs) have immense functional diversity and face multiple resource constraints (both water and nutrients). Legumes are abundant and exhibit a wide diversity of N2-fixing strategies in TDFs. The abundance and diversity of legumes and their interaction with N2-fixing bacteria may strongly control the coupled carbon-nitrogen cycle in the biome and influence whether TDFs will be particularly vulnerable or uniquely adapted to projected global change. However, the importance of N2-fixation in TDFs and the carbon cost of acquiring N through symbiotic relationships are not fully understood. Here, we use models along with field measurements to examine the role of legumes, nitrogen fixation, and plant-symbiont nutrient exchanges in TDFs. We use a new version of the Ecosystem Demography (ED2) model that has been recently parameterized for TDFs. The new version incorporates plant-mycorrhizae interactions and multiple resource constraints (carbon, nitrogen, phosphorus, and water). We represent legumes and other functional groups found in TDFs with a range of resource acquisition strategies. In the model, plants then can dynamically adjust their carbon allocation and nutrient acquisition strategies (e.g. N2-fixing bacteria and mycorrhizal fungi) according to the nutrient limitation status. We test (i) the model's performance against a nutrient gradient of field sites in Costa Rica and (ii) the model's sensitivity to the carbon cost to acquire N through fixation and mycorrhizal relationships. We also report on simulated tree community responses to ongoing field nutrient fertilization experiments. We found that the inclusion of the N2-fixation legume plant functional traits were critical to reproducing community dynamics of Costa Rican field TDF sites and have a large impact on forest biomass. Simulated ecosystem fixation rates matched the magnitude and temporal patterns of field measured fixation. Our results show that symbiotic nitrogen fixation plays an important role in tropical dry forests and biomass accumulation. Also, we suggest that fixation's tight link to the rainy season could result in potential nutrient cycling vulnerabilities with projected rainfall changes.

Benchmarking carbon-nitrogen interactions in Earth System Models to observations: An inter-comparison of nitrogen limitation in global land surface models with carbon and nitrogen cycles (CLM-CN and O-CN)

NASA Astrophysics Data System (ADS)

Thomas, R. Q.; Zaehle, S.; Templer, P. H.; Goodale, C. L.

2011-12-01

Predictions of climate change depend on accurately modeling the feedbacks among the carbon cycle, nitrogen cycle, and climate system. Several global land surface models have shown that nitrogen limitation determines how land carbon fluxes respond to rising CO2, nitrogen deposition, and climate change, thereby influencing predictions of climate change. However, the magnitude of the carbon-nitrogen-climate feedbacks varies considerably by model, leading to critical and timely questions of why they differ and how they compare to field observations. To address these questions, we initiated a model inter-comparison of spatial patterns and drivers of nitrogen limitation. The experiment assessed the regional consequences of sustained nitrogen additions in a set of 25-year global nitrogen fertilization simulations. The model experiments were designed to cover effects from small changes in nitrogen inputs associated with plausible increases in nitrogen deposition to large changes associated with field-based nitrogen fertilization experiments. The analyses of model simulations included assessing the geographically varying degree of nitrogen limitation on plant and soil carbon cycling and the mechanisms underlying model differences. Here, we present results from two global land-surface models (CLM-CN and O-CN) with differing approaches to modeling carbon-nitrogen interactions. The predictions from each model were compared to a set of globally distributed observational data that includes nitrogen fertilization experiments, 15N tracer studies, small catchment nitrogen input-output studies, and syntheses across nitrogen deposition gradients. Together these datasets test many aspects of carbon-nitrogen coupling and are able to differentiate between the two models. Overall, this study is the first to explicitly benchmark carbon and nitrogen interactions in Earth System Models using a range of observations and is a foundation for future inter-comparisons.

Quantifying the contribution of single microbial cells to nitrogen assimilation in aquatic environments

NASA Astrophysics Data System (ADS)

Musat, N.; Kuypers, M. M. M.

2009-04-01

Nitrogen is a primary productivity-limiting nutrient in the ocean. The nitrogen limitation of productivity may be overcome by organisms capable of converting dissolved N2 into fixed nitrogen available to the ecosystem. In many oceanic regions, growth of phytoplankton is nitrogen limited because fixation of N2 cannot make up for the removal of fixed inorganic nitrogen (NH4+, NO2-, NO3-) by anaerobic microbial processes. The amount of available fixed nitrogen in the ocean can be changed by the biological processes of heterotrophic denitrification, anaerobic ammonium oxidation and nitrogen fixation. For a complete understanding of nitrogen cycling in the ocean a link between the microbial and biogeochemical processes at the single cell level and their role in global biogeochemical cycles is essential. Here we report a recently developed method, Halogen In Situ Hybridization-Secondary Ion Mass Spectroscopy (HISH-SIMS) and its potential application to study the nitrogen-cycle processes in the ocean. The method allows simultaneous phylogenetic identification and quantitation of metabolic activities of single microbial cells in the environment. It uses horseradish-peroxidase-labeled oligonucleotide probes and fluorine-containing tyramides for the identification of microorganisms in combination with stable-isotope-labeling experiments for analyzing the metabolic function of single microbial cells. HISH-SIMS was successfully used to study nitrogen assimilation and nitrogen fixation by anaerobic phototrophs in a meromictic alpine lake. The HISH-SIMS method enables studies of the ecophysiology of individual, phylogenetically identified microorganisms involved in the N-cycle and allows us to track the flow of nitrogen within microbial communities.

TThe role of nitrogen availability in land-atmosphere interactions: a systematic evaluation of carbon-nitrogen coupling in a global land surface model using plot-level nitrogen fertilization experiments

NASA Astrophysics Data System (ADS)

Thomas, R. Q.; Goodale, C. L.; Bonan, G. B.; Mahowald, N. M.; Ricciuto, D. M.; Thornton, P. E.

2010-12-01

Recent research from global land surface models emphasizes the important role of nitrogen cycling on global climate, via its control on the terrestrial carbon balance. Despite the implications of nitrogen cycling on global climate predictions, the research community has not performed a systematic evaluation of nitrogen cycling in global models. Here, we present such an evaluation for one global land model, CLM-CN. In the evaluation we simulated 45 plot-scale nitrogen-fertilization experiments distributed across 33 temperate and boreal forest sites. Model predictions were evaluated against field observations by comparing the vegetation and soil carbon responses to the additional nitrogen. Aggregated across all experiments, the model predicted a larger vegetation carbon response and a smaller soil carbon response than observed; the responses partially offset each other, leading to a slightly larger total ecosystem carbon response than observed. However, the model-observation agreement improved for vegetation carbon when the sites with observed negative carbon responses to nitrogen were excluded, which may be because the model lacks mechanisms whereby nitrogen additions increase tree mortality. Among experiments, younger forests and boreal forests’ vegetation carbon responses were less than predicted and mature forests (> 40 years old) were greater than predicted. Specific to the CLM-CN, this study used a systematic evaluation to identify key areas to focus model development, especially soil carbon- nitrogen interactions and boreal forest nitrogen cycling. Applicable to the modeling community, this study demonstrates a standardized protocol for comparing carbon-nitrogen interactions among global land models.

A Natural Light/Dark Cycle Regulation of Carbon-Nitrogen Metabolism and Gene Expression in Rice Shoots.

PubMed

Li, Haixing; Liang, Zhijun; Ding, Guangda; Shi, Lei; Xu, Fangsen; Cai, Hongmei

2016-01-01

Light and temperature are two particularly important environmental cues for plant survival. Carbon and nitrogen are two essential macronutrients required for plant growth and development, and cellular carbon and nitrogen metabolism must be tightly coordinated. In order to understand how the natural light/dark cycle regulates carbon and nitrogen metabolism in rice plants, we analyzed the photosynthesis, key carbon-nitrogen metabolites, and enzyme activities, and differentially expressed genes and miRNAs involved in the carbon and nitrogen metabolic pathway in rice shoots at the following times: 2:00, 6:00, 10:00, 14:00, 18:00, and 22:00. Our results indicated that more CO2 was fixed into carbohydrates by a high net photosynthetic rate, respiratory rate, and stomatal conductance in the daytime. Although high levels of the nitrate reductase activity, free ammonium and carbohydrates were exhibited in the daytime, the protein synthesis was not significantly facilitated by the light and temperature. In mRNA sequencing, the carbon and nitrogen metabolism-related differentially expressed genes were obtained, which could be divided into eight groups: photosynthesis, TCA cycle, sugar transport, sugar metabolism, nitrogen transport, nitrogen reduction, amino acid metabolism, and nitrogen regulation. Additionally, a total of 78,306 alternative splicing events have been identified, which primarily belong to alternative 5' donor sites, alternative 3' acceptor sites, intron retention, and exon skipping. In sRNA sequencing, four carbon and nitrogen metabolism-related miRNAs (osa-miR1440b, osa-miR2876-5p, osa-miR1877 and osa-miR5799) were determined to be regulated by natural light/dark cycle. The expression level analysis showed that the four carbon and nitrogen metabolism-related miRNAs negatively regulated their target genes. These results may provide a good strategy to study how natural light/dark cycle regulates carbon and nitrogen metabolism to ensure plant growth and development.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens

NASA Astrophysics Data System (ADS)

Gharajehdaghipour, Tazarve; Roth, James D.; Fafard, Paul M.; Markham, John H.

2016-04-01

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ15N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens.

PubMed

Gharajehdaghipour, Tazarve; Roth, James D; Fafard, Paul M; Markham, John H

2016-04-05

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ(15)N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens

PubMed Central

Gharajehdaghipour, Tazarve; Roth, James D.; Fafard, Paul M.; Markham, John H.

2016-01-01

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ15N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra. PMID:27045973

Towards a community Earth System Model

NASA Astrophysics Data System (ADS)

Blackmon, M.

2003-04-01

The Community Climate System Model, version 2 (CCSM2), was released in June 2002. CCSM2 has several new components and features, which I will discuss briefly. I will also show a few results from a multi-century equilibrium run with this model, emphasizing the improvements over the earlier simulation using the original CSM. A few flaws and inadequacies in CCSM2 have been identified. I will also discuss briefly work underway to improve the model and present results, if available. CCSM2, with improvements, will be the basis for the development of a Community Earth System Model (CESM). The highest priority for expansion of the model involves incorporation of biogeosciences into the coupled model system, with emphasis given to the carbon, nitrogen and iron cycles. The overall goal of the biogeosciences project within CESM is to understand the regulation of planetary energetics, planetary ecology, and planetary metabolism through exchanges of energy, momentum, and materials among atmosphere, land, and ocean, and the response of the climate system through these processes to changes in land cover and land use. In particular, this research addresses how biogeochemical coupling of carbon, nitrogen, and iron cycles affects climate and how human perturbations of these cycles alter climate. To accomplish these goals, the Community Land Model, the land component of CCSM2, is being developed to include river routing, carbon and nitrogen cycles, emissions of mineral aerosols and biogenic volatile organic compounds, dry deposition of various gases, and vegetation dynamics. The carbon and nitrogen cycles are being implemented using parameterizations developed as part of a state-of-the-art ecosystem biogeochemistry model. The primary goal of this research is to provide an accurate net flux of CO2 between the land and the atmosphere so that CESM can be used to study the dynamics of the coupled climate-carbon system. Emissions of biogenic volatile organic compounds are also based on a state-of-the-art emissions model and depend on plant type, leaf area index, photosynthetically active radiation, and leaf temperature. Dust emissions and deposition are being developed to implement a fully coupled dust cycle in CCSM, including the radiative effects of dust and carbon feedbacks related to fertilization of ocean and terrestrial ecosystems. Dust mobilization depends on surface wind speed, soil moisture, plant cover, and soil texture. Dust dry deposition processes include sedimentation and turbulent mix-out. A major research focus is how natural and human-mediated changes in land cover and ecosystem functions alter surface energy fluxes, the hydrological cycle, and biogeochemical cycles. Human land uses include conversion of natural vegetation to cropland, soil degradation, and urbanization. Climate feedbacks associated with natural changes in land cover are being assessed by developing and implementing a model of natural vegetation dynamics for use with the Community Land Model. Development of a marine ecosystem model is also underway. The ecosystem model is based on the global, mixed-layer marine ecosystem model of Moore et al., which includes parameterizations for such things as iron limitation and scavenging, zooplankton grazing, nitrogen fixation, calcification, and ballast-based remineralization. A series of experiments is being planned to assess the coupling of the ecology to the biogeochemistry, to adequately tune some of the model parameters that are poorly constrained by data, to explore new parameterizations and processes (e.g., riverine and atmospheric inputs of nutrients), and to conduct uncoupled application studies (e.g., deliberate carbon sequestration, retrospective historical simulations, iron-dust deposition response). Longer term plans include investigating biogeochemical processes in the coastal zone and how to incorporate these processes into a global ocean model, either through subgrid-scale parameterizations or model nesting. A Whole Atmosphere Community Climate Model(WACCM) is being developed. The vertical extent of the model is 150 km at present, but extension to 500 km is eventually expected. Interactive chemistry is being incorporated. This model will be used as the atmospheric component of CESM for some experiments. One expected application is the study of solar variability and its impact on climate variability in the troposphere and at the atmosphere, ocean, land interface. Preliminary results using some of these model components will be shown. A timeline for development and use of the models will be given.

Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity

NASA Astrophysics Data System (ADS)

Pellegrini, Adam F. A.; Ahlström, Anders; Hobbie, Sarah E.; Reich, Peter B.; Nieradzik, Lars P.; Staver, A. Carla; Scharenbroch, Bryant C.; Jumpponen, Ari; Anderegg, William R. L.; Randerson, James T.; Jackson, Robert B.

2018-01-01

Fire frequency is changing globally and is projected to affect the global carbon cycle and climate. However, uncertainty about how ecosystems respond to decadal changes in fire frequency makes it difficult to predict the effects of altered fire regimes on the carbon cycle; for instance, we do not fully understand the long-term effects of fire on soil carbon and nutrient storage, or whether fire-driven nutrient losses limit plant productivity. Here we analyse data from 48 sites in savanna grasslands, broadleaf forests and needleleaf forests spanning up to 65 years, during which time the frequency of fires was altered at each site. We find that frequently burned plots experienced a decline in surface soil carbon and nitrogen that was non-saturating through time, having 36 per cent (±13 per cent) less carbon and 38 per cent (±16 per cent) less nitrogen after 64 years than plots that were protected from fire. Fire-driven carbon and nitrogen losses were substantial in savanna grasslands and broadleaf forests, but not in temperate and boreal needleleaf forests. We also observe comparable soil carbon and nitrogen losses in an independent field dataset and in dynamic model simulations of global vegetation. The model study predicts that the long-term losses of soil nitrogen that result from more frequent burning may in turn decrease the carbon that is sequestered by net primary productivity by about 20 per cent of the total carbon that is emitted from burning biomass over the same period. Furthermore, we estimate that the effects of changes in fire frequency on ecosystem carbon storage may be 30 per cent too low if they do not include multidecadal changes in soil carbon, especially in drier savanna grasslands. Future changes in fire frequency may shift ecosystem carbon storage by changing soil carbon pools and nitrogen limitations on plant growth, altering the carbon sink capacity of frequently burning savanna grasslands and broadleaf forests.

Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity.

PubMed

Pellegrini, Adam F A; Ahlström, Anders; Hobbie, Sarah E; Reich, Peter B; Nieradzik, Lars P; Staver, A Carla; Scharenbroch, Bryant C; Jumpponen, Ari; Anderegg, William R L; Randerson, James T; Jackson, Robert B

2018-01-11

Fire frequency is changing globally and is projected to affect the global carbon cycle and climate. However, uncertainty about how ecosystems respond to decadal changes in fire frequency makes it difficult to predict the effects of altered fire regimes on the carbon cycle; for instance, we do not fully understand the long-term effects of fire on soil carbon and nutrient storage, or whether fire-driven nutrient losses limit plant productivity. Here we analyse data from 48 sites in savanna grasslands, broadleaf forests and needleleaf forests spanning up to 65 years, during which time the frequency of fires was altered at each site. We find that frequently burned plots experienced a decline in surface soil carbon and nitrogen that was non-saturating through time, having 36 per cent (±13 per cent) less carbon and 38 per cent (±16 per cent) less nitrogen after 64 years than plots that were protected from fire. Fire-driven carbon and nitrogen losses were substantial in savanna grasslands and broadleaf forests, but not in temperate and boreal needleleaf forests. We also observe comparable soil carbon and nitrogen losses in an independent field dataset and in dynamic model simulations of global vegetation. The model study predicts that the long-term losses of soil nitrogen that result from more frequent burning may in turn decrease the carbon that is sequestered by net primary productivity by about 20 per cent of the total carbon that is emitted from burning biomass over the same period. Furthermore, we estimate that the effects of changes in fire frequency on ecosystem carbon storage may be 30 per cent too low if they do not include multidecadal changes in soil carbon, especially in drier savanna grasslands. Future changes in fire frequency may shift ecosystem carbon storage by changing soil carbon pools and nitrogen limitations on plant growth, altering the carbon sink capacity of frequently burning savanna grasslands and broadleaf forests.

Description, calibration and sensitivity analysis of the local ecosystem submodel of a global model of carbon and nitrogen cycling and the water balance in the terrestrial biosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kercher, J.R.; Chambers, J.Q.

1995-10-01

We have developed a geographically-distributed ecosystem model for the carbon, nitrogen, and water dynamics of the terrestrial biosphere TERRA. The local ecosystem model of TERRA consists of coupled, modified versions of TEM and DAYTRANS. The ecosystem model in each grid cell calculates water fluxes of evaporation, transpiration, and runoff; carbon fluxes of gross primary productivity, litterfall, and plant and soil respiration; and nitrogen fluxes of vegetation uptake, litterfall, mineralization, immobilization, and system loss. The state variables are soil water content; carbon in live vegetation; carbon in soil; nitrogen in live vegetation; organic nitrogen in soil and fitter; available inorganic nitrogenmore » aggregating nitrites, nitrates, and ammonia; and a variable for allocation. Carbon and nitrogen dynamics are calibrated to specific sites in 17 vegetation types. Eight parameters are determined during calibration for each of the 17 vegetation types. At calibration, the annual average values of carbon in vegetation C, show site differences that derive from the vegetation-type specific parameters and intersite variation in climate and soils. From calibration, we recover the average C{sub v} of forests, woodlands, savannas, grasslands, shrublands, and tundra that were used to develop the model initially. The timing of the phases of the annual variation is driven by temperature and light in the high latitude and moist temperate zones. The dry temperate zones are driven by temperature, precipitation, and light. In the tropics, precipitation is the key variable in annual variation. The seasonal responses are even more clearly demonstrated in net primary production and show the same controlling factors.« less

Microbial ecology of soda lakes: investigating sulfur and nitrogen cycling at Mono Lake, CA, USA

NASA Astrophysics Data System (ADS)

Fairbanks, D.; Phillips, A. A.; Wells, M.; Bao, R.; Fullerton, K. M.; Stamps, B. W.; Speth, D. R.; Johnson, H.; Sessions, A. L.

2017-12-01

Soda lakes represent unique ecosystems characterized by extremes of pH, salinity and distinct geochemical cycling. Despite these extreme conditions, soda lakes are important repositories of biological adaptation and have a highly functional microbial system. We investigated the biogeochemical cycling of sulfur and nitrogen compounds in Mono Lake, California, located east of the Sierra Nevada mountains. Mono lake is characterized by hyperalkaline, hypersaline and high sulfate concentrations and can enter prolonged periods of meromixis due to freshwater inflow. Typically, the microbial sulfur cycle is highly active in soda lakes with both oxidation and reduction of sulfur compounds. However, the biological sulfur cycle is connected to many other main elemental cycles such as carbon, nitrogen and metals. Here we investigated the interaction between sulfur and nitrogen cycling in Mono lake using a combination of molecular, isotopic, and geochemical observations to explore the links between microbial phylogenetic composition and functionality. Metagenomic and 16S rRNA gene amplicon sequencing were determined at two locations and five depths in May 2017. 16S rRNA gene amplicon sequencing analysis revealed organisms capable of both sulfur and nitrogen cycling. The relative abundance and distribution of functional genes (dsrA, soxAB, nifH, etc) were also determined. These genetic markers indicate the potential in situ relevance of specific carbon, nitrogen, and sulfur pathways in the water column prior to the transition to meromictic stratification. However, genes for sulfide oxidation, denitrification, and ammonification were present. Genome binning guided by the most abundant dsrA sequences, GC content, and abundance with depth identified a Thioalkalivibrio paradoxus bin containing genes capable of sulfur oxidation, denitrification, and nitrate reduction. The presence of a large number of sulfur and nitrogen cycling genes associated with Thioalkalivibrio paradoxus suggests thiosulfate oxidation may be coupled to nitrate reduction despite the extremely low level of nitrate in Mono Lake. Our results illustrate the centrality of living organisms in both shaping and responding to geochemical cycles, as well as future directions for exploring coupled biogeochemical cycles in Mono Lake.

Impacts of prescribed fire on ecosystem C and N cycles at Fort Benning Installation, Georgia

NASA Astrophysics Data System (ADS)

Zhao, S.; Liu, S.; Tieszen, L.

2007-12-01

A critical challenge for the land managers at military installation is to maintain the ecological sustainability of natural resources while meeting the needs of military training. Prescribed ground fire as a land management practice has been used to remove the ground layer plants at Fort Benning for two purposes: to facilitate access for military training, and to maintain and restore fire-adapted longleaf pine communities that are critical habitat for the federally endangered red-cockaded woodpecker (Picoides borealis). Nevertheless, the impacts of prescribed fire on ecosystem processes and health are not well-understood and quantified at the plot to regional scales. Frequent fire may result in ecosystem nitrogen (N) deficiency due to repeated N loss through combustion, volatilization, and leaching, threatening ecosystem sustainability at Fort Benning. On the other hand, N loss may be offset by enhanced symbiotic N2 fixation since fire favors herbaceous legumes by scarifying legume seeds and stimulating germination. Quantifying the impacts of prescribed fire on ecosystem carbon (C) and N cycles is further complicated by interactions and feedbacks among burning, nitrogen inputs, other land use practices (e.g. tree thinning or clear-cutting), and soil properties. In this study, we used the Erosion-Deposition-Carbon Model (EDCM), a process-based biogeochemical model, to simulate C and N dynamic at Fort Benning under different combinations of fire frequency, fire intensity, nitrogen deposition, legume nitrogen input, forest harvesting, and soil sand content. Model simulations indicated that prescribed fire led to nitrogen losses from ecosystems at Fort Benning, especially with high intensity and high frequency fires. Forest harvesting further intensified ecosystem nitrogen limitation, leading to reduced biophysical potential of C sequestration. The adverse impacts of prescribed fire and forest harvesting on C and N cycles were much higher in more sandy soil than in less sandy soil. N inputs from nitrogen deposition and legume N fixation helped replenish N losses to some extent. However, N losses due to fire and harvesting were not balanced or exceeded under current atmospheric N deposition and legume N input rates, suggesting additional N input (e.g., fertilization) may be needed to maintain the sustainability of current ecosystem states and management practices at Fort Benning.

Linking hyporheic flow and nitrogen cycling near the Willamette River - A large river in Oregon, USA

USGS Publications Warehouse

Hinkle, S.R.; Duff, J.H.; Triska, F.J.; Laenen, A.; Gates, E.B.; Bencala, K.E.; Wentz, D.A.; Silva, S.R.

2001-01-01

Several approaches were used to characterize ground water/surface water interactions near the Willamette River - A large (ninth order) river in Oregon, USA. A series of potentiometric surface maps demonstrated the presence of highly dynamic hydraulic gradients between rivers and the adjacent aquifer. Hyporheic zone gradients extended on the order of hundreds of meters. River gains and losses at the river stretch scale (tens of kilometers) were consistent with fluxes implied by the potentiometric surface maps, and apparently reflect regional ground water/surface water interactions. Gains and losses of up to 5-10% of streamflow were observed at this scale. On the river reach scale (1-2 km), gains and losses on the order of 5% of streamflow were interpreted as representing primarily local hyporheic exchange. Isotopic and chemical data collected from shallow hyporheic zone wells demonstrated interaction between regional ground water and river water. The origin of sampled hyporheic zone water ranged from a mixture dominated by regional ground water to water containing 100% river water. The common assumption that ground and river water mix primarily in the river channel is not applicable in this system. Isotopic and chemical data also indicated that significant (nearly complete) vegetative nitrate uptake and/or nitrate reduction occurred in water from 4 of 12 hyporheic zone sites. In these cases, it was primarily nitrate transported to the hyporheic zone in regional ground water that was removed from solution. Isotopes of water and nitrate indicated that hyporheic zone water sampled at two sites was composed of water originating as river water and demonstrated that significant vegetative nitrate uptake and nitrate reduction occurred along these hyporheic zone flowpaths. Thus, the hyporheic zone may, in some instances, serve to remove nitrate from river water. Additional investigations with chemical tools and microbial enzyme assays were conducted at one hyporheic site. A strong vertical redox gradient was observed, with nitrate-limited denitrification potential in deeper sediment and both nitrification and denitrification potential in shallower sediment. Since nitrogen cycling is strongly affected by redox conditions, nitrogen cycling in the hyporheic zone of this large-river system likely is affected by dynamics of ground water/surface water interactions that control fluxes of nitrogen and other redox species to hyporheic zone sediment.

Transformation of the nitrogen cycle: recent trends, questions, and potential solutions.

PubMed

Galloway, James N; Townsend, Alan R; Erisman, Jan Willem; Bekunda, Mateete; Cai, Zucong; Freney, John R; Martinelli, Luiz A; Seitzinger, Sybil P; Sutton, Mark A

2008-05-16

Humans continue to transform the global nitrogen cycle at a record pace, reflecting an increased combustion of fossil fuels, growing demand for nitrogen in agriculture and industry, and pervasive inefficiencies in its use. Much anthropogenic nitrogen is lost to air, water, and land to cause a cascade of environmental and human health problems. Simultaneously, food production in some parts of the world is nitrogen-deficient, highlighting inequities in the distribution of nitrogen-containing fertilizers. Optimizing the need for a key human resource while minimizing its negative consequences requires an integrated interdisciplinary approach and the development of strategies to decrease nitrogen-containing waste.

Impact of Hydrologic Variability on Ecosystem Dynamics and the Sustainable Use of Soil and Water Resources

NASA Astrophysics Data System (ADS)

Porporato, A. M.

2013-05-01

We discuss the key processes by which hydrologic variability affects the probabilistic structure of soil moisture dynamics in water-controlled ecosystems. These in turn impact biogeochemical cycling and ecosystem structure through plant productivity and biodiversity as well as nitrogen availability and soil conditions. Once the long-term probabilistic structure of these processes is quantified, the results become useful to understand the impact of climatic changes and human activities on ecosystem services, and can be used to find optimal strategies of water and soil resources management under unpredictable hydro-climatic fluctuations. Particular applications regard soil salinization, phytoremediation and optimal stochastic irrigation.

The water quality of the River Enborne, UK: insights from high-frequency monitoring

NASA Astrophysics Data System (ADS)

Halliday, Sarah; Skeffington, Richard; Wade, Andrew; Bowes, Mike; Gozzard, Emma; Palmer-Felgate, Elizabeth; Newman, Johnathan; Jarvie, Helen; Loewenthal, Matt

2014-05-01

The River Enborne is a rural lowland catchment, impacted by agricultural runoff, and septic tank and sewage treatment works (STWs) discharges. Between November 2009 and February 2012, the river was instrumented with in situ analytical equipment to take hourly measurements of total reactive phosphorus (TRP), using a Systea Micromac C; nitrate, using a Hach Lange Nitratax; and pH, chlorophyll, dissolved oxygen, conductivity, turbidity and water temperature, using a YSI 6600 Multi-parameter sonde. In addition, weekly 'grab samples' were also collected and analysed for a wide range of chemical determinands including major ions, nutrients, and trace elements. The catchment land use is largely agricultural, with wheat the dominant crop, and the average population density is 123 persons per sq. km. The river water is largely derived from calcareous groundwater, with a mean calcium concentration of 68.5 mg/l, and high nitrogen and phosphorus concentrations, with mean nitrate and TRP concentrations of 3.96 mg/l-N and 0.17 mg/l-P respectively. A mass-balance for the catchment demonstrated that agricultural fertiliser is the dominant source of annual loads of both nitrogen and phosphorus, accounting for 77 % and 84 % respectively. However, the concentration data show that sewage effluent discharges have a disproportionate effect on the river nitrogen and phosphorus dynamics, with the diurnal STW discharge signal discernable in the high-frequency nutrient dynamics. The nutrient dynamics and correlation structure of the data indicate a substantial contribution of groundwater and agricultural runoff to stream nitrate concentrations, whereas discharges from septic tank systems and sewage treatment works are a more important source of phosphorus. The high-frequency turbidity and conductivity dynamics reveal key information about the seasonal changes controlling the system dynamics, with marked differences in diurnal conductivity dynamics at the onset of riparian shading linked to the decreased importance of the photosynthetically-driven cycle of bicarbonate concentration. Only 4 % of the phosphorus input and 9 % of the nitrogen input is exported from the catchment by the river, highlighting the importance of catchment process understanding in predicting nutrient concentrations. High-frequency monitoring will be a key to developing this vital process understanding.

The Impact of Extreme Flooding on Mussel and Microbial Nutrient Dynamics at the Water-Sediment Interface

NASA Astrophysics Data System (ADS)

Bril, J.; Just, C. L.; Newton, T.; Young, N.; Parkin, G.

2009-12-01

Labeled by the National Academy of Engineering as one of fourteen grand challenges for engineering, the management of the nitrogen cycle has become an increasingly difficult obstacle for sustainable development. In an effort to improve nitrogen cycle management practices, we are attempting to expand on the limited scientific knowledge of how aquatic environments are affected by increasing human- and climate-induced changes. To accomplish this, we are using freshwater mussels as a sentinel species to indicate how natural processes within large river systems may be altered by human activity. Freshwater mussels have been referred to as ‘ecosystem engineers’ because they exert control over food resources and alter habitats for other organisms. Also, mussels and bacteria play a major role in nutrient cycling in large river systems by cycling nutrients taken up by phytoplankton and zooplankton. Under ‘normal’ environmental conditions, mussels appear to process nitrogen more rapidly than denitrifying bacteria. However, substantial deposition of carbon-rich sediment resulting from extreme flooding may increase bacterial nitrogen cycling rates and subsequently alter overall denitrification rates. We hypothesize that intense depositions of particulate matter from recent extreme floods in the Upper Mississippi River Basin (UMRB) have altered the freshwater mussel and microbial food webs through physical and chemical means. This work will be done in a 1200-m reach of the UMRB near Buffalo, Iowa. The reach contains a healthy and diverse assemblage of freshwater mussels. A historic flood event during May-July 2008 coincided with intense spring cultivation and nutrient application activities in the heavily farmed landscape of the Upper Midwest and resulted in a significant pulse of agricultural contaminants to the UMRB. This led scientists to predict an almost unprecedented delivery of sediment and nutrients to the mussel bed, the broader Mississippi River, and ultimately to the Gulf of Mexico. We will correlate the rate of nitrogen removal by mussels to the concentrations of organic carbon that may have been deposited during the flood. Initial studies suggest that the highest amount of total organic carbon exists in areas of fine sediments within the mussel bed. Additionally, bacterial nitrate reduction studies indicate that significantly higher rates of denitrification occur in areas of high organic content. Increased availability of organic carbon may affect the rate that mussels process nitrogen. In field studies, mussel densities are generally greater in areas of coarser sediments (thus, less carbon and less bacterial nutrient processing). We are currently working to determine the role of organic carbon availability on denitrification in a laboratory system containing mussels and bacteria. We also hope to couple sediment grain size with organic carbon to compare organic carbon content pre- and post-flood.

Parasite infection alters nitrogen cycling at the ecosystem scale.

PubMed

Mischler, John; Johnson, Pieter T J; McKenzie, Valerie J; Townsend, Alan R

2016-05-01

Despite growing evidence that parasites often alter nutrient flows through their hosts and can comprise a substantial amount of biomass in many systems, whether endemic parasites influence ecosystem nutrient cycling, and which nutrient pathways may be important, remains conjectural. A framework to evaluate how endemic parasites alter nutrient cycling across varied ecosystems requires an understanding of the following: (i) parasite effects on host nutrient excretion; (ii) ecosystem nutrient limitation; (iii) effects of parasite abundance, host density, host functional role and host excretion rate on nutrient flows; and (iv) how this infection-induced nutrient flux compares to other pools and fluxes. Pathogens that significantly increase the availability of a limiting nutrient within an ecosystem should produce a measurable ecosystem-scale response. Here, we combined field-derived estimates of trematode parasite infections in aquatic snails with measurements of snail excretion and tissue stoichiometry to show that parasites are capable of altering nutrient excretion in their intermediate host snails (dominant grazers). We integrated laboratory measurements of host nitrogen excretion with field-based estimates of infection in an ecosystem model and compared these fluxes to other pools and fluxes of nitrogen as measured in the field. Eighteen nitrogen-limited ponds were examined to determine whether infection had a measurable effect on ecosystem-scale nitrogen cycling. Because of their low nitrogen content and high demand for host carbon, parasites accelerated the rate at which infected hosts excreted nitrogen to the water column in a dose-response manner, thereby shifting nutrient stoichiometry and availability at the ecosystem scale. Infection-enhanced fluxes of dissolved inorganic nitrogen were similar to other commonly important environmental sources of bioavailable nitrogen to the system. Additional field measurements within nitrogen-limited ponds indicated that nitrogen flux rates from the periphyton to the water column in high-snail density/high-infection ponds were up to 50% higher than low-infection ponds. By altering host nutrient assimilation/excretion flexibility, parasites could play a widespread, but currently unrecognized, role in ecosystem nutrient cycling, especially when parasite and host abundances are high and hosts play a central role in ecosystem nutrient cycling. © 2016 The Authors. Journal of Animal Ecology © 2016 British Ecological Society.

The microbial nitrogen-cycling network.

PubMed

Kuypers, Marcel M M; Marchant, Hannah K; Kartal, Boran

2018-05-01

Nitrogen is an essential component of all living organisms and the main nutrient limiting life on our planet. By far, the largest inventory of freely accessible nitrogen is atmospheric dinitrogen, but most organisms rely on more bioavailable forms of nitrogen, such as ammonium and nitrate, for growth. The availability of these substrates depends on diverse nitrogen-transforming reactions that are carried out by complex networks of metabolically versatile microorganisms. In this Review, we summarize our current understanding of the microbial nitrogen-cycling network, including novel processes, their underlying biochemical pathways, the involved microorganisms, their environmental importance and industrial applications.

The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Eric L.; Aylward, Frank O.; Kim, Young-Mo

Leaf-cutter ants are dominant herbivores in ecosystems throughout the Neotropics. Rather than directly consuming the fresh foliar biomass they harvest, these ants use it to cultivate specialized fungus gardens. Although recent investigations have shed light on how plant biomass is degraded in fungus gardens, the cycling of nutrients that takes place in these specialized microbial ecosystems is still not well understood. Here, using metametabolomics and metaproteomics techniques, we examine the dynamics of nutrient turnover and biosynthesis in these gardens. Our results reveal that numerous free amino acids and sugars are depleted throughout the process of biomass degradation, indicating that easilymore » accessible nutrients from plant material are readily consumed by microbes in these ecosystems. Accumulation of cellobiose and lignin derivatives near the end of the degradation process is consistent with previous findings of cellulases and laccases produced by Leucoagaricus gongylophorus, the fungus cultivated by leaf-cutter ants. Our results also suggest that ureides may be an important source of nitrogen in fungus gardens, especially during nitrogen-limiting conditions. No free arginine was detected in our metametabolomics experiments despite evidence that the host ants cannot produce this amino acid, suggesting that biosynthesis of this metabolite may be tightly regulated in the fungus garden. These results provide new insights into the dynamics of nutrient cycling that underlie this important ant-fungus symbiosis.« less

Impacts of Human Alteration of the Nitrogen Cycle in the U.S. on Radiative Forcing

EPA Science Inventory

Nitrogen cycling processes affect radiative forcing directly through emissions of nitrous oxide (N2O) and indirectly because emissions of nitrogen oxide (NO x ) and ammonia (NH3) affect atmospheric concentrations of methane (CH4), carbon dioxide (CO2), water vapor (H2O), ozone (O...

Influence of forest disturbance on stable nitrogen isotope ratios in soil and vegetation profiles

Treesearch

Jennifer D. Knoepp; Scott R. Taylor; Lindsay R. Boring; Chelcy F. Miniat

2015-01-01

Soil and plant stable nitrogen isotope ratios (15 N) are influenced by atmospheric nitrogen (N) inputs and processes that regulate organic matter (OM) transformation and N cycling. The resulting 15N patterns may be useful for discerning ecosystem differences in N cycling. We studied two ecosystems; longleaf pine wiregrass (...

Litter decomposition, N2-fixer abundance, and microbial dynamics govern tropical dry forest recovery to land use change

NASA Astrophysics Data System (ADS)

Trierweiler, A.; Powers, J. S.; Xu, X.; Gei, M. G.; Medvigy, D.

2017-12-01

As one of the most threatened tropical biomes, Seasonal Dry Tropical Forests (TDF) have undergone extensive land-use change. However, some areas are undergoing recovery into secondary forests. Despite their broad distribution (42% of tropical forests), they are under-studied compared to wet tropical forests and our understanding of their biogeochemical cycling and belowground processes are limited. Here, we use models along with field measurements to improve our understanding of nutrient cycling and limitation in secondary TDFs. We ask (1) Is there modeling evidence that tropical dry forests can become nutrient limited? (2) What are the most important mechanisms employed to avoid nutrient limitation? (3) How might climate change alter biogeochemical cycling and nutrient limitation in recovering TDF? We use a new version of the Ecosystem Demography (ED2) model that has been recently parameterized for TDFs and incorporates a range of plant functional groups (including deciduousness and N2-fixation) and multiple resource constraints (carbon, nitrogen, phosphorus, and water). In the model, plants then can dynamically adjust their carbon allocation and nutrient acquisition strategies using N2-fixing bacteria and mycorrhizal fungi according to the nutrient limitation status. We ran the model for a nutrient gradient of field sites in Costa Rica and explored the sensitivity of nutrient limitation to key mechanisms including litter respiration, N resorption, N2-fixation, and overflow respiration. Future runs will evaluate how CO2 and climate change affect recovering TDFs. We found increasing nutrient limitation across the nutrient gradient of sites. Nitrogen limitation dominated the nutrient limitation signal. In the model, forest litter accumulation was negatively correlated with site fertility in Costa Rican forests. Our sensitivity analyses indicate that N2-fixer abundance, decomposition rates, and adding more explicit microbial dynamics are key factors in overcoming this limitation. These insights improve our understanding of how TDFs function and are especially relevant to the management of recovering secondary TDFs by highlighting potential bottlenecks in the recovery process.

Grazing-induced reduction of natural nitrous oxide release from continental steppe.

PubMed

Wolf, Benjamin; Zheng, Xunhua; Brüggemann, Nicolas; Chen, Weiwei; Dannenmann, Michael; Han, Xingguo; Sutton, Mark A; Wu, Honghui; Yao, Zhisheng; Butterbach-Bahl, Klaus

2010-04-08

Atmospheric concentrations of the greenhouse gas nitrous oxide (N(2)O) have increased significantly since pre-industrial times owing to anthropogenic perturbation of the global nitrogen cycle, with animal production being one of the main contributors. Grasslands cover about 20 per cent of the temperate land surface of the Earth and are widely used as pasture. It has been suggested that high animal stocking rates and the resulting elevated nitrogen input increase N(2)O emissions. Internationally agreed methods to upscale the effect of increased livestock numbers on N(2)O emissions are based directly on per capita nitrogen inputs. However, measurements of grassland N(2)O fluxes are often performed over short time periods, with low time resolution and mostly during the growing season. In consequence, our understanding of the daily and seasonal dynamics of grassland N(2)O fluxes remains limited. Here we report year-round N(2)O flux measurements with high and low temporal resolution at ten steppe grassland sites in Inner Mongolia, China. We show that short-lived pulses of N(2)O emission during spring thaw dominate the annual N(2)O budget at our study sites. The N(2)O emission pulses are highest in ungrazed steppe and decrease with increasing stocking rate, suggesting that grazing decreases rather than increases N(2)O emissions. Our results show that the stimulatory effect of higher stocking rates on nitrogen cycling and, hence, on N(2)O emission is more than offset by the effects of a parallel reduction in microbial biomass, inorganic nitrogen production and wintertime water retention. By neglecting these freeze-thaw interactions, existing approaches may have systematically overestimated N(2)O emissions over the last century for semi-arid, cool temperate grasslands by up to 72 per cent.

Variability of Stratospheric Reactive Nitrogen and Ozone Related to the QBO

NASA Astrophysics Data System (ADS)

Park, M.; Randel, W. J.; Kinnison, D. E.; Bourassa, A. E.; Degenstein, D. A.; Roth, C. Z.; McLinden, C. A.; Sioris, C. E.; Livesey, N. J.; Santee, M. L.

2017-09-01

The stratospheric quasi-biennial oscillation (QBO) dominates interannual variability of dynamical variables and trace constituents in the tropical stratosphere and provides a natural experiment to test circulation-chemistry interactions. This work quantifies the relationships among ozone (O3), reactive nitrogen (NOy), and source gas N2O, and their links to the QBO, based on satellite constituent measurements and meteorological data spanning 2005-2014 (over four QBO cycles). Data include O3, HNO3, and N2O from the Aura Microwave Limb Sounder and an NOx proxy derived from Optical Spectrograph and Infrared Imager System NO2 measurements combined with a photochemical box model (= NOx*). Results are compared to simulations from the Whole Atmosphere Community Climate Model, version 4 incorporating a QBO circulation nudged to assimilated winds. Cross correlations and composites with respect to the QBO phase show coherent 180° out-of-phase relationships between NOy and N2O throughout the stratosphere, with the NOx/HNO3 ratio increasing with altitude. The anomalies in NOy species propagate coherently downward with the QBO. Ozone is anticorrelated with reactive nitrogen in the middle stratosphere above 28 km due to NOx control of ozone catalytic loss cycles. Quantitative comparisons of nitrogen partitioning and O3 sensitivity to NOx show good overall agreement between satellite observations and model results (suggesting closure of the NOy budget), although the model results show larger (up to 20%) N2O, NOx, and O3 variations near 35 km compared to observations. These analyses serve to assess the consistency of diverse satellite-based data sets and also to evaluate nitrogen partitioning and NOx-dependent ozone chemistry in the global model.

Assessing nitrogen fixation in mixed- and single-species plantations of Eucalyptus globulus and Acacia mearnsii.

PubMed

Forrester, David I; Schortemeyer, Marcus; Stock, William D; Bauhus, Jürgen; Khanna, Partap K; Cowie, Annette L

2007-09-01

Mixtures of Eucalyptus globulus Labill. and Acacia mearnsii de Wildeman are twice as productive as E. globulus monocultures growing on the same site in East Gippsland, Victoria, Australia, possibly because of increased nitrogen (N) availability owing to N(2) fixation by A. mearnsii. To investigate whether N(2) fixation by A. mearnsii could account for the mixed-species growth responses, we assessed N(2) fixation by the accretion method and the (15)N natural abundance method. Nitrogen gained by E. globulus and A. mearnsii mixtures and monocultures was calculated by the accretion method with plant and soil samples collected 10 years after plantation establishment. Nitrogen in biomass and soil confirmed that A. mearnsii influenced N dynamics. Assuming that the differences in soil, forest floor litter and biomass N of plots containing A. mearnsii compared with E. globulus monocultures were due to N(2) fixation, the 10-year annual mean rates of N(2) fixation were 38 and 86 kg ha(-1) year(-1) in 1:1 mixtures and A. mearnsii monocultures, respectively. Nitrogen fixation by A. mearnsii could not be quantified on the basis of the natural abundance of (15)N because such factors as mycorrhization type and fractionation of N isotopes during N cycling within the plant confounded the effect of the N source on the N isotopic signature of plants. This study shows that A. mearnsii fixed significant quantities of N(2) when mixed with E. globulus. A decline in delta(15)N values of E. globulus and A. mearnsii with time, from 2 to 10 years, is further evidence that N(2) was fixed and cycled through the stands. The increased aboveground biomass production of E. globulus trees in mixtures when compared with monocultures can be attributed to increases in N availability.

Terrestrial nitrogen-carbon cycle interactions at the global scale.

PubMed

Zaehle, S

2013-07-05

Interactions between the terrestrial nitrogen (N) and carbon (C) cycles shape the response of ecosystems to global change. However, the global distribution of nitrogen availability and its importance in global biogeochemistry and biogeochemical interactions with the climate system remain uncertain. Based on projections of a terrestrial biosphere model scaling ecological understanding of nitrogen-carbon cycle interactions to global scales, anthropogenic nitrogen additions since 1860 are estimated to have enriched the terrestrial biosphere by 1.3 Pg N, supporting the sequestration of 11.2 Pg C. Over the same time period, CO2 fertilization has increased terrestrial carbon storage by 134.0 Pg C, increasing the terrestrial nitrogen stock by 1.2 Pg N. In 2001-2010, terrestrial ecosystems sequestered an estimated total of 27 Tg N yr(-1) (1.9 Pg C yr(-1)), of which 10 Tg N yr(-1) (0.2 Pg C yr(-1)) are due to anthropogenic nitrogen deposition. Nitrogen availability already limits terrestrial carbon sequestration in the boreal and temperate zone, and will constrain future carbon sequestration in response to CO2 fertilization (regionally by up to 70% compared with an estimate without considering nitrogen-carbon interactions). This reduced terrestrial carbon uptake will probably dominate the role of the terrestrial nitrogen cycle in the climate system, as it accelerates the accumulation of anthropogenic CO2 in the atmosphere. However, increases of N2O emissions owing to anthropogenic nitrogen and climate change (at a rate of approx. 0.5 Tg N yr(-1) per 1°C degree climate warming) will add an important long-term climate forcing.

Emiliania huxleyi endures N-limitation with an efficient metabolic budgeting and effective ATP synthesis.

PubMed

Rokitta, Sebastian D; Von Dassow, Peter; Rost, Björn; John, Uwe

2014-12-02

Global change will affect patterns of nutrient upwelling in marine environments, potentially becoming even stricter regulators of phytoplankton primary productivity. To better understand phytoplankton nutrient utilization on the subcellular basis, we assessed the transcriptomic responses of the life-cycle stages of the biogeochemically important microalgae Emiliania huxleyi to nitrogen-limitation. Cells grown in batch cultures were harvested at 'early' and 'full' nitrogen-limitation and were compared with non-limited cells. We applied microarray-based transcriptome profilings, covering ~10.000 known E. huxleyi gene models, and screened for expression patterns that indicate the subcellular responses. The diploid life-cycle stage scavenges nitrogen from external organic sources and -like diatoms- uses the ornithine-urea cycle to rapidly turn over cellular nitrogen. The haploid stage reacts similarly, although nitrogen scavenging is less pronounced and lipid oxidation is more prominent. Generally, polyamines and proline appear to constitute major organic pools that back up cellular nitrogen. Both stages induce a malate:quinone-oxidoreductase that efficiently feeds electrons into the respiratory chain and drives ATP generation with reduced respiratory carbon throughput. The use of the ornithine-urea cycle to budget the cellular nitrogen in situations of limitation resembles the responses observed earlier in diatoms. This suggests that underlying biochemical mechanisms are conserved among distant clades of marine phototrophic protists. The ornithine-urea cycle and proline oxidation appear to constitute a sensory-regulatory system that monitors and controls cellular nitrogen budgets under limitation. The similarity between the responses of the life-cycle stages, despite the usage of different genes, also indicates a strong functional consistency in the responses to nitrogen-limitation that appears to be owed to biochemical requirements. The malate:quinone-oxidoreductase is a genomic feature that appears to be absent from diatom genomes, and it is likely to strongly contribute to the uniquely high endurance of E. huxleyi under nutrient limitation.

Thermodynamic Modeling and Mechanical Design of a Liquid Nitrogen Vaporization and Pressure Building Device

NASA Astrophysics Data System (ADS)

Leege, Brian J.

The design of a liquid nitrogen vaporization and pressure building device that has zero product waste while recovering some of its stored energy is of interest for the cost reduction of nitrogen for use in industrial processes. Current devices may waste up to 30% of the gaseous nitrogen product by venting it to atmosphere. Furthermore, no attempt is made to recover the thermal energy available in the coldness of the cryogen. A seven step cycle with changing volumes and ambient heat addition is proposed, eliminating all product waste and providing the means of energy recovery from the nitrogen. This thesis discusses the new thermodynamic cycle and modeling as well as the mechanical design and testing of a prototype device. The prototype was able to achieve liquid nitrogen vaporization and pressurization up to 1000 psi, while full cycle validation is ongoing with promising initial results.

Diverse Responses of Belowground Internal Nitrogen Cycling to Increasing Aridity

NASA Astrophysics Data System (ADS)

Kou, D.; Peng, Y.; Wang, G.; Ding, J.; Chen, Y.; Yang, G.; Fang, K.; Liu, L.; Zhang, B.; Müller, C.; Zhang, J.; Yang, Y.

2017-12-01

Belowground microbial nitrogen (N) dynamics play key roles in regulating structure and function of terrestrial ecosystems, however, our understanding on their responses to global change remains limited. This gap is particularly true for drylands, which constitute the largest biome in terrestrial ecosystems and are sensitive to predicted increase in aridity. Here, responding patterns and controls of six gross N transformation rates were explored along an aridity gradient in Tibetan drylands. Our results showed that gross N rates responded diversely to the changing aridity. Both mineralization (MN) and ammonium immobilization (INH4) declined as aridity increased. Aridity affected MN through its association with plant cover, clay content, soil organic matter (SOM), dissolved organic nitrogen (DON) and total microbial biomass, while regulated INH4 mainly through its effects on SOM and NH4+. Autotrophic nitrification (ONH4) exhibited a bell-shaped pattern along the gradient with a tipping point at aridity index = 0.47. Such a pattern was induced by aridity effects on the abundance of ammonia oxidizing archaea (AOA) and ammonia supplying capacity. Different from above N transformations, rates of nitrate immobilization (INO3) and dissimilatory nitrate reduction to ammonium (DNRA) had no responses to changing aridity, largely regulated by soil DON availability and clay content, respectively. Overall, these results suggest that predicted increase in aridity will exert different effects on various soil internal N cycling processes. The diverse patterns point to different responses of ecosystem N cycle with respect to aridity, and thus potentially have profound impact on structure and function of dryland ecosystems.

Consequences of simulating terrestrial N dynamics for projecting future terrestrial C storage

NASA Astrophysics Data System (ADS)

Zaehle, S.; Friend, A. D.; Friedlingstein, P.

2009-04-01

We present results of a new land surface model, O-CN, which includes a process-based coupling between the terrestrial cycling of energy, water, carbon, and nitrogen. The model represents the controls of the terrestrial nitrogen (N) cycling on carbon (C) pools and fluxes through photosynthesis, respiration, changes in allocation patterns, as well as soil organic matter decomposition, and explicitly accounts for N leaching and gaseous losses. O-CN has been shown to give realistic results in comparison to observations at a wide range of scales, including in situ flux measurements, productivity databases, and atmospheric CO2 concentration data. Notably, O-CN simulates realistic responses of net primary productivity, foliage area, and foliage N content to elevated atmospheric [CO2] as evidenced at free air carbon dioxide enrichment (FACE) sites (Duke, Oak Ridge). We re-examine earlier model-based assessments of the terrestrial C sequestration potential using a global transient O-CN simulation driven by increases in atmospheric [CO2], N deposition and climatic changes over the 21st century. We find that accounting for terrestrial N cycling about halves the potential to store C in response to increases in atmospheric CO2 concentrations; mainly due to a reduction of the net C uptake in temperate and boreal forests. Nitrogen deposition partially alleviates the effect of N limitation, but is by far not sufficient to compensate for the effect completely. These findings underline the importance of an accurate representation of nutrient limitations in future projections of the terrestrial net CO2 exchanges and therefore land-climate feedback studies.

Nitrogen cycle and ecosystem services in the Brazilian La Plata Basin: anthropogenic influence and climate change.

PubMed

Watanabe, M; Ortega, E; Bergier, I; Silva, J S V

2012-08-01

The increasing human demand for food, raw material and energy has radically modified both the landscape and biogeochemical cycles in many river basins in the world. The interference of human activities on the Biosphere is so significant that it has doubled the amount of reactive nitrogen due to industrial fertiliser production (Haber-Bosch), fossil fuel burning and land-use change over the last century. In this context, the Brazilian La Plata Basin contributes to the alteration of the nitrogen cycle in South America because of its huge agricultural and grazing area that meets the demands of its large urban centres - Sao Paulo, for instance - and also external markets abroad. In this paper, we estimate the current inputs and outputs of anthropogenic nitrogen (in kg N.km(-2).yr(-1)) in the basin. In the results, we observe that soybean plays a very important role in the Brazilian La Plata, since it contributes with an annual entrance of about 1.8 TgN due to biological nitrogen fixation. Moreover, our estimate indicates that the export of soybean products accounts for roughly 1.0 TgN which is greater than the annual nitrogen riverine exports from Brazilian Parana, Paraguay and Uruguay rivers together. Complimentarily, we built future scenarios representing changes in the nitrogen cycle profile considering two scenarios of climate change for 2070-2100 (based on IPCC's A2 and B2) that will affect land-use, nitrogen inputs, and loss of such nutrients in the basin. Finally, we discuss how both scenarios will affect human well-being since there is a connection between nitrogen cycle and ecosystem services that affect local and global populations, such as food and fibre production and climate regulation.

Restoring the Nitrogen Cycle in the Boreal Forest - a Case Study from Northern Alberta

NASA Astrophysics Data System (ADS)

Masse, Jacynthe; Grayston, Sue; Prescott, Cindy; Quideau, Sylvie

2014-05-01

The Athabasca oil sands deposit, located in the boreal forests of Northern Alberta, is one of the largest single oil deposits in the world. This deposit rests underneath 40,200 square kilometres of land. To date, an area of about 715 square kilometres has been disturbed by oil sands mining activity (Government of Alberta, 2013). Following surface mining, companies have the legal obligation to restore soil-like profiles that can support the previous land capabilities (Powter et al., 2012). Because of its importance for site productivity, re-establishment of the nitrogen cycle between these reconstructed soils and plants is one of the most critical factors required to insure long term sustainability of reclaimed boreal landscape. High nitrogen deposition recorded in the oil sands area combined with the high level of nitrate found in reclaimed soils raised concerns about the possibility of these reclaimed soils being in early stages of N saturation (Laxton et al 2010; Hemsley, 2012), although little evidence of net nitrification in these reclaimed soils suggests the contrary (Laxton et al. 2012). To date, results on the behaviour of the nitrogen cycle in the reclaimed sites are contradictory. A systematic study of the nitrogen cycle, and especially rates of gross mineralization, nitrification and denitrification, is needed. Our research aimed at 1) measuring the gross rates of nitrogen transformations under different vegetation treatments in both reclaimed and naturally-disturbed (fire) sites and 2) characterizing the microbial communities participating in the nitrogen cycle within the same soils. A series of 20 soils, covering different vegetation treatments (plots planted with aspen (Populus tremuloides), spruce (Picea glauca) and grassland) were investigated. Gross nitrogen transformation rates were measured using 15N pool-dilution (Müller et al. 2007). Microbial communities participating in the N-cycle were characterized using qPCR and pyrosequencing. Differences between nitrogen cycling processes in the different vegetation treatments and in the naturally disturbed sites were found. The reasons for these variances will be discussed. The oil sands will be Canada's environmental legacy for the next several hundred years and recreating functional soils is fundamental to our ability to restore boreal ecosystems after disturbance.

Restoration using Azolla imbricata increases nitrogen functional bacterial groups and genes in soil.

PubMed

Lu, Xiao-Ming; Lu, Peng-Zhen; Yang, Ke

2017-05-01

Microbial groups are major factors that influence soil function. Currently, there is a lack of studies on microbial functional groups. Although soil microorganisms play an important role in the nitrogen cycle, systematic studies of the effects of environmental factors on microbial populations in relation to key metabolic processes in the nitrogen cycle are seldom reported. In this study, we conducted a systematic analysis of the changes in nitrogen functional groups in mandarin orange garden soil treated with Azolla imbricata. The structures of the major functional bacterial groups and the functional gene abundances involved in key processes of the soil nitrogen cycle were analyzed using high-throughput sequencing (HTS) and quantitative real-time PCR, respectively. The results indicated that returning A. imbricata had an important influence on the composition of soil nitrogen functional bacterial communities. Treatment with A. imbricata increased the diversity of the nitrogen functional bacteria. The abundances of nitrogen functional genes were significantly higher in the treated soil compared with the control soil. Both the diversity of the major nitrogen functional bacteria (nifH bacteria, nirK bacteria, and narG bacteria) and the abundances of nitrogen functional genes in the soil showed significant positive correlations with the soil pH, the organic carbon content, available nitrogen, available phosphorus, and NH 4 + -N and NO 3 - -N contents. Treatment with 12.5 kg fresh A. imbricata per mandarin orange tree was effective to improve the quality of the mandarin orange garden soil. This study analyzed the mechanism of the changes in functional bacterial groups and genes involved in key metabolic processes of the nitrogen cycle in soil treated by A. imbricata.

The influence of leaf-atmosphere NH3(g ) exchange on the isotopic composition of nitrogen in plants and the atmosphere.

PubMed

Johnson, Jennifer E; Berry, Joseph A

2013-10-01

The distribution of nitrogen isotopes in the biosphere has the potential to offer insights into the past, present and future of the nitrogen cycle, but it is challenging to unravel the processes controlling patterns of mixing and fractionation. We present a mathematical model describing a previously overlooked process: nitrogen isotope fractionation during leaf-atmosphere NH3(g ) exchange. The model predicts that when leaf-atmosphere exchange of NH3(g ) occurs in a closed system, the atmospheric reservoir of NH3(g ) equilibrates at a concentration equal to the ammonia compensation point and an isotopic composition 8.1‰ lighter than nitrogen in protein. In an open system, when atmospheric concentrations of NH3(g ) fall below or rise above the compensation point, protein can be isotopically enriched by net efflux of NH3(g ) or depleted by net uptake. Comparison of model output with existing measurements in the literature suggests that this process contributes to variation in the isotopic composition of nitrogen in plants as well as NH3(g ) in the atmosphere, and should be considered in future analyses of nitrogen isotope circulation. The matrix-based modelling approach that is introduced may be useful for quantifying isotope dynamics in other complex systems that can be described by first-order kinetics. © 2013 John Wiley & Sons Ltd.

Agricultural Nutrient Cycling at the Strawberry Creek Watershed: Insights Into Processes Using Stable Isotope Analysis

NASA Astrophysics Data System (ADS)

Thuss, E.; English, M. C.; Spoelstra, J.

2009-05-01

When nitrogen availability exceeds biological demand, excess nitrogen, especially nitrate, may subsequently pollute ground and surface water. Agricultural practices in Southern Ontario typically supplement soils with organic and inorganic nutrients to aid in crop development, and employ various management techniques to limit nutrient loss. Excess nitrogen has several potential fates, which are controlled by the net effects of numerous nitrogen cycling reactions in the soil that are often difficult to measure directly. Nitrogen cycling in soils is controlled in large part by soil moisture, as it affects microbial activity and soil redox conditions. Stable isotope geochemistry is a powerful tool that provides information on nitrogen sources and processes. This study uses crop nitrogen and carbon isotope ratios to provide insights into the net effects of soil nitrogen cycling and nitrogen fate. This research was conducted at the Strawberry Creek Watershed (SCW), an agricultural research watershed located between Kitchener-Waterloo and Guelph, Ontario. The SCW exhibits elevated nitrate concentrations in groundwater, tile discharge, and the stream itself. Previous isotopic work revealed that this nitrate is largely derived from chemical fertilizer and manure applications. Field-scale hydrological processes lead to areas where the fate of applied nitrogen differs, which has an isotopic effect on the residual nitrogen that is available to plants. Results of this study indicate significant patterns in the isotopic signature of plant tissue, in both temporal and spatial scales. At the plot-scale where soil conditions are similar, there is little to no variation in foliar isotope values, but at the field-scale there appears to be a significant amount of variability related to soil moisture and nitrogen loss. This relationship can potentially provide insight into ideal conditions for nitrogen uptake efficiency. Reducing agricultural nitrogen leaching to ground and surface water requires a better understanding of nitrogen fate in the soil zone, and will result in more effective agricultural nutrient management.

Genetics Home Reference: arginase deficiency

MedlinePlus

... occurs in liver cells. This cycle processes excess nitrogen, generated when protein is used by the body, ... the urea cycle, which produces urea by removing nitrogen from arginine. In people with arginase deficiency , arginase ...

Coupled cycling of dissolved organic nitrogen and carbon in a forest stream

Treesearch

E.N. Jack Brookshire; H. Maurice Valett; Steven A. Thomas; Jackson R. Webster

2005-01-01

Dissolved organic nitrogen (DON) is an abundant but poorly understood pool of N in many ecosystems. We assessed DON cycling in a N-limited headwater forest stream via whole-ecosystem additions of dissolved inorganic nitrogen (DIN) and labile dissolved organic matter (DOM), hydrologic transport and biogeochemical modeling, and laboratory experiments with native...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ruan, Leilei; Robertson, G. Philip

Throughout most of the northern hemisphere, snow cover decreased in almost every winter month from 1967 to 2012. Because snow is an effective insulator, snow cover loss has likely enhanced soil freezing and the frequency of soil freeze–thaw cycles, which can disrupt soil nitrogen dynamics including the production of nitrous oxide (N 2O). Here, we used replicated automated gas flux chambers deployed in an annual cropping system in the upper Midwest US for three winters (December–March, 2011–2013) to examine the effects of snow removal and additions on N 2O fluxes. Diminished snow cover resulted in increased N2O emissions each year;more » over the entire experiment, cumulative emissions in plots with snow removed were 69% higher than in ambient snow control plots and 95% higher than in plots that received additional snow (P < 0.001). Higher emissions coincided with a greater number of freeze–thaw cycles that broke up soil macroaggregates (250–8000 µm) and significantly increased soil inorganic nitrogen pools. We conclude that winters with less snow cover can be expected to accelerate N 2O fluxes from agricultural soils subject to wintertime freezing.« less

Glacial-Interglacial and Holocene N2O Stable Isotope Changes Constrain Terrestrial N Cycling

NASA Astrophysics Data System (ADS)

Schmitt, J.; Spahni, R.; Bock, M.; Seth, B.; Stocker, B. D.; Ri, X.; Schilt, A.; Brook, E.; Otto-Bliesner, B. L.; Liu, Z.; Prentice, I. C.; Fischer, H.; Joos, F.

2015-12-01

The land biosphere contributes most to the natural source of the long-lived greenhouse gas nitrous oxide (N2O), with N2O emissions being dependent on the turnover rate of both the terrestrial nitrogen (N) and carbon (C) cycle. The C:N stoichiometry of vegetation and soil organic matter links the cycles intimately. Sustained plant productivity increase must be supported by biological N fixation. Intensified N cycling in turn enhances N loss and thereby N2O emissions. The temporal and spatial dynamics of terrestrial N and C cycles and related terrestrial N2O emissions are poorly constrained over the glacial-interglacial transition and the Holocene. Here we reconstruct increased terrestrial N2O emissions since the Last Glacial Maximum based on N2O concentration and isotope measurements on several ice cores and show that this N2O increase can be explained by N cycle modelling - provided N fixation is allowed to respond dynamically to increasing N demand and turnover. The Ice core reconstructions suggest a deglacial increase of 1.1 ± 0.4 Tg N/yr in terrestrial and 0.6 ± 0.4 Tg/yr in oceanic N2O emissions, but relatively constant terrestrial emissions over the Holocene. Transient simulations with a Dynamic Global Vegetation Model are shown to represent the climate and CO2 induced changes in terrestrial N2O emission, and suggest a deglacial increase in biological N fixation by 20%, independently of its absolute magnitude. Deciphering the response of biological N fixation during climatic changes is an important factor for our understanding of plant growth and the land carbon sink, alongside anthropogenic greenhouse gas emissions.

Integrating terrestrial through aquatic processing of water, carbon and nitrogen over hot, cold and lukewarm moments in mixed land use catchments

NASA Astrophysics Data System (ADS)

Band, L. E.; Lin, L.; Duncan, J. M.

2017-12-01

A major challenge in understanding and managing freshwater volumes and quality in mixed land use catchments is the detailed heterogeneity of topography, soils, canopy, and inputs of water and biogeochemicals. The short space and time scale dynamics of sources, transport and processing of water, carbon and nitrogen in natural and built environments can have a strong influence on the timing and magnitude of watershed runoff and nutrient production, ecosystem cycling and export. Hydroclimate variability induces a functional interchange of terrestrial and aquatic environments across their transition zone with the temporal and spatial expansion and contraction of soil wetness, standing and flowing water over seasonal, diurnal and storm event time scales. Variation in sources and retention of nutrients at these scales need to be understood and represented to design optimal mitigation strategies. This paper discusses the conceptual framework used to design both simulation and measurement approaches, and explores these dynamics using an integrated terrestrial-aquatic watershed model of coupled water-carbon-nitrogen processes at resolutions necessary to resolve "hot spot/hot moment" phenomena in two well studied catchments in Long Term Ecological Research sites. The potential utility of this approach for design and assessment of urban green infrastructure and stream restoration strategies is illustrated.

BELOWGROUND NITROGEN UPTAKE AND ALLOCATION ...

EPA Pesticide Factsheets

Anthropogenic nitrogen inputs coupled with rising sea level complicate predictions of marsh stability. As marsh stability is a function of its vegetation, it is important to understand the mechanisms that drive community dynamics. Many studies have examined aboveground dynamics and nutrient cycling, but few have studied the belowground uptake and allocation of nitrogen. Literature suggests that D. spicata may dominate the marsh platform in nutrient-rich conditions, though the mechanism driving the vegetation shift is unclear. Our study examines belowground nutrient uptake and allocation underlying these patterns. To determine whether D. spicata is a more efficient scavenger of nutrients than S. alterniflora we performed a 15N pulse-chase experiment. Tracer was added to mesocosms growing D. spicata and S. alterniflora in monoculture. After the initial pulse, a subset of pots were sacrificed weekly and partitioned into detailed depth intervals for 15N analysis of several belowground pools: live coarse and fine roots, live rhizomes, dead organic matter, and bulk sediment. Comparisons between D. spicata and S. alterniflora uptake and allocation can explain mechanisms of competitive advantage and predictions of D. spicata dominance. Additionally, we used denitrification enzyme assays (DEA) and greenhouse gas slurries to quantify denitrification rates and potentials. Initial results suggest that the vegetation types support similar N-relevant microbial communities. Th

Carbon and nitrogen isotope variations in tree-rings as records of perturbations in regional carbon and nitrogen cycles.

PubMed

Bukata, Andrew R; Kyser, T Kurtis

2007-02-15

Increasing anthropogenic pollution from urban centers and fossil fuel combustion can impact the carbon and nitrogen cycles in forests. To assess the impact of twentieth century anthropogenic pollution on forested system carbon and nitrogen cycles, variations in the carbon and nitrogen isotopic compositions of tree-rings were measured. Individual annual growth rings in trees from six sites across Ontario and one in New Brunswick, Canada were used to develop site chronologies of tree-ring delta 15N and delta 13C values. Tree-ring 615N values were approximately 0.5% per hundred higher and correlated with contemporaneous foliar samples from the same tree, but not with delta 15N values of soil samples. Temporal trends in carbon and nitrogen isotopic compositions of these tree-rings are consistent with increasing anthropogenic influence on both the carbon and nitrogen cycles since 1945. Tree-ring delta 13C values and delta 15N values are correlated at both remote and urban-proximal sites, with delta 15N values decreasing since 1945 and converging on 1% per hundred at urban-proximal sites and decreasing but not converging on a single delta 15N value in remote sites. These results indicate that temporal trends in tree-ring nitrogen and carbon isotopic compositions record the regional extent of pollution.

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone.

PubMed

Lüke, Claudia; Speth, Daan R; Kox, Martine A R; Villanueva, Laura; Jetten, Mike S M

2016-01-01

Oxygen minimum zones (OMZ) are areas in the global ocean where oxygen concentrations drop to below one percent. Low oxygen concentrations allow alternative respiration with nitrate and nitrite as electron acceptor to become prevalent in these areas, making them main contributors to oceanic nitrogen loss. The contribution of anammox and denitrification to nitrogen loss seems to vary in different OMZs. In the Arabian Sea, both processes were reported. Here, we performed a metagenomics study of the upper and core zone of the Arabian Sea OMZ, to provide a comprehensive overview of the genetic potential for nitrogen and methane cycling. We propose that aerobic ammonium oxidation is carried out by a diverse community of Thaumarchaeota in the upper zone of the OMZ, whereas a low diversity of Scalindua-like anammox bacteria contribute significantly to nitrogen loss in the core zone. Aerobic nitrite oxidation in the OMZ seems to be performed by Nitrospina spp. and a novel lineage of nitrite oxidizing organisms that is present in roughly equal abundance as Nitrospina. Dissimilatory nitrate reduction to ammonia (DNRA) can be carried out by yet unknown microorganisms harbouring a divergent nrfA gene. The metagenomes do not provide conclusive evidence for active methane cycling; however, a low abundance of novel alkane monooxygenase diversity was detected. Taken together, our approach confirmed the genomic potential for an active nitrogen cycle in the Arabian Sea and allowed detection of hitherto overlooked lineages of carbon and nitrogen cycle bacteria.

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone

PubMed Central

Kox, Martine A.R.; Villanueva, Laura; Jetten, Mike S.M.

2016-01-01

Oxygen minimum zones (OMZ) are areas in the global ocean where oxygen concentrations drop to below one percent. Low oxygen concentrations allow alternative respiration with nitrate and nitrite as electron acceptor to become prevalent in these areas, making them main contributors to oceanic nitrogen loss. The contribution of anammox and denitrification to nitrogen loss seems to vary in different OMZs. In the Arabian Sea, both processes were reported. Here, we performed a metagenomics study of the upper and core zone of the Arabian Sea OMZ, to provide a comprehensive overview of the genetic potential for nitrogen and methane cycling. We propose that aerobic ammonium oxidation is carried out by a diverse community of Thaumarchaeota in the upper zone of the OMZ, whereas a low diversity of Scalindua-like anammox bacteria contribute significantly to nitrogen loss in the core zone. Aerobic nitrite oxidation in the OMZ seems to be performed by Nitrospina spp. and a novel lineage of nitrite oxidizing organisms that is present in roughly equal abundance as Nitrospina. Dissimilatory nitrate reduction to ammonia (DNRA) can be carried out by yet unknown microorganisms harbouring a divergent nrfA gene. The metagenomes do not provide conclusive evidence for active methane cycling; however, a low abundance of novel alkane monooxygenase diversity was detected. Taken together, our approach confirmed the genomic potential for an active nitrogen cycle in the Arabian Sea and allowed detection of hitherto overlooked lineages of carbon and nitrogen cycle bacteria. PMID:27077014

Cost-Effectiveness of Nitrogen Mitigation by Alternative ...

EPA Pesticide Factsheets

Household wastewater, especially from conventional septic systems, is a major contributor to nitrogen pollution. Alternative household wastewater management technologies provide similar sewerage management services but their life cycle costs and nitrogen flow implications remain uncertain. We seek to address two key questions: (1) what are the total costs, nitrogen mitigation potential, and cost-effectiveness of a range of conventional and alternative municipal wastewater treatment technologies, and (2) what uncertainties influence these outcomes, and how can we improve our understanding of these technologies? We estimate a household nitrogen mass balance for various household wastewater treatment systems and combine this mass balance with life cycle cost assessment to calculate the cost-effectiveness of nitrogen mitigation, which we define as nitrogen removed from the local watershed. We apply our methods to Falmouth, MA, where failing septic systems have caused heightened eutrophication in local receiving water bodies. We find that flushing and dry (composting) urine-diversion toilets paired with conventional septic systems for greywater management demonstrate the lowest life cycle cost and highest cost-effectiveness (dollars per kilogram of nitrogen removed from the watershed). Composting toilets and neighborhood-scale blackwater digesters are also attractive options in some cases, particularly best-case nitrogen mitigation; innovative/advanced septic system

40 CFR Table 3 to Subpart Ooo of... - Batch Process Vent Monitoring Requirements

Code of Federal Regulations, 2013 CFR

2013-07-01

...) temperature Continuous records as specified in § 63.1416(d). a Carbon adsorber a Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle...

40 CFR Table 3 to Subpart Ooo of... - Batch Process Vent Monitoring Requirements

Code of Federal Regulations, 2014 CFR

2014-07-01

...) temperature Continuous records as specified in § 63.1416(d). a Carbon adsorber a Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle...

Aggregated filter-feeding consumers alter nutrient limitation: consequences for ecosystem and community dynamics.

PubMed

Atkinson, Carla L; Vaughn, Caryn C; Forshay, Kenneth J; Cooper, Joshua T

2013-06-01

Nutrient cycling is a key process linking organisms in ecosystems. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of different elements are interdependent because the organisms that drive these cycles require fixed ratios of nutrients. There is growing recognition that animals play an important role in biogeochemical cycling across ecosystems. In particular, dense aggregations of consumers can create biogeochemical hotspots in aquatic ecosystems via nutrient translocation. We predicted that filter-feeding freshwater mussels, which occur as speciose, high-biomass aggregates, would create biogeochemical hotspots in streams by altering nutrient limitation and algal dynamics. In a field study, we manipulated nitrogen and phosphorus using nutrient-diffusing substrates in areas with high and low mussel abundance, recorded algal growth and community composition, and determined in situ mussel excretion stoichiometry at 18 sites in three rivers (Kiamichi, Little, and Mountain Fork Rivers, south-central United States). Our results indicate that mussels greatly influence ecosystem processes by modifying the nutrients that limit primary productivity. Sites without mussels were N-limited with -26% higher relative abundances of N-fixing blue-green algae, while sites with high mussel densities were co-limited (N and P) and dominated by diatoms. These results corroborated the results of our excretion experiments; our path analysis indicated that mussel excretion has a strong influence on stream water column N:P. Due to the high N:P of mussel excretion, strict N-limitation was alleviated, and the system switched to being co-limited by both N and P. This shows that translocation of nutrients by mussel aggregations is important to nutrient dynamics and algal species composition in these rivers. Our study highlights the importance of consumers and this imperiled faunal group on nutrient cycling and community dynamics in aquatic ecosystems.

Effect of operational cycle time length on nitrogen removal in an alternating oxidation ditch system.

PubMed

Mantziaras, I D; Stamou, A; Katsiri, A

2011-06-01

This paper refers to nitrogen removal optimization of an alternating oxidation ditch system through the use of a mathematical model and pilot testing. The pilot system where measurements have been made has a total volume of 120 m(3) and consists of two ditches operating in four phases during one cycle and performs carbon oxidation, nitrification, denitrification and settling. The mathematical model consists of one-dimensional mass balance (convection-dispersion) equations based on the IAWPRC ASM 1 model. After the calibration and verification of the model, simulation system performance was made. Optimization is achieved by testing operational cycles and phases with different time lengths. The limits of EU directive 91/271 for nitrogen removal have been used for comparison. The findings show that operational cycles with smaller time lengths can achieve higher nitrogen removals and that an "equilibrium" between phase time percentages in the whole cycle, for a given inflow, must be achieved.

Bottom-up synthesis of nitrogen-doped graphene sheets for ultrafast lithium storage

NASA Astrophysics Data System (ADS)

Tian, Lei-Lei; Wei, Xian-Yong; Zhuang, Quan-Chao; Jiang, Chen-Hui; Wu, Chao; Ma, Guang-Yao; Zhao, Xing; Zong, Zhi-Min; Sun, Shi-Gang

2014-05-01

A facile bottom-up strategy was developed to fabricate nitrogen-doped graphene sheets (NGSs) from glucose using a sacrificial template synthesis method. Three main types of nitrogen dopants (pyridinic, pyrrolic and graphitic nitrogens) were introduced into the graphene lattice, and an inimitable microporous structure of NGS with a high specific surface area of 504 m2 g-1 was obtained. Particularly, with hybrid features of lithium ion batteries and Faradic capacitors at a low rate and features of Faradic capacitors at a high rate, the NGS presents a superior lithium storage performance. During electrochemical cycling, the NGS electrode afforded an enhanced reversible capacity of 832.4 mA h g-1 at 100 mA g-1 and an excellent cycling stability of 750.7 mA h g-1 after 108 discharge-charge cycles. Furthermore, an astonishing rate capability of 333 mA h g-1 at 10 000 mA g-1 and a high rate cycle performance of 280.6 mA h g-1 even after 1200 cycles were also achieved, highlighting the significance of nitrogen doping on the maximum utilization of graphene-based materials for advanced lithium storage.

Combustion dynamics in liquid rocket engines

NASA Technical Reports Server (NTRS)

Mclain, W. H.

1971-01-01

A chemical analysis of the emission and absorption spectra in the combustion chamber of a nitrogen tetroxide/aerozine-50 rocket engine was conducted. Measurements were made under conditions of preignition, ignition, and post combustion operating periods. The cause of severe ignition overpressures sporadically observed during the vacuum startup of the Apollo reaction control system engine was investigated. The extent to which residual propellants or condensed intermediate reaction products remain after the engine has been operated in a pulse mode duty cycle was determined.

Nitrogen cycling in the soil-plant system along a series of coral islands affected by seabirds in the South China Sea.

PubMed

Wu, Libin; Liu, Xiaodong; Fang, Yunting; Hou, Shengjie; Xu, Liqiang; Wang, Xueying; Fu, Pingqing

2018-06-15

The nitrogen (N) utilization strategy of plants has become a topic of interest within the field of phytoecology. However, few studies have considered N cycling on coral island ecosystems from the perspective of their evolution. The aim of this study was to test the impacts of biological transport by seabirds, on the sources and uses of N by plants, and pathways of N cycling in soil-plant ecosystems on coral islands. A series of eight coral islands were investigated, five of which were affected to a varying extent by seabirds. The total phosphorus (TP) concentration from avian sources and the δ 15 N values of total nitrogen (TN) and inorganic nitrogen (IN: NH 4 + -N, and NO 3 - -N), δ 18 O of NO 3 - -O, in soils were determined, as well as proxies in plant leaves of two dominant plant species, including TN, the carbon/nitrogen ratio (C/N), and δ 13 C and δ 15 N values. The results show that, with an increase of TP, the TN and IN content, and δ 15 N values in soils all increased. Plant C/N and δ 15 N values decreased and increased, respectively, as the soil N content increased. When the TN content of the soil was low, the δ 15 N value in plant leaves was similar to that in soil NO 3 - , but was much lower than that in soil NH 4 + . When the soil TN content was high, the δ 15 N values were similar. Both plants and soil were probably N-limited prior to seabird colonization, with the N source on the barren coral islands originating primarily from atmospheric deposition. With seabird guano input and subsequent pedogenesis, the source of N switched to guano. Under these conditions, most of the N utilized by plants originated from NH 4 + , while nitrate is dominant for non-seabirds islands. Seabird activities have played a key role in the N dynamics of soil-plant ecosystems at coral islands. Copyright © 2018 Elsevier B.V. All rights reserved.

Dynamic Biological Functioning Important for Simulating and Stabilizing Ocean Biogeochemistry

NASA Astrophysics Data System (ADS)

Buchanan, P. J.; Matear, R. J.; Chase, Z.; Phipps, S. J.; Bindoff, N. L.

2018-04-01

The biogeochemistry of the ocean exerts a strong influence on the climate by modulating atmospheric greenhouse gases. In turn, ocean biogeochemistry depends on numerous physical and biological processes that change over space and time. Accurately simulating these processes is fundamental for accurately simulating the ocean's role within the climate. However, our simulation of these processes is often simplistic, despite a growing understanding of underlying biological dynamics. Here we explore how new parameterizations of biological processes affect simulated biogeochemical properties in a global ocean model. We combine 6 different physical realizations with 6 different biogeochemical parameterizations (36 unique ocean states). The biogeochemical parameterizations, all previously published, aim to more accurately represent the response of ocean biology to changing physical conditions. We make three major findings. First, oxygen, carbon, alkalinity, and phosphate fields are more sensitive to changes in the ocean's physical state. Only nitrate is more sensitive to changes in biological processes, and we suggest that assessment protocols for ocean biogeochemical models formally include the marine nitrogen cycle to assess their performance. Second, we show that dynamic variations in the production, remineralization, and stoichiometry of organic matter in response to changing environmental conditions benefit the simulation of ocean biogeochemistry. Third, dynamic biological functioning reduces the sensitivity of biogeochemical properties to physical change. Carbon and nitrogen inventories were 50% and 20% less sensitive to physical changes, respectively, in simulations that incorporated dynamic biological functioning. These results highlight the importance of a dynamic biology for ocean properties and climate.

Profiling Hyporheic Microbial Community Nitrogen Cycle and Carbohydrate Active Enzyme Gene Abundances across Seasons

NASA Astrophysics Data System (ADS)

Nelson, W. C.; Graham, E.; Stegen, J.

2016-12-01

The hyporheic zone (HZ) is the permanently inundated sediment layer between a surface channel and adjacent groundwater-saturated sediments. It has been hypothesized to play a major role in macronutrient (C, N, P) cycling in rivers. The correlation between community taxonomic composition dynamics and functional gene representation is poorly understood for hyporheic communities. To explore how microbial communities respond to temporal changes in environmental conditions, metagenomes were derived from communities captured in sterile sandpacks deployed within the HZ of the Columbia River. HMM databases were used to enumerate protein families present. Functional classification of reads allowed a general assessment of community function over time, while targeted assembly of specific genes enabled investigation of the diversity of organisms encoding these functions. Preliminary analysis of nitrogen cycle pathways shows most gene families examined to have quite steady representation across seasons, with most observed changes being less than an order of magnitude. Analysis of ammonia oxidation genes showed bacterial ammonia oxidizers (AOB) to be stably present across the year, while the archaeal amoA gene increased in late summer, peaking sharply in November, mirroring results from 16S rRNA amplicon analysis which showed an increase in Thaumarcheal OTUs during that same period. Most glycosyl hydrolase GH families had low representation. Highly abundant classes of GH included the GH94 (beta-glucosidase), GH95 (1-2-alpha-L-fucosidase) and GH103 (lytic transglycosylase) families, suggesting activity on plant, fungus and insect polysaccharides and peptidoglycans. Further work is investigating the taxonomy of the sequences identified, to determine how changes in the community composition contribute to the stable gene family profiles observed. These results are intended to work towards a greater understanding of the role of species diversity and functional redundancy in the dynamics of community composition in response to changes in environmental conditions and stochastic processes. In addition, it will serve as a foundation enabling modeling of generalized microbial function in the hyporheic zone, improving our ability to predict fluxes of carbon and nitrogen through riverine systems.

Isotopic composition of skeleton-bound organic nitrogen in reef-building symbiotic corals: A new method and proxy evaluation at Bermuda

NASA Astrophysics Data System (ADS)

Wang, X. T.; Sigman, D. M.; Cohen, A. L.; Sinclair, D. J.; Sherrell, R. M.; Weigand, M. A.; Erler, D. V.; Ren, H.

2015-01-01

The skeleton-bound organic nitrogen in reef-building symbiotic corals may be a high-resolution archive of ocean nitrogen cycle dynamics and a tool for understanding coral biogeochemistry and physiological processes. However, the existing methods for measuring the isotopic composition of coral skeleton-bound organic nitrogen (hereafter, CS-δ15N) either require too much skeleton material or have low precision, limiting the applications of this relatively new proxy. In addition, the controlling factors on CS-δ15N remain poorly understood: the δ15N of source nitrogen and the internal nitrogen cycle of the coral/zooxanthellae symbiosis may both be important. Here, we describe a new ("persulfate/denitrifier"-based) method for measuring CS-δ15N, requiring only 5 mg of skeleton material and yielding a long-term precision better than 0.2‰ (1σ). Using this new method, we investigate CS-δ15N at Bermuda. Ten modern Diploria labyrinthiformis coral cores/colonies from 4 sampling sites were measured for CS-δ15N. Nitrogen concentrations (nitrate + nitrite, ammonium, and dissolved organic nitrogen) and δ15N of plankton were also measured at these coral sites. Among the 4 sampling sites, CS-δ15N shows an increase with proximity to the island, from ∼3.8‰ to ∼6.8‰ vs. atmospheric N2, with the northern offshore site having a CS-δ15N 1-2‰ higher than the δ15N of thermocline nitrate in the surrounding Sargasso Sea. Two annually resolved CS-δ15N time series suggest that the offshore-inshore CS-δ15N gradient has persisted since at least the 1970s. Plankton δ15N among these 4 sites also has an inshore increase, but of only ∼1‰. Coral physiological change must explain the remaining (∼2‰) inshore increase in CS-δ15N, and previous work points to the coral/zooxanthellae N cycle as a control on host tissue (and thus carbonate skeletal) δ15N. The CS-δ15N gradient is hypothesized to result mainly from varying efficiency in the internal nitrogen recycling of the coral/zooxanthellae symbiosis. It is proposed that, in more productive inshore waters, greater food uptake by the coral causes a greater fraction of its low-δ15N regenerated ammonium to be excreted rather than assimilated by zooxanthellae, raising the δ15N of the inshore corals. If so, coral tissue- and CS-δ15N may prove of use to reconstruct and monitor the state of the coral/zooxanthellae symbiosis over space and time.

Changes in Chesapeake Bay Hypoxia over the Past Century

NASA Astrophysics Data System (ADS)

Friedrichs, M. A.; Kaufman, D. E.; Najjar, R.; Tian, H.; Zhang, B.; Yao, Y.

2016-02-01

The Chesapeake Bay, one of the world's largest estuaries, is among the many coastal systems where hypoxia is a major concern and where dissolved oxygen thus represents a critical factor in determining the health of the Bay's ecosystem. Over the past century, the population of the Chesapeake Bay region has almost quadrupled, greatly modifying land cover and management practices within the watershed. Simultaneously, the Chesapeake Bay has been experiencing a high degree of climate change, including increases in temperature, precipitation, and precipitation intensity. Together, these changes have resulted in significantly increased riverine nutrient inputs to the Bay. In order to examine how interdecadal changes in riverine nitrogen input affects biogeochemical cycling and dissolved oxygen concentrations in Chesapeake Bay, a land-estuarine-ocean biogeochemical modeling system has been developed for this region. Riverine inputs of nitrogen to the Bay are computed from a terrestrial ecosystem model (the Dynamic Land Ecosystem Model; DLEM) that resolves riverine discharge variability on scales of days to years. This temporally varying discharge is then used as input to the estuarine-carbon-biogeochemical model embedded in the Regional Modeling System (ROMS), which provides estimates of the oxygen concentrations and nitrogen fluxes within the Bay as well as advective exports from the Bay to the adjacent Mid-Atlantic Bight shelf. Simulation results from this linked modeling system for the present (early 2000s) have been extensively evaluated with in situ and remotely sensed data. Longer-term simulations are used to isolate the effect of increased riverine nitrogen loading on dissolved oxygen concentrations and biogeochemical cycling within the Chesapeake Bay.

Sliding mode observer for proton exchange membrane fuel cell: automotive application

NASA Astrophysics Data System (ADS)

Piffard, Maxime; Gerard, Mathias; Fonseca, Ramon Da; Massioni, Paolo; Bideaux, Eric

2018-06-01

This work proposes a state observer as a tool to manage cost and durability issues for PEMFC (Proton Exchange Membrane Fuel Cell) in automotive applications. Based on a dead-end anode architecture, the observer estimates the nitrogen build-up in the anode side, as well as relative humidities in the channels. These estimated parameters can then be used at fuel cell management level to enhance the durability of the stack. This observer is based on transport equations through the membrane and it reconstructs the behavior of the water and nitrogen inside the channels without the need of additional humidity sensors to correct the estimate. The convergence of the output variables is proved with Lyapunov theory for dynamic operating conditions. The validation is made with a high-fidelity model running a WLTC (Worldwide harmonized Light vehicles Test Cycle). This observer provides the average values of nitrogen and relative humidities with sufficient precision to be used in a global real-time control scheme.

Nutrient budgets in the subtropical ocean gyres dominated by lateral transport

NASA Astrophysics Data System (ADS)

Letscher, Robert T.; Primeau, François; Moore, J. Keith

2016-11-01

Ocean circulation replenishes surface nutrients depleted by biological production and export. Vertical processes are thought to dominate, but estimated vertical nutrient fluxes are insufficient to explain observed net productivity in the subtropical ocean gyres. Lateral inputs help balance the North Atlantic nutrient budget, but their importance for other gyres has not been demonstrated. Here we use an ocean model that couples circulation and ecosystem dynamics to show that lateral transport and biological uptake of inorganic and organic forms of nitrogen and phosphorus from the gyre margins exceeds the vertical delivery of nutrients, supplying 24-36% of the nitrogen and 44-67% of the phosphorus required to close gyre nutrient budgets. At the Bermuda and Hawaii time-series sites, nearly half of the annual lateral supply by lateral transport occurs during the summer-to-fall stratified period, helping explain seasonal patterns of inorganic carbon drawdown and nitrogen fixation. Our study confirms the importance of upper-ocean lateral nutrient transport for understanding the biological cycles of carbon and nutrients in the ocean's largest biome.

Remote sensing of canopy chemistry and nitrogen cycling in temperate forest ecosystems

NASA Technical Reports Server (NTRS)

Wessman, Carol A.; Aber, John D.; Peterson, David L.; Melillo, Jerry M.

1988-01-01

The use of images acquired by the Airborne Imaging Spectrometer, an experimental high-spectral resolution imaging sensor developed by NASA, to estimate the lignin concentration of whole forest canopies in Wisconsin is reported. The observed strong relationship between canopy lignin concentration and nitrogen availability in seven undisturbed forest ecosystems on Blackhawk Island, Wisconsin, suggests that canopy lignin may serve as an index for site nitrogen status. This predictive relationship presents the opportunity to estimate nitrogen-cycling rates across forested landscapes through remote sensing.

A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles.

PubMed

Louyakis, Artemis S; Gourlé, Hadrien; Casaburi, Giorgio; Bonjawo, Rachelle M E; Duscher, Alexandrea A; Foster, Jamie S

2018-02-01

Microbialites are one of the oldest known ecosystems on Earth and the coordinated metabolisms and activities of these mineral-depositing communities have had a profound impact on the habitability of the planet. Despite efforts to understand the diversity and metabolic potential of these systems, there has not been a systematic molecular analysis of the transcriptional changes that occur within a living microbialite over time. In this study, we generated metatranscriptomic libraries from actively growing thrombolites, a type of microbialite, throughout diel and seasonal cycles and observed dynamic shifts in the population and metabolic transcriptional activity. The most transcribed genes in all seasons were associated with photosynthesis, but only transcripts associated with photosystem II exhibited diel cycling. Photosystem I transcripts were constitutively expressed at all time points including midnight and sunrise. Transcripts associated with nitrogen fixation, methanogenesis and dissimilatory sulfate reduction exhibited diel cycling, and variability between seasons. Networking analysis of the metatranscriptomes showed correlated expression patterns helping to elucidate how metabolic interactions are coordinated within the thrombolite community. These findings have identified distinctive temporal patterns within the thrombolites and will serve an important foundation to understand the mechanisms by which these communities form and respond to changes in their environment. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

The Effect of Temperature on Key Aspects of the Nitrogen Cycle: Comparisons Across Systems

NASA Astrophysics Data System (ADS)

Warren, V.

2016-02-01

The nitrogen cycle sustains life by converting inert di-nitrogen gas (N2) into fixed bio-available forms (e.g. ammonium, nitrate), as well as returning it via gases such as N2 and nitrous oxide (N2O) back into the atmosphere. Recently, the effects of long term warming on key components of the carbon cycle, which is tightly coupled to the nitrogen cycle, have been highlighted but how global warming might systematically affect the balance of the nitrogen cycle is still largely unknown. The effect of long term warming on denitrification and nitrification were investigated using long-term, experimental mesocosm (2006 to present), allowing us to study the effect of warming on natural communities of bacteria involved in these processes. Denitrification activity responded to warming in the short-term in a predictable way, however, long-term moderate warming of 3-5oC (the predicted global increase by the end of the century) increased the specific activity of the sediment and had a pronounced effect on the ratio of N2O to N2. The latter suggesting that with sustained warming, denitrifying bacteria become more efficient at complete denitrification. Molecular analysis of denitrifying communities in our long-term mesocosm experiment also suggested a profound alteration of the communities underlying these differences in process. Similar short-term experiments were carried out on sediments and the water column of the North Eastern Tropical Pacific Oxygen minimum zone (NETP OMZ) including its effect on N2 fixation and here we contrast the findings from those markedly different settings. This research has indicated that we may see similar effects on the nitrogen cycle as we have previously determined in the carbon cycle, with the balance of N-species consumed and created becoming out of balance.

Boron- and nitrogen-doped reduced graphene oxide coated separators for high-performance Li-S batteries

NASA Astrophysics Data System (ADS)

Han, Pauline; Manthiram, Arumugam

2017-11-01

Lithium-sulfur (Li-S) batteries are regarded as a potential next-generation energy storage system but they are hampered by low active-material utilization, polysulfide shuttling, and rapid capacity fade. We present here the use of lightweight boron- and nitrogen-doped reduced graphene oxide (B-rGO, N-rGO) coated separators to suppress polysulfide diffusion and enhance active material utilization at high sulfur contents. B-rGO and N-rGO are synthesized through a facile modified Hummer's method involving the exfoliation of graphite sheets. Upon reduction, the carbon forms valuable interlayers with dynamic spacings for polysulfide trapping. Freeze-drying is utilized to preserve the structure of the pillow-like carbon, which is then slurry-coated onto a separator and placed against a sulfur cathode. The advantages of boron and nitrogen and their affinity towards polysulfides is compared while noting the lighter carbon coatings with good electrochemical stability. The cells attain a loading of 4.0 mg cm-2 with a high sulfur content of 66.5 ± 0.5 wt % on including the weight of the coatings. After a long cycle life of 400 cycles, N-rGO and B-rGO are still able to maintain a specific capacity of, respectively, 430 mA h g-1 and 367 mA h g-1.

[Ammonia-oxidizing archaea and their important roles in nitrogen biogeochemical cycling: a review].

PubMed

Liu, Jing-Jing; Wu, Wei-Xiang; Ding, Ying; Shi, De-Zhi; Chen, Ying-Xu

2010-08-01

As the first step of nitrification, ammonia oxidation is the key process in global nitrogen biogeochemical cycling. So far, the autotrophic ammonia-oxidizing bacteria (AOB) in the beta- and gamma-subgroups of proteobacteria have been considered as the most important contributors to ammonia oxidation, but the recent researches indicated that ammonia-oxidizing archaea (AOA) are widely distributed in various kinds of ecosystems and quantitatively predominant, playing important roles in the global nitrogen biogeochemical cycling. This paper reviewed the morphological, physiological, and ecological characteristics and the molecular phylogenies of AOA, and compared and analyzed the differences and similarities of the ammonia monooxygenase (AMO) and its encoding genes between AOA and AOB. In addition, the potential significant roles of AOA in nitrogen biogeochemical cycling in aquatic and terrestrial ecosystems were summarized, and the future research directions of AOA in applied ecology and environmental protection were put forward.

Consistent differences between tropical forest and savanna nitrogen cycling characteristics as inferred by leaf and soil 15N/14N ratios across three continents

NASA Astrophysics Data System (ADS)

Schrodt, Franziska

2017-04-01

The ratio of 15N:14N can act as important indicator of ecosystem Nitrogen cycling and thus essential key ecosystem processes. Although evidence for general patterns accumulates across the globe, such as foliar δ15N decreasing with increasing mean annual precipitation and decreasing mean annual temperature, as well as forests generally having a more open Nitrogen cycle, a comprehensive understanding of the Nitrogen cycle in tropical ecosystems is still lacking. We present data on foliar and soil δ15N from 62 permanent sampling plots in tropical zones of transition - area where forest and savanna coexists under similar macro climatic conditions - across South America, Africa and Australia. After controlling for phylogeny and location, we show that δ15N relationships in tropical forests and Savannah are consistent irrespective of precipitation.

40 CFR Table 3 to Subpart Ooo of... - Batch Process Vent Monitoring Requirements

Code of Federal Regulations, 2012 CFR

2012-07-01

... specified in § 63.1416(d). a Carbon adsorber a Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. Temperature of the carbon bed...

40 CFR Table 3 to Subpart Ooo of... - Batch Process Vent Monitoring Requirements

Code of Federal Regulations, 2010 CFR

2010-07-01

... specified in § 63.1416(d). a Carbon adsorber a Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. Temperature of the carbon bed...

40 CFR Table 3 to Subpart Ooo of... - Batch Process Vent Monitoring Requirements

Code of Federal Regulations, 2011 CFR

2011-07-01

... specified in § 63.1416(d). a Carbon adsorber a Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. Temperature of the carbon bed...

Soil nitrogen cycling and availability are linked to ammonia oxidizer abundance across a tropical mean annual temperature gradient

NASA Astrophysics Data System (ADS)

Pierre, S.; Litton, C. M.; Giardina, C. P.; Sparks, J. P.; Groffman, P.; Hewson, I.; Fahey, T.

2016-12-01

Interactions among environmental variables can obfuscate the primary drivers linking soil microbial community function to ecosystem biogeochemistry. These connections are important to understand in order to predict ecosystem responses to global climate change. In particular, the role of mean annual temperature (MAT) in regulating carbon (C) and nitrogen (N) cycling via microbial communities remains unclear. To study these dynamics in situ, we used a a natural elevation gradient of tropical wet montane forest on Mauna Kea, Hawai'i with established permanent plots. Across the gradient, environmental variables besides MAT remain constant. We studied the abundance and activity of the amoA gene, which regulates the rate-limiting step of nitrification, in ammonia oxidizing archaea (AOA) and bacteria (AOB) with relation to N availability and cycling across increasing MAT. Our results show that the abundance of amoA is positively correlated with MAT (p<0.05; r2=0.34) and that MAT and amoA abundance are the primary predictors of nitrate (NO3-) bioavailability (p<0.05). We also found that the relative expression of amoA (cDNA/DNA) is not correlated with MAT or potential net nitrification rate. Our results indicate the direct role of MAT in ammonia oxidizer community structure and demonstrate feedbacks to nutrient availability in forest systems. These findings suggest that forest primary production and carbon cycling may be affected by AOA and AOB responses to rising MAT.

Gene-centric approach to integrating environmental genomics and biogeochemical models.

PubMed

Reed, Daniel C; Algar, Christopher K; Huber, Julie A; Dick, Gregory J

2014-02-04

Rapid advances in molecular microbial ecology have yielded an unprecedented amount of data about the evolutionary relationships and functional traits of microbial communities that regulate global geochemical cycles. Biogeochemical models, however, are trailing in the wake of the environmental genomics revolution, and such models rarely incorporate explicit representations of bacteria and archaea, nor are they compatible with nucleic acid or protein sequence data. Here, we present a functional gene-based framework for describing microbial communities in biogeochemical models by incorporating genomics data to provide predictions that are readily testable. To demonstrate the approach in practice, nitrogen cycling in the Arabian Sea oxygen minimum zone (OMZ) was modeled to examine key questions about cryptic sulfur cycling and dinitrogen production pathways in OMZs. Simulations support previous assertions that denitrification dominates over anammox in the central Arabian Sea, which has important implications for the loss of fixed nitrogen from the oceans. Furthermore, cryptic sulfur cycling was shown to attenuate the secondary nitrite maximum often observed in OMZs owing to changes in the composition of the chemolithoautotrophic community and dominant metabolic pathways. Results underscore the need to explicitly integrate microbes into biogeochemical models rather than just the metabolisms they mediate. By directly linking geochemical dynamics to the genetic composition of microbial communities, the method provides a framework for achieving mechanistic insights into patterns and biogeochemical consequences of marine microbes. Such an approach is critical for informing our understanding of the key role microbes play in modulating Earth's biogeochemistry.

Simulation of water flow and nitrogen transport for a Bulgarian experimental plot using SWAP and ANIMO models.

PubMed

Marinov, Dimitar; Querner, Erik; Roelsma, Jan

2005-04-01

Unsaturated zone models are useful tools in predicting effects of measures and can be used to optimise agricultural practice aiming to minimise the impact on the environment. However, current soil models have a varying degree of abstraction level referring to simulated processes in time and space. In the framework of an EU funded project the SWAP (Soil-Water-Atmosphere-Plant) and ANIMO (Agricultural-Nutrient-Model) models were tested for an experimental arable plot in Bulgaria. SWAP was used to simulate water flow in the soil while ANIMO describes nitrogen movement and transformations. The objectives of this study are: (i) to show results of the combined application of water and nitrogen dynamics of originally Dutch models SWAP and ANIMO for specific Bulgarian soil and hydrological conditions; (ii) to calibrate and evaluate SWAP and ANIMO models by comparing numerical results with field measurements collected for an arable field in western Bulgaria and (iii) to analyse possible contamination of groundwater due to agricultural practice in the considered region. Further a short description of the experimental plot, as well as information about parameters of the investigated soil profiles, is provided. The obtained SWAP results evidenced that the model gives sufficient adaptation for soil water dynamics. The simulations of ANIMO for nitrogen cycle show greater divergence with observations but are satisfactory precise for the purposes of assessing land use impact on groundwater quality. In general, differences between model results and field measurements do not exceed 10-15%. For the experimental plot predictions indicate nitrate-N concentrations less then 5 mg/l in deeper soil compartments and low downward annual flux containing 0.133 kg N/ha. These results indicate that there is no serious pollution of the shallow groundwater table by nitrogen resulting from land use and agricultural activities.

Dynamic Modeling of ALS Systems

NASA Technical Reports Server (NTRS)

Jones, Harry

2002-01-01

The purpose of dynamic modeling and simulation of Advanced Life Support (ALS) systems is to help design them. Static steady state systems analysis provides basic information and is necessary to guide dynamic modeling, but static analysis is not sufficient to design and compare systems. ALS systems must respond to external input variations and internal off-nominal behavior. Buffer sizing, resupply scheduling, failure response, and control system design are aspects of dynamic system design. We develop two dynamic mass flow models and use them in simulations to evaluate systems issues, optimize designs, and make system design trades. One model is of nitrogen leakage in the space station, the other is of a waste processor failure in a regenerative life support system. Most systems analyses are concerned with optimizing the cost/benefit of a system at its nominal steady-state operating point. ALS analysis must go beyond the static steady state to include dynamic system design. All life support systems exhibit behavior that varies over time. ALS systems must respond to equipment operating cycles, repair schedules, and occasional off-nominal behavior or malfunctions. Biological components, such as bioreactors, composters, and food plant growth chambers, usually have operating cycles or other complex time behavior. Buffer sizes, material stocks, and resupply rates determine dynamic system behavior and directly affect system mass and cost. Dynamic simulation is needed to avoid the extremes of costly over-design of buffers and material reserves or system failure due to insufficient buffers and lack of stored material.

Importance of Nitrogen Availability on Land Carbon Sequestration in Northern Eurasia during the 21st Century

NASA Astrophysics Data System (ADS)

Kicklighter, D. W.; Melillo, J. M.; Monier, E.; Sokolov, A. P.; Lu, X.; Zhuang, Q.

2015-12-01

Atmospheric nitrogen deposition, nitrogen fixation, and the application of nitrogen fertilizers provide subsidies to land ecosystems that can increase nitrogen availability for vegetation production and thereby influence land carbon dynamics. In addition, enhanced decomposition of soil organic matter (SOM) from warming soils and permafrost degradation may also increase nitrogen availability in Northern Eurasia. Here, we examine how changes in nitrogen availability may influence land carbon dynamics in Northern Eurasia during the 21st century by comparing results for a "business as usual" scenario (the IPCC Representative Concentration Pathways or RCP 8.5) and a stabilization scenario (RCP 4.5) between a version of the Terrestrial Ecosystem Model that does not consider the effects of atmospheric nitrogen deposition, nitrogen fixation and soil thermal dynamics on land carbon dynamics (TEM 4.4) and a version that does consider these dynamics (TEM 6.0). In these simulations, atmospheric nitrogen deposition, nitrogen fixation, and fertilizer applications provide an additional 3.3 Pg N (RCP 4.5) to 3.9 Pg N (RCP 8.5) to Northern Eurasian ecosystems over the 21st century. Land ecosystems retain about 38% (RCP4.5) to 48% (RCP 8.5) of this nitrogen subsidy. Net nitrogen mineralization estimated by TEM 6.0 provide an additional 1.0 Pg N to vegetation than estimated by TEM 4.4 over the 21st century from enhanced decomposition of SOM including SOM formerly protected by permafrost. The enhanced nitrogen availability in TEM 6.0 allows Northern Eurasian ecosystems to sequester 1.8x (RCP 8.5) to 2.4x (RCP 4.5) more carbon over the 21st century than estimated by TEM 4.4. Our results indicate that consideration of nitrogen subsidies and soil thermal dynamics have a large influence on how simulated land carbon dynamics in Northern Eurasia will respond to future changes in climate, atmospheric chemistry, and disturbances.

[Nitrogen pool in northern taiga larch forests of Central Siberia].

PubMed

Shugaleĭ, L S; Vedrova, E F

2004-01-01

The pools of nitrogen in different blocks of forest ecosystems and its cycle in the soil are considered. It is shown that the bulk of nitrogen concentrates in the soil and dead organic matter (necromass) of an ecosystem. The nitrogen pool of forest litters and soils consists by 83-93% of the inert compounds that cannot be involved in the biological cycle. Mineralization of organic nitrogen-containing substances in the litters and soils usually yields ammonium as an end product. The amount of nitrogen mineralized over the growing season is partially expended for annual plant increment (30-65%) and immobilization (12-17%), with its large proportion being found in the soil.

The impact of post-fire salvage logging on microbial nitrogen cyclers in Mediterranean forest soil.

PubMed

Pereg, Lily; Mataix-Solera, Jorge; McMillan, Mary; García-Orenes, Fuensanta

2018-04-01

Forest fires are a regular occurrence in the Mediterranean basin. High severity fires and post-fire management can affect biological, chemical and physical properties of soil, including the composition and abundance of soil microbial communities. Salvage logging is a post-fire management strategy, which involves the removal of burnt wood from land after a fire. The main objective of this work was to evaluate the impact of post-fire salvage logging and microaggregation on soil microbial communities, specifically on the abundance of nitrogen cyclers and, thus, the potential of the soil for microbial nitrogen cycling. The abundance of nitrogen cyclers was assessed by quantification of microbial nitrogen cycling genes in soil DNA, including nifH (involved in nitrogen fixation), nirS/K and nosZ (involved in denitrification), amoA-B and amoA-Arch (involved in bacterial and archaeal nitrification, respectively). It was demonstrated that salvage logging reduced bacterial load post-fire when compared to tree retention control and resulted in significant changes to the abundance of functional bacteria involved in nitrogen cycling. Microbial gene pools involved in various stages of the nitrogen cycle were larger in control soil than in soil subjected to post-fire salvage logging and were significantly correlated with organic matter, available phosphorous, nitrogen and aggregate stability. The microaggregate fraction of the soil, which has been associated with greater organic carbon, was shown to be a hotspot for nitrogen cyclers particularly under salvage logging. The impact of post-fire management strategies on soil microbial communities needs to be considered in relation to maintaining ecosystem productivity, resilience and potential impact on climate change. Copyright © 2017 Elsevier B.V. All rights reserved.

Nutrient stoichiometry of temperate trees and effects on the coupled cycles of carbon, nitrogen, and cations in soil

NASA Astrophysics Data System (ADS)

Mueller, K. E.; Oleksyn, J.; Hobbie, S. E.; Reich, P.; Chorover, J. D.; Freeman, K. H.; Eissenstat, D.

2009-12-01

Nutrient stoichiometry of leaf litter (LL) is a potentially important driver of plant effects on soil biogeochemistry; it is also responsive to environmental perturbations and differs among plant functional groups that may have predictable responses to the environment. Thus variation in LL nutrient stoichiometry may provide a predictive framework for the influence of global change on soil. However, this approach depends on several key, but poorly tested assumptions, including: 1) other plant organs follow similar patterns and have similar effects on soil biogeochemistry, and 2) patterns in leaf traits, functional group dominance, and soil properties across large-spatial scales are predictive at smaller scales. To address these assumptions and test the utility of nutrient stoichiometry as a predictive framework for soil change, we synthesize data on tree stoichiometry and soil biogeochemistry from a long-term (> 30 yr) common garden experiment containing replicated, monoculture plots of 14 temperate tree species. LL nutrient stoichiometry alone is insufficient to explain differences in biogeochemical cycling among tree species, in part due to the dissimilarity of leaf and root traits within species. Notably, different elements and plant organs have independent impacts on soil biogeochemistry. LL nitrogen (N) concentration and lignin:N ratios have small or negligible effects on soil carbon (C), N, and cation cycling, while LL-calcium (Ca) drives differences in litter decomposition and soil pH among species in a manner consistent with nutrient requirements of anecic earthworms. However, LL-Ca effects on C and N cycles in soil appear minor compared to the influences of root N and, unexpectedly, green leaf N, which combine to drive differences in soil N dynamics via unique mechanisms consistent with nutrient requirements of soil microbes and the trees. In turn, soil N dynamics are strongly correlated with soil acidity and C stabilization. By taking into account the stoichiometry of each plant organ, of soil microbes and fauna, and the interactions among C, N, and cation cycles, the predictive capacity of tree nutrient stoichiometry for understanding soil change is apparent, albeit complex.

Development of soil properties and nitrogen cycling in created wetlands

USGS Publications Warehouse

Wolf, K.L.; Ahn, C.; Noe, G.B.

2011-01-01

Mitigation wetlands are expected to compensate for the loss of structure and function of natural wetlands within 5–10 years of creation; however, the age-based trajectory of development in wetlands is unclear. This study investigates the development of coupled structural (soil properties) and functional (nitrogen cycling) attributes of created non-tidal freshwater wetlands of varying ages and natural reference wetlands to determine if created wetlands attain the water quality ecosystem service of nitrogen (N) cycling over time. Soil condition component and its constituents, gravimetric soil moisture, total organic carbon, and total N, generally increased and bulk density decreased with age of the created wetland. Nitrogen flux rates demonstrated age-related patterns, with younger created wetlands having lower rates of ammonification, nitrification, nitrogen mineralization, and denitrification potential than older created wetlands and natural reference wetlands. Results show a clear age-related trajectory in coupled soil condition and N cycle development, which is essential for water quality improvement. These findings can be used to enhance N processing in created wetlands and inform the regulatory evaluation of mitigation wetlands by identifying structural indicators of N processing performance.

Nitrogen cycle in microbial mats: completely unknown?

NASA Astrophysics Data System (ADS)

Coban, O.; Bebout, B.

2015-12-01

Microbial mats are thought to have originated around 3.7 billion years ago, most likely in the areas around submarine hydrothermal vents, which supplied a source of energy in the form of reduced chemical species from the Earth's interior. Active hydrothermal vents are also believed to exist on Jupiter's moon Europa, Saturn's moon Enceladus, and on Mars, earlier in that planet's history. Microbial mats have been an important force in the maintenance of Earth's ecosystems and the first photosynthesis was also originated there. Microbial mats are believed to exhibit most, if not all, biogeochemical processes that exist in aquatic ecosystems, due to the presence of different physiological groups of microorganisms therein. While most microbially mediated biogeochemical transformations have been shown to occur within microbial mats, the nitrogen cycle in the microbial mats has received very little study in spite of the fact that nitrogen usually limits growth in marine environments. We will present the first results in the determination of a complete nitrogen budget for a photosynthetic microbial mat. Both in situ sources and sinks of nitrogen in photosynthetic microbial mats are being measured using stable isotope techniques. Our work has a particular focus on recently described, but poorly understood, processes, e.g., anammox and dissimilatory nitrate reduction, and an emphasis on understanding the role that nitrogen cycling may play in generating biogenic nitrogen isotopic signatures and biomarker molecules. Measurements of environmental controls on nitrogen cycling should offer insight into the nature of co-evolution of these microbial communities and their planets of origin. Identifying the spatial (microscale) as well as temporal (diel and seasonal) distribution of nitrogen transformations, e.g., rates of nitrification and denitrification, within mats, particularly with respect to the distribution of photosynthetically-produced oxygen, is anticipated. The results of this research, the first results of which will be presented here, will help us to improve our understanding of the cycle of the element most responsible for limiting the production of biomass on Earth and improved an ability to use stable isotopes of nitrogen, and nitrogen containing compounds, in our search for life elsewhere.

Biome-scale nitrogen fixation strategies selected by climatic constraints on nitrogen cycle.

PubMed

Sheffer, Efrat; Batterman, Sarah A; Levin, Simon A; Hedin, Lars O

2015-11-23

Dinitrogen fixation by plants (in symbiosis with root bacteria) is a major source of new nitrogen for land ecosystems(1). A long-standing puzzle(2) is that trees capable of nitrogen fixation are abundant in nitrogen-rich tropical forests, but absent or restricted to early successional stages in nitrogen-poor extra-tropical forests. This biome-scale pattern presents an evolutionary paradox(3), given that the physiological cost(4) of nitrogen fixation predicts the opposite pattern: fixers should be out-competed by non-fixers in nitrogen-rich conditions, but competitively superior in nitrogen-poor soils. Here we evaluate whether this paradox can be explained by the existence of different fixation strategies in tropical versus extra-tropical trees: facultative fixers (capable of downregulating fixation(5,6) by sanctioning mutualistic bacteria(7)) are common in the tropics, whereas obligate fixers (less able to downregulate fixation) dominate at higher latitudes. Using a game-theoretic approach, we assess the ecological and evolutionary conditions under which these fixation strategies emerge, and examine their dependence on climate-driven differences in the nitrogen cycle. We show that in the tropics, transient soil nitrogen deficits following disturbance and rapid tree growth favour a facultative strategy and the coexistence of fixers and non-fixers. In contrast, sustained nitrogen deficits following disturbance in extra-tropical forests favour an obligate fixation strategy, and cause fixers to be excluded in late successional stages. We conclude that biome-scale differences in the abundance of nitrogen fixers can be explained by the interaction between individual plant strategies and climatic constraints on the nitrogen cycle over evolutionary time.

Nitrogen Cycling in the Mycorrhizosphere: Multipartite Interactions and Plant Nitrogen Uptake Vary with Fertilization Legacy

NASA Astrophysics Data System (ADS)

Hestrin, R.; Lehmann, J.

2017-12-01

Soil microbes play an important role in rhizosphere nutrient cycling and plant productivity. In this study, the contributions of soil microbes to organic matter mineralization and plant nitrogen uptake were investigated using incubation and microcosm experiments. Microbial inocula included arbuscular mycorrhizal fungi and microbial communities sampled across a long-term gradient of nitrogen fertilization. Stable isotopes, nanoSIMS imaging, and phospholipid fatty acid analysis were used to track carbon and nitrogen movement from organic matter into microbes, mycorrhizal fungi, and plants. Results show that multipartite relationships between plants and microbes increased plant growth and access to nitrogen from organic matter, and that nitrogen fertilization history had a lasting effect on microbial contributions to fungal and plant nitrogen uptake. This research links rhizosphere ecology and land management with terrestrial biogeochemistry.

Nitrogen Deposition: A Component of Global Change Analyses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Norby, Richard J.

1997-12-31

The global cycles of carbon and nitrogen are being perturbed by human activities that increase the transfer from large pools of nonreactive forms of the elements to reactive forms that are essential to the functioning of the terrestrial biosphere. The cycles are closely linked at all scales, and global change analyses must consider carbon and nitrogen cycles together. The increasing amount of nitrogen originating from fossil fuel combustion and deposited to terrestrial ecosystems as nitrogen oxides could increase the capacity of ecosystems to sequester carbon thereby removing some of the excess carbon dioxide from the atmosphere and slowing the developmentmore » of greenhouse warming. Several global and ecosystem models have calculated the amount of carbon sequestration that can be attributed to nitrogen deposition based on assumptions about the allocation of nitrogen among ecosystem components with different carbon-nitrogen ratios. They support the premise that nitrogen deposition is responsible for a an increasing terrestrial carbon sink since industrialization began, but there are large uncertainties related to the continued capacity of ecosystems to retain exogenous nitrogen. Whether terrestrial ecosystems continue to sequester additional carbon will depend in part on their response to increasing atmospheric carbon dioxide concentrations, which is widely thought to be constrained by limited nitrogen availability. Ecosystem models generally support the conclusion that the responses of ecosystems to increasing concentrations of carbon dioxide will be larger, and the range of possible responses will be wider, in ecosystems with increased nitrogen inputs originating as atmospheric deposition.« less

Microbial Succession and Nitrogen Cycling in Cultured Biofilms as Affected by the Inorganic Nitrogen Availability.

PubMed

Li, Shuangshuang; Peng, Chengrong; Wang, Chun; Zheng, Jiaoli; Hu, Yao; Li, Dunhai

2017-01-01

Biofilms play important roles in nutrients and energy cycling in aquatic ecosystems. We hypothesized that as eutrophication could change phytoplankton community and decrease phytoplankton diversity, ambient inorganic nitrogen level will affect the microbial community and diversity of biofilms and the roles of biofilms in nutrient cycling. Biofilms were cultured using a flow incubator either with replete inorganic nitrogen (N-rep) or without exogenous inorganic nitrogen supply (N-def). The results showed that the biomass and nitrogen and phosphorous accumulation of biofilms were limited by N deficiency; however, as expected, the N-def biofilms had significantly higher microbial diversity than that of N-rep biofilms. The microbial community of biofilms shifted in composition and abundance in response to ambient inorganic nitrogen level. For example, as compared between the N-def and the N-rep biofilms, the former consisted of more diazotrophs, while the latter consisted of more denitrifying bacteria. As a result of the shift of the functional microbial community, the N concentration of N-rep medium kept decreasing, while that of N-def medium showed an increasing trend in the late stage. This indicates that biofilms can serve as the source or the sink of nitrogen in aquatic ecosystems, and it depends on the inorganic nitrogen availability.

A sediment resuspension and water quality model of Lake Okeechobee

USGS Publications Warehouse

James, R.T.; Martin, J.; Wool, T.; Wang, P.-F.

1997-01-01

The influence of sediment resuspension on the water quality of shallow lakes is well documented. However, a search of the literature reveals no deterministic mass-balance eutrophication models that explicitly include resuspension. We modified the Lake Okeeehobee water quality model - which uses the Water Analysis Simulation Package (WASP) to simulate algal dynamics and phosphorus, nitrogen, and oxygen cycles - to include inorganic suspended solids and algorithms that: (1) define changes in depth with changes in volume; (2) compute sediment resuspension based on bottom shear stress; (3) compute partition coefficients for ammonia and ortho-phosphorus to solids; and (4) relate light attenuation to solids concentrations. The model calibration and validation were successful with the exception of dissolved inorganic nitrogen species which did not correspond well to observed data in the validation phase. This could be attributed to an inaccurate formulation of algal nitrogen preference and/or the absence of nitrogen fixation in the model. The model correctly predicted that the lake is lightlimited from resuspended solids, and algae are primarily nitrogen limited. The model simulation suggested that biological fluxes greatly exceed external loads of dissolved nutrients; and sedimentwater interactions of organic nitrogen and phosphorus far exceed external loads. A sensitivity analysis demonstrated that parameters affecting resuspension, settling, sediment nutrient and solids concentrations, mineralization, algal productivity, and algal stoichiometry are factors requiring further study to improve our understanding of the Lake Okeechobee ecosystem.

Dynamics of Bacterial and Fungal Communities during the Outbreak and Decline of an Algal Bloom in a Drinking Water Reservoir.

PubMed

Zhang, Haihan; Jia, Jingyu; Chen, Shengnan; Huang, Tinglin; Wang, Yue; Zhao, Zhenfang; Feng, Ji; Hao, Huiyan; Li, Sulin; Ma, Xinxin

2018-02-18

The microbial communities associated with algal blooms play a pivotal role in organic carbon, nitrogen and phosphorus cycling in freshwater ecosystems. However, there have been few studies focused on unveiling the dynamics of bacterial and fungal communities during the outbreak and decline of algal blooms in drinking water reservoirs. To address this issue, the compositions of bacterial and fungal communities were assessed in the Zhoucun drinking water reservoir using 16S rRNA and internal transcribed spacer (ITS) gene Illumina MiSeq sequencing techniques. The results showed the algal bloom was dominated by Synechococcus, Microcystis, and Prochlorothrix. The bloom was characterized by a steady decrease of total phosphorus (TP) from the outbreak to the decline period (p < 0.05) while Fe concentration increased sharply during the decline period (p < 0.05). The highest algal biomass and cell concentrations observed during the bloom were 51.7 mg/L and 1.9×108 cell/L, respectively. The cell concentration was positively correlated with CODMn (r = 0.89, p = 0.02). Illumina Miseq sequencing showed that algal bloom altered the water bacterial and fungal community structure. During the bloom, the dominant bacterial genus were Acinetobacter sp., Limnobacter sp., Synechococcus sp., and Roseomonas sp. The relative size of the fungal community also changed with algal bloom and its composition mainly contained Ascomycota, Basidiomycota and Chytridiomycota. Heat map profiling indicated that algal bloom had a more consistent effect upon fungal communities at genus level. Redundancy analysis (RDA) also demonstrated that the structure of water bacterial communities was significantly correlated to conductivity and ammonia nitrogen. Meanwhile, water temperature, Fe and ammonia nitrogen drive the dynamics of water fungal communities. The results from this work suggested that water bacterial and fungal communities changed significantly during the outbreak and decline of algal bloom in Zhoucun drinking water reservoir. Our study highlights the potential role of microbial diversity as a driving force for the algal bloom and biogeochemical cycling of reservoir ecology.

Dynamics of Bacterial and Fungal Communities during the Outbreak and Decline of an Algal Bloom in a Drinking Water Reservoir

PubMed Central

Zhang, Haihan; Jia, Jingyu; Chen, Shengnan; Huang, Tinglin; Wang, Yue; Zhao, Zhenfang; Feng, Ji; Hao, Huiyan; Li, Sulin; Ma, Xinxin

2018-01-01

The microbial communities associated with algal blooms play a pivotal role in organic carbon, nitrogen and phosphorus cycling in freshwater ecosystems. However, there have been few studies focused on unveiling the dynamics of bacterial and fungal communities during the outbreak and decline of algal blooms in drinking water reservoirs. To address this issue, the compositions of bacterial and fungal communities were assessed in the Zhoucun drinking water reservoir using 16S rRNA and internal transcribed spacer (ITS) gene Illumina MiSeq sequencing techniques. The results showed the algal bloom was dominated by Synechococcus, Microcystis, and Prochlorothrix. The bloom was characterized by a steady decrease of total phosphorus (TP) from the outbreak to the decline period (p < 0.05) while Fe concentration increased sharply during the decline period (p < 0.05). The highest algal biomass and cell concentrations observed during the bloom were 51.7 mg/L and 1.9×108 cell/L, respectively. The cell concentration was positively correlated with CODMn (r = 0.89, p = 0.02). Illumina Miseq sequencing showed that algal bloom altered the water bacterial and fungal community structure. During the bloom, the dominant bacterial genus were Acinetobacter sp., Limnobacter sp., Synechococcus sp., and Roseomonas sp. The relative size of the fungal community also changed with algal bloom and its composition mainly contained Ascomycota, Basidiomycota and Chytridiomycota. Heat map profiling indicated that algal bloom had a more consistent effect upon fungal communities at genus level. Redundancy analysis (RDA) also demonstrated that the structure of water bacterial communities was significantly correlated to conductivity and ammonia nitrogen. Meanwhile, water temperature, Fe and ammonia nitrogen drive the dynamics of water fungal communities. The results from this work suggested that water bacterial and fungal communities changed significantly during the outbreak and decline of algal bloom in Zhoucun drinking water reservoir. Our study highlights the potential role of microbial diversity as a driving force for the algal bloom and biogeochemical cycling of reservoir ecology. PMID:29463021

An individual-based population dynamic model for estimating biomass yield and nutrient fluxes through an off-shore mussel ( Mytilus galloprovincialis) farm

NASA Astrophysics Data System (ADS)

Brigolin, Daniele; Maschio, Gabriele Dal; Rampazzo, Federico; Giani, Michele; Pastres, Roberto

2009-04-01

The fluxes of carbon, nitrogen and phosphorus through an off-shore long-line Mytilus galloprovincialis farm during a typical rearing cycle were estimated by combining a simple population dynamic model, based on a new individual model, and a set of field data, concerning the composition of the seston, as well as that of mussel meat and faeces. The individual model, based on an energy budget, was validated against a set of original field data, which were purposely collected from July 2006 to May 2007 in the North-Western Adriatic Sea (Italy) and was further tested using historical data. The model was upscaled to the population level by means of a set of Monte Carlo simulations, which were used for estimating the size structure of the population. The daily fluxes of C, N and P associated with mussel filtration, excretion and faeces and pseudo-faeces production were integrated over the 10-month-long rearing cycle and compared with the total amount of C, N and P removed by harvesting. The results indicate that the individual model compares well with an existing literature model and provides reliable estimations of the growth of mussel specimen over a range of trophic conditions which are typical of the Northern Adriatic Sea coastal area. The results of the budget calculation indicate that, even though the harvest represents a net removal of phosphorus and nitrogen from the ecosystem, the mussel farm increases the retention time of both nutrients in the coastal area, via the deposition of faeces and pseudo-faeces on the sea-bed. In fact, the amount of nitrogen associated with deposition is approximately twice the harvested one and the amount of phosphorus is approximately five times higher. These findings are in qualitative agreement with the results of literature budget and model calculations carried out in a temperate coastal embayment. This agreement suggests that the proper assessment of the overall effect of long-line mussel farming on both the benthic and pelagic ecosystem asks for an integrated modelling approach, which should include the dynamic of early diagenesis processes, as well as of that of nutrients released from the surface sediment.

Impacts of atmospheric variability on a coupled upper-ocean/ecosystem model of the subarctic Northeast Pacific

NASA Astrophysics Data System (ADS)

Monahan, Adam Hugh; Denman, Kenneth L.

2004-06-01

The biologically-mediated flux of carbon from the upper ocean to below the permanent thermocline (the biological pump) is estimated to be ˜10 PgC/yr [, 2001], and plays an important role in the global carbon cycle. A detailed quantitative understanding of the dynamics of the biological pump is therefore important, particularly in terms of its potential sensitivity to climate change and its role in this change via feedback processes. Previous studies of coupled upper-ocean/planktonic ecosystem dynamics have considered models forced by observed atmospheric variability or by smooth annual and diurnal cycles. The second approach has the drawback that environmental variability is ubiquitous in the climate system, and may have a nontrivial impact on the (nonlinear) dynamics of the system, while the first approach is limited by the fact that observed time series are generally too short to obtain statistically robust characterizations of variability in the system. In the present study, an empirical stochastic model of high-frequency atmospheric variability (with a decorrelation timescale of less than a week) is estimated from long-term observations at Ocean Station Papa in the northeast subarctic Pacific. This empirical model, the second-order statistics of which resemble those of the observations to a good approximation, is used to produce very long (1000-year) realizations of atmospheric variability which are used to drive a coupled upper-ocean/ecosystem model. It is found that fluctuations in atmospheric forcing do not have an essential qualitative impact on most aspects of the dynamics of the ecosystem when primary production is limited by the availability of iron, although pronounced interannual variability in diatom abundance is simulated (even in the absence of episodic iron fertilization). In contrast, the impacts of atmospheric variability are considerably more significant when phytoplankton growth is limited in the summer by nitrogen availability, as observed closer to the North American coast. Furthermore, the high-frequency variability in atmospheric forcing is associated with regions in parameter space in which the system alternates between iron and nitrogen limitation on interannual to interdecadal timescales. Both the mean and variability of export production are found to be significantly larger in the nitrogen-limited regime than in the iron-limited regime.

The nitrogen cycle in anaerobic methanotrophic mats of the Black Sea is linked to sulfate reduction and biomass decomposition.

PubMed

Siegert, Michael; Taubert, Martin; Seifert, Jana; von Bergen-Tomm, Martin; Basen, Mirko; Bastida, Felipe; Gehre, Matthias; Richnow, Hans-Hermann; Krüger, Martin

2013-11-01

Anaerobic methanotrophic (ANME) mats host methane-oxidizing archaea and sulfate-reducing prokaryotes. Little is known about the nitrogen cycle in these communities. Here, we link the anaerobic oxidation of methane (AOM) to the nitrogen cycle in microbial mats of the Black Sea by using stable isotope probing. We used four different (15)N-labeled sources of nitrogen: dinitrogen, nitrate, nitrite and ammonium. We estimated the nitrogen incorporation rates into the total biomass and the methyl coenzyme M reductase (MCR). Dinitrogen played an insignificant role as nitrogen source. Assimilatory and dissimilatory nitrate reduction occurred. High rates of nitrate reduction to dinitrogen were stimulated by methane and sulfate, suggesting that oxidation of reduced sulfur compounds such as sulfides was necessary for AOM with nitrate as electron acceptor. Nitrate reduction to dinitrogen occurred also in the absence of methane as electron donor but at six times slower rates. Dissimilatory nitrate reduction to ammonium was independent of AOM. Ammonium was used for biomass synthesis under all conditions. The pivotal enzyme in AOM coupled to sulfate reduction, MCR, was synthesized from nitrate and ammonium. Results show that AOM coupled to sulfate reduction along with biomass decomposition drive the nitrogen cycle in the ANME mats of the Black Sea and that MCR enzymes are involved in this process. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Nitrogen Cycle Modeling: a Mechanistic Estimate of N-losses From Agricultural Fields Over the Seasonal Time Period

NASA Astrophysics Data System (ADS)

Maggi, F.; Gu, C.; Venterea, R.; Riley, W.; Oldenburg, C.

2007-12-01

The biogeochemical cycle of nitrogen and production of NO, N2O, and CO2 gas and NO2- and NO3- ions in nutrient-enriched agricultural fields is mediated by soil microbial activity, the hydrological cycle, plant dynamics, and climatic forcing. Understanding how NO, N2O, CO2 gases and NO2- and NO3- ions are released from agricultural fields to the environment is a key factor in controlling the green-house effect and water contamination, and assumes ever greater importance in view of the foreseen increase in biofuel, food, and fiber production. To address these issues we have developed a mechanistic model (TOUGHREACT-N) for various nitrification and denitrification pathways, multiple microbial biomass dynamics, heat and water flows, and various chemical reactions at local and kinetic equilibrium. The soil column is represented in a 1D framework, with hydraulic properties described by a water tension-saturation model. Biotic and abiotic reactions are assumed to follow Michaelis-Menten kinetics, while a consortium of several micro-organismal strains is assumed to follow multiple Monod growth kinetics accounting for electron donor, electron acceptor, and inhibitor concentrations. Water flow is modeled with the Darcy-Richards equation, while nutrient transport is modeled by Fickian advective and diffusive processes in both gaseous and liquid phases. Heat flow is modeled with the Fourier equation. Plant dynamics is taken into account by coupling TOUGHREACT-N with CERES to determine water and nutrient uptake, and soil carbon accumulation. TOUGHREACT-N was calibrated against field measurements to assess pathways of N losses following fertilization. A good agreement between field observations and model predictions was found. We identified two dominant time scales in the system response that depended on plants dynamics. Before plants have substantial impact on soil nutrients and moisture content, N losses are characterized by rapid increases as a function of water application rate and fertilizer amount and application depth. Under reference fertilization and irrigation practices, approximately 1.64% and 1.61% of the total applied N is lost as N-NO(g) and N-N2O(g), respectively, while losses of N-N2(g), N-NO2-, and N-NO3- where several orders of magnitude smaller. When plants grow, pulses in N losses became smoother due to nutrient and water uptake. Contrarily to predictions of non- mechanistic, coarse-scale models (e.g., CASA, CENTURY) N losses are predominantly non-linearly increasing with fertilizer and water application amount, and with fertilizer application depth, thus invoking a revision of long- term estimates of nitrogen and carbon balances at global scales

Nitrogen Bsalance for a Plantation Forest Drainage Canal on the North Carolina Coastal Plain

USDA-ARS?s Scientific Manuscript database

Human alteration of the nitrogen cycle has led to increased riverine nitrogen loads, contributing to the eutrophication of lakes, streams, estuaries, and near-coastal oceans. These riverine nitrogen loads are usually less than the total nitrogen inputs to the system, indicating nitrogen removal duri...

Effect of settled diatom‐aggregates on benthic nitrogen cycling

PubMed Central

Thamdrup, Bo; Stief, Peter; Glud, Ronnie N.

2017-01-01

Abstract The marine sediment hosts a mosaic of microhabitats. Recently it has been demonstrated that the settlement of phycodetrital aggregates can induce local changes in the benthic O2 distribution due to confined enrichment of organic material and alteration of the diffusional transport. Here, we show how this microscale O2 shift substantially affects benthic nitrogen cycling. In sediment incubations, the settlement of diatom‐aggregates markedly enhanced benthic O2 and NO3− consumption and stimulated NO2− and NH4+ production. Oxygen microprofiles revealed the rapid development of anoxic niches within and underneath the aggregates. During 120 h following the settling of the aggregates, denitrification of NO3− from the overlying water increased from 13.5 μmol m−2 h−1 to 24.3 μmol m−2 h−1, as quantified by 15N enrichment experiment. Simultaneously, N2 production from coupled nitrification‐denitrification decreased from 33.4 μmol m−2 h−1 to 25.9 μmol m−2 h−1, probably due to temporary inhibition of the benthic nitrifying community. The two effects were of similar magnitude and left the total N2 production almost unaltered. At the aggregate surface, nitrification was, conversely, very efficient in oxidizing NH4+ liberated by mineralization of the aggregates. The produced NO3− was preferentially released into the overlying water and only a minor fraction contributed to denitrification activity. Overall, our data indicate that the abrupt change in O2 microdistribution caused by aggregates stimulates denitrification of NO3− from the overlying water, and loosens the coupling between benthic nitrification and denitrification both in time and space. The study contributes to expanding the conceptual and quantitative understanding of how nitrogen cycling is regulated in dynamic benthic environments. PMID:29456269

Optimal Plant Carbon Allocation Implies a Biological Control on Nitrogen Availability

NASA Astrophysics Data System (ADS)

Prentice, I. C.; Stocker, B. D.

2015-12-01

The degree to which nitrogen availability limits the terrestrial C sink under rising CO2 is a key uncertainty in carbon cycle and climate change projections. Results from ecosystem manipulation studies and meta-analyses suggest that plant C allocation to roots adjusts dynamically under varying degrees of nitrogen availability and other soil fertility parameters. In addition, the ratio of biomass production to GPP appears to decline under nutrient scarcity. This reflects increasing plant C exudation into the soil (Cex) with decreasing nutrient availability. Cex is consumed by an array of soil organisms and may imply an improvement of nutrient availability to the plant. Thus, N availability is under biological control, but incurs a C cost. In spite of clear observational support, this concept is left unaccounted for in Earth system models. We develop a model for the coupled cycles of C and N in terrestrial ecosystems to explore optimal plant C allocation under rising CO2 and its implications for the ecosystem C balance. The model follows a balanced growth approach, accounting for the trade-offs between leaf versus root growth and Cex in balancing C fixation and N uptake. We assume that Cex is proportional to root mass, and that the ratio of N uptake (Nup) to Cex is proportional to inorganic N concentration in the soil solution. We further assume that Cex is consumed by N2-fixing processes if the ratio of Nup:Cex falls below the inverse of the C cost of N2-fixation. Our analysis thereby accounts for the feedbacks between ecosystem C and N cycling and stoichiometry. We address the question of how the plant C economy will adjust under rising atmospheric CO2 and what this implies for the ecosystem C balance and the degree of N limitation.

Quantitative Relationships between Photosynthetic, Nitrogen Fixing, and Fermentative H2 Metabolism in a Photosynthetic Microbial Mat

NASA Technical Reports Server (NTRS)

Hoehler, Tori M.; Albert, Daniel B.; Bebout, Brad M.; Turk, Kendra A.; DesMarais, David J.

2004-01-01

The ultimate potential of any microbial ecosystem to contribute chemically to its environment - and therefore, to impact planetary biogeochemistry or to generate recognizable biosignatures - depends not only on the individual metabolic capabilities of constituent organisms, but also on how those capabilities are expressed through interactions with neighboring organisms. This is particularly important for microbial mats, which compress an extremely broad range of metabolic potential into a small and dynamic system. H2 participates in many of these metabolic processes, including the major elemental cycling processes of photosynthesis, nitrogen fixation, sulfate reduction, and fermentation, and may therefore serve as a mediator of microbial interactions within the mat system. Collectively, the requirements of energy, electron transfer, and biomass element stoichiometry suggest quantitative relationships among the major element cycling processes, as regards H2 metabolism We determined experimentally the major contributions to 32 cycling in hypersaline microbial mats from Baja California, Mexico, and compared them to predicted relationships. Fermentation under dark, anoxic conditions is quantitatively the most important mechanism of H2 production, consistent with expectations for non-heterocystous mats such as those under study. Up to 16% of reducing equivalents fixed by photosynthesis during the day may be released by this mechanism. The direct contribution of nitrogen fixation to H2 production is small in comparison, but this process may indirectly stimulate substantial H2 generation, by requiring higher rates of fermentation. Sulfate reduction, aerobic consumption, diffusive and ebulitive loss, and possibly H2-based photoreduction of CO2 serve as the principal H2 sinks. Collectively, these processes interact to create an orders-of-magnitude daily variation in H2 concentrations and fluxes, and thereby in the oxidation-reduction potential that is imposed on microbial processes occuring within the mat matrix.

Nitrogen metabolism in haloarchaea

PubMed Central

Bonete, María José; Martínez-Espinosa, Rosa María; Pire, Carmen; Zafrilla, Basilio; Richardson, David J

2008-01-01

The nitrogen cycle (N-cycle), principally supported by prokaryotes, involves different redox reactions mainly focused on assimilatory purposes or respiratory processes for energy conservation. As the N-cycle has important environmental implications, this biogeochemical cycle has become a major research topic during the last few years. However, although N-cycle metabolic pathways have been studied extensively in Bacteria or Eukarya, relatively little is known in the Archaea. Halophilic Archaea are the predominant microorganisms in hot and hypersaline environments such as salted lakes, hot springs or salted ponds. Consequently, the denitrifying haloarchaea that sustain the nitrogen cycle under these conditions have emerged as an important target for research aimed at understanding microbial life in these extreme environments. The haloarchaeon Haloferax mediterranei was isolated 20 years ago from Santa Pola salted ponds (Alicante, Spain). It was described as a denitrifier and it is also able to grow using NO3-, NO2- or NH4+ as inorganic nitrogen sources. This review summarizes the advances that have been made in understanding the N-cycle in halophilic archaea using Hfx mediterranei as a haloarchaeal model. The results obtained show that this microorganism could be very attractive for bioremediation applications in those areas where high salt, nitrate and nitrite concentrations are found in ground waters and soils. PMID:18593475

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

PubMed Central

Zhao, Mengxin; Xue, Kai; Wang, Feng; Liu, Shanshan; Bai, Shijie; Sun, Bo; Zhou, Jizhong; Yang, Yunfeng

2014-01-01

Despite microbes' key roles in driving biogeochemical cycles, the mechanism of microbe-mediated feedbacks to global changes remains elusive. Recently, soil transplant has been successfully established as a proxy to simulate climate changes, as the current trend of global warming coherently causes range shifts toward higher latitudes. Four years after southward soil transplant over large transects in China, we found that microbial functional diversity was increased, in addition to concurrent changes in microbial biomass, soil nutrient content and functional processes involved in the nitrogen cycle. However, soil transplant effects could be overridden by maize cropping, which was attributed to a negative interaction. Strikingly, abundances of nitrogen and carbon cycle genes were increased by these field experiments simulating global change, coinciding with higher soil nitrification potential and carbon dioxide (CO2) efflux. Further investigation revealed strong correlations between carbon cycle genes and CO2 efflux in bare soil but not cropped soil, and between nitrogen cycle genes and nitrification. These findings suggest that changes of soil carbon and nitrogen cycles by soil transplant and cropping were predictable by measuring microbial functional potentials, contributing to a better mechanistic understanding of these soil functional processes and suggesting a potential to incorporate microbial communities in greenhouse gas emission modeling. PMID:24694714

Titan's past and future: 3D modeling of a pure nitrogen atmosphere and geological implications

NASA Astrophysics Data System (ADS)

Charnay, Benjamin; Forget, François; Tobie, Gabriel; Sotin, Christophe; Wordsworth, Robin

2014-10-01

Several clues indicate that Titan's atmosphere has been depleted in methane during some period of its history, possibly as recently as 0.5-1 billion years ago. It could also happen in the future. Under these conditions, the atmosphere becomes only composed of nitrogen with a range of temperature and pressure allowing liquid or solid nitrogen to condense. Here, we explore these exotic climates throughout Titan's history with a 3D Global Climate Model (GCM) including the nitrogen cycle and the radiative effect of nitrogen clouds. We show that for the last billion years, only small polar nitrogen lakes should have formed. Yet, before 1 Ga, a significant part of the atmosphere could have condensed, forming deep nitrogen polar seas, which could have flowed and flooded the equatorial regions. Alternatively, nitrogen could be frozen on the surface like on Triton, but this would require an initial surface albedo higher than 0.65 at 4 Ga. Such a state could be stable even today if nitrogen ice albedo is higher than this value. According to our model, nitrogen flows and rain may have been efficient to erode the surface. Thus, we can speculate that a paleo-nitrogen cycle may explain the erosion and the age of Titan's surface, and may have produced some of the present valley networks and shorelines. Moreover, by diffusion of liquid nitrogen in the crust, a paleo-nitrogen cycle could be responsible of the flattening of the polar regions and be at the origin of the methane outgassing on Titan.

Life cycle analysis on fossil energy ratio of algal biodiesel: effects of nitrogen deficiency and oil extraction technology.

PubMed

Jian, Hou; Jing, Yang; Peidong, Zhang

2015-01-01

Life cycle assessment (LCA) has been widely used to analyze various pathways of biofuel preparation from "cradle to grave." Effects of nitrogen supply for algae cultivation and technology of algal oil extraction on life cycle fossil energy ratio of biodiesel are assessed in this study. Life cycle fossil energy ratio of Chlorella vulgaris based biodiesel is improved by growing algae under nitrogen-limited conditions, while the life cycle fossil energy ratio of biodiesel production from Phaeodactylum tricornutum grown with nitrogen deprivation decreases. Compared to extraction of oil from dried algae, extraction of lipid from wet algae with subcritical cosolvents achieves a 43.83% improvement in fossil energy ratio of algal biodiesel when oilcake drying is not considered. The outcome for sensitivity analysis indicates that the algal oil conversion rate and energy content of algae are found to have the greatest effects on the LCA results of algal biodiesel production, followed by utilization ratio of algal residue, energy demand for algae drying, capacity of water mixing, and productivity of algae.

Life Cycle Analysis on Fossil Energy Ratio of Algal Biodiesel: Effects of Nitrogen Deficiency and Oil Extraction Technology

PubMed Central

Jian, Hou; Jing, Yang; Peidong, Zhang

2015-01-01

Life cycle assessment (LCA) has been widely used to analyze various pathways of biofuel preparation from “cradle to grave.” Effects of nitrogen supply for algae cultivation and technology of algal oil extraction on life cycle fossil energy ratio of biodiesel are assessed in this study. Life cycle fossil energy ratio of Chlorella vulgaris based biodiesel is improved by growing algae under nitrogen-limited conditions, while the life cycle fossil energy ratio of biodiesel production from Phaeodactylum tricornutum grown with nitrogen deprivation decreases. Compared to extraction of oil from dried algae, extraction of lipid from wet algae with subcritical cosolvents achieves a 43.83% improvement in fossil energy ratio of algal biodiesel when oilcake drying is not considered. The outcome for sensitivity analysis indicates that the algal oil conversion rate and energy content of algae are found to have the greatest effects on the LCA results of algal biodiesel production, followed by utilization ratio of algal residue, energy demand for algae drying, capacity of water mixing, and productivity of algae. PMID:26000338

Novel Tool for Simultaneous Carbon and Nitrogen Stable Isotope Analyses in Aqueous Samples

NASA Astrophysics Data System (ADS)

Federherr, E.; Schmidt, T. C.; Cerli, C.; Kalbitz, K.; Kupka, H. J.; Lange, L.; Dunsbach, R.; Panetta, R. J.; Kasson, A.

2014-12-01

Investigation of transformation and transport processes of carbon and nitrogen in ecosystems plays an important role to understand and predict their dynamics and role in biogeochemistry. Consequently, suitable and accurate methods for concentration as well as stable isotopic composition analysis of carbon and nitrogen in waters and aqueous solutions play a significant role. Traditionally dissolved carbon and nitrogen stable isotope analysis (SIA) is performed using either offline sample preparation followed by elemental analysis isotope ratio mass spectrometry (EA/IRMS) or modified wet chemical oxidation based device coupled to IRMS. Recently we presented a high temperature combustion system (HTC), which significantly improves upon these methods for dissolved organic carbon (DOC) SIA. The analysis of δ15N of dissolved nitrogen still has large limitations. Its low concentration makes EA/IRMS laborious, time and sample consuming. Systems based on wet chemical oxidation-IRMS bare the risk of sensitivity loss as well as of fractionation due to incomplete mineralization. In addition, the high solubility of molecular nitrogen in water remains a technical challenge, as it requires additional separation steps to distinguish between physically dissolved nitrogen and bound nitrogen. Further development of our HTC system lead to the implementation of the δ15N determination which now coupled, into a novel total organic carbon (TOC) analyzing system, especially designed for SIA of both, carbon and nitrogen. Integrated, innovative purge and trap technique (peak focusing) for nitrogen with aluminosilicate adsorber and peltier element based cooling system, in combination with high injection volume (up to 3 mL) as well as favorable carrier gas flow significantly improves sensitivity. Down to 1ppm and less total nitrogen can be measured with precision of ≤ 0.5‰. To lower the background caused by physically dissolved nitrogen new, membrane-vacuum based, degasser was designed for online separation of physically dissolved nitrogen. This novel HTC system, "iso TOC cube", provides an innovative tool with large potential in investigation of biogeochemical carbon and nitrogen cycles.

MODELING NITROGEN-CARBON CYCLING AND OXYGEN CONSUMPTION IN BOTTOM SEDIMENTS

EPA Science Inventory

A model framework is presented for simulating nitrogen and carbon cycling at the sediment–water interface, and predicting oxygen consumption by oxidation reactions inside the sediments. Based on conservation of mass and invoking simplifying assumptions, a coupled system of diffus...

Synergetic use of Sentinel-1 and 2 to improve agro-hydrological modeling. Results of groundwater pumping estimates in south-India and nitrogen excess in south-west of France

NASA Astrophysics Data System (ADS)

Ferrant, S.; Le Page, M.; Kerr, Y. H.; Selles, A.; Mermoz, S.; Al-Bitar, A.; Muddu, S.; Gascoin, S.; Marechal, J. C.; Durand, P.; Salmon-Monviola, J.; Ceschia, E.; Bustillo, V.

2016-12-01

Nitrogen transfers at agricultural catchment level are intricately linked to water transfers. Agro-hydrological modeling approaches aim at integrating spatial heterogeneity of catchment physical properties together with agricultural practices to spatially estimate the water and nitrogen cycles. As in hydrology, the calibration schemes are designed to optimize the performance of the temporal dynamics and biases in model simulations, while ignoring the simulated spatial pattern. Yet, crop uses, i.e. transpiration and nitrogen exported by harvest, are the main fluxes at the catchment scale, highly variable in space and time. Geo-information time-series of vegetation and water index with multi-spectral optical detection S2 together with surface roughness time series with C-band radar detection S1 are used to reset soil water holding capacity parameters (depth, porosity) and agricultural practices (sowing date, irrigated area extent) of a crop model coupled with a hydrological model. This study takes two agro-hydrological contexts as demonstrators: 1-spatial nitrogen excess estimation in south-west of France, and 2-groundwater extraction for rice irrigation in south-India. Spatio-temporal patterns are involved in respectively surface water contamination due to over-fertilization and local groundwater shortages due to over-pumping for above rice inundation. Optimized Leaf Area Index profiles are simulated at the satellite images pixel level using an agro-hydrological model to reproduce spatial and temporal crop growth dynamics in south-west of France, improving the in-stream nitrogen fluxes by 12%. Accurate detection of irrigated area extents are obtained with the thresholding method based on optical indices, with a kappa of 0.81 for the dry season 2016. The actual monsoon season is monitored and will be presented. These extents drive the groundwater pumping and are highly variable in time (from 2 to 8% of the total area).

Climate change amplifies gross nitrogen turnover in montane grasslands of Central Europe in both summer and winter seasons.

PubMed

Wang, Changhui; Chen, Zhe; Unteregelsbacher, Sebastian; Lu, Haiyan; Gschwendtner, Silvia; Gasche, Rainer; Kolar, Allison; Schloter, Michael; Kiese, Ralf; Butterbach-Bahl, Klaus; Dannenmann, Michael

2016-09-01

The carbon- and nitrogen-rich soils of montane grasslands are exposed to above-average warming and to altered precipitation patterns as a result of global change. To investigate the consequences of climatic change for soil nitrogen turnover, we translocated intact plant-soil mesocosms along an elevational gradient, resulting in an increase of the mean annual temperature by approx. 2 °C while decreasing precipitation from approx. 1500 to 1000 mm. Following three years of equilibration, we monitored the dynamics of gross nitrogen turnover and ammonia-oxidizing bacteria (AOB) and archaea (AOA) in soils over an entire year. Gross nitrogen turnover and gene levels of AOB and AOA showed pronounced seasonal dynamics. Both summer and winter periods equally contributed to cumulative annual N turnover. However, highest gross N turnover and abundance of ammonia oxidizers were observed in frozen soil of the climate change site, likely due to physical liberation of organic substrates and their rapid turnover in the unfrozen soil water film. This effect was not observed at the control site, where soil freezing did not occur due to a significant insulating snowpack. Climate change conditions accelerated gross nitrogen mineralization by 250% on average. Increased N mineralization significantly stimulated gross nitrification by AOB rather than by AOA. However, climate change impacts were restricted to the 2-6 cm topsoil and rarely occurred at 12-16 cm depth, where generally much lower N turnover was observed. Our study shows that significant mineralization pulses occur under changing climate, which is likely to result in soil organic matter losses with their associated negative impacts on key soil functions. We also show that N cycling processes in frozen soil can be hot moments for N turnover and thus are of paramount importance for understanding seasonal patterns, annual sum of N turnover and possible climate change feedbacks. © 2016 John Wiley & Sons Ltd.

Effect of Freeze-Thaw Cycles on Soil Nitrogen Reactive Transport in a Polygonal Arctic Tundra Ecosystem at Barrow AK Using 3-D Coupled ALM-PFLOTRAN

NASA Astrophysics Data System (ADS)

Yuan, F.; Wang, G.; Painter, S. L.; Tang, G.; Xu, X.; Kumar, J.; Bisht, G.; Hammond, G. E.; Mills, R. T.; Thornton, P. E.; Wullschleger, S. D.

2017-12-01

In Arctic tundra ecosystem soil freezing-thawing is one of dominant physical processes through which biogeochemical (e.g., carbon and nitrogen) cycles are tightly coupled. Besides hydraulic transport, freezing-thawing can cause pore water movement and aqueous species gradients, which are additional mechanisms for soil nitrogen (N) reactive-transport in Tundra ecosystem. In this study, we have fully coupled an in-development ESM(i.e., Advanced Climate Model for Energy, ACME)'s Land Model (ALM) aboveground processes with a state-of-the-art massively parallel 3-D subsurface thermal-hydrology and reactive transport code, PFLOTRAN. The resulting coupled ALM-PFLOTRAN model is a Land Surface Model (LSM) capable of resolving 3-D soil thermal-hydrological-biogeochemical cycles. This specific version of PFLOTRAN has incorporated CLM-CN Converging Trophic Cascade (CTC) model and a full and simple but robust soil N cycle. It includes absorption-desorption for soil NH4+ and gas dissolving-degasing process as well. It also implements thermal-hydrology mode codes with three newly-modified freezing-thawing algorithms which can greatly improve computing performance in regarding to numerical stiffness at freezing-point. Here we tested the model in fully 3-D coupled mode at the Next Generation Ecosystem Experiment-Arctic (NGEE-Arctic) field intensive study site at the Barrow Environmental Observatory (BEO), AK. The simulations show that: (1) synchronous coupling of soil thermal-hydrology and biogeochemistry in 3-D can greatly impact ecosystem dynamics across polygonal tundra landscape; and (2) freezing-thawing cycles can add more complexity to the system, resulting in greater mobility of soil N vertically and laterally, depending upon local micro-topography. As a preliminary experiment, the model is also implemented for Pan-Arctic region in 1-D column mode (i.e. no lateral connection), showing significant differences compared to stand-alone ALM. The developed ALM-PFLOTRAN coupling codes embeded within ESM will be used for Pan-Arctic regional evaluation of climate change-caused ecosystem responses and their feedbacks to climate system at various scales.

40 CFR Table 7 to Subpart Jjj of... - Group 1 Batch Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping, and...

Code of Federal Regulations, 2012 CFR

2012-07-01

... collected—PR. d,e Carbon Adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle.2. Record and report the total...

40 CFR Table 6 to Subpart U of... - Group 1 Batch Front-End Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping...

Code of Federal Regulations, 2012 CFR

2012-07-01

... collected—PR. d,e Carbon adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record of total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. 2. Record and report the total...

40 CFR Table 6 to Subpart U of... - Group 1 Batch Front-End Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping...

Code of Federal Regulations, 2011 CFR

2011-07-01

... collected—PR. d,e Carbon adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record of total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. 2. Record and report the total...

40 CFR Table 7 to Subpart Jjj of... - Group 1 Batch Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping, and...

Code of Federal Regulations, 2010 CFR

2010-07-01

... collected—PR. d,e Carbon Adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle.2. Record and report the total...

40 CFR Table 6 to Subpart U of... - Group 1 Batch Front-End Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping...

Code of Federal Regulations, 2013 CFR

2013-07-01

... collected—PR. d,e Carbon adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record of total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. 2. Record and report the total...

40 CFR Table 6 to Subpart U of... - Group 1 Batch Front-End Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping...

Code of Federal Regulations, 2010 CFR

2010-07-01

... collected—PR. d,e Carbon adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record of total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. 2. Record and report the total...

40 CFR Table 7 to Subpart Jjj of... - Group 1 Batch Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping, and...

Code of Federal Regulations, 2013 CFR

2013-07-01

... collected—PR. d,e Carbon Adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle.2. Record and report the total...

40 CFR Table 7 to Subpart Jjj of... - Group 1 Batch Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping, and...

Code of Federal Regulations, 2011 CFR

2011-07-01

... collected—PR. d,e Carbon Adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle.2. Record and report the total...

40 CFR Table 6 to Subpart U of... - Group 1 Batch Front-End Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping...

Code of Federal Regulations, 2014 CFR

2014-07-01

... collected—PR. d e Carbon adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record of total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle. 2. Record and report the total...

40 CFR Table 7 to Subpart Jjj of... - Group 1 Batch Process Vents and Aggregate Batch Vent Streams-Monitoring, Recordkeeping, and...

Code of Federal Regulations, 2014 CFR

2014-07-01

... collected—PR. d e Carbon Adsorber f a. Total regeneration steam flow or nitrogen flow, or pressure (gauge or absolute) during carbon bed regeneration cycle(s), and 1. Record the total regeneration steam flow or nitrogen flow, or pressure for each carbon bed regeneration cycle.2. Record and report the total...

Soil carbon management in large-scale Earth system modelling: implications for crop yields and nitrogen leaching

NASA Astrophysics Data System (ADS)

Olin, S.; Lindeskog, M.; Pugh, T. A. M.; Schurgers, G.; Wårlind, D.; Mishurov, M.; Zaehle, S.; Stocker, B. D.; Smith, B.; Arneth, A.

2015-11-01

Croplands are vital ecosystems for human well-being and provide important ecosystem services such as crop yields, retention of nitrogen and carbon storage. On large (regional to global)-scale levels, assessment of how these different services will vary in space and time, especially in response to cropland management, are scarce. We explore cropland management alternatives and the effect these can have on future C and N pools and fluxes using the land-use-enabled dynamic vegetation model LPJ-GUESS (Lund-Potsdam-Jena General Ecosystem Simulator). Simulated crop production, cropland carbon storage, carbon sequestration and nitrogen leaching from croplands are evaluated and discussed. Compared to the version of LPJ-GUESS that does not include land-use dynamics, estimates of soil carbon stocks and nitrogen leaching from terrestrial to aquatic ecosystems were improved. Our model experiments allow us to investigate trade-offs between these ecosystem services that can be provided from agricultural fields. These trade-offs are evaluated for current land use and climate and further explored for future conditions within the two future climate change scenarios, RCP (Representative Concentration Pathway) 2.6 and 8.5. Our results show that the potential for carbon sequestration due to typical cropland management practices such as no-till management and cover crops proposed in previous studies is not realised, globally or over larger climatic regions. Our results highlight important considerations to be made when modelling C-N interactions in agricultural ecosystems under future environmental change and the effects these have on terrestrial biogeochemical cycles.

Terrestrial nitrogen–carbon cycle interactions at the global scale

PubMed Central

Zaehle, S.

2013-01-01

Interactions between the terrestrial nitrogen (N) and carbon (C) cycles shape the response of ecosystems to global change. However, the global distribution of nitrogen availability and its importance in global biogeochemistry and biogeochemical interactions with the climate system remain uncertain. Based on projections of a terrestrial biosphere model scaling ecological understanding of nitrogen–carbon cycle interactions to global scales, anthropogenic nitrogen additions since 1860 are estimated to have enriched the terrestrial biosphere by 1.3 Pg N, supporting the sequestration of 11.2 Pg C. Over the same time period, CO2 fertilization has increased terrestrial carbon storage by 134.0 Pg C, increasing the terrestrial nitrogen stock by 1.2 Pg N. In 2001–2010, terrestrial ecosystems sequestered an estimated total of 27 Tg N yr−1 (1.9 Pg C yr−1), of which 10 Tg N yr−1 (0.2 Pg C yr−1) are due to anthropogenic nitrogen deposition. Nitrogen availability already limits terrestrial carbon sequestration in the boreal and temperate zone, and will constrain future carbon sequestration in response to CO2 fertilization (regionally by up to 70% compared with an estimate without considering nitrogen–carbon interactions). This reduced terrestrial carbon uptake will probably dominate the role of the terrestrial nitrogen cycle in the climate system, as it accelerates the accumulation of anthropogenic CO2 in the atmosphere. However, increases of N2O emissions owing to anthropogenic nitrogen and climate change (at a rate of approx. 0.5 Tg N yr−1 per 1°C degree climate warming) will add an important long-term climate forcing. PMID:23713123

SEASONAL VARIATION IN THE BIOGEOCHEMICAL CYCLING OF SESTON IN GRAND TRAVERSE BAY, LAKE MICHIGAN. (R825151)

EPA Science Inventory

This study describes the biogeochemical cycling of seston in Grand Traverse Bay, Lake Michigan. Seston was characterized by carbon and nitrogen elemental and isotopic abundances. Fluorescence, temperature, light transmittance, and concentrations of dissolved inorganic nitrogen we...

Effects of Hypoxia on Sedimentary Nitrogen Cycling in the Pensacola Bay Estuary

EPA Science Inventory

Eutrophic-induced hypoxic events pose a serious threat to estuaries in coastal systems. Hypoxic events are becoming more intense and widespread with changes in land use and increased anthropogenic pressures. Microbial communities involved in sedimentary nitrogen (N) cycling may h...

Nitrogen Oxide Fluxes and Nitrogen Cycling during Postagricultural Succession and Forest Fertilization in the Humid Tropics.

Treesearch

Heather Erickson; Michael Keller; Eric Davidson

2001-01-01

The effects of changes in tropical land use on soil emissions of nitrous oxide (N2O) and nitric oxide (NO) are not well understood. We examined emissions of N2O and NO and their relationships to land use and forest composition, litterfall, soil nitrogen (N) pools and turnover, soil moisture, and patterns of carbon (C) cycling in a lower montane, subtropical wet region...

Global scale analysis and evaluation of an improved mechanistic representation of plant nitrogen and carbon dynamics in the Community Land Model (CLM)

NASA Astrophysics Data System (ADS)

Ghimire, B.; Riley, W. J.; Koven, C. D.; Randerson, J. T.; Mu, M.; Kattge, J.; Rogers, A.; Reich, P. B.

2014-12-01

In many ecosystems, nitrogen is the most limiting nutrient for plant growth and productivity. However mechanistic representation of nitrogen uptake linked to root traits, and functional nitrogen allocation among different leaf enzymes involved in respiration and photosynthesis is currently lacking in Earth System models. The linkage between nitrogen availability and plant productivity is simplistically represented by potential photosynthesis rates, and is subsequently downregulated depending on nitrogen supply and other nitrogen consumers in the model (e.g., nitrification). This type of potential photosynthesis rate calculation is problematic for several reasons. Firstly, plants do not photosynthesize at potential rates and then downregulate. Secondly, there is considerable subjectivity on the meaning of potential photosynthesis rates. Thirdly, there exists lack of understanding on modeling these potential photosynthesis rates in a changing climate. In addition to model structural issues in representing photosynthesis rates, the role of plant roots in nutrient acquisition have been largely ignored in Earth System models. For example, in CLM4.5, nitrogen uptake is linked to leaf level processes (e.g., primarily productivity) rather than root scale process involved in nitrogen uptake. We present a new plant model for CLM with an improved mechanistic presentation of plant nitrogen uptake based on root scale Michaelis Menten kinetics, and stronger linkages between leaf nitrogen and plant productivity by inferring relationships observed in global databases of plant traits (including the TRY database and several individual studies). We also incorporate improved representation of plant nitrogen leaf allocation, especially in tropical regions where significant over-prediction of plant growth and productivity in CLM4.5 simulations exist. We evaluate our improved global model simulations using the International Land Model Benchmarking (ILAMB) framework. We conclude that mechanistic representation of leaf-level nitrogen allocation and a theoretically consistent treatment of competition with belowground consumers leads to overall improvements in CLM4.5's global carbon cycling predictions.

Nitrogen balance for a plantation forest drainage canal on the North Carolina Coastal Plain

Treesearch

Timothy W. Appelboom; George M. Chescheir; R. Wayne Skaggs; J. Wendell Gilliam; Devendra M. Amatya

2009-01-01

Human alteration of the nitrogen cycle has led to increased riverine nitrogen loads, contributing to the eutrophication of lakes, streams, estuaries, and near-coastal oceans. These riverine nitrogen loads are usually less...

Determining the N and O isotope effects of microbial nitrite reduction: the global N cycle implications of an enzyme-dependent isotope effect

NASA Astrophysics Data System (ADS)

Martin, T. S.; Casciotti, K. L.

2014-12-01

The marine nitrogen (N) cycle is a dynamic system of critical importance, since nitrogen is the limiting nutrient in over half of the world's oceans. Denitrification and anammox, the main N loss processes from the ocean, have different effects on carbon cycling and greenhouse gas emission. Understanding the balance between the two processes is vital to understanding the role of the N cycle in global climate change. One approach for investigating these processes is by using stable isotope analysis to estimate the relative magnitudes of N fluxes, particularly for biologically mediated processes. In order to make the most of the currently available isotope analysis techniques, it is necessary to know the isotope effects for each processes occurring in the environment. Nitrite reduction is an important step in denitrification. Previous work had begun to explore the N isotope effects for nitrite reduction, but no oxygen (O) isotope effect has been measured. Additionally, no consideration has been given to the type of nitrite reductase carrying out the reaction. There are two main types of respiratory nitrite reductase, one that is Cu-based and another that is Fe-based. We performed batch culture experiments with denitrifier strains possessing either a Cu-type or Fe-type nitrite reductase. Both N and O isotope effects for nitrite reduction were determined for each of these experiments by measuring the NO2- concentration, as well as the N and O isotopes of nitrite and applying a Rayleigh fractionation model. Both the N and O isotope effects were found to be significantly different between the two types of enzymes. This enzyme-linked difference in isotope effects emphasizes the importance of microbial community composition within the global N cycle.

Modeling the nitrogen cycle one gene at a time

NASA Astrophysics Data System (ADS)

Coles, V.; Stukel, M. R.; Hood, R. R.; Moran, M. A.; Paul, J. H.; Satinsky, B.; Zielinski, B.; Yager, P. L.

2016-02-01

Marine ecosystem models are lagging the revolution in microbial oceanography. As a result, modeling of the nitrogen cycle has largely failed to leverage new genomic information on nitrogen cycling pathways and the organisms that mediate them. We developed a nitrogen based ecosystem model whose community is determined by randomly assigning functional genes to build each organism's "DNA". Microbes are assigned a size that sets their baseline environmental responses using allometric response curves. These responses are modified by the costs and benefits conferred by each gene in an organism's genome. The microbes are embedded in a general circulation model where environmental conditions shape the emergent population. This model is used to explore whether organisms constructed from randomized combinations of metabolic capability alone can self-organize to create realistic oceanic biogeochemical gradients. Community size spectra and chlorophyll-a concentrations emerge in the model with reasonable fidelity to observations. The model is run repeatedly with randomly-generated microbial communities and each time realistic gradients in community size spectra, chlorophyll-a, and forms of nitrogen develop. This supports the hypothesis that the metabolic potential of a community rather than the realized species composition is the primary factor setting vertical and horizontal environmental gradients. Vertical distributions of nitrogen and transcripts for genes involved in nitrification are broadly consistent with observations. Modeled gene and transcript abundance for nitrogen cycling and processing of land-derived organic material match observations along the extreme gradients in the Amazon River plume, and they help to explain the factors controlling observed variability.

[Bacterial anaerobic ammonia oxidation (Anammox) in the marine nitrogen cycle--a review].

PubMed

Hong, Yiguo; Li, Meng; Gu, Jidong

2009-03-01

Anaerobic ammonium oxidation (Anammox) is a microbial oxidation process of ammonium, with nitrite as the electron acceptor and dinitrogen gas as the main product, and is performed by a clade of deeply branched Planctomycetes, which possess an intracytoplasmic membrane-bounded organelle, the anammoxosome, for the Anammox process. The wide distribution of Anammox bacteria in different natural environments has been greatly modified the traditional view of biogeochemical cycling of nitrogen, in which microbial denitrifier is considered as the only organism to respire nitrate and nitrite to produce nitric and nitrous oxides, and eventually nitrogen gas. More evidences indicate that Anammox is responsible for the production of more than 50% of oceanic N2 and plays an important role in global nitrogen cycling. Moreover, due to the close relationship between nitrogen and carbon cycling, it is anticipated that Anammox process might also affect the concentration of CO2 in the atmosphere, and influence the global climate change. In addition, the simultaneous transformation of nitrite and ammonium in wastewater treatment by Anammox would allow a 90% reduction in operational costs and provide a much more effective biotechnological process for wastewater treatment.

Dynamic comparison on the usage of probiotics in organic wastewater treatment under aerobic conditions in a diurnal environment.

PubMed

Liu, Jun; Liu, Yali; Li, Guoqin; Shen, Junda; Tao, Zhengrong; Tian, Yong; Chen, Li; Li, Chunmei; Lu, Lizhi

2016-12-01

This study aims at evaluating and comparing pollution removal in wastewater treatment via the use of probiotics alone or in combination under aerobic conditions in diurnal cycles. Herein, 650 mL of organic wastewater was stored in 1-L conical flasks and then randomly divided into three treatment groups, each experiment was repeated three times. Group A was supplemented with 2% (v/v) photosynthetic bacteria (PSB; Rhodopseudomonas palustris) alone; group B was supplemented with 2% (v/v) B. subtilis alone; and group C was supplemented with 1% (v/v) PSB and 1% (v/v) B. subtilis. Results showed that the pH increases were in the order: group A < group C < group B. The performance of the probiotics in terms of ammonia nitrogen and total nitrogen (TN) removal was in the order: group A < group C < group B, whereas in terms of total organic matter (TOC) and total carbon (TC) removal, the order was group C < group B < group A. These results showed that the effect of probiotics combination treatment on ammonia nitrogen and TN removal was better than that of using B. subtilis alone, but worse than that of using PSB alone. The effect of B. subtilis alone treatment on TOC and TC removal was better than that of using PSB alone, but the combination of PSB and B. subtilis showed greater benefits on TOC and TC removal. Photosynthetic bacteria and B. subtilis were used in this study to investigate carbon and nitrogen metabolism via the use of different probiotics and then study further on comparing and achieving the best pollution removal performance in probiotics alone or in combination treatment. To make observations realistic, the experiments were conducted under aerobic conditions in a diurnal cycle environment.

Warming increases nutrient mobilization and gaseous nitrogen removal from sediments across cascade reservoirs.

PubMed

Zhou, Xingpeng; Chen, Nengwang; Yan, Zhihao; Duan, Shuiwang

2016-12-01

Increases in water temperature, as a result of climate change, may influence biogeochemical cycles, sediment-water fluxes and consequently environmental sustainability. Effects of rising temperature on dynamics of nitrate, nitrite, ammonium, dissolved inorganic nitrogen (DIN), dissolved reactive phosphorus (DRP), dissolved organic carbon (DOC) and gaseous nitrogen (N 2 and N 2 O) were examined in a subtropical river (the Jiulong River, southeast China) by microcosm experiments. Slurry sediments and overlying water were collected from three continuous cascade reservoirs, and laboratory incubations were performed at four temperature gradients (5 °C, 15 °C, 25 °C and 35 °C). Results indicated: (1) warming considerably increased sediment ammonium, DIN and DOC fluxes to overlying water; (2) warming increased retention of nitrate, and to a lesser extent, nitrite, corresponding to increases in N 2 and N 2 O emission; (3) DRP was retained but released from Fe/Al-P enriched sediments at high temperature (35 °C) due to enhanced coupled transformation of carbon and nitrogen with oxygen deficiency. Using relationships between sediment fluxes and temperature, a projected 2.3°C-warming in future would increase ammonium flux from sediment by 7.0%-16.8%, while increasing nitrate flux into sediment by 8.9%-28.6%. Moreover, substrates (e.g., grain size, carbon availability) influenced nutrient delivery and cycling across cascade reservoirs. This study highlights that warming would increase bioreactive nutrient (i.e., ammonium and phosphate) mobilization with limited gaseous N removal from sediments, consequently deteriorating water quality and increasing eutrophication with future climate change. Copyright © 2016 Elsevier Ltd. All rights reserved.

[Research progress on the mechanisms and influence factors of nitrogen retention and transformation in riparian ecosystems.

PubMed

Yang, Dan; Fan, Da Yong; Xie, Zong Qiang; Zhang, Ai Ying; Xiong, Gao Ming; Zhao, Chang Ming; Xu, Wen Ting

2016-03-01

Riparian zone, the ecological transition buffer between terrestrial and aquatic ecosystems (rivers, lakes, reservoirs, wetlands, and other specific water bodies) with unique eco-hydrological and biogeochemical processes, is the last ecological barrier to prevent ammonium, nitrate and other non-point nitrogen pollutants from adjacent water bodies. Based on a summary of current progress of related studies, we found there were two major mechanisms underpinning the nitrogen retention/removal by the riparian ecosystems: 1) the relative locations of nitrogen in the soil-plant-atmosphere continuum system could be altered by riparian vegetation; 2) nitrogen could also be denitrified and then removed permanently by microorganisms in riparian soil. However, which process is more critical for the nitrogen removal remains elusive. Due to large variances of hydro-dynamic, vegetation, microbial, and soil substrate properties in nitrogen retention and transformation with various watersheds, it's difficult to identify which factor is the most important one driving nitrogen cycle in the riparian ecosystems. It is also found that the limitation of study methods, paucity of data at large spatial and temporal scale, and no consensus on the riparian width, are the three major reasons leading to large variances of the results among studies. In conclusion, it is suggested that further efforts should be focused on: 1) the detailed analysis on the successive environmental factors with long-term; 2) the application of a comprehensive method combining mathematical models, geographic information system, remote sensing and quantified technique (such as the coupled technique of the isotopic tracer and gas exchange measurement); 3) the implementation of studies at large temporal and spatial scales. It is sure that, these efforts can help to optimize the nitrogen removal pathways in the riparian ecosystems and provide scientific basis for ecosystem management.

Fasting or fear: disentangling the roles of predation risk and food deprivation in the nitrogen metabolism of consumers.

PubMed

Dalton, Christopher M; Tracy, Karen E; Hairston, Nelson G; Flecker, Alexander S

2018-03-01

Predators can alter nutrient cycles simply by inducing stress in prey. This stress accelerates prey's protein catabolism, nitrogen waste production, and nitrogen cycling. Yet predators also reduce the feeding rates of their prey, inducing food deprivation that is expected to slow protein catabolism and nitrogen cycling. The physiology of prey under predation risk thus balances the influences of predation risk and food deprivation, and this balance is central to understanding the role of predators in nutrient cycles. We explored the separate and combined effects of predation risk and food deprivation on prey physiology and nutrient cycling by exposing guppies (Poecilia reticulata) to predation risk and food deprivation in a 2 × 2 design. We simulated predation risk using chemical cues from a natural predator of guppies, and we created food deprivation by rationing food availability. We measured guppy response as food consumption, growth, tissue energy density, tissue carbon:nitrogen, and nitrogen (N) excretion and assimilation. We found that N-linked physiological processes (N consumption, assimilation, excretion) were strongly affected by predation risk, independent of food consumption. Guppies excreted substantially less under predation risk than they did under food deprivation or control conditions. These results suggest that predation risk, per se, triggers physiological changes in guppies that increase N retention and decrease N excretion. We suggest that slower N metabolism under predation risk is an adaptive response that minimizes protein loss in the face of predictable, predator-induced food restriction. Notably, N metabolism shares common hormonal control with food seeking behavior, and we speculate that increased N retention is a direct and immediate result of reduced food seeking under predation risk. Contrary to predation-stress-based hypotheses for how predators affect nutrient cycling by prey, our result indicates that even short-term exposure to predators may decelerate, rather than accelerate, the speed of N cycling by suppressing N turnover by prey. © 2018 by the Ecological Society of America.

Biomass and nutrient dynamics associated with slash fires in neotropical dry forests

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kauffman, J.B.; Cummings, D.L.; Sanford, R.L. Jr.

1993-01-01

Unprecedented rates of deforestation and biomass burning in tropical dry forests are dramatically influencing biogeochemical cycles, resulting in resource depletion, declines in biodiversity, and atmospheric pollution. We quantified the effects of deforestation and varying levels of slash-fire severity on nutrient losses and redistribution in a second-growth tropical dry forest ([open quotes]Caatinga[close quotes]) near Serra Talhada, Pernambuco, Brazil. Total aboveground biomass prior to burning was [approx]74 Mg/ha. Nitrogen and phosphorus concentrations were highest in litter, leaves attached to slash, and fine wood debris (

Dimensions of biodiversity of oceanic nitrogen cycling: nutrient co-limitation, nitrogen substrate preferences and more.

NASA Astrophysics Data System (ADS)

Zehr, J.; Mills, M. M.; Shilova, I. N.; Turk-Kubo, K.; Robidart, J.; van Dijken, G.; Bjorkman, K. M.; Whitt, D. B.; Wai, B.; Pampin Baro, J.; Hogan, M.; Rapp, I.; Zakem, E.; Fredrickson, A.; Leahy, B.; Linney, M.; Santiago, A.; Follows, M. J.; Achterberg, E. P.; Kolber, Z.; Church, M. J.; Arrigo, K. R.

2016-02-01

We conducted the research cruise: Nutrient Effects on Marine microOrganisms (NEMO) onboard the R/V New Horizon (NH1417: August 18 to September 16, 2014) between the ports of San Diego, CA and Honolulu, HI. The three major objectives of the cruise were to: 1) evaluate genetic, physiological and phylogenetic responses of marine phytoplankton communities in the North Pacific Subtropical Gyre to different nitrogen (N) substrates and to determine how other nutrients (iron, phosphorus) impact N utilization; 2) characterize the physical processes and dynamics in support of the biological processes; and 3) characterize the diversity and activities of microbial communities in the upper water column in relation to the nutrient availability. Several incubation experiments were conducted along the cruise transect to assess the effect of nutrients on microbial communities. The results showed that N addition resulted in increased chlorophyll a (chl a) and rates of CO2 fixation at most sites, but Prochlorococcus, Synechococcus and picoekaryotic phytoplankton had different responses to urea, ammonium and nitrate. In contrast, chl a and CO2 fixation did not respond to additions of single nutrient (e.g. N, P or Fe alone) at the westernmost experiment (151°W), where the simultaneous addition of N and P was required for stimulation. The physical dynamics were studied through high-resolution surveys of eddy dipole features as well as diel sampling at two locations. Additionally, we characterized an extensive bloom that occurred near the critical latitude (29°N, 140°W) from mid July to the end of September; a typical but still enigmatic event. Here, we present a summary of the initial observations and findings from the NEMO cruise with data including physics, nutrient concentrations, chl a, primary productivity and microbial community composition. The results of this research cruise will help in assessing how ocean N cycling and ecosystem functions will respond to global climate change.

Beneficial effects of aluminum enrichment on nitrogen-fixing cyanobacteria in the South China Sea.

PubMed

Liu, Jiaxing; Zhou, Linbin; Ke, Zhixin; Li, Gang; Shi, Rongjun; Tan, Yehui

2018-04-01

Few studies focus on the effects of aluminum (Al) on marine nitrogen-fixing cyanobacteria, which play important roles in the ocean nitrogen cycling. To examine the effects of Al on the nitrogen-fixing cyanobacteria, bioassay experiments in the oligotrophic South China Sea (SCS) and culture of Crocosphaera watsonii in the laboratory were conducted. Field data showed that 200 nM Al stimulated the growth and the nitrogenase gene expression of Trichodesmium and unicellular diazotrophic cyanobacterium group A, and the nitrogen fixation rates of the whole community. Laboratory experiments demonstrated that Al stimulated the growth and nitrogen fixation of C. watsonii under phosphorus limited conditions. Both field and laboratory results indicated that Al could stimulate the growth of diazotrophs and nitrogen fixation in oligotrophic oceans such as the SCS, which is likely related to the utilization of phosphorus, implying that Al plays an important role in the ocean nitrogen and carbon cycles by influencing nitrogen fixation. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effects of model structural uncertainty on carbon cycle projections: biological nitrogen fixation as a case study

NASA Astrophysics Data System (ADS)

Wieder, William R.; Cleveland, Cory C.; Lawrence, David M.; Bonan, Gordon B.

2015-04-01

Uncertainties in terrestrial carbon (C) cycle projections increase uncertainty of potential climate feedbacks. Efforts to improve model performance often include increased representation of biogeochemical processes, such as coupled carbon-nitrogen (N) cycles. In doing so, models are becoming more complex, generating structural uncertainties in model form that reflect incomplete knowledge of how to represent underlying processes. Here, we explore structural uncertainties associated with biological nitrogen fixation (BNF) and quantify their effects on C cycle projections. We find that alternative plausible structures to represent BNF result in nearly equivalent terrestrial C fluxes and pools through the twentieth century, but the strength of the terrestrial C sink varies by nearly a third (50 Pg C) by the end of the twenty-first century under a business-as-usual climate change scenario representative concentration pathway 8.5. These results indicate that actual uncertainty in future C cycle projections may be larger than previously estimated, and this uncertainty will limit C cycle projections until model structures can be evaluated and refined.

Key ecological responses to nitrogen are altered by climate change

USGS Publications Warehouse

Greaver, T.L.; Clark, C.M.; Compton, J.E.; Vallano, D.; Talhelm, A. F.; Weaver, C.P.; Band, L.E.; Baron, Jill S.; Davidson, E.A.; Tague, C.L.; Felker-Quinn, E.; Lynch, J.A.; Herrick, J.D.; Liu, L.; Goodale, C.L.; Novak, K. J.; Haeuber, R. A.

2016-01-01

Climate change and anthropogenic nitrogen deposition are both important ecological threats. Evaluating their cumulative effects provides a more holistic view of ecosystem vulnerability to human activities, which would better inform policy decisions aimed to protect the sustainability of ecosystems. Our knowledge of the cumulative effects of these stressors is growing, but we lack an integrated understanding. In this Review, we describe how climate change alters key processes in terrestrial and freshwater ecosystems related to nitrogen cycling and availability, and the response of ecosystems to nitrogen addition in terms of carbon cycling, acidification and biodiversity.

Key ecological responses to nitrogen are altered by climate change

NASA Astrophysics Data System (ADS)

Greaver, T. L.; Clark, C. M.; Compton, J. E.; Vallano, D.; Talhelm, A. F.; Weaver, C. P.; Band, L. E.; Baron, J. S.; Davidson, E. A.; Tague, C. L.; Felker-Quinn, E.; Lynch, J. A.; Herrick, J. D.; Liu, L.; Goodale, C. L.; Novak, K. J.; Haeuber, R. A.

2016-09-01

Climate change and anthropogenic nitrogen deposition are both important ecological threats. Evaluating their cumulative effects provides a more holistic view of ecosystem vulnerability to human activities, which would better inform policy decisions aimed to protect the sustainability of ecosystems. Our knowledge of the cumulative effects of these stressors is growing, but we lack an integrated understanding. In this Review, we describe how climate change alters key processes in terrestrial and freshwater ecosystems related to nitrogen cycling and availability, and the response of ecosystems to nitrogen addition in terms of carbon cycling, acidification and biodiversity.

Faunal isotope records reveal trophic and nutrient dynamics in twentieth century Yellowstone grasslands.

PubMed

Fox-Dobbs, Kena; Nelson, Abigail A; Koch, Paul L; Leonard, Jennifer A

2012-10-23

Population sizes and movement patterns of ungulate grazers and their predators have fluctuated dramatically over the past few centuries, largely owing to overharvesting, land-use change and historic management. We used δ(13)C and δ(15)N values measured from bone collagen of historic and recent gray wolves and their potential primary prey from Yellowstone National Park to gain insight into the trophic dynamics and nutrient conditions of historic and modern grasslands. The diet of reintroduced wolves closely parallels that of the historic population. We suggest that a significant shift in faunal δ(15)N values over the past century reflects impacts of anthropogenic environmental changes on grassland ecosystems, including grazer-mediated shifts in grassland nitrogen cycle processes.

Faunal isotope records reveal trophic and nutrient dynamics in twentieth century Yellowstone grasslands

PubMed Central

Fox-Dobbs, Kena; Nelson, Abigail A.; Koch, Paul L.; Leonard, Jennifer A.

2012-01-01

Population sizes and movement patterns of ungulate grazers and their predators have fluctuated dramatically over the past few centuries, largely owing to overharvesting, land-use change and historic management. We used δ13C and δ15N values measured from bone collagen of historic and recent gray wolves and their potential primary prey from Yellowstone National Park to gain insight into the trophic dynamics and nutrient conditions of historic and modern grasslands. The diet of reintroduced wolves closely parallels that of the historic population. We suggest that a significant shift in faunal δ15N values over the past century reflects impacts of anthropogenic environmental changes on grassland ecosystems, including grazer-mediated shifts in grassland nitrogen cycle processes. PMID:22675135

Fifty years dynamics of Russian forests: Impacts on the earth system

NASA Astrophysics Data System (ADS)

Shvidenko, Anatoly; Schepaschenko, Dmitry; Kraxner, Florian

2015-04-01

The paper presents a succinct history of Russian forests during the time period of 1960-2010 and reanalysis of their impacts on global carbon and nitrogen cycles. We present dynamics of land cover change (including major categories of forest land) and biometric characteristics of forests (species composition, age structure, growing stock volume etc.) based on reconciling all relevant information (data of forest and land inventories, official forest management statistics, multi-sensor remote sensing products, data of forest pathological monitoring etc.). Completeness and reliability of background information was different during the period of the study. Forest inventory data and official statistics were partially modified based on relevant auxiliary information and used for 1960-2000. The analysis for 2001-2010 was provided with a crucial use of multi-sensor remote sensing data. For this last period a hybrid forest mask was developed at resolution of 230m by integration of 8 remote sensing products and using geographical weighted regression and data of crowdsourcing. During the considered 50 years forested areas of Russia substantially increased by middle of 1990s and slightly declined (at about 5%) after. Indicators needed for assessment of carbon and nitrogen cycles of forest ecosystems were defined for the entire period (aggregated estimates by decades for 1960-2000 and yearly for 2001-2010) based on unified methodology with some peculiarities following from availability of information. Major results were obtained by landscape-ecosystem method that uses as comprehensive as possible empirical and semi-empirical information on ecosystems and landscapes in form of an Integrated Land Information System and complimentary combines pool- and flux-based methods. We discuss and quantify major drivers of forest cover change (socio-economic, environmental and climatic) including forest management (harvest, reforestation and afforestation), impacts of seasonal weather on carbon fluxes (Net Primary Production, Heterotrophic Respiration), disturbances (fire, outbreaks of insects and diseases), and industrial pressure (land change, air pollution, water and soil contamination). During the entire period Russian forests provided the net carbon sink in range from 350-700 Tg C yr-1 with inter-annual variability in limits of 10-15% for the entire country. The overall sink is a result of superposition of trends of major carbon fluxes (caused by removal of harvested wood and use of forest products; land cover change; impact of climatic trends; change of disturbance regimes) and inter-annual variation of seasonal weather. Major indicators of the nitrogen cycle are assessed and discussed in connection with the carbon cycle. We provide comparative analysis of other results published for the considered period taken into account successive improvements of information and methodology used for studying the major biogeochemical cycles.

Non-equilbrium dynamics of ecosystem processes in a changing world

NASA Astrophysics Data System (ADS)

Reid, Joseph Pignatello

The relatively mild and stable climate of the last 10,000 years betrays a history of environmental variability and rapid changes. Humans have recently accelerated global environmental change, ushering in the Anthropocene. Meeting accelerating demands for food, energy, and goods and services has accelerated species extinctions, shows of reactive nitrogen and phosphorus, and warming of the atmosphere. I address the over- arching question of how ecosystems will respond to changing and variable environments through several focused studies. Each study examines an ecosystem response to ex- pected environmental changes in the future. To address how the changing environment affects the sizes and turnover rates of slowly and quickly cycling soil carbon pools, I analyzed the responses of grassland soils to simulated species diversity loss, increased deposition of nitrogen and increased atmospheric CO2. I used a soil respiration experiment to fit models of soil carbon pool turnover to respired carbon dioxide. Species diversity, nitrogen deposition and atmospheric CO2 had no effect on the total soil carbon after 8 years of treatments. Although total soil carbon did not change, the rates of cycling in the fast and slow pools changed in response to elevated CO2 and diversity loss treatments. Nitrogen treatments increased the size of the slowly cycling carbon pool. Precipitation variability has increased around most of the world since the industrial revolution. I used plant mesocosms in a greenhouse experiment to manipulate rainfall variability and mycorrhizal associations. I hypothesized that 1) rewetting events re- sult in higher nitrogen uxes from dry soils than moist soils, 2) a repeated pattern of events caused by low-frequency simulated rainfall results in higher nitrogen uxes and 3) the better ability of ectomycorrhizal fungi relative to arbuscular mycorrhizal fungi to decompose and assimilate organic nitrogen reduces leaching losses of nitrogen caused by both rewetting events and patterns of repeated events. In response to individual rewetting events, drier soils released more nitrate and total nitrogen than wetter soils. Ectomycorrhizal treatments slightly reduced the effect of antecedent soil moisture on total nitrogen and nitrate losses from rewetting events. This supports my hypotheses iii that drier soils release more nitrogen after rainfall events and that ectomycorrhizal asso- ciations can reduce nitrogen losses associated with soil rewetting events. However, only ammonium increased in proportion to the variance in rainfall quantity and mycorrhizal treatments had no effect, largely refuting my hypothesis that soils would release more nitrogen when exposed to higher variability patterns of rainfall. The current pressures that humans place on the environment are only expected to increase as populations and incomes continue to climb. The more than 9 billion peo- ple expected on the planet by 2050 require food, energy, shelter and other goods and services. Historically, producing those benefits has resulted in environmental damage, especially nitrogen pollution through agricultural fertilizers, atmospheric nitrogen de- position and human waste. I developed a model to test the effectiveness of various technologies and strategies to reduce the environmental harms associated with meeting the needs of human well-being. I tested the effects of increased crop yields through genetic gains, increased nutrient efficiency in agricultural systems, reduced meat con- sumption, reduced food waste and improved wastewater treatment on nitrogen yield. The tested levers were mildly effective at reducing nitrogen yield from the baseline busi- ness as usual (BAU) scenario, but still resulted in at least 15% greater nitrogen yield than the present. Applied in combination, in the 'Super Ag' scenario, the levers out performed the sum of their contributions when applied singly. Some levers were more effective in some places than others. Taken together, these results suggest that there is no one solution, and that solutions will be most effective when developed for local conditions and applied in combination.

Biological soil crusts emit large amounts of NO and HONO affecting the nitrogen cycle in drylands

NASA Astrophysics Data System (ADS)

Tamm, Alexandra; Wu, Dianming; Ruckteschler, Nina; Rodríguez-Caballero, Emilio; Steinkamp, Jörg; Meusel, Hannah; Elbert, Wolfgang; Behrendt, Thomas; Sörgel, Matthias; Cheng, Yafang; Crutzen, Paul J.; Su, Hang; Pöschl, Ulrich; Weber, Bettina

2016-04-01

Dryland systems currently cover ˜40% of the world's land surface and are still expanding as a consequence of human impact and global change. In contrast to that, information on their role in global biochemical processes is limited, probably induced by the presumption that their sparse vegetation cover plays a negligible role in global balances. However, spaces between the sparse shrubs are not bare, but soils are mostly covered by biological soil crusts (biocrusts). These biocrust communities belong to the oldest life forms, resulting from an assembly between soil particles and cyanobacteria, lichens, bryophytes, and algae plus heterotrophic organisms in varying proportions. Depending on the dominating organism group, cyanobacteria-, lichen-, and bryophyte-dominated biocrusts are distinguished. Besides their ability to restrict soil erosion they fix atmospheric carbon and nitrogen, and by doing this they serve as a nutrient source in strongly depleted dryland ecosystems. In this study we show that a fraction of the nitrogen fixed by biocrusts is metabolized and subsequently returned to the atmosphere in the form of nitric oxide (NO) and nitrous acid (HONO). These gases affect the radical formation and oxidizing capacity within the troposphere, thus being of particular interest to atmospheric chemistry. Laboratory measurements using dynamic chamber systems showed that dark cyanobacteria-dominated crusts emitted the largest amounts of NO and HONO, being ˜20 times higher than trace gas fluxes of nearby bare soil. We showed that these nitrogen emissions have a biogenic origin, as emissions of formerly strongly emitting samples almost completely ceased after sterilization. By combining laboratory, field, and satellite measurement data we made a best estimate of global annual emissions amounting to ˜1.1 Tg of NO-N and ˜0.6 Tg of HONO-N from biocrusts. This sum of 1.7 Tg of reactive nitrogen emissions equals ˜20% of the soil release under natural vegetation according to the latest IPCC report. In summary, our measurements show that dryland emissions of nitrogen oxides are largely driven by biocrusts and not by the underlying soil. As precipitation patterns, which influence biocrust activity, are affected by climate change, alterations in global nitrogen oxide emissions are to be expected. Thus, the role of biocrusts in the global cycling of reactive nitrogen needs to be followed and also implemented in regional and global models of biogeochemistry, air chemistry and climate.

Towards a Representation of Flexible Canopy N Stiochiometry for Land-surface Models Based on Optimality Concepts

NASA Astrophysics Data System (ADS)

Zaehle, S.; Caldararu, S.

2015-12-01

Foliar nitrogen (N) is know to acclimate to environmental conditions. One particular pertinent response is the general decline in foliar N following exposure to elevated levels of atmospheric CO2 (eCO2). Associated with reduced foliar N is an increased plant nitrogen-use efficiency, which contributes to the plants' sustained growth response to eCO2 in the absence of any counteracting litter N feedbacks. Flexible leaf N thus has important consequences for the mid- to long-term response of terrestrial ecosystems to eCO2. The current generation of land-surface models including a prognostic N cycle generally employ heuristic, and simply mass-balancing parameterisations to estimate changes in stoichiometry given altered N and carbon (C) availability. This generation generally and substantially overestimates the decline of foliar N (and thus the increase in plant nitrogen use efficiency) observed in Free Air CO2 Enrichment Experiments (FACE; Zaehle et al. 2014). In this presentation, I develop a simple, prognostic and dynamic representation of flexible foliar N for use in land-surface models by maximising the marginal gain of net assimilation with respect to the energy investment to generate foliar area and foliar N. I elucidate the underlying assumptions required to simulate the commonly observed decline in foliar N with eCO2 under different scenarios of N availability (Feng et al. 2015). References: Zaehle, Sönke, Belinda E Medlyn, Martin G De Kauwe, Anthony P Walker, Michael C Dietze, Hickler Thomas, Yiqi Luo, et al. 2014. "Evaluation of 11 Terrestrial Carbon-Nitrogen Cycle Models Against Observations From Two Temperate Free-Air CO2 Enrichment Studies." New Phytologist 202 (3): 803-22. doi:10.1111/nph.12697. Feng, Zhaozhong, Tobias RUtting, Håkan Pleijel, GORAN WALLIN, Peter B Reich, Claudia I Kammann, Paul C D Newton, Kazuhiko Kobayashi, Yunjian Luo, and Johan Uddling. 2015. "Constraints to Nitrogen Acquisition of Terrestrial Plants Under Elevated CO 2." Global Change Biology 21 (8): 3152-68. doi:10.1111/gcb.12938.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scott, Nicole M.; Hess, Matthias; Bouskill, Nick J.

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance ofmore » genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. Furthermore, these data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems.« less

200 years of soil carbon nitrogen and phosphorus change across the United Kingdom

NASA Astrophysics Data System (ADS)

Tipping, Ed; Quinton, John; Davies, Jessica; Bell, Vicky; Carnell, Ed; Dragosits, Ulli; Muhammed, Shibu; Naden, Pam; Stuart, Marianne; Tomlinson, Sam; Whitmore, Andy; Wu, Lianhai

2015-04-01

Human intervention over the last 200 years has resulted in vast changes to the fluxes of nitrogen (N) and phosphorus (P) entering the United Kingdom's landscape. Industrialisation has resulted in N deposition, agricultural intensification has seen widespread use of N and P fertilizers and societal actions have resulted in extensive land use change. To understand the consequences of these anthropogenic inputs for our soils, freshwaters and ecosystems it is necessary to take an integrated long term large scale approach. Integration across the compartments of the critical zone - from atmosphere, plants to soil and stream - is necessary in order to trace the effects of deposition, fertilization, cultivation and land use change. Coherent integration of C, N and P dynamics is also crucial, as biological processes tightly couple these cycles, so that in unison C N and P control the generation of biomass and consequent production of soil organic matter, having knock on effects for dissolved and particulate fluxes and ecosystem function. The Long-Term Large-Scale (LTLS) project is developing an integrated model that simulates the pools and fluxes of carbon, nitrogen and phosphorus (C, N, and P) between atmospheric, vegetation, soil and aquatic systems for the whole of the United Kingdom for a period spanning from the onset of the industrial revolution up until the present day. In this paper we will present results demonstrating the changes in the soil macronutrient cycles in response to agrarian and social change in the United Kingdom over the last 200 years

Incorporation of a dynamic root distribution into CLM4.5: Evaluation of carbon and water fluxes over the Amazon

NASA Astrophysics Data System (ADS)

Wang, Yuanyuan; Xie, Zhenghui; Jia, Binghao

2016-09-01

Roots are responsible for the uptake of water and nutrients by plants and have the plasticity to dynamically respond to different environmental conditions. However, most land surface models currently prescribe rooting profiles as a function only of vegetation type, with no consideration of the surroundings. In this study, a dynamic rooting scheme, which describes root growth as a compromise between water and nitrogen availability, was incorporated into CLM4.5 with carbon-nitrogen (CN) interactions (CLM4.5-CN) to investigate the effects of a dynamic root distribution on eco-hydrological modeling. Two paired numerical simulations were conducted for the Tapajos National Forest km83 (BRSa3) site and the Amazon, one using CLM4.5-CN without the dynamic rooting scheme and the other including the proposed scheme. Simulations for the BRSa3 site showed that inclusion of the dynamic rooting scheme increased the amplitudes and peak values of diurnal gross primary production (GPP) and latent heat flux (LE) for the dry season, and improved the carbon (C) and water cycle modeling by reducing the RMSE of GPP by 0.4 g C m-2 d-1, net ecosystem exchange by 1.96 g C m-2 d-1, LE by 5.0 W m-2, and soil moisture by 0.03 m3 m-3, at the seasonal scale, compared with eddy flux measurements, while having little impact during the wet season. For the Amazon, regional analysis also revealed that vegetation responses (including GPP and LE) to seasonal drought and the severe drought of 2005 were better captured with the dynamic rooting scheme incorporated.

Ecosystem services altered by human changes in the nitrogen cycle: A new perspective for assessment

EPA Science Inventory

Human alteration of the nitrogen (N) cycle has produced benefits for health and well-being, but excess N has altered many ecosystems and degraded air and water quality. US regulations mandate protection of the environment in terms that directly connect to ecosystem services. Here...

Thinking outside the channel: modeling nitrogen cycling in networked river ecosystems

Treesearch

Ashley M. Helton; Geoffrey C. Poole; Judy L. Meyer; Wilfred M. Wollheim; Bruce J. Peterson; Patrick J. Mulholland; Emily S. Bernhardt; Jack A. Stanford; Clay Arango; Linda R. Ashkenas; Lee W. Cooper; Walter K. Dodds; Stanley V. Gregory; Robert O. Hall; Stephen K. Hamilton; Sherri L. Johnson; William H. McDowell; Jody D. Potter; Jennifer L. Tank; Suzanne M. Thomas; H. Maurice Valett; Jackson R. Webster; Lydia Zeglin

2011-01-01

Agricultural and urban development alters nitrogen and other biogeochemical cycles in rivers worldwide. Because such biogeochemical processes cannot be measured empirically across whole river networks, simulation models are critical tools for understanding river-network biogeochemistry. However, limitations inherent in current models restrict our ability to simulate...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diner, Rachel E.; Schwenck, Sarah M.; McCrow, John P.

Diatoms are a dominant group of eukaryotic phytoplankton that contribute substantially to global primary production and the cycling of important elements such as carbon and nitrogen. Heterotrophic bacteria, including members of the gammaproteobacteria, are commonly associated with diatom populations and may rely on them for organic carbon while potentially competing with them for other essential nutrients. Considering that bacterioplankton drive oceanic release of CO 2 (i.e., bacterial respiration) while diatoms drive ocean carbon sequestration vial the biological pump, the outcome of such competition could influence the direction and magnitude of carbon flux in the upper ocean. Nitrate availability is commonlymore » a determining factor for the growth of diatom populations, particularly in coastal and upwelling regions. Diatoms as well as many bacterial species can utilize nitrate, however the ability of bacteria to compete for nitrate may be hindered by carbon limitation. Here we have developed a genetically tractable model system using the pennate diatom Phaeodactylurn tricomuturn and the widespread heterotrophic bacteria Alterornonas macleodii to examine carbon-nitrogen dynamics. While subsisting solely on P. tricomutum derived carbon. A. macleodii does not appear to be an effective competitor for nitrate, and may in fact benefit the diatom; particularly in stationary phase. However, allochthonous dissolved organic carbon addition in the form of pyruvate triggers A. macleodii proliferation and nitrate uptake, leading to reduced P. tricornutum growth. Nitrate reductase deficient mutants of A. macleodii ( ΔnasA) do not exhibit such explosive growth and associated competitive ability in response to allochthonous carbon when nitrate is the sole nitrogen source, but could survive by utilizing solely P. tricomutum-derived nitrogen. Furthermore, allocthonous carbon addition enables wild-type A. macleodii to rescue nitrate reductase deficient P. tricomutum populations from nitrogen starvation, and RNA-seq transcriptomic evidence supports nitrogen-based interactions between diatoms and bacteria at the molecular level. As a result, this study provides key insights into the roles of carbon and nitrogen in phytoplankton-bacteria dynamics and lays the foundation for developing a mechanistic understanding of these interactions using co-culturing and genetic manipulation.« less

Genetic manipulation of competition for nitrate between heterotrophic bacteria and diatoms

DOE PAGES

Diner, Rachel E.; Schwenck, Sarah M.; McCrow, John P.; ...

2016-06-09

Diatoms are a dominant group of eukaryotic phytoplankton that contribute substantially to global primary production and the cycling of important elements such as carbon and nitrogen. Heterotrophic bacteria, including members of the gammaproteobacteria, are commonly associated with diatom populations and may rely on them for organic carbon while potentially competing with them for other essential nutrients. Considering that bacterioplankton drive oceanic release of CO 2 (i.e., bacterial respiration) while diatoms drive ocean carbon sequestration vial the biological pump, the outcome of such competition could influence the direction and magnitude of carbon flux in the upper ocean. Nitrate availability is commonlymore » a determining factor for the growth of diatom populations, particularly in coastal and upwelling regions. Diatoms as well as many bacterial species can utilize nitrate, however the ability of bacteria to compete for nitrate may be hindered by carbon limitation. Here we have developed a genetically tractable model system using the pennate diatom Phaeodactylurn tricomuturn and the widespread heterotrophic bacteria Alterornonas macleodii to examine carbon-nitrogen dynamics. While subsisting solely on P. tricomutum derived carbon. A. macleodii does not appear to be an effective competitor for nitrate, and may in fact benefit the diatom; particularly in stationary phase. However, allochthonous dissolved organic carbon addition in the form of pyruvate triggers A. macleodii proliferation and nitrate uptake, leading to reduced P. tricornutum growth. Nitrate reductase deficient mutants of A. macleodii ( ΔnasA) do not exhibit such explosive growth and associated competitive ability in response to allochthonous carbon when nitrate is the sole nitrogen source, but could survive by utilizing solely P. tricomutum-derived nitrogen. Furthermore, allocthonous carbon addition enables wild-type A. macleodii to rescue nitrate reductase deficient P. tricomutum populations from nitrogen starvation, and RNA-seq transcriptomic evidence supports nitrogen-based interactions between diatoms and bacteria at the molecular level. As a result, this study provides key insights into the roles of carbon and nitrogen in phytoplankton-bacteria dynamics and lays the foundation for developing a mechanistic understanding of these interactions using co-culturing and genetic manipulation.« less

[Dynamics of microbial biomass carbon and nitrogen during foliar litter decomposition under artificial forest gap in Pinus massoniana plantation.

PubMed

Zhang, Ming Jin; Chen, Liang Hua; Zhang, Jian; Yang, Wan Qin; Liu, Hua; Li, Xun; Zhang, Yan

2016-03-01

Nowadays large areas of plantations have caused serious ecological problems such as soil degradation and biodiversity decline. Artificial tending thinning and construction of mixed forest are frequently used ways when we manage plantations. To understand the effect of this operation mode on nutrient cycle of plantation ecosystem, we detected the dynamics of microbial bio-mass carbon and nitrogen during foliar litter decomposition of Pinus massoniana and Toona ciliate in seven types of gap in different sizes (G 1 : 100 m 2 , G 2 : 225 m 2 , G 3 : 400 m 2 , G 4 : 625 m 2 , G 5 : 900 m 2 , G 6 : 1225 m 2 , G 7 : 1600 m 2 ) of 42-year-old P. massoniana plantations in a hilly area of the upper Yang-tze River. The results showed that small and medium-sized forest gaps(G 1 -G 5 ) were more advantageous for the increment of microbial biomass carbon and nitrogen in the process of foliar litter decomposition. Along with the foliar litter decomposition during the experiment (360 d), microbial biomass carbon (MBC), microbial biomass nitrogen (MBN) in P. massoniana foliar litter and MBN in T. ciliata foliar litter first increased and then decreased, and respectively reached the maxima 9.87, 0.22 and 0.80 g·kg -1 on the 180 th d. But the peak (44.40 g·kg -1 ) of MBC in T. ciliata foliar litter appeared on the 90 th d. Microbial biomass carbon and nitrogen in T. ciliate was significantly higher than that of P. massoniana during foliar litter decomposition. Microbial biomass carbon and nitrogen in foliar litter was not only significantly associated with average daily temperature and the water content of foliar litter, but also closely related to the change of the quality of litter. Therefore, in the thinning, forest gap size could be controlled in the range of from 100 to 900 m 2 to facilitate the increase of microbial biomass carbon and nitrogen in the process of foliar litter decomposition, accelerate the decomposition of foliar litter and improve soil fertility of plantations.

Nitrogen removal and intentional nitrous oxide production from reject water in a coupled nitritation/nitrous denitritation system under real feed-stream conditions.

PubMed

Weißbach, Max; Thiel, Paul; Drewes, Jörg E; Koch, Konrad

2018-05-01

A Coupled Aerobic-anoxic Nitrous Decomposition Operation (CANDO) was performed over five months to investigate the performance and dynamics of nitrogen elimination and nitrous oxide production from digester reject water under real feed-stream conditions. A 93% conversion of ammonium to nitrite could be maintained for adapted seed sludge in the first stage (nitritation). The second stage (nitrous denitritation), inoculated with conventional activated sludge, achieved a conversion of 70% of nitrite to nitrous oxide after only 12 cycles of operation. The development of an alternative feeding strategy and the addition of a coagulant (FeCl 3 ) facilitated stable operation and process intensification. Under steady-state conditions, nitrite was reliably eliminated and different nitrous oxide harvesting strategies were assessed. Applying continuous removal increased N 2 O yields by 16% compared to the application of a dedicated stripping phase. These results demonstrate the feasible application of the CANDO process for nitrogen removal and energy recovery from ammonia rich wastewater. Copyright © 2018 Elsevier Ltd. All rights reserved.

Meta-analysis of high-latitude nitrogen-addition and warming studies implies ecological mechanisms overlooked by land models

DOE PAGES

Bouskill, N. J.; Riley, W. J.; Tang, J. Y.

2014-12-11

Accurate representation of ecosystem processes in land models is crucial for reducing predictive uncertainty in energy and greenhouse gas feedbacks with the climate. Here we describe an observational and modeling meta-analysis approach to benchmark land models, and apply the method to the land model CLM4.5 with two versions of belowground biogeochemistry. We focused our analysis on the aboveground and belowground responses to warming and nitrogen addition in high-latitude ecosystems, and identified absent or poorly parameterized mechanisms in CLM4.5. While the two model versions predicted similar soil carbon stock trajectories following both warming and nitrogen addition, other predicted variables (e.g., belowgroundmore » respiration) differed from observations in both magnitude and direction, indicating that CLM4.5 has inadequate underlying mechanisms for representing high-latitude ecosystems. On the basis of observational synthesis, we attribute the model–observation differences to missing representations of microbial dynamics, aboveground and belowground coupling, and nutrient cycling, and we use the observational meta-analysis to discuss potential approaches to improving the current models. However, we also urge caution concerning the selection of data sets and experiments for meta-analysis. For example, the concentrations of nitrogen applied in the synthesized field experiments (average = 72 kg ha -1 yr -1) are many times higher than projected soil nitrogen concentrations (from nitrogen deposition and release during mineralization), which precludes a rigorous evaluation of the model responses to likely nitrogen perturbations. Overall, we demonstrate that elucidating ecological mechanisms via meta-analysis can identify deficiencies in ecosystem models and empirical experiments.« less

Meta-analysis of high-latitude nitrogen-addition and warming studies implies ecological mechanisms overlooked by land models

NASA Astrophysics Data System (ADS)

Bouskill, N. J.; Riley, W. J.; Tang, J. Y.

2014-12-01

Accurate representation of ecosystem processes in land models is crucial for reducing predictive uncertainty in energy and greenhouse gas feedbacks with the climate. Here we describe an observational and modeling meta-analysis approach to benchmark land models, and apply the method to the land model CLM4.5 with two versions of belowground biogeochemistry. We focused our analysis on the aboveground and belowground responses to warming and nitrogen addition in high-latitude ecosystems, and identified absent or poorly parameterized mechanisms in CLM4.5. While the two model versions predicted similar soil carbon stock trajectories following both warming and nitrogen addition, other predicted variables (e.g., belowground respiration) differed from observations in both magnitude and direction, indicating that CLM4.5 has inadequate underlying mechanisms for representing high-latitude ecosystems. On the basis of observational synthesis, we attribute the model-observation differences to missing representations of microbial dynamics, aboveground and belowground coupling, and nutrient cycling, and we use the observational meta-analysis to discuss potential approaches to improving the current models. However, we also urge caution concerning the selection of data sets and experiments for meta-analysis. For example, the concentrations of nitrogen applied in the synthesized field experiments (average = 72 kg ha-1 yr-1) are many times higher than projected soil nitrogen concentrations (from nitrogen deposition and release during mineralization), which precludes a rigorous evaluation of the model responses to likely nitrogen perturbations. Overall, we demonstrate that elucidating ecological mechanisms via meta-analysis can identify deficiencies in ecosystem models and empirical experiments.

Community Composition of Nitrous Oxide-Related Genes in Salt Marsh Sediments Exposed to Nitrogen Enrichment.

PubMed

Angell, John H; Peng, Xuefeng; Ji, Qixing; Craick, Ian; Jayakumar, Amal; Kearns, Patrick J; Ward, Bess B; Bowen, Jennifer L

2018-01-01

Salt marshes provide many key ecosystem services that have tremendous ecological and economic value. One critical service is the removal of fixed nitrogen from coastal waters, which limits the negative effects of eutrophication resulting from increased nutrient supply. Nutrient enrichment of salt marsh sediments results in higher rates of nitrogen cycling and, commonly, a concurrent increase in the flux of nitrous oxide, an important greenhouse gas. Little is known, however, regarding controls on the microbial communities that contribute to nitrous oxide fluxes in marsh sediments. To address this disconnect, we generated profiles of microbial communities and communities of micro-organisms containing specific nitrogen cycling genes that encode several enzymes ( amoA, norB, nosZ) related to nitrous oxide flux from salt marsh sediments. We hypothesized that communities of microbes responsible for nitrogen transformations will be structured by nitrogen availability. Taxa that respond positively to high nitrogen inputs may be responsible for the elevated rates of nitrogen cycling processes measured in fertilized sediments. Our data show that, with the exception of ammonia-oxidizing archaea, the community composition of organisms involved in the production and consumption of nitrous oxide was altered under nutrient enrichment. These results suggest that previously measured rates of nitrous oxide production and consumption are likely the result of changes in community structure, not simply changes in microbial activity.

In Situ One-Step Synthesis of Hierarchical Nitrogen-Doped Porous Carbon for High Performance Supercapacitors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jeon, Ju Won; Sharma, Ronish; Meduri, Praveen

2014-04-30

Electrochemical performance of the existing state-of-the art capacitors is not very high, key scientific barrier is that its charge storage mechanism wholly depends on adsorption of electrolyte on electrode. We present a novel method for the synthesis of nitrogen -doped porous carbons and address the drawback by precisely controlling composition and surface area. Nitrogen-doped porous carbon was synthesized using a self-sacrificial template technique without any additional nitrogen and carbon sources. They exhibited exceptionally high capacitance (239 Fg-1) due to additional pseudocapacitance originating from doped nitrogen. Cycling tests showed no obvious capacitance decay even after 10,000 cycles, which meets the requirementmore » of commercial supercapacitors. Our method is simple and highly efficient for the production of large quantities of nitrogen-doped porous carbons.« less

Mechanical properties of a nitrogen-bearing austenitic steel during static and cycle deformation

NASA Astrophysics Data System (ADS)

Blinov, E. V.; Terent'ev, V. F.; Prosvirnin, D. V.

2016-09-01

The mechanical properties of a nitrogen-bearing corrosion-resistant austenitic steel containing 0.311% nitrogen have been studied during static and cyclic deformation. It is found that the steel having an ultimate strength of 930 MPa exhibits a plasticity of 33%. The endurance limit under repeated tension at 106 loading cycles is 400 MPa. The propagation of a fatigue crack at low and high amplitudes of cyclic deformation follows a ductile fracture mechanism with the presence of fatigue grooves.

Long-Term Cultivation and Metagenomics Reveal Ecophysiology of Previously Uncultivated Thermophiles Involved in Biogeochemical Nitrogen Cycle

PubMed Central

Kato, Shingo; Sakai, Sanae; Hirai, Miho; Tasumi, Eiji; Nishizawa, Manabu; Suzuki, Katsuhiko; Takai, Ken

2018-01-01

Many thermophiles thriving in a natural high-temperature environment remain uncultivated, and their ecophysiological functions in the biogeochemical cycle remain unclear. In the present study, we performed long-term continuous cultivation at 65°C and 70°C using a microbial mat sample, collected from a subsurface geothermal stream, as the inoculum, and reconstructed the whole genome of the maintained populations using metagenomics. Some metagenome-assembled genomes (MAGs), affiliated into phylum-level bacterial and archaeal clades without cultivated representatives, contained genes involved in nitrogen metabolism including nitrification and denitrification. Our results show genetic components and their potential interactions for the biogeochemical nitrogen cycle in a subsurface geothermal environment. PMID:29459499

'Trophic' and 'source' amino acids in trophic estimation: a likely metabolic explanation.

PubMed

O'Connell, T C

2017-06-01

Amino acid nitrogen isotopic analysis is a relatively new method for estimating trophic position. It uses the isotopic difference between an individual's 'trophic' and 'source' amino acids to determine its trophic position. So far, there is no accepted explanation for the mechanism by which the isotopic signals in 'trophic' and 'source' amino acids arise. Yet without a metabolic understanding, the utility of nitrogen isotopic analyses as a method for probing trophic relations, at either bulk tissue or amino acid level, is limited. I draw on isotopic tracer studies of protein metabolism, together with a consideration of amino acid metabolic pathways, to suggest that the 'trophic'/'source' groupings have a fundamental metabolic origin, to do with the cycling of amino-nitrogen between amino acids. 'Trophic' amino acids are those whose amino-nitrogens are interchangeable, part of a metabolic amino-nitrogen pool, and 'source' amino acids are those whose amino-nitrogens are not interchangeable with the metabolic pool. Nitrogen isotopic values of 'trophic' amino acids will reflect an averaged isotopic signal of all such dietary amino acids, offset by the integrated effect of isotopic fractionation from nitrogen cycling, and modulated by metabolic and physiological effects. Isotopic values of 'source' amino acids will be more closely linked to those of equivalent dietary amino acids, but also modulated by metabolism and physiology. The complexity of nitrogen cycling suggests that a single identifiable value for 'trophic discrimination factors' is unlikely to exist. Greater consideration of physiology and metabolism should help in better understanding observed patterns in nitrogen isotopic values.

Nitrogen-doped carbon spheres: A new high-energy-density and long-life pseudo-capacitive electrode material for electrochemical flow capacitor.

PubMed

Hou, Shujin; Wang, Miao; Xu, Xingtao; Li, Yandong; Li, Yanjiang; Lu, Ting; Pan, Likun

2017-04-01

One of the most challenging issues in developing electrochemical flow capacitor (EFC) technology is the design and synthesis of active electrode materials with high energy density and long cycle life. However, in practical cases, the energy density and cycle ability obtained currently cannot meet the practical need. In this work, we propose a new active material, nitrogen-doped carbon spheres (NCSs), as flowable electrodes for EFC application. The NCSs were prepared via one-pot hydrothermal synthesis in the presence of resorcinol/formaldehyde as carbon precursors and melamine as nitrogen precursor, followed by carbonization in nitrogen flow at various temperatures. The results of EFC experiments demonstrate that NCSs obtained at 800°C exhibit a high energy density of 13.5Whkg -1 and an excellent cycle ability, indicating the superiority of NCSs for EFC application. Copyright © 2016 Elsevier Inc. All rights reserved.

Nitrogen removal and its relationship with the nitrogen-cycle genes and microorganisms in the horizontal subsurface flow constructed wetlands with different design parameters.

PubMed

Chen, Jun; Ying, Guang-Guo; Liu, You-Sheng; Wei, Xiao-Dong; Liu, Shuang-Shuang; He, Liang-Ying; Yang, Yong-Qiang; Chen, Fan-Rong

2017-07-03

This study aims to investigate nitrogen removal and its relationship with the nitrogen-cycle genes and microorganisms in the horizontal subsurface flow constructed wetlands (CWs) with different design parameters. Twelve mesocosm-scale CWs with four substrates and three hydraulic loading rates were set up in the outdoor. The result showed the CWs with zeolite as substrate and HLR of 20 cm/d were selected as the best choice for the TN and NH 3 -N removal. It was found that the single-stage mesocosm-scale CWs were incapable to achieve high removals of TN and NH 3 -N due to inefficient nitrification process in the systems. This was demonstrated by the lower abundance of the nitrification genes (AOA and AOB) than the denitrification genes (nirK and nirS), and the less diverse nitrification microorganisms than the denitrification microorganisms in the CWs. The results also show that microorganism community structure including nitrogen-cycle microorganisms in the constructed wetland systems was affected by the design parameters especially the substrate type. These findings show that nitrification is a limiting factor for the nitrogen removal by CWs.

Elucidation of rice rhizosphere metagenome in relation to methane and nitrogen metabolism under elevated carbon dioxide and temperature using whole genome metagenomic approach.

PubMed

Bhattacharyya, P; Roy, K S; Das, M; Ray, S; Balachandar, D; Karthikeyan, S; Nayak, A K; Mohapatra, T

2016-01-15

Carbon (C) and nitrogen (N) mineralization is one of the key processes of biogeochemical cycling in terrestrial ecosystem in general and rice ecology in particular. Rice rhizosphere is a rich niche of microbial diversity influenced by change in atmospheric temperature and concentration of carbon dioxide (CO2). Structural changes in microbial communities in rhizosphere influence the nutrient cycling. In the present study, the bacterial diversity and population dynamics were studied under ambient CO2 (a-CO2) and elevated CO2+temperature (e-CO2T) in lowland rice rhizosphere using whole genome metagenomic approach. The whole genome metagenomic sequence data of lowland rice exhibited the dominance of bacterial communities including Proteobacteria, Firmicutes, Acidobacteria, Actinobacteria and Planctomycetes. Interestingly, four genera related to methane production namely, Methanobacterium, Methanosphaera, Methanothermus and Methanothermococcus were absent in a-CO2 but noticed under e-CO2T. The acetoclastic pathway was found as the predominant pathway for methanogenesis, whereas, the serine pathway was found as the principal metabolic pathway for CH4 oxidation in lowland rice. The abundances of reads of enzymes in the acetoclastic methanogenesis pathway and serine pathways of methanotrophy were much higher in e-CO2T (328 and 182, respectively) as compared with a-CO2 (118 and 98, respectively). Rice rhizosphere showed higher structural diversities and functional activities in relation to N metabolism involving nitrogen fixation, assimilatory and dissimilatory nitrate reduction and denitrification under e-CO2T than that of a-CO2. Among the three pathways of N metabolism, dissimilarity pathways were predominant in lowland rice rhizosphere and more so under e-CO2T. Consequently, under e-CO2T, CH4 emission, microbial biomass nitrogen (MBN) and dehydrogenase activities were 45%, 20% and 35% higher than a-CO2, respectively. Holistically, a high bacterial diversity and abundances of C and N decomposing bacteria in lowland rice rhizosphere were found under e-CO2T, which could be explored further for their specific role in nutrient cycling, sustainable agriculture and environment management. Copyright © 2015 Elsevier B.V. All rights reserved.

Mechanical properties of carbon steel depending on the rate of the dose build-up of nitrogen and argon ions

NASA Astrophysics Data System (ADS)

Vorob'ev, V. L.; Bykov, P. V.; Bayankin, V. Ya.; Shushkov, A. A.; Vakhrushev, A. V.

2014-08-01

The effect of pulsed irradiation with argons and nitrogen ions on the mechanical properties, morphology, and structure of the surface layers of carbon steel St3 (0.2% C, 0.4% Mn, 0.15% Si, and Fe for balance) has been investigated depending on the rate of dose build-up at an average ion current density of 10, 20, and 40 μA/cm2. It has been established that the fatigue life and microhardness of surface layers increase in the entire studied range of dose build-up rates. This seems to be due to the hardening of the surface layers, which resulted from the generation of radiation defects and the irradiation-dynamic effect of fast ions. The sample irradiated by argon ions at the lowest of the selected dose build-up rates j av = 10 μA/cm2 withstands the largest number of cycles to failure.

Sliding mode control of dissolved oxygen in an integrated nitrogen removal process in a sequencing batch reactor (SBR).

PubMed

Muñoz, C; Young, H; Antileo, C; Bornhardt, C

2009-01-01

This paper presents a sliding mode controller (SMC) for dissolved oxygen (DO) in an integrated nitrogen removal process carried out in a suspended biomass sequencing batch reactor (SBR). The SMC performance was compared against an auto-tuning PI controller with parameters adjusted at the beginning of the batch cycle. A method for cancelling the slow DO sensor dynamics was implemented by using a first order model of the sensor. Tests in a lab-scale reactor showed that the SMC offers a better disturbance rejection capability than the auto-tuning PI controller, furthermore providing reasonable performance in a wide range of operation. Thus, SMC becomes an effective robust nonlinear tool to the DO control in this process, being also simple from a computational point of view, allowing its implementation in devices such as industrial programmable logic controllers (PLCs).

Nitrogen cycling following mountain pine beetle disturbance in lodgepole pine forests of Greater Yellowstone

Treesearch

Jacob M. Griffin; Monica G. Turner; Martin Simard

2011-01-01

Widespread bark beetle outbreaks are currently affecting multiple conifer forest types throughout western North America, yet many ecosystem-level consequences of this disturbance are poorly understood. We quantified the effect of mountain pine beetle (Dendroctonus ponderosae) outbreak on nitrogen (N) cycling through litter, soil, and vegetation in...

Tightly-coupled plant-soil nitrogen cycling: Implications for multiple ecosystem services on organic farms across an intensively managed agricultural landscape

USDA-ARS?s Scientific Manuscript database

Variability among farms across an agricultural landscape may reveal diverse biophysical contexts and experiences that show innovations and insights to improve nitrogen (N) cycling and yields, and thus the potential for multiple ecosystem services. In order to assess potential tradeoffs between yield...

Long-life Li/polysulphide batteries with high sulphur loading enabled by lightweight three-dimensional nitrogen/sulphur-codoped graphene sponge

PubMed Central

Zhou, Guangmin; Paek, Eunsu; Hwang, Gyeong S.; Manthiram, Arumugam

2015-01-01

Lithium–sulphur batteries with a high theoretical energy density are regarded as promising energy storage devices for electric vehicles and large-scale electricity storage. However, the low active material utilization, low sulphur loading and poor cycling stability restrict their practical applications. Herein, we present an effective strategy to obtain Li/polysulphide batteries with high-energy density and long-cyclic life using three-dimensional nitrogen/sulphur codoped graphene sponge electrodes. The nitrogen/sulphur codoped graphene sponge electrode provides enough space for a high sulphur loading, facilitates fast charge transfer and better immobilization of polysulphide ions. The hetero-doped nitrogen/sulphur sites are demonstrated to show strong binding energy and be capable of anchoring polysulphides based on first-principles calculations. As a result, a high specific capacity of 1,200 mAh g−1 at 0.2C rate, a high-rate capacity of 430 mAh g−1 at 2C rate and excellent cycling stability for 500 cycles with ∼0.078% capacity decay per cycle are achieved. PMID:26182892

Seasonality and nitrogen supply modify carbon partitioning in understory vegetation of a boreal coniferous forest.

PubMed

Hasselquist, N J; Metcalfe, D B; Marshall, J D; Lucas, R W; Högberg, P

2016-03-01

Given the strong coupling between the carbon (C) and nitrogen (N) cycles, there is substantial interest in understanding how N availability affects C cycling in terrestrial ecosystems, especially in ecosystems limited by N. However, most studies in temperate and boreal forests have focused on the effects of N addition on tree growth. By comparison, less is known about the effects of N availability on the cycling of C in understory vegetation despite some evidence that dwarf shrubs, mosses, and lichens play an important role in the forest C balance. In this study, we used an in situ 13CO2 pulse-labeling technique to examine the short-term dynamics of C partitioning in understory vegetation in three boreal Pinus sylvestris forest stands exposed to different rates of N addition: a low and high N addition that receive annual additions of NH4NO3 of 20 and 100 kg N/ha, respectively, and this is a typo. It should be an unfertilized control. Labeling was conducted at two distinct periods (early vs. late growing season), which provided a seasonal picture of how N addition affects C dynamics in understory vegetation. In contrast to what has been found in trees, there was no obvious trend in belowground C partitioning in ericaceous plants in response to N additions or seasonality. Increasing N addition led to a greater percentage of 13C being incorporated into ericaceous leaves with a high turnover, whereas high rates of N addition strongly reduced the incorporation of 13C into less degradable moss tissues. Addition of N also resulted in a greater percentage of the 13C label being respired back to the atmosphere and an overall reduction in total understory carbon use efficiency. Taken together, our results suggest a faster cycling of C in understory vegetation with increasing N additions; yet the magnitude of this general response was strongly dependent on the amount of N added and varied seasonally. These results provide some of the first in situ C and N partitioning estimates for plants growing under the complex web of resource limitations in the boreal understory.

Quantification of the impact of macrophytes on oxygen dynamics and nitrogen retention in a vegetated lowland river

NASA Astrophysics Data System (ADS)

Desmet, N. J. S.; Van Belleghem, S.; Seuntjens, P.; Bouma, T. J.; Buis, K.; Meire, P.

When macrophytes are growing in the river, the vegetation induces substantial changes to the water quality. Some effects are the result of direct interactions, such as photosynthetic activity or nutrient uptake, whereas others may be attributed to indirect effects of the water plants on hydrodynamics and river processes. This research focused on the direct effect of macrophytes on oxygen dynamics and nutrient cycling. Discharge, macrophyte biomass density, basic water quality, dissolved oxygen and nutrient concentrations were in situ monitored throughout the year in a lowland river (Nete catchment, Belgium). In addition, various processes were investigated in more detail in multiple ex situ experiments. The field and aquaria measurement results clearly demonstrated that aquatic plants can exert considerable impact on dissolved oxygen dynamics in a lowland river. When the river was dominated by macrophytes, dissolved oxygen concentrations varied from 5 to 10 mg l -1. Considering nutrient retention, it was shown that the investigated in-stream macrophytes could take up dissolved inorganic nitrogen (DIN) from the water column at rates of 33-50 mg N kgdry matter-1 h. And DIN fluxes towards the vegetation were found to vary from 0.03 to 0.19 g N ha -1 h -1 in spring and summer. Compared to the measured changes in DIN load over the river stretch, it means that about 3-13% of the DIN retention could be attributed to direct nitrogen uptake from the water by macrophytes. Yet, the role of macrophytes in rivers should not be underrated as aquatic vegetation also exerts considerable indirect effects that may have a greater impact than the direct fixation of nutrients into the plant biomass.

Cost-effectiveness of nitrogen mitigation by alternative household wastewater management technologies.

PubMed

Wood, Alison; Blackhurst, Michael; Hawkins, Troy; Xue, Xiaobo; Ashbolt, Nicholas; Garland, Jay

2015-03-01

Household wastewater, especially from conventional septic systems, is a major contributor to nitrogen pollution. Alternative household wastewater management technologies provide similar sewerage management services but their life cycle costs and nitrogen flow implications remain uncertain. This paper addresses two key questions: (1) what are the total costs, nitrogen mitigation potential, and cost-effectiveness of a range of conventional and alternative municipal wastewater treatment technologies, and (2) what uncertainties influence these outcomes and how can we improve our understanding of these technologies? We estimate a household nitrogen mass balance for various household wastewater treatment systems and combine this mass balance with life cycle cost assessment to calculate the cost-effectiveness of nitrogen mitigation, which we define as nitrogen removed from the local watershed. We apply our methods to Falmouth, MA, where failing septic systems have caused heightened eutrophication in local receiving water bodies. We find that flushing and dry (composting) urine-diversion toilets paired with conventional septic systems for greywater management demonstrate the lowest life cycle cost and highest cost-effectiveness (dollars per kilogram of nitrogen removed from the watershed). Composting toilets are also attractive options in some cases, particularly best-case nitrogen mitigation. Innovative/advanced septic systems designed for high-level nitrogen removal are cost-competitive options for newly constructed homes, except at their most expensive. A centralized wastewater treatment plant is the most expensive and least cost-effective option in all cases. Using a greywater recycling system with any treatment technology increases the cost without adding any nitrogen removal benefits. Sensitivity analysis shows that these results are robust considering a range of cases and uncertainties. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

A network model shows the importance of coupled processes in the microbial N cycle in the Cape Fear River Estuary

NASA Astrophysics Data System (ADS)

Hines, David E.; Lisa, Jessica A.; Song, Bongkeun; Tobias, Craig R.; Borrett, Stuart R.

2012-06-01

Estuaries serve important ecological and economic functions including habitat provision and the removal of nutrients. Eutrophication can overwhelm the nutrient removal capacity of estuaries and poses a widely recognized threat to the health and function of these ecosystems. Denitrification and anaerobic ammonium oxidation (anammox) are microbial processes responsible for the removal of fixed nitrogen and diminish the effects of eutrophication. Both of these microbial removal processes can be influenced by direct inputs of dissolved inorganic nitrogen substrates or supported by microbial interactions with other nitrogen transforming pathways such as nitrification and dissimilatory nitrate reduction to ammonium (DNRA). The coupling of nitrogen removal pathways to other transformation pathways facilitates the removal of some forms of inorganic nitrogen; however, differentiating between direct and coupled nitrogen removal is difficult. Network modeling provides a tool to examine interactions among microbial nitrogen cycling processes and to determine the within-system history of nitrogen involved in denitrification and anammox. To examine the coupling of nitrogen cycling processes, we built a nitrogen budget mass balance network model in two adjacent 1 cm3 sections of bottom water and sediment in the oligohaline portion of the Cape Fear River Estuary, NC, USA. Pathway, flow, and environ ecological network analyses were conducted to characterize the organization of nitrogen flow in the estuary and to estimate the coupling of nitrification to denitrification and of nitrification and DNRA to anammox. Centrality analysis indicated NH4+ is the most important form of nitrogen involved in removal processes. The model analysis further suggested that direct denitrification and coupled nitrification-denitrification had similar contributions to nitrogen removal while direct anammox was dominant to coupled forms of anammox. Finally, results also indicated that partial nitrification-anammox may play an important role in anammox nitrogen removal in the Cape Fear River Estuary.

Permafrost carbon−climate feedback is sensitive to deep soil carbon decomposability but not deep soil nitrogen dynamics

PubMed Central

Koven, Charles D.; Lawrence, David M.; Riley, William J.

2015-01-01

Permafrost soils contain enormous amounts of organic carbon whose stability is contingent on remaining frozen. With future warming, these soils may release carbon to the atmosphere and act as a positive feedback to climate change. Significant uncertainty remains on the postthaw carbon dynamics of permafrost-affected ecosystems, in particular since most of the carbon resides at depth where decomposition dynamics may differ from surface soils, and since nitrogen mineralized by decomposition may enhance plant growth. Here we show, using a carbon−nitrogen model that includes permafrost processes forced in an unmitigated warming scenario, that the future carbon balance of the permafrost region is highly sensitive to the decomposability of deeper carbon, with the net balance ranging from 21 Pg C to 164 Pg C losses by 2300. Increased soil nitrogen mineralization reduces nutrient limitations, but the impact of deep nitrogen on the carbon budget is small due to enhanced nitrogen availability from warming surface soils and seasonal asynchrony between deeper nitrogen availability and plant nitrogen demands. Although nitrogen dynamics are highly uncertain, the future carbon balance of this region is projected to hinge more on the rate and extent of permafrost thaw and soil decomposition than on enhanced nitrogen availability for vegetation growth resulting from permafrost thaw. PMID:25775603

U.S. nitrogen science plan focuses collaborative efforts

NASA Astrophysics Data System (ADS)

Holland, E. A.; Guenther, A.; Lee-Taylor, J.; Bertman, S. B.; Carroll, M. A.; Shepson, P. B.; Sparks, J. P.

Nitrogen is a major nutrient in terrestrial ecosystems and an important catalyst in tropospheric photochemistry. Over the last century human activities have dramatically increased inputs of reactive nitrogen (Nr, the combination of oxidized, reduced, and organically bound nitrogen) to the Earth system (Figure 1). Nitrogen cycle perturbations have compromised air quality and human health, acidified ecosystems, and degraded and eutrophied lakes and coastal estuaries [Vitousek et al., 1997a, 1997b; Rabalais, 2002; Howarth et al., 2003; Townsend et al., 2003; Galloway et al., 2004].Increased Nr affects global climate. Use of agricultural fertilizers such as ammonium nitrate leads to increased soil production of nitrous oxide (N2O), which has 320 times the global warming potential of carbon dioxide (CO2). Emission of nitrogen oxides (NOx = nitric oxide, NO + nitrogen dioxide, NO2) from fossil fuel burning leads to increases in tropospheric ozone, another greenhouse gas. Ozone is phytotoxic, and may reduce terrestrial CO2 sequestration. To predict the effects of nitrogen cycling changes under changing climatic conditions, there needs to be a better understanding of the global nitrogen budget.

Coupled hydrological and biogeochemical processes controlling variability of nitrogen species in streamflow during autumn in an upland forest

USGS Publications Warehouse

Sebestyen, Stephen D.; Shanley, James B.; Boyer, Elizabeth W.; Kendall, Carol; Doctor, Daniel H.

2014-01-01

Autumn is a season of dynamic change in forest streams of the northeastern United States due to effects of leaf fall on both hydrology and biogeochemistry. Few studies have explored how interactions of biogeochemical transformations, various nitrogen sources, and catchment flow paths affect stream nitrogen variation during autumn. To provide more information on this critical period, we studied (1) the timing, duration, and magnitude of changes to stream nitrate, dissolved organic nitrogen (DON), and ammonium concentrations; (2) changes in nitrate sources and cycling; and (3) source areas of the landscape that most influence stream nitrogen. We collected samples at higher temporal resolution for a longer duration than typical studies of stream nitrogen during autumn. This sampling scheme encompassed the patterns and extremes that occurred during base flow and stormflow events of autumn. Base flow nitrate concentrations decreased by an order of magnitude from 5.4 to 0.7 µmol L−1 during the week when most leaves fell from deciduous trees. Changes to rates of biogeochemical transformations during autumn base flow explained the low nitrate concentrations; in-stream transformations retained up to 72% of the nitrate that entered a stream reach. A decrease of in-stream nitrification coupled with heterotrophic nitrate cycling were primary factors in the seasonal nitrate decline. The period of low nitrate concentrations ended with a storm event in which stream nitrate concentrations increased by 25-fold. In the ensuing weeks, peak stormflow nitrate concentrations progressively decreased over closely spaced, yet similarly sized events. Most stormflow nitrate originated from nitrification in near-stream areas with occasional, large inputs of unprocessed atmospheric nitrate, which has rarely been reported for nonsnowmelt events. A maximum input of 33% unprocessed atmospheric nitrate to the stream occurred during one event. Large inputs of unprocessed atmospheric nitrate show direct and rapid effects on forest streams that may be widespread, although undocumented, throughout nitrogen-polluted temperate forests. In contrast to a week-long nitrate decline during peak autumn litterfall, base flow DON concentrations increased after leaf fall and remained high for 2 months. Dissolved organic nitrogen was hydrologically flushed to the stream from riparian soils during stormflow. In contrast to distinct seasonal changes in base flow nitrate and DON concentrations, ammonium concentrations were typically at or below the detection limit, similar to the rest of the year. Our findings reveal couplings among catchment flow paths, nutrient sources, and transformations that control seasonal extremes of stream nitrogen in forested landscapes.

Geochemistry of the Amazon Estuary

USGS Publications Warehouse

Smoak, Joseph M.; Krest, James M.; Swarzenski, Peter W

2006-01-01

The Amazon River supplies more freshwater to the ocean than any other river in the world. This enormous volume of freshwater forces the estuarine mixing out of the river channel and onto the continental shelf. On the continental shelf, the estuarine mixing occurs in a very dynamic environment unlike that of a typical estuary. The tides, the wind, and the boundary current that sweeps the continental shelf have a pronounced influence on the chemical and biological processes occurring within the estuary. The dynamic environment, along with the enormous supply of water, solutes and particles makes the Amazon estuary unique. This chapter describes the unique features of the Amazon estuary and how these features influence the processes occurring within the estuary. Examined are the supply and cycling of major and minor elements, and the use of naturally occurring radionuclides to trace processes including water movement, scavenging, sediment-water interaction, and sediment accumulation rates. The biogeochemical cycling of carbon, nitrogen, and phosphorus, and the significances of the Amazon estuary in the global mass balance of these elements are examined.

Advanced development receiver thermal vacuum tests with cold wall

NASA Technical Reports Server (NTRS)

Sedgwick, Leigh M.

1991-01-01

The first ever testing of a full size solar dynamic heat receiver using high temperature thermal energy storage was completed. The heat receiver was designed to meet the requirements for operation on the Space Station Freedom. The purpose of the test program was to quantify the receiver thermodynamic performance, its operating temperatures, and thermal response to changes in environmental and power module interface boundary conditions. The heat receiver was tested in a vacuum chamber with liquid nitrogen cold shrouds and an aperture cold plate to partially simulate a low Earth orbit environment. The cavity of the receiver was heated by an infrared quartz lamp heater with 30 independently controllable zones to produce flux distributions typical of candidate concentrators. A closed Brayton cycle engine simulator conditioned a helium xenon gas mixture to specific interface conditions to simulate various operational modes of the solar dynamic power module. Inlet gas temperature, pressure, and flow rate were independently varied. A total of 58 simulated orbital cycles were completed during the test conduct period. The test hardware, execution of testing, test data, and post test inspections are described.

Modeling N Cycling during Succession after Forest Disturbance: an Analysis of N Mining and Retention Hypothesis

NASA Astrophysics Data System (ADS)

Zhou, Z.; Ollinger, S. V.; Ouimette, A.; Lovett, G. M.; Fuss, C. B.; Goodale, C. L.

2017-12-01

Dissolved inorganic nitrogen losses at the Hubbard Brook Experimental Forest (HBEF), New Hampshire, USA, have declined in recent decades, a pattern that counters expectations based on prevailing theory. An unbalanced ecosystem nitrogen (N) budget implies there is a missing component for N sink. Hypotheses to explain this discrepancy include increasing rates of denitrification and accumulation of N in mineral soil pools following N mining by plants. Here, we conducted a modeling analysis fused with field measurements of N cycling, specifically examining the hypothesis relevant to N mining and retention in mineral soils. We included simplified representations of both mechanisms, N mining and retention, in a revised ecosystem process model, PnET-SOM, to evaluate the dynamics of N cycling during succession after forest disturbance at the HBEF. The predicted N mining during the early succession was regulated by a metric representing a potential demand of extra soil N for large wood growth. The accumulation of nitrate in mineral soil pools was a function of the net aboveground biomass accumulation and soil N availability and parameterized based on field 15N tracer incubation data. The predicted patterns of forest N dynamics were consistent with observations. The addition of the new algorithms also improved the predicted DIN export in stream water with an R squared of 0.35 (P<0.01) aganist observations. Predicted mining processes had an average rate of 7.4 kgNha-1yr-1 and Predicted rates of N retention processes were 5.2 kgNha-1yr-1, both of which were in line with estimates only based on field data. The predicted trend of low DIN export could continue for another 70 years to pay back the mined N in mineral soils. Predicted ecosystem N balance showed that N gas loss could account for 14-46% of the total N deposition, the soil mining about 103% during the early succession, and soil retention about 35% at the current forest stage at the HBEF.

Tidal pumping drives nutrient and dissolved organic matter dynamics in a Gulf of Mexico subterranean estuary

NASA Astrophysics Data System (ADS)

Santos, Isaac R.; Burnett, William C.; Dittmar, Thorsten; Suryaputra, I. G. N. A.; Chanton, Jeffrey

2009-03-01

We hypothesize that nutrient cycling in a Gulf of Mexico subterranean estuary (STE) is fueled by oxygen and labile organic matter supplied by tidal pumping of seawater into the coastal aquifer. We estimate nutrient production rates using the standard estuarine model and a non-steady-state box model, separate nutrient fluxes associated with fresh and saline submarine groundwater discharge (SGD), and estimate offshore fluxes from radium isotope distributions. The results indicate a large variability in nutrient concentrations over tidal and seasonal time scales. At high tide, nutrient concentrations in shallow beach groundwater were low as a result of dilution caused by seawater recirculation. During ebb tide, the concentrations increased until they reached a maximum just before the next high tide. The dominant form of nitrogen was dissolved organic nitrogen (DON) in freshwater, nitrate in brackish waters, and ammonium in saline waters. Dissolved organic carbon (DOC) production was two-fold higher in the summer than in the winter, while nitrate and DON production were one order of magnitude higher. Oxic remineralization and denitrification most likely explain these patterns. Even though fresh SGD accounted for only ˜5% of total volumetric additions, it was an important pathway of nutrients as a result of biogeochemical inputs in the mixing zone. Fresh SGD transported ˜25% of DOC and ˜50% of total dissolved nitrogen inputs into the coastal ocean, with the remainder associated with a one-dimensional vertical seawater exchange process. While SGD volumetric inputs are similar seasonally, changes in the biogeochemical conditions of this coastal plain STE led to higher summertime SGD nutrient fluxes (40% higher for DOC and 60% higher for nitrogen in the summer compared to the winter). We suggest that coastal primary production and nutrient dynamics in the STE are linked.

The nitrogen isotopic composition in soils and plants: Its use in environmental studies (A Review)

NASA Astrophysics Data System (ADS)

Makarov, M. I.

2009-12-01

The results of studying the isotopic composition of the nitrogen in soils and plants and its use for characterizing the nitrogen cycle in ecosystems, the transformation of nitrogen compounds in soils, the sources of nitrogen nutrition for plants, and the assessment of the symbiotic nitrogen fixation’s contribution to the nitrogen budget of ecosystems were considered for a wide variety of natural and agricultural ecosystems.

Carbon-nitrogen-water interactions: is model parsimony fruitful?

NASA Astrophysics Data System (ADS)

Puertes, Cristina; González-Sanchis, María; Lidón, Antonio; Bautista, Inmaculada; Lull, Cristina; Francés, Félix

2017-04-01

It is well known that carbon and nitrogen cycles are highly intertwined and both should be explained through the water balance. In fact, in water-controlled ecosystems nutrient deficit is related to this water scarcity. For this reason, the present study compares the capability of three models in reproducing the interaction between the carbon and nitrogen cycles and the water cycle. The models are BIOME-BGCMuSo, LEACHM and a simple carbon-nitrogen model coupled to the hydrological model TETIS. Biome-BGCMuSo and LEACHM are two widely used models that reproduce the carbon and nitrogen cycles adequately. However, their main limitation is that these models are quite complex and can be too detailed for watershed studies. On the contrary, the TETIS nutrient sub-model is a conceptual model with a vertical tank distribution over the active soil depth, dividing it in two layers. Only the input of the added litter and the losses due to soil respiration, denitrification, leaching and plant uptake are considered as external fluxes. Other fluxes have been neglected. The three models have been implemented in an experimental plot of a semi-arid catchment (La Hunde, East of Spain), mostly covered by holm oak (Quercus ilex). Plant transpiration, soil moisture and runoff have been monitored daily during nearly two years (26/10/2012 to 30/09/2014). For the same period, soil samples were collected every two months and taken to the lab in order to obtain the concentrations of dissolved organic carbon, microbial biomass carbon, ammonium and nitrate. In addition, between field trips soil samples were placed in PVC tubes with resin traps and were left incubating (in situ buried cores). Thus, mineralization and nitrification accumulated fluxes for two months, were obtained. The ammonium and nitrate leaching accumulated for two months were measured using ion-exchange resin cores. Soil respiration was also measured every field trip. Finally, water samples deriving from runoff, were collected to obtain the concentrations of dissolved organic carbon, dissolved organic nitrogen, ammonium and nitrate. The comparison shows a better performance of the complex models reproducing carbon and nitrogen cycles. However, the TETIS nutrient sub-model, even simpler than BIOME-BGCMuSo and LEACHM, reproduces the water balance adequately and it obtains a suitable representation of the carbon and nitrogen cycles.

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

PubMed

Hubalek, Valerie; Wu, Xiaofen; Eiler, Alexander; Buck, Moritz; Heim, Christine; Dopson, Mark; Bertilsson, Stefan; Ionescu, Danny

2016-10-01

Little research has been conducted on microbial diversity deep under the Earth's surface. In this study, the microbial communities of three deep terrestrial subsurface aquifers were investigated. Temporal community data over 6 years revealed that the phylogenetic structure and community dynamics were highly dependent on the degree of isolation from the earth surface biomes. The microbial community at the shallow site was the most dynamic and was dominated by the sulfur-oxidizing genera Sulfurovum or Sulfurimonas at all-time points. The microbial community in the meteoric water filled intermediate aquifer (water turnover approximately every 5 years) was less variable and was dominated by candidate phylum OD1. Metagenomic analysis of this water demonstrated the occurrence of key genes for nitrogen and carbon fixation, sulfate reduction, sulfide oxidation and fermentation. The deepest water mass (5000 year old waters) had the lowest taxon richness and surprisingly contained Cyanobacteria. The high relative abundance of phylogenetic groups associated with nitrogen and sulfur cycling, as well as fermentation implied that these processes were important in these systems. We conclude that the microbial community patterns appear to be shaped by the availability of energy and nutrient sources via connectivity to the surface or from deep geological processes.

Soil nitrogen dynamics in a river floodplain mosaic.

PubMed

Shrestha, J; Niklaus, P A; Frossard, E; Samaritani, E; Huber, B; Barnard, R L; Schleppi, P; Tockner, K; Luster, J

2012-01-01

In their natural state, river floodplains are heterogeneous and dynamic ecosystems that may retain and remove large quantities of nitrogen from surface waters. We compared the soil nitrogen dynamics in different types of habitat patches in a restored and a channelized section of a Thur River floodplain (northeast Switzerland). Our objective was to relate the spatiotemporal variability of selected nitrogen pools (ammonium, nitrate, microbial nitrogen), nitrogen transformations (mineralization, nitrification, denitrification), and gaseous nitrogen emission (NO) to soil properties and hydrological processes. Our study showed that soil water content and carbon availability, which depend on sedimentation and inundation dynamics, were the key factors controlling nitrogen pools and processes. High nitrogen turnover rates were measured on gravel bars, characterized by both frequent inundation and high sediment deposition rates, as well as in low-lying alluvial forest patches with a fine-textured, nutrient-rich soil where anaerobic microsites probably facilitated coupled nitrification-denitrification. In contrast, soils of the embankment in the channelized section had comparatively small inorganic nitrogen pools and low transformation rates, particularly those related to nitrate production. Environmental heterogeneity, characteristic of the restored section, favors nitrogen removal by creating sites of high sedimentation and denitrification. Of concern, however, are the locally high NO efflux and the possibility that nitrate could leach from nitrification hotspots. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

In situ self-sacrificed template synthesis of vanadium nitride/nitrogen-doped graphene nanocomposites for electrochemical capacitors.

PubMed

Liu, Hong-Hui; Zhang, Hong-Ling; Xu, Hong-Bin; Lou, Tai-Ping; Sui, Zhi-Tong; Zhang, Yi

2018-03-15

Vanadium nitride and graphene have been widely used as pseudo-capacitive and electric double-layer capacitor electrode materials for electrochemical capacitors, respectively. However, the poor cycling stability of vanadium nitride and the low capacitance of graphene impeded their practical applications. Herein, we demonstrated an in situ self-sacrificed template method for the synthesis of vanadium nitride/nitrogen-doped graphene (VN/NGr) nanocomposites by the pyrolysis of a mixture of dicyandiamide, glucose, and NH 4 VO 3 . Vanadium nitride nanoparticles of the size in the range of 2 to 7 nm were uniformly embedded into the nitrogen-doped graphene skeleton. Furthermore, the VN/NGr nanocomposites with a high specific surface area and pore volume showed a high specific capacitance of 255 F g -1 at 10 mV s -1 , and an excellent cycling stability (94% capacitance retention after 2000 cycles). The excellent capacitive properties were ascribed to the excellent conductivity of nitrogen-doped graphene, high surface area, high pore volume, and the synergistic effect between vanadium nitride and nitrogen-doped graphene.

Mechanism and design of intermittent aeration activated sludge process for nitrogen removal.

PubMed

Hanhan, Oytun; Insel, Güçlü; Yagci, Nevin Ozgur; Artan, Nazik; Orhon, Derin

2011-01-01

The paper provided a comprehensive evaluation of the mechanism and design of intermittent aeration activated sludge process for nitrogen removal. Based on the specific character of the process the total cycle time, (T(C)), the aerated fraction, (AF), and the cycle time ratio, (CTR) were defined as major design parameters, aside from the sludge age of the system. Their impact on system performance was evaluated by means of process simulation. A rational design procedure was developed on the basis of basic stochiometry and mass balance related to the oxidation and removal of nitrogen under aerobic and anoxic conditions, which enabled selected of operation parameters of optimum performance. The simulation results indicated that the total nitrogen level could be reduced to a minimum level by appropriate manipulation of the aerated fraction and cycle time ratio. They also showed that the effluent total nitrogen could be lowered to around 4.0 mgN/L by adjusting the dissolved oxygen set-point to 0.5 mg/L, a level which promotes simultaneous nitrification and denitrification.

Carbon, nitrogen and phosphorus dynamics in nine sub-systems of the Sylt-Rømø Bight ecosystem, German Wadden Sea

NASA Astrophysics Data System (ADS)

Baird, Dan; Asmus, Harald; Asmus, Ragnhild

2011-01-01

Flow networks of nine sub-systems consisting of 59 components each of the Sylt-Rømø Bight, German Wadden Sea, were constructed depicting the standing stocks and flows of material and energy within and between the sub-systems. Carbon, nitrogen and phosphorous were used as currencies for each sub-system, thus resulting in 27 network models, which were analyzed by ecological network analytical protocols. Results show substantial variability in the dynamics of these elements within and between the nine sub-systems, which differ in habitat structure, species diversity and in the standing stocks of their constituent living and non-living components. The relationship between the biodiversity and selected information indices and ratios, derived from ecological network analysis, of individual sub-systems is variable and differ substantially between them. Ecosystem properties such as the structure and magnitude of the recycling of these elements, number of cycles, and total sub-system activity were calculated and discussed, highlighting the differences between and complexity of the flow of C, N and P in a coastal marine ecosystem. The average number of cycles increase from 179 for C, to 16,923 and 20,580 for N and P respectively, while the average amount of recycled material, as measured by the Finn Cycling Index (FCI), increase from 17% for C, to 52% for P and to 61% for N. The number of cycles and the FCI vary considerably between the sub-systems for the different elements. The largest number of cycles of all three elements was observed in the muddy sand flat sub-system, but the highest FCIs were computed for both C (32%) and N (85%) in the Arenicola Flats, and in sparse Zostera noltii sea grass beds for P (67%). Indices reflecting on the growth, organization and resilience of the sub-systems also showed considerable variability between and within the inter-tidal ecosystems in the Bight. Indices such as, for example, the relative ascendency ratios increase on average from C to N to P, whereas others, such as the Average Mutual Information and Flow Diversity indices, were found to be higher in the N models than in the C or P ones.

Cost-Effectiveness of Nitrogen Mitigation by Alternative Household Wastewater Management Technologies

EPA Science Inventory

Household wastewater, especially from conventional septic systems, is a major contributor to nitrogen pollution. Alternative household wastewater management technologies provide similar sewerage management services but their life cycle costs and nitrogen flow implications remain ...

Carbon cycle: Nitrogen's carbon bonus

NASA Astrophysics Data System (ADS)

Janssens, Ivan A.; Luyssaert, Sebastiaan

2009-05-01

Atmospheric deposition of nitrogen can, but does not always, speed up the sequestration of carbon in trees and forest soil. This complexity may arise from the spatial variations in each of the three mechanisms by which nitrogen affects carbon storage.

Key ecological responses to nitrogen are altered by climate ...

EPA Pesticide Factsheets

Here we review the effects of nitrogen and climate (e.g. temperature and precipitation) on four aspects of ecosystem structure and function including hydrologic-coupled nitrogen cycling, carbon cycling, acidification and biodiversity. Ecosystems are simultaneously exposed to multiple stressors; two dominant drivers threatening ecosystems are anthropogenic nitrogen loading and climate change. Evaluating the cumulative effects of these stressors provides a holistic view of ecosystem vulnerability, which would better inform policy decisions aimed to protect the sustainability of ecosystems. Our current knowledge of the cumulative effects of these stressors is growing, but limited. The goal of this paper is to synthesize the state of scientific knowledge on how ecosystems are affected by the interactions of meteorlogic/climatic factors (e.g., temperature and precipitation) and nitrogen addition. Understanding the interactions of meteorlogic/climatic factors and nitrogen will help to inform how current and projected variability may affect ecosystem response.

Global terrestrial N2O budget for present and future

NASA Astrophysics Data System (ADS)

Olin, Stefan; Xing, Xu-Ri; Wårlind, David; Eliasson, Peter; Smith, Ben; Arneth, Almut

2017-04-01

Nitrogen (N) plays an important role in plant productivity and physiology and is the main limiting nutrient in a majority of the terrestrial ecosystems. The enhanced input of anthropogenic reactive nitrogen (Nr) in agriculture have enhanced global food production, but with adverse effects on biodiversity and water quality, and substantially increased emissions of N trace gases that affect air quality and climate. Emissions of N gases affects the climate, either through cloud forming nitrogen oxides (NOx) gases or as greenhouse gases, where nitrous oxide (N2O) is the most important being approximately 300 times more potent than carbon dioxide (CO2). In this study we use the process-based global vegetation model Lund-Potsdam-Jena General Ecosystem Simulator (LPJ-GUESS) (Olin et al. 2015) that recently have incorporated a new soil N transformation scheme, adopted from Xu-Ri and Prentice (2008), which makes it possible to study the N2O emission respond to changes in climate and CO2 concentration as well as anthropogenic N enhancements on a global scale. We present here results from the validation of the new model against site-scale N2O measurements from agricultural and non-agricultural ecosystems. We will also present results from a study to examine how land use, land use change and anthropogenic N fertilisation influence historical and future global N2O emissions. This new development represents a key component within future projects in CMIP6 (LUMIP) and in EC-Earth for the EU Horizon 2020 project CRESCENDO. Olin, S., Lindeskog, M., Pugh, T., Schurgers, G., Mischurow, M., Wårlind, D., Zaehle, S., Stocker, B., Smith, B. and Arneth, A. 2015. Soil carbon management in large-scale Earth system modelling: implications for crop yields and nitrogen leaching. Earth System Dynamics, 6, 745-768. Xu-Ri and Prentice IC. 2008. Terrestrial nitrogen cycle simulation with a dynamic global vegetation model. Global Change Biology, 14, 1745-1764.

Interactions between nitrogen deposition, land cover conversion, and climate change determine the contemporary carbon balance of Europe

NASA Astrophysics Data System (ADS)

Churkina, G.; Zaehle, S.; Hughes, J.; Viovy, N.; Chen, Y.; Jung, M.; Heumann, B. W.; Ramankutty, N.; Rödenbeck, C.; Heimann, M.; Jones, C.

2010-03-01

European ecosystems are thought to uptake significant amounts of carbon, but neither the rate nor the contributions of the underlying processes are well known. In the second half of the 20th century, carbon dioxide concentrations have risen by more than 100 ppm, atmospheric nitrogen deposition has more than doubled, and European mean temperatures were increasing by 0.02 °C per year. The extents of forest and grasslands have increase with the respective rates of 5800 km2 yr-1 and 1100 km2 yr-1 as agricultural land has been abandoned at a rate of 7000 km2 yr-1. In this study, we analyze the responses of European land ecosystems to the aforementioned environmental changes using results from four process-based ecosystem models: BIOME-BGC, JULES, ORCHIDEE, and O-CN. All four models suggest that European terrestrial ecosystems sequester carbon at a rate of 100 TgC yr-1 (1980-2007 mean) with strong interannual variability (± 85 TgC yr-1) and a substantial inter-model uncertainty (± 45 TgC yr-1). Decadal budgets suggest that there has been a slight increase in terrestrial net carbon storage from 85 TgC yr-1 in 1980-1989 to 114 TgC yr-1 in 2000-2007. The physiological effect of rising CO2 in combination with nitrogen deposition and forest re-growth have been identified as the important explanatory factors for this net carbon storage. Changes in the growth of woody vegetation are an important contributor to the European carbon sink. Simulated ecosystem responses were more consistent for the two models accounting for terrestrial carbon-nitrogen dynamics than for the two models which only accounted for carbon cycling and the effects of land cover change. Studies of the interactions of carbon-nitrogen dynamics with land use changes are needed to further improve the quantitative understanding of the driving forces of the European land carbon balance.

N cycling in SPRUCE (Spruce Peatlands Response Under ...

EPA Pesticide Factsheets

Peatlands located in boreal regions make up a third of global wetland area and are expected to have the highest temperature increases in response to climate change. As climate warms, we expect peat decomposition may accelerate, altering the cycling of nitrogen. Alterations in the nitrogen cycle can have consequences on NO3, NH4 availability or pollution, and potentially increase nitrous oxide (N2O) emissions, a persistent greenhouse gas (GHG). These consequences can cascade to altering whole ecosystem functions and effecting human health.We are investigating nitrogen cycling response to elevated temperature and CO2 in a boreal peatland. Spruce and Peatland Responses Under Climate and Environmental Change (SPRUCE) project initiated soil warming in 2014 in ten peatland mesocosms (five temperature treatments from ambient (+0°C) to +9°C) and elevated CO2 in half of the mesocosms in 2016. Peat cores at three depths (acrotelm, catotelm, deep peat) were analyzed in the laboratory for denitrification, nitrification, and ammonification. We expect denitrification, nitrification, and ammonification rates to increase, and denitrification efficiency to decrease with rising temperatures- potentially contaminating water resources with NO3, NH4 and increase N2O concentrations in our atmosphere. This research will enhance the scientific understanding of how nitrogen cycling, an important functional eco-service, responds under environmental conditions including elevated CO2

Integrating Environmental Genomics and Biogeochemical Models: a Gene-centric Approach

NASA Astrophysics Data System (ADS)

Reed, D. C.; Algar, C. K.; Huber, J. A.; Dick, G.

2013-12-01

Rapid advances in molecular microbial ecology have yielded an unprecedented amount of data about the evolutionary relationships and functional traits of microbial communities that regulate global geochemical cycles. Biogeochemical models, however, are trailing in the wake of the environmental genomics revolution and such models rarely incorporate explicit representations of bacteria and archaea, nor are they compatible with nucleic acid or protein sequence data. Here, we present a functional gene-based framework for describing microbial communities in biogeochemical models that uses genomics data and provides predictions that are readily testable using cutting-edge molecular tools. To demonstrate the approach in practice, nitrogen cycling in the Arabian Sea oxygen minimum zone (OMZ) was modelled to examine key questions about cryptic sulphur cycling and dinitrogen production pathways in OMZs. By directly linking geochemical dynamics to the genetic composition of microbial communities, the method provides mechanistic insights into patterns and biogeochemical consequences of marine microbes. Such an approach is critical for informing our understanding of the key role microbes play in modulating Earth's biogeochemistry.

Nitrogen cycling in a forest stream determined by a 15N tracer addition

Treesearch

Patrick J. Mullholland; Jennifer L. Tank; Diane M. Sanzone; Wilfred M. Wollheim; Bruce J. Peterson; Jackson R. Webster; Judy L. Meyer

2000-01-01

Nitrogen uptake and cycling was examined using a six-week tracer addition of 15N-labeled ammonium in early spring in Waer Branch, a first-order deciduous forest stream in eastern Tennessee. Prior to the 15N addition, standing stocks of N were determined for the major biomass compartments. During and after the addition,

Ecosystem services altered by human changes in the nitrogen cycle: a new perspective for US decision making Ecology Letters

EPA Science Inventory

The human alteration of the nitrogen (N) cycle has yielded many benefits, but also has altered ecosystems and degraded air and water quality in many areas. Here we explore the science available to connect the effects of increasing N on ecosystem structure and function to ecosyst...

Rice Ferredoxin-Dependent Glutamate Synthase Regulates Nitrogen-Carbon Metabolomes and Is Genetically Differentiated between japonica and indica Subspecies.

PubMed

Yang, Xiaolu; Nian, Jinqiang; Xie, Qingjun; Feng, Jian; Zhang, Fengxia; Jing, Hongwei; Zhang, Jian; Dong, Guojun; Liang, Yan; Peng, Juli; Wang, Guodong; Qian, Qian; Zuo, Jianru

2016-11-07

Plants assimilate inorganic nitrogen absorbed from soil into organic forms as Gln and Glu through the glutamine synthetase/glutamine:2-oxoglutarate amidotransferase (GS/GOGAT) cycle. Whereas GS catalyzes the formation of Gln from Glu and ammonia, GOGAT catalyzes the transfer of an amide group from Gln to 2-oxoglutarate to produce two molecules of Glu. However, the regulatory role of the GS/GOGAT cycle in the carbon-nitrogen balance is not well understood. Here, we report the functional characterization of rice ABNORMAL CYTOKININ RESPONSE 1 (ABC1) gene that encodes a ferredoxin-dependent (Fd)-GOGAT. The weak mutant allele abc1-1 mutant shows a typical nitrogen-deficient syndrome, whereas the T-DNA insertional mutant abc1-2 is seedling lethal. Metabolomics analysis revealed the accumulation of an excessive amount of amino acids with high N/C ratio (Gln and Asn) and several intermediates in the tricarboxylic acid cycle in abc1-1, suggesting that ABC1 plays a critical role in nitrogen assimilation and carbon-nitrogen balance. Five non-synonymous single-nucleotide polymorphisms were identified in the ABC1 coding region and characterized as three distinct haplotypes, which have been highly and specifically differentiated between japonica and indica subspecies. Collectively, these results suggest that ABC1/OsFd-GOGAT is essential for plant growth and development by modulating nitrogen assimilation and the carbon-nitrogen balance. Copyright © 2016 The Author. Published by Elsevier Inc. All rights reserved.

Excess nitrogen in the U.S. environment: Trends, risks, and solutions

USGS Publications Warehouse

Davidson, E.A.; David, M.B.; Galloway, J.N.; Goodale, C.L.; Haeuber, R.; Harrison, J.A.; Howarth, R.W.; Jaynes, D.B.; Lowrance, R.R.; Thomas, Nolan B.; Peel, J.L.; Pinder, R.W.; Porter, E.; Snyder, C.S.; Townsend, A.R.; Ward, M.H.

2011-01-01

It is not surprising that humans have profoundly altered the global nitrogen (N) cycle in an effort to feed 7 billion people, because nitrogen is an essential plant and animal nutrient. Food and energy production from agriculture, combined with industrial and energy sources, have more than doubled the amount of reactive nitrogen circulating annually on land. Humanity has disrupted the nitrogen cycle even more than the carbon (C) cycle. We present new research results showing widespread effects on ecosystems, biodiversity, human health, and climate, suggesting that in spite of decades of research quantifying the negative consequences of too much available nitrogen in the biosphere, solutions remain elusive. There have been important successes in reducing nitrogen emissions to the atmosphere and this has improved air quality. Effective solutions for reducing nitrogen losses from agriculture have also been identified, although political and economic impediments to their adoption remain. Here, we focus on the major sources of reactive nitrogen for the United States (U.S.), their impacts, and potential mitigation options. Sources: ??? Intensive development of agriculture, industry, and transportation has profoundly altered the U.S. nitrogen cycle. ??? Nitrogen emissions from the energy and transportation sectors are declining, but agricultural emissions are increasing. ??? Approximately half of all nitrogen applied to boost agricultural production escapes its intended use and is lost to the environment. Impacts: ??? Two-thirds of U.S. coastal systems are moderately to severely impaired due to nutrient loading; there are now approximately 300 hypoxic (low oxygen) zones along the U.S. coastline and the number is growing. One third of U.S. streams and two fifths of U.S. lakes are impaired by high nitrogen concentrations. ??? Air pollution continues to reduce biodiversity. A nation-wide assessment has documented losses of nitrogen-sensitive native species in favor of exotic, invasive species. ??? More than 1.5 million Americans drink well water contaminated with too much (or close to too much) nitrate (a regulated drinking water pollutant), potentially placing them at increased risk of birth defects and cancer. More research is needed to deepen understanding of these health risks. ??? Several pathogenic infections, including coral diseases, bird die-offs, fish diseases, and human diarrheal diseases and vector-borne infections are associated with nutrient losses from agriculture and from sewage entering ecosystems. ??? Nitrogen is intimately linked with the carbon cycle and has both warming and cooling effects on the climate. Mitigation Options: ??? Regulation of nitrogen oxide (NOX) emissions from energy and transportation sectors has greatly improved air quality, especially in the eastern U.S. Nitrogen oxide is expected to decline further as stronger regulations take effect, but ammonia remains mostly unregulated and is expected to increase unless better controls on ammonia emissions from livestock operations are implemented. ??? Nitrogen loss from farm and livestock operations can be reduced 30-50% using current practices and technologies and up to 70-90% with innovative applications of existing methods. Current U.S. agricultural policies and support systems, as well as declining investments in agricultural extension, impede the adoption of these practices. Society faces profound challenges to meet demands for food, fiber, and fuel while minimizing unintended environmental and human health impacts. While our ability to quantify transfers of nitrogen across land, water, and air has improved since the first publication of this series in 1997, an even bigger challenge remains: using the science for effective management policies that reduce climate change, improve water quality, and protect human and environmental health. ?? The Ecological Society of America.

Fate and Transport of Nitrogen and Carbon with Decomposition of Organic Matter in a Reduced Paddy Field Based on a Coupled Nitrogen-Carbon Cycling Model Using the HP1 Code

NASA Astrophysics Data System (ADS)

Toride, N.; Matsuoka, K.

2017-12-01

In order to predict the fate and transport of nitrogen in a reduced paddy field as a result of decomposition of organic matter, we implemented within the PHREEQC program a modified coupled carbon and nitrogen cycling model based on the LEACHM code. SOM decay processes from organic carbon (Org-C) to biomass carbon (Bio-C), humus carbon (Hum-C), and carbon dioxide (CO2) were described using first-order kinetics. Bio-C was recycled into the organic pool. When oxygen was available in an aerobic condition, O2 was used to produce CO2 as an electron accepter. When O2 availability is low, other electron acceptors such as NO3-, Mn4+, Fe3+, SO42-, were used depending on the redox potential. Decomposition of Org-N was related to the carbon cycle using the C/N ratio. Mineralization and immobilization were determined based on available NH4-N and the nitrogen demand for the formation of biomass and humus. Although nitrification was independently described with the first-order decay process, denitrification was linked with the SOM decay since NO3- was an electron accepter for the CO2 production. Proton reactions were coupled with the nitrification from NH4+ to NO3-, and the ammonium generation from NH3 to NH4+. Furthermore, cation and anion exchange reactions were included with the permanent negative charges and the pH dependent variable charges. The carbon and nitrogen cycling model described with PHREEQC was linked with HYDRUS-1D using the HP1 code. Various nitrogen and carbon transport scenarios were demonstrated for the application of organic matter to a saturated paddy soil.

Experimental and mathematical modeling of the consumer’s influence on productivity of algae in a model aquatic ecosystem

NASA Astrophysics Data System (ADS)

Pisman, T. I.; Galayda, Ya. V.; Shirobokova, I. M.

A "producer-consumer" ( Chlorella vulgaris- Paramecium caudatum) closed aquatic system has been investigated experimentally and theoretically. It has been found that there is a direct relationship between the growth of the paramecia population and their release of ammonia nitrogen, which is the best form of nitrogen for Chlorella growth. The theoretical study of a model of a "producer-consumer" aquatic biotic cycle with spatially separated compartments has confirmed the contribution of paramecia to nitrogen cycling. It has been shown that an increase in the concentration of nitrogen released as metabolites of paramecia is accompanied by an increase in the productivity of microalgae.

Development and Implementation of an inquiry lesson for grades 6-12 explicitly teaching the Nature and Process of Science, from ship to shore, for core data of the Cretaceous-Paleogene (K-Pg)

NASA Astrophysics Data System (ADS)

Cohen, E.; Quan, T. M.

2012-12-01

The mass extinction event at the Cretaceous-Paleogene (K-Pg) boundary was the result of a bolide impact, and is popularly known for the extinction of the dinosaurs, but is also one of the largest Paleogene mass extinctions identified. In addition, it was followed by a period of drastic changes in ecological conditions, including a complete alteration of the global carbon cycle; the root cause of this change is still debated. Little information is known regarding changes in the nitrogen cycle during these periods of mass extinction and recovery. Given the importance of the nitrogen cycle to primary production and its relationship to the redox state of the local environment, determining changes in the nitrogen cycle will provide important information as to the processes of global mass extinction and the subsequent recovery. Three lessons for students' grade 6-12 were created to support the content surrounding: National Science Education Content Standards: Standard A: Science as Inquiry Standard D: Earth and Space Science Ocean Literacy Essential Principles: 3. The ocean is a major influence on weather and climate 7. The ocean is largely unexplored In the Nature of Science activity, students sequence a series of photographs to illustrate the scientific process of one scientist, Dr. Tracy Quan, of Oklahoma State University as she uses deep sea core data obtained by the JOIDES Resolution research vessel to investigate the climate during the mass extinction that took place ~ 65 million years ago. By reading the information contained on each card and studying the pictures, students learn that science is a dynamic, non-linear, and creative process. Students do not have to create the exact order Dr. Quan uses as her scientific process, but they need to justify their reasoning for placing the pictures in the order they did. The activity begins with a photo of the JOIDES Resolution and ends during a presentation at a scientific conference. There are 21 other photo cards showing the conduction of the science on the ship and shore.

The pitcher plant Sarracenia purpurea can directly acquire organic nitrogen and short-circuit the inorganic nitrogen cycle.

PubMed

Karagatzides, Jim D; Butler, Jessica L; Ellison, Aaron M

2009-07-07

Despite the large stocks of organic nitrogen in soil, nitrogen availability limits plant growth in many terrestrial ecosystems because most plants take up only inorganic nitrogen, not organic nitrogen. Although some vascular plants can assimilate organic nitrogen directly, only recently has organic nitrogen been found to contribute significantly to the nutrient budget of any plant. Carnivorous plants grow in extremely nutrient-poor environments and carnivory has evolved in these plants as an alternative pathway for obtaining nutrients. We tested if the carnivorous pitcher plant Sarracenia purpurea could directly take up intact amino acids in the field and compared uptake of organic and inorganic forms of nitrogen across a gradient of nitrogen deposition. We hypothesized that the contribution of organic nitrogen to the nitrogen budget of the pitcher plant would decline with increasing nitrogen deposition. At sites in Canada (low nitrogen deposition) and the United States (high nitrogen deposition), individual pitchers were fed two amino acids, glycine and phenylalanine, and inorganic nitrogen (as ammonium nitrate), individually and in mixture. Plants took up intact amino acids. Acquisition of each form of nitrogen provided in isolation exceeded uptake of the same form in mixture. At the high deposition site, uptake of organic nitrogen was higher than uptake of inorganic nitrogen. At the low deposition site, uptake of all three forms of nitrogen was similar. Completeness of the associated detritus-based food web that inhabits pitcher-plant leaves and breaks down captured prey had no effect on nitrogen uptake. By taking up intact amino acids, Sarracenia purpurea can short-circuit the inorganic nitrogen cycle, thus minimizing potential bottlenecks in nitrogen availability that result from the plant's reliance for nitrogen mineralization on a seasonally reconstructed food web operating on infrequent and irregular prey capture.

THE FATE AND RETENTION OF ORGANIC AND INORGANIC 15N-NITROGEN IN AN OLD-GROWTH FOREST SOIL IN WESTERN OREGON

EPA Science Inventory

Forests in the Pacific northwestern region of North America receive very little nitrogen through atmospheric deposition and thus can provide insights into how the nitrogen cycle functioned before heavy atmospheric deposition of inorganic nitrogen began in other regions. Our obje...

Effects of Bromus tectorum invasion on microbial carbon and nitrogen cycling in two adjacent undisturbed arid grassland communities

USGS Publications Warehouse

Schaeffer, Sean M.; Ziegler, Susan E.; Belnap, Jayne; Evans, R.D.

2012-01-01

Soil nitrogen (N) is an important component in maintaining ecosystem stability, and the introduction of non-native plants can alter N cycling by changing litter quality and quantity, nutrient uptake patterns, and soil food webs. Our goal was to determine the effects of Bromus tectorum (C3) invasion on soil microbial N cycling in adjacent non-invaded and invaded C3 and C4 native arid grasslands. We monitored resin-extractable N, plant and soil δ13C and δ15N, gross rates of inorganic N mineralization and consumption, and the quantity and isotopic composition of microbial phospholipid biomarkers. In invaded C3 communities, labile soil organic N and gross and net rates of soil N transformations increased, indicating an increase in overall microbial N cycling. In invaded C4 communities labile soil N stayed constant, but gross N flux rates increased. The δ13C of phospholipid biomarkers in invaded C4 communities showed that some portion of the soil bacterial population preferentially decomposed invader C3-derived litter over that from the native C4 species. Invasion in C4 grasslands also significantly decreased the proportion of fungal to bacterial phospholipid biomarkers. Different processes are occurring in response to B. tectorum invasion in each of these two native grasslands that: 1) alter the size of soil N pools, and/or 2) the activity of the microbial community. Both processes provide mechanisms for altering long-term N dynamics in these ecosystems and highlight how multiple mechanisms can lead to similar effects on ecosystem function, which may be important for the construction of future biogeochemical process models.

Shifts in nitrogen acquisition strategies enable enhanced terrestrial carbon storage under elevated CO2 in a global model

NASA Astrophysics Data System (ADS)

Sulman, B. N.; Brzostek, E. R.; Menge, D.; Malyshev, S.; Shevliakova, E.

2017-12-01

Earth System Model (ESM) projections of terrestrial carbon (C) uptake are critical to understanding the future of the global C cycle. Current ESMs include intricate representations of photosynthetic C fixation in plants, allowing them to simulate the stimulatory effect of increasing atmospheric CO2 levels on photosynthesis. However, they lack sophisticated representations of plant nutrient acquisition, calling into question their ability to project the future land C sink. We conducted simulations using a new model of terrestrial C and nitrogen (N) cycling within the Geophysical Fluid Dynamics Laboratory (GFDL) global land model LM4 that uses a return on investment framework to simulate global patterns of N acquisition via fixation of N2 from the atmosphere, scavenging of inorganic N from soil solution, and mining of organic N from soil organic matter (SOM). We show that these strategies drive divergent C cycle responses to elevated CO2 at the ecosystem scale, with the scavenging strategy leading to N limitation of plant growth and the mining strategy facilitating stimulation of plant biomass accumulation over decadal time scales. In global simulations, shifts in N acquisition from inorganic N scavenging to organic N mining along with increases in N fixation supported long-term acceleration of C uptake under elevated CO2. Our results indicate that the ability of the land C sink to mitigate atmospheric CO2 levels is tightly coupled to the functional diversity of ecosystems and their capacity to change their N acquisition strategies over time. Incorporation of these mechanisms into ESMs is necessary to improve confidence in model projections of the global C cycle.

Measuring and modeling the temporal dynamics of nitrogen balance in an experimental-scale paddy field

NASA Astrophysics Data System (ADS)

Tseng, C.; Lin, Y.

2013-12-01

Nitrogen balance involves many mechanisms and plays an important role to maintain the function of nature. Fertilizer application in agriculture activity is usually seen as a common and significant nitrogen input to environment. Improper fertilizer application on paddy field can result in great amount of various types of nitrogen losses. Hence, it is essential to understand and quantify the nitrogen dynamics in paddy field for fertilizer management and pollution control. In this study, we develop a model which considers major transformation processes of nitrogen (e.g. volatilization, nitrification, denitrification and plant uptake). In addition, we measured different types of nitrogen in plants, soil and water at plant growth stages in an experimental-scale paddy field in Taiwan. The measurement includes total nitrogen in plants and soil, and ammonium-N (NH4+-N), nitrate-N (NO3--N) and organic nitrogen in water. The measured data were used to calibrate the model parameters and validate the model for nitrogen balance simulation. The results showed that the model can accurately estimate the temporal dynamics of nitrogen balance in paddy field during the whole growth stage. This model might be helpful and useful for future fertilizer management and pollution control in paddy field.

Reduced Snow Cover Increases Wintertime Nitrous Oxide (N 2O) Emissions from an Agricultural Soil in the Upper U.S. Midwest

DOE PAGES

Ruan, Leilei; Robertson, G. Philip

2016-11-21

Throughout most of the northern hemisphere, snow cover decreased in almost every winter month from 1967 to 2012. Because snow is an effective insulator, snow cover loss has likely enhanced soil freezing and the frequency of soil freeze–thaw cycles, which can disrupt soil nitrogen dynamics including the production of nitrous oxide (N 2O). Here, we used replicated automated gas flux chambers deployed in an annual cropping system in the upper Midwest US for three winters (December–March, 2011–2013) to examine the effects of snow removal and additions on N 2O fluxes. Diminished snow cover resulted in increased N2O emissions each year;more » over the entire experiment, cumulative emissions in plots with snow removed were 69% higher than in ambient snow control plots and 95% higher than in plots that received additional snow (P < 0.001). Higher emissions coincided with a greater number of freeze–thaw cycles that broke up soil macroaggregates (250–8000 µm) and significantly increased soil inorganic nitrogen pools. We conclude that winters with less snow cover can be expected to accelerate N 2O fluxes from agricultural soils subject to wintertime freezing.« less

Mortality and community changes drive sudden oak death impacts on litterfall and soil nitrogen cycling.

PubMed

Cobb, Richard C; Eviner, Valerie T; Rizzo, David M

2013-10-01

Few studies have quantified pathogen impacts to ecosystem processes, despite the fact that pathogens cause or contribute to regional-scale tree mortality. We measured litterfall mass, litterfall chemistry, and soil nitrogen (N) cycling associated with multiple hosts along a gradient of mortality caused by Phytophthora ramorum, the cause of sudden oak death. In redwood forests, the epidemiological and ecological characteristics of the major overstory species determine disease patterns and the magnitude and nature of ecosystem change. Bay laurel (Umbellularia californica) has high litterfall N (0.992%), greater soil extractable NO3 -N, and transmits infection without suffering mortality. Tanoak (Notholithocarpus densiflorus) has moderate litterfall N (0.723%) and transmits infection while suffering extensive mortality that leads to higher extractable soil NO3 -N. Redwood (Sequoia sempervirens) has relatively low litterfall N (0.519%), does not suffer mortality or transmit the pathogen, but dominates forest biomass. The strongest impact of pathogen-caused mortality was the potential shift in species composition, which will alter litterfall chemistry, patterns and dynamics of litterfall mass, and increase soil NO3 -N availability. Patterns of P. ramorum spread and consequent mortality are closely associated with bay laurel abundances, suggesting this species will drive both disease emergence and subsequent ecosystem function. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Soil warming opens the nitrogen cycle at the alpine treeline.

PubMed

Dawes, Melissa A; Schleppi, Patrick; Hättenschwiler, Stephan; Rixen, Christian; Hagedorn, Frank

2017-01-01

Climate warming may alter ecosystem nitrogen (N) cycling by accelerating N transformations in the soil, and changes may be especially pronounced in cold regions characterized by N-poor ecosystems. We investigated N dynamics across the plant-soil continuum during 6 years of experimental soil warming (2007-2012; +4 °C) at a Swiss high-elevation treeline site (Stillberg, Davos; 2180 m a.s.l.) featuring Larix decidua and Pinus uncinata. In the soil, we observed considerable increases in the NH4+ pool size in the first years of warming (by >50%), but this effect declined over time. In contrast, dissolved organic nitrogen (DON) concentrations in soil solutions from the organic layer increased under warming, especially in later years (maximum of +45% in 2012), suggesting enhanced DON leaching from the main rooting zone. Throughout the experimental period, foliar N concentrations showed species-specific but small warming effects, whereas δ 15 N values showed a sustained increase in warmed plots that was consistent for all species analysed. The estimated total plant N pool size at the end of the study was greater (+17%) in warmed plots with Pinus but not in those containing Larix, with responses driven by trees. Irrespective of plot tree species identity, warming led to an enhanced N pool size of Vaccinium dwarf shrubs, no change in that of Empetrum hermaphroditum (dwarf shrub) and forbs, and a reduction in that of grasses, nonvascular plants, and fine roots. In combination, higher foliar δ 15 N values and the transient response in soil inorganic N indicate a persistent increase in plant-available N and greater cumulative plant N uptake in warmer soils. Overall, greater N availability and increased DON concentrations suggest an opening of the N cycle with global warming, which might contribute to growth stimulation of some plant species while simultaneously leading to greater N losses from treeline ecosystems and possibly other cold biomes. © 2016 John Wiley & Sons Ltd.

Turbid Bottom Waters and Ammonium-Rich Freshwaters as Nitrification Hotspots in a Large Urban Estuary (San Francisco Bay, CA)

NASA Astrophysics Data System (ADS)

Damashek, J.; Casciotti, K. L.; Francis, C.

2015-12-01

Nitrification is the link between reduced and oxidized forms of inorganic nitrogen, and is therefore a crucial step in the estuarine nitrogen cycle. Ammonia-oxidizing microorganisms catalyze the rate-limiting step of ammonia oxidation to nitrite and thus play key roles in the biogeochemical cycling nutrient-rich estuaries. Yet, few studies have measured nitrification rates in tandem with ammonia oxidizer functional gene (amoA) expression, abundance, and diversity in estuary waters. Here, we present a multi-year data set on the microbial ecology and biogeochemistry of nitrification in the San Francisco Bay-Delta, the largest estuary on the North American west coast, collected throughout all regions of the estuary from 2012 to 2014. Data on microbial community distributions use functional gene-based PCR assays to assess the diversity, abundance, and mRNA expression of ammonia oxidizers, while stable isotope tracer experiments were used to measure nitrification rates. Ammonia-oxidizing archaea (AOA) typically outnumbered ammonia-oxidizing bacteria (AOB) throughout the sampled gradient, though the relative abundance of AOB was often greater in brackish regions. mRNA expression of amoA appeared to largely track DNA abundance, but suggested only a fraction of the ammonia-oxidizing community was typically active. AOA were always numerically dominant in the Sacramento River, where average nitrification rates were highest, suggesting the AOA communities in this river are responsible for a relatively constant nitrification hotspot. Additionally, depth profiles of nitrification rates suggested high biogeochemical activity near the sediment-water interface in samples with abnormally high turbidity, indicating similar but transient nitrification hotspots in bottom waters containing resuspended sediments. This work increases our knowledge of the ecology and dynamics of ammonia oxidizers in the San Francisco Bay-Delta, with time series data allowing for the putative identification of regions of persistent or transiently high nitrogen cycling rates.

Ammonia oxidizer populations vary with nitrogen cycling across a tropical montane mean annual temperature gradient

Treesearch

S. Pierre; I. Hewson; J. P. Sparks; C. M. Litton; C. Giardina; P. M. Groffman; T. J. Fahey

2017-01-01

Functional gene approaches have been used to better understand the roles of microbes in driving forest soil nitrogen (N) cycling rates and bioavailability. Ammonia oxidation is a rate limiting step in nitrification, and is a key area for understanding environmental constraints on N availability in forests. We studied how increasing temperature affects the role of...

Nitrogen deposition and cycling across an elevation and vegetation gradient in southern Appalachian forests

Treesearch

Jennifer D. Knoepp; James M. Vose; Wayne T. Swank

2008-01-01

We studied nitrogen (N) cycling pools and processes across vegetation and elevation gradients in. the southern Appalachian Mountains in SE USA. Measurements included bulk deposition input, watershed export, throughfall fluxes, litterfall, soil N pools and processes, and soil solution N. N deposition increased with elevation and ranged from 9.5 to 12.4 kg ha-...

Effects of forest harvest on stream-water quality and nitrogen cycling in the Caspar Creek watershed

Treesearch

Randy A. Dahlgren

1998-01-01

The effects of forest harvest on stream-water quality and nitrogen cycling were examined for a redwood/Douglas-fir ecosystem in the North Fork, Caspar Creek experimental watershed in northern California. Stream-water samples were collected from treated (e.g., clearcut) and reference (e.g., noncut) watersheds, and from various locations downstream from the treated...

Dominance of organic nitrogen from headwater streams to large rivers across the conterminous United States

USGS Publications Warehouse

Scott, D.; Harvey, J.; Alexander, R.; Schwarz, G.

2007-01-01

The frequency and magnitude of hypoxic areas in coastal waterbodies are increasing across the globe, partially in response to the increase in nitrogen delivery from the landscape (Diaz, 2001; Rabalais et al., 2002). Although studies of annual total nitrogen and nitrate yields have greatly improved understanding of the contaminant sources that contribute to riverine nitrogen loads (Alexander et al., 2000; Caraco and Cole, 1999), the emphasis of these studies on annual timescales and selected nitrogen forms is not sufficient to understand the factors that control the cycling, transport, and fate of reactive nitrogen. Here we use data from 850 river stations to calculate long-term mean-annual and interannual loads of organic, ammonia, and nitrate-nitrite nitrogen suitable for spatial analysis. We find that organic nitrogen is the dominant nitrogen pool within rivers across most of the United States and is significant even in basins with high anthropogenic sources of nitrogen. Downstream organic nitrogen patterns illustrate that organic nitrogen is an abundant fraction of the nitrogen loads in all regions. Although the longitudinal patterns are not consistent across regions, these patterns are suggestive of cycling between ON and NO3- on seasonal timescales influenced by land use, stream morphology, and riparian connectivity with active floodplains. Future regional studies need to incorporate multinitrogen species at intraannual timescales, as well as stream characteristics beyond channel depth, to elucidate the roles of nitrogen sources and in-stream transformations on the fate and reactivity of riverine nitrogen transported to coastal seas.

Dominance of organic nitrogen from headwater streams to large rivers across the conterminous United States

NASA Astrophysics Data System (ADS)

Scott, Durelle; Harvey, Judson; Alexander, Richard; Schwarz, Gregory

2007-03-01

The frequency and magnitude of hypoxic areas in coastal waterbodies are increasing across the globe, partially in response to the increase in nitrogen delivery from the landscape (Diaz, 2001; Rabalais et al., 2002). Although studies of annual total nitrogen and nitrate yields have greatly improved understanding of the contaminant sources that contribute to riverine nitrogen loads (Alexander et al., 2000; Caraco and Cole, 1999), the emphasis of these studies on annual timescales and selected nitrogen forms is not sufficient to understand the factors that control the cycling, transport, and fate of reactive nitrogen. Here we use data from 850 river stations to calculate long-term mean-annual and interannual loads of organic, ammonia, and nitrate-nitrite nitrogen suitable for spatial analysis. We find that organic nitrogen is the dominant nitrogen pool within rivers across most of the United States and is significant even in basins with high anthropogenic sources of nitrogen. Downstream organic nitrogen patterns illustrate that organic nitrogen is an abundant fraction of the nitrogen loads in all regions. Although the longitudinal patterns are not consistent across regions, these patterns are suggestive of cycling between ON and NO3- on seasonal timescales influenced by land use, stream morphology, and riparian connectivity with active floodplains. Future regional studies need to incorporate multinitrogen species at intraannual timescales, as well as stream characteristics beyond channel depth, to elucidate the roles of nitrogen sources and in-stream transformations on the fate and reactivity of riverine nitrogen transported to coastal seas.

Cascading costs: an economic nitrogen cycle.

PubMed

Moomaw, William R; Birch, Melissa B L

2005-09-01

The chemical nitrogen cycle is becoming better characterized in terms of fluxes and reservoirs on a variety of scales. Galloway has demonstrated that reactive nitrogen can cascade through multiple ecosystems causing environmental damage at each stage before being denitrified to N(2). We propose to construct a parallel economic nitrogen cascade (ENC) in which economic impacts of nitrogen fluxes can be estimated by the costs associated with each stage of the chemical cascade. Using economic data for the benefits of damage avoided and costs of mitigation in the Chesapeake Bay basin, we have constructed an economic nitrogen cascade for the region. Since a single ton of nitrogen can cascade through the system, the costs also cascade. Therefore evaluating the benefits of mitigating a ton of reactive nitrogen released needs to consider the damage avoided in all of the ecosystems through which that ton would cascade. The analysis reveals that it is most cost effective to remove a ton of nitrogen coming from combustion since it has the greatest impact on human health and creates cascading damage through the atmospheric, terrestrial, aquatic and coastal ecosystems. We will discuss the implications of this analysis for determining the most cost effective policy option for achieving environmental quality goals.

Cascading costs: an economic nitrogen cycle.

PubMed

Moomaw, William R; Birch, Melissa B L

2005-12-01

The chemical nitrogen cycle is becoming better characterized in terms of fluxes and reservoirs on a variety of scales. Galloway has demonstrated that reactive nitrogen can cascade through multiple ecosystems causing environmental damage at each stage before being denitrified to N2. We propose to construct a parallel economic nitrogen cascade (ENC) in which economic impacts of nitrogen fluxes can be estimated by the costs associated with each stage of the chemical cascade. Using economic data for the benefits of damage avoided and costs of mitigation in the Chesapeake Bay basin, we have constructed an economic nitrogen cascade for the region. Since a single tonne of nitrogen can cascade through the system, the costs also cascade. Therefore evaluating the benefits of mitigating a tonne of reactive nitrogen released needs to consider the damage avoided in all of the ecosystems through which that tonne would cascade. The analysis reveals that it is most cost effective to remove a tonne of nitrogen coming from combustion since it has the greatest impact on human health and creates cascading damage through the atmospheric, terrestrial, aquatic and coastal ecosystems. We will discuss the implications of this analysis for determining the most cost effective policy option for achieving environmental quality goals.

Sagebrush carrying out hydraulic lift enhances surface soil nitrogen cycling and nitrogen uptake into inflorescences.

PubMed

Cardon, Zoe G; Stark, John M; Herron, Patrick M; Rasmussen, Jed A

2013-11-19

Plant roots serve as conduits for water flow not only from soil to leaves but also from wetter to drier soil. This hydraulic redistribution through root systems occurs in soils worldwide and can enhance stomatal opening, transpiration, and plant carbon gain. For decades, upward hydraulic lift (HL) of deep water through roots into dry, litter-rich, surface soil also has been hypothesized to enhance nutrient availability to plants by stimulating microbially controlled nutrient cycling. This link has not been demonstrated in the field. Working in sagebrush-steppe, where water and nitrogen limit plant growth and reproduction and where HL occurs naturally during summer drought, we slightly augmented deep soil water availability to 14 HL+ treatment plants throughout the summer growing season. The HL+ sagebrush lifted greater amounts of water than control plants and had slightly less negative predawn and midday leaf water potentials. Soil respiration was also augmented under HL+ plants. At summer's end, application of a gas-based (15)N isotopic labeling technique revealed increased rates of nitrogen cycling in surface soil layers around HL+ plants and increased uptake of nitrogen into HL+ plants' inflorescences as sagebrush set seed. These treatment effects persisted even though unexpected monsoon rainstorms arrived during assays and increased surface soil moisture around all plants. Simulation models from ecosystem to global scales have just begun to include effects of hydraulic redistribution on water and surface energy fluxes. Results from this field study indicate that plants carrying out HL can also substantially enhance decomposition and nitrogen cycling in surface soils.

Comparison between reverse Brayton and Kapitza based LNG boil-off gas reliquefaction system using exergy analysis

NASA Astrophysics Data System (ADS)

Kochunni, Sarun Kumar; Chowdhury, Kanchan

2017-02-01

LNG boil-off gas (BOG) reliquefaction systems in LNG carrier ships uses refrigeration devices which are based on reverse Brayton, Claude, Kapitza (modified Claude) or Cascade cycles. Some of these refrigeration devices use nitrogen as the refrigerants and hence nitrogen storage vessels or nitrogen generators needs to be installed in LNG carrier ships which consume space and add weight to the carrier. In the present work, a new configuration based on Kapitza liquefaction cycle which uses BOG itself as working fluid is proposed and has been compared with Reverse Brayton Cycle (RBC) on sizes of heat exchangers and compressor operating parameters. Exergy analysis is done after simulating at steady state with Aspen Hysys 8.6® and the comparison between RBC and Kapitza may help designers to choose reliquefaction system with appropriate process parameters and sizes of equipment. With comparable exergetic efficiency as that of an RBC, a Kaptiza system needs only BOG compressor without any need of nitrogen gas.

Coupling of oceanic carbon and nitrogen facilitates spatially resolved quantitative reconstruction of nitrate inventories.

PubMed

Glock, Nicolaas; Erdem, Zeynep; Wallmann, Klaus; Somes, Christopher J; Liebetrau, Volker; Schönfeld, Joachim; Gorb, Stanislav; Eisenhauer, Anton

2018-03-23

Anthropogenic impacts are perturbing the global nitrogen cycle via warming effects and pollutant sources such as chemical fertilizers and burning of fossil fuels. Understanding controls on past nitrogen inventories might improve predictions for future global biogeochemical cycling. Here we show the quantitative reconstruction of deglacial bottom water nitrate concentrations from intermediate depths of the Peruvian upwelling region, using foraminiferal pore density. Deglacial nitrate concentrations correlate strongly with downcore δ 13 C, consistent with modern water column observations in the intermediate Pacific, facilitating the use of δ 13 C records as a paleo-nitrate-proxy at intermediate depths and suggesting that the carbon and nitrogen cycles were closely coupled throughout the last deglaciation in the Peruvian upwelling region. Combining the pore density and intermediate Pacific δ 13 C records shows an elevated nitrate inventory of >10% during the Last Glacial Maximum relative to the Holocene, consistent with a δ 13 C-based and δ 15 N-based 3D ocean biogeochemical model and previous box modeling studies.

Multi-stage combustion using nitrogen-enriched air

DOEpatents

Fischer, Larry E.; Anderson, Brian L.

2004-09-14

Multi-stage combustion technology combined with nitrogen-enriched air technology for controlling the combustion temperature and products to extend the maintenance and lifetime cycles of materials in contact with combustion products and to reduce pollutants while maintaining relatively high combustion and thermal cycle efficiencies. The first stage of combustion operates fuel rich where most of the heat of combustion is released by burning it with nitrogen-enriched air. Part of the energy in the combustion gases is used to perform work or to provide heat. The cooled combustion gases are reheated by additional stages of combustion until the last stage is at or near stoichiometric conditions. Additional energy is extracted from each stage to result in relatively high thermal cycle efficiency. The air is enriched with nitrogen using air separation technologies such as diffusion, permeable membrane, absorption, and cryogenics. The combustion method is applicable to many types of combustion equipment, including: boilers, burners, turbines, internal combustion engines, and many types of fuel including hydrogen and carbon-based fuels including methane and coal.

Potential roles of anaerobic ammonium and methane oxidation in the nitrogen cycle of wetland ecosystems.

PubMed

Zhu, Guibing; Jetten, Mike S M; Kuschk, Peter; Ettwig, Katharina F; Yin, Chengqing

2010-04-01

Anaerobic ammonium oxidation (anammox) and anaerobic methane oxidation (ANME coupled to denitrification) with nitrite as electron acceptor are two of the most recent discoveries in the microbial nitrogen cycle. Currently the anammox process has been relatively well investigated in a number of natural and man-made ecosystems, while ANME coupled to denitrification has only been observed in a limited number of freshwater ecosystems. The ubiquitous presence of anammox bacteria in marine ecosystems has changed our knowledge of the global nitrogen cycle. Up to 50% of N(2) production in marine sediments and oxygen-depleted zones may be attributed to anammox bacteria. However, there are only few indications of anammox in natural and constructed freshwater wetlands. In this paper, the potential role of anammox and denitrifying methanotrophic bacteria in natural and artificial wetlands is discussed in relation to global warming. The focus of the review is to explore and analyze if suitable environmental conditions exist for anammox and denitrifying methanotrophic bacteria in nitrogen-rich freshwater wetlands.

Isotopic inferences of ancient biochemistries - Carbon, sulfur, hydrogen, and nitrogen

NASA Technical Reports Server (NTRS)

Schidlowski, M.; Hayes, J. M.; Kaplan, I. R.

1983-01-01

In processes of biological incorporation and subsequent biochemical processing sizable isotope effects occur as a result of both thermodynamic and kinetic fractionations which take place during metabolic and biosynthetic reactions. In this chapter a review is provided of earlier work and recent studies on isotope fractionations in the biogeochemical cycles of carbon, sulfur, hydrogen, and nitrogen. Attention is given to the biochemistry of carbon isotope fractionation, carbon isotope fractionation in extant plants and microorganisms, isotope fractionation in the terrestrial carbon cycle, the effects of diagenesis and metamorphism on the isotopic composition of sedimentary carbon, the isotopic composition of sedimentary carbon through time, implications of the sedimentary carbon isotope record, the biochemistry of sulfur isotope fractionation, pathways of the biogeochemical cycle of nitrogen, and the D/H ratio in naturally occurring materials.

A comparison between developed and developing countries in terms of urban land use change effects on nitrogen cycle: Paris and São Paulo metropolitan areas

NASA Astrophysics Data System (ADS)

Nardoto, Gabriela; Svirejeva-Hopkin, Anastasia; Martinelli, Luiz Antonio

2010-05-01

Urbanization is considered one of the most powerful and characteristic anthropogenic forces on Earth in the 21st century. Although, currently, cities occupy only about 2 percent of the Earth's land surface, they are home to over 50 percent of the world's population. While in cities of some developed countries, urban population might stabilize or even slightly decrease, its rate of growth in developing countries is faster than in the industrialized nations. Such increase is accompanied by growing energy production, increased food demand, expanding transportation and industrialization. Although agricultural production is by far the largest cause of the doubling in the amount of reactive nitrogen entering the biospheric cycle compared to pre-industrial conditions, nowadays more than half of the crops produced in rural areas are consumed in urban zones. Having in mind that there is a clear global trend towards urbanization and growing urban areas, the objective of this study was to compare major nitrogen fluxes between a mega city situated in a developing country (São Paulo Metropolitan Area - SPMA) in Brazil with one of the largest city of highly industrialized Europe (Paris Metropolitan Area - PMA). We make the first step in producing a detailed N mass balance for the SPMA and PMA in order to estimate the magnitude of major fluxes across the urban landscape and see how N cycling vary among urban system components. This effort may help to highlight differences between developing and developed areas and subsidize the formulation of public policies towards reduction of N related pollution of recipient systems. The N mass balance showed the SPMA as a net source of nitrogen, emitting in total about 93.5 Gg of N per year, or about 4750 g of N per capita. Most N inputs to the SPMA are directly related to food consumption, N in wastewater and landfills. These fluxes are quite amendable to management efforts to reduce N input to the receiver component of the urban ecosystem (rivers and soil). For example treated sewage effluent could be used as a source of N for some crops, especially vegetables. PMA is also a source of reactive nitrogen, emitting in total about 32 Gg of N per year, or about 3000 g of N per capita, being the major part attributed to the atmospheric emissions from transportation and energy. An important outcome of this study has been the identification of several key uncertainties regarding the N budget that require further research for either developed and developing regions studied. The following uncertainties of N cycling in an urban system need better understanding: the mechanisms of dry-deposition processes in urban systems with patchy vegetation; high NOx emissions and the increase in travel distance of smaller particles coming from modern engines; and complex patterns of air flow in the dense build-up areas. Urban soil N dynamics is very uncertain, while soil represents a major sink of N in natural ecosystems. Ultimately, the challenge is to integrate human choices and ecosystem dynamics into a multidisciplinary model of biogeochemical cycling in urban ecosystems, focusing as a first step on the quantitatively evaluating the mutual relationship between urban land-use changes and natural ecosystem from the standpoint of global N balance. To develop those schemes will require the construction of detailed ecosystem-level N balances, an in-depth understanding of the interplay of inputs, geographical and climatic factors, nonspecific management practices, and deliberate N management practices that control the fate of N in urban landscapes.

Mycorrhizal Controls on Nitrogen Uptake Drive Carbon Cycling at the Global Scale

NASA Astrophysics Data System (ADS)

Shi, M.; Fisher, J. B.; Brzostek, E. R.; Phillips, R.

2015-12-01

Nearly all plants form symbiotic relationships with one of two types of mycorrhizal fungi—arbuscular mycorrhizae (AM) and ectomycorrhizal (ECM) fungi, which are essential to global biogeochemical cycling of nutrient elements. In soils with higher rates of nitrogen and phosphorus mineralization from organic matter, AM-associated plants can be better adapted than ECM-associated plants. Importantly, the photosynthate costs of nutrient uptake for AM-associated plants are usually lower than that for ECM-associated plants. Thus, the global carbon cycle is closely coupled with mycorrhizal controls on N uptake. To investigate the potential climate dependence of terrestrial environments from AM- and ECM-associated plants, this study uses the Community Atmosphere Model (CAM) with a plant productivity-optimized N acquisition model—the Fixation and Uptake of Nitrogen (FUN) model—integrated into its land model—the Community Land Model (CLM). This latest version of CLM coupled with FUN allows for the assessment of mycorrhizal controls on global biogeochemical cycling. Here, we show how the historical evolution of AM- and ECM-associations altered regional and global biogeochemical cycling and climate, and future projections over the next century.

Seep and stream nitrogen dynamics in two adjacent mixed land use watersheds

USDA-ARS?s Scientific Manuscript database

In many headwater catchments, streamflow originates from surface seeps and springs. The objective of this study was to determine the influence of seeps on nitrogen (N) dynamics within the stream and at the outlet of two adjacent mixed land use watersheds. Nitrogen concentrations in stream water were...

Controllable embedding of sulfur in high surface area nitrogen doped three dimensional reduced graphene oxide by solution drop impregnation method for high performance lithium-sulfur batteries

NASA Astrophysics Data System (ADS)

Zegeye, Tilahun Awoke; Tsai, Meng-Che; Cheng, Ju-Hsiang; Lin, Ming-Hsien; Chen, Hung-Ming; Rick, John; Su, Wei-Nien; Kuo, Chung-Feng Jeffrey; Hwang, Bing-Joe

2017-06-01

High capacity lithium-sulfur batteries with stable cycle performance and sulfur loadings greater than 70 wt% are regarded as promising candidates for energy storage devices. However, it has been challenged to achieving practical application of sulfur cathode because of low loading of active sulfur and poor cycle performance. Herein, we design novel nanocomposite cathode materials consist of sulfur (80 wt%) embedded within nitrogen doped three-dimensional reduced graphene oxide (N-3D-rGO) by controllable sulfur-impregnation method. Nitrogen doping helps increase the surface area by ten times from pristine graphene, and pore volume by seven times. These structural features allow the cathode to hold more sulfur. It also adsorbs polysulfides and prevents their detachment from the host materials; thereby achieving stable cycle performance. The solution drop sulfur-impregnation method provides uniform distribution of nano-sulfur in controlled manner. The material delivers a high initial discharge capacity of 1042 mAhg-1 and 916 mAhg-1 with excellent capacity retention of 94.8% and 81.9% at 0.2 C and 0.5 C respectively after 100 cycles. Thus, the combination of solution drop and nitrogen doping opens a new chapter for resolving capacity fading as well as long cycling problems and creates a new strategy to increase sulfur loading in controlled mechanism.

Carbon amendment stimulates benthic nitrogen cycling during the bioremediation of particulate aquaculture waste

NASA Astrophysics Data System (ADS)

Robinson, Georgina; MacTavish, Thomas; Savage, Candida; Caldwell, Gary S.; Jones, Clifford L. W.; Probyn, Trevor; Eyre, Bradley D.; Stead, Selina M.

2018-03-01

The treatment of organic wastes remains one of the key sustainability challenges facing the growing global aquaculture industry. Bioremediation systems based on coupled bioturbation-microbial processing offer a promising route for waste management. We present, for the first time, a combined biogeochemical-molecular analysis of the short-term performance of one such system that is designed to receive nitrogen-rich particulate aquaculture wastes. Using sea cucumbers (Holothuria scabra) as a model bioturbator we provide evidence that adjusting the waste C : N from 5 : 1 to 20 : 1 promoted a shift in nitrogen cycling pathways towards the dissimilatory nitrate reduction to ammonium (DNRA), resulting in net NH4+ efflux from the sediment. The carbon amended treatment exhibited an overall net N2 uptake, whereas the control receiving only aquaculture waste exhibited net N2 production, suggesting that carbon supplementation enhanced nitrogen fixation. The higher NH4+ efflux and N2 uptake was further supported by meta-genome predictions that indicate that organic-carbon addition stimulated DNRA over denitrification. These findings indicate that carbon addition may potentially result in greater retention of nitrogen within the system; however, longer-term trials are necessary to determine whether this nitrogen retention is translated into improved sea cucumber biomass yields. Whether this truly constitutes a remediation process is open for debate as there remains the risk that any increased nitrogen retention may be temporary, with any subsequent release potentially raising the eutrophication risk. Longer and larger-scale trials are required before this approach may be validated with the complexities of the in-system nitrogen cycle being fully understood.

When high waters recede and the floodplain reemerges: Evaluating the lingering effects of extreme flooding on stream nitrogen cycling.

NASA Astrophysics Data System (ADS)

Neville, J.; Emanuel, R. E.

2017-12-01

In 2016 Hurricane Matthew brought immense flooding and devastation to the Lumbee (aka Lumber) River basin. Some impacts are obvious, such as deserted homes and businesses, but other impacts, including long-term environmental, are uncertain. Extreme flooding throughout the basin established temporary hydrologic connectivity between aquatic environments and upland sources of nutrients and other pollutants. Though 27% of the basin is covered by wetlands, hurricane-induced flooding was so intense that wetlands may have had no opportunity to mitigate delivery of nutrients into surface waters. As a result, how Hurricane Matthew impacted nitrate retention and uptake in the Lumbee River remains uncertain. The unknown magnitude of nitrate transported into the Lumbee River from surrounding sources may have lingering impacts on nitrogen cycling in this stream. With these potential impacts in mind, we conducted a Lagrangian water quality sampling campaign to assess the ability of the Lumbee River to retain and process nitrogen following Hurricane Matthew. We collected samples before and after flooding and compare first order nitrogen uptake kinetics of both periods. The analysis and comparisons allow us to evaluate the long-term impacts of Hurricane Matthew on nitrogen cycling after floodwaters recede.

Modeling reactive nitrogen in North America: recent ...

EPA Pesticide Factsheets

Nitrogen is an essential building block of all proteins and thus an essential nutrient for all life. The bulk of nitrogen in the environment is tightly bound as non-reactive N2. Reactive nitrogen, which is naturally produced via enzymatic reactions, forest fires and lightning, is continually recycled and cascades through air, water, and soil media (Galloway et al., 2003). Human activity has perturbed this cycle through the combustion of fossil fuels and synthesis of fertilizers. The anthropogenic contribution to this cycle is now larger than natural sources in the United States and globally (Galloway et al., 2004). Reactive nitrogen enters the biosphere primarily from emissions of oxidized nitrogen to the atmosphere from combustion sources, as inorganic fertilizer applied to crops as reduced nitrogen fixed from atmospheric N2 through the Haber-Bosch process, as organic fertilizers such as manure, and through the cultivation of nitrogen fixing crops (Canfield et al., 2010). Both the United States (US) Clean Air Act and the Canadian Environmental Protection Act (CEPA) have substantially reduced the emissions of oxidized nitrogen in North America through NOx controls on smokestacks and exhaust pipes (Sickles and Shadwick, 2015; AQA, 2015). However, reduced nitrogen emissions have remained constant during the last few decades of emission reductions. The National Exposure Research Laboratory’s Atmospheric Modeling Division (AMAD) c

Integrating a process-based ecosystem model with Landsat imagery to assess impacts of forest disturbance on terrestrial carbon dynamics: Case studies in Alabama and Mississippi

DOE PAGES

Chen, Guangsheng; Tian, Hanqin; Huang, Chengquan; ...

2013-07-01

Forest ecosystems in the southern United States are dramatically altered by three major disturbances: timber harvesting, hurricane, and permanent land conversion. Understanding and quantifying effects of disturbance on forest carbon, nitrogen, and water cycles is critical for sustainable forest management in this region. In this study, we introduced a process-based ecosystem model for simulating forest disturbance impacts on ecosystem carbon, nitrogen, and water cycles. Based on forest mortality data classified from Landsat TM/ETM + images, this model was then applied to estimate changes in carbon storage using Mississippi and Alabama as a case study. Mean annual forest mortality rate formore » these states was 2.37%. Due to frequent disturbance, over 50% of the forest land in the study region was less than 30 years old. Forest disturbance events caused a large carbon source (138.92 Tg C, 6.04 Tg C yr -1; 1 Tg = 10 12 g) for both states during 1984–2007, accounting for 2.89% (4.81% if disregard carbon storage changes in wood products) of the total forest carbon storage in this region. Large decreases and slow recovery of forest biomass were the main causes for carbon release. Forest disturbance could result in a carbon sink in few areas if wood product carbon was considered as a local carbon pool, indicating the importance of accounting for wood product carbon when assessing forest disturbance effects. The legacy effects of forest disturbance on ecosystem carbon storage could last over 50 years. Lastly, this study implies that understanding forest disturbance impacts on carbon dynamics is of critical importance for assessing regional carbon budgets.« less

Modelling global nitrogen export to ground and surface water from natural ecosystems: impact of N deposition, climate, and CO2 concentration

NASA Astrophysics Data System (ADS)

Braakhekke, Maarten; Rebel, Karin; Dekker, Stefan; van Beek, Rens; Bierkens, Marc; Smith, Ben; Wassen, Martin

2015-04-01

For large regions in the world strong increases in atmospheric nitrogen (N) deposition are predicted as a result of emissions from fossil fuel combustion and food production. This will cause many previously N limited ecosystems to become N saturated, leading to increased export to ground and surface water and negative impacts on the environment and human health. However, precise N export fluxes are difficult to predict. Due to its strong link to carbon, N in vegetation and soil is also determined by productivity, as affected by rising atmospheric CO2 concentration and temperature, and denitrification. Furthermore, the N concentration of water delivered to streams depends strongly on local hydrological conditions. We aim to study how N delivery to ground and surface water is affected by changes in environmental factors. To this end we are developing a global dynamic modelling system that integrates representations of N cycling in vegetation and soil, and N delivery to ground and surface water. This will be achieved by coupling the dynamic global vegetation model LPJ-GUESS, which includes representations of N cycling, as well as croplands and pasture, to the global water balance model PCR-GLOBWB, which simulates surface runoff, interflow, groundwater recharge, and baseflow. This coupling will allow us to trace N across different systems and estimate the input of N into the riverine system which can be used as input for river biogeochemical models. We will present large scale estimates of N leaching and transport to ground and surface water for natural ecosystems in different biomes, based on a loose coupling of the two models. Furthermore, by means of a factorial model experiment we will explore how these fluxes are influenced by N deposition, temperature, and CO2 concentration.

Nitrogen-Doped Holey Graphene as an Anode for Lithium-Ion Batteries with High Volumetric Energy Density and Long Cycle Life.

PubMed

Xu, Jiantie; Lin, Yi; Connell, John W; Dai, Liming

2015-12-01

Nitrogen-doped holey graphene (N-hG) as an anode material for lithium-ion batteries has delivered a maximum volumetric capacity of 384 mAh cm(-3) with an excellent long-term cycling life up to 6000 cycles, and as an electrochemical capacitor has delivered a maximum volumetric energy density of 171.2 Wh L(-1) and a volumetric capacitance of 201.6 F cm(-3) . © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Fine-scale in situ measurement of riverbed nitrate production and consumption in an armored permeable riverbed.

PubMed

Lansdown, Katrina; Heppell, Catherine M; Dossena, Matteo; Ullah, Sami; Heathwaite, A Louise; Binley, Andrew; Zhang, Hao; Trimmer, Mark

2014-04-15

Alteration of the global nitrogen cycle by man has increased nitrogen loading in waterways considerably, often with harmful consequences for aquatic ecosystems. Dynamic redox conditions within riverbeds support a variety of nitrogen transformations, some of which can attenuate this burden. In reality, however, assessing the importance of processes besides perhaps denitrification is difficult, due to a sparseness of data, especially in situ, where sediment structure and hydrologic pathways are intact. Here we show in situ within a permeable riverbed, through injections of (15)N-labeled substrates, that nitrate can be either consumed through denitrification or produced through nitrification, at a previously unresolved fine (centimeter) scale. Nitrification and denitrification occupy different niches in the riverbed, with denitrification occurring across a broad chemical gradient while nitrification is restricted to more oxic sediments. The narrow niche width for nitrification is in effect a break point, with the switch from activity "on" to activity "off" regulated by interactions between subsurface chemistry and hydrology. Although maxima for denitrification and nitrification occur at opposing ends of a chemical gradient, high potentials for both nitrate production and consumption can overlap when groundwater upwelling is strong.

Nitrogen trading tool

USDA-ARS?s Scientific Manuscript database

The nitrogen cycle is impacted by human activities, including those that increase the use of nitrogen in agricultural systems, and this impact can be seen in effects such as increased nitrate (NO3) levels in groundwater or surface water resources, increased concentration of nitrous oxide (N2O) in th...

Soil organic matter and nitrogen cycling in response to harvesting, mechanical site preparation, and fertilization in a wetland with a mineral substrate

Treesearch

James W. McLaughlin; Margaret R. Gale; Martin F. Jurgensen; Carl C. Trettin

2000-01-01

Forested wetlands are becoming an important timber resource in the Upper Great Lakes Region of the US. However, there is limited information on soil nutrient cycling responses to harvesting and post-harvest manipulations (site preparation and fertilization). The objective of this study was to examine cellulose decomposition, nitrogen mineralization, and soil solution...

Vegetation controls on carbon and nitrogen cycling and retention: contrasts in spruce and hardwood watershed budgets

Treesearch

Charlene N. Kelly; Stephen H. Schoenholtz; Mary Beth Adams

2010-01-01

Anthropogenic sources of nitrogen (N) have altered the global N cycle to such an extent as to nearly double the rate of N that enters many terrestrial ecosystems. However, predicting the fate of N inputs continues to present challenges, as a multitude of environmental factors play major roles in determining N pathways. This research investigates the role of specific...

Nitrous oxide fluxes and nitrogen cycling along a pasturechronosequence in Central Amazonia, Brazil

Treesearch

B. Wick; E. Veldkamp; W. Z. de Mello; M. Keller; P. Crill

2005-01-01

We studied nitrous oxide (N2O) fluxes and soil nitrogen (N) cycling following forest conversion to pasture in the central Amazon near Santarém, Pará, Brazil. Two undisturbed forest sites and 27 pasture sites of 0.5 to 60 years were sampled once each during wet and dry seasons. In addition to soil-atmosphere fluxes of N...

Improving dynamic phytoplankton reserve-utilization models with an indirect proxy for internal nitrogen.

PubMed

Malerba, Martino E; Heimann, Kirsten; Connolly, Sean R

2016-09-07

Ecologists have often used indirect proxies to represent variables that are difficult or impossible to measure directly. In phytoplankton, the internal concentration of the most limiting nutrient in a cell determines its growth rate. However, directly measuring the concentration of nutrients within cells is inaccurate, expensive, destructive, and time-consuming, substantially impairing our ability to model growth rates in nutrient-limited phytoplankton populations. The red chlorophyll autofluorescence (hereafter "red fluorescence") signal emitted by a cell is highly correlated with nitrogen quota in nitrogen-limited phytoplankton species. The aim of this study was to evaluate the reliability of including flow cytometric red fluorescence as a proxy for internal nitrogen status to model phytoplankton growth rates. To this end, we used the classic Quota model and designed three approaches to calibrate its model parameters to data: where empirical observations on cell internal nitrogen quota were used to fit the model ("Nitrogen-Quota approach"), where quota dynamics were inferred only from changes in medium nutrient depletion and population density ("Virtual-Quota approach"), or where red fluorescence emission of a cell was used as an indirect proxy for its internal nitrogen quota ("Fluorescence-Quota approach"). Two separate analyses were carried out. In the first analysis, stochastic model simulations were parameterized from published empirical relationships and used to generate dynamics of phytoplankton communities reared under nitrogen-limited conditions. Quota models were fitted to the dynamics of each simulated species with the three different approaches and the performance of each model was compared. In the second analysis, we fit Quota models to laboratory time-series and we calculate the ability of each calibration approach to describe the observed trajectories of internal nitrogen quota in the culture. Results from both analyses concluded that the Fluorescence-Quota approach including per-cell red fluorescence as a proxy of internal nitrogen substantially improved the ability of Quota models to describe phytoplankton dynamics, while still accounting for the biologically important process of cell nitrogen storage. More broadly, many population models in ecology implicitly recognize the importance of accounting for storage mechanisms to describe the dynamics of individual organisms. Hence, the approach documented here with phytoplankton dynamics may also be useful for evaluating the potential of indirect proxies in other ecological systems. Copyright © 2016 Elsevier Ltd. All rights reserved.

Integrated design of cryogenic refrigerator and liquid-nitrogen circulation loop for HTS cable

NASA Astrophysics Data System (ADS)

Chang, Ho-Myung; Ryu, Ki Nam; Yang, Hyung Suk

2016-12-01

A new concept of cryogenic cooling system is proposed and investigated for application to long-length HTS cables. One of major obstacles to the cable length of 1 km or longer is the difficulty in circulating liquid nitrogen (LN) along the cables, since the temperature rise and pressure drop of LN flow could be excessively large. This study attempts a breakthrough by integrating the refrigerator with the LN circulation loop in order to eliminate the cryogenic LN pumps, and generate a large LN flow with the power of compressors at ambient temperature. A variety of thermodynamic structures are investigated on standard and modified Claude cycles, where nitrogen is used as refrigerant and the LN circulation loop is included as part of the closed cycle. Four proposed cycles are fully analyzed and optimized with a process simulator (Aspen HYSYS) to evaluate the FOM (figure of merit) and examine the feasibility. The modified dual-pressure cycle cooled with expander stream is recommended for long HTS cables.

Ammonia toxicity and its prevention in inherited defects of the urea cycle.

PubMed

Walker, V

2009-09-01

The urea cycle is the final pathway for removal of surplus nitrogen from the body, and the major route in humans for detoxification of ammonia. The full complement of enzymes is expressed only in liver. Inherited deficiencies of urea cycle enzymes lead to hyperammonaemia, which causes brain damage. Severe defects present with hyperammonaemic crises in neonates. Equally devastating episodes may occur in previously asymptomatic adults with mild defects, most often X-linked ornithine transcarbamylase (OTC) deficiency. Several mechanisms probably contribute to pathogenesis. Treatment aims to reduce plasma ammonia quickly, reduce production of waste nitrogen, dispose of waste nitrogen using alternative pathways to the urea cycle and replace arginine. These therapies have increased survival and probably improve the neurological outcome. Arginine, sodium benzoate, sodium phenylbutyrate and, less often, sodium phenylacetate are used. Long-term correction is achieved by liver transplantation. Gene therapy for OTC deficiency is effective in animals, and work is ongoing to improve persistence and safety.

Year-round shotgun metagenomes reveal stable microbial communities in agricultural soils and novel ammonia oxidizers responding to fertilization.

PubMed

Orellana, Luis H; Chee-Sanford, Joanne C; Sanford, Robert A; Löffler, Frank E; Konstantinidis, Konstantinos T

2017-11-03

The dynamics of individual microbial populations and their gene functions in agricultural soils, especially after major activities such as nitrogen (N) fertilization, remain elusive but are important for better understanding nutrient cycling. Here, we analyzed 20 short-read metagenomes collected at four time points across one year from two depths (0-5 and 20-30 cm) in two Midwestern agricultural sites representing contrasting soil textures (sandy versus silty-loam), with similar cropping histories. Although microbial community taxonomic and functional compositions differed between the two locations and depths, they were more stable within a depth/site throughout the year than communities in natural water-based ecosystems. For example, among the 69 population genomes assembled from the metagenomes, 75% showed less than 2-fold change in abundance between any two sampling points. Interestingly, six deep-branching Thaumarchaeota and three complete ammonia oxidizer (comammox) Nitrospira populations increased up to 5-fold in abundance upon the addition of N fertilizer. These results indicated that indigenous archaeal ammonia oxidizers may respond faster (more copiotrophic) to N fertilization than previously thought. None of 29 recovered putative denitrifier genomes encoded the complete denitrification pathway, suggesting that denitrification is carried out by a collection of different populations. Altogether, our study identified novel microbial populations and genes responding to seasonal and human-induced perturbations in agricultural soils that should facilitate future monitoring efforts and N-related studies. Importance Even though the impact of agricultural management on the microbial community structure has already been recognized, understanding of the dynamics of individual microbial populations and what functions each population encodes are limited. Yet, this information is important for better understanding nutrient cycling, with potentially important implications for preserving nitrogen in soils and sustainability. Here we show that reconstructed metagenome-assembled genomes (MAGs) are relatively stable in their abundance and functional gene content year-round, and seasonal nitrogen fertilization has selected for novel Thaumarchaeota and comammox Nitrospira nitrifiers that are potentially less oligotrophic compared to their marine counterparts previously studied. Copyright © 2017 American Society for Microbiology.

The effect of hydraulic lift on organic matter decomposition, soil nitrogen cycling, and nitrogen acquisition by a grass species.

PubMed

Armas, Cristina; Kim, John H; Bleby, Timothy M; Jackson, Robert B

2012-01-01

Hydraulic lift (HL) is the passive movement of water through plant roots, driven by gradients in water potential. The greater soil-water availability resulting from HL may in principle lead to higher plant nutrient uptake, but the evidence for this hypothesis is not universally supported by current experiments. We grew a grass species common in North America in two-layer pots with three treatments: (1) the lower layer watered, the upper one unwatered (HL), (2) both layers watered (W), and (3) the lower layer watered, the upper one unwatered, but with continuous light 24 h a day to limit HL (no-HL). We inserted ingrowth cores filled with enriched-nitrogen organic matter ((15)N-OM) in the upper layer and tested whether decomposition, mineralization and uptake of (15)N were higher in plants performing HL than in plants without HL. Soils in the upper layer were significantly wetter in the HL treatment than in the no-HL treatment. Decomposition rates were similar in the W and HL treatments and lower in no-HL. On average, the concentration of NH(4)(+)-N in ingrowth cores was highest in the W treatment, and NO(3)(-)-N concentrations were highest in the no-HL treatment, with HL having intermediate values for both, suggesting differential mineralization of organic N among treatments. Aboveground biomass, leaf (15)N contents and the (15)N uptake in aboveground tissues were higher in W and HL than in no-HL, indicating higher nutrient uptake and improved N status of plants performing HL. However, there were no differences in total root nitrogen content or (15)N uptake by roots, indicating that HL affected plant allocation of acquired N to photosynthetic tissues. Our evidence for the role of HL in organic matter decomposition and nutrient cycling suggests that HL could have positive effects on plant nutrient dynamics and nutrient turnover.

Environmental Biochemistry--A New Approach for Teaching the Cycles of the Elements.

ERIC Educational Resources Information Center

Ricci, Juan C. Diaz; And Others

1988-01-01

Presents three dimensional models of biological pathways for the following cycles: carbon, nitrogen, sulfur, and a combination of the three. Discusses steps involved in each cycle and breaks each cycle into trophic and environmental regions. (MVL)

Exhaustive Conversion of Inorganic Nitrogen to Nitrogen Gas Based on a Photoelectro-Chlorine Cycle Reaction and a Highly Selective Nitrogen Gas Generation Cathode.

PubMed

Zhang, Yan; Li, Jinhua; Bai, Jing; Shen, Zhaoxi; Li, Linsen; Xia, Ligang; Chen, Shuai; Zhou, Baoxue

2018-02-06

A novel method for the exhaustive conversion of inorganic nitrogen to nitrogen gas is proposed in this paper. The key properties of the system design included an exhaustive photoelectrochemical cycle reaction in the presence of Cl - , in which Cl· generated from oxidation of Cl - by photoholes selectively converted NH 4 + to nitrogen gas and some NO 3 - or NO 2 - . The NO 3 - or NO 2 - was finally reduced to nitrogen gas on a highly selective Pd-Cu-modified Ni foam (Pd-Cu/NF) cathode to achieve exhaustive conversion of inorganic nitrogen to nitrogen gas. The results indicated total nitrogen removal efficiencies of 30 mg L -1 inorganic nitrogen (NO 3 - , NH 4 + , NO 3 - /NH 4 + = 1:1 and NO 2 - /NO 3 - /NH 4 + = 1:1:1) in 90 min were 98.2%, 97.4%, 93.1%, and 98.4%, respectively, and the remaining nitrogen was completely removed by prolonging the reaction time. The rapid reduction of nitrate was ascribed to the capacitor characteristics of Pd-Cu/NF that promoted nitrate adsorption in the presence of an electric double layer, eliminating repulsion between the cathode and the anion. Nitrate was effectively removed with a rate constant of 0.050 min -1 , which was 33 times larger than that of Pt cathode. This system shows great potential for inorganic nitrogen treatment due to the high rate, low cost, and clean energy source.

Combined Brayton-JT cycles with refrigerants for natural gas liquefaction

NASA Astrophysics Data System (ADS)

Chang, Ho-Myung; Park, Jae Hoon; Lee, Sanggyu; Choe, Kun Hyung

2012-06-01

Thermodynamic cycles for natural gas liquefaction with single-component refrigerants are investigated under a governmental project in Korea, aiming at new processes to meet the requirements on high efficiency, large capacity, and simple equipment. Based upon the optimization theory recently published by the present authors, it is proposed to replace the methane-JT cycle in conventional cascade process with a nitrogen-Brayton cycle. A variety of systems to combine nitrogen-Brayton, ethane-JT and propane-JT cycles are simulated with Aspen HYSYS and quantitatively compared in terms of thermodynamic efficiency, flow rate of refrigerants, and estimated size of heat exchangers. A specific Brayton-JT cycle is suggested with detailed thermodynamic data for further process development. The suggested cycle is expected to be more efficient and simpler than the existing cascade process, while still taking advantage of easy and robust operation with single-component refrigerants.

Experimental investigation of anaerobic nitrogen fixation rates with varying pressure, temperature and metal concentration with application to the atmospheric evolution of early Earth and Mars.

NASA Astrophysics Data System (ADS)

Gupta, Prateek

2012-07-01

The atmosphere of the early Earth is thought to have been significantly different than the modern composition of 21% O2 and 78% N2, yet the planet has been clearly established as hosting microbial life as far back as 3.8 billion years ago. As such, constraining the atmospheric composition of the early Earth is fundamental to establishing a database of habitable atmospheric compositions. A similar argument can be made for the planet Mars, where nitrates have been hypothesized to exist in the subsurface. During the early period on Mars when liquid water was likely more abundant, life may have developed to take advantage of available nitrates and a biologically-driven Martian nitrogen cycle could have evolved. Early Earth atmospheric composition has been investigated numerically, but only recently has the common assumption of a pN2 different than modern been investigated. Nonetheless, these latest attempts fail to take into account a key atmospheric parameter: life. On modern Earth, nitrogen is cycled vigorously by biology. The nitrogen cycle likely operated on the early Earth, but probably differed in the metabolic processes responsible, dominantly due to the lack of abundant oxygen which stabilizes oxidized forms of N that drive de-nitrification today. Recent advances in evolutionary genomics suggest that microbial pathways that are relatively uncommon today (i.e. vanadium and iron-based nitrogen fixation) probably played important roles in the early N cycle. We quantitatively investigate in the laboratory the effects of variable pressure, temperature and metal concentration on the rates of anoxic nitrogen fixation, as possible inputs for future models investigating atmospheric evolution, and better understand the evolution of the nitrogen cycle on Earth. A common anaerobic methanogenic archaeal species with i) a fully sequenced genome, ii) all three nitrogenases (molybdenum, vanadium and iron-based) and iii) the ability to be genetically manipulated will be used as a model species. This species will be genetically modified to create knock-out mutants lacking one or more nitrogenase genes. These mutants will be used in variable pressure, temperature and metal-concentration experiments. Nitrogen fixation rate and nitrogenase gene expression will be measured using isotope dilution and quantitative polymerase chain reaction, respectively.

Seep and stream nitrogen dynamics in two adjacent mixed land use watersheds

USDA-ARS?s Scientific Manuscript database

In many headwater catchments, stream flow originates from surface seeps and springs. The objective of this study was to determine the influence of seeps on nitrogen (N) dynamics within the stream and at the outlet of two adjacent mixed land use watersheds. Nitrogen concentrations in stream water wer...

Design of high-efficiency Joule-Thomson cycles for high-temperature superconductor power cable cooling

NASA Astrophysics Data System (ADS)

Jin, Lingxue; Lee, Cheonkyu; Baek, Seungwhan; Jeong, Sangkwon

2018-07-01

Liquid nitrogen (LN2) is commonly used as the coolant of a high temperature superconductor (HTS) power cable. The LN2 is continuously cooled by a subcooler to maintain an appropriate operating temperature of the cable. This paper proposes two Joule-Thomson (JT) refrigeration cycles for subcooling the LN2 coolant by using nitrogen itself as the working fluid. Additionally, an innovative HTS cooling cycle, of which the cable coolant and the refrigerant are unified and supplied from the same source, is suggested and analyzed in detail. Among these cycles, the highest COP is obtained in the JT cycle with a vacuum pump (Cycle A) which is 0.115 at 78 K, and the Carnot efficiency is 32.8%. The integrated HTS cooling cycle (Cycle C) can reach the maximum COP of 0.087, and the Carnot efficiency of 24.8%. Although Cycle C has a relatively low cycle efficiency when compared to that of the separated refrigeration cycle, it can be a good alternative in engineering applications, because the assembled hardware has few machinery components in a more compact configuration than the other cycles.

Managing urban nutrient biogeochemistry for sustainable urbanization.

PubMed

Lin, Tao; Gibson, Valerie; Cui, Shenghui; Yu, Chang-Ping; Chen, Shaohua; Ye, Zhilong; Zhu, Yong-Guan

2014-09-01

Urban ecosystems are unique in the sense that human activities are the major drivers of biogeochemical processes. Along with the demographic movement into cities, nutrients flow towards the urban zone (nutrient urbanization), causing the degradation of environmental quality and ecosystem health. In this paper, we summarize the characteristics of nutrient cycling within the urban ecosystem compared to natural ecosystems. The dynamic process of nutrient urbanization is then explored taking Xiamen city, China, as an example to examine the influence of rapid urbanization on food sourced nitrogen and phosphorus metabolism. Subsequently, the concept of a nutrient footprint and calculation method is introduced from a lifecycle perspective. Finally, we propose three system approaches to mend the broken biogeochemical cycling. Our study will contribute to a holistic solution which achieves synergies between environmental quality and food security, by integrating technologies for nutrient recovery and waste reduction. Copyright © 2014 Elsevier Ltd. All rights reserved.

AN EMERGY ANALYSIS OF THE GLOBAL NITROGEN CYCLE

EPA Science Inventory

Human use of fossil fuel to build and support a global society during the past 150 years has resulted in major changes in the annual biogeochemical fluxes of nitrogen through the terrestrial, oceanic and atmospheric systems of the earth. The various forms of nitrogen produced by ...

Modeling the Air-Vegetation-Soil Exchange of Reactive Nitrogen

EPA Science Inventory

Nitrogen is an essential building block of all proteins and thus an essential nutrient for all life. However, in excess reactive nitrogen can lead to poor air or water quality, loss of biodiversity, and impact respiratory and cardiac health. Human activity has perturbed this cycl...

Just enough of a good thing: Ecosystem services and the management of nitrogen

EPA Science Inventory

From factory emissions to fertilizer, people have dramatically altered the global nitrogen cycle. The effects are often harmful, such as groundwater pollution with nitrate here in Oregon. Jana Compton will present EPA research that connects the impacts of nitrogen to ecosystem ...

Dynamic seasonal nitrogen cycling in response to anthropogenic N-loading in a tropical catchment, Athi-Galana-Sabaki River, Kenya

NASA Astrophysics Data System (ADS)

Marwick, T. R.; Tamooh, F.; Ogwoka, B.; Teodoru, C.; Borges, A. V.; Darchambeau, F.; Bouillon, S.

2013-05-01

As part of a broader study on the riverine biogeochemistry in the Athi-Galana-Sabaki (A-G-S) River catchment (Kenya), we present data constraining the sources, transit and transformation of multiple nitrogen (N) species as they flow through the A-G-S catchment (~47 000 km2). The data-set was obtained in August-September 2011, November 2011, and April-May 2012, covering the dry season, short-rain season and long-rain season respectively. Release of, largely untreated, waste water from the city of Nairobi had a profound impact on the biogeochemistry of the upper Athi river, leading to low dissolved oxygen (DO) saturation levels (67-36%), high ammonium (NH4+) concentrations (1193-123 μmol L-1), and high dissolved methane (CH4) concentrations (6729-3765 nmol L-1). Total dissolved inorganic nitrogen (DIN) concentrations entering the study area were highest during the dry season (1195 μmol L-1), while total DIN concentration was an order of magnitude lower during the short and long rain seasons (212 and 193 μmol L-1, respectively). During the rain seasons, low water residence time led to relatively minimal instream N-cycling prior to discharge to the ocean. Conversely, increased residence time during the dry season creates two differences comparative to wet season conditions, where (1) intense cycling and removal of DIN in the upper- to mid-catchment leads to significantly less DIN export during the dry season, and (2) as a result of the intense DIN cycling, dry season particulate N export is significantly enriched in the N stable isotope ratio (δ15NPN), strongly reflecting the dominance of organic matter as the prevailing source of riverine nitrogen. The rapid removal of NH4+ in the upper study area during the dry season was accompanied by a quantitatively similar production of NO3- and nitrous oxide (N2O) downstream, pointing towards strong nitrification over this reach during the dry season. Nitrous oxide produced was rapidly degassed downstream, while the elevated NO3- concentrations steadily decreased to levels observed elsewhere in more pristine African river networks. Low pelagic primary production rates over the same reach suggest that benthic denitrification was the dominant process controlling the removal of NO3-, although large cyanobacterial blooms further downstream highlight the significant role of DIN assimilation by primary producers in the drainage network. The intense upper- to mid-catchment N-cycling leads to a significantly enriched δ15NPN during the dry season (mean: +16.5 ± 8.2‰ but reaching as high as +31.5‰) compared to the short (+7.3 ± 2.6‰) and long (+7.6 ± 5.9‰) rain seasons. A strong correlation found between seasonal δ15NPN and oxygen stable isotope ratios (δ18OH2O; as a proxy of freshwater discharge) presents the possibility of employing a combination of proxies, such as δ15NPN of sediments, bivalves and near-shore corals, to reconstruct how historical land-use changes have influenced nitrogen cycling within the catchment, whilst potentially providing foresight in the impacts of future land management decisions.

Elucidation of major contributors involved in nitrogen removal and transcription level of nitrogen-cycling genes in activated sludge from WWTPs

NASA Astrophysics Data System (ADS)

Che, You; Liang, Peixin; Gong, Ting; Cao, Xiangyu; Zhao, Ying; Yang, Chao; Song, Cunjiang

2017-03-01

We investigated nitrogen-cycle bacterial communities in activated sludge from 8 municipal wastewater treatment plants (WWTPs). Redundancy analyses (RDA) showed that temperature was the most significant driving force in shaping microbial community structure, followed by influent NH4+ and total nitrogen (TN). The diversity of ammonia oxidizing and nitrite reducing bacteria were investigated by the construction of amoA, nirS and nirK gene clone libraries. Phylogenetic analysis indicated that Thauera and Mesorhizobium were the predominant nitrite reducing bacteria, and Nitrosomonas was the only detected ammonia oxidizing bacteria in all samples. Quantification of transcription level of nirS and nirK genes indicated that nirS-type nitrite reducing bacteria played the dominant roles in nitrite reduction process. Transcription level of nirS gene positively correlated with influent NH4+ and TN significantly, whereas inversely linked with hydraulic retention time. Temperature had a strong positive correlation to transcription level of amoA gene. Overall, this study deepened our understanding of the major types of ammonia oxidizing and nitrite reducing bacteria in activated sludge of municipal WWTPs. The relationship between transcription level of nitrogen-cycle genes and operational or environmental variables of WWTPs revealed in this work could provide guidance for optimization of operating parameters and improving the performance of nitrogen removal.

Short-term effects of tidal flooding on soil nitrogen mineralization in a Chinese tidal salt marsh

NASA Astrophysics Data System (ADS)

Gao, Haifeng; Bai, Junhong; Deng, Xiaoya; Lu, Qiongqiong; Ye, Xiaofei

2018-02-01

Tidal flooding is an important control of nitrogen biogeochemistry in wetland ecosystems of Yellow River Delta, China. Variations in hydrology could change soil redox dynamics and conditions for microorganisms living. A tidal simulation experiment was designed to extract tidal flooding effect on nitrogen mineralization of salt marsh soil. Inorganic nitrogen and relevant enzyme were measured during the 20-day incubation period. Considering the variation of both inorganic N and enzymes, nitrogen mineralization process in tidal salt marsh could be divided into 2 phases of short term response and longtime adaption by around 12th incubation day as the inflection point. Soil ammonium nitrogen (NH4+-N) and volatilized ammonia (NH3) occupied the mineralization process since nitrate nitrogen (NO3--N) was not detected over whole incubation period. NH4+-N varied fluctuant and increased significantly after 12 day's incubation. Released NH3 reached to peak value of 14.24 mg m-2 d-1 at the inflection point and declined thereafter. Inorganic nitrogen released according to net nitrogen mineralization rate (RM) under the tidal flooding condition without plant uptake except first 2 days. However, during the transitional period of 6-12 days, RM decreased notably to almost 0 and increased again after inflection point with the value of 0.182 mg kg-1 d-1. It might be due to the change of microbial composition and function when soil shifted from oxic to anoxic, which were reflected by arylamidase, urease and fluorescein diacetate. Fluorescein diacetate hydrolysis and arylamidase had the similar variation of U style with decreasing activities before 12 days' incubation. All the enzymes measured in this experiment increased after inflection point. Whereas, urease activity kept constant from 2 to 12 days. Alternant oxidation reduction condition would increase N loss through denitrification and ammonia volatilization during the transitional period, while more inorganic nitrogen would be available in reductive environment of long-term tidal flooding. Therefore, hydrological process regulation has great influence on nitrogen cycling and further influence on wetland productivity.

Statistical persistence of air pollutants (O3,SO2,NO2 and PM10) in Mexico City

NASA Astrophysics Data System (ADS)

Meraz, M.; Rodriguez, E.; Femat, R.; Echeverria, J. C.; Alvarez-Ramirez, J.

2015-06-01

The rescaled range (R / S) analysis was used for analyzing the statistical persistence of air pollutants in Mexico City. The air-pollution time series consisted of hourly observations of ozone, nitrogen dioxide, sulfur dioxide and particulate matter obtained at the Mexico City downtown monitoring station during 1999-2014. The results showed that long-range persistence is not a uniform property over a wide range of time scales, from days to months. In fact, although the air pollutant concentrations exhibit an average persistent behavior, environmental (e.g., daily and yearly) and socio-economic (e.g., daily and weekly) cycles are reflected in the dependence of the persistence strength as quantified in terms of the Hurst exponent. It was also found that the Hurst exponent exhibits time variations, with the ozone and nitrate oxide concentrations presenting some regularity, such as annual cycles. The persistence dynamics of the pollutant concentrations increased during the rainy season and decreased during the dry season. The time and scale dependences of the persistence properties provide some insights in the mechanisms involved in the internal dynamics of the Mexico City atmosphere for accumulating and dissipating dangerous air pollutants. While in the short-term individual pollutants dynamics seems to be governed by specific mechanisms, in the long-term (for monthly and higher scales) meteorological and seasonal mechanisms involved in atmospheric recirculation seem to dominate the dynamics of all air pollutant concentrations.

The Pitcher Plant Sarracenia purpurea Can Directly Acquire Organic Nitrogen and Short-Circuit the Inorganic Nitrogen Cycle

PubMed Central

Karagatzides, Jim D.; Butler, Jessica L.; Ellison, Aaron M.

2009-01-01

Background Despite the large stocks of organic nitrogen in soil, nitrogen availability limits plant growth in many terrestrial ecosystems because most plants take up only inorganic nitrogen, not organic nitrogen. Although some vascular plants can assimilate organic nitrogen directly, only recently has organic nitrogen been found to contribute significantly to the nutrient budget of any plant. Carnivorous plants grow in extremely nutrient-poor environments and carnivory has evolved in these plants as an alternative pathway for obtaining nutrients. We tested if the carnivorous pitcher plant Sarracenia purpurea could directly take up intact amino acids in the field and compared uptake of organic and inorganic forms of nitrogen across a gradient of nitrogen deposition. We hypothesized that the contribution of organic nitrogen to the nitrogen budget of the pitcher plant would decline with increasing nitrogen deposition. Methodology and Principal Findings At sites in Canada (low nitrogen deposition) and the United States (high nitrogen deposition), individual pitchers were fed two amino acids, glycine and phenylalanine, and inorganic nitrogen (as ammonium nitrate), individually and in mixture. Plants took up intact amino acids. Acquisition of each form of nitrogen provided in isolation exceeded uptake of the same form in mixture. At the high deposition site, uptake of organic nitrogen was higher than uptake of inorganic nitrogen. At the low deposition site, uptake of all three forms of nitrogen was similar. Completeness of the associated detritus-based food web that inhabits pitcher-plant leaves and breaks down captured prey had no effect on nitrogen uptake. Conclusions and Significance By taking up intact amino acids, Sarracenia purpurea can short-circuit the inorganic nitrogen cycle, thus minimizing potential bottlenecks in nitrogen availability that result from the plant's reliance for nitrogen mineralization on a seasonally reconstructed food web operating on infrequent and irregular prey capture. PMID:19582167

POPULATION DYNAMICS OF HISPID COTTON RATS (SIGMODON HISPIDUS) ACROSS A NITROGEN AMENDED LANDSCAPE

EPA Science Inventory

Population dynamics of some small-mammal species appear to be regulated by plant-community structure, vegetative cover, plant diversity, and food quality. Thus, plant community changes associated with nitrogen additions would likely impact dynamics and structure of small-mammal ...

The natural and perturbed troposphere

NASA Technical Reports Server (NTRS)

Stewart, R. W.; Hameed, S.; Pinto, J.

1978-01-01

A quantitative assessment of the chemical and climatic effects of industrial emissions into the atmosphere requires an understanding of the complex interactions of species within the atmosphere and of the atmosphere with other physical systems such as the oceans, lithosphere, and biosphere. The concentration of a particular species is determined by competition between various production and loss processes. The abundances of tropospheric gases are examined. The reactions of the members of the oxygen group are considered along with the models which have been developed to describe the involved relationships. Attention is also given to the natural carbon cycle, perturbations to the carbon cycle, the natural nitrogen cycle, perturbations to the nitrogen cycle, the hydrogen group, the sulfur group, and the halogen group.

Plasma-assisted nitrogen doping of VACNTs for efficiently enhancing the supercapacitor performance

NASA Astrophysics Data System (ADS)

Mashayekhi, Alireza; Hosseini, Seyed Mahmoud; Hassanpour Amiri, Morteza; Namdar, Naser; Sanaee, Zeinab

2016-06-01

Nitrogen doping of vertically aligned carbon nanotubes (VACNTs) using plasma-enhanced chemical vapour deposition has been investigated to improve the supercapacitance performance of CNTs. Incorporating electrochemical measurements on the open-ended nitrogen-doped CNTs, showed the achievement of 6 times improvement in the capacitance value. For nitrogen-doped CNTs on silicon substrate, specific capacitance of 60 F g-1 was obtained in 0.5 M KCl solution, with capacity retention ratio above 90 % after cycled at 0.1 A g-1 for 5000 cycles. Using this sample, a symmetric supercapacitance was fabricated which showed the power density of 37.5 kW kg-1. The facile fabrication approach and its excellent capacitance improvement, propose it as an efficient technique for enhancing the supercapacitance performance of the carbon-based electrodes.

Effect of Water Chemistry and Hydrodynamics on Nitrogen Transformation Activity and Microbial Community Functional Potential in Hyporheic Zone Sediment Columns

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Yuanyuan; Liu, Chongxuan; Nelson, William C.

Nitrogen (N) transformation in hyporheic zone (HZ) is an important component in N-cycling in ecosystems. A column study was conducted to investigate N transformation in a HZ sediment with a focus on how characteristic HZ properties including water chemistry, fluid residence time, and dynamic groundwater and surface water exchange affect on N transformation. Metagenomic and quantitative polymerase chain reaction (qPCR) analyses were performed to evaluate the dynamic changes in microbial community structure and its function in response to N transformation. The results indicated that N transformation in the HZ sediment was collectively controlled by microbial community functions including: denitrification, dissimilatorymore » nitrate reduction to ammonium (DNRA), nitrification, and anaerobic ammonium oxidation (anammox). However, the spatial distribution of the microbial community functions and associated biogeochemical reaction rates and products changed quickly in response to experimental perturbation, and was influenced by various factors including water chemistry (dissolved O2 and N species), desorption of sediment associated organic carbon, ion exchange reactions of NH4+, and fluid residence time. The results of this study implied that the microbial community in the HZ would exhibit strong function zonation along N and O gradients, which in turn would control the rates and products of N transformation.« less

Do Nutrient Limitation Patterns Shift from Nitrogen Toward Phosphorus with Increasing Nitrogen Deposition Across the Northeastern United States?

EPA Science Inventory

Atmospheric nitrogen (N) deposition is altering biogeochemical cycling in forests and interconnected lakes of the northeastern US, and may shift nutrient limitation from N toward other essential elements, such as phosphorus (P). Whether this shift is occurring relative to N depos...

Native Mussels Alter Nutrient Availability and Reduce Blue ...

EPA Pesticide Factsheets

Nutrient cycling is a key process that ties all organisms together. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of different elements are interdependent because the organisms that drive these cycles require fixed ratios of nutrients. There is growing recognition that animals play an important role in biogeochemical cycling across ecosystems. In particular, dense aggregations of consumers can create biogeochemical hotspots in aquatic ecosystems via nutrient translocation. We predicted that filter-feeding freshwater mussels, which occur as speciose, high biomass aggregates, would create biogeochemical hotspots in streams by altering nutrient limitation and algal dynamics. In a field study, we manipulated nitrogen and phosphorus using nutrient-diffusing substrates in areas with high and low mussel abundance, recorded algal growth and community composition, and determined in situ mussel excretion stoichiometry at 18 sites in 3 rivers (Kiamichi, Little, and Mt. Fork rivers, southcentral U.S.). Our results indicate that mussels greatly influence ecosystem processes by modifying the nutrients that limit primary productivity. Sites without mussels were N-limited with ~26% higher abundances of N-fixing blue-green algae, while sites with high mussel densities were co-limited (N and P) and dominated by diatoms

The Role of Atmospheric Organic Nitrogen in Forest Nitrogen Cycling

NASA Astrophysics Data System (ADS)

Lockwood, A.; Shepson, P.; Rhodes, D.

2003-12-01

Changes in the global climate and atmosphere cause significant effects to the biosphere. Forests respond to these global changes in various ways which all can affect their ability to store carbon, which in turn impacts climate change. Many temperate latitude forests are nitrogen-limited. A current working hypothesis is that atmospheric nitrogen compounds that are deposited to the canopy may be directly utilized by the plant as a nitrogen source. A significant fraction of atmospheric reactive nitrogen that can be deposited is organic. Organic nitrogen deposition is not well characterized nor have the ecological consequences been assessed. Our hypothesis is that organic nitrogen deposition to the canopy is significant, and that that nitrogen is utilized by trees. Fumigation experiments were conducted with 14N and 15N-labeled organic nitrates (focusing on 1-nitrooxy-3-methyl butane as a surrogate for isoprene nitrates) to determine if and how that nitrogen gets incorporated into the leaves by detecting the 15N-labeled leaf amino acids. This research builds on work completed during past summer intensives as part of the Program for Research on Oxidants: PHotochemistry, Emissions, and Transport (PROPHET), and begins the next stage of research as part of the Biosphere Atmosphere Research & Training program (BART) at the University of Michigan Biological Station (UMBS). The overall goal of the new effort, the Biosphere Exchange of Atmospheric Carbon and Odd Nitrogen (BEACON) program, is to evaluate the interactive roles of the atmosphere and forest in the coupling of the carbon and nitrogen cycles.

Representing leaf and root physiological traits in CLM improves global carbon and nitrogen cycling predictions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ghimire, Bardan; Riley, William J.; Koven, Charles D.

In many ecosystems, nitrogen is the most limiting nutrient for plant growth and productivity. However, current Earth System Models (ESMs) do not mechanistically represent functional nitrogen allocation for photosynthesis or the linkage between nitrogen uptake and root traits. The current version of CLM (4.5) links nitrogen availability and plant productivity via (1) an instantaneous downregulation of potential photosynthesis rates based on soil mineral nitrogen availability, and (2) apportionment of soil nitrogen between plants and competing nitrogen consumers assumed to be proportional to their relative N demands. However, plants do not photosynthesize at potential rates and then downregulate; instead photosynthesis ratesmore » are governed by nitrogen that has been allocated to the physiological processes underpinning photosynthesis. Furthermore, the role of plant roots in nutrient acquisition has also been largely ignored in ESMs. We therefore present a new plant nitrogen model for CLM4.5 with (1) improved representations of linkages between leaf nitrogen and plant productivity based on observed relationships in a global plant trait database and (2) plant nitrogen uptake based on root-scale Michaelis-Menten uptake kinetics. Our model improvements led to a global bias reduction in GPP, LAI, and biomass of 70%, 11%, and 49%, respectively. Furthermore, water use efficiency predictions were improved conceptually, qualitatively, and in magnitude. The new model's GPP responses to nitrogen deposition, CO 2 fertilization, and climate also differed from the baseline model. The mechanistic representation of leaf-level nitrogen allocation and a theoretically consistent treatment of competition with belowground consumers led to overall improvements in global carbon cycling predictions.« less

Representing leaf and root physiological traits in CLM improves global carbon and nitrogen cycling predictions

DOE PAGES

Ghimire, Bardan; Riley, William J.; Koven, Charles D.; ...

2016-05-01

In many ecosystems, nitrogen is the most limiting nutrient for plant growth and productivity. However, current Earth System Models (ESMs) do not mechanistically represent functional nitrogen allocation for photosynthesis or the linkage between nitrogen uptake and root traits. The current version of CLM (4.5) links nitrogen availability and plant productivity via (1) an instantaneous downregulation of potential photosynthesis rates based on soil mineral nitrogen availability, and (2) apportionment of soil nitrogen between plants and competing nitrogen consumers assumed to be proportional to their relative N demands. However, plants do not photosynthesize at potential rates and then downregulate; instead photosynthesis ratesmore » are governed by nitrogen that has been allocated to the physiological processes underpinning photosynthesis. Furthermore, the role of plant roots in nutrient acquisition has also been largely ignored in ESMs. We therefore present a new plant nitrogen model for CLM4.5 with (1) improved representations of linkages between leaf nitrogen and plant productivity based on observed relationships in a global plant trait database and (2) plant nitrogen uptake based on root-scale Michaelis-Menten uptake kinetics. Our model improvements led to a global bias reduction in GPP, LAI, and biomass of 70%, 11%, and 49%, respectively. Furthermore, water use efficiency predictions were improved conceptually, qualitatively, and in magnitude. The new model's GPP responses to nitrogen deposition, CO 2 fertilization, and climate also differed from the baseline model. The mechanistic representation of leaf-level nitrogen allocation and a theoretically consistent treatment of competition with belowground consumers led to overall improvements in global carbon cycling predictions.« less

Representing leaf and root physiological traits in CLM improves global carbon and nitrogen cycling predictions

NASA Astrophysics Data System (ADS)

Ghimire, Bardan; Riley, William J.; Koven, Charles D.; Mu, Mingquan; Randerson, James T.

2016-06-01

In many ecosystems, nitrogen is the most limiting nutrient for plant growth and productivity. However, current Earth System Models (ESMs) do not mechanistically represent functional nitrogen allocation for photosynthesis or the linkage between nitrogen uptake and root traits. The current version of CLM (4.5) links nitrogen availability and plant productivity via (1) an instantaneous downregulation of potential photosynthesis rates based on soil mineral nitrogen availability, and (2) apportionment of soil nitrogen between plants and competing nitrogen consumers assumed to be proportional to their relative N demands. However, plants do not photosynthesize at potential rates and then downregulate; instead photosynthesis rates are governed by nitrogen that has been allocated to the physiological processes underpinning photosynthesis. Furthermore, the role of plant roots in nutrient acquisition has also been largely ignored in ESMs. We therefore present a new plant nitrogen model for CLM4.5 with (1) improved representations of linkages between leaf nitrogen and plant productivity based on observed relationships in a global plant trait database and (2) plant nitrogen uptake based on root-scale Michaelis-Menten uptake kinetics. Our model improvements led to a global bias reduction in GPP, LAI, and biomass of 70%, 11%, and 49%, respectively. Furthermore, water use efficiency predictions were improved conceptually, qualitatively, and in magnitude. The new model's GPP responses to nitrogen deposition, CO2 fertilization, and climate also differed from the baseline model. The mechanistic representation of leaf-level nitrogen allocation and a theoretically consistent treatment of competition with belowground consumers led to overall improvements in global carbon cycling predictions.

Testing the limits in a greenhouse ocean: Did low nitrogen availability limit marine productivity during the end-Triassic mass extinction?

NASA Astrophysics Data System (ADS)

Schoepfer, Shane D.; Algeo, Thomas J.; Ward, Peter D.; Williford, Kenneth H.; Haggart, James W.

2016-10-01

The end-Triassic mass extinction has been characterized as a 'greenhouse extinction', related to rapid atmospheric warming and associated changes in ocean circulation and oxygenation. The response of the marine nitrogen cycle to these oceanographic changes, and the extent to which mass extinction intervals represent a deviation in nitrogen cycling from other ice-free 'greenhouse' periods of Earth history, remain poorly understood. The well-studied Kennecott Point section in Haida Gwaii, British Columbia, Canada, was deposited in the open Panthalassic Ocean, and is used here as a test case to better understand changes in the nitrogen cycle and marine productivity from the pre-crisis greenhouse of the Rhaetian to the latest-Rhaetian crisis interval. We estimated marine productivity from the late Norian to the early Hettangian using TOC- and P-based paleoproductivity transform equations, and then compared these estimates to records of sedimentary nitrogen isotopes, redox-sensitive trace elements, and biomarker data. Major negative excursions in δ15N (to ≤ 0 ‰) correspond to periods of depressed marine productivity. During these episodes, the development of a stable pycnocline below the base of the photic zone suppressed vertical mixing and limited N availability in surface waters, leading to low productivity and increased nitrogen fixation, as well as ecological stresses in the photic zone. The subsequent shoaling of euxinic waters into the ocean surface layer was fatal for most Triassic marine fauna, although the introduction of regenerated NH4+ into the photic zone may have allowed phytoplankton productivity to recover. These results indicate that the open-ocean nitrogen cycle was influenced by climatic changes during the latest Triassic, despite having existed in a greenhouse state for over 50 million years previously, and that low N availability limited marine productivity for hundreds of thousands of years during the end-Triassic crisis.

Space Shuttle Projects

NASA Image and Video Library

1992-09-12

This STS-48 onboard photo is of the Upper Atmosphere Research Satellite (UARS) in the grasp of the RMS (Remote Manipulator System) during deployment, September 1991. UARS gathers data related to the chemistry, dynamics, and energy of the ozone layer. UARS data is used to study energy input, stratospheric photo chemistry, and upper atmospheric circulation. UARS helps us understand and predict how the nitrogen and chlorine cycles, and the nitrous oxides and halo carbons which maintain them, relate to the ozone balance. It also observes diurnal variations in short-lived stratospheric chemical species important to ozone destruction. Data from UARS enables scientists to study ozone depletion in the upper atmosphere.

Space Shuttle Projects

NASA Image and Video Library

1991-09-12

This STS-48 onboard photo is of the Upper Atmosphere Research Satellite (UARS) in the grasp of the RMS (Remote Manipulator System) during deployment, September 1991. UARS gathers data related to the chemistry, dynamics, and energy of the ozone layer. UARS data is used to study energy input, stratospheric photo chemistry, and upper atmospheric circulation. UARS helps us understand and predict how the nitrogen and chlorine cycles, and the nitrous oxides and halo carbons which maintain them, relate to the ozone balance. It also observes diurnal variations in short-lived stratospheric chemical species important to ozone destruction. Data from UARS enables scientists to study ozone depletion in the upper atmosphere.

Macroscopic behavior and fluctuation-dissipation response of stochastic ecohydrological systems

NASA Astrophysics Data System (ADS)

Porporato, A. M.

2017-12-01

The coupled dynamics of water, carbon and nutrient cycles in ecohydrological systems is forced by unpredictable and intermittent hydroclimatic fluctuations at different time scales. While modeling and long-term prediction of these complex interactions often requires a probabilistic approach, the resulting stochastic equations however are only solvable in special cases. To obtain information on the behavior of the system one typically has to resort to approximation methods. Here we discuss macroscopic equations for the averages and fluctuation-dissipation estimates for the general correlations between the forcing and the ecohydrological response for the soil moisture-plant biomass interaction and the problem of primary salinization and nitrogen retention in soils.

Stable Isotopic Composition of Dissolved Organic Nitrogen Fueling Brown Tide in a Semi-Arid Texas Estuary

NASA Astrophysics Data System (ADS)

Campbell, J.; Felix, J. D. D.; Wetz, M.; Cira, E.

2017-12-01

Harmful algal blooms (HABs) have the potential to adversely affect the water quality of estuaries and, consequently, their ability to support healthy and diverse ecosystems. Since the early 1990s, Baffin Bay, a semi-arid south Texas estuary, has progressively experienced harmful algal blooms. The primary species of HAB native to the Baffin Bay region, Aureoumbra lagunensis, is unable to utilize nitrate as a nutrient source, but instead relies on forms of reduced nitrogen (such as dissolved organic nitrogen (DON) and ammonium (NH4+)) for survival. DON levels in Baffin Bay (77 ± 10 µM) exceed the DON concentrations of not only typical Texas estuaries, but estuaries worldwide. Additionally, DON accounts for 90% of the total dissolved nitrogen (TDN) in Baffin Bay, followed by NH4+ at 8%, and NO3-+NO2- contributing 2%. Due to the dependence of A. lagunensis on the reduced forms of nitrogen as an energy source and the elevated concentrations of DON throughout the bay, it is important to identify the origin of this nitrogen as well as how it's being processed as it cycles through the ecosystem. The presented work investigates the stable isotopic composition of reactive nitrogen (Nr) (δ15N-DON, δ15N-NH4+, and δ15N-NO3-) in Baffin Bay samples collected monthly at nine stations over the period of one year. The work provides preliminary evidence of Nr sources and mechanisms driving favorable conditions for HAB proliferation. This information can be useful and applicable to estuarine ecosystems in various settings, advancing scientific progress towards mitigating blooms. Additionally, since the elevated concentrations of DON make Baffin Bay uniquely suited to investigate its sources and processing, this project will aid in characterizing the role of this largely unstudied form of Nr, which could provide insight and change perceptions about the role of DON in nitrogen dynamics.

Drivers of the dynamics of diazotrophs and denitrifiers in North Sea bottom waters and sediments

PubMed Central

Fan, Haoxin; Bolhuis, Henk; Stal, Lucas J.

2015-01-01

The fixation of dinitrogen (N2) and denitrification are two opposite processes in the nitrogen cycle. The former transfers atmospheric dinitrogen gas into bound nitrogen in the biosphere, while the latter returns this bound nitrogen back to atmospheric dinitrogen. It is unclear whether or not these processes are intimately connected in any microbial ecosystem or that they are spatially and/or temporally separated. Here, we measured seafloor nitrogen fixation and denitrification as well as pelagic nitrogen fixation by using the stable isotope technique. Alongside, we measured the diversity, abundance, and activity of nitrogen-fixing and denitrifying microorganisms at three stations in the southern North Sea. Nitrogen fixation ranged from undetectable to 2.4 nmol N L−1 d−1 and from undetectable to 8.2 nmol N g−1 d−1 in the water column and seafloor, respectively. The highest rates were measured in August at Doggersbank, both for the water column and for the seafloor. Denitrification ranged from 1.7 to 208.8 μmol m−2 d−1 and the highest rates were measured in May at the Oyster Grounds. DNA sequence analysis showed sequences of nifH, a structural gene for nitrogenase, related to sequences from anaerobic sulfur/iron reducers and sulfate reducers. Sequences of the structural gene for nitrite reductase, nirS, were related to environmental clones from marine sediments. Quantitative polymerase chain reaction (qPCR) data revealed the highest abundance of nifH and nirS genes at the Oyster Grounds. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) data revealed the highest nifH expression at Doggersbank and the highest nirS expression at the Oyster Grounds. The distribution of the diazotrophic and denitrifying communities seems to be subject to different selecting factors, leading to spatial and temporal separation of nitrogen fixation and denitrification. These selecting factors include temperature, organic matter availability, and oxygen concentration. PMID:26257718

Causes and effects of a hole. [in Antarctic ozone layer

NASA Technical Reports Server (NTRS)

Margitan, J. J.

1987-01-01

Preliminary results from the U.S. National Ozone Expedition (NOZE) to Antarctica are reviewed. The NOZE ozonesonde measurements showed significant vertical structure in the hole, with 80 percent depletion in some of the 1 km layers but only 20 percent in adjacent layers. The depletion was confined to the 12-20 km region, beginning first at higher altitude and progressing downward. This is strong evidence against the theory that the ozone hole is due to solar activity producing odd nitrogen at high altitudes which is transported downwards, leading to enhanced odd-nitrogen catalytic cycles that destroy ozone. Nitrous oxide data show unusually low concentrations within the polar vortex, which is evidence against the theory that the hole is caused by a purely dynamical mechanism in which rising air motions within the polar vortex lead to reduced column densities of ozone. It is tentatively concluded that a chemical mechanism involving man-made chlorofluorocarbons is the likely cause of ozone depletion in the hole.

Inorganic nitrogen availability after severe stand-replacing fire in the Greater Yellowstone ecosystem

PubMed Central

Turner, Monica G.; Smithwick, Erica A. H.; Metzger, Kristine L.; Tinker, Daniel B.; Romme, William H.

2007-01-01

Understanding ecosystem processes as they relate to wildfire and vegetation dynamics is of growing importance as fire frequency and extent increase throughout the western United States. However, the effects of severe, stand-replacing wildfires are poorly understood. We studied inorganic nitrogen pools and mineralization rates after stand-replacing wildfires in the Greater Yellowstone Ecosystem, Wyoming. After fires that burned in summer 2000, soil ammonium concentration peaked in 2001 (33 mg NH4-N· kgsoil−1); soil nitrate increased subsequently (2.7 mg NO3-N·kgsoil−1 in 2003) but was still low. However, annual net ammonification rates were largely negative from 2001 to 2004, indicating ammonium depletion. Thus, although net nitrification rates were positive, annual net nitrogen mineralization (net ammonification plus net nitrification) remained low. Aboveground net primary production (ANPP) increased from 0.25 to 1.6 Mg·ha−1·yr−1 from 2001 to 2004, but variation in ANPP among stands was not related to net nitrogen mineralization rates. Across a broader temporal gradient (stand age zero to >250 yr), negative rates of net annual ammonification were especially pronounced in the first postfire year. Laboratory incubations using 15N isotope pool dilution revealed that gross production of ammonium was reduced and ammonium consumption greatly exceeded gross production during the initial postfire years. Our results suggest a microbial nitrogen sink for several years after severe, stand-replacing fire, confirming earlier hypotheses about postdisturbance succession and nutrient cycling in cold, fire-dominated coniferous forests. Postfire forests in Yellowstone seem to be highly conservative for nitrogen, and microbial immobilization of ammonium plays a key role during early succession. PMID:17360349

Nitrogen Goes Around

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu, Jianping

Variation in nutrient availability is a common challenge facing living organisms. Analysis of metabolomic and fluxomic responses in cyanobacteria to changes in nitrogen availability has led to the discovery of an ornithine-ammonia cycle.

From Gene Expression to the Earth System: Isotopic Constraints on Nitrogen Cycling Across Scales

NASA Astrophysics Data System (ADS)

Houlton, B. Z.

2015-12-01

A central motivation of the Biogeosciences is to understand the cycling of biologically essential elements over multiple scales of space and time. This charge is vital to basic knowledge of Earth system functioning. It is also relevant to many of the global challenges we face, such as climate change, biodiversity conservation, and the multifaceted role of global fertilizer use in maximizing human health and well-being. Nitrogen is connected to all of these; yet it has been one of the more vexing elements to quantitatively appraise across systems and scales. Here I discuss how research in my group has been exploring the use of natural nitrogen isotope abundance (15N/14N) as a biogeochemical tracer - from the level of gene expression to nitrogen's role in global climate change. First, I present evidence for a positive correlation between the bacterial genes that encode for gaseous nitrogen production (i.e., nirS) and the 15N/14N of soil extractable nitrate pools across an array of terrestrial ecosystems. Second, I demonstrate how these local-scale results fit with our work on ecosystem-scale nitrogen isotope budgets, where we quantify a uniformly small isotope effect (i.e., < 1 per mil) of nitrogen leaching losses from tropical rainforest to highly disturbed arid sites. Third, I present results from our global isotope model, which is based on results from our field investigations, providing a new nitrogen "benchmarking" scheme for global computational models and climate change forecasts. Finally, I move to a new research frontier where we have been developing a technique to measure the nitrogen isotope composition of ancient terrestrial plant compounds (i.e., chlorins) buried in the soil. This research aims to address the response of the nitrogen cycle to glacial-interglacial transitions over millennia, which is beyond the window of experimental testing. Together, this research highlights the utility of nitrogen isotope composition in addressing the myriad scales of this element's interaction with Earth's environment, and supports the working hypothesis that bacterial denitrification is the major fractionating pathway of nitrogen loss from the terrestrial biosphere, much like the global ocean.

3D nitrogen-doped graphene foam with encapsulated germanium/nitrogen-doped graphene yolk-shell nanoarchitecture for high-performance flexible Li-ion battery

PubMed Central

Mo, Runwei; Rooney, David; Sun, Kening; Yang, Hui Ying

2017-01-01

Flexible electrochemical energy storage devices have attracted extensive attention as promising power sources for the ever-growing field of flexible and wearable electronic products. However, the rational design of a novel electrode structure with a good flexibility, high capacity, fast charge–discharge rate and long cycling lifetimes remains a long-standing challenge for developing next-generation flexible energy-storage materials. Herein, we develop a facile and general approach to three-dimensional (3D) interconnected porous nitrogen-doped graphene foam with encapsulated Ge quantum dot/nitrogen-doped graphene yolk-shell nano architecture for high specific reversible capacity (1,220 mAh g−1), long cycling capability (over 96% reversible capacity retention from the second to 1,000 cycles) and ultra-high rate performance (over 800 mAh g−1 at 40 C). This work paves a way to develop the 3D interconnected graphene-based high-capacity electrode material systems, particularly those that suffer from huge volume expansion, for the future development of high-performance flexible energy storage systems. PMID:28051065

Zooming in on aquatic denitrification hot spots

NASA Astrophysics Data System (ADS)

Schultz, Colin

2011-06-01

Inorganic nitrogen is an important resource for marine and aquatic ecosystems, acting as a fertilizer for phytoplankton and aquatic plants. When nitrogen concentrations soar, algae blooms can occur. Subsequently, when the algae blooms die, their decomposition can consume most of the available dissolved oxygen, negatively affecting the ecosystem as a whole. Creeks and streams act as strong controls, regulating downstream nitrogen concentrations, and researchers have been zooming in on hyporheic zones—zones where water flows through the sediment alongside the surface water—as possible hot spots of activity in the nitrogen cycle. Using a stable isotope tracer, Zarnetske et al. tracked the evolution of a nitrogen addition as it flowed through a heavily instrumented gravel bar in Drift Creek, in Oregon. The researchers found that the gravel bar could act as either a source or a sink of inorganic nitrogen, depending on how long it took for the water to make its way through the bar. When the creek water took longer to pass through the hyporheic zone, nitrogen levels were reduced significantly through denitrification, while any water that traveled quickly could have its inorganic nitrogen concentrations increased by nitrification. The authors note that a context-dependent effect of individual hyporheic zones on inorganic nitrogen concentrations could have important implications for attempts to estimate the effects of a watershed on the nitrogen cycle. (Journal of Geophysical Research-Biogeosciences, doi:10.1029/ 2010JG001356, 2011)

The effects of wastewater discharge on the microbiological nitrogen cycle of the lake sediments

NASA Astrophysics Data System (ADS)

Saarenheimo, Jatta; Aalto, Sanni L.; Tiirola, Marja

2016-04-01

Anthropogenic wastewater inputs alter the natural dynamics of nitrogen (N) cycle by providing high concentrations of nitrate and organic matter to the sediment microbes. It can also change the microbial community composition and N removal potential but this is currently not that well studied. To study these aspects, we conducted ecosystem-scale experiment in Lake Keurusselkä, Finland. In the experiment, the wastewater discharge to the recipient lake was optimized with sediment filtration, which increased the surface and retention time of the nitrified wastewater with the sediment. In addition to N transformation rates, which showed that optimization enhanced denitrification, we studied the microbial responses at the sediment. Genetic potential of nitrogen transformation processes, such as denitrification, dissimilatory nitrate reduction to ammonium (DNRA) and nitrification were studied by targeting the functional genes (i.e. nirS, nirK, nosZI, nosZII, nrfA, amoAarchaea and amoAbacteria) with quantitative PCR and digital droplet PCR. In addition, changes in the microbial community composition along the wastewater gradient were examined by using next generation sequencing of the 16S rRNA genes. In line with our hypothesis, the relative abundance of denitrifying genes followed the observed denitrification rates, being highest near the nitrate-rich wastewater discharge. Furthermore the microbial community composition in the discharge point differed clearly from the control and downstream sites, having also the highest numbers of rare OTUs. Abundance of nitrifying bacteria was higher than nitrifying archaea near the waste water discharge, whereas the opposite was seen at the control site. The results indicate that wastewater is not only increasing the denitrification rates, but can also alter the structure and genetic potential microbial communities.

Nano-scale investigation of the association of microbial nitrogen residues with iron (hydr)oxides in a forest soil O-horizon

NASA Astrophysics Data System (ADS)

Keiluweit, Marco; Bougoure, Jeremy J.; Zeglin, Lydia H.; Myrold, David D.; Weber, Peter K.; Pett-Ridge, Jennifer; Kleber, Markus; Nico, Peter S.

2012-10-01

Amino sugars in fungal cell walls (such as chitin) represent an important source of nitrogen (N) in many forest soil ecosystems. Despite the importance of this material in soil nitrogen cycling, comparatively little is known about abiotic and biotic controls on and the timescale of its turnover. Part of the reason for this lack of information is the inaccessibility of these materials to classic bulk extraction methods. To address this issue, we used advanced visualization tools to examine transformation pathways of chitin-rich fungal cell wall residues as they interact with microorganisms, soil organic matter and mineral surfaces. Our goal was to document initial micro-scale dynamics of the incorporation of 13C- and 15N-labeled chitin into fungi-dominated microenvironments in O-horizons of old-growth forest soils. At the end of a 3-week incubation experiment, high-resolution secondary ion mass spectrometry imaging of hyphae-associated soil microstructures revealed a preferential association of 15N with Fe-rich particles. Synchrotron-based scanning transmission X-ray spectromicroscopy (STXM/NEXAFS) of the same samples showed that thin organic coatings on these soil microstructures are enriched in aliphatic C and amide N on Fe (hydr)oxides, suggesting a concentration of microbial lipids and proteins on these surfaces. A possible explanation for the results of our micro-scale investigation of chemical and spatial patterns is that amide N from chitinous fungal cell walls was assimilated by hyphae-associated bacteria, resynthesized into proteinaceous amide N, and subsequently concentrated onto Fe (hydr)oxide surfaces. If confirmed in other soil ecosystems, such rapid association of microbial N with hydroxylated Fe oxide surfaces may have important implications for mechanistic models of microbial cycling of C and N.

Nitrogen controls on ecosystem carbon sequestration: a model implementation and application to Saskatchewan, Canada

USGS Publications Warehouse

Liu, J.; Price, D.T.; Chen, J.M.

2005-01-01

A plant–soil nitrogen (N) cycling model was developed and incorporated into the Integrated BIosphere Simulator (IBIS) of Foley et al. [Foley, J.A., Prentice, I.C., Ramankutty, N., Levis, S., Pollard, D., Sitch, S., Haxeltine, A., 1996. An integrated biosphere model of land surface process, terrestrial carbon balance and vegetation dynamics. Global Biogeochem. Cycles 10, 603–628]. In the N-model, soil mineral N regulates ecosystem carbon (C) fluxes and ecosystem C:N ratios. Net primary productivity (NPP) is controlled by feedbacks from both leaf C:N and soil mineral N. Leaf C:N determines the foliar and canopy photosynthesis rates, while soil mineral N determines the N availability for plant growth and the efficiency of biomass construction. Nitrogen controls on the decomposition of soil organic matter (SOM) are implemented through N immobilization and mineralization separately. The model allows greater SOM mineralization at lower mineral N, and conversely, allows greater N immobilization at higher mineral N. The model's seasonal and inter-annual behaviours are demonstrated. A regional simulation for Saskatchewan, Canada, was performed for the period 1851–2000 at a 10 km × 10 km resolution. Simulated NPP was compared with high-resolution (1 km × 1 km) NPP estimated from remote sensing data using the boreal ecosystem productivity simulator (BEPS) [Liu, J., Chen, J.M., Cihlar, J., Park, W.M., 1997. A process-based boreal ecosystem productivity simulator using remote sensing inputs. Remote Sens. Environ. 44, 81–87]. The agreement between IBIS and BEPS, particularly in NPP spatial variation, was considerably improved when the N controls were introduced into IBIS.

A novel membrane inlet mass spectrometer method to measure ¹⁵NH4₄⁺ for isotope-enrichment experiments in aquatic ecosystems.

PubMed

Yin, Guoyu; Hou, Lijun; Liu, Min; Liu, Zhanfei; Gardner, Wayne S

2014-08-19

Nitrogen (N) pollution in aquatic ecosystems has attracted much attention over the past decades, but the dynamics of this bioreactive element are difficult to measure in aquatic oxygen-transition environments. Nitrogen-transformation experiments often require measurement of (15)N-ammonium ((15)NH4(+)) ratios in small-volume (15)N-enriched samples. Published methods to determine N isotope ratios of dissolved ammonium require large samples and/or costly equipment and effort. We present a novel ("OX/MIMS") method to determine N isotope ratios for (15)NH4(+) in experimental waters previously enriched with (15)N compounds. Dissolved reduced (15)N (dominated by (15)NH4(+)) is oxidized with hypobromite iodine to nitrogen gas ((29)N2 and/or (30)N2) and analyzed by membrane inlet mass spectrometry (MIMS) to quantify (15)NH4(+) concentrations. The N isotope ratios, obtained by comparing the (15)NH4(+) to total ammonium (via autoanalyzer) concentrations, are compared to the ratios of prepared standards. The OX/MIMS method requires only small sample volumes of water (ca. 12 mL) or sediment slurries and is rapid, convenient, accurate, and precise (R(2) = 0.9994, p < 0.0001) over a range of salinities and (15)N/(14)N ratios. It can provide data needed to quantify rates of ammonium regeneration, potential ammonium uptake, and dissimilatory nitrate reduction to ammonium (DNRA). Isotope ratio results agreed closely (R = 0.998, P = 0.001) with those determined independently by isotope ratio mass spectrometry for DNRA measurements or by ammonium isotope retention time shift liquid chromatography for water-column N-cycling experiments. Application of OX/MIMS should simplify experimental approaches and improve understanding of N-cycling rates and fate in a variety of freshwater and marine environments.

Matrix approach to land carbon cycle modeling: A case study with the Community Land Model.

PubMed

Huang, Yuanyuan; Lu, Xingjie; Shi, Zheng; Lawrence, David; Koven, Charles D; Xia, Jianyang; Du, Zhenggang; Kluzek, Erik; Luo, Yiqi

2018-03-01

The terrestrial carbon (C) cycle has been commonly represented by a series of C balance equations to track C influxes into and effluxes out of individual pools in earth system models (ESMs). This representation matches our understanding of C cycle processes well but makes it difficult to track model behaviors. It is also computationally expensive, limiting the ability to conduct comprehensive parametric sensitivity analyses. To overcome these challenges, we have developed a matrix approach, which reorganizes the C balance equations in the original ESM into one matrix equation without changing any modeled C cycle processes and mechanisms. We applied the matrix approach to the Community Land Model (CLM4.5) with vertically-resolved biogeochemistry. The matrix equation exactly reproduces litter and soil organic carbon (SOC) dynamics of the standard CLM4.5 across different spatial-temporal scales. The matrix approach enables effective diagnosis of system properties such as C residence time and attribution of global change impacts to relevant processes. We illustrated, for example, the impacts of CO 2 fertilization on litter and SOC dynamics can be easily decomposed into the relative contributions from C input, allocation of external C into different C pools, nitrogen regulation, altered soil environmental conditions, and vertical mixing along the soil profile. In addition, the matrix tool can accelerate model spin-up, permit thorough parametric sensitivity tests, enable pool-based data assimilation, and facilitate tracking and benchmarking of model behaviors. Overall, the matrix approach can make a broad range of future modeling activities more efficient and effective. © 2017 John Wiley & Sons Ltd.

Microbial drivers of spatial heterogeneity of nitrous oxide pulse dynamics following drought in an experimental tropical rainforest

NASA Astrophysics Data System (ADS)

Young, J. C.; Sengupta, A.; U'Ren, J.; Van Haren, J. L. M.; Meredith, L. K.

2017-12-01

Nitrous oxide (N2O) is a long-lived, potent greenhouse gas with increasing atmospheric concentrations. Soil microbes in agricultural and natural ecosystems are the dominant source of N2O, which involves complex interactions between N-cycling microbes, metabolisms, soil properties, and plants. Tropical rainforests are the largest natural source of N2O, however the microbial and environmental drivers are poorly understood as few studies have been performed in these environments. Thus, there is an urgent need for further research to fill in knowledge gaps regarding tropical N-cycling, and the response of soil microbial communities to changes in precipitation patterns, temperature, nitrogen deposition, and land use. To address this data gap, we performed a whole-forest drought in the tropical rainforest biome in Biosphere 2 (B2) and analyzed connections between soil microbes, forest heterogeneity, and N2O emissions. The B2 rainforest is the hottest tropical rainforest on Earth, and is an important model system for studying the response of tropical forests to warming with controlled experimentation. In this study, we measured microbial community abundance and diversity profiles (16S rRNA and ITS2 amplicon sequencing) along with their association with soil properties (e.g. pH, C, N) during the drought and rewetting at five locations (3 depths), including regions that have been previously characterized with high and low N2O drought pulse dynamics (van Haren et al., 2005). In this study, we present the spatial distribution of soil microbial communities within the rainforest at Biosphere 2 and their correlations with edaphic factors. In particular, we focus on microbial, soil, and plant factors that drive high and low N2O pulse zones. As in the past, we found that N2O emissions were highest in response to rewetting in a zone hypothesized to be rich in nutrients from a nearby sugar palm. We will characterize microbial indicator species and nitrogen cycling genes to better resolve N cycling across the forest. Understanding how N2O formation is mediated by soil microbes in response to drought in tropical rainforests is challenging given the great diversity of microbial communities and metabolisms involved, but is critical for understanding the source of global increases in atmospheric N2O.

Metagenomic Assessment of a Dynamic Microbial Population from Subseafloor Aquifer Fluids in the Cold, Oxygenated Crust

NASA Astrophysics Data System (ADS)

Tully, B. J.; Heidelberg, J. F.; Kraft, B.; Girguis, P. R.; Huber, J. A.

2016-12-01

The oceanic crust contains the largest aquifer on Earth with a volume approximately 2% of the global ocean. Ongoing research at the North Pond (NP) site, west of the Mid-Atlantic Ridge, provides an environment representative of oxygenated crustal aquifers beneath oligotrophic surface waters. Using subseafloor CORK observatories for multiple sampling depths beneath the seafloor, crustal fluids were sampled along the predicted aquifer fluid flow path over a two-year period. DNA was extracted and sequenced for metagenomic analysis from 22 crustal fluid samples, along with the overlying bottom. At broad taxonomic groupings, the aquifer system is highly dynamic over time and space, with shifts in dominant taxa and "blooms" of transient groups that appear at discreet time points and sample depths. We were able to reconstruct 194 high-quality, low-contamination bacterial and archaeal metagenomic-assembled genomes (MAGs) with estimated completeness >50% (429 MAGs >20% complete). Environmental genomes were assigned to phylogenies from the major bacterial phyla, putative novel groups, and poorly sampled phylogenetic groups, including the Marinimicrobia, Candidate Phyla Radiation, and Planctomycetes. Biogeochemically relevant processes were assigned to MAGs, including denitrification, dissimilatory sulfur and hydrogen cycling, and carbon fixation. Collectively, the oxic NP aquifer system represents a diverse, dynamic microbial habitat with the metabolic potential to impact multiple globally relevant biogeochemical cycles, including nitrogen, sulfur, and carbon.

Altered nitrogen balance and decreased urea excretion in male rats fed cafeteria diet are related to arginine availability.

PubMed

Sabater, David; Agnelli, Silvia; Arriarán, Sofía; Fernández-López, José-Antonio; Romero, María del Mar; Alemany, Marià; Remesar, Xavier

2014-01-01

Hyperlipidic diets limit glucose oxidation and favor amino acid preservation, hampering the elimination of excess dietary nitrogen and the catabolic utilization of amino acids. We analyzed whether reduced urea excretion was a consequence of higher NO x ; (nitrite, nitrate, and other derivatives) availability caused by increased nitric oxide production in metabolic syndrome. Rats fed a cafeteria diet for 30 days had a higher intake and accumulation of amino acid nitrogen and lower urea excretion. There were no differences in plasma nitrate or nitrite. NO(x) and creatinine excretion accounted for only a small part of total nitrogen excretion. Rats fed a cafeteria diet had higher plasma levels of glutamine, serine, threonine, glycine, and ornithine when compared with controls, whereas arginine was lower. Liver carbamoyl-phosphate synthetase I activity was higher in cafeteria diet-fed rats, but arginase I was lower. The high carbamoyl-phosphate synthetase activity and ornithine levels suggest activation of the urea cycle in cafeteria diet-fed rats, but low arginine levels point to a block in the urea cycle between ornithine and arginine, thereby preventing the elimination of excess nitrogen as urea. The ultimate consequence of this paradoxical block in the urea cycle seems to be the limitation of arginine production and/or availability.

Altered Nitrogen Balance and Decreased Urea Excretion in Male Rats Fed Cafeteria Diet Are Related to Arginine Availability

PubMed Central

Sabater, David; Arriarán, Sofía; Fernández-López, José-Antonio; Romero, María del Mar; Remesar, Xavier

2014-01-01

Hyperlipidic diets limit glucose oxidation and favor amino acid preservation, hampering the elimination of excess dietary nitrogen and the catabolic utilization of amino acids. We analyzed whether reduced urea excretion was a consequence of higher NOx; (nitrite, nitrate, and other derivatives) availability caused by increased nitric oxide production in metabolic syndrome. Rats fed a cafeteria diet for 30 days had a higher intake and accumulation of amino acid nitrogen and lower urea excretion. There were no differences in plasma nitrate or nitrite. NOx and creatinine excretion accounted for only a small part of total nitrogen excretion. Rats fed a cafeteria diet had higher plasma levels of glutamine, serine, threonine, glycine, and ornithine when compared with controls, whereas arginine was lower. Liver carbamoyl-phosphate synthetase I activity was higher in cafeteria diet-fed rats, but arginase I was lower. The high carbamoyl-phosphate synthetase activity and ornithine levels suggest activation of the urea cycle in cafeteria diet-fed rats, but low arginine levels point to a block in the urea cycle between ornithine and arginine, thereby preventing the elimination of excess nitrogen as urea. The ultimate consequence of this paradoxical block in the urea cycle seems to be the limitation of arginine production and/or availability. PMID:24707502

Long-term records reveal decoupling of nitrogen and phosphorus cycles in a large, urban lake in response to an extreme rainfall event

NASA Astrophysics Data System (ADS)

Corman, J. R.; Loken, L. C.; Oliver, S. K.; Collins, S.; Butitta, V.; Stanley, E. H.

2017-12-01

Extreme events can play powerful roles in shifting ecosystem processes. In lakes, heavy rainfall can transport large amounts of particulates and dissolved nutrients into the water column and, potentially, alter biogeochemical cycling. However, the impacts of extreme rainfall events are often difficult to study due to a lack of long-term records. In this paper, we combine daily discharge records with long-term lake water quality information collected by the North Temperate Lakes Long-Term Ecological Research (NTL LTER) site to investigate the impacts of extreme events on nutrient cycling in lakes. We focus on Lake Mendota, an urban lake within the Yahara River Watershed in Madison, Wisconsin, USA, where nutrient data are available at least seasonally from 1995 - present. In June 2008, precipitation amounts in the Yahara watershed were 400% above normal values, triggering the largest discharge event on record for the 40 years of monitoring at the streamgage station; hence, we are able to compare water quality records before and after this event as a case study of how extreme rain events couple or decouple lake nutrient cycling. Following the extreme event, the lake-wide mass of nitrogen and phosphorus increased in the summer of 2008 by 35% and 21%, respectively, shifting lake stoichiometry by increasing N:P ratios (Figure 1). Nitrogen concentrations remained elevated longer than phosphorus, suggesting (1) that nitrogen inputs into the lake were sustained longer than phosphorus (i.e., a "smear" versus "pulse" loading of nitrogen versus phosphorus, respectively, in response to the extreme event) and/or (2) that in-lake biogeochemical processing was more efficient at removing phosphorus compared to nitrogen. While groundwater loading data are currently unavailable to test the former hypothesis, preliminary data from surficial nitrogen and phosphorus loading to Lake Mendota (available for 2011 - 2013) suggest that nitrogen removal efficiency is less than phosphorus, supporting the latter hypothesis. As climate change is expected to increase the frequency of extreme events, continued monitoring of lakes is needed to understand biogeochemical responses and when and how water quality threats may occur.

Desert dust and anthropogenic aerosol interactions in the Community Climate System Model coupled-carbon-climate model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mahowald, Natalie; Rothenberg, D.; Lindsay, Keith

2011-02-01

Coupled-carbon-climate simulations are an essential tool for predicting the impact of human activity onto the climate and biogeochemistry. Here we incorporate prognostic desert dust and anthropogenic aerosols into the CCSM3.1 coupled carbon-climate model and explore the resulting interactions with climate and biogeochemical dynamics through a series of transient anthropogenic simulations (20th and 21st centuries) and sensitivity studies. The inclusion of prognostic aerosols into this model has a small net global cooling effect on climate but does not significantly impact the globally averaged carbon cycle; we argue that this is likely to be because the CCSM3.1 model has a small climatemore » feedback onto the carbon cycle. We propose a mechanism for including desert dust and anthropogenic aerosols into a simple carbon-climate feedback analysis to explain the results of our and previous studies. Inclusion of aerosols has statistically significant impacts on regional climate and biogeochemistry, in particular through the effects on the ocean nitrogen cycle and primary productivity of altered iron inputs from desert dust deposition.« less

Modelling Pseudocalanus elongatus stage-structured population dynamics embedded in a water column ecosystem model for the northern North Sea

NASA Astrophysics Data System (ADS)

Moll, Andreas; Stegert, Christoph

2007-01-01

This paper outlines an approach to couple a structured zooplankton population model with state variables for eggs, nauplii, two copepodites stages and adults adapted to Pseudocalanus elongatus into the complex marine ecosystem model ECOHAM2 with 13 state variables resolving the carbon and nitrogen cycle. Different temperature and food scenarios derived from laboratory culture studies were examined to improve the process parameterisation for copepod stage dependent development processes. To study annual cycles under realistic weather and hydrographic conditions, the coupled ecosystem-zooplankton model is applied to a water column in the northern North Sea. The main ecosystem state variables were validated against observed monthly mean values. Then vertical profiles of selected state variables were compared to the physical forcing to study differences between zooplankton as one biomass state variable or partitioned into five population state variables. Simulated generation times are more affected by temperature than food conditions except during the spring phytoplankton bloom. Up to six generations within the annual cycle can be discerned in the simulation.

Nitrogen dynamics in a highly urbanized coastal area of western Japan: impact of sewage-derived loads

NASA Astrophysics Data System (ADS)

Saito, Mitsuyo; Onodera, Shin-ichi; Jin, Guangzhe; Shimizu, Yuta; Taniguchi, Masanobu

2018-12-01

In this study, we examined the nitrogen dynamics of a highly urbanized coastal area, focusing on the impacts of sewage-derived nitrogen. High levels of dissolved inorganic nitrogen were detected in seawater near treated sewage effluent (TSE) discharge points before decreasing in the offshore direction, suggesting that the impact zone of sewage effluent is about 1-2 km from the discharge point. The stable isotope ratios of nitrate and particulate organic nitrogen suggest nitrogen uptake by phytoplankton as well as dilution by offshore seawater, which contributed to a decrease in sewage-derived nitrogen levels. However, the extent of the impact zone was controlled by tidal variations and differences in temperature between the TSE and seawater. Our results also identify nitrogen transport processes, through exchange between seawater and sediment pore water, as an additional important source of nitrogen in the study area.

Periodic organosilica hollow nanospheres as anode materials for lithium ion rechargeable batteries

NASA Astrophysics Data System (ADS)

Sasidharan, Manickam; Nakashima, Kenichi; Gunawardhana, Nanda; Yokoi, Toshiyuki; Ito, Masanori; Inoue, Masamichi; Yusa, Shin-Ichi; Yoshio, Masaki; Tatsumi, Takashi

2011-11-01

Polymeric micelles with core-shell-corona architecture have been found to be the efficient colloidal templates for synthesis of periodic organosilica hollow nanospheres over a broad pH range from acidic to alkaline media. In alkaline medium, poly (styrene-b-[3-(methacryloylamino)propyl] trimethylammonium chloride-b-ethylene oxide) (PS-PMAPTAC-PEO) micelles yield benzene-silica hollow nanospheres with molecular scale periodicity of benzene groups in the shell domain of hollow particles. Whereas, an acidic medium (pH 4) produces diverse hollow particles with benzene, ethylene, and a mixture of ethylene and dipropyldisulfide bridging functionalities using poly(styrene-b-2-vinyl pyridine-b-ethylene oxide) (PS-PVP-PEO) micelles. These hollow particles were thoroughly characterized by powder X-ray diffraction (XRD), dynamic light scattering (DLS), thermogravimetric analysis (TG/DTA), Fourier transformation infrared (FTIR) spectroscopy, transmission electron microscopy (TEM), magic angle spinning-nuclear magnetic resonance (29Si MAS NMR and 13CP-MAS NMR), Raman spectroscopy, and nitrogen adsorption/desorption analyses. The benzene-silica hollow nanospheres with molecular scale periodicity in the shell domain exhibit higher cycling performance of up to 300 cycles in lithium ion rechargeable batteries compared with micron-sized dense benzene-silica particles.Polymeric micelles with core-shell-corona architecture have been found to be the efficient colloidal templates for synthesis of periodic organosilica hollow nanospheres over a broad pH range from acidic to alkaline media. In alkaline medium, poly (styrene-b-[3-(methacryloylamino)propyl] trimethylammonium chloride-b-ethylene oxide) (PS-PMAPTAC-PEO) micelles yield benzene-silica hollow nanospheres with molecular scale periodicity of benzene groups in the shell domain of hollow particles. Whereas, an acidic medium (pH 4) produces diverse hollow particles with benzene, ethylene, and a mixture of ethylene and dipropyldisulfide bridging functionalities using poly(styrene-b-2-vinyl pyridine-b-ethylene oxide) (PS-PVP-PEO) micelles. These hollow particles were thoroughly characterized by powder X-ray diffraction (XRD), dynamic light scattering (DLS), thermogravimetric analysis (TG/DTA), Fourier transformation infrared (FTIR) spectroscopy, transmission electron microscopy (TEM), magic angle spinning-nuclear magnetic resonance (29Si MAS NMR and 13CP-MAS NMR), Raman spectroscopy, and nitrogen adsorption/desorption analyses. The benzene-silica hollow nanospheres with molecular scale periodicity in the shell domain exhibit higher cycling performance of up to 300 cycles in lithium ion rechargeable batteries compared with micron-sized dense benzene-silica particles. Electronic supplementary information (ESI) available: FTIR, Raman spectral data, additional TEM pictures, N2 adsorption and physical characteristics of hollow particles data, and cycling performance of dense silica particles. See DOI: 10.1039/c1nr10804b

Abiotic gas formation drives nitrogen loss from a desert ecosystem.

PubMed

McCalley, Carmody K; Sparks, Jed P

2009-11-06

In arid environments such as deserts, nitrogen is often the most limiting nutrient for biological activity. The majority of the ecosystem nitrogen flux is typically thought to be driven by production and loss of reactive nitrogen species by microorganisms in the soil. We found that high soil-surface temperatures (greater than 50 degrees C), driven by solar radiation, are the primary cause of nitrogen loss in Mojave Desert soils. This abiotic pathway not only enables the balancing of arid ecosystem nitrogen budgets, but also changes our view of global nitrogen cycling and the predicted impact of climate change and increased temperatures on nitrogen bioavailability.

Host and tissue variations overshadow the response of boreal moss-associated fungal communities to increased nitrogen load.

PubMed

Davey, Marie L; Skogen, Marte J; Heegaard, Einar; Halvorsen, Rune; Kauserud, Håvard; Ohlson, Mikael

2017-01-01

Human activity has more than doubled the amount of nitrogen entering the global nitrogen cycle, and the boreal forest biome is a nitrogen-limited ecosystem sensitive to nitrogen load perturbation. Although bryophyte-associated microbes contribute significantly to boreal forest ecosystem function, particularly in carbon and nitrogen cycling, little is known about their responses to anthropogenic global change. Amplicon pyrosequencing of the ITS2 region of rDNA was used to investigate how fungal communities associated with three bryophyte species responded to increased nitrogen loads in a long-term fertilization experiment in a boreal Picea abies forest in southern Norway. Overall, OTU richness, community composition and the relative abundance of specific ecological guilds were primarily influenced by host species identity and tissue type. Although not the primary factor affecting fungal communities, nitrogen addition did impact the abundance of specific guilds of fungi and the resulting overall community composition. Increased nitrogen loads decreased ectomycorrhizal abundance, with Amphinema, Cortinarius, Russula and Tylospora OTUs responding negatively to fertilization. Pathogen abundance increased with fertilization, particularly in the moss pathogen Eocronartium. Saprophytic fungi were both positively and negatively impacted by the nitrogen addition, indicating a complex community level response. The overshadowing of the effects of increased nitrogen loads by variation related to host and tissue type highlights the complexity of bryophyte-associated microbial communities and the intricate nature of their responses to anthropogenic global change. © 2016 John Wiley & Sons Ltd.

An investigation of the solar cycle response of odd-nitrogen in the thermosphere

NASA Technical Reports Server (NTRS)

Rusch, David W.; Solomon, Stanley C.

1992-01-01

This annual report covers the first year of funding for the study of the solar cycle variations of odd-nitrogen (N((sup 2)D), N((sup 4)S), NO) in the Earth's thermosphere. The study uses the extensive data base generated by the Atmosphere Explorer (AE) satellites, and the Solar Mesosphere Explorer Satellite. The AE data are being used, for the first time, to define the solar variability effect on the odd-nitrogen species through analysis of the emissions at 520 nano-m from N((sup 2)D) and the emission from O(+)((sup 2)P). Additional AE neutral and ion density data are used to help define and quantify the physical processes controlling the variations. The results from the airglow study will be used in the next two years of this study to explain the solar cycle changes in NO measured by the Solar Mesosphere Explorer.

Issues in system boundary definition for substance flow analysis: the case of nitrogen cycle management in Catalonia.

PubMed

Bartrolí, J; Martin, M J; Rigola, M

2001-10-16

The great complexity of the nitrogen cycle, including anthropogenic contributions, makes it necessary to carry out local studies, which allow us to identify the specific cause-effect links in a particular society. Models of local societies that are based on methods such as Substance Flow Analysis (SFA), which study and characterise the performance of metabolic exchanges between human society and the environment, are a useful tools for directing local policy towards sustainable management of the nitrogen cycle. In this paper, the selection of geographical boundaries for SFA application is discussed. Data availability and accuracy, and the possibility of linking the results with instructions for decision making, are critical aspects for proper scale selection. The experience obtained in the construction of the model for Catalonia is used to draw attention to the difficulties found in regional studies.

Ecological issues related to N deposition to natural ecosystems: research needs.

PubMed

Adams, Mary Beth

2003-06-01

There has and continues to be concern about the effects of elevated nitrogen (N) deposition on natural ecosystems. In this paper, research on natural ecosystems, including wetlands, heathlands, grasslands, steppe, naturally regenerated forests and deserts, is evaluated to determine what is known about nitrogen cycling in these ecosystems, the effects of elevated nitrogen on them and to identify research gaps. Aquatic ecosystems are not included in this review, except as they are part of the larger ecosystem. Research needs fall into several categories: (1) improved understanding and quantification of the N cycle, particularly relatively unstudied processes such as dry deposition, N fixation and decomposition/mineralization; (2) carbon cycling as affected by increased N deposition; (3) effects on arid ecosystems and other "neglected" ecosystems; (4) effects on complex ecosystems and interactions with other pollutants; (5) indicators and assessment tools for natural ecosystems.

Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program.

PubMed

Klotz, Alexander; Georg, Jens; Bučinská, Lenka; Watanabe, Satoru; Reimann, Viktoria; Januszewski, Witold; Sobotka, Roman; Jendrossek, Dieter; Hess, Wolfgang R; Forchhammer, Karl

2016-11-07

The molecular and physiological mechanisms involved in the transition of microbial cells from a resting state to the active vegetative state are critically relevant for solving problems in fields ranging from microbial ecology to infection microbiology. Cyanobacteria that cannot fix nitrogen are able to survive prolonged periods of nitrogen starvation as chlorotic cells in a dormant state. When provided with a usable nitrogen source, these cells re-green within 48 hr and return to vegetative growth. Here we investigated the resuscitation of chlorotic Synechocystis sp. PCC 6803 cells at the physiological and molecular levels with the aim of understanding the awakening process of a dormant bacterium. Almost immediately upon nitrate addition, the cells initiated a highly organized resuscitation program. In the first phase, they suppressed any residual photosynthetic activity and activated respiration to gain energy from glycogen catabolism. Concomitantly, they restored the entire translational apparatus, ATP synthesis, and nitrate assimilation. After only 12-16 hr, the cells re-activated the synthesis of the photosynthetic apparatus and prepared for metabolic re-wiring toward photosynthesis. When the cells reached full photosynthetic capacity after ∼48 hr, they resumed cell division and entered the vegetative cell cycle. An analysis of the transcriptional dynamics during the resuscitation process revealed a perfect match to the observed physiological processes, and it suggested that non-coding RNAs play a major regulatory role during the lifestyle switch in awakening cells. This genetically encoded program ensures rapid colonization of habitats in which nitrogen starvation imposes a recurring growth limitation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Evidence for indigenous nitrogen in sedimentary and aeolian deposits from the Curiosity rover investigations at Gale crater, Mars

PubMed Central

Stern, Jennifer C.; Sutter, Brad; Freissinet, Caroline; Navarro-González, Rafael; McKay, Christopher P.; Archer, P. Douglas; Buch, Arnaud; Brunner, Anna E.; Coll, Patrice; Eigenbrode, Jennifer L.; Fairen, Alberto G.; Franz, Heather B.; Glavin, Daniel P.; Kashyap, Srishti; McAdam, Amy C.; Ming, Douglas W.; Steele, Andrew; Szopa, Cyril; Wray, James J.; Martín-Torres, F. Javier; Zorzano, Maria-Paz; Conrad, Pamela G.; Mahaffy, Paul R.; Kemppinen, Osku; Bridges, Nathan; Johnson, Jeffrey R.; Minitti, Michelle; Cremers, David; Bell, James F.; Edgar, Lauren; Farmer, Jack; Godber, Austin; Wadhwa, Meenakshi; Wellington, Danika; McEwan, Ian; Newman, Claire; Richardson, Mark; Charpentier, Antoine; Peret, Laurent; King, Penelope; Blank, Jennifer; Weigle, Gerald; Schmidt, Mariek; Li, Shuai; Milliken, Ralph; Robertson, Kevin; Sun, Vivian; Baker, Michael; Edwards, Christopher; Ehlmann, Bethany; Farley, Kenneth; Griffes, Jennifer; Grotzinger, John; Miller, Hayden; Newcombe, Megan; Pilorget, Cedric; Rice, Melissa; Siebach, Kirsten; Stack, Katie; Stolper, Edward; Brunet, Claude; Hipkin, Victoria; Léveillé, Richard; Marchand, Geneviève; Sánchez, Pablo Sobrón; Favot, Laurent; Cody, George; Steele, Andrew; Flückiger, Lorenzo; Lees, David; Nefian, Ara; Martin, Mildred; Gailhanou, Marc; Westall, Frances; Israël, Guy; Agard, Christophe; Baroukh, Julien; Donny, Christophe; Gaboriaud, Alain; Guillemot, Philippe; Lafaille, Vivian; Lorigny, Eric; Paillet, Alexis; Pérez, René; Saccoccio, Muriel; Yana, Charles; Armiens-Aparicio, Carlos; Rodríguez, Javier Caride; Blázquez, Isaías Carrasco; Gómez, Felipe Gómez; Gómez-Elvira, Javier; Hettrich, Sebastian; Malvitte, Alain Lepinette; Jiménez, Mercedes Marín; Martínez-Frías, Jesús; Martín-Soler, Javier; - Torres, F. Javier Martín; Jurado, Antonio Molina; Mora-Sotomayor, Luis; Caro, Guillermo Muñoz; López, Sara Navarro; Peinado-González, Verónica; Pla-García, Jorge; Manfredi, José Antonio Rodriguez; Romeral-Planelló, Julio José; Fuentes, Sara Alejandra Sans; Martinez, Eduardo Sebastian; Redondo, Josefina Torres; Urqui-O'Callaghan, Roser; Mier, María-Paz Zorzano; Chipera, Steve; Lacour, Jean-Luc; Mauchien, Patrick; Sirven, Jean-Baptiste; Manning, Heidi; Fairén, Alberto; Hayes, Alexander; Joseph, Jonathan; Squyres, Steven; Sullivan, Robert; Thomas, Peter; Dupont, Audrey; Lundberg, Angela; Melikechi, Noureddine; Mezzacappa, Alissa; DeMarines, Julia; Grinspoon, David; Reitz, Günther; Prats, Benito; Atlaskin, Evgeny; Genzer, Maria; Harri, Ari-Matti; Haukka, Harri; Kahanpää, Henrik; Kauhanen, Janne; Kemppinen, Osku; Paton, Mark; Polkko, Jouni; Schmidt, Walter; Siili, Tero; Fabre, Cécile; Wray, James; Wilhelm, Mary Beth; Poitrasson, Franck; Patel, Kiran; Gorevan, Stephen; Indyk, Stephen; Paulsen, Gale; Gupta, Sanjeev; Bish, David; Schieber, Juergen; Gondet, Brigitte; Langevin, Yves; Geffroy, Claude; Baratoux, David; Berger, Gilles; Cros, Alain; d’Uston, Claude; Forni, Olivier; Gasnault, Olivier; Lasue, Jérémie; Lee, Qiu-Mei; Maurice, Sylvestre; Meslin, Pierre-Yves; Pallier, Etienne; Parot, Yann; Pinet, Patrick; Schröder, Susanne; Toplis, Mike; Lewin, Éric; Brunner, Will; Heydari, Ezat; Achilles, Cherie; Oehler, Dorothy; Sutter, Brad; Cabane, Michel; Coscia, David; Israël, Guy; Szopa, Cyril; Dromart, Gilles; Robert, François; Sautter, Violaine; Le Mouélic, Stéphane; Mangold, Nicolas; Nachon, Marion; Buch, Arnaud; Stalport, Fabien; Coll, Patrice; François, Pascaline; Raulin, François; Teinturier, Samuel; Cameron, James; Clegg, Sam; Cousin, Agnès; DeLapp, Dorothea; Dingler, Robert; Jackson, Ryan Steele; Johnstone, Stephen; Lanza, Nina; Little, Cynthia; Nelson, Tony; Wiens, Roger C.; Williams, Richard B.; Jones, Andrea; Kirkland, Laurel; Treiman, Allan; Baker, Burt; Cantor, Bruce; Caplinger, Michael; Davis, Scott; Duston, Brian; Edgett, Kenneth; Fay, Donald; Hardgrove, Craig; Harker, David; Herrera, Paul; Jensen, Elsa; Kennedy, Megan R.; Krezoski, Gillian; Krysak, Daniel; Lipkaman, Leslie; Malin, Michael; McCartney, Elaina; McNair, Sean; Nixon, Brian; Posiolova, Liliya; Ravine, Michael; Salamon, Andrew; Saper, Lee; Stoiber, Kevin; Supulver, Kimberley; Van Beek, Jason; Van Beek, Tessa; Zimdar, Robert; French, Katherine Louise; Iagnemma, Karl; Miller, Kristen; Summons, Roger; Goesmann, Fred; Goetz, Walter; Hviid, Stubbe; Johnson, Micah; Lefavor, Matthew; Lyness, Eric; Breves, Elly; Dyar, M. Darby; Fassett, Caleb; Blake, David F.; Bristow, Thomas; DesMarais, David; Edwards, Laurence; Haberle, Robert; Hoehler, Tori; Hollingsworth, Jeff; Kahre, Melinda; Keely, Leslie; McKay, Christopher; Wilhelm, Mary Beth; Bleacher, Lora; Brinckerhoff, William; Choi, David; Conrad, Pamela; Dworkin, Jason P.; Eigenbrode, Jennifer; Floyd, Melissa; Freissinet, Caroline; Garvin, James; Glavin, Daniel; Harpold, Daniel; Jones, Andrea; Mahaffy, Paul; Martin, David K.; McAdam, Amy; Pavlov, Alexander; Raaen, Eric; Smith, Michael D.; Stern, Jennifer; Tan, Florence; Trainer, Melissa; Meyer, Michael; Posner, Arik; Voytek, Mary; Anderson, Robert C; Aubrey, Andrew; Beegle, Luther W.; Behar, Alberto; Blaney, Diana; Brinza, David; Calef, Fred; Christensen, Lance; Crisp, Joy A.; DeFlores, Lauren; Ehlmann, Bethany; Feldman, Jason; Feldman, Sabrina; Flesch, Gregory; Hurowitz, Joel; Jun, Insoo; Keymeulen, Didier; Maki, Justin; Mischna, Michael; Morookian, John Michael; Parker, Timothy; Pavri, Betina; Schoppers, Marcel; Sengstacken, Aaron; Simmonds, John J.; Spanovich, Nicole; Juarez, Manuel de la Torre; Vasavada, Ashwin R.; Webster, Christopher R.; Yen, Albert; Archer, Paul Douglas; Cucinotta, Francis; Jones, John H.; Ming, Douglas; Morris, Richard V.; Niles, Paul; Rampe, Elizabeth; Nolan, Thomas; Fisk, Martin; Radziemski, Leon; Barraclough, Bruce; Bender, Steve; Berman, Daniel; Dobrea, Eldar Noe; Tokar, Robert; Vaniman, David; Williams, Rebecca M. E.; Yingst, Aileen; Lewis, Kevin; Leshin, Laurie; Cleghorn, Timothy; Huntress, Wesley; Manhès, Gérard; Hudgins, Judy; Olson, Timothy; Stewart, Noel; Sarrazin, Philippe; Grant, John; Vicenzi, Edward; Wilson, Sharon A.; Bullock, Mark; Ehresmann, Bent; Hamilton, Victoria; Hassler, Donald; Peterson, Joseph; Rafkin, Scot; Zeitlin, Cary; Fedosov, Fedor; Golovin, Dmitry; Karpushkina, Natalya; Kozyrev, Alexander; Litvak, Maxim; Malakhov, Alexey; Mitrofanov, Igor; Mokrousov, Maxim; Nikiforov, Sergey; Prokhorov, Vasily; Sanin, Anton; Tretyakov, Vladislav; Varenikov, Alexey; Vostrukhin, Andrey; Kuzmin, Ruslan; Clark, Benton; Wolff, Michael; McLennan, Scott; Botta, Oliver; Drake, Darrell; Bean, Keri; Lemmon, Mark; Schwenzer, Susanne P.; Anderson, Ryan B.; Herkenhoff, Kenneth; Lee, Ella Mae; Sucharski, Robert; Hernández, Miguel Ángel de Pablo; Ávalos, Juan José Blanco; Ramos, Miguel; Kim, Myung-Hee; Malespin, Charles; Plante, Ianik; Muller, Jan-Peter; Navarro-González, Rafael; Ewing, Ryan; Boynton, William; Downs, Robert; Fitzgibbon, Mike; Harshman, Karl; Morrison, Shaunna; Dietrich, William; Kortmann, Onno; Palucis, Marisa; Sumner, Dawn Y.; Williams, Amy; Lugmair, Günter; Wilson, Michael A.; Rubin, David; Jakosky, Bruce; Balic-Zunic, Tonci; Frydenvang, Jens; Jensen, Jaqueline Kløvgaard; Kinch, Kjartan; Koefoed, Asmus; Madsen, Morten Bo; Stipp, Susan Louise Svane; Boyd, Nick; Campbell, John L.; Gellert, Ralf; Perrett, Glynis; Pradler, Irina; VanBommel, Scott; Jacob, Samantha; Owen, Tobias; Rowland, Scott; Atlaskin, Evgeny; Savijärvi, Hannu; Boehm, Eckart; Böttcher, Stephan; Burmeister, Sönke; Guo, Jingnan; Köhler, Jan; García, César Martín; Mueller-Mellin, Reinhold; Wimmer-Schweingruber, Robert; Bridges, John C.; McConnochie, Timothy; Benna, Mehdi; Franz, Heather; Bower, Hannah; Brunner, Anna; Blau, Hannah; Boucher, Thomas; Carmosino, Marco; Atreya, Sushil; Elliott, Harvey; Halleaux, Douglas; Rennó, Nilton; Wong, Michael; Pepin, Robert; Elliott, Beverley; Spray, John; Thompson, Lucy; Gordon, Suzanne; Newsom, Horton; Ollila, Ann; Williams, Joshua; Vasconcelos, Paulo; Bentz, Jennifer; Nealson, Kenneth; Popa, Radu; Kah, Linda C.; Moersch, Jeffrey; Tate, Christopher; Day, Mackenzie; Kocurek, Gary; Hallet, Bernard; Sletten, Ronald; Francis, Raymond; McCullough, Emily; Cloutis, Ed; ten Kate, Inge Loes; Kuzmin, Ruslan; Arvidson, Raymond; Fraeman, Abigail; Scholes, Daniel; Slavney, Susan; Stein, Thomas; Ward, Jennifer; Berger, Jeffrey; Moores, John E.

2015-01-01

The Sample Analysis at Mars (SAM) investigation on the Mars Science Laboratory (MSL) Curiosity rover has detected oxidized nitrogen-bearing compounds during pyrolysis of scooped aeolian sediments and drilled sedimentary deposits within Gale crater. Total N concentrations ranged from 20 to 250 nmol N per sample. After subtraction of known N sources in SAM, our results support the equivalent of 110–300 ppm of nitrate in the Rocknest (RN) aeolian samples, and 70–260 and 330–1,100 ppm nitrate in John Klein (JK) and Cumberland (CB) mudstone deposits, respectively. Discovery of indigenous martian nitrogen in Mars surface materials has important implications for habitability and, specifically, for the potential evolution of a nitrogen cycle at some point in martian history. The detection of nitrate in both wind-drifted fines (RN) and in mudstone (JK, CB) is likely a result of N2 fixation to nitrate generated by thermal shock from impact or volcanic plume lightning on ancient Mars. Fixed nitrogen could have facilitated the development of a primitive nitrogen cycle on the surface of ancient Mars, potentially providing a biochemically accessible source of nitrogen. PMID:25831544

Evidence for indigenous nitrogen in sedimentary and aeolian deposits from the Curiosity rover investigations at Gale crater, Mars.

PubMed

Stern, Jennifer C; Sutter, Brad; Freissinet, Caroline; Navarro-González, Rafael; McKay, Christopher P; Archer, P Douglas; Buch, Arnaud; Brunner, Anna E; Coll, Patrice; Eigenbrode, Jennifer L; Fairen, Alberto G; Franz, Heather B; Glavin, Daniel P; Kashyap, Srishti; McAdam, Amy C; Ming, Douglas W; Steele, Andrew; Szopa, Cyril; Wray, James J; Martín-Torres, F Javier; Zorzano, Maria-Paz; Conrad, Pamela G; Mahaffy, Paul R

2015-04-07

The Sample Analysis at Mars (SAM) investigation on the Mars Science Laboratory (MSL) Curiosity rover has detected oxidized nitrogen-bearing compounds during pyrolysis of scooped aeolian sediments and drilled sedimentary deposits within Gale crater. Total N concentrations ranged from 20 to 250 nmol N per sample. After subtraction of known N sources in SAM, our results support the equivalent of 110-300 ppm of nitrate in the Rocknest (RN) aeolian samples, and 70-260 and 330-1,100 ppm nitrate in John Klein (JK) and Cumberland (CB) mudstone deposits, respectively. Discovery of indigenous martian nitrogen in Mars surface materials has important implications for habitability and, specifically, for the potential evolution of a nitrogen cycle at some point in martian history. The detection of nitrate in both wind-drifted fines (RN) and in mudstone (JK, CB) is likely a result of N2 fixation to nitrate generated by thermal shock from impact or volcanic plume lightning on ancient Mars. Fixed nitrogen could have facilitated the development of a primitive nitrogen cycle on the surface of ancient Mars, potentially providing a biochemically accessible source of nitrogen.

Global Coupled Carbon and Nitrogen Models: Successes, Failures and What next?

NASA Astrophysics Data System (ADS)

Holland, E. A.

2011-12-01

Over the last few years, there has been a great deal of progress in modeling coupled terrestrial global carbon and nitrogen cycles and their roles in Earth System models. The collection of recent models provides some surprising results and insights. A critical question for Earth system models is: How do the coupled C/N model results impact atmospheric carbon dioxide concentrations compared to carbon only models? Some coupled models predict increased atmospheric carbon dioxide concentrations, the result expected from nitrogen-limited photosynthesis uptake of carbon dioxide, while others predict little change or decreased carbon dioxide uptake with a coupled carbon and nitrogen cycle. With this range of impacts for climate critical atmospheric carbon dioxide concentrations, there is clearly a need for additional comparison of measurements and models. Randerson et al.'s CLAMP study provided important constraints and comparison for primarily for aboveground carbon uptake. However, nitrogen supply is largely determined decomposition and soil processes. I will present comparisons of NCAR's CESM results with soil and litter carbon and nitrogen fluxes and standing stocks. These belowground data sets of both carbon and nitrogen provide important benchmarks for coupled C/N models.

Simulation of Soil-Plant Nitrogen Interactions for Educational Purposes.

ERIC Educational Resources Information Center

Huck, M. G.; Hoeft, R. G.

1994-01-01

Describes a computer model characterizing the balance of soil-plant Nitrogen that allows students to see the likely consequences of different biological and weather-related parameters. Proposes three uses for the model: (1) orienting beginning students to understand the soil Nitrogen cycle; (2) providing information for advanced students; and (3)…

Porous nitrogen-doped carbon derived from silk fibroin protein encapsulating sulfur as a superior cathode material for high-performance lithium-sulfur batteries.

PubMed

Zhang, Jiawei; Cai, Yurong; Zhong, Qiwei; Lai, Dongzhi; Yao, Juming

2015-11-14

The features of a carbon substrate are crucial for the electrochemical performance of lithium-sulfur (Li-S) batteries. Nitrogen doping of carbon materials is assumed to play an important role in sulfur immobilisation. In this study, natural silk fibroin protein is used as a precursor of nitrogen-rich carbon to fabricate a novel, porous, nitrogen-doped carbon material through facile carbonisation and activation. Porous carbon, with a reversible capacity of 815 mA h g(-1) at 0.2 C after 60 cycles, serves as the cathode material in Li-S batteries. Porous carbon retains a reversible capacity of 567 mA h g(-1), which corresponds to a capacity retention of 98% at 1 C after 200 cycles. The promising electrochemical performance of porous carbon is attributed to its mesoporous structure, high specific surface area and nitrogen doping into the carbon skeleton. This study provides a general strategy to synthesise nitrogen-doped carbons with a high specific surface area, which is crucial to improve the energy density and electrochemical performance of Li-S batteries.

A coastal three-dimensional water quality model of nitrogen in Jiaozhou Bay linking field experiments with modelling.

PubMed

Lu, Dongliang; Li, Keqiang; Liang, Shengkang; Lin, Guohong; Wang, Xiulin

2017-01-15

With anthropogenic changes, the structure and quantity of nitrogen nutrients have changed in coastal ocean, which has dramatically influenced the water quality. Water quality modeling can contribute to the necessary scientific grounding of coastal management. In this paper, some of the dynamic functions and parameters of nitrogen were calibrated based on coastal field experiments covering the dynamic nitrogen processes in Jiaozhou Bay (JZB), including phytoplankton growth, respiration, and mortality; particulate nitrogen degradation; and dissolved organic nitrogen remineralization. The results of the field experiments and box model simulations showed good agreement (RSD=20%±2% and SI=0.77±0.04). A three-dimensional water quality model of nitrogen (3DWQMN) in JZB was improved and the dynamic parameters were updated according to field experiments. The 3DWQMN was validated based on observed data from 2012 to 2013, with good agreement (RSD=27±4%, SI=0.68±0.06, and K=0.48±0.04), which testifies to the model's credibility. Copyright © 2016 Elsevier Ltd. All rights reserved.

The effect of nitrogen on the cycling performance in thin-film Si{sub 1-x}N{sub x} anode

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahn, Donggi; Kim, Chunjoong; Lee, Joon-Gon

2008-09-15

The effects of nitrogen on the electrochemical properties of silicon-nitrogen (Si{sub 1-x}N{sub x}) thin films were examined in terms of their initial capacities and cycling properties. In particular, Si{sub 0.76}N{sub 0.24} thin films showed negligible initial capacity but an abrupt capacity increase to {approx}2300 mA h/g after {approx}650 cycles. The capacity of pure Si thin films was deteriorated to {approx}20% of the initial level after 200 cycles between 0.02 and 1.2 V at 0.5 C (1 C=4200 mA/g), whereas the Si{sub 0.76}N{sub 0.24} thin films exhibited excellent cycle-life performance after {approx}650 cycles. In addition, the Si{sub 0.76}N{sub 0.24} thin filmsmore » at 50 deg. C showed an abrupt capacity increase at an earlier stage of only {approx}30 cycles. The abnormal electrochemical behaviors in the Si{sub 0.76}N{sub 0.24} thin films were demonstrated to be correlated with the formation of Li{sub 3}N and Si{sub 3}N{sub 4}. - Graphical abstract: The Si{sub 0.76}N{sub 0.24} thin films showed negligible initial capacity, but an abrupt capacity increase to {approx}2300 mA h/g after {approx}650 cycles, followed by excellent cycle-life performance. This abnormal electrochemical behavior was demonstrated to be correlated with the formation of Li{sub 3}N and Si{sub 3}N{sub 4}.« less

Dominant mycorrhizal association of trees alters carbon and nutrient cycling by selecting for microbial groups with distinct enzyme function.

PubMed

Cheeke, Tanya E; Phillips, Richard P; Brzostek, Edward R; Rosling, Anna; Bever, James D; Fransson, Petra

2017-04-01

While it is well established that plants associating with arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi cycle carbon (C) and nutrients in distinct ways, we have a limited understanding of whether varying abundance of ECM and AM plants in a stand can provide integrative proxies for key biogeochemical processes. We explored linkages between the relative abundance of AM and ECM trees and microbial functioning in three hardwood forests in southern Indiana, USA. Across each site's 'mycorrhizal gradient', we measured fungal biomass, fungal : bacterial (F : B) ratios, extracellular enzyme activities, soil carbon : nitrogen ratio, and soil pH over a growing season. We show that the percentage of AM or ECM trees in a plot promotes microbial communities that both reflect and determine the C to nutrient balance in soil. Soils dominated by ECM trees had higher F : B ratios and more standing fungal biomass than AM stands. Enzyme stoichiometry in ECM soils shifted to higher investment in extracellular enzymes needed for nitrogen and phosphorus acquisition than in C-acquisition enzymes, relative to AM soils. Our results suggest that knowledge of mycorrhizal dominance at the stand or landscape scale may provide a unifying framework for linking plant and microbial community dynamics, and predicting their effects on ecological function. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Wastewater influences nitrogen dynamics in a coastal catchment during a prolonged drought

PubMed Central

Hoellein, Timothy J.; Mooney, Rae F.; Gardner, Wayne S.; Buskey, Edward J.

2017-01-01

Abstract Ecosystem function measurements can enhance our understanding of nitrogen (N) delivery in coastal catchments across river and estuary ecosystems. Here, we contrast patterns of N cycling and export in two rivers, one heavily influenced by wastewater treatment plants (WWTP), in a coastal catchment of south Texas. We measured N export from both rivers to the estuary over 2 yr that encompass a severe drought, along with detailed mechanisms of N cycling in river, tidal river, and two estuary sites during prolonged drought. WWTP nutrient inputs stimulated uptake of N, but denitrification resulting in permanent N removal accounted for only a small proportion of total uptake. During drought periods, WWTP N was the primary source of exported N to the estuary, minimizing the influence of episodic storm‐derived nutrients from the WWTP‐influenced river to the estuary. In the site without WWTP influence, the river exported very little N during drought, so storm‐derived nutrient pulses were important for delivering N loads to the estuary. Overall, N is processed from river to estuary, but sustained WWTP‐N loads and periodic floods alter the timing of N delivery and N processing. Research that incorporates empirical measurements of N fluxes from river to estuary can inform management needs in the face of multiple anthropogenic stressors such as demand for freshwater and eutrophication. PMID:29263559

Spatiotemporal Patterns of Evapotranspiration in Response to Multiple Environmental Factors Simulated by the Community Land Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, Xiaoying; Mao, Jiafu; Thornton, P.

Spatiotemporal patterns of evapotranspiration (ET) over the period from 1982 to 2008 are investigated and attributed to multiple environmental factors using the Community Land Model version 4 (CLM4). Our results show that CLM4 captures the spatial distribution and interannual variability of ET well when compared to observation-based estimates. We find that climate dominates the predicted variability in ET. Elevated atmospheric CO2 concentration also plays an important role in modulating the trend of predicted ET over most land areas, and replaces climate to function as the dominant factor controlling ET changes over the North America, South America and Asia regions. Comparedmore » to the effect of climate and CO2 concentration, the roles of other factors such as nitrogen deposition, land use change and aerosol deposition are less pronounced and regionally dependent. The aerosol deposition contribution is the third most important factor for trends of ET over Europe, while it has the smallest impact over other regions. As ET is a dominant component of the terrestrial water cycle, our results suggest that environmental factors like elevated CO2, nitrogen and aerosol depositions, and land use change, in addition to climate, could have significant impact on future projections of water resources and water cycle dynamics at global and regional scales.« less

Impact of understory vegetation on soil carbon and nitrogen dynamic in aerially seeded Pinus massoniana plantations.

PubMed

Pan, Ping; Zhao, Fang; Ning, Jinkui; Zhang, Ling; Ouyang, Xunzhi; Zang, Hao

2018-01-01

Understory vegetation plays a vital role in regulating soil carbon (C) and nitrogen (N) characteristics due to differences in plant functional traits. Different understory vegetation types have been reported following aerial seeding. While aerial seeding is common in areas with serious soil erosion, few studies have been conducted to investigate changes in soil C and N cycling as affected by understory vegetation in aerially seeded plantations. Here, we studied soil C and N characteristics under two naturally formed understory vegetation types (Dicranopteris and graminoid) in aerially seeded Pinus massoniana Lamb plantations. Across the two studied understory vegetation types, soil organic C was significantly correlated with all measured soil N variables, including total N, available N, microbial biomass N and water-soluble organic N, while microbial biomass C was correlated with all measured variables except soil organic C. Dicranopteris and graminoid differed in their effects on soil C and N process. Except water-soluble organic C, all the other C and N variables were higher in soils with graminoids. The higher levels of soil organic C, microbial biomass C, total N, available N, microbial biomass N and water-soluble organic N were consistent with the higher litter and root quality (C/N) of graminoid vegetation compared to Dicranopteris. Changes in soil C and N cycles might be impacted by understory vegetation types via differences in litter or root quality.

Impact of understory vegetation on soil carbon and nitrogen dynamic in aerially seeded Pinus massoniana plantations

PubMed Central

Pan, Ping; Zhao, Fang; Ning, Jinkui; Ouyang, Xunzhi; Zang, Hao

2018-01-01

Understory vegetation plays a vital role in regulating soil carbon (C) and nitrogen (N) characteristics due to differences in plant functional traits. Different understory vegetation types have been reported following aerial seeding. While aerial seeding is common in areas with serious soil erosion, few studies have been conducted to investigate changes in soil C and N cycling as affected by understory vegetation in aerially seeded plantations. Here, we studied soil C and N characteristics under two naturally formed understory vegetation types (Dicranopteris and graminoid) in aerially seeded Pinus massoniana Lamb plantations. Across the two studied understory vegetation types, soil organic C was significantly correlated with all measured soil N variables, including total N, available N, microbial biomass N and water-soluble organic N, while microbial biomass C was correlated with all measured variables except soil organic C. Dicranopteris and graminoid differed in their effects on soil C and N process. Except water-soluble organic C, all the other C and N variables were higher in soils with graminoids. The higher levels of soil organic C, microbial biomass C, total N, available N, microbial biomass N and water-soluble organic N were consistent with the higher litter and root quality (C/N) of graminoid vegetation compared to Dicranopteris. Changes in soil C and N cycles might be impacted by understory vegetation types via differences in litter or root quality. PMID:29377926

Electrons, life and the evolution of Earth's oxygen cycle.

PubMed

Falkowski, Paul G; Godfrey, Linda V

2008-08-27

The biogeochemical cycles of H, C, N, O and S are coupled via biologically catalysed electron transfer (redox) reactions. The metabolic processes responsible for maintaining these cycles evolved over the first ca 2.3 Ga of Earth's history in prokaryotes and, through a sequence of events, led to the production of oxygen via the photobiologically catalysed oxidation of water. However, geochemical evidence suggests that there was a delay of several hundred million years before oxygen accumulated in Earth's atmosphere related to changes in the burial efficiency of organic matter and fundamental alterations in the nitrogen cycle. In the latter case, the presence of free molecular oxygen allowed ammonium to be oxidized to nitrate and subsequently denitrified. The interaction between the oxygen and nitrogen cycles in particular led to a negative feedback, in which increased production of oxygen led to decreased fixed inorganic nitrogen in the oceans. This feedback, which is supported by isotopic analyses of fixed nitrogen in sedimentary rocks from the Late Archaean, continues to the present. However, once sufficient oxygen accumulated in Earth's atmosphere to allow nitrification to out-compete denitrification, a new stable electron 'market' emerged in which oxygenic photosynthesis and aerobic respiration ultimately spread via endosymbiotic events and massive lateral gene transfer to eukaryotic host cells, allowing the evolution of complex (i.e. animal) life forms. The resulting network of electron transfers led a gas composition of Earth's atmosphere that is far from thermodynamic equilibrium (i.e. it is an emergent property), yet is relatively stable on geological time scales. The early coevolution of the C, N and O cycles, and the resulting non-equilibrium gaseous by-products can be used as a guide to search for the presence of life on terrestrial planets outside of our Solar System.

Differences in Plant Traits among N-fixing Trees in Hawaii Affect Understory Nitrogen Cycling

NASA Astrophysics Data System (ADS)

August-Schmidt, E.; D'Antonio, C. M.

2016-12-01

Nitrogen (N) fixing trees are frequently used to restore soil functions to degraded ecosystems because they can increase soil organic matter and N availability. Although N-fixers are lumped into a single functional group, the quality and quantity of the plant material they produce and the rate at which they accrete and add N to the cycling pool likely vary. This talk will focus on the questions: (1) How does N-cycling differ among N-fixing tree species? And (2) Which plant traits are most important in distinguishing the soil N environment? To address these questions, we investigated planted stands of two Hawaiian native N-fixing trees (Acacia koa and Sophora chrysophylla) and `natural' stands of an invasive N-fixing tree (Morella faya) in burned seasonal submontane woodlands in Hawaii Volcanoes National Park. We measured the relative availability of nitrogen in the soil pool and understory plant community as well as characterizing the rate and amount of N cycling in these stands both in the field and using long term soil incubations in the laboratory. We found that N is cycled very differently under these three N-fixers and that this correlates with differences in their leaf traits. S. chrysophylla had the highest foliar %N and highest specific leaf area, and stands of these trees are associated with faster N-cycling, resulting in greater N availability compared to all other site types. Incubated S. chrysophylla soils mineralized almost twice as much N as any other soil type over the course of the experiment. The comparatively high-N environment under S. chrysophylla suggests that litter quality may be more important than litter quantity in determining nitrogen availability to the understory community.

Permafrost carbon—climate feedback is sensitive to deep soil carbon decomposability but not deep soil nitrogen dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koven, Charles D.; Lawrence, David M.; Riley, William J.

Permafrost soils contain enormous amounts of organic carbon whose stability is contingent on remaining frozen. With future warming, these soils may release carbon to the atmosphere and act as a positive feedback to climate change. Significant uncertainty remains on the postthaw carbon dynamics of permafrost-affected ecosystems, in particular since most of the carbon resides at depth where decomposition dynamics may differ from surface soils, and since nitrogen mineralized by decomposition may enhance plant growth. Here we show, using a carbon–nitrogen model that includes permafrost processes forced in an unmitigated warming scenario, that the future carbon balance of the permafrost regionmore » is highly sensitive to the decomposability of deeper carbon, with the net balance ranging from 21 Pg C to 164 Pg C losses by 2300. Increased soil nitrogen mineralization reduces nutrient limitations, but the impact of deep nitrogen on the carbon budget is small due to enhanced nitrogen availability from warming surface soils and seasonal asynchrony between deeper nitrogen availability and plant nitrogen demands. The future carbon balance of this region is projected to hinge more on the rate and extent of permafrost thaw and soil decomposition than on enhanced nitrogen availability for vegetation growth resulting from permafrost thaw.« less

Permafrost carbon—climate feedback is sensitive to deep soil carbon decomposability but not deep soil nitrogen dynamics

DOE PAGES

Koven, Charles D.; Lawrence, David M.; Riley, William J.

2015-03-09

Permafrost soils contain enormous amounts of organic carbon whose stability is contingent on remaining frozen. With future warming, these soils may release carbon to the atmosphere and act as a positive feedback to climate change. Significant uncertainty remains on the postthaw carbon dynamics of permafrost-affected ecosystems, in particular since most of the carbon resides at depth where decomposition dynamics may differ from surface soils, and since nitrogen mineralized by decomposition may enhance plant growth. Here we show, using a carbon–nitrogen model that includes permafrost processes forced in an unmitigated warming scenario, that the future carbon balance of the permafrost regionmore » is highly sensitive to the decomposability of deeper carbon, with the net balance ranging from 21 Pg C to 164 Pg C losses by 2300. Increased soil nitrogen mineralization reduces nutrient limitations, but the impact of deep nitrogen on the carbon budget is small due to enhanced nitrogen availability from warming surface soils and seasonal asynchrony between deeper nitrogen availability and plant nitrogen demands. The future carbon balance of this region is projected to hinge more on the rate and extent of permafrost thaw and soil decomposition than on enhanced nitrogen availability for vegetation growth resulting from permafrost thaw.« less

Superior Cathode Performance of Nitrogen-Doped Graphene Frameworks for Lithium Ion Batteries.

PubMed

Xiong, Dongbin; Li, Xifei; Bai, Zhimin; Shan, Hui; Fan, Linlin; Wu, Chunxia; Li, Dejun; Lu, Shigang

2017-03-29

Development of alternative cathode materials is of highly desirable for sustainable and cost-efficient lithium-ion batteries (LIBs) in energy storage fields. In this study, for the first time, we report tunable nitrogen-doped graphene with active functional groups for cathode utilization of LIBs. When employed as cathode materials, the functionalized graphene frameworks with a nitrogen content of 9.26 at% retain a reversible capacity of 344 mAh g -1 after 200 cycles at a current density of 50 mA g -1 . More surprisingly, when conducted at a high current density of 1 A g -1 , this cathode delivers a high reversible capacity of 146 mAh g -1 after 1000 cycles. Our current research demonstrates the effective significance of nitrogen doping on enhancing cathode performance of functionalized graphene for LIBs.

Active-site protein dynamics and solvent accessibility in native Achromobacter cycloclastes copper nitrite reductase.

PubMed

Sen, Kakali; Horrell, Sam; Kekilli, Demet; Yong, Chin W; Keal, Thomas W; Atakisi, Hakan; Moreau, David W; Thorne, Robert E; Hough, Michael A; Strange, Richard W

2017-07-01

Microbial nitrite reductases are denitrifying enzymes that are a major component of the global nitrogen cycle. Multiple structures measured from one crystal (MSOX data) of copper nitrite reductase at 240 K, together with molecular-dynamics simulations, have revealed protein dynamics at the type 2 copper site that are significant for its catalytic properties and for the entry and exit of solvent or ligands to and from the active site. Molecular-dynamics simulations were performed using different protonation states of the key catalytic residues (Asp CAT and His CAT ) involved in the nitrite-reduction mechanism of this enzyme. Taken together, the crystal structures and simulations show that the Asp CAT protonation state strongly influences the active-site solvent accessibility, while the dynamics of the active-site 'capping residue' (Ile CAT ), a determinant of ligand binding, are influenced both by temperature and by the protonation state of Asp CAT . A previously unobserved conformation of Ile CAT is seen in the elevated temperature series compared with 100 K structures. DFT calculations also show that the loss of a bound water ligand at the active site during the MSOX series is consistent with reduction of the type 2 Cu atom.

Interactions between nitrogen deposition, land cover conversion, and climate change determine the contemporary carbon balance of Europe

NASA Astrophysics Data System (ADS)

Churkina, G.; Zaehle, S.; Hughes, J.; Viovy, N.; Chen, Y.; Jung, M.; Heumann, B. W.; Ramankutty, N.; Heimann, M.; Jones, C.

2010-09-01

European ecosystems are thought to take up large amounts of carbon, but neither the rate nor the contributions of the underlying processes are well known. In the second half of the 20th century, carbon dioxide concentrations have risen by more that 100 ppm, atmospheric nitrogen deposition has more than doubled, and European mean temperatures were increasing by 0.02 °C yr-1. The extents of forest and grasslands have increased with the respective rates of 5800 km2 yr-1 and 1100 km2 yr-1 as agricultural land has been abandoned at a rate of 7000 km2 yr-1. In this study, we analyze the responses of European land ecosystems to the aforementioned environmental changes using results from four process-based ecosystem models: BIOME-BGC, JULES, ORCHIDEE, and O-CN. The models suggest that European ecosystems sequester carbon at a rate of 56 TgC yr-1 (mean of four models for 1951-2000) with strong interannual variability (±88 TgC yr-1, average across models) and substantial inter-model uncertainty (±39 TgC yr-1). Decadal budgets suggest that there has been a continuous increase in the mean net carbon storage of ecosystems from 85 TgC yr-1 in 1980s to 108 TgC yr-1 in 1990s, and to 114 TgC yr-1 in 2000-2007. The physiological effect of rising CO2 in combination with nitrogen deposition and forest re-growth have been identified as the important explanatory factors for this net carbon storage. Changes in the growth of woody vegetation are suggested as an important contributor to the European carbon sink. Simulated ecosystem responses were more consistent for the two models accounting for terrestrial carbon-nitrogen dynamics than for the two models which only accounted for carbon cycling and the effects of land cover change. Studies of the interactions of carbon-nitrogen dynamics with land use changes are needed to further improve the quantitative understanding of the driving forces of the European land carbon balance.

Increased nitrogen availability counteracts climatic change feedback from increased temperature on boreal forest soil organic matter degradation

NASA Astrophysics Data System (ADS)

Erhagen, Bjorn; Nilsson, Mats; Oquist, Mats; Ilstedt, Ulrik; Sparrman, Tobias; Schleucher, Jurgen

2014-05-01

Over the last century, the greenhouse gas concentrations in the atmosphere have increased dramatically, greatly exceeding pre-industrial levels that had prevailed for the preceding 420 000 years. At the same time the annual anthropogenic contribution to the global terrestrial nitrogen cycle has increased and currently exceeds natural inputs. Both temperature and nitrogen levels have profound effects on the global carbon cycle including the rate of organic matter decomposition, which is the most important biogeochemical process that returns CO2 to the atmosphere. Here we show for the first time that increasing the availability of nitrogen not only directly affects the rate of organic matter decomposition but also significantly affects its temperature dependence. We incubated litter and soil organic matter from a long-term (40 years) nitrogen fertilization experiment in a boreal Scots pine (Pinus silvestris L.) forest at different temperatures and determined the temperature dependence of the decomposition of the sample's organic matter in each case. Nitrogen fertilization did not affect the temperature sensitivity (Q10) of the decomposition of fresh plant litter but strongly reduced that for humus soil organic matter. The Q10 response of the 0-3 cm soil layer decreased from 2.5±0.35 to an average of 1.9±0.21 over all nitrogen treatments, and from 2.2±0.19 to 1.6±0.16 in response to the most intense nitrogen fertilization treatment in the 4-7 cm soil layer. Long-term nitrogen additions also significantly affected the organic chemical composition (as determined by 13C CP-MAS NMR spectroscopy) of the soil organic matter. These changes in chemical composition contributed significantly (p<0.05) to the reduced Q10 response. These new insights into the relationship between nitrogen availability and the temperature sensitivity of organic matter decomposition will be important for understanding and predicting how increases in global temperature and rising anthropogenic nitrogen inputs will affect the global carbon cycle and the associated climatic feedback processes.

Low molecular carbon compounds present in the rhizosphere control denitrification kinetics

NASA Astrophysics Data System (ADS)

Herold, M.; Morley, N.; Baggs, E.

2013-12-01

Nitrogen and carbon cycles play key roles in plant-microbe interactions in soils. Carbon is supplied by plants to microbes in the form of root exudates which includes both high and low molecular compounds. Nitrogen in turn is taken up by plants and rhizosphere microbes metabolise nitrogen compounds in several biochemical pathways. The conversion of nitrogen compounds to volatile products in the process of denitrification leads to increasing amounts of nitrous oxide (N2O) in the atmosphere. Nitrous oxide is a potent greenhouse gas and increasing emissions of N2O through intense agriculture have lead to intensified research to find possible mitigation strategies to reduce N2O production from soil. In our study we show the effect of low molecular carbon compounds, typically found in root exudates, on the dynamics of denitrification as well as the dose response effect of the single compounds. The hypothesis was tested that different compound groups change the kinetics of the different reduction steps in the biochemical pathway of denitrification, which results in lower N2O production. Experiments were performed in soil-microcosms using 15N labelling approaches to monitor denitrification products . Microcosms were maintained as slurries in order to create oxygen limiting conditions, which favours denitrification. Carbon dioxide and N2O were monitored throughout the experiments and on three destructive sampling days NO3, NO2, NO and 15N-N2 were measured. Results showed that the denitrification process was differently affected by amino acids and organic acids with higher denitrification activity observed in the presence of organic acids. The dynamics of the single reduction steps were time dependent which indicates that substrate availability plays an important role in soil microbial activity. We concluded that the activity of denitrifiers are significantly influenced by different carbon compounds, and that further studies on the effects of the composition of root exudates could contribute to N2O mitigation strategies.