Sample records for early land plant

  1. Constraining the role of early land plants in Palaeozoic weathering and global cooling.

    PubMed

    Quirk, Joe; Leake, Jonathan R; Johnson, David A; Taylor, Lyla L; Saccone, Loredana; Beerling, David J

    2015-08-22

    How the colonization of terrestrial environments by early land plants over 400 Ma influenced rock weathering, the biogeochemical cycling of carbon and phosphorus, and climate in the Palaeozoic is uncertain. Here we show experimentally that mineral weathering by liverworts—an extant lineage of early land plants—partnering arbuscular mycorrhizal (AM) fungi, like those in 410 Ma-old early land plant fossils, amplified calcium weathering from basalt grains threefold to sevenfold, relative to plant-free controls. Phosphate weathering by mycorrhizal liverworts was amplified 9-13-fold over plant-free controls, compared with fivefold to sevenfold amplification by liverworts lacking fungal symbionts. Etching and trenching of phyllosilicate minerals increased with AM fungal network size and atmospheric CO2 concentration. Integration of grain-scale weathering rates over the depths of liverwort rhizoids and mycelia (0.1 m), or tree roots and mycelia (0.75 m), indicate early land plants with shallow anchorage systems were probably at least 10-fold less effective at enhancing the total weathering flux than later-evolving trees. This work challenges the suggestion that early land plants significantly enhanced total weathering and land-to-ocean fluxes of calcium and phosphorus, which have been proposed as a trigger for transient dramatic atmospheric CO2 sequestration and glaciations in the Ordovician. © 2015 The Authors.

  2. Major transitions in the evolution of early land plants: a bryological perspective

    PubMed Central

    Ligrone, Roberto; Duckett, Jeffrey G.; Renzaglia, Karen S.

    2012-01-01

    Background Molecular phylogeny has resolved the liverworts as the earliest-divergent clade of land plants and mosses as the sister group to hornworts plus tracheophytes, with alternative topologies resolving the hornworts as sister to mosses plus tracheophytes less well supported. The tracheophytes plus fossil plants putatively lacking lignified vascular tissue form the polysporangiophyte clade. Scope This paper reviews phylogenetic, developmental, anatomical, genetic and paleontological data with the aim of reconstructing the succession of events that shaped major land plant lineages. Conclusions Fundamental land plant characters primarily evolved in the bryophyte grade, and hence the key to a better understanding of the early evolution of land plants is in bryophytes. The last common ancestor of land plants was probably a leafless axial gametophyte bearing simple unisporangiate sporophytes. Water-conducting tissue, if present, was restricted to the gametophyte and presumably consisted of perforate cells similar to those in the early-divergent bryophytes Haplomitrium and Takakia. Stomata were a sporophyte innovation with the possible ancestral functions of producing a transpiration-driven flow of water and solutes from the parental gametophyte and facilitating spore separation before release. Stomata in mosses, hornworts and polysporangiophytes are viewed as homologous, and hence these three lineages are collectively referred to as the ‘stomatophytes’. An indeterminate sporophyte body (the sporophyte shoot) developing from an apical meristem was the key innovation in polysporangiophytes. Poikilohydry is the ancestral condition in land plants; homoiohydry evolved in the sporophyte of polysporangiophytes. Fungal symbiotic associations ancestral to modern arbuscular mycorrhizas evolved in the gametophytic generation before the separation of major present-living lineages. Hydroids are imperforate water-conducting cells specific to advanced mosses. Xylem vascular

  3. Oxygenation history of the Neoproterozoic to early Phanerozoic and the rise of land plants

    NASA Astrophysics Data System (ADS)

    Wallace, Malcolm W.; Hood, Ashleigh vS.; Shuster, Alice; Greig, Alan; Planavsky, Noah J.; Reed, Christopher P.

    2017-05-01

    There has been extensive debate about the history of Earth's oxygenation and the role that land plant evolution played in shaping Earth's ocean-atmosphere system. Here we use the rare earth element patterns in marine carbonates to monitor the structure of the marine redox landscape through the rise and diversification of animals and early land plants. In particular, we use the relative abundance of cerium (Ceanom), the only redox-sensitive rare earth element, in well-preserved marine cements and other marine precipitates to track seawater oxygen levels. Our results indicate that there was only a moderate increase in oceanic oxygenation during the Ediacaran (average Cryogenian Ceanom = 1.1, average Ediacaran Ceanom = 0.62), followed by a decrease in oxygen levels during the early Cambrian (average Cryogenian Ceanom = 0.90), with significant ocean anoxia persisting through the early and mid Paleozoic (average Early Cambrian-Early Devonian Ceanom = 0.84). It was not until the Late Devonian that oxygenation levels are comparable to the modern (average of all post-middle Devonian Ceanom = 0.55). Therefore, this work confirms growing evidence that the oxygenation of the Earth was neither unidirectional nor a simple two-stage process. Further, we provide evidence that it was not until the Late Devonian, when large land plants and forests first evolved, that oxygen levels reached those comparable to the modern world. This is recorded with the first modern-like negative Ceanom (values <0.6) occurring at around 380 Ma (Frasnian). This suggests that land plants, rather than animals, are the 'engineers' responsible for the modern fully oxygenated Earth system.

  4. Early Middle Ordovician evidence for land plants in Argentina (eastern Gondwana).

    PubMed

    Rubinstein, C V; Gerrienne, P; de la Puente, G S; Astini, R A; Steemans, P

    2010-10-01

    • The advent of embryophytes (land plants) is among the most important evolutionary breakthroughs in Earth history. It irreversibly changed climates and biogeochemical processes on a global scale; it allowed all eukaryotic terrestrial life to evolve and to invade nearly all continental environments. Before this work, the earliest unequivocal embryophyte traces were late Darriwilian (late Middle Ordovician; c. 463-461 million yr ago (Ma)) cryptospores from Saudi Arabia and from the Czech Republic (western Gondwana). • Here, we processed Dapingian (early Middle Ordovician, c. 473-471 Ma) palynological samples from Argentina (eastern Gondwana). • We discovered a diverse cryptospore assemblage, including naked and envelope-enclosed monads and tetrads, representing five genera. • Our discovery reinforces the earlier suggestion that embryophytes first evolved in Gondwana. It indicates that the terrestrialization of plants might have begun in the eastern part of Gondwana. The diversity of the Dapingian assemblage implies an earlier, Early Ordovician or even Cambrian, origin of embryophytes. Dapingian to Aeronian (Early Silurian) cryptospore assemblages are similar, suggesting that the rate of embryophyte evolution was extremely slow during the first c. 35-45 million yr of their diversification. The Argentinean cryptospores predate other cryptospore occurrences by c. 8-12 million yr, and are currently the earliest evidence of plants on land. © The Authors (2010). Journal compilation © New Phytologist Trust (2010).

  5. Phylotranscriptomic analysis of the origin and early diversification of land plants

    PubMed Central

    Wickett, Norman J.; Mirarab, Siavash; Nguyen, Nam; Warnow, Tandy; Carpenter, Eric; Matasci, Naim; Ayyampalayam, Saravanaraj; Barker, Michael S.; Burleigh, J. Gordon; Gitzendanner, Matthew A.; Ruhfel, Brad R.; Wafula, Eric; Graham, Sean W.; Mathews, Sarah; Melkonian, Michael; Soltis, Douglas E.; Soltis, Pamela S.; Miles, Nicholas W.; Rothfels, Carl J.; Pokorny, Lisa; Shaw, A. Jonathan; DeGironimo, Lisa; Stevenson, Dennis W.; Surek, Barbara; Villarreal, Juan Carlos; Roure, Béatrice; Philippe, Hervé; dePamphilis, Claude W.; Chen, Tao; Deyholos, Michael K.; Baucom, Regina S.; Kutchan, Toni M.; Augustin, Megan M.; Wang, Jun; Zhang, Yong; Tian, Zhijian; Yan, Zhixiang; Wu, Xiaolei; Sun, Xiao; Wong, Gane Ka-Shu; Leebens-Mack, James

    2014-01-01

    Reconstructing the origin and evolution of land plants and their algal relatives is a fundamental problem in plant phylogenetics, and is essential for understanding how critical adaptations arose, including the embryo, vascular tissue, seeds, and flowers. Despite advances in molecular systematics, some hypotheses of relationships remain weakly resolved. Inferring deep phylogenies with bouts of rapid diversification can be problematic; however, genome-scale data should significantly increase the number of informative characters for analyses. Recent phylogenomic reconstructions focused on the major divergences of plants have resulted in promising but inconsistent results. One limitation is sparse taxon sampling, likely resulting from the difficulty and cost of data generation. To address this limitation, transcriptome data for 92 streptophyte taxa were generated and analyzed along with 11 published plant genome sequences. Phylogenetic reconstructions were conducted using up to 852 nuclear genes and 1,701,170 aligned sites. Sixty-nine analyses were performed to test the robustness of phylogenetic inferences to permutations of the data matrix or to phylogenetic method, including supermatrix, supertree, and coalescent-based approaches, maximum-likelihood and Bayesian methods, partitioned and unpartitioned analyses, and amino acid versus DNA alignments. Among other results, we find robust support for a sister-group relationship between land plants and one group of streptophyte green algae, the Zygnematophyceae. Strong and robust support for a clade comprising liverworts and mosses is inconsistent with a widely accepted view of early land plant evolution, and suggests that phylogenetic hypotheses used to understand the evolution of fundamental plant traits should be reevaluated. PMID:25355905

  6. The early evolution of land plants, from fossils to genomics: a commentary on Lang (1937) 'On the plant-remains from the Downtonian of England and Wales'.

    PubMed

    Edwards, Dianne; Kenrick, Paul

    2015-04-19

    During the 1920s, the botanist W. H. Lang set out to collect and investigate some very unpromising fossils of uncertain affinity, which predated the known geological record of life on land. His discoveries led to a landmark publication in 1937, 'On the plant-remains from the Downtonian of England and Wales', in which he revealed a diversity of small fossil organisms of great simplicity that shed light on the nature of the earliest known land plants. These and subsequent discoveries have taken on new relevance as botanists seek to understand the plant genome and the early evolution of fundamental organ systems. Also, our developing knowledge of the composition of early land-based ecosystems and the interactions among their various components is contributing to our understanding of how life on land affects key Earth Systems (e.g. carbon cycle). The emerging paradigm is one of early life on land dominated by microbes, small bryophyte-like organisms and lichens. Collectively called cryptogamic covers, these are comparable with those that dominate certain ecosystems today. This commentary was written to celebrate the 350th anniversary of the journal Philosophical Transactions of the Royal Society.

  7. The early evolution of land plants, from fossils to genomics: a commentary on Lang (1937) ‘On the plant-remains from the Downtonian of England and Wales'

    PubMed Central

    Edwards, Dianne; Kenrick, Paul

    2015-01-01

    During the 1920s, the botanist W. H. Lang set out to collect and investigate some very unpromising fossils of uncertain affinity, which predated the known geological record of life on land. His discoveries led to a landmark publication in 1937, ‘On the plant-remains from the Downtonian of England and Wales’, in which he revealed a diversity of small fossil organisms of great simplicity that shed light on the nature of the earliest known land plants. These and subsequent discoveries have taken on new relevance as botanists seek to understand the plant genome and the early evolution of fundamental organ systems. Also, our developing knowledge of the composition of early land-based ecosystems and the interactions among their various components is contributing to our understanding of how life on land affects key Earth Systems (e.g. carbon cycle). The emerging paradigm is one of early life on land dominated by microbes, small bryophyte-like organisms and lichens. Collectively called cryptogamic covers, these are comparable with those that dominate certain ecosystems today. This commentary was written to celebrate the 350th anniversary of the journal Philosophical Transactions of the Royal Society. PMID:25750238

  8. Gravity, lignification, and land plant evolution

    NASA Technical Reports Server (NTRS)

    Siegel, S. M.; Siegel, B. Z.; Chen, J.

    1981-01-01

    Vascular plants began their occupation of the wetlands interfacing both terrestrial and marine environments at some point in early Paleozoic time. Chemical differences between green algae and vascular land plants are mainly related to an abundance of lignins in the land plants. Answers to questions relating to the phylogeny and adaptive significance of the lignins must depend on experiments and observations using contemporary plant material. A summary is provided of a series of such observations. It is found that the differences between modern Chlorophyta and vascular land plants cannot be explained in full on the basis of lignification alone. Nevertheless, the data point to the emergence of the primitive land populations into an oxygen-rich terrestrial world where the need for mechanical support and water conservation could be met by a single aerobic biochemical process connected to essential aromatic amino acids likely to be found in every cell

  9. Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants.

    PubMed

    Nickrent, D L; Parkinson, C L; Palmer, J D; Duff, R J

    2000-12-01

    A widely held view of land plant relationships places liverworts as the first branch of the land plant tree, whereas some molecular analyses and a cladistic study of morphological characters indicate that hornworts are the earliest land plants. To help resolve this conflict, we used parsimony and likelihood methods to analyze a 6, 095-character data set composed of four genes (chloroplast rbcL and small-subunit rDNA from all three plant genomes) from all major land plant lineages. In all analyses, significant support was obtained for the monophyly of vascular plants, lycophytes, ferns (including PSILOTUM: and EQUISETUM:), seed plants, and angiosperms. Relationships among the three bryophyte lineages were unresolved in parsimony analyses in which all positions were included and weighted equally. However, in parsimony and likelihood analyses in which rbcL third-codon-position transitions were either excluded or downweighted (due to apparent saturation), hornworts were placed as sister to all other land plants, with mosses and liverworts jointly forming the second deepest lineage. Decay analyses and Kishino-Hasegawa tests of the third-position-excluded data set showed significant support for the hornwort-basal topology over several alternative topologies, including the commonly cited liverwort-basal topology. Among the four genes used, mitochondrial small-subunit rDNA showed the lowest homoplasy and alone recovered essentially the same topology as the multigene tree. This molecular phylogeny presents new opportunities to assess paleontological evidence and morphological innovations that occurred during the early evolution of terrestrial plants.

  10. Algal ancestor of land plants was preadapted for symbiosis.

    PubMed

    Delaux, Pierre-Marc; Radhakrishnan, Guru V; Jayaraman, Dhileepkumar; Cheema, Jitender; Malbreil, Mathilde; Volkening, Jeremy D; Sekimoto, Hiroyuki; Nishiyama, Tomoaki; Melkonian, Michael; Pokorny, Lisa; Rothfels, Carl J; Sederoff, Heike Winter; Stevenson, Dennis W; Surek, Barbara; Zhang, Yong; Sussman, Michael R; Dunand, Christophe; Morris, Richard J; Roux, Christophe; Wong, Gane Ka-Shu; Oldroyd, Giles E D; Ané, Jean-Michel

    2015-10-27

    Colonization of land by plants was a major transition on Earth, but the developmental and genetic innovations required for this transition remain unknown. Physiological studies and the fossil record strongly suggest that the ability of the first land plants to form symbiotic associations with beneficial fungi was one of these critical innovations. In angiosperms, genes required for the perception and transduction of diffusible fungal signals for root colonization and for nutrient exchange have been characterized. However, the origin of these genes and their potential correlation with land colonization remain elusive. A comprehensive phylogenetic analysis of 259 transcriptomes and 10 green algal and basal land plant genomes, coupled with the characterization of the evolutionary path leading to the appearance of a key regulator, a calcium- and calmodulin-dependent protein kinase, showed that the symbiotic signaling pathway predated the first land plants. In contrast, downstream genes required for root colonization and their specific expression pattern probably appeared subsequent to the colonization of land. We conclude that the most recent common ancestor of extant land plants and green algae was preadapted for symbiotic associations. Subsequent improvement of this precursor stage in early land plants through rounds of gene duplication led to the acquisition of additional pathways and the ability to form a fully functional arbuscular mycorrhizal symbiosis.

  11. Origin and Evolution of The Early- Silurian Land Vascular Plants: Evidence From Biomarkers

    NASA Astrophysics Data System (ADS)

    Jin, R.

    2016-12-01

    Origin and early evolution of land vascular plants, is one of the most intriguing hotspots in the life science research. During the 1970s and 1980s,Pinnatiramosus qianensis was found in early-Silurian strata in guizhou of south China.43 years have passed. But so far, the biological characteristics and belonging of the age of this unique plant have been debated again and again, up in the air.Biomarkers have a good stability in the process of organic evolution, no more or less changed, so they have a special `function of mark'. While biomarkers can provide information about organic matter of hydrocarbon source rock (the source), the period of deposition and burial (diagenesis) environmental conditions, and many other aspects of information.This paper obtained the sedimentary environment, source of organic matter input and other relevant information, through extracting and analyzing biomarkers of the 26 samples in the late Ordovician to early Silurian strata in NorthGuizhou areas. According to the results, Pr/Ph of late Ordovician Meitan Fm-early Silurian Hanjiadian Fm is high.It manifests more pristane, characterized by reductive environment. At the bottom of the Hanjiadian Fm, Pr/Ph has a volatility.Some huge environmental changes may have taken place in the corresponding period. N-alkanes do not have parity advantage or has even carbon advantage slightly.The peak carbon is mainly in low carbon number.(C21 + C22)/(C28 + C29) is high.Aquatic organisms is a major source of organic matter during this period,C21-/C22+ is low.This may be caused by the relatively serious loss of light hydrocarbon during the separation of components. In the Hanjiadian Fm,information of C29/C27 sterane ratios and oleanane index showed a trend of rising at the same time, indicating that during this period, there was a gradual increase input in the number of higher plants.The stable carbon isotope of saturated hydrocarbon and aromatic hydrocarbon in the Hanjiadian Fm also gradually become

  12. RSL genes are sufficient for rhizoid system development in early diverging land plants.

    PubMed

    Jang, Geupil; Yi, Keke; Pires, Nuno D; Menand, Benoît; Dolan, Liam

    2011-06-01

    Land plants are anchored to their substratum from which essential inorganic nutrients are taken up. These functions are carried out by a system of rhizoids in early diverging groups of land plants, such as mosses, liverworts and hornworts. Physcomitrella patens RHD SIX-LIKE1 (PpRSL1) and PpRSL2 transcription factors are necessary for rhizoid development in mosses. Similar proteins, AtRHD6 and AtRSL1, control the development of root hairs in Arabidopsis thaliana. Auxin positively regulates root hair development independently of AtRHD6 and AtRSL1 in A. thaliana but the regulatory interactions between auxin and PpRSL1 and PpRSL2 are unknown. We show here that co-expression of PpRSL1 and PpRSL2 is sufficient for the development of the rhizoid system in the moss P. patens; constitutive expression of PpRSL1 and PpRSL2 converts developing leafy shoot axes (gametophores) into rhizoids. During wild-type development, PpRSL1 and PpRSL2 are expressed in the specialized cells that develop rhizoids, indicating that cell-specific expression of PpRSL1 and PpRSL2 is sufficient to promote rhizoid differentiation during wild-type P. patens development. In contrast to A. thaliana, auxin promotes rhizoid development by positively regulating PpRSL1 and PpRSL2 activity in P. patens. This indicates that even though the same genes control the development of root hairs and rhizoids, the regulation of this transcriptional network by auxin is different in these two species. This suggests that auxin might have controlled the development of the first land plant soil anchoring systems that evolved 465 million years ago by regulating the expression of RSL genes and that this regulatory network has changed since mosses and angiosperms last shared a common ancestor.

  13. Development and genetics in the evolution of land plant body plans

    PubMed Central

    2017-01-01

    The colonization of land by plants shaped the terrestrial biosphere, the geosphere and global climates. The nature of morphological and molecular innovation driving land plant evolution has been an enigma for over 200 years. Recent phylogenetic and palaeobotanical advances jointly demonstrate that land plants evolved from freshwater algae and pinpoint key morphological innovations in plant evolution. In the haploid gametophyte phase of the plant life cycle, these include the innovation of mulitcellular forms with apical growth and multiple growth axes. In the diploid phase of the life cycle, multicellular axial sporophytes were an early innovation priming subsequent diversification of indeterminate branched forms with leaves and roots. Reverse and forward genetic approaches in newly emerging model systems are starting to identify the genetic basis of such innovations. The data place plant evo-devo research at the cusp of discovering the developmental and genetic changes driving the radiation of land plant body plans. This article is part of the themed issue ‘Evo-devo in the genomics era, and the origins of morphological diversity’. PMID:27994131

  14. Evidence for land plant cell wall biosynthetic mechanisms in charophyte green algae

    PubMed Central

    Mikkelsen, Maria D.; Harholt, Jesper; Ulvskov, Peter; Johansen, Ida E.; Fangel, Jonatan U.; Doblin, Monika S.; Bacic, Antony; Willats, William G. T.

    2014-01-01

    Background and Aims The charophyte green algae (CGA) are thought to be the closest living relatives to the land plants, and ancestral CGA were unique in giving rise to the land plant lineage. The cell wall has been suggested to be a defining structure that enabled the green algal ancestor to colonize land. These cell walls provide support and protection, are a source of signalling molecules, and provide developmental cues for cell differentiation and elongation. The cell wall of land plants is a highly complex fibre composite, characterized by cellulose cross-linked by non-cellulosic polysaccharides, such as xyloglucan, embedded in a matrix of pectic polysaccharides. How the land plant cell wall evolved is currently unknown: early-divergent chlorophyte and prasinophyte algae genomes contain a low number of glycosyl transferases (GTs), while land plants contain hundreds. The number of GTs in CGA is currently unknown, as no genomes are available, so this study sought to give insight into the evolution of the biosynthetic machinery of CGA through an analysis of available transcriptomes. Methods Available CGA transcriptomes were mined for cell wall biosynthesis GTs and compared with GTs characterized in land plants. In addition, gene cloning was employed in two cases to answer important evolutionary questions. Key Results Genetic evidence was obtained indicating that many of the most important core cell wall polysaccharides have their evolutionary origins in the CGA, including cellulose, mannan, xyloglucan, xylan and pectin, as well as arabino-galactan protein. Moreover, two putative cellulose synthase-like D family genes (CSLDs) from the CGA species Coleochaete orbicularis and a fragment of a putative CSLA/K-like sequence from a CGA Spirogyra species were cloned, providing the first evidence that all the cellulose synthase/-like genes present in early-divergent land plants were already present in CGA. Conclusions The results provide new insights into the evolution of

  15. Four hundred million years of silica biomineralization in land plants.

    PubMed

    Trembath-Reichert, Elizabeth; Wilson, Jonathan Paul; McGlynn, Shawn E; Fischer, Woodward W

    2015-04-28

    Biomineralization plays a fundamental role in the global silicon cycle. Grasses are known to mobilize significant quantities of Si in the form of silica biominerals and dominate the terrestrial realm today, but they have relatively recent origins and only rose to taxonomic and ecological prominence within the Cenozoic Era. This raises questions regarding when and how the biological silica cycle evolved. To address these questions, we examined silica abundances of extant members of early-diverging land plant clades, which show that silica biomineralization is widespread across terrestrial plant linages. Particularly high silica abundances are observed in lycophytes and early-diverging ferns. However, silica biomineralization is rare within later-evolving gymnosperms, implying a complex evolutionary history within the seed plants. Electron microscopy and X-ray spectroscopy show that the most common silica-mineralized tissues include the vascular system, epidermal cells, and stomata, which is consistent with the hypothesis that biomineralization in plants is frequently coupled to transpiration. Furthermore, sequence, phylogenetic, and structural analysis of nodulin 26-like intrinsic proteins from diverse plant genomes points to a plastic and ancient capacity for silica accumulation within terrestrial plants. The integration of these two comparative biology approaches demonstrates that silica biomineralization has been an important process for land plants over the course of their >400 My evolutionary history.

  16. Ordovician ash geochemistry and the establishment of land plants

    PubMed Central

    2012-01-01

    The colonization of the terrestrial environment by land plants transformed the planetary surface and its biota, and shifted the balance of Earth’s biomass from the subsurface towards the surface. However there was a long delay between the formation of palaeosols (soils) on the land surface and the key stage of plant colonization. The record of palaeosols, and their colonization by fungi and lichens extends well back into the Precambrian. While these early soils provided a potential substrate, they were generally leached of nutrients as part of the weathering process. In contrast, volcanic ash falls provide a geochemically favourable substrate that is both nutrient-rich and has high water retention, making them good hosts to land plants. An anomalously extensive system of volcanic arcs generated unprecedented volumes of lava and volcanic ash (tuff) during the Ordovician. The earliest, mid-Ordovician, records of plant spores coincide with these widespread volcanic deposits, suggesting the possibility of a genetic relationship. The ash constituted a global environment of nutrient-laden, water-saturated soil that could be exploited to maximum advantage by the evolving anchoring systems of land plants. The rapid and pervasive inoculation of modern volcanic ash by plant spores, and symbiotic nitrogen-fixing fungi, suggests that the Ordovician ash must have received a substantial load of the earliest spores and their chemistry favoured plant development. In particular, high phosphorus levels in ash were favourable to plant growth. This may have allowed photosynthesizers to diversify and enlarge, and transform the surface of the planet. PMID:22925460

  17. Four hundred million years of silica biomineralization in land plants

    PubMed Central

    Trembath-Reichert, Elizabeth; Wilson, Jonathan Paul; McGlynn, Shawn E.; Fischer, Woodward W.

    2015-01-01

    Biomineralization plays a fundamental role in the global silicon cycle. Grasses are known to mobilize significant quantities of Si in the form of silica biominerals and dominate the terrestrial realm today, but they have relatively recent origins and only rose to taxonomic and ecological prominence within the Cenozoic Era. This raises questions regarding when and how the biological silica cycle evolved. To address these questions, we examined silica abundances of extant members of early-diverging land plant clades, which show that silica biomineralization is widespread across terrestrial plant linages. Particularly high silica abundances are observed in lycophytes and early-diverging ferns. However, silica biomineralization is rare within later-evolving gymnosperms, implying a complex evolutionary history within the seed plants. Electron microscopy and X-ray spectroscopy show that the most common silica-mineralized tissues include the vascular system, epidermal cells, and stomata, which is consistent with the hypothesis that biomineralization in plants is frequently coupled to transpiration. Furthermore, sequence, phylogenetic, and structural analysis of nodulin 26-like intrinsic proteins from diverse plant genomes points to a plastic and ancient capacity for silica accumulation within terrestrial plants. The integration of these two comparative biology approaches demonstrates that silica biomineralization has been an important process for land plants over the course of their >400 My evolutionary history. PMID:25825729

  18. Restless 5S: the re-arrangement(s) and evolution of the nuclear ribosomal DNA in land plants.

    PubMed

    Wicke, Susann; Costa, Andrea; Muñoz, Jesùs; Quandt, Dietmar

    2011-11-01

    Among eukaryotes two types of nuclear ribosomal DNA (nrDNA) organization have been observed. Either all components, i.e. the small ribosomal subunit, 5.8S, large ribosomal subunit, and 5S occur tandemly arranged or the 5S rDNA forms a separate cluster of its own. Generalizations based on data derived from just a few model organisms have led to a superimposition of structural and evolutionary traits to the entire plant kingdom asserting that plants generally possess separate arrays. This study reveals that plant nrDNA organization into separate arrays is not a distinctive feature, but rather assignable almost solely to seed plants. We show that early diverging land plants and presumably streptophyte algae share a co-localization of all rRNA genes within one repeat unit. This raises the possibility that the state of rDNA gene co-localization had occurred in their common ancestor. Separate rDNA arrays were identified for all basal seed plants and water ferns, implying at least two independent 5S rDNA transposition events during land plant evolution. Screening for 5S derived Cassandra transposable elements which might have played a role during the transposition events, indicated that this retrotransposon is absent in early diverging vascular plants including early fern lineages. Thus, Cassandra can be rejected as a primary mechanism for 5S rDNA transposition in water ferns. However, the evolution of Cassandra and other eukaryotic 5S derived elements might have been a side effect of the 5S rDNA cluster formation. Structural analysis of the intergenic spacers of the ribosomal clusters revealed that transposition events partially affect spacer regions and suggests a slightly different transcription regulation of 5S rDNA in early land plants. 5S rDNA upstream regulatory elements are highly divergent or absent from the LSU-5S spacers of most early divergent land plant lineages. Several putative scenarios and mechanisms involved in the concerted relocation of hundreds of 5S

  19. The phenotype of the CRINKLY4 deletion mutant of Physcomitrella patens suggests a broad role in developmental regulation in early land plants.

    PubMed

    Demko, Viktor; Ako, Eugene; Perroud, Pierre-François; Quatrano, Ralph; Olsen, Odd-Arne

    2016-07-01

    Deletion of the ancestral gene of the land plant multigene family of receptor like kinase CR4 in Physcomitrella patens demonstrates involvement in developmental control of gametophytic and sporophytic organs. The CRINKLY4 (CR4) family of receptor kinases in angiosperms consists of three clades, one including CR4, the CR4-related CCR1 and CCR2, a second including CCR3 and CCR4 family members, and a third and more distant clade. In addition to crinkly leaves in maize, which gave rise to the mutant gene name, CR4 is implicated in ovule, embryo, flower and root development in Arabidopsis thaliana. In root tips of the same species the module including a CLAVATA3/ESR-related protein, an Arabidopsis CR4, a CLAVATA1 and a WUSCHEL-related homeobox 5 (CLE40-ACR4-CLV1-WOX5) is implicated in meristem cell regulation. In embryos and shoots, CR4 acts together with A. thaliana MERISTEM LAYER 1 and PROTODERMAL FACTOR 2 to promote A. thaliana epidermis differentiation. Phylogenetic analysis has demonstrated that early land plants, e.g. mosses carry a single ancestral CR4 gene, together with genes encoding the other members of the CLE40-ACR4-CLV1-WOX5 signaling module. Here we show that CR4 serves as a broad regulator of morphogenesis both in gametophyte phyllids, archegonia and in sporophyte epidermis of the moss Physcomitrella patens. The phenotype of the CR4 deletion mutant in moss provides insight into the role of the ancestral CR4 gene as a regulator of development in early land plants.

  20. Origin and radiation of the earliest vascular land plants.

    PubMed

    Steemans, Philippe; Hérissé, Alain Le; Melvin, John; Miller, Merrell A; Paris, Florentin; Verniers, Jacques; Wellman, Charles H

    2009-04-17

    Colonization of the land by plants most likely occurred in a stepwise fashion starting in the Mid-Ordovician. The earliest flora of bryophyte-like plants appears to have been cosmopolitan and dominated the planet, relatively unchanged, for some 30 million years. It is represented by fossilized dispersed cryptospores and fragmentary plant remains. In the Early Silurian, cryptospore abundance and diversity diminished abruptly as trilete spores appeared, became abundant, and underwent rapid diversification. This change coincides approximately with the appearance of vascular plant megafossils and probably represents the origin and adaptive radiation of vascular plants. We have obtained a diverse trilete spore occurrence from the Late Ordovician that suggests that vascular plants originated and diversified earlier than previously hypothesized, in Gondwana, before migrating elsewhere and secondarily diversifying.

  1. Climate effects caused by land plant invasion in the Devonian

    NASA Astrophysics Data System (ADS)

    Hir guillaume, Le; yannick, Donnadieu; yves, Goddéris; brigitte, Meyer-Berthaud; gilles, Ramstein

    2017-04-01

    Land plants invaded continents during the Mid-Paleozoic. Their spreading and diversification have been compared to the Cambrian explosion in terms of intensity and impact on the diversification of life on Earth. Whereas prior studies were focused on the evolution of the root system and its weathering contribution, here we investigated the biophysical impacts of plant colonization on the surface climate through changes in continental albedo, roughness, thermal properties, and potential evaporation using a 3D-climate model coupled to a global biogeochemical cycles associated to a simple model for vegetation dynamics adapted to Devonian conditions. From the Early to the Late Devonian, we show that continental surface changes induced by land plants and tectonic drift have produced a large CO2 drawdown without being associated to a global cooling, because the cooling trend is counteracted by a warming trend resulting from the surface albedo reduction. If CO2 is consensually assumed as the main driver of the Phanerozoic climate, during land-plant invasion, the modifications of soil properties could have played in the opposite direction of the carbon dioxide fall, hence maintaining warm temperatures during part of the Devonian.

  2. Hydraulics of Asteroxylon mackei, an early Devonian vascular plant, and the early evolution of water transport tissue in terrestrial plants.

    PubMed

    Wilson, J P; Fischer, W W

    2011-03-01

    The core of plant physiology is a set of functional solutions to a tradeoff between CO(2) acquisition and water loss. To provide an important evolutionary perspective on how the earliest land plants met this tradeoff, we constructed a mathematical model (constrained geometrically with measurements of fossils) of the hydraulic resistance of Asteroxylon, an Early Devonian plant. The model results illuminate the water transport physiology of one of the earliest vascular plants. Results show that Asteroxylon's vascular system contains cells with low hydraulic resistances; these resistances are low because cells were covered by scalariform pits, elliptical structures that permit individual cells to have large areas for water to pass from one cell to another. Asteroxylon could move a large amount of water quickly given its large pit areas; however, this would have left these plants particularly vulnerable to damage from excessive evapotranspiration. These results highlight a repeated pattern in plant evolution, wherein the evolution of highly conductive vascular tissue precedes the appearance of adaptations to increase water transport safety. Quantitative insight into the vascular transport of Asteroxylon also allows us to reflect on the quality of CO(2) proxy estimates based on early land plant fossils. Because Asteroxylon's vascular tissue lacked any safety features to prevent permanent damage, it probably used stomatal abundance and behavior to prevent desiccation. If correct, low stomatal frequencies in Asteroxylon reflect the need to limit evapotranspiration, rather than adaptation to high CO(2) concentrations in the atmosphere. More broadly, methods to reveal and understand water transport in extinct plants have a clear use in testing and bolstering fossil plant-based paleoclimate proxies. © 2011 Blackwell Publishing Ltd.

  3. Gravity and land plant evolution: experimental induction of lignification by simulated hypergravity and water stress.

    PubMed

    Chen, N; Siegel, S M; Siegel, B Z

    1980-01-01

    The ability to lignify cell walls has long been associated with the upright condition and sometimes massive body of the land plant, and gravitational regulation of lignification has been demonstrated by clinostat/centrifuge techniques. Previous centrifuge experiments were conducted using plants in the early stages of growth, hence already programmed for immediate lignification. Elodea, an aquatic Angiosperm long believed to be incapable of lignification synthesizes lignin or lignin-like phenolics during 6 days incubation at 80 g . Yields in some cases exceeded stationary controls by as much as 300%. Supporting data were obtained using bean cotyledons. Exposure to 80 g induced lignification in extra-vascular tissue along with vascular lignin deposits. The loss of a buoyant medium also deprived early land plants of unlimited water: the lignin content in cucumber seedlings grown in water is reduced 50% or more relative to pot grown plants but water stress elevates lignin content as much as 100%. This suggests that the water status of the land environment may have provided a "backup" or "reinforcement" signal for an adaptive axial support system.

  4. Phylogenetics and evolution of Trx SET genes in fully sequenced land plants.

    PubMed

    Zhu, Xinyu; Chen, Caoyi; Wang, Baohua

    2012-04-01

    Plant Trx SET proteins are involved in H3K4 methylation and play a key role in plant floral development. Genes encoding Trx SET proteins constitute a multigene family in which the copy number varies among plant species and functional divergence appears to have occurred repeatedly. To investigate the evolutionary history of the Trx SET gene family, we made a comprehensive evolutionary analysis on this gene family from 13 major representatives of green plants. A novel clustering (here named as cpTrx clade), which included the III-1, III-2, and III-4 orthologous groups, previously resolved was identified. Our analysis showed that plant Trx proteins possessed a variety of domain organizations and gene structures among paralogs. Additional domains such as PHD, PWWP, and FYR were early integrated into primordial SET-PostSET domain organization of cpTrx clade. We suggested that the PostSET domain was lost in some members of III-4 orthologous group during the evolution of land plants. At least four classes of gene structures had been formed at the early evolutionary stage of land plants. Three intronless orphan Trx SET genes from the Physcomitrella patens (moss) were identified, and supposedly, their parental genes have been eliminated from the genome. The structural differences among evolutionary groups of plant Trx SET genes with different functions were described, contributing to the design of further experimental studies.

  5. Conserved Organisation of 45S rDNA Sites and rDNA Gene Copy Number among Major Clades of Early Land Plants

    PubMed Central

    Rosato, Marcela; Kovařík, Aleš; Garilleti, Ricardo; Rosselló, Josep A.

    2016-01-01

    Genes encoding ribosomal RNA (rDNA) are universal key constituents of eukaryotic genomes, and the nuclear genome harbours hundreds to several thousand copies of each species. Knowledge about the number of rDNA loci and gene copy number provides information for comparative studies of organismal and molecular evolution at various phylogenetic levels. With the exception of seed plants, the range of 45S rDNA locus (encoding 18S, 5.8S and 26S rRNA) and gene copy number variation within key evolutionary plant groups is largely unknown. This is especially true for the three earliest land plant lineages Marchantiophyta (liverworts), Bryophyta (mosses), and Anthocerotophyta (hornworts). In this work, we report the extent of rDNA variation in early land plants, assessing the number of 45S rDNA loci and gene copy number in 106 species and 25 species, respectively, of mosses, liverworts and hornworts. Unexpectedly, the results show a narrow range of ribosomal locus variation (one or two 45S rDNA loci) and gene copies not present in vascular plant lineages, where a wide spectrum is recorded. Mutation analysis of whole genomic reads showed higher (3-fold) intragenomic heterogeneity of Marchantia polymorpha (Marchantiophyta) rDNA compared to Physcomitrella patens (Bryophyta) and two angiosperms (Arabidopsis thaliana and Nicotiana tomentosifomis) suggesting the presence of rDNA pseudogenes in its genome. No association between phylogenetic position, taxonomic adscription and the number of rDNA loci and gene copy number was found. Our results suggest a likely evolutionary rDNA stasis during land colonisation and diversification across 480 myr of bryophyte evolution. We hypothesise that strong selection forces may be acting against ribosomal gene locus amplification. Despite showing a predominant haploid phase and infrequent meiosis, overall rDNA homogeneity is not severely compromised in bryophytes. PMID:27622766

  6. Exploring the geochemical distribution of organic carbon in early land plants: a novel approach.

    PubMed

    Abbott, Geoffrey D; Fletcher, Ian W; Tardio, Sabrina; Hack, Ethan

    2018-02-05

    Terrestrialization depended on the evolution of biosynthetic pathways for biopolymers including lignin, cutin and suberin, which were concentrated in specific tissues, layers or organs such as the xylem, cuticle and roots on the submillimetre scale. However, it is often difficult, or even impossible especially for individual cells, to resolve the biomolecular composition of the different components of fossil plants on such a scale using the well-established coupled techniques of gas chromatography/mass spectrometry and liquid chromatography/mass spectrometry. Here, we report the application of techniques for surface analysis to investigate the composition of Rhynia gwynne-vaughanii X-ray photoelectron spectroscopy of two different spots (both 300 µm × 600 µm) confirmed the presence of carbon. Time-of-flight secondary ion mass spectrometry (ToF-SIMS) revealed 'chemical maps' (imaging mode with 300 nm resolution) of aliphatic and aromatic carbon in the intact fossil that correlate with the vascular structures observed in high-resolution optical images. This study shows that imaging ToF-SIMS has value for determining the location of the molecular components of fossil embryophytes while retaining structural information that will help elucidate how terrestrialization shaped the early evolution of land plant cell wall biochemistry.This article is part of a discussion meeting issue 'The Rhynie cherts: our earliest terrestrial ecosystem revisited'. © 2017 The Author(s).

  7. Evolutionary origin of phytochrome responses and signaling in land plants.

    PubMed

    Inoue, Keisuke; Nishihama, Ryuichi; Kohchi, Takayuki

    2017-11-01

    Phytochromes comprise one of the major photoreceptor families in plants, and they regulate many aspects of plant growth and development throughout the plant life cycle. A canonical land plant phytochrome originated in the common ancestor of streptophytes. Phytochromes have diversified in seed plants and some basal land plants because of lineage-specific gene duplications that occurred during the course of land plant evolution. Molecular genetic analyses using Arabidopsis thaliana suggested that there are two types of phytochromes in angiosperms, light-labile type I and light-stable type II, which have different signaling mechanisms and which regulate distinct responses. In basal land plants, little is known about molecular mechanisms of phytochrome signaling, although red light/far-red photoreversible physiological responses and the distribution of phytochrome genes are relatively well documented. Recent advances in molecular genetics using the moss Physcomitrella patens and the liverwort Marchantia polymorpha revealed that basal land plants show far-red-induced responses and that the establishment of phytochrome-mediated transcriptional regulation dates back to at least the common ancestor of land plants. In this review, we summarize our knowledge concerning functions of land plant phytochromes, especially in basal land plants, and discuss subfunctionalization/neofunctionalization of phytochrome signaling during the course of land plant evolution. © 2017 John Wiley & Sons Ltd.

  8. New observations of the early land plant Eocooksonia Doweld from the Pridoli (Upper Silurian) of Xinjiang, China

    NASA Astrophysics Data System (ADS)

    Xue, Jinzhuang; Wang, Qi; Wang, Deming; Wang, Yi; Hao, Shougang

    2015-04-01

    As an early land plant previously reported from the Upper Silurian (Pridoli) of Xinjiang, Northwest China and Central Kazakhstan, the circumscription of Eocooksonia sphaerica (Senkevitsch) Doweld remains ill-defined because of the paucity of specimens and poor preservation in marine deposits. New specimens of this plant are described from the Pridoli-aged Wutubulake Formation of the Junggar Basin, Xinjiang. New observations and comparisons with the type material from Kazakhstan confirm the pseudomonopodial branching pattern, which forms an apparent main axis with lateral dichotomously branching systems. Our specimens demonstrate that the terminal sporangia of Eocooksonia Doweld consist of a central body and a border with four to eight elongate-triangular emergences, a character shown in the published illustrations of the type material but not mentioned in the original diagnosis. Eocooksonia may be close to Cooksonia Lang and Pertonella Fanning, Edwards et Richardson in affinities, particularly to the latter that has terminal discoidal sporangia with spiny emergences. It is deduced that the sporangial central body of Eocooksonia contains sporogenous tissues, which are covered by a distal surface wall with radiated emergences. One sporangium specimen of an unnamed plant is also described from the Wutubulake Formation of Xinjiang; it shows a central body with a wide border lacking emergences, and represents a taxon superficially similar to Eocooksonia.

  9. A phenol-enriched cuticle is ancestral to lignin evolution in land plants.

    PubMed

    Renault, Hugues; Alber, Annette; Horst, Nelly A; Basilio Lopes, Alexandra; Fich, Eric A; Kriegshauser, Lucie; Wiedemann, Gertrud; Ullmann, Pascaline; Herrgott, Laurence; Erhardt, Mathieu; Pineau, Emmanuelle; Ehlting, Jürgen; Schmitt, Martine; Rose, Jocelyn K C; Reski, Ralf; Werck-Reichhart, Danièle

    2017-03-08

    Lignin, one of the most abundant biopolymers on Earth, derives from the plant phenolic metabolism. It appeared upon terrestrialization and is thought critical for plant colonization of land. Early diverging land plants do not form lignin, but already have elements of its biosynthetic machinery. Here we delete in a moss the P450 oxygenase that defines the entry point in angiosperm lignin metabolism, and find that its pre-lignin pathway is essential for development. This pathway does not involve biochemical regulation via shikimate coupling, but instead is coupled with ascorbate catabolism, and controls the synthesis of the moss cuticle, which prevents desiccation and organ fusion. These cuticles share common features with lignin, cutin and suberin, and may represent the extant representative of a common ancestor. Our results demonstrate a critical role for the ancestral phenolic metabolism in moss erect growth and cuticle permeability, consistent with importance in plant adaptation to terrestrial conditions.

  10. A phenol-enriched cuticle is ancestral to lignin evolution in land plants

    PubMed Central

    Renault, Hugues; Alber, Annette; Horst, Nelly A.; Basilio Lopes, Alexandra; Fich, Eric A.; Kriegshauser, Lucie; Wiedemann, Gertrud; Ullmann, Pascaline; Herrgott, Laurence; Erhardt, Mathieu; Pineau, Emmanuelle; Ehlting, Jürgen; Schmitt, Martine; Rose, Jocelyn K. C.; Reski, Ralf; Werck-Reichhart, Danièle

    2017-01-01

    Lignin, one of the most abundant biopolymers on Earth, derives from the plant phenolic metabolism. It appeared upon terrestrialization and is thought critical for plant colonization of land. Early diverging land plants do not form lignin, but already have elements of its biosynthetic machinery. Here we delete in a moss the P450 oxygenase that defines the entry point in angiosperm lignin metabolism, and find that its pre-lignin pathway is essential for development. This pathway does not involve biochemical regulation via shikimate coupling, but instead is coupled with ascorbate catabolism, and controls the synthesis of the moss cuticle, which prevents desiccation and organ fusion. These cuticles share common features with lignin, cutin and suberin, and may represent the extant representative of a common ancestor. Our results demonstrate a critical role for the ancestral phenolic metabolism in moss erect growth and cuticle permeability, consistent with importance in plant adaptation to terrestrial conditions. PMID:28270693

  11. Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants

    PubMed Central

    Chang, Ying; Wang, Sishuo; Sekimoto, Satoshi; Aerts, Andrea L.; Choi, Cindy; Clum, Alicia; LaButti, Kurt M.; Lindquist, Erika A.; Yee Ngan, Chew; Ohm, Robin A.; Salamov, Asaf A.; Grigoriev, Igor V.; Spatafora, Joseph W.; Berbee, Mary L.

    2015-01-01

    As decomposers, fungi are key players in recycling plant material in global carbon cycles. We hypothesized that genomes of early diverging fungi may have inherited pectinases from an ancestral species that had been able to extract nutrients from pectin-containing land plants and their algal allies (Streptophytes). We aimed to infer, based on pectinase gene expansions and on the organismal phylogeny, the geological timing of the plant–fungus association. We analyzed 40 fungal genomes, three of which, including Gonapodya prolifera, were sequenced for this study. In the organismal phylogeny from 136 housekeeping loci, Rozella diverged first from all other fungi. Gonapodya prolifera was included among the flagellated, predominantly aquatic fungal species in Chytridiomycota. Sister to Chytridiomycota were the predominantly terrestrial fungi including zygomycota I and zygomycota II, along with the ascomycetes and basidiomycetes that comprise Dikarya. The Gonapodya genome has 27 genes representing five of the seven classes of pectin-specific enzymes known from fungi. Most of these share a common ancestry with pectinases from Dikarya. Indicating functional and sequence similarity, Gonapodya, like many Dikarya, can use pectin as a carbon source for growth in pure culture. Shared pectinases of Dikarya and Gonapodya provide evidence that even ancient aquatic fungi had adapted to extract nutrients from the plants in the green lineage. This implies that 750 million years, the estimated maximum age of origin of the pectin-containing streptophytes represents a maximum age for the divergence of Chytridiomycota from the lineage including Dikarya. PMID:25977457

  12. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

    PubMed

    Bowman, John L; Kohchi, Takayuki; Yamato, Katsuyuki T; Jenkins, Jerry; Shu, Shengqiang; Ishizaki, Kimitsune; Yamaoka, Shohei; Nishihama, Ryuichi; Nakamura, Yasukazu; Berger, Frédéric; Adam, Catherine; Aki, Shiori Sugamata; Althoff, Felix; Araki, Takashi; Arteaga-Vazquez, Mario A; Balasubrmanian, Sureshkumar; Barry, Kerrie; Bauer, Diane; Boehm, Christian R; Briginshaw, Liam; Caballero-Perez, Juan; Catarino, Bruno; Chen, Feng; Chiyoda, Shota; Chovatia, Mansi; Davies, Kevin M; Delmans, Mihails; Demura, Taku; Dierschke, Tom; Dolan, Liam; Dorantes-Acosta, Ana E; Eklund, D Magnus; Florent, Stevie N; Flores-Sandoval, Eduardo; Fujiyama, Asao; Fukuzawa, Hideya; Galik, Bence; Grimanelli, Daniel; Grimwood, Jane; Grossniklaus, Ueli; Hamada, Takahiro; Haseloff, Jim; Hetherington, Alexander J; Higo, Asuka; Hirakawa, Yuki; Hundley, Hope N; Ikeda, Yoko; Inoue, Keisuke; Inoue, Shin-Ichiro; Ishida, Sakiko; Jia, Qidong; Kakita, Mitsuru; Kanazawa, Takehiko; Kawai, Yosuke; Kawashima, Tomokazu; Kennedy, Megan; Kinose, Keita; Kinoshita, Toshinori; Kohara, Yuji; Koide, Eri; Komatsu, Kenji; Kopischke, Sarah; Kubo, Minoru; Kyozuka, Junko; Lagercrantz, Ulf; Lin, Shih-Shun; Lindquist, Erika; Lipzen, Anna M; Lu, Chia-Wei; De Luna, Efraín; Martienssen, Robert A; Minamino, Naoki; Mizutani, Masaharu; Mizutani, Miya; Mochizuki, Nobuyoshi; Monte, Isabel; Mosher, Rebecca; Nagasaki, Hideki; Nakagami, Hirofumi; Naramoto, Satoshi; Nishitani, Kazuhiko; Ohtani, Misato; Okamoto, Takashi; Okumura, Masaki; Phillips, Jeremy; Pollak, Bernardo; Reinders, Anke; Rövekamp, Moritz; Sano, Ryosuke; Sawa, Shinichiro; Schmid, Marc W; Shirakawa, Makoto; Solano, Roberto; Spunde, Alexander; Suetsugu, Noriyuki; Sugano, Sumio; Sugiyama, Akifumi; Sun, Rui; Suzuki, Yutaka; Takenaka, Mizuki; Takezawa, Daisuke; Tomogane, Hirokazu; Tsuzuki, Masayuki; Ueda, Takashi; Umeda, Masaaki; Ward, John M; Watanabe, Yuichiro; Yazaki, Kazufumi; Yokoyama, Ryusuke; Yoshitake, Yoshihiro; Yotsui, Izumi; Zachgo, Sabine; Schmutz, Jeremy

    2017-10-05

    The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

  13. A DNA barcode for land plants.

    PubMed

    2009-08-04

    DNA barcoding involves sequencing a standard region of DNA as a tool for species identification. However, there has been no agreement on which region(s) should be used for barcoding land plants. To provide a community recommendation on a standard plant barcode, we have compared the performance of 7 leading candidate plastid DNA regions (atpF-atpH spacer, matK gene, rbcL gene, rpoB gene, rpoC1 gene, psbK-psbI spacer, and trnH-psbA spacer). Based on assessments of recoverability, sequence quality, and levels of species discrimination, we recommend the 2-locus combination of rbcL+matK as the plant barcode. This core 2-locus barcode will provide a universal framework for the routine use of DNA sequence data to identify specimens and contribute toward the discovery of overlooked species of land plants.

  14. Sex chromosomes in land plants.

    PubMed

    Ming, Ray; Bendahmane, Abdelhafid; Renner, Susanne S

    2011-01-01

    Sex chromosomes in land plants can evolve as a consequence of close linkage between the two sex determination genes with complementary dominance required to establish stable dioecious populations, and they are found in at least 48 species across 20 families. The sex chromosomes in hepatics, mosses, and gymnosperms are morphologically heteromorphic. In angiosperms, heteromorphic sex chromosomes are found in at least 19 species from 4 families, while homomorphic sex chromosomes occur in 20 species from 13 families. The prevalence of the XY system found in 44 out of 48 species may reflect the predominance of the evolutionary pathway from gynodioecy towards dioecy. All dioecious species have the potential to evolve sex chromosomes, and reversions back from dioecy to various forms of monoecy, gynodioecy, or androdioecy have also occurred. Such reversals may occur especially during the early stages of sex chromosome evolution before the lethality of the YY (or WW) genotype is established.

  15. A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution.

    PubMed

    Okano, Yosuke; Aono, Naoki; Hiwatashi, Yuji; Murata, Takashi; Nishiyama, Tomoaki; Ishikawa, Takaaki; Kubo, Minoru; Hasebe, Mitsuyasu

    2009-09-22

    Land plants have distinct developmental programs in haploid (gametophyte) and diploid (sporophyte) generations. Although usually the two programs strictly alternate at fertilization and meiosis, one program can be induced during the other program. In a process called apogamy, cells of the gametophyte other than the egg cell initiate sporophyte development. Here, we report for the moss Physcomitrella patens that apogamy resulted from deletion of the gene orthologous to the Arabidopsis thaliana CURLY LEAF (PpCLF), which encodes a component of polycomb repressive complex 2 (PRC2). In the deletion lines, a gametophytic vegetative cell frequently gave rise to a sporophyte-like body. This body grew indeterminately from an apical cell with the character of a sporophytic pluripotent stem cell but did not form a sporangium. Furthermore, with continued culture, the sporophyte-like body branched. Sporophyte branching is almost unknown among extant bryophytes. When PpCLF was expressed in the deletion lines once the sporophyte-like bodies had formed, pluripotent stem cell activity was arrested and a sporangium-like organ formed. Supported by the observed pattern of PpCLF expression, these results demonstrate that, in the gametophyte, PpCLF represses initiation of a sporophytic pluripotent stem cell and, in the sporophyte, represses that stem cell activity and induces reproductive organ development. In land plants, branching, along with indeterminate apical growth and delayed initiation of spore-bearing reproductive organs, were conspicuous innovations for the evolution of a dominant sporophyte plant body. Our study provides insights into the role of PRC2 gene regulation for sustaining evolutionary innovation in land plants.

  16. A DNA barcode for land plants

    PubMed Central

    Hollingsworth, Peter M.; Forrest, Laura L.; Spouge, John L.; Hajibabaei, Mehrdad; Ratnasingham, Sujeevan; van der Bank, Michelle; Chase, Mark W.; Cowan, Robyn S.; Erickson, David L.; Fazekas, Aron J.; Graham, Sean W.; James, Karen E.; Kim, Ki-Joong; Kress, W. John; Schneider, Harald; van AlphenStahl, Jonathan; Barrett, Spencer C.H.; van den Berg, Cassio; Bogarin, Diego; Burgess, Kevin S.; Cameron, Kenneth M.; Carine, Mark; Chacón, Juliana; Clark, Alexandra; Clarkson, James J.; Conrad, Ferozah; Devey, Dion S.; Ford, Caroline S.; Hedderson, Terry A.J.; Hollingsworth, Michelle L.; Husband, Brian C.; Kelly, Laura J.; Kesanakurti, Prasad R.; Kim, Jung Sung; Kim, Young-Dong; Lahaye, Renaud; Lee, Hae-Lim; Long, David G.; Madriñán, Santiago; Maurin, Olivier; Meusnier, Isabelle; Newmaster, Steven G.; Park, Chong-Wook; Percy, Diana M.; Petersen, Gitte; Richardson, James E.; Salazar, Gerardo A.; Savolainen, Vincent; Seberg, Ole; Wilkinson, Michael J.; Yi, Dong-Keun; Little, Damon P.

    2009-01-01

    DNA barcoding involves sequencing a standard region of DNA as a tool for species identification. However, there has been no agreement on which region(s) should be used for barcoding land plants. To provide a community recommendation on a standard plant barcode, we have compared the performance of 7 leading candidate plastid DNA regions (atpF–atpH spacer, matK gene, rbcL gene, rpoB gene, rpoC1 gene, psbK–psbI spacer, and trnH–psbA spacer). Based on assessments of recoverability, sequence quality, and levels of species discrimination, we recommend the 2-locus combination of rbcL+matK as the plant barcode. This core 2-locus barcode will provide a universal framework for the routine use of DNA sequence data to identify specimens and contribute toward the discovery of overlooked species of land plants. PMID:19666622

  17. A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land.

    PubMed

    Emiliani, Giovanni; Fondi, Marco; Fani, Renato; Gribaldo, Simonetta

    2009-02-16

    The pioneering ancestor of land plants that conquered terrestrial habitats around 500 million years ago had to face dramatic stresses including UV radiation, desiccation, and microbial attack. This drove a number of adaptations, among which the emergence of the phenylpropanoid pathway was crucial, leading to essential compounds such as flavonoids and lignin. However, the origin of this specific land plant secondary metabolism has not been clarified. We have performed an extensive analysis of the taxonomic distribution and phylogeny of Phenylalanine Ammonia Lyase (PAL), which catalyses the first and essential step of the general phenylpropanoid pathway, leading from phenylalanine to p-Coumaric acid and p-Coumaroyl-CoA, the entry points of the flavonoids and lignin routes. We obtained robust evidence that the ancestor of land plants acquired a PAL via horizontal gene transfer (HGT) during symbioses with soil bacteria and fungi that are known to have established very early during the first steps of land colonization. This horizontally acquired PAL represented then the basis for further development of the phenylpropanoid pathway and plant radiation on terrestrial environments. Our results highlight a possible crucial role of HGT from soil bacteria in the path leading to land colonization by plants and their subsequent evolution. The few functional characterizations of sediment/soil bacterial PAL (production of secondary metabolites with powerful antimicrobial activity or production of pigments) suggest that the initial advantage of this horizontally acquired PAL in the ancestor of land plants might have been either defense against an already developed microbial community and/or protection against UV.

  18. Quantitative Hydraulic Models Of Early Land Plants Provide Insight Into Middle Paleozoic Terrestrial Paleoenvironmental Conditions

    NASA Astrophysics Data System (ADS)

    Wilson, J. P.; Fischer, W. W.

    2010-12-01

    humidity (<20%) combined with elevated temperatures (>25°C) could cause sufficient cavitation to reduce hydraulic conductivity by 50%. This suggests that the Early Devonian environments that supported the earliest vascular plants were not subject to prolonged midseason droughts, or, alternatively, that the growing season was short. This places minimum constraints on water availability (e.g., groundwater hydration, relative humidity) in locations where Asteroxylon fossils are found; these environments must have had high relative humidities, comparable to tropical riparian environments. Given these constraints, biome-scale paleovegetation models that place early vascular plants distal to water sources can be revised to account for reduced drought tolerance. Paleoclimate proxies that treat early terrestrial plants as functionally interchangeable can incorporate physiological differences in a quantitatively meaningful way. Application of hydraulic models to fossil plants provides an additional perspective on the 475 million-year history of terrestrial photosynthetic environments and has potential to corroborate other plant-based paleoclimate proxies.

  19. Embryophyte stress signaling evolved in the algal progenitors of land plants.

    PubMed

    de Vries, Jan; Curtis, Bruce A; Gould, Sven B; Archibald, John M

    2018-04-10

    Streptophytes are unique among photosynthetic eukaryotes in having conquered land. As the ancestors of land plants, streptophyte algae are hypothesized to have possessed exaptations to the environmental stressors encountered during the transition to terrestrial life. Many of these stressors, including high irradiance and drought, are linked to plastid biology. We have investigated global gene expression patterns across all six major streptophyte algal lineages, analyzing a total of around 46,000 genes assembled from a little more than 1.64 billion sequence reads from six organisms under three growth conditions. Our results show that streptophyte algae respond to cold and high light stress via expression of hallmark genes used by land plants (embryophytes) during stress-response signaling and downstream responses. Among the strongest differentially regulated genes were those associated with plastid biology. We observed that among streptophyte algae, those most closely related to land plants, especially Zygnema , invest the largest fraction of their transcriptional budget in plastid-targeted proteins and possess an array of land plant-type plastid-nucleus communication genes. Streptophyte algae more closely related to land plants also appear most similar to land plants in their capacity to respond to plastid stressors. Support for this notion comes from the detection of a canonical abscisic acid receptor of the PYRABACTIN RESISTANCE (PYR/PYL/RCAR) family in Zygnema , the first found outside the land plant lineage. We conclude that a fine-tuned response toward terrestrial plastid stressors was among the exaptations that allowed streptophytes to colonize the terrestrial habitat on a global scale. Copyright © 2018 the Author(s). Published by PNAS.

  20. Divergence times and the evolution of morphological complexity in an early land plant lineage (Marchantiopsida) with a slow molecular rate.

    PubMed

    Villarreal A, Juan Carlos; Crandall-Stotler, Barbara J; Hart, Michelle L; Long, David G; Forrest, Laura L

    2016-03-01

    We present a complete generic-level phylogeny of the complex thalloid liverworts, a lineage that includes the model system Marchantia polymorpha. The complex thalloids are remarkable for their slow rate of molecular evolution and for being the only extant plant lineage to differentiate gas exchange tissues in the gametophyte generation. We estimated the divergence times and analyzed the evolutionary trends of morphological traits, including air chambers, rhizoids and specialized reproductive structures. A multilocus dataset was analyzed using maximum likelihood and Bayesian approaches. Relative rates were estimated using local clocks. Our phylogeny cements the early branching in complex thalloids. Marchantia is supported in one of the earliest divergent lineages. The rate of evolution in organellar loci is slower than for other liverwort lineages, except for two annual lineages. Most genera diverged in the Cretaceous. Marchantia polymorpha diversified in the Late Miocene, giving a minimum age estimate for the evolution of its sex chromosomes. The complex thalloid ancestor, excluding Blasiales, is reconstructed as a plant with a carpocephalum, with filament-less air chambers opening via compound pores, and without pegged rhizoids. Our comprehensive study of the group provides a temporal framework for the analysis of the evolution of critical traits essential for plants during land colonization. © 2015 Royal Botanic Garden Edinburgh. New Phytologist © 2015 New Phytologist Trust.

  1. Contrasting Effects of Land Use Intensity and Exotic Host Plants on the Specialization of Interactions in Plant-Herbivore Networks

    PubMed Central

    de Araújo, Walter Santos; Vieira, Marcos Costa; Lewinsohn, Thomas M.; Almeida-Neto, Mário

    2015-01-01

    Human land use tends to decrease the diversity of native plant species and facilitate the invasion and establishment of exotic ones. Such changes in land use and plant community composition usually have negative impacts on the assemblages of native herbivorous insects. Highly specialized herbivores are expected to be especially sensitive to land use intensification and the presence of exotic plant species because they are neither capable of consuming alternative plant species of the native flora nor exotic plant species. Therefore, higher levels of land use intensity might reduce the proportion of highly specialized herbivores, which ultimately would lead to changes in the specialization of interactions in plant-herbivore networks. This study investigates the community-wide effects of land use intensity on the degree of specialization of 72 plant-herbivore networks, including effects mediated by the increase in the proportion of exotic plant species. Contrary to our expectation, the net effect of land use intensity on network specialization was positive. However, this positive effect of land use intensity was partially canceled by an opposite effect of the proportion of exotic plant species on network specialization. When we analyzed networks composed exclusively of endophagous herbivores separately from those composed exclusively of exophagous herbivores, we found that only endophages showed a consistent change in network specialization at higher land use levels. Altogether, these results indicate that land use intensity is an important ecological driver of network specialization, by way of reducing the local host range of herbivore guilds with highly specialized feeding habits. However, because the effect of land use intensity is offset by an opposite effect owing to the proportion of exotic host species, the net effect of land use in a given herbivore assemblage will likely depend on the extent of the replacement of native host species with exotic ones. PMID

  2. Contrasting effects of land use intensity and exotic host plants on the specialization of interactions in plant-herbivore networks.

    PubMed

    de Araújo, Walter Santos; Vieira, Marcos Costa; Lewinsohn, Thomas M; Almeida-Neto, Mário

    2015-01-01

    Human land use tends to decrease the diversity of native plant species and facilitate the invasion and establishment of exotic ones. Such changes in land use and plant community composition usually have negative impacts on the assemblages of native herbivorous insects. Highly specialized herbivores are expected to be especially sensitive to land use intensification and the presence of exotic plant species because they are neither capable of consuming alternative plant species of the native flora nor exotic plant species. Therefore, higher levels of land use intensity might reduce the proportion of highly specialized herbivores, which ultimately would lead to changes in the specialization of interactions in plant-herbivore networks. This study investigates the community-wide effects of land use intensity on the degree of specialization of 72 plant-herbivore networks, including effects mediated by the increase in the proportion of exotic plant species. Contrary to our expectation, the net effect of land use intensity on network specialization was positive. However, this positive effect of land use intensity was partially canceled by an opposite effect of the proportion of exotic plant species on network specialization. When we analyzed networks composed exclusively of endophagous herbivores separately from those composed exclusively of exophagous herbivores, we found that only endophages showed a consistent change in network specialization at higher land use levels. Altogether, these results indicate that land use intensity is an important ecological driver of network specialization, by way of reducing the local host range of herbivore guilds with highly specialized feeding habits. However, because the effect of land use intensity is offset by an opposite effect owing to the proportion of exotic host species, the net effect of land use in a given herbivore assemblage will likely depend on the extent of the replacement of native host species with exotic ones.

  3. Broad phylogenomic sampling and the sister lineage of land plants.

    PubMed

    Timme, Ruth E; Bachvaroff, Tsvetan R; Delwiche, Charles F

    2012-01-01

    The tremendous diversity of land plants all descended from a single charophyte green alga that colonized the land somewhere between 430 and 470 million years ago. Six orders of charophyte green algae, in addition to embryophytes, comprise the Streptophyta s.l. Previous studies have focused on reconstructing the phylogeny of organisms tied to this key colonization event, but wildly conflicting results have sparked a contentious debate over which lineage gave rise to land plants. The dominant view has been that 'stoneworts,' or Charales, are the sister lineage, but an alternative hypothesis supports the Zygnematales (often referred to as "pond scum") as the sister lineage. In this paper, we provide a well-supported, 160-nuclear-gene phylogenomic analysis supporting the Zygnematales as the closest living relative to land plants. Our study makes two key contributions to the field: 1) the use of an unbiased method to collect a large set of orthologs from deeply diverging species and 2) the use of these data in determining the sister lineage to land plants. We anticipate this updated phylogeny not only will hugely impact lesson plans in introductory biology courses, but also will provide a solid phylogenetic tree for future green-lineage research, whether it be related to plants or green algae.

  4. Post-Fire Peat Land Understory Plant in Rimba Panjang, Sumatera, Indonesia

    NASA Astrophysics Data System (ADS)

    Firdaus, L. N.; Nursal; Wulandari, Sri; Syafi'i, Wan; Fauziah, Yuslim

    2017-12-01

    The existence of understory plants during early post-fire succession is essential in term of natural post-fire ecological restoration. More than fifty percent of fire incidents in Riau, Sumatera, Indonesia occurred in shallow peat lands which have the huge impact on vegetation damage. This study aims to explore the understory plants species and diversity in post-fire peat land at Rimba Panjang, Kampar Regency, Sumatera, Indonesia. By using survey method, the observations were conducted on 150 plots which were distributed randomly over four locations based on the year after fire: 2009, 2014, 2015 and 2016. We found respectively 12, 14, 19 and 17 species at that sites with respective Shannon Wiener diversity index were 1.72, 2.00, 2.14 and 2.40. All the sites were dominated by Stenochlaena palustris (Burm.). Coverage percentage of understory vegetation were respectively 28.87%, 25.50%, 51.60% and 54.13%. Overall, we found 31 species of 17 familia. The result showed that the species composition, diversity index and coverage percentage of understory plant are likely to decrease in line with the length of time after the fire. Post peatland fires in Rimba Panjang are still having the characteristics of the peat swamp habitat which was dominated by Stenochlaena palustris (Burm.). Ecological restoration of that habitat is still possible, but it is necessary to consider technological and socio-economical aspects of local communities.

  5. Climate signals in Palaeozoic land plants

    PubMed Central

    Edwards, D.

    1998-01-01

    The Palaeozoic is regarded as a period in which it is difficult to recognize climate signals in land plants because they have few or no close extant relatives. In addition early, predominantly axial, representatives lack the features, e.g. leaf laminae, secondary growth, used later as qualitative and quantitive measures of past climates. Exceptions are stomata, and the preliminary results of a case study of a single taxon present throughout the Devonian, and analysis of stomatal complex anatomy attempt to disentangle evolutionary, taxonomic, habitat and atmospheric effects on stomatal frequencies. Ordovician-Silurian vegetation is represented mainly by spores whose widespread global distribution on palaeocontinental reconstructions with inferred climates suggest that the producers were independent of major climate variables, probably employing the physiology and behavioural strategies of extant bryophytes, further characterized by small size. Growth-ring studies, first possible on Mid-Devonian plants, have proved most informative in elucidating the climate at high palaeolatitudes in Late Permian Gondwana. Changes in the composition of Carboniferous-Permian low-latitude wetland vegetation are discussed in relation to tectonic activity and glaciation, with most confidence placed on the conclusion that major extinctions at the Westphalian-Stephanian boundary in Euramerica resulted from increased seasonality created by changes in circulation patterns at low latitudes imposed by the decrease of glaciations in most parts of Gondwana.

  6. Herbivore-plant interactions and desertification in arid lands

    USDA-ARS?s Scientific Manuscript database

    Arid lands around the world have experienced or are currently experiencing degradation that is known as desertification. Animal-plant interactions that have an effect on desertification are among the most important function of animals in arid ecosystems. Desertification has been defined as land de...

  7. Use of Frankia and Actinorhizal Plants for Degraded Lands Reclamation

    PubMed Central

    Diagne, Nathalie; Ngom, Mariama; Nambiar-Veetil, Mathish; Franche, Claudine; Narayanan, Krishna Kumar; Laplaze, Laurent

    2013-01-01

    Degraded lands are defined by soils that have lost primary productivity due to abiotic or biotic stresses. Among the abiotic stresses, drought, salinity, and heavy metals are the main threats in tropical areas. These stresses affect plant growth and reduce their productivity. Nitrogen-fixing plants such as actinorhizal species that are able to grow in poor and disturbed soils are widely planted for the reclamation of such degraded lands. It has been reported that association of soil microbes especially the nitrogen-fixing bacteria Frankia with these actinorhizal plants can mitigate the adverse effects of abiotic and biotic stresses. Inoculation of actinorhizal plants with Frankia significantly improves plant growth, biomass, shoot and root N content, and survival rate after transplanting in fields. However, the success of establishment of actinorhizal plantation in degraded sites depends upon the choice of effective strains of Frankia. Studies related to the beneficial role of Frankia on the establishment of actinorhizal plants in degraded soils are scarce. In this review, we describe some examples of the use of Frankia inoculation to improve actinorhizal plant performances in harsh conditions for reclamation of degraded lands. PMID:24350296

  8. Early detection of invasive plants: principles and practices

    USGS Publications Warehouse

    Welch, Bradley A.; Geissler, Paul H.; Latham, Penelope

    2014-01-01

    Invasive plants infest an estimated 2.6 million acres of the 83 million acres managed by the National Park Service (NPS) in the United States. The consequences of these invasions present a significant challenge for the NPS to manage the agency’s natural resources “unimpaired for the enjoyment of future generations.” More NPS lands are infested daily despite diligent efforts to curtail the problem. Impacts from invasive species have been realized in most parks, resulting in an expressed need to control existing infestations and restore affected ecosystems. There is a growing urgency in the NPS and other resource management organizations to be proactive. The NPS I&M Program, in collaboration with the U.S. Geological Survey (USGS) Status and Trends Program, compiled this document to provide guidance and insight to parks and other natural areas engaged in developing early-detection monitoring protocols for invasive plants. While several rapid response frameworks exist, there is no consistent or comprehensive guidance informing the active detection of nonnative plants early in the invasion process. Early-detection was selected as a primary focus for invasive-species monitoring because, along with rapid response, it is a key strategy for successful management of invasive species. Eradication efforts are most successful on small infestations (that is less than 1 hectare) and become less successful as infestation size increases, to the point that eradication is unlikely for large (that is greater than 1,000 hectares) populations of invasive plants. This document provides guidance for natural resource managers wishing to detect invasive plants early through an active, directed monitoring program. It has a Quick-Start Guide to direct readers to specific chapters and text relevant to their needs. Decision trees and flow charts assist the reader in deciding what methods to choose and when to use them. This document is written in a modular format to accommodate use of

  9. Land plants, weathering, and Paleozoic climatic evolution

    NASA Astrophysics Data System (ADS)

    Goddéris, Yves; Maffre, Pierre; Donnadieu, Yannick; Carretier, Sébastien

    2017-04-01

    At the end of the Paleozoic, the Earth plunged into the longest and most severe glaciation of the Phanerozoic eon (Montanez et al., 2013). The triggers for this event (called the Late Paleozoic Ice Age, LPIA) are still debated. Based on field observations and laboratory experiments showing that CO2 consumption by rock weathering is enhanced by the presence of plants, the onset of the LPIA has been related to the colonization of the continents by vascular plants in the latest Devonian. By releasing organic acids, concentrating respired CO2 in the soil, and by mechanically breaking rocks with their roots, land plants may have increased the weatherability of the continental surfaces. The "greening" of the continents may also have contributed to an enhanced burial of organic carbon in continental sedimentary basins, assuming that lignin decomposers have not yet evolved (Berner, 2004). As a consequence, CO2 went down, setting the conditions for the onset of the LPIA. This scenario is now widely accepted in the scientific community, and reinforces the feeling that biotic evolutionary steps are main drivers of the long-term climatic evolution. Although appealing, this scenario suffers from some weaknesses. The timing of the continent colonization by vascular plants was achieved in the late Devonian, several tens of million years before the onset of the LPIA (Davies and Gibling, 2013). Second, lignin decomposer fungi were present at the beginning of the Carboniferous, 360 million years ago while the LPIA started around 340-330 Ma (Nelsen et al., 2016). Land plants have also decreased the continental albedo, warming the Earth surface and promoting runoff. Weathering was thus facilitated and CO2 went down. Yet, temperature may have stayed constant, the albedo change compensating for the CO2 fall (Le Hir et al., 2010). From a modelling point of view, the effect of land plants on CO2 consumption by rock weathering is accounted for by forcing the weatherability of the

  10. Morphological evolution in land plants: new designs with old genes

    PubMed Central

    Pires, Nuno D.; Dolan, Liam

    2012-01-01

    The colonization and radiation of multicellular plants on land that started over 470 Ma was one of the defining events in the history of this planet. For the first time, large amounts of primary productivity occurred on the continental surface, paving the way for the evolution of complex terrestrial ecosystems and altering global biogeochemical cycles; increased weathering of continental silicates and organic carbon burial resulted in a 90 per cent reduction in atmospheric carbon dioxide levels. The evolution of plants on land was itself characterized by a series of radical transformations of their body plans that included the formation of three-dimensional tissues, de novo evolution of a multicellular diploid sporophyte generation, evolution of multicellular meristems, and the development of specialized tissues and organ systems such as vasculature, roots, leaves, seeds and flowers. In this review, we discuss the evolution of the genes and developmental mechanisms that drove the explosion of plant morphologies on land. Recent studies indicate that many of the gene families which control development in extant plants were already present in the earliest land plants. This suggests that the evolution of novel morphologies was to a large degree driven by the reassembly and reuse of pre-existing genetic mechanisms. PMID:22232763

  11. Morphological evolution in land plants: new designs with old genes.

    PubMed

    Pires, Nuno D; Dolan, Liam

    2012-02-19

    The colonization and radiation of multicellular plants on land that started over 470 Ma was one of the defining events in the history of this planet. For the first time, large amounts of primary productivity occurred on the continental surface, paving the way for the evolution of complex terrestrial ecosystems and altering global biogeochemical cycles; increased weathering of continental silicates and organic carbon burial resulted in a 90 per cent reduction in atmospheric carbon dioxide levels. The evolution of plants on land was itself characterized by a series of radical transformations of their body plans that included the formation of three-dimensional tissues, de novo evolution of a multicellular diploid sporophyte generation, evolution of multicellular meristems, and the development of specialized tissues and organ systems such as vasculature, roots, leaves, seeds and flowers. In this review, we discuss the evolution of the genes and developmental mechanisms that drove the explosion of plant morphologies on land. Recent studies indicate that many of the gene families which control development in extant plants were already present in the earliest land plants. This suggests that the evolution of novel morphologies was to a large degree driven by the reassembly and reuse of pre-existing genetic mechanisms.

  12. Plant defences on land and in water: why are they so different?

    PubMed Central

    2016-01-01

    Background Plants (attached photosynthesizing organisms) are eaten by a wide variety of herbivorous animals. Despite a vast literature on plant defence, contrasting patterns of antiherbivore adaptation among marine, freshwater and land plants have been little noticed, documented or understood. Scope Here I show how the surrounding medium (water or air) affects not only the plants themselves, but also the sensory and locomotor capacities of herbivores and their predators, and I discuss patterns of defence and host specialization of plants and herbivores on land and in water. I analysed the literature on herbivory with special reference to mechanical defences and sensory cues emitted by plants. Spines, hairs, asymmetrically oriented features on plant surfaces, and visual and olfactory signals that confuse or repel herbivores are common in land plants but rare or absent in water-dwelling plants. Small terrestrial herbivores are more often host-specific than their aquatic counterparts. I propose that patterns of selection on terrestrial herbivores and plants differ from those on aquatic species. Land plants must often attract animal dispersers and pollinators that, like their herbivorous counterparts, require sophisticated locomotor and sensory abilities. Plants counter their attractiveness to animal helpers by evolving effective contact defences and long-distance cues that mislead or warn herbivores. The locomotor and sensory world of small aquatic herbivores is more limited. These characteristics result from the lower viscosity and density of air compared with water as well as from limitations on plant physiology and signal transmission in water. Evolutionary innovations have not eliminated the contrasts in the conditions of life between water and land. Conclusion Plant defence can be understood fully when herbivores and their victims are considered in the broader context of other interactions among coexisting species and of the medium in which these interactions

  13. Microtubule-organizing centers and nucleating sites in land plants.

    PubMed

    Vaughn, K C; Harper, J D

    1998-01-01

    Microtubule-organizing centers (MTOCs) are morphologically diverse cellular sites involved in the nucleation and organization of microtubules (MTs). These structures are synonymous with the centrosome in mammalian cells. In most land plant cells, however, no such structures are observed and some have argued that plant cells may not have MTOCs. This review summarizes a number of experimental approaches toward the elucidation of those subcellular sites involved in microtubule nucleation and organization. In lower land plants, structurally well-defined MTOCs are present, such as the blepharoplast, multilayered structure, and polar organizer. In higher plants, much of the nucleation and organization of MTs occurs on the nuclear envelope or other endomembranes, such as the plasmalemma and smooth (tubular) endoplasmic reticulum. In some instances, one endomembrane may serve as a site of nucleation whereas others serve as the site of organization. Structural and motor microtubule-associated proteins also appear to be involved in MT nucleation and organization. Immunochemical evidence indicates that at least several of the proteins found in mammalian centrosomes, gamma-tubulin, centrin, pericentrin, and polypeptides recognized by the monoclonal antibodies MPM-2, 6C6, and C9 also recognize putative lower land plant MTOCs, indicating shared mechanisms of nucleation/organization in plants and animals. The most recent data from tubulin incorporation in vivo, mutants with altered MT organization, and molecular studies indicate the potential of these research tools in investigation of MTOCs in plants.

  14. Earliest land plants created modern levels of atmospheric oxygen.

    PubMed

    Lenton, Timothy M; Dahl, Tais W; Daines, Stuart J; Mills, Benjamin J W; Ozaki, Kazumi; Saltzman, Matthew R; Porada, Philipp

    2016-08-30

    The progressive oxygenation of the Earth's atmosphere was pivotal to the evolution of life, but the puzzle of when and how atmospheric oxygen (O2) first approached modern levels (∼21%) remains unresolved. Redox proxy data indicate the deep oceans were oxygenated during 435-392 Ma, and the appearance of fossil charcoal indicates O2 >15-17% by 420-400 Ma. However, existing models have failed to predict oxygenation at this time. Here we show that the earliest plants, which colonized the land surface from ∼470 Ma onward, were responsible for this mid-Paleozoic oxygenation event, through greatly increasing global organic carbon burial-the net long-term source of O2 We use a trait-based ecophysiological model to predict that cryptogamic vegetation cover could have achieved ∼30% of today's global terrestrial net primary productivity by ∼445 Ma. Data from modern bryophytes suggests this plentiful early plant material had a much higher molar C:P ratio (∼2,000) than marine biomass (∼100), such that a given weathering flux of phosphorus could support more organic carbon burial. Furthermore, recent experiments suggest that early plants selectively increased the flux of phosphorus (relative to alkalinity) weathered from rocks. Combining these effects in a model of long-term biogeochemical cycling, we reproduce a sustained +2‰ increase in the carbonate carbon isotope (δ(13)C) record by ∼445 Ma, and predict a corresponding rise in O2 to present levels by 420-400 Ma, consistent with geochemical data. This oxygen rise represents a permanent shift in regulatory regime to one where fire-mediated negative feedbacks stabilize high O2 levels.

  15. Earliest land plants created modern levels of atmospheric oxygen

    NASA Astrophysics Data System (ADS)

    Lenton, Timothy M.; Dahl, Tais W.; Daines, Stuart J.; Mills, Benjamin J. W.; Ozaki, Kazumi; Saltzman, Matthew R.; Porada, Philipp

    2016-08-01

    The progressive oxygenation of the Earth’s atmosphere was pivotal to the evolution of life, but the puzzle of when and how atmospheric oxygen (O2) first approached modern levels (˜21%) remains unresolved. Redox proxy data indicate the deep oceans were oxygenated during 435-392 Ma, and the appearance of fossil charcoal indicates O2 >15-17% by 420-400 Ma. However, existing models have failed to predict oxygenation at this time. Here we show that the earliest plants, which colonized the land surface from ˜470 Ma onward, were responsible for this mid-Paleozoic oxygenation event, through greatly increasing global organic carbon burial—the net long-term source of O2. We use a trait-based ecophysiological model to predict that cryptogamic vegetation cover could have achieved ˜30% of today’s global terrestrial net primary productivity by ˜445 Ma. Data from modern bryophytes suggests this plentiful early plant material had a much higher molar C:P ratio (˜2,000) than marine biomass (˜100), such that a given weathering flux of phosphorus could support more organic carbon burial. Furthermore, recent experiments suggest that early plants selectively increased the flux of phosphorus (relative to alkalinity) weathered from rocks. Combining these effects in a model of long-term biogeochemical cycling, we reproduce a sustained +2‰ increase in the carbonate carbon isotope (δ13C) record by ˜445 Ma, and predict a corresponding rise in O2 to present levels by 420-400 Ma, consistent with geochemical data. This oxygen rise represents a permanent shift in regulatory regime to one where fire-mediated negative feedbacks stabilize high O2 levels.

  16. Functional diversification of the kinesin-14 family in land plants.

    PubMed

    Gicking, Allison M; Swentowsky, Kyle W; Dawe, R Kelly; Qiu, Weihong

    2018-05-12

    In most eukaryotes, cytoplasmic dynein serves as the primary cytoskeletal motor for minus-end-directed processes along microtubules. However, land plants lack dynein, having instead a large number of kinesin-14s, which suggests that kinesin-14s may have evolved to fill the cellular niche left by dynein. In addition, land plants do not have centrosomes, but contain specialized microtubule-based structures called phragmoplasts that facilitate the formation of new cell walls following cell division. This Review aims to compile the evidence for functional diversification of kinesin-14s in land plants. Known functions include spindle morphogenesis, microtubule-based trafficking, nuclear migration, chloroplast distribution, and phragmoplast expansion. Plant kinesin-14s have also evolved direct roles in chromosome segregation in maize and novel biochemical features such as actin transport and processive motility in the homodimeric state. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  17. RNA editing in bryophytes and a molecular phylogeny of land plants.

    PubMed Central

    Malek, O; Lättig, K; Hiesel, R; Brennicke, A; Knoop, V

    1996-01-01

    RNA editing has been observed to date in all groups of vascular plants, but not in bryophytes. Its occurrence was therefore assumed to correlate with the evolution of tracheophytes. To gain more insight into both the phylogeny of early land plants and the evolution of mitochondrial RNA editing we have investigated a number of vascular and non-vascular plant species. Contrary to the belief that editing is absent from bryophytes, here we report mitochondrial RNA editing in cox3 mRNA of the liverwort Pellia epiphylla, the mosses Tetraphis pellucida and Ceratodon purpureus and the hornwort Anthroceros crispulus. RNA editing in plants consequently predates the evolution of tracheophytes. Editing is also found in the eusporangiate ferns Ophioglossum petiolatum and Angiopteris palmiformis, the whisk fern Tmesipteris elongata and the gnetopsid Ephedra gerardiana, but was not detected in Gnetum gnemon.cox3 mRNA of the lycopsid Isoetes lacustris shows the highest frequency of RNA editing ever observed in a plant, with 39% of all cytidine residues converted to uridines. The frequency of RNA editing correlates with the genomic GC content rather than with the phylogenetic position of a species. Phylogenetic trees derived from the slowly evolving mitochondrial sequences find external support from the assessments of classical systematics. Images PMID:8635473

  18. Divergence and Conservative Evolution of XTNX Genes in Land Plants.

    PubMed

    Zhang, Yan-Mei; Xue, Jia-Yu; Liu, Li-Wei; Sun, Xiao-Qin; Zhou, Guang-Can; Chen, Min; Shao, Zhu-Qing; Hang, Yue-Yu

    2017-01-01

    The Toll-interleukin-1 receptor (TIR) and Nucleotide-binding site (NBS) domains are two major components of the TIR-NBS-leucine-rich repeat family plant disease resistance genes. Extensive functional and evolutionary studies have been performed on these genes; however, the characterization of a small group of genes that are composed of atypical TIR and NBS domains, namely XTNX genes, is limited. The present study investigated this specific gene family by conducting genome-wide analyses of 59 green plant genomes. A total of 143 XTNX genes were identified in 51 of the 52 land plant genomes, whereas no XTNX gene was detected in any green algae genomes, which indicated that XTNX genes originated upon emergence of land plants. Phylogenetic analysis revealed that the ancestral XTNX gene underwent two rounds of ancient duplications in land plants, which resulted in the formation of clades I/II and clades IIa/IIb successively. Although clades I and IIb have evolved conservatively in angiosperms, the motif composition difference and sequence divergence at the amino acid level suggest that functional divergence may have occurred since the separation of the two clades. In contrast, several features of the clade IIa genes, including the absence in the majority of dicots, the long branches in the tree, the frequent loss of ancestral motifs, and the loss of expression in all detected tissues of Zea mays , all suggest that the genes in this lineage might have undergone pseudogenization. This study highlights that XTNX genes are a gene family originated anciently in land plants and underwent specific conservative pattern in evolution.

  19. Plant defences on land and in water: why are they so different?

    PubMed

    Vermeij, Geerat J

    2016-06-01

    Plants (attached photosynthesizing organisms) are eaten by a wide variety of herbivorous animals. Despite a vast literature on plant defence, contrasting patterns of antiherbivore adaptation among marine, freshwater and land plants have been little noticed, documented or understood. Here I show how the surrounding medium (water or air) affects not only the plants themselves, but also the sensory and locomotor capacities of herbivores and their predators, and I discuss patterns of defence and host specialization of plants and herbivores on land and in water. I analysed the literature on herbivory with special reference to mechanical defences and sensory cues emitted by plants. Spines, hairs, asymmetrically oriented features on plant surfaces, and visual and olfactory signals that confuse or repel herbivores are common in land plants but rare or absent in water-dwelling plants. Small terrestrial herbivores are more often host-specific than their aquatic counterparts. I propose that patterns of selection on terrestrial herbivores and plants differ from those on aquatic species. Land plants must often attract animal dispersers and pollinators that, like their herbivorous counterparts, require sophisticated locomotor and sensory abilities. Plants counter their attractiveness to animal helpers by evolving effective contact defences and long-distance cues that mislead or warn herbivores. The locomotor and sensory world of small aquatic herbivores is more limited. These characteristics result from the lower viscosity and density of air compared with water as well as from limitations on plant physiology and signal transmission in water. Evolutionary innovations have not eliminated the contrasts in the conditions of life between water and land. Plant defence can be understood fully when herbivores and their victims are considered in the broader context of other interactions among coexisting species and of the medium in which these interactions occur. © The Author 2016

  20. Earliest land plants created modern levels of atmospheric oxygen

    PubMed Central

    Lenton, Timothy M.; Dahl, Tais W.; Daines, Stuart J.; Mills, Benjamin J. W.; Ozaki, Kazumi; Saltzman, Matthew R.; Porada, Philipp

    2016-01-01

    The progressive oxygenation of the Earth’s atmosphere was pivotal to the evolution of life, but the puzzle of when and how atmospheric oxygen (O2) first approached modern levels (∼21%) remains unresolved. Redox proxy data indicate the deep oceans were oxygenated during 435–392 Ma, and the appearance of fossil charcoal indicates O2 >15–17% by 420–400 Ma. However, existing models have failed to predict oxygenation at this time. Here we show that the earliest plants, which colonized the land surface from ∼470 Ma onward, were responsible for this mid-Paleozoic oxygenation event, through greatly increasing global organic carbon burial—the net long-term source of O2. We use a trait-based ecophysiological model to predict that cryptogamic vegetation cover could have achieved ∼30% of today’s global terrestrial net primary productivity by ∼445 Ma. Data from modern bryophytes suggests this plentiful early plant material had a much higher molar C:P ratio (∼2,000) than marine biomass (∼100), such that a given weathering flux of phosphorus could support more organic carbon burial. Furthermore, recent experiments suggest that early plants selectively increased the flux of phosphorus (relative to alkalinity) weathered from rocks. Combining these effects in a model of long-term biogeochemical cycling, we reproduce a sustained +2‰ increase in the carbonate carbon isotope (δ13C) record by ∼445 Ma, and predict a corresponding rise in O2 to present levels by 420–400 Ma, consistent with geochemical data. This oxygen rise represents a permanent shift in regulatory regime to one where fire-mediated negative feedbacks stabilize high O2 levels. PMID:27528678

  1. Spatial-temporal variation of marginal land suitable for energy plants from 1990 to 2010 in China

    NASA Astrophysics Data System (ADS)

    Jiang, Dong; Hao, Mengmeng; Fu, Jingying; Zhuang, Dafang; Huang, Yaohuan

    2014-07-01

    Energy plants are the main source of bioenergy which will play an increasingly important role in future energy supplies. With limited cultivated land resources in China, the development of energy plants may primarily rely on the marginal land. In this study, based on the land use data from 1990 to 2010(every 5 years is a period) and other auxiliary data, the distribution of marginal land suitable for energy plants was determined using multi-factors integrated assessment method. The variation of land use type and spatial distribution of marginal land suitable for energy plants of different decades were analyzed. The results indicate that the total amount of marginal land suitable for energy plants decreased from 136.501 million ha to 114.225 million ha from 1990 to 2010. The reduced land use types are primarily shrub land, sparse forest land, moderate dense grassland and sparse grassland, and large variation areas are located in Guangxi, Tibet, Heilongjiang, Xinjiang and Inner Mongolia. The results of this study will provide more effective data reference and decision making support for the long-term planning of bioenergy resources.

  2. Land-use intensity and host plant identity interactively shape communities of arbuscular mycorrhizal fungi in roots of grassland plants.

    PubMed

    Vályi, Kriszta; Rillig, Matthias C; Hempel, Stefan

    2015-03-01

    We studied the effect of host plant identity and land-use intensity (LUI) on arbuscular mycorrhizal fungi (AMF, Glomeromycota) communities in roots of grassland plants. These are relevant factors for intraradical AMF communities in temperate grasslands, which are habitats where AMF are present in high abundance and diversity. In order to focus on fungi that directly interact with the plant at the time, we investigated root-colonizing communities. Our study sites represent an LUI gradient with different combinations of grazing, mowing, and fertilization. We used massively parallel multitag pyrosequencing to investigate AMF communities in a large number of root samples, while being able to track the identity of the host. We showed that host plants significantly differed in AMF community composition, while land use modified this effect in a plant species-specific manner. Communities in medium and low land-use sites were subsets of high land-use communities, suggesting a differential effect of land use on the dispersal of AMF species with different abundances and competitive abilities. We demonstrate that in these grasslands, there is a small group of highly abundant, generalist fungi which represent the dominating species in the AMF community. © 2014 The Authors New Phytologist © 2014 New Phytologist Trust.

  3. Spatial-temporal variation of marginal land suitable for energy plants from 1990 to 2010 in China

    PubMed Central

    Jiang, Dong; Hao, Mengmeng; Fu, Jingying; Zhuang, Dafang; Huang, Yaohuan

    2014-01-01

    Energy plants are the main source of bioenergy which will play an increasingly important role in future energy supplies. With limited cultivated land resources in China, the development of energy plants may primarily rely on the marginal land. In this study, based on the land use data from 1990 to 2010(every 5 years is a period) and other auxiliary data, the distribution of marginal land suitable for energy plants was determined using multi-factors integrated assessment method. The variation of land use type and spatial distribution of marginal land suitable for energy plants of different decades were analyzed. The results indicate that the total amount of marginal land suitable for energy plants decreased from 136.501 million ha to 114.225 million ha from 1990 to 2010. The reduced land use types are primarily shrub land, sparse forest land, moderate dense grassland and sparse grassland, and large variation areas are located in Guangxi, Tibet, Heilongjiang, Xinjiang and Inner Mongolia. The results of this study will provide more effective data reference and decision making support for the long-term planning of bioenergy resources. PMID:25056520

  4. Land Surface Modeling Applications for Famine Early Warning

    NASA Astrophysics Data System (ADS)

    McNally, A.; Verdin, J. P.; Peters-Lidard, C. D.; Arsenault, K. R.; Wang, S.; Kumar, S.; Shukla, S.; Funk, C. C.; Pervez, M. S.; Fall, G. M.; Karsten, L. R.

    2015-12-01

    AGU 2015 Fall Meeting Session ID#: 7598 Remote Sensing Applications for Water Resources Management Land Surface Modeling Applications for Famine Early Warning James Verdin, USGS EROS Christa Peters-Lidard, NASA GSFC Amy McNally, NASA GSFC, UMD/ESSIC Kristi Arsenault, NASA GSFC, SAIC Shugong Wang, NASA GSFC, SAIC Sujay Kumar, NASA GSFC, SAIC Shrad Shukla, UCSB Chris Funk, USGS EROS Greg Fall, NOAA Logan Karsten, NOAA, UCAR Famine early warning has traditionally required close monitoring of agro-climatological conditions, putting them in historical context, and projecting them forward to anticipate end-of-season outcomes. In recent years, it has become necessary to factor in the effects of a changing climate as well. There has also been a growing appreciation of the linkage between food security and water availability. In 2009, Famine Early Warning Systems Network (FEWS NET) science partners began developing land surface modeling (LSM) applications to address these needs. With support from the NASA Applied Sciences Program, an instance of the Land Information System (LIS) was developed to specifically support FEWS NET. A simple crop water balance model (GeoWRSI) traditionally used by FEWS NET took its place alongside the Noah land surface model and the latest version of the Variable Infiltration Capacity (VIC) model, and LIS data readers were developed for FEWS NET precipitation forcings (NOAA's RFE and USGS/UCSB's CHIRPS). The resulting system was successfully used to monitor and project soil moisture conditions in the Horn of Africa, foretelling poor crop outcomes in the OND 2013 and MAM 2014 seasons. In parallel, NOAA created another instance of LIS to monitor snow water resources in Afghanistan, which are an early indicator of water availability for irrigation and crop production. These successes have been followed by investment in LSM implementations to track and project water availability in Sub-Saharan Africa and Yemen, work that is now underway. Adoption of

  5. TAS3 miR390-dependent loci in non-vascular land plants: towards a comprehensive reconstruction of the gene evolutionary history.

    PubMed

    Morozov, Sergey Y; Milyutina, Irina A; Erokhina, Tatiana N; Ozerova, Liudmila V; Troitsky, Alexey V; Solovyev, Andrey G

    2018-01-01

    Trans-acting small interfering RNAs (ta-siRNAs) are transcribed from protein non-coding genomic TAS loci and belong to a plant-specific class of endogenous small RNAs. These siRNAs have been found to regulate gene expression in most taxa including seed plants, gymnosperms, ferns and mosses. In this study, bioinformatic and experimental PCR-based approaches were used as tools to analyze TAS3 and TAS6 loci in transcriptomes and genomic DNAs from representatives of evolutionary distant non-vascular plant taxa such as Bryophyta, Marchantiophyta and Anthocerotophyta. We revealed previously undiscovered TAS3 loci in plant classes Sphagnopsida and Anthocerotopsida, as well as TAS6 loci in Bryophyta classes Tetraphidiopsida, Polytrichopsida, Andreaeopsida and Takakiopsida. These data further unveil the evolutionary pathway of the miR390-dependent TAS3 loci in land plants. We also identified charophyte alga sequences coding for SUPPRESSOR OF GENE SILENCING 3 (SGS3), which is required for generation of ta-siRNAs in plants, and hypothesized that the appearance of TAS3-related sequences could take place at a very early step in evolutionary transition from charophyte algae to an earliest common ancestor of land plants.

  6. TAS3 miR390-dependent loci in non-vascular land plants: towards a comprehensive reconstruction of the gene evolutionary history

    PubMed Central

    Milyutina, Irina A.; Erokhina, Tatiana N.; Ozerova, Liudmila V.; Troitsky, Alexey V.; Solovyev, Andrey G.

    2018-01-01

    Trans-acting small interfering RNAs (ta-siRNAs) are transcribed from protein non-coding genomic TAS loci and belong to a plant-specific class of endogenous small RNAs. These siRNAs have been found to regulate gene expression in most taxa including seed plants, gymnosperms, ferns and mosses. In this study, bioinformatic and experimental PCR-based approaches were used as tools to analyze TAS3 and TAS6 loci in transcriptomes and genomic DNAs from representatives of evolutionary distant non-vascular plant taxa such as Bryophyta, Marchantiophyta and Anthocerotophyta. We revealed previously undiscovered TAS3 loci in plant classes Sphagnopsida and Anthocerotopsida, as well as TAS6 loci in Bryophyta classes Tetraphidiopsida, Polytrichopsida, Andreaeopsida and Takakiopsida. These data further unveil the evolutionary pathway of the miR390-dependent TAS3 loci in land plants. We also identified charophyte alga sequences coding for SUPPRESSOR OF GENE SILENCING 3 (SGS3), which is required for generation of ta-siRNAs in plants, and hypothesized that the appearance of TAS3-related sequences could take place at a very early step in evolutionary transition from charophyte algae to an earliest common ancestor of land plants. PMID:29682420

  7. Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE, a regulator of ABA responses unique to basal land plants and required for desiccation tolerance

    DOE PAGES

    Stevenson, Sean Ross; Kamisugi, Yasuko; Trinh, Chi H.; ...

    2016-05-18

    The anatomically simple plants that first colonized land must have acquired molecular and biochemical adaptations to drought stress. Abscisic acid (ABA) coordinates responses leading to desiccation tolerance in all land plants. We identified ABA nonresponsive mutants in the model bryophyte Physcomitrella patens and genotyped a segregating population to map and identify the ABA NON-RESPONSIVE (ANR) gene encoding a modular protein kinase comprising an N-terminal PAS domain, a central EDR domain, and a C-terminal MAPKKK-like domain. anr mutants fail to accumulate dehydration tolerance-associated gene products in response to drought, ABA, or osmotic stress and do not acquire ABA-dependent desiccation tolerance. Themore » crystal structure of the PAS domain, determined to 1.7-Å resolution, shows a conserved PAS-fold that dimerizes through a weak dimerization interface. Targeted mutagenesis of a conserved tryptophan residue within the PAS domain generates plants with ABA nonresponsive growth and strongly attenuated ABA-responsive gene expression, whereas deleting this domain retains a fully ABA-responsive phenotype. ANR orthologs are found in early-diverging land plant lineages and aquatic algae but are absent from more recently diverged vascular plants. Lastly, we propose that ANR genes represent an ancestral adaptation that enabled drought stress survival of the first terrestrial colonizers but were lost during land plant evolution.« less

  8. Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE, a regulator of ABA responses unique to basal land plants and required for desiccation tolerance

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Stevenson, Sean Ross; Kamisugi, Yasuko; Trinh, Chi H.

    The anatomically simple plants that first colonized land must have acquired molecular and biochemical adaptations to drought stress. Abscisic acid (ABA) coordinates responses leading to desiccation tolerance in all land plants. We identified ABA nonresponsive mutants in the model bryophyte Physcomitrella patens and genotyped a segregating population to map and identify the ABA NON-RESPONSIVE (ANR) gene encoding a modular protein kinase comprising an N-terminal PAS domain, a central EDR domain, and a C-terminal MAPKKK-like domain. anr mutants fail to accumulate dehydration tolerance-associated gene products in response to drought, ABA, or osmotic stress and do not acquire ABA-dependent desiccation tolerance. Themore » crystal structure of the PAS domain, determined to 1.7-Å resolution, shows a conserved PAS-fold that dimerizes through a weak dimerization interface. Targeted mutagenesis of a conserved tryptophan residue within the PAS domain generates plants with ABA nonresponsive growth and strongly attenuated ABA-responsive gene expression, whereas deleting this domain retains a fully ABA-responsive phenotype. ANR orthologs are found in early-diverging land plant lineages and aquatic algae but are absent from more recently diverged vascular plants. Lastly, we propose that ANR genes represent an ancestral adaptation that enabled drought stress survival of the first terrestrial colonizers but were lost during land plant evolution.« less

  9. Terrestrial-marine teleconnections in the Devonian: links between the evolution of land plants, weathering processes, and marine anoxic events

    PubMed Central

    Algeo, T. J.

    1998-01-01

    The Devonian Period was characterized by major changes in both the terrestrial biosphere, e.g. the evolution of trees and seed plants and the appearance of multi-storied forests, and in the marine biosphere, e.g. an extended biotic crisis that decimated tropical marine benthos, especially the stromatoporoid-tabulate coral reef community. Teleconnections between these terrestrial and marine events are poorly understood, but a key may lie in the role of soils as a geochemical interface between the lithosphere and atmosphere/hydrosphere, and the role of land plants in mediating weathering processes at this interface. The effectiveness of terrestrial floras in weathering was significantly enhanced as a consequence of increases in the size and geographic extent of vascular land plants during the Devonian. In this regard, the most important palaeobotanical innovations were (1) arborescence (tree stature), which increased maximum depths of root penetration and rhizoturbation, and (2) the seed habit, which freed land plants from reproductive dependence on moist lowland habitats and allowed colonization of drier upland and primary successional areas. These developments resulted in a transient intensification of pedogenesis (soil formation) and to large increases in the thickness and areal extent of soils. Enhanced chemical weathering may have led to increased riverine nutrient fluxes that promoted development of eutrophic conditions in epicontinental seaways, resulting in algal blooms, widespread bottomwater anoxia, and high sedimentary organic carbon fluxes. Long-term effects included drawdown of atmospheric pCO2 and global cooling, leading to a brief Late Devonian glaciation, which set the stage for icehouse conditions during the Permo-Carboniferous. This model provides a framework for understanding links between early land plant evolution and coeval marine anoxic and biotic events, but further testing of Devonian terrestrial-marine teleconnections is needed.

  10. Climate driven crop planting date in the ACME Land Model (ALM): Impacts on productivity and yield

    NASA Astrophysics Data System (ADS)

    Drewniak, B.

    2017-12-01

    Climate is one of the key drivers of crop suitability and productivity in a region. The influence of climate and weather on the growing season determine the amount of time crops spend in each growth phase, which in turn impacts productivity and, more importantly, yields. Planting date can have a strong influence on yields with earlier planting generally resulting in higher yields, a sensitivity that is also present in some crop models. Furthermore, planting date is already changing and may continue, especially if longer growing seasons caused by future climate change drive early (or late) planting decisions. Crop models need an accurate method to predict plant date to allow these models to: 1) capture changes in crop management to adapt to climate change, 2) accurately model the timing of crop phenology, and 3) improve crop simulated influences on carbon, nutrient, energy, and water cycles. Previous studies have used climate as a predictor for planting date. Climate as a plant date predictor has more advantages than fixed plant dates. For example, crop expansion and other changes in land use (e.g., due to changing temperature conditions), can be accommodated without additional model inputs. As such, a new methodology to implement a predictive planting date based on climate inputs is added to the Accelerated Climate Model for Energy (ACME) Land Model (ALM). The model considers two main sources of climate data important for planting: precipitation and temperature. This method expands the current temperature threshold planting trigger and improves the estimated plant date in ALM. Furthermore, the precipitation metric for planting, which synchronizes the crop growing season with the wettest months, allows tropical crops to be introduced to the model. This presentation will demonstrate how the improved model enhances the ability of ALM to capture planting date compared with observations. More importantly, the impact of changing the planting date and introducing tropical

  11. Differences in forest plant functional trait distributions across land-use and productivity gradients

    Treesearch

    Margaret M. Mayfield; John M. Dwyer; Loic Chalmandrier; Jessie A. Wells; Stephen P. Bonser; Carla P. Catterall; Fabrice DeClerck; Yi Ding; Jennifer M. Fraterrigo; Daniel J. Metcalfe; Cibele Queiroz; Peter A. Vesk; John W. Morgan

    2013-01-01

    • Premise of study: Plant functional traits are commonly used as proxies for plant responses to environmental challenges, yet few studies have explored how functional trait distributions differ across gradients of land-use change. By comparing trait distributions in intact forests with those across land-use change gradients, we can improve our understanding of the ways...

  12. Shape analysis of moss (Bryophyta) sporophytes: Insights into land plant evolution.

    PubMed

    Rose, Jeffrey P; Kriebel, Ricardo; Sytsma, Kenneth J

    2016-04-01

    The alternation of generations life cycle represents a key feature of land-plant evolution and has resulted in a diverse array of sporophyte forms and modifications in all groups of land plants. We test the hypothesis that evolution of sporangium (capsule) shape of the mosses-the second most diverse land-plant lineage-has been driven by differing physiological demands of life in diverse habitats. This study provides an important conceptual framework for analyzing the evolution of a single, homologous character in a continuous framework across a deep expanse of time, across all branches of the tree of life. We reconstruct ancestral sporangium shape and ancestral habitat on the largest phylogeny of mosses to date, and use phylogenetic generalized least squares regression to test the association between habitat and sporangium shape. In addition, we examine the association between shifts in sporangium shape and species diversification. We demonstrate that sporangium shape is convergent, under natural selection, and associated with habitat type, and that many shifts in speciation rate are associated with shifts in sporangium shape. Our results suggest that natural selection in different microhabitats results in the diversity of sporangium shape found in mosses, and that many increasing shifts in speciation rate result in changes in sporangium shape across their 480 million year history. Our framework provides a way to examine if diversification shifts in other land plants are also associated with massive changes in sporophyte form, among other morphological traits. © 2016 Botanical Society of America.

  13. Phylogenetics and evolution of Su(var)3-9 SET genes in land plants: rapid diversification in structure and function.

    PubMed

    Zhu, Xinyu; Ma, Hong; Chen, Zhiduan

    2011-03-09

    Plants contain numerous Su(var)3-9 homologues (SUVH) and related (SUVR) genes, some of which await functional characterization. Although there have been studies on the evolution of plant Su(var)3-9 SET genes, a systematic evolutionary study including major land plant groups has not been reported. Large-scale phylogenetic and evolutionary analyses can help to elucidate the underlying molecular mechanisms and contribute to improve genome annotation. Putative orthologs of plant Su(var)3-9 SET protein sequences were retrieved from major representatives of land plants. A novel clustering that included most members analyzed, henceforth referred to as core Su(var)3-9 homologues and related (cSUVHR) gene clade, was identified as well as all orthologous groups previously identified. Our analysis showed that plant Su(var)3-9 SET proteins possessed a variety of domain organizations, and can be classified into five types and ten subtypes. Plant Su(var)3-9 SET genes also exhibit a wide range of gene structures among different paralogs within a family, even in the regions encoding conserved PreSET and SET domains. We also found that the majority of SUVH members were intronless and formed three subclades within the SUVH clade. A detailed phylogenetic analysis of the plant Su(var)3-9 SET genes was performed. A novel deep phylogenetic relationship including most plant Su(var)3-9 SET genes was identified. Additional domains such as SAR, ZnF_C2H2 and WIYLD were early integrated into primordial PreSET/SET/PostSET domain organization. At least three classes of gene structures had been formed before the divergence of Physcomitrella patens (moss) from other land plants. One or multiple retroposition events might have occurred among SUVH genes with the donor genes leading to the V-2 orthologous group. The structural differences among evolutionary groups of plant Su(var)3-9 SET genes with different functions were described, contributing to the design of further experimental studies.

  14. Land-use intensification effects on functional properties in tropical plant communities.

    PubMed

    Carreño-Rocabado, Geovana; Peña-Claros, Marielos; Bongers, Frans; Díaz, Sandra; Quetier, Fabien; Chuviña, José; Poorter, Lourens

    2016-01-01

    There is consensus that plant diversity and ecosystem processes are negatively affected by land-use intensification (LUI), but, at the same time, there is empirical evidence that a large heterogeneity can be found in the responses. This heterogeneity is especially poorly understood in tropical ecosystems. We evaluated changes in community functional properties across five common land-use types in the wet tropics with different land-use intensity: mature forest, logged forest, secondary forest, agricultural land, and pastureland, located in the lowlands of Bolivia. For the dominant plant species, we measured 12 functional response traits related to their life history, acquisition and conservation of resources, plant domestication, and breeding. We used three single-trait metrics to describe community functional properties: community abundance-weighted mean (CWM) traits values, coefficient of variation, and kurtosis of distribution. The CWM of all 12 traits clearly responded to LUI. Overall, we found that an increase in LUI resulted in communities dominated by plants with acquisitive leaf trait values. However, contrary to our expectations, secondary forests had more conservative trait values (i.e., lower specific leaf area) than mature and logged forest, probably because they were dominated by palm species. Functional variation peaked at intermediate land-use intensity (high coefficient of variation and low kurtosis), which included secondary forest but, unexpectedly, also agricultural land, which is an intensely managed system. The high functional variation of these systems is due to a combination of how response traits (and species) are filtered out by biophysical filters and how management practices introduced a range of exotic species and their trait values into the local species pool. Our results showed that, at local scales and depending on prevailing environmental and management practices, LUI does not necessarily result in communities with more acquisitive

  15. An ancestral stomatal patterning module revealed in the non-vascular land plant Physcomitrella patens

    PubMed Central

    Chater, Caspar C.; Kamisugi, Yasuko

    2016-01-01

    The patterning of stomata plays a vital role in plant development and has emerged as a paradigm for the role of peptide signals in the spatial control of cellular differentiation. Research in Arabidopsis has identified a series of epidermal patterning factors (EPFs), which interact with an array of membrane-localised receptors and associated proteins (encoded by ERECTA and TMM genes) to control stomatal density and distribution. However, although it is well-established that stomata arose very early in the evolution of land plants, until now it has been unclear whether the established angiosperm stomatal patterning system represented by the EPF/TMM/ERECTA module reflects a conserved, universal mechanism in the plant kingdom. Here, we use molecular genetics to show that the moss Physcomitrella patens has conserved homologues of angiosperm EPF, TMM and at least one ERECTA gene that function together to permit the correct patterning of stomata and that, moreover, elements of the module retain function when transferred to Arabidopsis. Our data characterise the stomatal patterning system in an evolutionarily distinct branch of plants and support the hypothesis that the EPF/TMM/ERECTA module represents an ancient patterning system. PMID:27407102

  16. Marine algae and land plants share conserved phytochrome signaling systems

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Duanmu, Deqiang; Bachy, Charles; Sudek, Sebastian

    Phytochrome photosensors control a vast gene network in streptophyte plants, acting as master regulators of diverse growth and developmental processes throughout the life cycle. In contrast with their absence in known chlorophyte algal genomes and most sequenced prasinophyte algal genomes, a phytochrome is found in Micromonas pusilla, a widely distributed marine picoprasinophyte (<2 µm cell diameter). Together with phytochromes identified from other prasinophyte lineages, we establish that prasinophyte and streptophyte phytochromes share core light-input and signaling-output domain architectures except for the loss of C-terminal response regulator receiver domains in the streptophyte phytochrome lineage. Phylogenetic reconstructions robustly support the presence ofmore » phytochrome in the common progenitor of green algae and land plants. These analyses reveal a monophyletic clade containing streptophyte, prasinophyte, cryptophyte, and glaucophyte phytochromes implying an origin in the eukaryotic ancestor of the Archaeplastida. Transcriptomic measurements reveal diurnal regulation of phytochrome and bilin chromophore biosynthetic genes in Micromonas. The expression of these genes precedes both light-mediated phytochrome redistribution from the cytoplasm to the nucleus and increased expression of photosynthesis-associated genes. Prasinophyte phytochromes perceive wavelengths of light transmitted farther through seawater than the red/far-red light sensed by land plant phytochromes. Prasinophyte phytochromes also retain light-regulated histidine kinase activity lost in the streptophyte phytochrome lineage. Our studies demonstrate that light-mediated nuclear translocation of phytochrome predates the emergence of land plants and likely represents a widespread signaling mechanism in unicellular algae.« less

  17. Marine algae and land plants share conserved phytochrome signaling systems

    DOE PAGES

    Duanmu, Deqiang; Bachy, Charles; Sudek, Sebastian; ...

    2014-09-29

    Phytochrome photosensors control a vast gene network in streptophyte plants, acting as master regulators of diverse growth and developmental processes throughout the life cycle. In contrast with their absence in known chlorophyte algal genomes and most sequenced prasinophyte algal genomes, a phytochrome is found in Micromonas pusilla, a widely distributed marine picoprasinophyte (<2 µm cell diameter). Together with phytochromes identified from other prasinophyte lineages, we establish that prasinophyte and streptophyte phytochromes share core light-input and signaling-output domain architectures except for the loss of C-terminal response regulator receiver domains in the streptophyte phytochrome lineage. Phylogenetic reconstructions robustly support the presence ofmore » phytochrome in the common progenitor of green algae and land plants. These analyses reveal a monophyletic clade containing streptophyte, prasinophyte, cryptophyte, and glaucophyte phytochromes implying an origin in the eukaryotic ancestor of the Archaeplastida. Transcriptomic measurements reveal diurnal regulation of phytochrome and bilin chromophore biosynthetic genes in Micromonas. The expression of these genes precedes both light-mediated phytochrome redistribution from the cytoplasm to the nucleus and increased expression of photosynthesis-associated genes. Prasinophyte phytochromes perceive wavelengths of light transmitted farther through seawater than the red/far-red light sensed by land plant phytochromes. Prasinophyte phytochromes also retain light-regulated histidine kinase activity lost in the streptophyte phytochrome lineage. Our studies demonstrate that light-mediated nuclear translocation of phytochrome predates the emergence of land plants and likely represents a widespread signaling mechanism in unicellular algae.« less

  18. Symbiotic fungal associations in 'lower' land plants.

    PubMed Central

    Read, D J; Ducket, J G; Francis, R; Ligron, R; Russell, A

    2000-01-01

    An analysis of the current state of knowledge of symbiotic fungal associations in 'lower' plants is provided. Three fungal phyla, the Zygomycota, Ascomycota and Basidiomycota, are involved in forming these associations, each producing a distinctive suite of structural features in well-defined groups of 'lower' plants. Among the 'lower' plants only mosses and Equisetum appear to lack one or other of these types of association. The salient features of the symbioses produced by each fungal group are described and the relationships between these associations and those formed by the same or related fungi in 'higher' plants are discussed. Particular consideration is given to the question of the extent to which root fungus associations in 'lower' plants are analogous to 'mycorrhizas' of 'higher' plants and the need for analysis of the functional attributes of these symbioses is stressed. Zygomycetous fungi colonize a wide range of extant lower land plants (hornworts, many hepatics, lycopods, Ophioglossales, Psilotales and Gleicheniaceae), where they often produce structures analogous to those seen in the vesicular-arbuscular (VA) mycorrhizas of higher plants, which are formed by members of the order Glomales. A preponderance of associations of this kind is in accordance with palaeohbotanical and molecular evidence indicating that glomalean fungi produced the archetypal symbioses with the first plants to emerge on to land. It is shown, probably for the first time, that glomalean fungi forming typical VA mycorrhiza with a higher plant (Plantago lanceolata) can colonize a thalloid liverwort (Pellia epiphylla), producing arbuscules and vesicles in the hepatic. The extent to which these associations, which are structurally analogous to mycorrhizas, have similar functions remains to be evaluated. Ascomycetous associations are found in a relatively small number of families of leafy liverworts. The structural features of the fungal colonization of rhizoids and underground axes of

  19. Symbiotic fungal associations in 'lower' land plants.

    PubMed

    Read, D J; Ducket, J G; Francis, R; Ligron, R; Russell, A

    2000-06-29

    An analysis of the current state of knowledge of symbiotic fungal associations in 'lower' plants is provided. Three fungal phyla, the Zygomycota, Ascomycota and Basidiomycota, are involved in forming these associations, each producing a distinctive suite of structural features in well-defined groups of 'lower' plants. Among the 'lower' plants only mosses and Equisetum appear to lack one or other of these types of association. The salient features of the symbioses produced by each fungal group are described and the relationships between these associations and those formed by the same or related fungi in 'higher' plants are discussed. Particular consideration is given to the question of the extent to which root fungus associations in 'lower' plants are analogous to 'mycorrhizas' of 'higher' plants and the need for analysis of the functional attributes of these symbioses is stressed. Zygomycetous fungi colonize a wide range of extant lower land plants (hornworts, many hepatics, lycopods, Ophioglossales, Psilotales and Gleicheniaceae), where they often produce structures analogous to those seen in the vesicular-arbuscular (VA) mycorrhizas of higher plants, which are formed by members of the order Glomales. A preponderance of associations of this kind is in accordance with palaeohbotanical and molecular evidence indicating that glomalean fungi produced the archetypal symbioses with the first plants to emerge on to land. It is shown, probably for the first time, that glomalean fungi forming typical VA mycorrhiza with a higher plant (Plantago lanceolata) can colonize a thalloid liverwort (Pellia epiphylla), producing arbuscules and vesicles in the hepatic. The extent to which these associations, which are structurally analogous to mycorrhizas, have similar functions remains to be evaluated. Ascomycetous associations are found in a relatively small number of families of leafy liverworts. The structural features of the fungal colonization of rhizoids and underground axes of

  20. On the Growth and Detectability of Land Plants on Habitable Planets around M Dwarfs

    NASA Astrophysics Data System (ADS)

    Cui, Duo; Tian, Feng; Wang, Yuwei; Li, Changshen; Yu, Chaoqing; Yu, Le

    2017-12-01

    One signature of life on Earth is the vegetation red edge (VRE) feature of land plants, a dramatic change of reflectivity at wavelength near 0.7 μm. Potentially habitable planets around M dwarfs are tidally locked, which can limit the distribution of land plants. In this study, we used a biogeochemical model to investigate the distribution of land plants on potentially habitable planets around M dwarfs driven by climate data produced in a general circulation model (GCM). When considering the effects of clouds, the observation time needed for VRE detection on nearby p = 1 exoplanets around nearby M dwarfs is on the order of days using a 25 m2 telescope if a large continent faces Earth during observations. For p = 1.5 exoplanets, the detection time could be similar if land plants developed the capability to endure a dark/cold environment for extended periods of time and the continent configuration favors observations. Our analysis suggests that hypothetical exovegetation VRE features are easier to detect than Earth vegetation and that VRE detection is possible for nearby exoplanets even under cloudy conditions.

  1. Diversification of land plants: insights from a family-level phylogenetic analysis

    PubMed Central

    2011-01-01

    Background Some of the evolutionary history of land plants has been documented based on the fossil record and a few broad-scale phylogenetic analyses, especially focusing on angiosperms and ferns. Here, we reconstructed phylogenetic relationships among all 706 families of land plants using molecular data. We dated the phylogeny using multiple fossils and a molecular clock technique. Applying various tests of diversification that take into account topology, branch length, numbers of extant species as well as extinction, we evaluated diversification rates through time. We also compared these diversification profiles against the distribution of the climate modes of the Phanerozoic. Results We found evidence for the radiations of ferns and mosses in the shadow of angiosperms coinciding with the rather warm Cretaceous global climate. In contrast, gymnosperms and liverworts show a signature of declining diversification rates during geological time periods of cool global climate. Conclusions This broad-scale phylogenetic analysis helps to reveal the successive waves of diversification that made up the diversity of land plants we see today. Both warm temperatures and wet climate may have been necessary for the rise of the diversity under a successive lineage replacement scenario. PMID:22103931

  2. Diversification of land plants: insights from a family-level phylogenetic analysis.

    PubMed

    Fiz-Palacios, Omar; Schneider, Harald; Heinrichs, Jochen; Savolainen, Vincent

    2011-11-21

    Some of the evolutionary history of land plants has been documented based on the fossil record and a few broad-scale phylogenetic analyses, especially focusing on angiosperms and ferns. Here, we reconstructed phylogenetic relationships among all 706 families of land plants using molecular data. We dated the phylogeny using multiple fossils and a molecular clock technique. Applying various tests of diversification that take into account topology, branch length, numbers of extant species as well as extinction, we evaluated diversification rates through time. We also compared these diversification profiles against the distribution of the climate modes of the Phanerozoic. We found evidence for the radiations of ferns and mosses in the shadow of angiosperms coinciding with the rather warm Cretaceous global climate. In contrast, gymnosperms and liverworts show a signature of declining diversification rates during geological time periods of cool global climate. This broad-scale phylogenetic analysis helps to reveal the successive waves of diversification that made up the diversity of land plants we see today. Both warm temperatures and wet climate may have been necessary for the rise of the diversity under a successive lineage replacement scenario.

  3. 32 CFR 643.22 - Policy-Public safety: Requirement for early identification of lands containing dangerous materials.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 32 National Defense 4 2010-07-01 2010-07-01 true Policy-Public safety: Requirement for early identification of lands containing dangerous materials. 643.22 Section 643.22 National Defense Department of...—Public safety: Requirement for early identification of lands containing dangerous materials. (a) DA will...

  4. 32 CFR 643.22 - Policy-Public safety: Requirement for early identification of lands containing dangerous materials.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 4 2011-07-01 2011-07-01 false Policy-Public safety: Requirement for early identification of lands containing dangerous materials. 643.22 Section 643.22 National Defense Department of...—Public safety: Requirement for early identification of lands containing dangerous materials. (a) DA will...

  5. DNA methylation dynamics during early plant life.

    PubMed

    Bouyer, Daniel; Kramdi, Amira; Kassam, Mohamed; Heese, Maren; Schnittger, Arp; Roudier, François; Colot, Vincent

    2017-09-25

    Cytosine methylation is crucial for gene regulation and silencing of transposable elements in mammals and plants. While this epigenetic mark is extensively reprogrammed in the germline and early embryos of mammals, the extent to which DNA methylation is reset between generations in plants remains largely unknown. Using Arabidopsis as a model, we uncovered distinct DNA methylation dynamics over transposable element sequences during the early stages of plant development. Specifically, transposable elements and their relics show invariably high methylation at CG sites but increasing methylation at CHG and CHH sites. This non-CG methylation culminates in mature embryos, where it reaches saturation for a large fraction of methylated CHH sites, compared to the typical 10-20% methylation level observed in seedlings or adult plants. Moreover, the increase in CHH methylation during embryogenesis matches the hypomethylated state in the early endosperm. Finally, we show that interfering with the embryo-to-seedling transition results in the persistence of high CHH methylation levels after germination, specifically over sequences that are targeted by the RNA-directed DNA methylation (RdDM) machinery. Our findings indicate the absence of extensive resetting of DNA methylation patterns during early plant life and point instead to an important role of RdDM in reinforcing DNA methylation of transposable element sequences in every cell of the mature embryo. Furthermore, we provide evidence that this elevated RdDM activity is a specific property of embryogenesis.

  6. Planting Jatropha curcas on Constrained Land: Emission and Effects from Land Use Change

    PubMed Central

    Firdaus, M. S.; Husni, M. H. A.

    2012-01-01

    A study was carried out to assess carbon emission and carbon loss caused from land use change (LUC) of converting a wasteland into a Jatropha curcas plantation. The study was conducted for 12 months at a newly established Jatropha curcas plantation in Port Dickson, Malaysia. Assessments of soil carbon dioxide (CO2) flux, changes of soil total carbon and plant biomass loss and growth were made on the wasteland and on the established plantation to determine the effects of land preparation (i.e., tilling) and removal of the wasteland's native vegetation. Overall soil CO2 flux showed no significant difference (P < 0.05) between the two plots while no significant changes (P < 0.05) on soil total carbon at both plots were detected. It took 1.5 years for the growth of Jatropha curcas to recover the biomass carbon stock lost during land conversion. As far as the present study is concerned, converting wasteland to Jatropha curcas showed no adverse effects on the loss of carbon from soil and biomass and did not exacerbate soil respiration. PMID:22545018

  7. Enhancement of Late Successional Plants on Ex-Arable Land by Soil Inoculations

    PubMed Central

    Carbajo, Vanesa; den Braber, Bowy; van der Putten, Wim H.; De Deyn, Gerlinde B.

    2011-01-01

    Restoration of species-rich grasslands on ex-arable land can help the conservation of biodiversity but faces three big challenges: absence of target plant propagules, high residual soil fertility and restoration of soil communities. Seed additions and top soil removal can solve some of these constraints, but restoring beneficial biotic soil conditions remains a challenge. Here we test the hypotheses that inoculation of soil from late secondary succession grasslands in arable receptor soil enhances performance of late successional plants, especially after top soil removal but pending on the added dose. To test this we grew mixtures of late successional plants in arable top (organic) soil or in underlying mineral soil mixed with donor soil in small or large proportions. Donor soils were collected from different grasslands that had been under restoration for 5 to 41 years, or from semi-natural grassland that has not been used intensively. Donor soil addition, especially when collected from older restoration sites, increased plant community biomass without altering its evenness. In contrast, addition of soil from semi-natural grassland promoted plant community evenness, and hence its diversity, but reduced community biomass. Effects of donor soil additions were stronger in mineral than in organic soil and larger with bigger proportions added. The variation in plant community composition was explained best by the abundances of nematodes, ergosterol concentration and soil pH. We show that in controlled conditions inoculation of soil from secondary succession grassland into ex-arable land can strongly promote target plant species, and that the role of soil biota in promoting target plant species is greatest when added after top soil removal. Together our results point out that transplantation of later secondary succession soil can promote grassland restoration on ex-arable land. PMID:21760929

  8. Plant and root endophyte assembly history: interactive effects on native and exotic plants.

    PubMed

    Sikes, Benjamin A; Hawkes, Christine V; Fukami, Tadashi

    2016-02-01

    Differences in the arrival timing of plants and soil biota may result in different plant communities through priority effects, potentially affecting the success of native vs. exotic plants, but experimental evidence is largely lacking. We conducted a greenhouse experiment to investigate whether the assembly history of plants and fungal root endophytes could interact to influence plant emergence and biomass. We introduced a grass species and eight fungal species from one of three land-use types (undisturbed, disturbed, or pasture sites in a Florida scrubland) in factorial combinations. We then introduced all plants and fungi from the other land-use types 2 weeks later. Plant emergence was monitored for 6 months, and final plant biomass and fungal species composition assessed. The emergence and growth of the exotic Melinis repens and the native Schizacharyium niveum were affected negatively when introduced early with their "home" fungi, but early introduction of a different plant species or fungi from a different site type eliminated these negative effects, providing evidence for interactive priority effects. Interactive effects of plant and fungal arrival history may be an overlooked determinant of plant community structure and may provide an effective management tool to inhibit biological invasion and aid ecosystem restoration.

  9. Arctic plant diversity in the Early Eocene greenhouse

    PubMed Central

    Harrington, Guy J.; Eberle, Jaelyn; Le-Page, Ben A.; Dawson, Mary; Hutchison, J. Howard

    2012-01-01

    For the majority of the Early Caenozoic, a remarkable expanse of humid, mesothermal to temperate forests spread across Northern Polar regions that now contain specialized plant and animal communities adapted to life in extreme environments. Little is known on the taxonomic diversity of Arctic floras during greenhouse periods of the Caenozoic. We show for the first time that plant richness in the globally warm Early Eocene (approx. 55–52 Myr) in the Canadian High Arctic (76° N) is comparable with that approximately 3500 km further south at mid-latitudes in the US western interior (44–47° N). Arctic Eocene pollen floras are most comparable in richness with today's forests in the southeastern United States, some 5000 km further south of the Arctic. Nearly half of the Eocene, Arctic plant taxa are endemic and the richness of pollen floras implies significant patchiness to the vegetation type and clear regional richness of angiosperms. The reduced latitudinal diversity gradient in Early Eocene North American plant species demonstrates that extreme photoperiod in the Arctic did not limit taxonomic diversity of plants. PMID:22072610

  10. The evolution of the land plant life cycle.

    PubMed

    Niklas, Karl J; Kutschera, Ulrich

    2010-01-01

    The extant land plants are unique among the monophyletic clade of photosynthetic eukaryotes, which consists of the green algae (chlorophytes), the charophycean algae (charophytes), numerous groups of unicellular algae (prasinophytes) and the embryophytes, by possessing, firstly, a sexual life cycle characterized by an alternation between a haploid, gametophytic and a diploid, sporophytic multicellular generation; secondly, the formation of egg cells within multicellular structures called archegonia; and, thirdly, the retention of the zygote and diploid sporophyte embryo within the archegonium. We review the developmental, paleobotanical and molecular evidence indicating that: the embryophytes descended from a charophyte-like ancestor; this common ancestor had a life cycle with only a haploid multicellular generation; and the most ancient (c. 410 Myr old) land plants (e.g. Cooksonia, Rhynia and Zosterophyllum) had a dimorphic life cycle (i.e. their haploid and diploid generations were morphologically different). On the basis of these findings, we suggest that the multicellular reproductive structures of extant charophytes and embryophytes are developmentally homologous, and that those of the embryophytes evolved by virtue of the co-option and re-deployment of ancient algal homeodomain gene networks.

  11. On the Growth and Detectability of Land Plants on Habitable Planets around M Dwarfs.

    PubMed

    Cui, Duo; Tian, Feng; Wang, Yuwei; Li, Changshen; Yu, Chaoqing; Yu, Le

    2017-12-01

    One signature of life on Earth is the vegetation red edge (VRE) feature of land plants, a dramatic change of reflectivity at wavelength near 0.7 μm. Potentially habitable planets around M dwarfs are tidally locked, which can limit the distribution of land plants. In this study, we used a biogeochemical model to investigate the distribution of land plants on potentially habitable planets around M dwarfs driven by climate data produced in a general circulation model (GCM). When considering the effects of clouds, the observation time needed for VRE detection on nearby p = 1 exoplanets around nearby M dwarfs is on the order of days using a 25 m 2 telescope if a large continent faces Earth during observations. For p = 1.5 exoplanets, the detection time could be similar if land plants developed the capability to endure a dark/cold environment for extended periods of time and the continent configuration favors observations. Our analysis suggests that hypothetical exovegetation VRE features are easier to detect than Earth vegetation and that VRE detection is possible for nearby exoplanets even under cloudy conditions. Key Words: Vegetation red edge-Exoplanets-M dwarfs-Biosignature detection. Astrobiology 17, 1219-1232.

  12. Late Palaeozoic plants.

    PubMed

    Feng, Zhuo

    2017-09-11

    Land plants are one of the major constituents of terrestrial ecosystems on Earth, and play an irreplaceable role in human activities today. If we are to understand the extant plants, it is imperative that we have some understanding of the fossil plants from the deep geological past, particularly those that occurred during their early evolutionary history, in the late Palaeozoic. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Land-Use Requirements for Solar Power Plants in the United States

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ong, S.; Campbell, C.; Denholm, P.

    2013-06-01

    This report provides data and analysis of the land use associated with utility-scale ground-mounted solar facilities, defined as installations greater than 1 MW. We begin by discussing standard land-use metrics as established in the life-cycle assessment literature and then discuss their applicability to solar power plants. We present total and direct land-use results for various solar technologies and system configurations, on both a capacity and an electricity-generation basis. The total area corresponds to all land enclosed by the site boundary. The direct area comprises land directly occupied by solar arrays, access roads, substations, service buildings, and other infrastructure. As ofmore » the third quarter of 2012, the solar projects we analyze represent 72% of installed and under-construction utility-scale PV and CSP capacity in the United States.« less

  14. Phylogeny and Expression Analyses Reveal Important Roles for Plant PKS III Family during the Conquest of Land by Plants and Angiosperm Diversification

    PubMed Central

    Xie, Lulu; Liu, Pingli; Zhu, Zhixin; Zhang, Shifan; Zhang, Shujiang; Li, Fei; Zhang, Hui; Li, Guoliang; Wei, Yunxiao; Sun, Rifei

    2016-01-01

    played a critical role in the ancient conquest of the land by early plants and angiosperm diversification. PMID:27625671

  15. Risk-based design of process plants with regard to domino effects and land use planning.

    PubMed

    Khakzad, Nima; Reniers, Genserik

    2015-12-15

    Land use planning (LUP) as an effective and crucial safety measure has widely been employed by safety experts and decision makers to mitigate off-site risks posed by major accidents. Accordingly, the concept of LUP in chemical plants has traditionally been considered from two perspectives: (i) land developments around existing chemical plants considering potential off-site risks posed by major accidents and (ii) development of existing chemical plants considering nearby land developments and the level of additional off-site risks the land developments would be exposed to. However, the attempts made to design chemical plants with regard to LUP requirements have been few, most of which have neglected the role of domino effects in risk analysis of major accidents. To overcome the limitations of previous work, first, we developed a Bayesian network methodology to calculate both on-site and off-site risks of major accidents while taking domino effects into account. Second, we combined the results of risk analysis with Analytic Hierarchical Process to design an optimal layout for which the levels of on-site and off-site risks would be minimum. Copyright © 2015 Elsevier B.V. All rights reserved.

  16. Biodiverse planting for carbon and biodiversity on indigenous land.

    PubMed

    Renwick, Anna R; Robinson, Catherine J; Martin, Tara G; May, Tracey; Polglase, Phil; Possingham, Hugh P; Carwardine, Josie

    2014-01-01

    Carbon offset mechanisms have been established to mitigate climate change through changes in land management. Regulatory frameworks enable landowners and managers to generate saleable carbon credits on domestic and international markets. Identifying and managing the associated co-benefits and dis-benefits involved in the adoption of carbon offset projects is important for the projects to contribute to the broader goal of sustainable development and the provision of benefits to the local communities. So far it has been unclear how Indigenous communities can benefit from such initiatives. We provide a spatial analysis of the carbon and biodiversity potential of one offset method, planting biodiverse native vegetation, on Indigenous land across Australia. We discover significant potential for opportunities for Indigenous communities to achieve carbon sequestration and biodiversity goals through biodiverse plantings, largely in southern and eastern Australia, but the economic feasibility of these projects depend on carbon market assumptions. Our national scale cost-effectiveness analysis is critical to enable Indigenous communities to maximise the benefits available to them through participation in carbon offset schemes.

  17. Biodiverse Planting for Carbon and Biodiversity on Indigenous Land

    PubMed Central

    Renwick, Anna R.; Robinson, Catherine J.; Martin, Tara G.; May, Tracey; Polglase, Phil; Possingham, Hugh P.; Carwardine, Josie

    2014-01-01

    Carbon offset mechanisms have been established to mitigate climate change through changes in land management. Regulatory frameworks enable landowners and managers to generate saleable carbon credits on domestic and international markets. Identifying and managing the associated co-benefits and dis-benefits involved in the adoption of carbon offset projects is important for the projects to contribute to the broader goal of sustainable development and the provision of benefits to the local communities. So far it has been unclear how Indigenous communities can benefit from such initiatives. We provide a spatial analysis of the carbon and biodiversity potential of one offset method, planting biodiverse native vegetation, on Indigenous land across Australia. We discover significant potential for opportunities for Indigenous communities to achieve carbon sequestration and biodiversity goals through biodiverse plantings, largely in southern and eastern Australia, but the economic feasibility of these projects depend on carbon market assumptions. Our national scale cost-effectiveness analysis is critical to enable Indigenous communities to maximise the benefits available to them through participation in carbon offset schemes. PMID:24637736

  18. 32 CFR 643.22 - Policy-Public safety: Requirement for early identification of lands containing dangerous materials.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... identification of lands containing dangerous materials. 643.22 Section 643.22 National Defense Department of...—Public safety: Requirement for early identification of lands containing dangerous materials. (a) DA will... lands by explosives, military chemical or other dangerous materials. (c) Procedures with respect to...

  19. 32 CFR 643.22 - Policy-Public safety: Requirement for early identification of lands containing dangerous materials.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... identification of lands containing dangerous materials. 643.22 Section 643.22 National Defense Department of...—Public safety: Requirement for early identification of lands containing dangerous materials. (a) DA will... lands by explosives, military chemical or other dangerous materials. (c) Procedures with respect to...

  20. 32 CFR 643.22 - Policy-Public safety: Requirement for early identification of lands containing dangerous materials.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... identification of lands containing dangerous materials. 643.22 Section 643.22 National Defense Department of...—Public safety: Requirement for early identification of lands containing dangerous materials. (a) DA will... lands by explosives, military chemical or other dangerous materials. (c) Procedures with respect to...

  1. Land-use history alters contemporary insect herbivore community composition and decouples plant-herbivore relationships

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hahn, Philip G.; Orrock, John L.

    1. Past land use can create altered soil conditions and plant communities that persist for decades, although the effects of these altered conditions on consumers are rarely investigated. 2. Using a large-scale field study at 36 sites in longleaf pine (Pinus palustris) woodlands, we examined whether historic agricultural land use leads to differences in the abundance and community composition of insect herbivores (grasshoppers, families Acrididae and Tettigoniidae). 3. We measured the cover of six plant functional groups and several environmental variables to determine whether historic agricultural land use affects the relationships between plant cover or environmental conditions and grasshopper assemblages.more » 4. Land-use history had taxa-specific effects and interacted with herbaceous plant cover to alter grasshopper abundances, leading to significant changes in community composition. Abundance of most grasshopper taxa increased with herbaceous cover in woodlands with no history of agriculture, but there was no relationship in post-agricultural woodlands. We also found that grasshopper abundance was negatively correlated with leaf litter cover. Soil hardness was greater in post-agricultural sites (i.e. more compacted) and was associated with grasshopper community composition. Both herbaceous cover and leaf litter cover are influenced by fire frequency, suggesting a potential indirect role of fire on grasshopper assemblages. 5. Our results demonstrate that historic land use may create persistent differences in the composition of grasshopper assemblages, while contemporary disturbances (e.g. prescribed fire) may be important for determining the abundance of grasshoppers, largely through the effect of fire on plants and leaf litter. Therefore, our results suggest that changes in the contemporary management regimes (e.g. increasing prescribed fire) may not be sufficient to shift the structure of grasshopper communities in post-agricultural sites towards

  2. Land-use history alters contemporary insect herbivore community composition and decouples plant-herbivore relationships

    DOE PAGES

    Hahn, Philip G.; Orrock, John L.

    2014-11-23

    1. Past land use can create altered soil conditions and plant communities that persist for decades, although the effects of these altered conditions on consumers are rarely investigated. 2. Using a large-scale field study at 36 sites in longleaf pine (Pinus palustris) woodlands, we examined whether historic agricultural land use leads to differences in the abundance and community composition of insect herbivores (grasshoppers, families Acrididae and Tettigoniidae). 3. We measured the cover of six plant functional groups and several environmental variables to determine whether historic agricultural land use affects the relationships between plant cover or environmental conditions and grasshopper assemblages.more » 4. Land-use history had taxa-specific effects and interacted with herbaceous plant cover to alter grasshopper abundances, leading to significant changes in community composition. Abundance of most grasshopper taxa increased with herbaceous cover in woodlands with no history of agriculture, but there was no relationship in post-agricultural woodlands. We also found that grasshopper abundance was negatively correlated with leaf litter cover. Soil hardness was greater in post-agricultural sites (i.e. more compacted) and was associated with grasshopper community composition. Both herbaceous cover and leaf litter cover are influenced by fire frequency, suggesting a potential indirect role of fire on grasshopper assemblages. 5. Our results demonstrate that historic land use may create persistent differences in the composition of grasshopper assemblages, while contemporary disturbances (e.g. prescribed fire) may be important for determining the abundance of grasshoppers, largely through the effect of fire on plants and leaf litter. Therefore, our results suggest that changes in the contemporary management regimes (e.g. increasing prescribed fire) may not be sufficient to shift the structure of grasshopper communities in post-agricultural sites towards

  3. Succession Influences Wild Bees in a Temperate Forest Landscape: The Value of Early Successional Stages in Naturally Regenerated and Planted Forests

    PubMed Central

    Taki, Hisatomo; Okochi, Isamu; Okabe, Kimiko; Inoue, Takenari; Goto, Hideaki; Matsumura, Takeshi; Makino, Shun'ichi

    2013-01-01

    In many temperate terrestrial forest ecosystems, both natural human disturbances drive the reestablishment of forests. Succession in plant communities, in addition to reforestation following the creation of open sites through harvesting or natural disturbances, can affect forest faunal assemblages. Wild bees perform an important ecosystem function in human-altered and natural or seminatural ecosystems, as they are essential pollinators for both crops and wild flowering plants. To maintain high abundance and species richness for pollination services, it is important to conserve and create seminatural and natural land cover with optimal successional stages for wild bees. We examined the effects of forest succession on wild bees. In particular, we evaluated the importance of early successional stages for bees, which has been suspected but not previously demonstrated. A range of successional stages, between 1 and 178 years old, were examined in naturally regenerated and planted forests. In total 4465 wild bee individuals, representing 113 species, were captured. Results for total bees, solitary bees, and cleptoparasitic bees in both naturally regenerated and planted conifer forests indicated a higher abundance and species richness in the early successional stages. However, higher abundance and species richness of social bees in naturally regenerated forest were observed as the successional stages progressed, whereas the abundance of social bees in conifer planted forest showed a concave-shaped relationship when plotted. The results suggest that early successional stages of both naturally regenerated and conifer planted forest maintain a high abundance and species richness of solitary bees and their cleptoparasitic bees, although social bees respond differently in the early successional stages. This may imply that, in some cases, active forest stand management policies, such as the clear-cutting of planted forests for timber production, would create early successional

  4. Succession influences wild bees in a temperate forest landscape: the value of early successional stages in naturally regenerated and planted forests.

    PubMed

    Taki, Hisatomo; Okochi, Isamu; Okabe, Kimiko; Inoue, Takenari; Goto, Hideaki; Matsumura, Takeshi; Makino, Shun'ichi

    2013-01-01

    In many temperate terrestrial forest ecosystems, both natural human disturbances drive the reestablishment of forests. Succession in plant communities, in addition to reforestation following the creation of open sites through harvesting or natural disturbances, can affect forest faunal assemblages. Wild bees perform an important ecosystem function in human-altered and natural or seminatural ecosystems, as they are essential pollinators for both crops and wild flowering plants. To maintain high abundance and species richness for pollination services, it is important to conserve and create seminatural and natural land cover with optimal successional stages for wild bees. We examined the effects of forest succession on wild bees. In particular, we evaluated the importance of early successional stages for bees, which has been suspected but not previously demonstrated. A range of successional stages, between 1 and 178 years old, were examined in naturally regenerated and planted forests. In total 4465 wild bee individuals, representing 113 species, were captured. Results for total bees, solitary bees, and cleptoparasitic bees in both naturally regenerated and planted conifer forests indicated a higher abundance and species richness in the early successional stages. However, higher abundance and species richness of social bees in naturally regenerated forest were observed as the successional stages progressed, whereas the abundance of social bees in conifer planted forest showed a concave-shaped relationship when plotted. The results suggest that early successional stages of both naturally regenerated and conifer planted forest maintain a high abundance and species richness of solitary bees and their cleptoparasitic bees, although social bees respond differently in the early successional stages. This may imply that, in some cases, active forest stand management policies, such as the clear-cutting of planted forests for timber production, would create early successional

  5. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation

    PubMed Central

    Hori, Koichi; Maruyama, Fumito; Fujisawa, Takatomo; Togashi, Tomoaki; Yamamoto, Nozomi; Seo, Mitsunori; Sato, Syusei; Yamada, Takuji; Mori, Hiroshi; Tajima, Naoyuki; Moriyama, Takashi; Ikeuchi, Masahiko; Watanabe, Mai; Wada, Hajime; Kobayashi, Koichi; Saito, Masakazu; Masuda, Tatsuru; Sasaki-Sekimoto, Yuko; Mashiguchi, Kiyoshi; Awai, Koichiro; Shimojima, Mie; Masuda, Shinji; Iwai, Masako; Nobusawa, Takashi; Narise, Takafumi; Kondo, Satoshi; Saito, Hikaru; Sato, Ryoichi; Murakawa, Masato; Ihara, Yuta; Oshima-Yamada, Yui; Ohtaka, Kinuka; Satoh, Masanori; Sonobe, Kohei; Ishii, Midori; Ohtani, Ryosuke; Kanamori-Sato, Miyu; Honoki, Rina; Miyazaki, Daichi; Mochizuki, Hitoshi; Umetsu, Jumpei; Higashi, Kouichi; Shibata, Daisuke; Kamiya, Yuji; Sato, Naoki; Nakamura, Yasukazu; Tabata, Satoshi; Ida, Shigeru; Kurokawa, Ken; Ohta, Hiroyuki

    2014-01-01

    The colonization of land by plants was a key event in the evolution of life. Here we report the draft genome sequence of the filamentous terrestrial alga Klebsormidium flaccidum (Division Charophyta, Order Klebsormidiales) to elucidate the early transition step from aquatic algae to land plants. Comparison of the genome sequence with that of other algae and land plants demonstrate that K. flaccidum acquired many genes specific to land plants. We demonstrate that K. flaccidum indeed produces several plant hormones and homologues of some of the signalling intermediates required for hormone actions in higher plants. The K. flaccidum genome also encodes a primitive system to protect against the harmful effects of high-intensity light. The presence of these plant-related systems in K. flaccidum suggests that, during evolution, this alga acquired the fundamental machinery required for adaptation to terrestrial environments. PMID:24865297

  6. The method for detecting biological parameter of rice growth and early planting of paddy crop by using multi temporal remote sensing data

    NASA Astrophysics Data System (ADS)

    Domiri, D. D.

    2017-01-01

    Rice crop is the most important food crop for the Asian population, especially in Indonesia. During the growth of rice plants have four main phases, namely the early planting or inundation phase, the vegetative phase, the generative phase, and bare land phase. Monitoring the condition of the rice plant needs to be conducted in order to know whether the rice plants have problems or not in its growth. Application of remote sensing technology, which uses satellite data such as Landsat 8 and others which has a spatial and temporal resolution is high enough for monitoring the condition of crops such as paddy crop in a large area. In this study has been made an algorithm for monitoring rapidly of rice growth condition using Maximum of Vegetation Index (EVI Max). The results showed that the time of early planting can be estimated if known when EVI Max occurred. The value of EVI Max and when it occured can be known by trough spatial analysis of multitemporal EVI Landsat 8 or other medium spatial resolution satellites.

  7. Evolution of photorespiration from cyanobacteria to land plants, considering protein phylogenies and acquisition of carbon concentrating mechanisms.

    PubMed

    Hagemann, Martin; Kern, Ramona; Maurino, Veronica G; Hanson, David T; Weber, Andreas P M; Sage, Rowan F; Bauwe, Hermann

    2016-05-01

    Photorespiration and oxygenic photosynthesis are intimately linked processes. It has been shown that under the present day atmospheric conditions cyanobacteria and all eukaryotic phototrophs need functional photorespiration to grow autotrophically. The question arises as to when this essential partnership evolved, i.e. can we assume a coevolution of both processes from the beginning or did photorespiration evolve later to compensate for the generation of 2-phosphoglycolate (2PG) due to Rubisco's oxygenase reaction? This question is mainly discussed here using phylogenetic analysis of proteins involved in the 2PG metabolism and the acquisition of different carbon concentrating mechanisms (CCMs). The phylogenies revealed that the enzymes involved in the photorespiration of vascular plants have diverse origins, with some proteins acquired from cyanobacteria as ancestors of the chloroplasts and others from heterotrophic bacteria as ancestors of mitochondria in the plant cell. Only phosphoglycolate phosphatase was found to originate from Archaea. Notably glaucophyte algae, the earliest branching lineage of Archaeplastida, contain more photorespiratory enzymes of cyanobacterial origin than other algal lineages or land plants indicating a larger initial contribution of cyanobacterial-derived proteins to eukaryotic photorespiration. The acquisition of CCMs is discussed as a proxy for assessing the timing of periods when photorespiratory activity may have been enhanced. The existence of CCMs also had marked influence on the structure and function of photorespiration. Here, we discuss evidence for an early and continuous coevolution of photorespiration, CCMs and photosynthesis starting from cyanobacteria via algae, to land plants. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  8. Acquisition, Conservation, and Loss of Dual-Targeted Proteins in Land Plants1[W][OA

    PubMed Central

    Xu, Lin; Carrie, Chris; Law, Simon R.; Murcha, Monika W.; Whelan, James

    2013-01-01

    The dual-targeting ability of a variety of proteins from Physcomitrella patens, rice (Oryza sativa), and Arabidopsis (Arabidopsis thaliana) was tested to determine when dual targeting arose and to what extent it was conserved in land plants. Overall, the targeting ability of over 80 different proteins from rice and P. patens, representing 42 dual-targeted proteins in Arabidopsis, was tested. We found that dual targeting arose early in land plant evolution, as it was evident in many cases with P. patens proteins that were conserved in rice and Arabidopsis. Furthermore, we found that the acquisition of dual-targeting ability is still occurring, evident in P. patens as well as rice and Arabidopsis. The loss of dual-targeting ability appears to be rare, but does occur. Ascorbate peroxidase represents such an example. After gene duplication in rice, individual genes encode proteins that are targeted to a single organelle. Although we found that dual targeting was generally conserved, the ability to detect dual-targeted proteins differed depending on the cell types used. Furthermore, it appears that small changes in the targeting signal can result in a loss (or gain) of dual-targeting ability. Overall, examination of the targeting signals within this study did not reveal any clear patterns that would predict dual-targeting ability. The acquisition of dual-targeting ability also appears to be coordinated between proteins. Mitochondrial intermembrane space import and assembly protein40, a protein involved in oxidative folding in mitochondria and peroxisomes, provides an example where acquisition of dual targeting is accompanied by the dual targeting of substrate proteins. PMID:23257241

  9. [Maintaining mechanism of species diversity of land plant communities].

    PubMed

    Shang, Wenyan; Wu, Gang; Fu, Xiao; Liu, Yang

    2005-03-01

    The maintaining mechanism of species diversity of land plant communities is a key and advancing edge in biodiversity study. Botanists and ecologists have presented many hypotheses and theories with controversies, and no general theory system was available. In this paper, the problem was reviewed mainly on two scales. The first was big spatial scale, aiming at the physical and natural factors that affect the species diversity, including histories and ages of plant communities, gradient changes such as latitude gradient, water gradient, altitude gradient and soil nutrients gradient, area effect, and isolation; and the second was concentrated on a special plant community, and mainly discussed the relationships of biodiversity with biotic factors (primary productivity, relationship between species, and gap dynamics) and abiotic factors (succession, disturbance and spatial heterogeneity, and human activity).

  10. Ecological perspectives of land use history: The Arid Lands Ecology (ALE) Reserve

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hinds, N R; Rogers, L E

    The objective of this study was to gather information on the land use history of the Arid Land Ecology (ALE) Reserve so that current ecological research could be placed within a historical perspective. The data were gathered in the early 1980s by interviewing former users of the land and from previously published research (where available). Interviews with former land users of the ALE Reserve in Benton County, Washington, revealed that major land uses from 1880 to 1940 were homesteading, grazing, oil/gas production, and road building. Land use practices associated with grazing and homesteading have left the greatest impact on themore » landscape. Disturbed sites where succession is characterized by non-native species, plots where sagebrush was railed away, and sheep trails are major indications today of past land uses. Recent estimates of annual bunchgrass production do ALE do not support the widespread belief that bunchgrass were more productive during the homesteading era, though the invasion of cheatgrass (Bromus tectorum), Jim Hill mustard (Sisymbrium altissium), and other European alien plant species has altered pre-settlement succession patterns. 15 refs., 6 figs., 1 tab.« less

  11. Effects of arbuscular mycorrhizal fungi and maternal plant sex on seed germination and early plant establishment.

    PubMed

    Varga, Sandra

    2015-03-01

    • Arbuscular mycorrhizal fungi usually enhance overall plant performance, yet their effects on seed germination and early plant establishment, crucial steps in plant cycles, are generally overlooked. In gynodioecious species, sexual dimorphism in these traits has been reported, with females producing seeds that germinate at a faster rate than seeds from hermaphrodites.• Using the gynodioecious plant Geranium sylvaticum, I investigated in a greenhouse experiment whether the presence of arbuscular mycorrhizal spores affects seed germination and early plant establishment, examining at the same time whether the sex of the mother producing the seeds also influences these parameters and whether sex-specific interactions between these two factors exist.• The presence of arbuscular mycorrhizal spores in the soil decreased seed germination, did not affect plant survival, but did increase plant growth. Moreover, no significant differences in seed traits were detected between the sexes of the plants producing the seeds.• This study demonstrates that arbuscular mycorrhizal fungi may have contrasting effects for plants during early life stages and that mycorrhizal effects can take place even at the precolonization stage. © 2015 Botanical Society of America, Inc.

  12. Sugar composition of the pectic polysaccharides of charophytes, the closest algal relatives of land-plants: presence of 3-O-methyl-D-galactose residues.

    PubMed

    O'Rourke, Christina; Gregson, Timothy; Murray, Lorna; Sadler, Ian H; Fry, Stephen C

    2015-08-01

    During evolution, plants have acquired and/or lost diverse sugar residues as cell-wall constituents. Of particular interest are primordial cell-wall features that existed, and in some cases abruptly changed, during the momentous step whereby land-plants arose from charophytic algal ancestors. Polysaccharides were extracted from four charophyte orders [Chlorokybales (Chlorokybus atmophyticus), Klebsormidiales (Klebsormidium fluitans, K. subtile), Charales (Chara vulgaris, Nitella flexilis), Coleochaetales (Coleochaete scutata)] and an early-diverging land-plant (Anthoceros agrestis). 'Pectins' and 'hemicelluloses', operationally defined as extractable in oxalate (100 °C) and 6 m NaOH (37 °C), respectively, were acid- or Driselase-hydrolysed, and the monosaccharides analysed chromatographically. One unusual monosaccharide, 'U', was characterized by (1)H/(13)C-nuclear magnetic resonance spectroscopy and also enzymically. 'U' was identified as 3-O-methyl-D-galactose (3-MeGal). All pectins, except in Klebsormidium, contained acid- and Driselase-releasable galacturonate, suggesting homogalacturonan. All pectins, without exception, released rhamnose and galactose on acid hydrolysis; however, only in 'higher' charophytes (Charales, Coleochaetales) and Anthoceros were these sugars also efficiently released by Driselase, suggesting rhamnogalacturonan-I. Pectins of 'higher' charophytes, especially Chara, contained little arabinose, instead possessing 3-MeGal. Anthoceros hemicelluloses were rich in glucose, xylose, galactose and arabinose (suggesting xyloglucan and arabinoxylan), none of which was consistently present in charophyte hemicelluloses. Homogalacturonan is an ancient streptophyte feature, albeit secondarily lost in Klebsormidium. When conquering the land, the first embryophytes already possessed rhamnogalacturonan-I. In contrast, charophyte and land-plant hemicelluloses differ substantially, indicating major changes during terrestrialization. The presence of 3

  13. Sugar composition of the pectic polysaccharides of charophytes, the closest algal relatives of land-plants: presence of 3-O-methyl-d-galactose residues

    PubMed Central

    O’Rourke, Christina; Gregson, Timothy; Murray, Lorna; Sadler, Ian H.; Fry, Stephen C.

    2015-01-01

    Background and Aims During evolution, plants have acquired and/or lost diverse sugar residues as cell-wall constituents. Of particular interest are primordial cell-wall features that existed, and in some cases abruptly changed, during the momentous step whereby land-plants arose from charophytic algal ancestors. Methods Polysaccharides were extracted from four charophyte orders [Chlorokybales (Chlorokybus atmophyticus), Klebsormidiales (Klebsormidium fluitans, K. subtile), Charales (Chara vulgaris, Nitella flexilis), Coleochaetales (Coleochaete scutata)] and an early-diverging land-plant (Anthoceros agrestis). ‘Pectins’ and ‘hemicelluloses’, operationally defined as extractable in oxalate (100 °C) and 6 m NaOH (37 °C), respectively, were acid- or Driselase-hydrolysed, and the monosaccharides analysed chromatographically. One unusual monosaccharide, ‘U’, was characterized by 1H/13C-nuclear magnetic resonance spectroscopy and also enzymically. Key Results ‘U’ was identified as 3-O-methyl-d-galactose (3-MeGal). All pectins, except in Klebsormidium, contained acid- and Driselase-releasable galacturonate, suggesting homogalacturonan. All pectins, without exception, released rhamnose and galactose on acid hydrolysis; however, only in ‘higher’ charophytes (Charales, Coleochaetales) and Anthoceros were these sugars also efficiently released by Driselase, suggesting rhamnogalacturonan-I. Pectins of ‘higher’ charophytes, especially Chara, contained little arabinose, instead possessing 3-MeGal. Anthoceros hemicelluloses were rich in glucose, xylose, galactose and arabinose (suggesting xyloglucan and arabinoxylan), none of which was consistently present in charophyte hemicelluloses. Conclusions Homogalacturonan is an ancient streptophyte feature, albeit secondarily lost in Klebsormidium. When conquering the land, the first embryophytes already possessed rhamnogalacturonan-I. In contrast, charophyte and land-plant hemicelluloses differ

  14. Light-harvesting antenna complexes in the moss Physcomitrella patens: implications for the evolutionary transition from green algae to land plants.

    PubMed

    Iwai, Masakazu; Yokono, Makio

    2017-06-01

    Plants have successfully adapted to a vast range of terrestrial environments during their evolution. To elucidate the evolutionary transition of light-harvesting antenna proteins from green algae to land plants, the moss Physcomitrella patens is ideally placed basally among land plants. Compared to the genomes of green algae and land plants, the P. patens genome codes for more diverse and redundant light-harvesting antenna proteins. It also encodes Lhcb9, which has characteristics not found in other light-harvesting antenna proteins. The unique complement of light-harvesting antenna proteins in P. patens appears to facilitate protein interactions that include those lost in both green algae and land plants with regard to stromal electron transport pathways and photoprotection mechanisms. This review will highlight unique characteristics of the P. patens light-harvesting antenna system and the resulting implications about the evolutionary transition during plant terrestrialization. Copyright © 2017 Elsevier Ltd. All rights reserved.

  15. The Rise of Flowering Plants and Land Surface Physics: The Cretaceous and Eocene Were Different

    NASA Astrophysics Data System (ADS)

    Upchurch, G. R.; Feild, T.

    2010-12-01

    The Cretaceous and Eocene have served as the poster children of past greenhouse climates. One difference between the two time periods is that angiosperms (flowering plants) underwent a major diversification and rise to dominance during the mid-Cretaceous to Paleocene. Flowering plants differ from all other living and fossil plants in having significantly higher rates of transpiration and photosynthesis, which in modern leaves correlate with the density of venation (Dv), a feature that can be measured directly from fossils. This increase in Dv, coupled with an increase in the abundance of angiosperms, is thought to have had major impact on the climate system. This is, in part, because transpiration plays an important role in determining the ratio of sensible to latent heat flux from the land surface and in determining precipitation rate in regions such as the equatorial rainforest. Analysis of Dv in fossil leaves indicates two phases of increase in transpiration rate for angiosperms during the Cretaceous-Paleocene. The oldest known angiosperms (Aptian-early Albian) have a low Dv characteristic of extant and fossil ferns and gymnosperms. At this time angiosperms are low-stature plants of minor importance in terms of relative abundance and diversity (<5%). The first phase of Dv increase occurs during the Late Albian to Cenomanian, where average Dv is 40% greater than that of conifers and ferns, and maximum Dv reaches levels characteristic of many trees from the temperate zone. This first phase coincides with the first local dominance of angiosperms, the first occurrence of moderate to large angiosperm trees (up to 1 m in diameter) , and the first common occurrence of angiosperms in the Arctic. The second phase of Dv increase occurs during the Maastrichtian to Paleocene, where average Dv reaches levels characteristic of modern tropical forests and maximum Dv reaches the level found in highly productive modern vegetation. This second phase coincides with the rise to

  16. The Mechanism Forming the Cell Surface of Tip-Growing Rooting Cells Is Conserved among Land Plants.

    PubMed

    Honkanen, Suvi; Jones, Victor A S; Morieri, Giulia; Champion, Clement; Hetherington, Alexander J; Kelly, Steve; Proust, Hélène; Saint-Marcoux, Denis; Prescott, Helen; Dolan, Liam

    2016-12-05

    To discover mechanisms that controlled the growth of the rooting system in the earliest land plants, we identified genes that control the development of rhizoids in the liverwort Marchantia polymorpha. 336,000 T-DNA transformed lines were screened for mutants with defects in rhizoid growth, and a de novo genome assembly was generated to identify the mutant genes. We report the identification of 33 genes required for rhizoid growth, of which 6 had not previously been functionally characterized in green plants. We demonstrate that members of the same orthogroup are active in cell wall synthesis, cell wall integrity sensing, and vesicle trafficking during M. polymorpha rhizoid and Arabidopsis thaliana root hair growth. This indicates that the mechanism for constructing the cell surface of tip-growing rooting cells is conserved among land plants and was active in the earliest land plants that existed sometime more than 470 million years ago [1, 2]. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  17. The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants

    PubMed Central

    Alaba, Sylwia; Piszczalka, Pawel; Pietrykowska, Halina; Pacak, Andrzej M; Sierocka, Izabela; Nuc, Przemyslaw W; Singh, Kashmir; Plewka, Patrycja; Sulkowska, Aleksandra; Jarmolowski, Artur; Karlowski, Wojciech M; Szweykowska-Kulinska, Zofia

    2015-01-01

    Liverworts are the most basal group of extant land plants. Nonetheless, the molecular biology of liverworts is poorly understood. Gene expression has been studied in only one species, Marchantia polymorpha. In particular, no microRNA (miRNA) sequences from liverworts have been reported. Here, Illumina-based next-generation sequencing was employed to identify small RNAs, and analyze the transcriptome and the degradome of Pellia endiviifolia. Three hundred and eleven conserved miRNA plant families were identified, and 42 new liverwort-specific miRNAs were discovered. The RNA degradome analysis revealed that target mRNAs of only three miRNAs (miR160, miR166, and miR408) have been conserved between liverworts and other land plants. New targets were identified for the remaining conserved miRNAs. Moreover, the analysis of the degradome permitted the identification of targets for 13 novel liverwort-specific miRNAs. Interestingly, three of the liverwort microRNAs show high similarity to previously reported miRNAs from Chlamydomonas reinhardtii. This is the first observation of miRNAs that exist both in a representative alga and in the liverwort P. endiviifolia but are not present in land plants. The results of the analysis of the P. endivifolia microtranscriptome support the conclusions of previous studies that placed liverworts at the root of the land plant evolutionary tree of life. PMID:25530158

  18. Food plants used during traditional wrestling in Kabyè land of Togo.

    PubMed

    Kpatcha, Tchazou; Agbonon, Amegnona; Gbeassor, Messanvi

    2016-01-01

    In the traditional sports like the fight, natural products from minerals, animals and plants are used to increase physical resistance and performance. For a better understanding of this practice, an ethnopharmacological survey was carried out in kabyè land, North of Togo, to identify current plants used as foods plants during traditional wrestling. Ethnopharmacological data were collected through semi-structured method and personal interviews in the Kabyè locality during traditional wrestling. At least, twelve villages were surveyed in the study. Results indicated that 57 plants are widely used by local people as food plants generally during wrestling time. These plants are used traditionally for many others purposes. We concluded that these plants may serve as sources for pharmacological investigations in physical performance improvement.

  19. Predicting plant diversity patterns in Madagascar: understanding the effects of climate and land cover change in a biodiversity hotspot.

    PubMed

    Brown, Kerry A; Parks, Katherine E; Bethell, Colin A; Johnson, Steig E; Mulligan, Mark

    2015-01-01

    Climate and land cover change are driving a major reorganization of terrestrial biotic communities in tropical ecosystems. In an effort to understand how biodiversity patterns in the tropics will respond to individual and combined effects of these two drivers of environmental change, we use species distribution models (SDMs) calibrated for recent climate and land cover variables and projected to future scenarios to predict changes in diversity patterns in Madagascar. We collected occurrence records for 828 plant genera and 2186 plant species. We developed three scenarios, (i.e., climate only, land cover only and combined climate-land cover) based on recent and future climate and land cover variables. We used this modelling framework to investigate how the impacts of changes to climate and land cover influenced biodiversity across ecoregions and elevation bands. There were large-scale climate- and land cover-driven changes in plant biodiversity across Madagascar, including both losses and gains in diversity. The sharpest declines in biodiversity were projected for the eastern escarpment and high elevation ecosystems. Sharp declines in diversity were driven by the combined climate-land cover scenarios; however, there were subtle, region-specific differences in model outputs for each scenario, where certain regions experienced relatively higher species loss under climate or land cover only models. We strongly caution that predicted future gains in plant diversity will depend on the development and maintenance of dispersal pathways that connect current and future suitable habitats. The forecast for Madagascar's plant diversity in the face of future environmental change is worrying: regional diversity will continue to decrease in response to the combined effects of climate and land cover change, with habitats such as ericoid thickets and eastern lowland and sub-humid forests particularly vulnerable into the future.

  20. Predicting Plant Diversity Patterns in Madagascar: Understanding the Effects of Climate and Land Cover Change in a Biodiversity Hotspot

    PubMed Central

    Brown, Kerry A.; Parks, Katherine E.; Bethell, Colin A.; Johnson, Steig E.; Mulligan, Mark

    2015-01-01

    Climate and land cover change are driving a major reorganization of terrestrial biotic communities in tropical ecosystems. In an effort to understand how biodiversity patterns in the tropics will respond to individual and combined effects of these two drivers of environmental change, we use species distribution models (SDMs) calibrated for recent climate and land cover variables and projected to future scenarios to predict changes in diversity patterns in Madagascar. We collected occurrence records for 828 plant genera and 2186 plant species. We developed three scenarios, (i.e., climate only, land cover only and combined climate-land cover) based on recent and future climate and land cover variables. We used this modelling framework to investigate how the impacts of changes to climate and land cover influenced biodiversity across ecoregions and elevation bands. There were large-scale climate- and land cover-driven changes in plant biodiversity across Madagascar, including both losses and gains in diversity. The sharpest declines in biodiversity were projected for the eastern escarpment and high elevation ecosystems. Sharp declines in diversity were driven by the combined climate-land cover scenarios; however, there were subtle, region-specific differences in model outputs for each scenario, where certain regions experienced relatively higher species loss under climate or land cover only models. We strongly caution that predicted future gains in plant diversity will depend on the development and maintenance of dispersal pathways that connect current and future suitable habitats. The forecast for Madagascar’s plant diversity in the face of future environmental change is worrying: regional diversity will continue to decrease in response to the combined effects of climate and land cover change, with habitats such as ericoid thickets and eastern lowland and sub-humid forests particularly vulnerable into the future. PMID:25856241

  1. Land plants and DNA barcodes: short-term and long-term goals.

    PubMed

    Chase, Mark W; Salamin, Nicolas; Wilkinson, Mike; Dunwell, James M; Kesanakurthi, Rao Prasad; Haider, Nadia; Haidar, Nadia; Savolainen, Vincent

    2005-10-29

    Land plants have had the reputation of being problematic for DNA barcoding for two general reasons: (i) the standard DNA regions used in algae, animals and fungi have exceedingly low levels of variability and (ii) the typically used land plant plastid phylogenetic markers (e.g. rbcL, trnL-F, etc.) appear to have too little variation. However, no one has assessed how well current phylogenetic resources might work in the context of identification (versus phylogeny reconstruction). In this paper, we make such an assessment, particularly with two of the markers commonly sequenced in land plant phylogenetic studies, plastid rbcL and internal transcribed spacers of the large subunits of nuclear ribosomal DNA (ITS), and find that both of these DNA regions perform well even though the data currently available in GenBank/EBI were not produced to be used as barcodes and BLAST searches are not an ideal tool for this purpose. These results bode well for the use of even more variable regions of plastid DNA (such as, for example, psbA-trnH) as barcodes, once they have been widely sequenced. In the short term, efforts to bring land plant barcoding up to the standards being used now in other organisms should make swift progress. There are two categories of DNA barcode users, scientists in fields other than taxonomy and taxonomists. For the former, the use of mitochondrial and plastid DNA, the two most easily assessed genomes, is at least in the short term a useful tool that permits them to get on with their studies, which depend on knowing roughly which species or species groups they are dealing with, but these same DNA regions have important drawbacks for use in taxonomic studies (i.e. studies designed to elucidate species limits). For these purposes, DNA markers from uniparentally (usually maternally) inherited genomes can only provide half of the story required to improve taxonomic standards being used in DNA barcoding. In the long term, we will need to develop more

  2. Land plants and DNA barcodes: short-term and long-term goals

    PubMed Central

    Chase, Mark W; Salamin, Nicolas; Wilkinson, Mike; Dunwell, James M; Kesanakurthi, Rao Prasad; Haidar, Nadia; Savolainen, Vincent

    2005-01-01

    Land plants have had the reputation of being problematic for DNA barcoding for two general reasons: (i) the standard DNA regions used in algae, animals and fungi have exceedingly low levels of variability and (ii) the typically used land plant plastid phylogenetic markers (e.g. rbcL, trnL-F, etc.) appear to have too little variation. However, no one has assessed how well current phylogenetic resources might work in the context of identification (versus phylogeny reconstruction). In this paper, we make such an assessment, particularly with two of the markers commonly sequenced in land plant phylogenetic studies, plastid rbcL and internal transcribed spacers of the large subunits of nuclear ribosomal DNA (ITS), and find that both of these DNA regions perform well even though the data currently available in GenBank/EBI were not produced to be used as barcodes and BLAST searches are not an ideal tool for this purpose. These results bode well for the use of even more variable regions of plastid DNA (such as, for example, psbA-trnH) as barcodes, once they have been widely sequenced. In the short term, efforts to bring land plant barcoding up to the standards being used now in other organisms should make swift progress. There are two categories of DNA barcode users, scientists in fields other than taxonomy and taxonomists. For the former, the use of mitochondrial and plastid DNA, the two most easily assessed genomes, is at least in the short term a useful tool that permits them to get on with their studies, which depend on knowing roughly which species or species groups they are dealing with, but these same DNA regions have important drawbacks for use in taxonomic studies (i.e. studies designed to elucidate species limits). For these purposes, DNA markers from uniparentally (usually maternally) inherited genomes can only provide half of the story required to improve taxonomic standards being used in DNA barcoding. In the long term, we will need to develop more

  3. Chapter 9: Planting hardwood tree seedlings on reclaimed mine land in the Appalachian region

    Treesearch

    V. Davis; J. Franklin; C. Zipper; P. Angel

    2017-01-01

    The Forestry Reclamation Approach (FRA) is a method of reclaiming surface coal mines to forested postmining land use (Chapter 2, this volume). "Use proper tree planting techniques" is Step 5 of the FRA; when used with the other FRA steps, proper tree planting can help to ensure successful reforestation. Proper care and planting of tree seedlings is essential...

  4. Interagency partnering for weed prevention--progress on development of a National Early Detection and Rapid Response System for Invasive Plants in the United States

    USGS Publications Warehouse

    Westbrooks, R.; Westbrooks, R.

    2011-01-01

    Over the past 50 years, experience has shown that interagency groups provide an effective forum for addressing various invasive species issues and challenges on multiple land units. However, more importantly, they can also provide a coordinated framework for early detection, reporting, identification and vouchering, rapid assessment, and rapid response to new and emerging invasive plants in the United States. Interagency collaboration maximizes the use of available expertise, resources, and authority for promoting early detection and rapid response (EDRR) as the preferred management option for addressing new and emerging invasive plants. Currently, an interagency effort is underway to develop a National EDRR System for Invasive Plants in the United States. The proposed system will include structural and informational elements. Structural elements of the system include a network of interagency partner groups to facilitate early detection and rapid response to new invasive plants, including the Federal Interagency Committee for the Management of Noxious and Exotic Weeds (FICMNEW), State Invasive Species Councils, State Early Detection and Rapid Response Coordinating Committees, State Volunteer Detection and Reporting Networks, Invasive Plant Task Forces, and Cooperative Weed Management Areas. Informational elements and products being developed include Regional Invasive Plant Atlases, and EDRR Guidelines for EDRR Volunteer Network Training, Rapid Assessment and Rapid Response, and Criteria for Selection of EDRR Species. System science and technical support elements which are provided by cooperating state and federal scientists, include EDRR guidelines, training curriculum for EDRR volunteers and agency field personnel, plant identification and vouchering, rapid assessments, as well as predictive modeling and ecological range studies for invasive plant species.

  5. Machine vision extracted plant movement for early detection of plant water stress.

    PubMed

    Kacira, M; Ling, P P; Short, T H

    2002-01-01

    A methodology was established for early, non-contact, and quantitative detection of plant water stress with machine vision extracted plant features. Top-projected canopy area (TPCA) of the plants was extracted from plant images using image-processing techniques. Water stress induced plant movement was decoupled from plant diurnal movement and plant growth using coefficient of relative variation of TPCA (CRV[TPCA)] and was found to be an effective marker for water stress detection. Threshold value of CRV(TPCA) as an indicator of water stress was determined by a parametric approach. The effectiveness of the sensing technique was evaluated against the timing of stress detection by an operator. Results of this study suggested that plant water stress detection using projected canopy area based features of the plants was feasible.

  6. Eco-evolutionary processes affecting plant-herbivore interactions during early community succession.

    PubMed

    Howard, Mia M; Kalske, Aino; Kessler, André

    2018-06-01

    The quality and outcome of organismal interactions are not only a function of genotypic composition of the interacting species, but also the surrounding environment. Both the strength and direction of natural selection on interacting populations vary with the community context, which itself is changed by these interactions. Here, we test for the role of interacting evolutionary and ecological processes in plant-herbivore interactions during early community succession in the tall goldenrod, Solidago altissima. We use surveys in a large-scale field experiment with repeated plots representing 6 years of early oldfield succession and reciprocal transplant common garden experiments to test for the relative importance of rapid evolution (genetic) and environmental changes (soil quality) in affecting mean plant resistance and growth phenotypes during community succession. While plant growth varied strongly with soil quality over the first 5 years of agricultural abandonment, plant secondary metabolism, and herbivore resistance varied minimally with the soil environment. Instead, mean composition and abundance of plant secondary compound bouquets differed between S. altissima plants from populations collected in communities in the first ("early") and sixth ("intermediate") years of oldfield succession, which was reflected in the feeding preference of the specialist herbivore, Trirhabda virgata, for early succession lines. Moreover, this preference was most pronounced on poorer quality, early succession soils. Overall, our data demonstrate that plant quality varies for insect herbivores during the course of early succession and this change is a combination of altered genotypic composition of the population and phenotypic plasticity in different soil environments.

  7. [Distribution characteristics of soil nematodes in reclaimed land of copper-mine-tailings in different plant associations].

    PubMed

    Zhu, Yong-heng; Li, Ke-zhong; Zhang, Heng; Han, Fei; Zhou, Ju-hua; Gao, Ting-ting

    2015-02-01

    A survey was carried out to investigate soil nematode communities in the plant associations of gramineae (Arthraxon lanceolatus, AL; Imperata cylindrica, IC) and leguminosae (Glycine soja, GS) in reclaimed land of copper-mine-tailings and in the plant associations of gramineae (Digitaria chrysoblephara, DC-CK) of peripheral control in Fenghuang Mountain, Tongling City. A total of 1277 nematodes were extracted and sorted into 51 genera. The average individual density of the nematodes was 590 individuals · 100 g(-1) dry soil. In order to analyze the distribution character- istics of soil nematode communities in reclaimed land of copper-mine-tailings, Shannon community diversity index and soil food web structure indices were applied in the research. The results showed that the total number of nematode genus and the Shannon community diversity index of soil nematode in the three plant associations of AL, IC and GS were less than that in the plant associations of DC-CK. Compared with the ecological indices of soil nematode communities among the different plant associations in reclaimed land of copper-mine-tailings and peripheral natural habitat, we found that the structure of soil food web in the plant associations of GS was more mature, with bacterial decomposition being dominant in the soil organic matter decomposition, and that the soil ecosystem in the plant associations of GS was not stable with low interference. This indicated that the soil food web in the plant associations of leguminosae had a greater development potential to improve the ecological stability of the reclaimed land of copper-mine-tailings. On the other hand, the structure of soil food web in the plant associations of AL and IC were relatively stable in a structured state with fungal decomposition being dominant in the decomposition of soil organic matter. This indicated that the soil food web in the plant associations of gramineae was at a poor development level.

  8. Ancestor of land plants acquired the DNA-3-methyladenine glycosylase (MAG) gene from bacteria through horizontal gene transfer.

    PubMed

    Fang, Huimin; Huangfu, Liexiang; Chen, Rujia; Li, Pengcheng; Xu, Shuhui; Zhang, Enying; Cao, Wei; Liu, Li; Yao, Youli; Liang, Guohua; Xu, Chenwu; Zhou, Yong; Yang, Zefeng

    2017-08-24

    The origin and evolution of land plants was an important event in the history of life and initiated the establishment of modern terrestrial ecosystems. From water to terrestrial environments, plants needed to overcome the enhanced ultraviolet (UV) radiation and many other DNA-damaging agents. Evolving new genes with the function of DNA repair is critical for the origin and radiation of land plants. In bacteria, the DNA-3-methyladenine glycosylase (MAG) recognizes of a variety of base lesions and initiates the process of the base excision repair for damaged DNA. The homologs of MAG gene are present in all major lineages of streptophytes, and both the phylogenic and sequence similarity analyses revealed that green plant MAG gene originated through an ancient horizontal gene transfer (HGT) event from bacteria. Experimental evidence demonstrated that the expression of the maize ZmMAG gene was induced by UV and zeocin, both of which are known as DNA-damaging agents. Further investigation revealed that Streptophyta MAG genes had undergone positive selection during the initial evolutionary period in the ancestor of land plants. Our findings demonstrated that the ancient HGT of MAG to the ancestor of land plants probably played an important role in preadaptation to DNA-damaging agents in terrestrial environments.

  9. Food plants used during traditional wrestling in Kabyè land of Togo

    PubMed Central

    Kpatcha, Tchazou; Agbonon, Amegnona; Gbeassor, Messanvi

    2016-01-01

    Introduction In the traditional sports like the fight, natural products from minerals, animals and plants are used to increase physical resistance and performance. For a better understanding of this practice, an ethnopharmacological survey was carried out in kabyè land, North of Togo, to identify current plants used as foods plants during traditional wrestling. Methods Ethnopharmacological data were collected through semi-structured method and personal interviewsin the Kabyè locality during traditional wrestling. At least, twelve villages were surveyed in the study. Results Results indicated that 57 plants are widely used by local people as food plants generally during wrestling time. These plants are used traditionally for many others purposes. Conclusion We concluded that these plants may serve as sources for pharmacological investigations in physical performance improvement. PMID:27200130

  10. Intensive land use drives small-scale homogenization of plant- and leafhopper communities and promotes generalists.

    PubMed

    Chisté, Melanie N; Mody, Karsten; Kunz, Gernot; Gunczy, Johanna; Blüthgen, Nico

    2018-02-01

    The current biodiversity decline through anthropogenic land-use not only involves local species losses, but also homogenization of communities, with a few generalist species benefitting most from human activities. Most studies assessed community heterogeneity (β-diversity) on larger scales by comparing different sites, but little is known about impacts on β-diversity within each site, which is relevant for understanding variation in the level of α-diversity, the small-scale distribution of species and associated habitat heterogeneity. To obtain our dataset with 36,899 individuals out of 117 different plant- and leafhopper (Auchenorrhyncha) species, we sampled communities of 140 managed grassland sites across Germany by quantitative vacuum suction of five 1 m 2 plots on each site. Sites differed in land-use intensity as characterized by intensity of fertilization, mowing and grazing. Our results demonstrate a significant within-site homogenization of plant- and leafhopper communities with increasing land-use intensity. Correspondingly, density (- 78%) and γ-diversity (- 35%) declined, particularly with fertilization and mowing intensity. More than 34% of plant- and leafhopper species were significant losers and only 6% were winners of high land-use intensity, with abundant and widespread species being less affected. Increasing land-use intensity adversely affected dietary specialists and promoted generalist species. Our study emphasizes considerable, multifaceted effects of land-use intensification on species loss, with a few dominant generalists winning, and an emerging trend towards more homogenized assemblages. By demonstrating homogenization for the first time within sites, our study highlights that anthropogenic influences on biodiversity even occur on small scales.

  11. Early Agriculture: Land Clearance and Climate Effects

    NASA Astrophysics Data System (ADS)

    Ruddiman, W. F.

    2013-12-01

    In the 2003 AGU Emiliani Lecture, I proposed the 'early anthropogenic hypothesis' --the idea that major anthropogenic effects on greenhouse gases and climate occurred thousands of years before the industrial era. In the decade since then, several dozen published papers have argued its pros and cons. In the 2013 Tyndall History of Global Change Lecture I will update where matters now stand. I will show figures from the 2003 Climate Change paper that laid out the initial hypothesis, and then update subsequent evidence from ice-core drilling, archeology, and land-use histories. The primary claims in the 2003 hypothesis were these: (1) the CH4 rise since 5000 years ago is anthropogenic; (2) the CO2 rise since 7000 years ago is also anthropogenic; (3) the amount of carbon emitted from preindustrial deforestation was roughly twice the amount released during the industrial era; (4) global temperature would have been cooler by about 0.8oC by the start of the industrial era if agricultural CO2 and CH4 emissions had not occurred; (5) early anthropogenic warming prevented the inception of new ice sheets at high northern latitudes; and (6) pandemics and other population catastrophes during the last 2000 years caused CO2 decreases lasting decades to centuries. The new evidence shows that these claims have held up well. The late-Holocene CO2 and CH4 rises are anomalous compared to average gas trends during previous interglaciations of the last 800,000 years. Land-use models based on historical data simulate pre-industrial CO2 carbon releases more than twice the industrial amounts. Archeological estimates of CH4 emissions from expanding rice irrigation account for much of the late Holocene CH4 rise, even without including livestock emissions or biomass burning. Model simulations show that the large pre-industrial greenhouse-gas emissions indicated by these historical and archeological estimates would have warmed global climate by more than 1oC and prevented northern glacial

  12. Belowground rhizomes in paleosols: The hidden half of an Early Devonian vascular plant

    NASA Astrophysics Data System (ADS)

    Xue, Jinzhuang; Deng, Zhenzhen; Huang, Pu; Huang, Kangjun; Benton, Michael J.; Cui, Ying; Wang, Deming; Liu, Jianbo; Shen, Bing; Basinger, James F.; Hao, Shougang

    2016-08-01

    The colonization of terrestrial environments by rooted vascular plants had far-reaching impacts on the Earth system. However, the belowground structures of early vascular plants are rarely documented, and thus the plant-soil interactions in early terrestrial ecosystems are poorly understood. Here we report the earliest rooted paleosols (fossil soils) in Asia from Early Devonian deposits of Yunnan, China. Plant traces are extensive within the soil and occur as complex network-like structures, which are interpreted as representing long-lived, belowground rhizomes of the basal lycopsid Drepanophycus. The rhizomes produced large clones and helped the plant survive frequent sediment burial in well-drained soils within a seasonal wet-dry climate zone. Rhizome networks contributed to the accumulation and pedogenesis of floodplain sediments and increased the soil stabilizing effects of early plants. Predating the appearance of trees with deep roots in the Middle Devonian, plant rhizomes have long functioned in the belowground soil ecosystem. This study presents strong, direct evidence for plant-soil interactions at an early stage of vascular plant radiation. Soil stabilization by complex rhizome systems was apparently widespread, and contributed to landscape modification at an earlier time than had been appreciated.

  13. Belowground rhizomes in paleosols: The hidden half of an Early Devonian vascular plant.

    PubMed

    Xue, Jinzhuang; Deng, Zhenzhen; Huang, Pu; Huang, Kangjun; Benton, Michael J; Cui, Ying; Wang, Deming; Liu, Jianbo; Shen, Bing; Basinger, James F; Hao, Shougang

    2016-08-23

    The colonization of terrestrial environments by rooted vascular plants had far-reaching impacts on the Earth system. However, the belowground structures of early vascular plants are rarely documented, and thus the plant-soil interactions in early terrestrial ecosystems are poorly understood. Here we report the earliest rooted paleosols (fossil soils) in Asia from Early Devonian deposits of Yunnan, China. Plant traces are extensive within the soil and occur as complex network-like structures, which are interpreted as representing long-lived, belowground rhizomes of the basal lycopsid Drepanophycus The rhizomes produced large clones and helped the plant survive frequent sediment burial in well-drained soils within a seasonal wet-dry climate zone. Rhizome networks contributed to the accumulation and pedogenesis of floodplain sediments and increased the soil stabilizing effects of early plants. Predating the appearance of trees with deep roots in the Middle Devonian, plant rhizomes have long functioned in the belowground soil ecosystem. This study presents strong, direct evidence for plant-soil interactions at an early stage of vascular plant radiation. Soil stabilization by complex rhizome systems was apparently widespread, and contributed to landscape modification at an earlier time than had been appreciated.

  14. 75 FR 4581 - Endangered [and Threatened] Wildlife and Plants; Permit(s); Land Clearing Associated With...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-28

    ...] Endangered [and Threatened] Wildlife and Plants; Permit(s); Land Clearing Associated With Phosphate Mining in... (Aphelocoma coerulescens)--occupied habitat incidental to land clearing and phosphate mining in Manatee County... with phosphate mining which will result in the take of 100 ac of occupied scrub-jay habitat, including...

  15. 75 FR 38831 - Endangered [and Threatened] Wildlife and Plants; Permit(s); Land Clearing Associated With...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-06

    ...] Endangered [and Threatened] Wildlife and Plants; Permit(s); Land Clearing Associated With Phosphate Mining in... (Aphelocoma coerulescens)-occupied habitat incidental to land clearing and phosphate mining in Manatee County... with phosphate mining which will result in the take of 75 ac of occupied scrub-jay habitat, including...

  16. The quest for a unified view of bacterial land colonization

    PubMed Central

    Wu, Hao; Fang, Yongjun; Yu, Jun; Zhang, Zhang

    2014-01-01

    Exploring molecular mechanisms underlying bacterial water-to-land transition represents a critical start toward a better understanding of the functioning and stability of the terrestrial ecosystems. Here, we perform comprehensive analyses based on a large variety of bacteria by integrating taxonomic, phylogenetic and metagenomic data, in the quest for a unified view that elucidates genomic, evolutionary and ecological dynamics of the marine progenitors in adapting to nonaquatic environments. We hypothesize that bacterial land colonization is dominated by a single-gene sweep, that is, the emergence of dnaE2 derived from an early duplication event of the primordial dnaE, followed by a series of niche-specific genomic adaptations, including GC content increase, intensive horizontal gene transfer and constant genome expansion. In addition, early bacterial radiation may be stimulated by an explosion of land-borne hosts (for example, plants and animals) after initial land colonization events. PMID:24451209

  17. Can incentives make a difference? Assessing the effects of policy tools for encouraging tree-planting on private lands.

    PubMed

    Ruseva, Tatyana B; Evans, Tom P; Fischer, Burnell C

    2015-05-15

    This study uses a mail survey of private landowners in the Midwest United States to understand the characteristics of owners who have planted trees or intend to plant trees in the future. The analysis examines what policy tools encourage owners to plant trees, and how policy tools operate across different ownership attributes to promote tree-planting on private lands. Logistic regression results suggest that cost-subsidizing policy tools, such as low-cost and free seedlings, significantly increase the odds of actual and planned reforestation when landowners consider them important for increasing forest cover. Individuals most likely to plant trees, when low-cost seedlings are available and important, are fairly recent (<5 years), college-educated owners who own small parcels (<4 ha) and use the land for recreation. Motivations to reforest were also shaped by owners' planning horizons, connection to the land, previous tree-planting experience, and peer influence. The study has relevance for the design of policy approaches that can encourage private forestation through provision of economic incentives and capacity to private landowners. Copyright © 2015 Elsevier Ltd. All rights reserved.

  18. Effects of spring post-planting flooding on early soybean production systems in Mississippi

    USDA-ARS?s Scientific Manuscript database

    April planting of early-maturing soybean to avoid late-summer drought and to allow early harvest has become a common management practice in Mississippi. However, most of the early-planted soybeans on Sharkey clay soils in Mississippi are often exposed to waterlogged conditions during the early sprin...

  19. Use of reflectance spectroscopy for early detection of calcium deficiency in plants

    NASA Astrophysics Data System (ADS)

    Li, Bingqing; Wah, Liew Oi; Asundi, Anand K.

    2005-04-01

    This article investigates calcium deficiency symptoms of the plants grown under hydroponics conditions. Leaf reflectance data were collected from plants, and then transformed to L*, a*, b* values, which provide color information of the leaves. After comparing the color information of deficient plants to control plants, a set of deficiency criterion was established for early detection of calcium deficiency in the plants. Calcium deficiency could be detected as early as two days from the onset of stress in mature plants when optical data were collected from terminal young leaves. Young plants subjected to calcium stress for 9 days could not be distinguished from nutrient sufficient plants.

  20. Belowground rhizomes in paleosols: The hidden half of an Early Devonian vascular plant

    PubMed Central

    Xue, Jinzhuang; Deng, Zhenzhen; Huang, Pu; Huang, Kangjun; Benton, Michael J.; Cui, Ying; Wang, Deming; Liu, Jianbo; Shen, Bing; Basinger, James F.; Hao, Shougang

    2016-01-01

    The colonization of terrestrial environments by rooted vascular plants had far-reaching impacts on the Earth system. However, the belowground structures of early vascular plants are rarely documented, and thus the plant−soil interactions in early terrestrial ecosystems are poorly understood. Here we report the earliest rooted paleosols (fossil soils) in Asia from Early Devonian deposits of Yunnan, China. Plant traces are extensive within the soil and occur as complex network-like structures, which are interpreted as representing long-lived, belowground rhizomes of the basal lycopsid Drepanophycus. The rhizomes produced large clones and helped the plant survive frequent sediment burial in well-drained soils within a seasonal wet−dry climate zone. Rhizome networks contributed to the accumulation and pedogenesis of floodplain sediments and increased the soil stabilizing effects of early plants. Predating the appearance of trees with deep roots in the Middle Devonian, plant rhizomes have long functioned in the belowground soil ecosystem. This study presents strong, direct evidence for plant−soil interactions at an early stage of vascular plant radiation. Soil stabilization by complex rhizome systems was apparently widespread, and contributed to landscape modification at an earlier time than had been appreciated. PMID:27503883

  1. Selecting plant species for ecological restoration: A perspective for land managers

    Treesearch

    Ray W. Brown; Michael C. Amacher

    1999-01-01

    We recommend in this paper that land managers adopt a policy of mandatory use of native plant species for revegetation and restoration of severe disturbances on wildlands throughout the Interior West. A review of the relative advantages and disadvantages of using introduced and native species suggests that selection criteria based on ecological adaptability and...

  2. The Exotic Plant Problem: Defending Your Lands from an Unfriendly Takeover

    Treesearch

    James H. Miller

    2000-01-01

    Exotic pest plants are marching across the southern landscape and occupying our lands. These foreign invaders-often called non-native, alien, or noxious weeds-occur as trees, shrubs, vines, and grasses. Some have been introduced into this country accidentally, but most were brought here intentionally as omamentals or for livestock forage. They arrived without their...

  3. Land-use intensity and host plant simultaneously shape the composition of arbuscular mycorrhizal fungal communities in a Mediterranean drained peatland.

    PubMed

    Ciccolini, Valentina; Ercoli, Laura; Davison, John; Vasar, Martti; Öpik, Maarja; Pellegrino, Elisa

    2016-12-01

    Land-use change is known to be a major threat to biodiversity and ecosystem services in Mediterranean areas. However, the potential for different host plants to modulate the effect of land-use intensification on community composition of arbuscular mycorrhizal fungi (AMF) is still poorly understood. To test the hypothesis that low land-use intensity promotes AMF diversity at different taxonomic scales and to determine whether any response is dependent upon host plant species identity, we characterised AMF communities in the roots of 10 plant species across four land use types of differing intensity in a Mediterranean peatland system. AMF were identified using 454 pyrosequencing. This revealed an overall low level of AMF richness in the peaty soils; lowest AMF richness in the intense cropping system at both virtual taxa and family level; strong modulation by the host plant of the impact of land-use intensification on AMF communities at the virtual taxa level; and a significant effect of land-use intensification on AMF communities at the family level. These findings have implications for understanding ecosystem stability and productivity and should be considered when developing soil-improvement strategies in fragile ecosystems, such as Mediterranean peatlands. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  4. The early response during the interaction of fungal phytopathogen and host plant.

    PubMed

    Shen, Yilin; Liu, Na; Li, Chuang; Wang, Xin; Xu, Xiaomeng; Chen, Wan; Xing, Guozhen; Zheng, Wenming

    2017-05-01

    Plants can be infected by a variety of pathogens, most of which can cause severe economic losses. The plants resist the invasion of pathogens via the innate or acquired immune system for surviving biotic stress. The associations between plants and pathogens are sophisticated beyond imaging and the interactions between them can occur at a very early stage after their touching each other. A number of researchers in the past decade have shown that many biochemical events appeared even as early as 5 min after their touching for plant disease resistance response. The early molecular interactions of plants and pathogens are likely to involve protein phosphorylation, ion fluxes, reactive oxygen species (ROS) and other signalling transduction. Here, we reviewed the recent progress in the study for molecular interaction response of fungal pathogens and host plant at the early infection stage, which included many economically important crop fungal pathogens such as cereal rust fungi, tomato Cladosporium fulvum , rice blast and so on. By dissecting the earlier infection stage of the diseases, the avirulent/virulent genes of pathogen or resistance genes of plant could be defined more clearly and accurately, which would undoubtedly facilitate fungal pathogenesis study and resistant crop breeding. © 2017 The Authors.

  5. The early response during the interaction of fungal phytopathogen and host plant

    PubMed Central

    Shen, Yilin; Liu, Na; Li, Chuang; Wang, Xin; Xu, Xiaomeng; Chen, Wan; Xing, Guozhen

    2017-01-01

    Plants can be infected by a variety of pathogens, most of which can cause severe economic losses. The plants resist the invasion of pathogens via the innate or acquired immune system for surviving biotic stress. The associations between plants and pathogens are sophisticated beyond imaging and the interactions between them can occur at a very early stage after their touching each other. A number of researchers in the past decade have shown that many biochemical events appeared even as early as 5 min after their touching for plant disease resistance response. The early molecular interactions of plants and pathogens are likely to involve protein phosphorylation, ion fluxes, reactive oxygen species (ROS) and other signalling transduction. Here, we reviewed the recent progress in the study for molecular interaction response of fungal pathogens and host plant at the early infection stage, which included many economically important crop fungal pathogens such as cereal rust fungi, tomato Cladosporium fulvum, rice blast and so on. By dissecting the earlier infection stage of the diseases, the avirulent/virulent genes of pathogen or resistance genes of plant could be defined more clearly and accurately, which would undoubtedly facilitate fungal pathogenesis study and resistant crop breeding. PMID:28469008

  6. Evidence of land plant affinity for the Devonian fossil Protosalvinia (Foerstia)

    USGS Publications Warehouse

    Romankiw, L.A.; Hatcher, P.G.; Roen, J.B.

    1988-01-01

    The Devonian plant fossil Protosalvinia (Foerstia) has been examined by solid-state 13C nuclear magnetic resonance spectroscopy (NMR) and pyrolysis-gas chromatography-mass spectrometry (PY-GC-MS). Results of these studies reveal that the chemical structure of Protosalvinia is remarkably similar to that of coalified wood. A well-defined phenolic carbon peak in the NMR spectra and the appearance of phenol and alkylated phenols in pyrolysis products are clearly indicative of lignin-like compounds. These data represent significant new information on the chemical nature of Protosalvinia and provide the first substantial organic geochemical evidence for land plant affinity. -Authors

  7. Ion and metabolite transport in the chloroplast of algae: lessons from land plants.

    PubMed

    Marchand, Justine; Heydarizadeh, Parisa; Schoefs, Benoît; Spetea, Cornelia

    2018-06-01

    Chloroplasts are endosymbiotic organelles and play crucial roles in energy supply and metabolism of eukaryotic photosynthetic organisms (algae and land plants). They harbor channels and transporters in the envelope and thylakoid membranes, mediating the exchange of ions and metabolites with the cytosol and the chloroplast stroma and between the different chloroplast subcompartments. In secondarily evolved algae, three or four envelope membranes surround the chloroplast, making more complex the exchange of ions and metabolites. Despite the importance of transport proteins for the optimal functioning of the chloroplast in algae, and that many land plant homologues have been predicted, experimental evidence and molecular characterization are missing in most cases. Here, we provide an overview of the current knowledge about ion and metabolite transport in the chloroplast from algae. The main aspects reviewed are localization and activity of the transport proteins from algae and/or of homologues from other organisms including land plants. Most chloroplast transporters were identified in the green alga Chlamydomonas reinhardtii, reside in the envelope and participate in carbon acquisition and metabolism. Only a few identified algal transporters are located in the thylakoid membrane and play role in ion transport. The presence of genes for putative transporters in green algae, red algae, diatoms, glaucophytes and cryptophytes is discussed, and roles in the chloroplast are suggested. A deep knowledge in this field is required because algae represent a potential source of biomass and valuable metabolites for industry, medicine and agriculture.

  8. Plant pathogens but not antagonists change in soil fungal communities across a land abandonment gradient in a Mediterranean landscape

    NASA Astrophysics Data System (ADS)

    Bosso, L.; Lacatena, F.; Varlese, R.; Nocerino, S.; Cristinzio, G.; Russo, D.

    2017-01-01

    We assessed whether the presence and abundance of plant pathogens and antagonists change in soil fungal communities along a land abandonment gradient. The study was carried out in the Cilento area (Southern Italy) at a site with three different habitats found along a land abandonment gradient: agricultural land, Mediterranean shrubland and woodland. For all microbiological substrates the colony forming units were about 3.1 × 106 g-1 soil for agricultural land and about 1.1 × 106 g-1 soil for Mediterranean shrubland and woodland. We found the following genera in all habitats: Cladosporium, Mortierella, Penicillium and Trichoderma. In agricultural land, the significantly most abundant fungus genera were Aspergillus, Fusarium, Cylindrocarpon and Nectria; in Mediterranean shrubland, Rhizopus and Trichoderma; and in woodland, Bionectria, Mortierella, Cladosporium, Diplodia, Paecilomyces, Penicillium and Trichoderma. We found a total of 8, 8 and 9 species of fungal antagonist, and 16, 6 and 6 species of fungal plant pathogens in agricultural land, Mediterranean shrubland and woodland respectively. Fungal plant pathogens decreased significantly over a land abandonment gradient, while we no found significant differences among fungal antagonists in the three habitats. We conclude that a decrease in the number of fungal pathogen species occurs when formerly cultivated areas are abandoned. On the other hand, fungal antagonists seem not to be affected by this process.

  9. Urban land use decouples plant-herbivore-parasitoid interactions at multiple spatial scales.

    PubMed

    Nelson, Amanda E; Forbes, Andrew A

    2014-01-01

    Intense urban and agricultural development alters habitats, increases fragmentation, and may decouple trophic interactions if plants or animals cannot disperse to needed resources. Specialist insects represent a substantial proportion of global biodiversity and their fidelity to discrete microhabitats provides a powerful framework for investigating organismal responses to human land use. We sampled site occupancy and densities for two plant-herbivore-parasitoid systems from 250 sites across a 360 km2 urban/agricultural landscape to ask whether and how human development decouples interactions between trophic levels. We compared patterns of site occupancy, host plant density, herbivory and parasitism rates of insects at two trophic levels with respect to landcover at multiple spatial scales. Geospatial analyses were used to identify landcover characters predictive of insect distributions. We found that herbivorous insect densities were decoupled from host tree densities in urban landcover types at several spatial scales. This effect was amplified for the third trophic level in one of the two insect systems: despite being abundant regionally, a parasitoid species was absent from all urban/suburban landcover even where its herbivore host was common. Our results indicate that human land use patterns limit distributions of specialist insects. Dispersal constraints associated with urban built development are specifically implicated as a limiting factor.

  10. Urban Land Use Decouples Plant-Herbivore-Parasitoid Interactions at Multiple Spatial Scales

    PubMed Central

    Nelson, Amanda E.; Forbes, Andrew A.

    2014-01-01

    Intense urban and agricultural development alters habitats, increases fragmentation, and may decouple trophic interactions if plants or animals cannot disperse to needed resources. Specialist insects represent a substantial proportion of global biodiversity and their fidelity to discrete microhabitats provides a powerful framework for investigating organismal responses to human land use. We sampled site occupancy and densities for two plant-herbivore-parasitoid systems from 250 sites across a 360 km2 urban/agricultural landscape to ask whether and how human development decouples interactions between trophic levels. We compared patterns of site occupancy, host plant density, herbivory and parasitism rates of insects at two trophic levels with respect to landcover at multiple spatial scales. Geospatial analyses were used to identify landcover characters predictive of insect distributions. We found that herbivorous insect densities were decoupled from host tree densities in urban landcover types at several spatial scales. This effect was amplified for the third trophic level in one of the two insect systems: despite being abundant regionally, a parasitoid species was absent from all urban/suburban landcover even where its herbivore host was common. Our results indicate that human land use patterns limit distributions of specialist insects. Dispersal constraints associated with urban built development are specifically implicated as a limiting factor. PMID:25019962

  11. [Assessment and early warning of land ecological security in rapidly urbanizing coastal area: A case study of Caofeidian new district, Hebei, China].

    PubMed

    Zhang, Li; Chen, Ying; Wang, Shu-tao; Men, Ming-xin; Xu, Hao

    2015-08-01

    Assessment and early warning of land ecological security (LES) in rapidly urbanizing coastal area is an important issue to ensure sustainable land use and effective maintenance of land ecological security. In this study, an index system for the land ecological security of Caofeidian new district was established based on the Pressure-State-Response (P-S-R) model. Initial assessment units of 1 km x 1 km created with the remote sensing data and GIS methods were spatially interpolated to a fine pixel size of 30 m x 30 m, which were combined with the early warning method (using classification tree method) to evaluate the land ecological security of Caofeidian in 2005 and 2013. The early warning level was classed into four categories: security with degradation potential, sub-security with slow degradation, sub-security with rapid degradation, and insecurity. Result indicated that, from 2005 to 2013, the average LES of Caofeidian dropped from 0.55 to 0.52, indicating a degradation of land ecological security from medium security level to medium-low security level. The areas at the levels of insecurity with rapid degradation were mainly located in the rapid urbanization areas, illustrating that rapid expansion of urban construction land was the key factor to the deterioration of the regional land ecological security. Industrial District, Shilihai town and Nanpu saltern, in which the lands at the levels of insecurity and sub-security with rapid degradation or slow degradation accounted for 58.3%, 98.9% and 81.2% of their respective districts, were at the stage of high early warning. Thus, land ecological security regulation for these districts should be strengthened in near future. The study could provide a reference for land use planning and ecological protection of Caofeidian new district.

  12. Fossil evidence for a herbaceous diversification of early eudicot angiosperms during the Early Cretaceous

    PubMed Central

    Jud, Nathan A.

    2015-01-01

    Eudicot flowering plants comprise roughly 70% of land plant species diversity today, but their early evolution is not well understood. Fossil evidence has been largely restricted to their distinctive tricolpate pollen grains and this has limited our understanding of the ecological strategies that characterized their primary radiation. I describe megafossils of an Early Cretaceous eudicot from the Potomac Group in Maryland and Virginia, USA that are complete enough to allow reconstruction of important life-history traits. I draw on quantitative and qualitative analysis of functional traits, phylogenetic analysis and sedimentological evidence to reconstruct the biology of this extinct species. These plants were small and locally rare but widespread, fast-growing herbs. They had complex leaves and they were colonizers of bright, wet, disturbance-prone habitats. Other early eudicot megafossils appear to be herbaceous rather than woody, suggesting that this habit was characteristic of their primary radiation. A mostly herbaceous initial diversification of eudicots could simultaneously explain the heretofore sparse megafossil record as well as their rapid diversification during the Early Cretaceous because the angiosperm capacity for fast reproduction and fast evolution is best expressed in herbs. PMID:26336172

  13. Fossil evidence for a herbaceous diversification of early eudicot angiosperms during the Early Cretaceous.

    PubMed

    Jud, Nathan A

    2015-09-07

    Eudicot flowering plants comprise roughly 70% of land plant species diversity today, but their early evolution is not well understood. Fossil evidence has been largely restricted to their distinctive tricolpate pollen grains and this has limited our understanding of the ecological strategies that characterized their primary radiation. I describe megafossils of an Early Cretaceous eudicot from the Potomac Group in Maryland and Virginia, USA that are complete enough to allow reconstruction of important life-history traits. I draw on quantitative and qualitative analysis of functional traits, phylogenetic analysis and sedimentological evidence to reconstruct the biology of this extinct species. These plants were small and locally rare but widespread, fast-growing herbs. They had complex leaves and they were colonizers of bright, wet, disturbance-prone habitats. Other early eudicot megafossils appear to be herbaceous rather than woody, suggesting that this habit was characteristic of their primary radiation. A mostly herbaceous initial diversification of eudicots could simultaneously explain the heretofore sparse megafossil record as well as their rapid diversification during the Early Cretaceous because the angiosperm capacity for fast reproduction and fast evolution is best expressed in herbs. © 2015 The Author(s).

  14. Terrigenous fluxes of pollen, insect scale and land plant palynodebris observed by sediment traps deployed in the subarctic Pacific

    NASA Astrophysics Data System (ADS)

    Tsutsui, H.; Takahashi, K.; Matsuoka, K.; Jordan, R. W.; Yamamoto, S.

    2016-02-01

    From 1990 to 2009, sediment traps were deployed and recovered in the subarctic Pacific (Station SA; 49°N, 174°W) during each summer, allowing the long-term observation of particle fluxes. As the Pacific Decadal Oscillation index changed in 1999 while air temperatures cooled, this study focused on pollen, land plant debris and insect scale fluxes during 1994 to 2009 at Station SA. The maximum pollen and fern spores flux was 644 grains m2 d-1, with a mean of 74 grains m2 d-1and the following details: 65% of the total pollen counts represented by wind-pollinated trees (e.g., alder, birch and pine), 24% by the herbaceous plants, and 11% by fern spores. Spore, herbaceous and wind-pollinated tree pollen fluxes peaked primarily in May (and sporadically also in April and June) and September-October. The annual flux peaks of insect scales (of unknown origin) and land-plant debris were in May and September, but over the entire study period the maximum insect scale flux of 161 scales m2 d-1 was in August 2002, with a mean of 16 scales m2 d-1. Furthermore, the maximum (in August 2004) and mean land-plant debris fluxes were 107 and 10 plant fragments m2 d-1, respectively. The sediment traps were situated at southern side of the Aleutian Islands, where snow and ice occurred for six months from October to May. The ice-snow season accounts for 25% of the total annual particle flux, with 75% throughout the rest of the year. The correlation coefficient among pollen, insect scales and land plant debris are: 1) 0.58 (probability <1%) between wind-pollinated plant pollen and insect scales, and 2) 0.75 (probability <5%) between herbaceous plant pollen and land plant debris. The production locations, residence time, routes and mode of transport of the particles are important factors. The pollen fluxes observed during April to June appeared to have originated from the Western Alaska, but during the rest of years they appeared to have been from the eastern Russia. That pollen and other

  15. Integrated Land- and Underwater-Based Sensors for a Subduction Zone Earthquake Early Warning System

    NASA Astrophysics Data System (ADS)

    Pirenne, B.; Rosenberger, A.; Rogers, G. C.; Henton, J.; Lu, Y.; Moore, T.

    2016-12-01

    Ocean Networks Canada (ONC — oceannetworks.ca/ ) operates cabled ocean observatories off the coast of British Columbia (BC) to support research and operational oceanography. Recently, ONC has been funded by the Province of BC to deliver an earthquake early warning (EEW) system that integrates offshore and land-based sensors to deliver alerts of incoming ground shaking from the Cascadia Subduction Zone. ONC's cabled seismic network has the unique advantage of being located offshore on either side of the surface expression of the subduction zone. The proximity of ONC's sensors to the fault can result in faster, more effective warnings, which translates into more lives saved, injuries avoided and more ability for mitigative actions to take place.ONC delivers near real-time data from various instrument types simultaneously, providing distinct advantages to seismic monitoring and earthquake early warning. The EEW system consists of a network of sensors, located on the ocean floor and on land, that detect and analyze the initial p-wave of an earthquake as well as the crustal deformation on land during the earthquake sequence. Once the p-wave is detected and characterized, software systems correlate the data streams of the various sensors and deliver alerts to clients through a Common Alerting Protocol-compliant data package. This presentation will focus on the development of the earthquake early warning capacity at ONC. It will describe the seismic sensors and their distribution, the p-wave detection algorithms selected and the overall architecture of the system. It will further overview the plan to achieve operational readiness at project completion.

  16. The Effect of Hydroelectric Power Plants (hpp) on Agro-Life at Rural Land Regulation in Turkey

    NASA Astrophysics Data System (ADS)

    Onursal Denli, G.; Denli, H. H.; Seker, D. Z.; Bitik, E.; Cetin, S.

    2014-12-01

    Turkey is one of the self-sufficient in foodstuffs and globally ranks as 7th significant agricultural exporter in the world. Main trading partners are the European Union, the United States and the Middle East. As known, agricultural production is dependent on factors including efficient and effective use of all inputs ranging from those natural resources as in land and water to well-trained human resources as labour at the production. The socio-economic aspects of this sector take several forms ranging from the incomes of the primary producers. Rural land regulation is a necessity for rural areas and is regarded as a useful instrument for improving farmer's incomes and life standards. The irrigation system, established during the rural regulation/land consolidation period of large-scale farming, is insufficiently adjusted to the new land tenure structures. The government is especially in the process of water management with hydroelectric power plants. This process produces energy that is required but effects negatively the rivers and agricultural, environmental, climatic conditions. Rivers are vessels of the nature. Free flowing rivers give life to all nature. Most of the studies indicate that Hydroelectric Power Plants (HPP) affects the surface and ground-water management, natural life, agricultural productivity, socio-economic situation at agricultural regions and agro-life related with immigration. This study emphasizes the effect of Hydroelectric Power Plants which are used in transformation of water as a renewable natural resource into electricity power from the perspective of environmental policies and rural regulation.

  17. Contrasting land uses in Mediterranean agro-silvo-pastoral systems generated patchy diversity patterns of vascular plants and below-ground microorganisms.

    PubMed

    Bagella, Simonetta; Filigheddu, Rossella; Caria, Maria Carmela; Girlanda, Mariangela; Roggero, Pier Paolo

    2014-12-01

    The aims of this paper were (i) to define how contrasting land uses affected plant biodiversity in Mediterranean agro-silvo-pastoral-systems across a gradient of disturbance regimes: cork oak forests, secondary grasslands, hay crops, grass covered vineyards, tilled vineyards; (ii) to determine whether these patterns mirrored those of below-ground microorganisms and whether the components of γ-diversity followed a similar model. The disturbance regimes affected plant assemblage composition. Species richness decreased with increasing land use intensity, the Shannon index showed the highest values in grasslands and hay crops. Plant assemblage composition patterns mirrored those of Basidiomycota and Ascomycota. Richness in Basidiomycota, denitrifying bacteria and microbial biomass showed the same trend as that observed for vascular plant richness. The Shannon index pattern of below-ground microorganisms was different from that of plants. The plant γ-diversity component model weakly mirrored those of Ascomycota. Patchy diversity patterns suggest that the maintenance of contrasting land uses associated with different productions typical of agro-silvo-pastoral-systems can guarantee the conservation of biodiversity. Copyright © 2014 Académie des sciences. Published by Elsevier SAS. All rights reserved.

  18. Improving land surface parameter retrieval by integrating plant traits priors in the MULTIPLY data assimilation platform

    NASA Astrophysics Data System (ADS)

    Corbin, A. E.; Timmermans, J.; Hauser, L.; Bodegom, P. V.; Soudzilovskaia, N. A.

    2017-12-01

    There is a growing demand for accurate land surface parameterization from remote sensing (RS) observations. This demand has not been satisfied, because most estimation schemes apply 1) a single-sensor single-scale approach, and 2) require specific key-variables to be `guessed'. This is because of the relevant observational information required to accurately retrieve parameters of interest. Consequently, many schemes assume specific variables to be constant or not present; subsequently leading to more uncertainty. In this aspect, the MULTIscale SENTINEL land surface information retrieval Platform (MULTIPLY) was created. MULTIPLY couples a variety of RS sources with Radiative Transfer Models (RTM) over varying spectral ranges using data-assimilation to estimate geophysical parameters. In addition, MULTIPLY also uses prior information about the land surface to constrain the retrieval problem. This research aims to improve the retrieval of plant biophysical parameters through the use of priors of biophysical parameters/plant traits. Of particular interest are traits (physical, morphological or chemical trait) affecting individual performance and fitness of species. Plant traits that are able to be retrieved via RS and with RTMs include traits such as leaf-pigments, leaf water, LAI, phenols, C/N, etc. In-situ data for plant traits that are retrievable via RS techniques were collected for a meta-analysis from databases such as TRY, Ecosis, and individual collaborators. Of particular interest are the following traits: chlorophyll, carotenoids, anthocyanins, phenols, leaf water, and LAI. ANOVA statistics were generated for each traits according to species, plant functional groups (such as evergreens, grasses, etc.), and the trait itself. Afterwards, traits were also compared using covariance matrices. Using these as priors, MULTIPLY was is used to retrieve several plant traits in two validation sites in the Netherlands (Speulderbos) and in Finland (Sodankylä). Initial

  19. Cultural plant harvests on federal lands: perspectives from members of the Northwest Native American Basketweavers Association

    Treesearch

    Rebecca Dobkins; Ceara Lewis; Susan Hummel; Emily. Dickey

    2016-01-01

    Native Americans who wish to harvest forest plants for traditional uses report difficulties gaining access to federal lands in the northwestern United States. To learn more about this issue, we reviewed the published literature on site access and resource harvests by tribal members and discussed it with Native American traditional users of plant resources. Specifically...

  20. Effects of surrounding land use on metal accumulation in environments and submerged plants in subtropical ponds.

    PubMed

    Liu, Hui; Bu, Hongmei; Liu, Guihua; Wang, Zhixiu; Liu, Wenzhi

    2015-12-01

    Ponds are widely used as stormwater treatment facilities to retain contaminants, including metals, and to improve water quality throughout the world. However, there is still a limited understanding of the effects of surrounding land use on metal accumulation in pond environments and organisms. To address this gap, we measured the concentrations of nine metals (i.e., Al, Ba, Ca, K, Li, Mg, Na, Se, and Sr) in water, sediments, and submerged plants collected from 37 ponds with different surrounding land uses in southwestern China and assessed the metal accumulation capacity of four dominant submerged plant species. Our results showed that Al, Ca, and K concentrations in the water were above drinking water standards. In the sediments, the average concentrations of Ca and Sr were higher than the corresponding soil background values. Ceratophyllum demersum L. could accumulate more K in aboveground biomass than Myriophyllum spicatum L. and Potamogeton maackianus A. Benn. The K concentration in submerged plants was positively influenced by the corresponding metal concentration in the water and negatively influenced by water temperature. Among the nine studied metals, only the water K concentration in ponds receiving agricultural runoff was significantly higher than that for ponds receiving urban and forested runoff. This result suggests that surrounding land use types have no significant effect on metal accumulation in sediments and submerged plants in the studied ponds. A large percentage of the metals in these ponds may be derived from natural sources such as the weathering of rocks.

  1. Parametric study of potential early commercial MHD power plants

    NASA Technical Reports Server (NTRS)

    Hals, F. A.

    1979-01-01

    Three different reference power plant configurations were considered with parametric variations of the various design parameters for each plant. Two of the reference plant designs were based on the use of high temperature regenerative air preheaters separately fired by a low Btu gas produced from a coal gasifier which was integrated with the power plant. The third reference plant design was based on the use of oxygen enriched combustion air preheated to a more moderate temperature in a tubular type metallic recuperative heat exchanger which is part of the bottoming plant heat recovery system. Comparative information was developed on plant performance and economics. The highest net plant efficiency of about 45 percent was attained by the reference plant design with the use of a high temperature air preheater separately fired with the advanced entrained bed gasifier. The use of oxygen enrichment of the combustion air yielded the lowest cost of generating electricity at a slightly lower plant efficiency. Both of these two reference plant designs are identified as potentially attractive for early MHD power plant applications.

  2. Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants.

    PubMed

    Civaň, Peter; Foster, Peter G; Embley, Martin T; Séneca, Ana; Cox, Cymon J

    2014-04-01

    Despite the significance of the relationships between embryophytes and their charophyte algal ancestors in deciphering the origin and evolutionary success of land plants, few chloroplast genomes of the charophyte algae have been reconstructed to date. Here, we present new data for three chloroplast genomes of the freshwater charophytes Klebsormidium flaccidum (Klebsormidiophyceae), Mesotaenium endlicherianum (Zygnematophyceae), and Roya anglica (Zygnematophyceae). The chloroplast genome of Klebsormidium has a quadripartite organization with exceptionally large inverted repeat (IR) regions and, uniquely among streptophytes, has lost the rrn5 and rrn4.5 genes from the ribosomal RNA (rRNA) gene cluster operon. The chloroplast genome of Roya differs from other zygnematophycean chloroplasts, including the newly sequenced Mesotaenium, by having a quadripartite structure that is typical of other streptophytes. On the basis of the improbability of the novel gain of IR regions, we infer that the quadripartite structure has likely been lost independently in at least three zygnematophycean lineages, although the absence of the usual rRNA operonic synteny in the IR regions of Roya may indicate their de novo origin. Significantly, all zygnematophycean chloroplast genomes have undergone substantial genomic rearrangement, which may be the result of ancient retroelement activity evidenced by the presence of integrase-like and reverse transcriptase-like elements in the Roya chloroplast genome. Our results corroborate the close phylogenetic relationship between Zygnematophyceae and land plants and identify 89 protein-coding genes and 22 introns present in the chloroplast genome at the time of the evolutionary transition of plants to land, all of which can be found in the chloroplast genomes of extant charophytes.

  3. Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants

    PubMed Central

    Civáň, Peter; Foster, Peter G.; Embley, Martin T.; Séneca, Ana; Cox, Cymon J.

    2014-01-01

    Despite the significance of the relationships between embryophytes and their charophyte algal ancestors in deciphering the origin and evolutionary success of land plants, few chloroplast genomes of the charophyte algae have been reconstructed to date. Here, we present new data for three chloroplast genomes of the freshwater charophytes Klebsormidium flaccidum (Klebsormidiophyceae), Mesotaenium endlicherianum (Zygnematophyceae), and Roya anglica (Zygnematophyceae). The chloroplast genome of Klebsormidium has a quadripartite organization with exceptionally large inverted repeat (IR) regions and, uniquely among streptophytes, has lost the rrn5 and rrn4.5 genes from the ribosomal RNA (rRNA) gene cluster operon. The chloroplast genome of Roya differs from other zygnematophycean chloroplasts, including the newly sequenced Mesotaenium, by having a quadripartite structure that is typical of other streptophytes. On the basis of the improbability of the novel gain of IR regions, we infer that the quadripartite structure has likely been lost independently in at least three zygnematophycean lineages, although the absence of the usual rRNA operonic synteny in the IR regions of Roya may indicate their de novo origin. Significantly, all zygnematophycean chloroplast genomes have undergone substantial genomic rearrangement, which may be the result of ancient retroelement activity evidenced by the presence of integrase-like and reverse transcriptase-like elements in the Roya chloroplast genome. Our results corroborate the close phylogenetic relationship between Zygnematophyceae and land plants and identify 89 protein-coding genes and 22 introns present in the chloroplast genome at the time of the evolutionary transition of plants to land, all of which can be found in the chloroplast genomes of extant charophytes. PMID:24682153

  4. The Evolution of Land Plants and the Silicate Weathering Feedback

    NASA Astrophysics Data System (ADS)

    Ibarra, D. E.; Caves Rugenstein, J. K.; Bachan, A.; Baresch, A.; Lau, K. V.; Thomas, D.; Lee, J. E.; Boyce, C. K.; Chamberlain, C. P.

    2017-12-01

    It has long been recognized that the advent of vascular plants in the Paleozoic must have changed silicate weathering and fundamentally altered the long-term carbon cycle. Efforts to quantify these effects have been formulated in carbon cycle models that are, in part, calibrated by weathering studies of modern plant communities. In models of the long-term carbon cycle, plants play a key role in controlling atmospheric CO2, particularly in the late Paleozoic. We test the impact of some established and recent theories regarding plant-enhanced weathering by coupling a one-dimensional vapor transport model to a reactive transport model of silicate weathering. In this coupled model, we evaluate consequences of plant evolutionary innovation that have not been mechanistically incorporated into most existing models: 1) the role of evolutionary shifts in plant transpiration in enhancing silicate weathering by increasing downwind transport and recycling of water vapor to continental interiors; 2) the importance of deeply-rooted plants and their associated microbial communities in increasing soil CO2 and weathering zone length scales; and, 3) the cumulative effect of these processes. Our modeling approach is framed by energy/supply constraints calibrated for minimally vegetated-, vascular plant forested-, and angiosperm-worlds. We find that the emergence of widespread transpiration and associated inland vapor recycling approximately doubles weathering solute concentrations when deep-rooted vascular plants (Devonian-Carboniferous) fully replace a minimally vegetated (pre-Devonian) world. The later evolution of angiosperms (Cretaceous and Cenozoic) and subsequent increase in transpiration fluxes increase weathering solute concentrations by approximately an additional 20%. Our estimates of the changes in weatherability caused by land plant evolution are of a similar magnitude, but explained with new process-based mechanisms, than those used in existing carbon cycle models. We

  5. Influence of planting stocks on the survival and growth of Nuttall and cherrybark oak planted on lands damaged by Hurricane Katrina

    Treesearch

    Derek K. Alkire; James C. Rainer; Andrew B. Self; Andrew W. Ezell; Andrew J. Londo; Emily B. Schultz

    2013-01-01

    Bare-root, container, and root production method (RPMTM) seedlings of Nuttall oak (Quercus texana Buckley) and cherrybark oak (Q. pagoda Ell.) were planted on lands damaged by Hurricane Katrina in southern Mississippi to compare the height growth, groundline diameter (GLD) growth, and survival of the...

  6. The Exotic Plant Problem: Defending Your Lands from an Unfriendly Takeover Part II

    Treesearch

    James H. Miller

    2000-01-01

    Exotic pest plants are marching across the southern landscape and occupying our lands. These foreign invaders-often called non-native, alien, or noxious weeds-occur as trees, shrubs, vines, and grasses. Some have been introduced into this country accidentally, but most were brought here intentionally as omamentals or for livestock forage. They arrived without their...

  7. The origin and early evolution of vascular plant shoots and leaves.

    PubMed

    Harrison, C Jill; Morris, Jennifer L

    2018-02-05

    The morphology of plant fossils from the Rhynie chert has generated longstanding questions about vascular plant shoot and leaf evolution, for instance, which morphologies were ancestral within land plants, when did vascular plants first arise and did leaves have multiple evolutionary origins? Recent advances combining insights from molecular phylogeny, palaeobotany and evo-devo research address these questions and suggest the sequence of morphological innovation during vascular plant shoot and leaf evolution. The evidence pinpoints testable developmental and genetic hypotheses relating to the origin of branching and indeterminate shoot architectures prior to the evolution of leaves, and demonstrates underestimation of polyphyly in the evolution of leaves from branching forms in 'telome theory' hypotheses of leaf evolution. This review discusses fossil, developmental and genetic evidence relating to the evolution of vascular plant shoots and leaves in a phylogenetic framework.This article is part of a discussion meeting issue 'The Rhynie cherts: our earliest terrestrial ecosystem revisited'. © 2017 The Authors.

  8. The origin and early evolution of vascular plant shoots and leaves

    PubMed Central

    2018-01-01

    The morphology of plant fossils from the Rhynie chert has generated longstanding questions about vascular plant shoot and leaf evolution, for instance, which morphologies were ancestral within land plants, when did vascular plants first arise and did leaves have multiple evolutionary origins? Recent advances combining insights from molecular phylogeny, palaeobotany and evo–devo research address these questions and suggest the sequence of morphological innovation during vascular plant shoot and leaf evolution. The evidence pinpoints testable developmental and genetic hypotheses relating to the origin of branching and indeterminate shoot architectures prior to the evolution of leaves, and demonstrates underestimation of polyphyly in the evolution of leaves from branching forms in ‘telome theory’ hypotheses of leaf evolution. This review discusses fossil, developmental and genetic evidence relating to the evolution of vascular plant shoots and leaves in a phylogenetic framework. This article is part of a discussion meeting issue ‘The Rhynie cherts: our earliest terrestrial ecosystem revisited’. PMID:29254961

  9. Group A PP2Cs evolved in land plants as key regulators of intrinsic desiccation tolerance

    PubMed Central

    Komatsu, Kenji; Suzuki, Norihiro; Kuwamura, Mayuri; Nishikawa, Yuri; Nakatani, Mao; Ohtawa, Hitomi; Takezawa, Daisuke; Seki, Motoaki; Tanaka, Maho; Taji, Teruaki; Hayashi, Takahisa; Sakata, Yoichi

    2013-01-01

    Vegetative desiccation tolerance is common in bryophytes, although this character has been lost in most vascular plants. The moss Physcomitrella patens survives complete desiccation if treated with abscisic acid (ABA). Group A protein phosphatases type 2C (PP2C) are negative regulators of abscisic acid signalling. Here we show that the elimination of Group A PP2C is sufficient to ensure P. patens survival to full desiccation, without ABA treatment, although its growth is severely hindered. Microarray analysis shows that the Group A PP2C-regulated genes exclusively overlap with genes exhibiting a high level of ABA induction. Group A PP2C disruption weakly affects ABA-activated kinase activity, indicating Group A PP2C action downstream of these kinases in the moss. We propose that Group A PP2C emerged in land plants to repress desiccation tolerance mechanisms, possibly facilitating plants propagation on land, whereas ABA releases the intrinsic desiccation tolerance from Group A PP2C regulation. PMID:23900426

  10. The Mitochondrial Genome of Chara vulgaris: Insights into the Mitochondrial DNA Architecture of the Last Common Ancestor of Green Algae and Land PlantsW⃞

    PubMed Central

    Turmel, Monique; Otis, Christian; Lemieux, Claude

    2003-01-01

    Mitochondrial DNA (mtDNA) has undergone radical changes during the evolution of green plants, yet little is known about the dynamics of mtDNA evolution in this phylum. Land plant mtDNAs differ from the few green algal mtDNAs that have been analyzed to date by their expanded size, long spacers, and diversity of introns. We have determined the mtDNA sequence of Chara vulgaris (Charophyceae), a green alga belonging to the charophycean order (Charales) that is thought to be the most closely related alga to land plants. This 67,737-bp mtDNA sequence, displaying 68 conserved genes and 27 introns, was compared with those of three angiosperms, the bryophyte Marchantia polymorpha, the charophycean alga Chaetosphaeridium globosum (Coleochaetales), and the green alga Mesostigma viride. Despite important differences in size and intron composition, Chara mtDNA strikingly resembles Marchantia mtDNA; for instance, all except 9 of 68 conserved genes lie within blocks of colinear sequences. Overall, our genome comparisons and phylogenetic analyses provide unequivocal support for a sister-group relationship between the Charales and the land plants. Only four introns in land plant mtDNAs appear to have been inherited vertically from a charalean algar ancestor. We infer that the common ancestor of green algae and land plants harbored a tightly packed, gene-rich, and relatively intron-poor mitochondrial genome. The group II introns in this ancestral genome appear to have spread to new mtDNA sites during the evolution of bryophytes and charalean green algae, accounting for part of the intron diversity found in Chara and land plant mitochondria. PMID:12897260

  11. Representing Plant Hydraulics in a Global Model: Updates to the Community Land Model

    NASA Astrophysics Data System (ADS)

    Kennedy, D.; Swenson, S. C.; Oleson, K. W.; Lawrence, D. M.; Fisher, R.; Gentine, P.

    2017-12-01

    In previous versions, the Community Land Model has used soil moisture to stand in for plant water status, with transpiration and photosynthesis driven directly by soil water potential. This eschews significant literature demonstrating the importance of plant hydraulic traits in the dynamics of water flow through the soil-plant-atmosphere continuum and in the regulation of stomatal aperture. In this study we install a simplified hydraulic framework to represent vegetation water potential and to regulate root water uptake and turbulent fluxes. Plant hydraulics allow for a more explicit representation of plant water status, which improves the physical basis for many processes represented in CLM. This includes root water uptake and the attenuation of photosynthesis and transpiration with drought. Model description is accompanied by results from a point simulation based at the Caxiuanã flux tower site in Eastern Amazonia, covering a throughfall exclusion experiment from 2001-2003. Including plant hydraulics improves the response to drought forcing compared to previous versions of CLM. Parameter sensitivity is examined at the same site and presented in the context of estimating hydraulic parameters in a global model.

  12. Early competition shapes maize whole-plant development in mixed stands

    PubMed Central

    Evers, Jochem B.

    2014-01-01

    Mixed cropping is practised widely in developing countries and is gaining increasing interest for sustainable agriculture in developed countries. Plants in intercrops grow differently from plants in single crops, due to interspecific plant interactions, but adaptive plant morphological responses to competition in mixed stands have not been studied in detail. Here the maize (Zea mays) response to mixed cultivation with wheat (Triticum aestivum) is described. Evidence is provided that early responses of maize to the modified light environment in mixed stands propagate throughout maize development, resulting in different phenotypes compared with pure stands. Photosynthetically active radiation (PAR), red:far-red ratio (R:FR), leaf development, and final organ sizes of maize grown in three cultivation systems were compared: pure maize, an intercrop with a small distance (25cm) between maize and wheat plants, and an intercop with a large distance (44cm) between the maize and the wheat. Compared with maize in pure stands, maize in the mixed stands had lower leaf and collar appearance rates, increased blade and sheath lengths at low ranks and smaller sizes at high ranks, increased blade elongation duration, and decreased R:FR and PAR at the plant base during early development. Effects were strongest in the treatment with a short distance between wheat and maize strips. The data suggest a feedback between leaf initiation and leaf emergence at the plant level and coordination between blade and sheath growth at the phytomer level. A conceptual model, based on coordination rules, is proposed to explain the development of the maize plant in pure and mixed stands. PMID:24307719

  13. Projecting large-scale area changes in land use and land cover for terrestrial carbon analyses.

    PubMed

    Alig, Ralph J; Butler, Brett J

    2004-04-01

    One of the largest changes in US forest type areas over the last half-century has involved pine types in the South. The area of planted pine has increased more than 10-fold since 1950, mostly on private lands. Private landowners have responded to market incentives and government programs, including subsidized afforestation on marginal agricultural land. Timber harvest is a crucial disturbance affecting planted pine area, as other forest types are converted to planted pine after harvest. Conversely, however, many harvested pine plantations revert to other forest types, mainly due to passive regeneration behavior on nonindustrial private timberlands. We model land use and land cover changes as a basis for projecting future changes in planted pine area, to aid policy analysts concerned with mitigation activities for global climate change. Projections are prepared in two stages. Projected land use changes include deforestation due to pressures to develop rural land as the human population expands, which is a larger area than that converted from other rural lands (e.g., agriculture) to forestry. In the second stage, transitions among forest types are projected on land allocated to forestry. We consider reforestation, influences of timber harvest, and natural succession and disturbance processes. Baseline projections indicate a net increase of about 5.6 million ha in planted pine area in the South over the next 50 years, with a notable increase in sequestered carbon. Additional opportunities to expand pine plantation area warrant study of landowner behavior to aid in designing more effective incentives for inducing land use and land cover changes to help mitigate climate change and attain other goals.

  14. Vascular-mediated signalling involved in early phosphate stress response in plants.

    PubMed

    Zhang, Zhaoliang; Zheng, Yi; Ham, Byung-Kook; Chen, Jieyu; Yoshida, Akiko; Kochian, Leon V; Fei, Zhangjun; Lucas, William J

    2016-04-04

    Depletion of finite global rock phosphate (Pi) reserves will impose major limitations on future agricultural productivity and food security. Hence, modern breeding programmes seek to develop Pi-efficient crops with sustainable yields under reduced Pi fertilizer inputs. In this regard, although the long-term responses of plants to Pi stress are well documented, the early signalling events have yet to be elucidated. Here, we show plant tissue-specific responses to early Pi stress at the transcription level and a predominant role of the plant vascular system in this process. Specifically, imposition of Pi stress induces rapid and major changes in the mRNA population in the phloem translocation stream, and grafting studies have revealed that many hundreds of phloem-mobile mRNAs are delivered to specific sink tissues. We propose that the shoot vascular system acts as the site of root-derived Pi stress perception, and the phloem serves to deliver a cascade of signals to various sinks, presumably to coordinate whole-plant Pi homeostasis.

  15. Water, plants, and early human habitats in eastern Africa

    PubMed Central

    Magill, Clayton R.; Ashley, Gail M.; Freeman, Katherine H.

    2013-01-01

    Water and its influence on plants likely exerted strong adaptive pressures in human evolution. Understanding relationships among water, plants, and early humans is limited both by incomplete terrestrial records of environmental change and by indirect proxy data for water availability. Here we present a continuous record of stable hydrogen-isotope compositions (expressed as δD values) for lipid biomarkers preserved in lake sediments from an early Pleistocene archaeological site in eastern Africa—Olduvai Gorge. We convert sedimentary leaf- and algal-lipid δD values into estimates for ancient source-water δD values by accounting for biochemical, physiological, and environmental influences on isotopic fractionation via published water–lipid enrichment factors for living plants, algae, and recent sediments. Reconstructed precipitation and lake-water δD values, respectively, are consistent with modern isotopic hydrology and reveal that dramatic fluctuations in water availability accompanied ecosystem changes. Drier conditions, indicated by less negative δD values, occur in association with stable carbon-isotopic evidence for open, C4-dominated grassland ecosystems. Wetter conditions, indicated by lower δD values, are associated with expanded woody cover across the ancient landscape. Estimates for ancient precipitation amounts, based on reconstructed precipitation δD values, range between approximately 250 and 700 mm·y−1 and are consistent with modern precipitation data for eastern Africa. We conclude that freshwater availability exerted a substantial influence on eastern African ecosystems and, by extension, was central to early human proliferation during periods of rapid climate change. PMID:23267102

  16. Water, plants, and early human habitats in eastern Africa.

    PubMed

    Magill, Clayton R; Ashley, Gail M; Freeman, Katherine H

    2013-01-22

    Water and its influence on plants likely exerted strong adaptive pressures in human evolution. Understanding relationships among water, plants, and early humans is limited both by incomplete terrestrial records of environmental change and by indirect proxy data for water availability. Here we present a continuous record of stable hydrogen-isotope compositions (expressed as δD values) for lipid biomarkers preserved in lake sediments from an early Pleistocene archaeological site in eastern Africa--Olduvai Gorge. We convert sedimentary leaf- and algal-lipid δD values into estimates for ancient source-water δD values by accounting for biochemical, physiological, and environmental influences on isotopic fractionation via published water-lipid enrichment factors for living plants, algae, and recent sediments. Reconstructed precipitation and lake-water δD values, respectively, are consistent with modern isotopic hydrology and reveal that dramatic fluctuations in water availability accompanied ecosystem changes. Drier conditions, indicated by less negative δD values, occur in association with stable carbon-isotopic evidence for open, C(4)-dominated grassland ecosystems. Wetter conditions, indicated by lower δD values, are associated with expanded woody cover across the ancient landscape. Estimates for ancient precipitation amounts, based on reconstructed precipitation δD values, range between approximately 250 and 700 mm · y(-1) and are consistent with modern precipitation data for eastern Africa. We conclude that freshwater availability exerted a substantial influence on eastern African ecosystems and, by extension, was central to early human proliferation during periods of rapid climate change.

  17. Origin and diversification of leucine-rich repeat receptor-like protein kinase (LRR-RLK) genes in plants.

    PubMed

    Liu, Ping-Li; Du, Liang; Huang, Yuan; Gao, Shu-Min; Yu, Meng

    2017-02-07

    Leucine-rich repeat receptor-like protein kinases (LRR-RLKs) are the largest group of receptor-like kinases in plants and play crucial roles in development and stress responses. The evolutionary relationships among LRR-RLK genes have been investigated in flowering plants; however, no comprehensive studies have been performed for these genes in more ancestral groups. The subfamily classification of LRR-RLK genes in plants, the evolutionary history and driving force for the evolution of each LRR-RLK subfamily remain to be understood. We identified 119 LRR-RLK genes in the Physcomitrella patens moss genome, 67 LRR-RLK genes in the Selaginella moellendorffii lycophyte genome, and no LRR-RLK genes in five green algae genomes. Furthermore, these LRR-RLK sequences, along with previously reported LRR-RLK sequences from Arabidopsis thaliana and Oryza sativa, were subjected to evolutionary analyses. Phylogenetic analyses revealed that plant LRR-RLKs belong to 19 subfamilies, eighteen of which were established in early land plants, and one of which evolved in flowering plants. More importantly, we found that the basic structures of LRR-RLK genes for most subfamilies are established in early land plants and conserved within subfamilies and across different plant lineages, but divergent among subfamilies. In addition, most members of the same subfamily had common protein motif compositions, whereas members of different subfamilies showed variations in protein motif compositions. The unique gene structure and protein motif compositions of each subfamily differentiate the subfamily classifications and, more importantly, provide evidence for functional divergence among LRR-RLK subfamilies. Maximum likelihood analyses showed that some sites within four subfamilies were under positive selection. Much of the diversity of plant LRR-RLK genes was established in early land plants. Positive selection contributed to the evolution of a few LRR-RLK subfamilies.

  18. High compatibility between arbuscular mycorrhizal fungal communities and seedlings of different land use types in a tropical dry ecosystem.

    PubMed

    Gavito, Mayra E; Pérez-Castillo, Daniel; González-Monterrubio, César F; Vieyra-Hernández, Teresa; Martínez-Trujillo, Miguel

    2008-12-01

    We conducted this study to explore limitations for the establishment of mycorrhizal associations in disturbed areas of the tropical dry ecosystem in the Chamela region of Jalisco, Mexico. Specifically, we: (1) assessed the diversity and composition of arbuscular mycorrhizal fungal (AMF) communities through spore morphospecies identification in three common land uses (primary forest, secondary forest, and pasture), (2) tested the inoculum potential of the AMF communities and the effect of water stress on the establishment of mycorrhizal associations in seedlings of various plant species, and (3) explored the importance of AMF community composition on early seedling development. Soil and root samples were taken from 15 random points in each of three plots established in two primary forests, two 26-year-old secondary forests, and two 26-year-old pastures. We expected that because of soil degradation and management, pastures would have the lowest and primary forests the highest AMF species richness. We found evidence for changes in AMF species composition due to land use and for higher morphospecies richness in primary forests than in secondary forests and pastures. We expected also that water stress limited plant and mycorrhizal development and that plants and AMF communities from secondary forests and pastures would be less affected by (better adapted to) water stress than those from the primary forest. We found that although all plant species showed biomass reductions under water stress, only some of the plant species had lower mycorrhizal development under water stress, and this was regardless of the AMF community inoculated. The third hypothesis was that plant species common to all land use types would respond similarly to all AMF communities, whereas plant species found mainly in one land use type would grow better when inoculated with the AMF community of that specific land use type. All plant species were however equally responsive to the three AMF communities

  19. Resistant tissues of modern marchantioid liverworts resemble enigmatic Early Paleozoic microfossils

    PubMed Central

    Graham, Linda E.; Wilcox, Lee W.; Cook, Martha E.; Gensel, Patricia G.

    2004-01-01

    Absence of a substantial pretracheophyte fossil record for bryophytes (otherwise predicted by molecular systematics) poses a major problem in our understanding of earliest land-plant structure. In contrast, there exist enigmatic Cambrian–Devonian microfossils (aggregations of tubes or sheets of cells or possibly a combination of both) controversially interpreted as an extinct group of early land plants known as nematophytes. We used an innovative approach to explore these issues: comparison of tube and cell-sheet microfossils with experimentally degraded modern liverworts as analogues of ancient early land plants. Lower epidermal surface tissues, including rhizoids, of Marchantia polymorpha and Conocephalum conicum were resistant to breakdown after rotting for extended periods or high-temperature acid treatment (acetolysis), suggesting fossilization potential. Cell-sheet and rhizoid remains occurred separately or together depending on the degree of body degradation. Rhizoid break-off at the lower epidermal surface left rimmed pores at the centers of cell rosettes; these were similar in structure, diameter, and distribution to pores characterizing nematophyte cell-sheet microfossils known as Cosmochlaina. The range of Marchantia rhizoid diameters overlapped that of Cosmochlaina pores. Approximately 14% of dry biomass of Marchantia vegetative thalli and 40% of gametangiophores was resistant to acetolysis. Pre- and posttreatment cell-wall autofluorescence suggested the presence of phenolic compounds that likely protect lower epidermal tissues from soil microbe attack and provide dimensional stability to gametangiophores. Our results suggest that at least some microfossils identified as nematophytes may be the remains of early marchantioid liverworts similar in some ways to modern Marchantia and Conocephalum. PMID:15263095

  20. Stomatal Blue Light Response Is Present in Early Vascular Plants.

    PubMed

    Doi, Michio; Kitagawa, Yuki; Shimazaki, Ken-ichiro

    2015-10-01

    Light is a major environmental factor required for stomatal opening. Blue light (BL) induces stomatal opening in higher plants as a signal under the photosynthetic active radiation. The stomatal BL response is not present in the fern species of Polypodiopsida. The acquisition of a stomatal BL response might provide competitive advantages in both the uptake of CO2 and prevention of water loss with the ability to rapidly open and close stomata. We surveyed the stomatal opening in response to strong red light (RL) and weak BL under the RL with gas exchange technique in a diverse selection of plant species from euphyllophytes, including spermatophytes and monilophytes, to lycophytes. We showed the presence of RL-induced stomatal opening in most of these species and found that the BL responses operated in all euphyllophytes except Polypodiopsida. We also confirmed that the stomatal opening in lycophytes, the early vascular plants, is driven by plasma membrane proton-translocating adenosine triphosphatase and K(+) accumulation in guard cells, which is the same mechanism operating in stomata of angiosperms. These results suggest that the early vascular plants respond to both RL and BL and actively regulate stomatal aperture. We also found three plant species that absolutely require BL for both stomatal opening and photosynthetic CO2 fixation, including a gymnosperm, C. revoluta, and the ferns Equisetum hyemale and Psilotum nudum. © 2015 American Society of Plant Biologists. All Rights Reserved.

  1. Genetic identification of female Cannabis sativa plants at early developmental stage.

    PubMed

    Techen, Natascha; Chandra, Suman; Lata, Hemant; Elsohly, Mahmoud A; Khan, Ikhlas A

    2010-11-01

    Sequence-characterized amplified region (SCAR) markers were used to identify female plants at an early developmental stage in four different varieties of Cannabis sativa. Using the cetyl trimethylammonium bromide (CTAB) method, DNA was isolated from two-week-old plants of three drug-type varieties (Terbag W1, Terbag K2, and Terbag MX) and one fiber-type variety (Terbag Fedora A7) of C. sativa grown under controlled environmental conditions through seeds. Attempts to use MADC2 (male-associated DNA from Cannabis sativa) primers as a marker to identify the sex of Cannabis sativa plants were successful. Amplification of genomic DNA using MADC2-F and MADC2-R primers produced two distinct fragments, one with a size of approximately 450 bp for female plants and one for male plants with a size of approximately 300 bp. After harvesting the tissues for DNA extraction, plants were subjected to a flowering photoperiod (i.e., 12-h light cycle), and the appearance of flowers was compared with the DNA analysis. The results of the molecular analysis were found to be concordant with the appearance of male or female flowers. The results of this study represent a quick and reliable technique for the identification of sex in Cannabis plants using SCAR markers at a very early developmental stage. © Georg Thieme Verlag KG Stuttgart · New York.

  2. Comparison of riparian plant communities under four land management systems in southwestern Wisconsin

    USGS Publications Warehouse

    Paine, L.K.; Ribic, C.A.

    2002-01-01

    Riparian plant community composition is influenced by moisture, erosion, original native plant communities, and current and past land use. This study compared riparian plant communities under four types of management: woody buffer strip, grassy buffer strip, rotational grazing, and continuous grazing. Study sites were located along spring-fed streams in the unglaciated region of southwestern Wisconsin, USA. At each site, plant community surveys were conducted using a point transect method. Among the treatments, woody buffer strips, rotationally grazed and continuously grazed riparian areas had greater plant species richness than grassy buffer strips, and woody buffer strips had the greatest native plant species richness. Reed canary grass (Phalaris arundinacea L.) was prevalent in grassy buffer strips (44% of all observations), common in woody buffer strips (15%), and rare in sites that were rotationally or continuously grazed (3 and 5%, respectively). Pasture sites had greater proportions of native grasses and grass relatives and moderate levels of overall native species richness. Considered a water quality best management practice, well-managed rotational grazing may be a reasonable alternative to buffer strips which can contribute to protection and enhancement of native vegetation biodiversity. ?? 2002 Elsevier Science B.V. All rights reserved.

  3. Hyperspectral remote sensing for advanced detection of early blight (Alternaria solani) disease in potato (Solanum tuberosum) plants

    NASA Astrophysics Data System (ADS)

    Atherton, Daniel

    Early detection of disease and insect infestation within crops and precise application of pesticides can help reduce potential production losses, reduce environmental risk, and reduce the cost of farming. The goal of this study was the advanced detection of early blight (Alternaria solani) in potato (Solanum tuberosum) plants using hyperspectral remote sensing data captured with a handheld spectroradiometer. Hyperspectral reflectance spectra were captured 10 times over five weeks from plants grown to the vegetative and tuber bulking growth stages. The spectra were analyzed using principal component analysis (PCA), spectral change (ratio) analysis, partial least squares (PLS), cluster analysis, and vegetative indices. PCA successfully distinguished more heavily diseased plants from healthy and minimally diseased plants using two principal components. Spectral change (ratio) analysis provided wavelengths (490-510, 640, 665-670, 690, 740-750, and 935 nm) most sensitive to early blight infection followed by ANOVA results indicating a highly significant difference (p < 0.0001) between disease rating group means. In the majority of the experiments, comparisons of diseased plants with healthy plants using Fisher's LSD revealed more heavily diseased plants were significantly different from healthy plants. PLS analysis demonstrated the feasibility of detecting early blight infected plants, finding four optimal factors for raw spectra with the predictor variation explained ranging from 93.4% to 94.6% and the response variation explained ranging from 42.7% to 64.7%. Cluster analysis successfully distinguished healthy plants from all diseased plants except for the most mildly diseased plants, showing clustering analysis was an effective method for detection of early blight. Analysis of the reflectance spectra using the simple ratio (SR) and the normalized difference vegetative index (NDVI) was effective at differentiating all diseased plants from healthy plants, except for the

  4. RSL Class I Genes Controlled the Development of Epidermal Structures in the Common Ancestor of Land Plants.

    PubMed

    Proust, Hélène; Honkanen, Suvi; Jones, Victor A S; Morieri, Giulia; Prescott, Helen; Kelly, Steve; Ishizaki, Kimitsune; Kohchi, Takayuki; Dolan, Liam

    2016-01-11

    The colonization of the land by plants, sometime before 470 million years ago, was accompanied by the evolution tissue systems [1-3]. Specialized structures with diverse functions-from nutrient acquisition to reproduction-derived from single cells in the outermost layer (epidermis) were important sources of morphological innovation at this time [2, 4, 5]. In extant plants, these structures may be unicellular extensions, such as root hairs or rhizoids [6-9], or multicellular structures, such as asexual propagules or secretory hairs (papillae) [10-12]. Here, we show that a ROOTHAIR DEFECTIVE SIX-LIKE (RSL) class I basic helix-loop-helix transcription factor positively regulates the development of the unicellular and multicellular structures that develop from individual cells that expand out of the epidermal plane of the liverwort Marchantia polymorpha; mutants that lack MpRSL1 function do not develop rhizoids, slime papillae, mucilage papillae, or gemmae. Furthermore, we discovered that RSL class I genes are also required for the development of multicellular axillary hairs on the gametophyte of the moss Physcomitrella patens. Because class I RSL proteins also control the development of rhizoids in mosses and root hairs in angiosperms [13, 14], these data demonstrate that the function of RSL class I genes was to control the development of structures derived from single epidermal cells in the common ancestor of the land plants. Class I RSL genes therefore controlled the generation of adaptive morphological diversity as plants colonized the land from the water. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  5. RSL Class I Genes Controlled the Development of Epidermal Structures in the Common Ancestor of Land Plants

    PubMed Central

    Proust, Hélène; Honkanen, Suvi; Jones, Victor A.S.; Morieri, Giulia; Prescott, Helen; Kelly, Steve; Ishizaki, Kimitsune; Kohchi, Takayuki; Dolan, Liam

    2016-01-01

    Summary The colonization of the land by plants, sometime before 470 million years ago, was accompanied by the evolution tissue systems [1, 2, 3]. Specialized structures with diverse functions—from nutrient acquisition to reproduction—derived from single cells in the outermost layer (epidermis) were important sources of morphological innovation at this time [2, 4, 5]. In extant plants, these structures may be unicellular extensions, such as root hairs or rhizoids [6, 7, 8, 9], or multicellular structures, such as asexual propagules or secretory hairs (papillae) [10, 11, 12]. Here, we show that a ROOTHAIR DEFECTIVE SIX-LIKE (RSL) class I basic helix-loop-helix transcription factor positively regulates the development of the unicellular and multicellular structures that develop from individual cells that expand out of the epidermal plane of the liverwort Marchantia polymorpha; mutants that lack MpRSL1 function do not develop rhizoids, slime papillae, mucilage papillae, or gemmae. Furthermore, we discovered that RSL class I genes are also required for the development of multicellular axillary hairs on the gametophyte of the moss Physcomitrella patens. Because class I RSL proteins also control the development of rhizoids in mosses and root hairs in angiosperms [13, 14], these data demonstrate that the function of RSL class I genes was to control the development of structures derived from single epidermal cells in the common ancestor of the land plants. Class I RSL genes therefore controlled the generation of adaptive morphological diversity as plants colonized the land from the water. PMID:26725198

  6. Supplemental planting of early successional tree species during bottomland hardwood afforestation

    USGS Publications Warehouse

    Twedt, D.J.; Wilson, R.R.; Outcalt, Kenneth W.

    2002-01-01

    Reforestation of former bottom land hardwood forests that have been cleared for agriculture (i.e., afforestation) has historically emphasized planting heavy-seeded oaks (Quercus spp.) and pecans (Carya spp.). These species are slow to develop vertical forest structure. However, vertical forest structure is key to colonization of afforested sites by forest birds. Although early-successional tree species often enhance vertical structure, few of these species invade afforested sites that are distant from seed sources. Furthermore, many land mangers are reluctant to establish and maintain stands of fast-growing plantation trees. Therefore, on 40 afforested bottomland sites, we supplemented heavy-seeded seedlings with 8 patches of fast-growing trees: 4 patches of 12 eastern cottonwood (Populus deltoides) stem cuttings and 4 patches of 12 American sycamore (Platanus occidentalis) seedlings. To enhance survival and growth, tree patches were subjected to 4 weed control treatments: (1) physical weed barriers, (2) chemical herbicide, (3) both physical and chemical weed control, or (4) no weed control. Overall, first-year survival of cottonwood and sycamore was 25 percent and 47 percent, respectively. Second-year survival of extant trees was 52 percent for cottonwood and 77 percent for sycamore. Physical weed barriers increased survival of cottonwoods to 30 percent versus 18 percent survival with no weed control. Similarly, sycamore survival was increased from 49 percent without weed control to 64 percent with physical weed barriers. Chemical weed control adversely impacted sycamore and reduced survival to 35 percent. Tree heights did not differ between species or among weed control treatments. Girdling of trees by deer often destroyed saplings. Thus, little increase in vertical structure was detected between growing seasons. Application of fertilizer and protection via tree shelters did not improve survival or vertical development of sycamore or cottonwood.

  7. Early Successional Microhabitats Allow the Persistence of Endangered Plants in Coastal Sand Dunes

    PubMed Central

    2015-01-01

    Many species are adapted to disturbance and occur within dynamic, mosaic landscapes that contain early and late successional microhabitats. Human modification of disturbance regimes alters the availability of microhabitats and may affect the viability of species in these ecosystems. Because restoring historical disturbance regimes is typically expensive and requires action at large spatial scales, such restoration projects must be justified by linking the persistence of species with successional microhabitats. Coastal sand dune ecosystems worldwide are characterized by their endemic biodiversity and frequent disturbance. Dune-stabilizing invasive plants alter successional dynamics and may threaten species in these ecosystems. We examined the distribution and population dynamics of two federally endangered plant species, the annual Layia carnosa and the perennial Lupinus tidestromii, within a dune ecosystem in northern California, USA. We parameterized a matrix population model for L. tidestromii and examined the magnitude by which the successional stage of the habitat (early or late) influenced population dynamics. Both species had higher frequencies and L. tidestromii had higher frequency of seedlings in early successional habitats. Lupinus tidestromii plants in early successional microhabitats had higher projected rates of population growth than those associated with stabilized, late successional habitats, due primarily to higher rates of recruitment in early successional microhabitats. These results support the idea that restoration of disturbance is critical in historically dynamic landscapes. Our results suggest that large-scale restorations are necessary to allow persistence of the endemic plant species that characterize these ecosystems. PMID:25835390

  8. Application of Satellite Data for Early Season Assessment of Fallowed Agricultural Lands for Drought Impact Reporting

    NASA Astrophysics Data System (ADS)

    Rosevelt, C.; Melton, F. S.; Johnson, L.; Verdin, J. P.; Thenkabail, P. S.; mueller, R.; Zakzeski, A.; Jones, J.

    2013-12-01

    Rapid assessment of drought impacts can aid water managers in assessing mitigation options, and guide decision making with respect to requests for local water transfers, county drought disaster designations, or state emergency proclamations. Satellite remote sensing offers an efficient way to provide quantitative assessments of drought impacts on agricultural production and land fallowing associated with reductions in water supply. A key advantage of satellite-based assessments is that they can provide a measure of land fallowing that is consistent across both space and time. Here we describe an approach for monthly mapping of land fallowing developed as part of a joint effort by USGS, USDA, and NASA to provide timely assessments of land fallowing during drought events. This effort has used the Central Valley of California as a pilot region for development and testing of an operational approach. To provide quantitative measures of fallowed land from satellite data early in the season, we developed a decision tree algorithm and applied it to timeseries of normalized difference vegetation index (NDVI) data from Landsat TM, ETM+, and MODIS. Our effort has been focused on development of leading indicators of drought impacts in the March - June timeframe based on measures of crop development patterns relative to a reference period with average or above average rainfall. This capability complements ongoing work by USDA to produce and publicly release within-season estimates of fallowed acreage from the USDA Cropland Data Layer. To assess the accuracy of the algorithms, monthly ground validation surveys were conducted along transects across the Central Valley at more than 200 fields per month from March - June, 2013. Here we present the algorithm for mapping fallowed acreage early in the season along with results from the accuracy assessment, and discuss potential applications to other regions.

  9. Agriculture: Land Use

    EPA Pesticide Factsheets

    Land Use and agriculture. Information about land use restrictions and incentive programs.Agricultural operations sometimes involve activities regulated by laws designed to protect water supplies, threatened or endangered plants and animals, or wetlands.

  10. Growth Predictions for Tree Species Planted on Marginal Soybean Lands in the Lower Mississippi Valley

    Treesearch

    J.W. Groninger; W.M. Aust; M. Miwa; John A. Stanturf

    2000-01-01

    The establishment of bottomland hardwood forest stands and riparian buffers on frequently-flooded soybean (Glycine max.) lands in the Lower Mississippi Valley represents a tremendous opporunity to prvide both economic and environmental benefits to the region. Selecting appropriate sites for reestablishing tree cover, accurately predicting the productivity of planted...

  11. Land uses, fire, and invasion: Exotic annual Bromus and human dimensions [Chapter 11

    Treesearch

    David A. Pyke; Jeanne C. Chambers; Jeffrey L. Beck; Matthew L. Brooks; Brian A. Mealor

    2016-01-01

    Human land uses are the primary cause of the introduction and spread of exotic annual Bromus species. Initial introductions were likely linked to contaminated seeds used by homesteading farmers in the late 1880s and early 1900s. Transportation routes aided their spread. Unrestricted livestock grazing from the 1800s through the mid-1900s reduced native plant competitors...

  12. Sequencing of small RNAs of the fern Pleopeltis minima (Polypodiaceae) offers insight into the evolution of the microrna repertoire in land plants

    PubMed Central

    Berruezo, Florencia; de Souza, Flávio S. J.; Picca, Pablo I.; Nemirovsky, Sergio I.; Martínez Tosar, Leandro; Rivero, Mercedes; Mentaberry, Alejandro N.

    2017-01-01

    MicroRNAs (miRNAs) are short, single stranded RNA molecules that regulate the stability and translation of messenger RNAs in diverse eukaryotic groups. Several miRNA genes are of ancient origin and have been maintained in the genomes of animal and plant taxa for hundreds of millions of years, playing key roles in development and physiology. In the last decade, genome and small RNA (sRNA) sequencing of several plant species have helped unveil the evolutionary history of land plants. Among these, the fern group (monilophytes) occupies a key phylogenetic position, as it represents the closest extant cousin taxon of seed plants, i.e. gymno- and angiosperms. However, in spite of their evolutionary, economic and ecological importance, no fern genome has been sequenced yet and few genomic resources are available for this group. Here, we sequenced the small RNA fraction of an epiphytic South American fern, Pleopeltis minima (Polypodiaceae), and compared it to plant miRNA databases, allowing for the identification of miRNA families that are shared by all land plants, shared by all vascular plants (tracheophytes) or shared by euphyllophytes (ferns and seed plants) only. Using the recently described transcriptome of another fern, Lygodium japonicum, we also estimated the degree of conservation of fern miRNA targets in relation to other plant groups. Our results pinpoint the origin of several miRNA families in the land plant evolutionary tree with more precision and are a resource for future genomic and functional studies of fern miRNAs. PMID:28494025

  13. Sequencing of small RNAs of the fern Pleopeltis minima (Polypodiaceae) offers insight into the evolution of the microrna repertoire in land plants.

    PubMed

    Berruezo, Florencia; de Souza, Flávio S J; Picca, Pablo I; Nemirovsky, Sergio I; Martínez Tosar, Leandro; Rivero, Mercedes; Mentaberry, Alejandro N; Zelada, Alicia M

    2017-01-01

    MicroRNAs (miRNAs) are short, single stranded RNA molecules that regulate the stability and translation of messenger RNAs in diverse eukaryotic groups. Several miRNA genes are of ancient origin and have been maintained in the genomes of animal and plant taxa for hundreds of millions of years, playing key roles in development and physiology. In the last decade, genome and small RNA (sRNA) sequencing of several plant species have helped unveil the evolutionary history of land plants. Among these, the fern group (monilophytes) occupies a key phylogenetic position, as it represents the closest extant cousin taxon of seed plants, i.e. gymno- and angiosperms. However, in spite of their evolutionary, economic and ecological importance, no fern genome has been sequenced yet and few genomic resources are available for this group. Here, we sequenced the small RNA fraction of an epiphytic South American fern, Pleopeltis minima (Polypodiaceae), and compared it to plant miRNA databases, allowing for the identification of miRNA families that are shared by all land plants, shared by all vascular plants (tracheophytes) or shared by euphyllophytes (ferns and seed plants) only. Using the recently described transcriptome of another fern, Lygodium japonicum, we also estimated the degree of conservation of fern miRNA targets in relation to other plant groups. Our results pinpoint the origin of several miRNA families in the land plant evolutionary tree with more precision and are a resource for future genomic and functional studies of fern miRNAs.

  14. Antagonistic Roles for KNOX1 and KNOX2 Genes in Patterning the Land Plant Body Plan Following an Ancient Gene Duplication

    PubMed Central

    Furumizu, Chihiro; Alvarez, John Paul; Sakakibara, Keiko; Bowman, John L.

    2015-01-01

    Neofunctionalization following gene duplication is thought to be one of the key drivers in generating evolutionary novelty. A gene duplication in a common ancestor of land plants produced two classes of KNOTTED-like TALE homeobox genes, class I (KNOX1) and class II (KNOX2). KNOX1 genes are linked to tissue proliferation and maintenance of meristematic potentials of flowering plant and moss sporophytes, and modulation of KNOX1 activity is implicated in contributing to leaf shape diversity of flowering plants. While KNOX2 function has been shown to repress the gametophytic (haploid) developmental program during moss sporophyte (diploid) development, little is known about KNOX2 function in flowering plants, hindering syntheses regarding the relationship between two classes of KNOX genes in the context of land plant evolution. Arabidopsis plants harboring loss-of-function KNOX2 alleles exhibit impaired differentiation of all aerial organs and have highly complex leaves, phenocopying gain-of-function KNOX1 alleles. Conversely, gain-of-function KNOX2 alleles in conjunction with a presumptive heterodimeric BELL TALE homeobox partner suppressed SAM activity in Arabidopsis and reduced leaf complexity in the Arabidopsis relative Cardamine hirsuta, reminiscent of loss-of-function KNOX1 alleles. Little evidence was found indicative of epistasis or mutual repression between KNOX1 and KNOX2 genes. KNOX proteins heterodimerize with BELL TALE homeobox proteins to form functional complexes, and contrary to earlier reports based on in vitro and heterologous expression, we find high selectivity between KNOX and BELL partners in vivo. Thus, KNOX2 genes confer opposing activities rather than redundant roles with KNOX1 genes, and together they act to direct the development of all above-ground organs of the Arabidopsis sporophyte. We infer that following the KNOX1/KNOX2 gene duplication in an ancestor of land plants, neofunctionalization led to evolution of antagonistic biochemical

  15. The influence of gravity and wind on land plant evolution.

    PubMed

    Niklas, K J

    1998-07-01

    Aspects of the engineering theory treating the elastic stability of vertical stems and cantilevered leaves supporting their own weight and additional wind-induced forces (drag) are reviewed in light of biomechanical studies of living and fossil terrestrial plant species. The maximum height to which arborescent species can grow before their stems elastically buckle under their own weight is estimated by means of the Euler-Greenhill formula which states that the critical buckling height scales as the 1/3 power of plant tissue-stiffness normalized with respect to tissue bulk density and as the 2/3 power of stem diameter. Data drawn from living plants indicate that progressively taller plant species employ stiffer and lighter-weight plant tissues as the principal stiffening agent in their vertical stems. The elastic stability of plants subjected to high lateral wind-loadings is governed by the drag torque (the product of the drag force and the height above ground at which this force is applied), which cannot exceed the gravitational bending moment (the product of the weight of aerial organs and the lever arm measured at the base of the plant). Data from living plants indicate that the largest arborescent plant species rely on massive trunks and broad, horizontally expansive root crowns to resist drag torques. The drag on the canopies of these plants is also reduced by highly flexible stems and leaves composed of tissues that twist and bend more easily than tissues used to stiffen older, more proximal stems. A brief review of the fossil record suggests that modifications in stem, leaf, and root morphology and anatomy capable of simultaneously coping with self-weight and wind-induced drag forces evolved by Devonian times, suggesting that natural selection acting on the elastic stability of sporophytes occurred early in the history of terrestrial plants.

  16. Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants

    PubMed Central

    Pires, Nuno; Dolan, Liam

    2010-01-01

    Basic helix-loop-helix (bHLH) proteins are a class of transcription factors found throughout eukaryotic organisms. Classification of the complete sets of bHLH proteins in the sequenced genomes of Arabidopsis thaliana and Oryza sativa (rice) has defined the diversity of these proteins among flowering plants. However, the evolutionary relationships of different plant bHLH groups and the diversity of bHLH proteins in more ancestral groups of plants are currently unknown. In this study, we use whole-genome sequences from nine species of land plants and algae to define the relationships between these proteins in plants. We show that few (less than 5) bHLH proteins are encoded in the genomes of chlorophytes and red algae. In contrast, many bHLH proteins (100–170) are encoded in the genomes of land plants (embryophytes). Phylogenetic analyses suggest that plant bHLH proteins are monophyletic and constitute 26 subfamilies. Twenty of these subfamilies existed in the common ancestors of extant mosses and vascular plants, whereas six further subfamilies evolved among the vascular plants. In addition to the conserved bHLH domains, most subfamilies are characterized by the presence of highly conserved short amino acid motifs. We conclude that much of the diversity of plant bHLH proteins was established in early land plants, over 440 million years ago. PMID:19942615

  17. Evolutionary genomics of LysM genes in land plants.

    PubMed

    Zhang, Xue-Cheng; Cannon, Steven B; Stacey, Gary

    2009-08-03

    The ubiquitous LysM motif recognizes peptidoglycan, chitooligosaccharides (chitin) and, presumably, other structurally-related oligosaccharides. LysM-containing proteins were first shown to be involved in bacterial cell wall degradation and, more recently, were implicated in perceiving chitin (one of the established pathogen-associated molecular patterns) and lipo-chitin (nodulation factors) in flowering plants. However, the majority of LysM genes in plants remain functionally uncharacterized and the evolutionary history of complex LysM genes remains elusive. We show that LysM-containing proteins display a wide range of complex domain architectures. However, only a simple core architecture is conserved across kingdoms. Each individual kingdom appears to have evolved a distinct array of domain architectures. We show that early plant lineages acquired four characteristic architectures and progressively lost several primitive architectures. We report plant LysM phylogenies and associated gene, protein and genomic features, and infer the relative timing of duplications of LYK genes. We report a domain architecture catalogue of LysM proteins across all kingdoms. The unique pattern of LysM protein domain architectures indicates the presence of distinctive evolutionary paths in individual kingdoms. We describe a comparative and evolutionary genomics study of LysM genes in plant kingdom. One of the two groups of tandemly arrayed plant LYK genes likely resulted from an ancient genome duplication followed by local genomic rearrangement, while the origin of the other groups of tandemly arrayed LYK genes remains obscure. Given the fact that no animal LysM motif-containing genes have been functionally characterized, this study provides clues to functional characterization of plant LysM genes and is also informative with regard to evolutionary and functional studies of animal LysM genes.

  18. Mechanisms of the early phases of plant gravitropism

    NASA Technical Reports Server (NTRS)

    Kiss, J. Z.

    2000-01-01

    Gravitropism is directed growth of a plant or plant organ in response to gravity and can be divided into the following temporal sequence: perception, transduction, and response. This article is a review of the research on the early events of gravitropism (i.e., phenomena associated with the perception and transduction phases). The two major hypotheses for graviperception are the protoplast-pressure and starch-statolith models. While most researchers support the concept of statoliths, there are suggestions that plants have multiple mechanisms of perception. Evidence supports the hypothesis that the actin cytoskeleton is involved in graviperception/transduction, but the details of these mechanisms remain elusive. A number of recent developments, such as increased use of the molecular genetic approach, magnetophoresis, and laser ablation, have facilitated research in graviperception and have allowed for refinement of the current models. In addition, the entire continuum of acceleration forces from hypo- to hyper-gravity have been useful in studying perception mechanisms. Future interdisciplinary molecular approaches and the availability of sophisticated laboratories on the International Space Station should help to develop new insights into mechanisms of gravitropism in plants.

  19. The Potential Role of Arbuscular Mycorrhizal Fungi in the Restoration of Degraded Lands

    PubMed Central

    Asmelash, Fisseha; Bekele, Tamrat; Birhane, Emiru

    2016-01-01

    Experiences worldwide reveal that degraded lands restoration projects achieve little success or fail. Hence, understanding the underlying causes and accordingly, devising appropriate restoration mechanisms is crucial. In doing so, the ever-increasing aspiration and global commitments in degraded lands restoration could be realized. Here we explain that arbuscular mycorrhizal fungi (AMF) biotechnology is a potential mechanism to significantly improve the restoration success of degraded lands. There are abundant scientific evidences to demonstrate that AMF significantly improve soil attributes, increase above and belowground biodiversity, significantly improve tree/shrub seedlings survival, growth and establishment on moisture and nutrient stressed soils. AMF have also been shown to drive plant succession and may prevent invasion by alien species. The very few conditions where infective AMF are low in abundance and diversity is when the soil erodes, is disturbed and is devoid of vegetation cover. These are all common features of degraded lands. Meanwhile, degraded lands harbor low levels of infective AMF abundance and diversity. Therefore, the successful restoration of infective AMF can potentially improve the restoration success of degraded lands. Better AMF inoculation effects result when inocula are composed of native fungi instead of exotics, early seral instead of late seral fungi, and are consortia instead of few or single species. Future research efforts should focus on AMF effect on plant community primary productivity and plant competition. Further investigation focusing on forest ecosystems, and carried out at the field condition is highly recommended. Devising cheap and ethically widely accepted inocula production methods and better ways of AMF in situ management for effective restoration of degraded lands will also remain to be important research areas. PMID:27507960

  20. Evolution of the bHLH Genes Involved in Stomatal Development: Implications for the Expansion of Developmental Complexity of Stomata in Land Plants

    PubMed Central

    Ran, Jin-Hua; Shen, Ting-Ting; Liu, Wen-Juan; Wang, Xiao-Quan

    2013-01-01

    Stomata play significant roles in plant evolution. A trio of closely related basic Helix-Loop-Helix (bHLH) subgroup Ia genes, SPCH, MUTE and FAMA, mediate sequential steps of stomatal development, and their functions may be conserved in land plants. However, the evolutionary history of the putative SPCH/MUTE/FAMA genes is still greatly controversial, especially the phylogenetic positions of the bHLH Ia members from basal land plants. To better understand the evolutionary pattern and functional diversity of the bHLH genes involved in stomatal development, we made a comprehensive evolutionary analysis of the homologous genes from 54 species representing the major lineages of green plants. The phylogenetic analysis indicated: (1) All bHLH Ia genes from the two basal land plants Physcomitrella and Selaginella were closely related to the FAMA genes of seed plants; and (2) the gymnosperm ‘SPCH’ genes were sister to a clade comprising the angiosperm SPCH and MUTE genes, while the FAMA genes of gymnosperms and angiosperms had a sister relationship. The revealed phylogenetic relationships are also supported by the distribution of gene structures and previous functional studies. Therefore, we deduce that the function of FAMA might be ancestral in the bHLH Ia subgroup. In addition, the gymnosperm “SPCH” genes may represent an ancestral state and have a dual function of SPCH and MUTE, two genes that could have originated from a duplication event in the common ancestor of angiosperms. Moreover, in angiosperms, SPCHs have experienced more duplications and harbor more copies than MUTEs and FAMAs, which, together with variation of the stomatal development in the entry division, implies that SPCH might have contributed greatly to the diversity of stomatal development. Based on the above, we proposed a model for the correlation between the evolution of stomatal development and the genes involved in this developmental process in land plants. PMID:24244399

  1. Response of Late Carboniferous and Early Permian Plant Communities to Climate Change

    NASA Astrophysics Data System (ADS)

    Dimichele, William A.; Pfefferkorn, Hermann W.; Gastaldo, Robert A.

    Late Carboniferous and Early Permian strata record the transition from a cold interval in Earth history, characterized by the repeated periods of glaciation and deglaciation of the southern pole, to a warm-climate interval. Consequently, this time period is the best available analogue to the Recent in which to study patterns of vegetational response, both to glacial-interglacial oscillation and to the appearance of warm climate. Carboniferous wetland ecosystems were dominated by spore-producing plants and early gymnospermous seed plants. Global climate changes, largely drying, forced vegetational changes, resulting in a change to a seed plant-dominated world, beginning first at high latitudes during the Carboniferous, reaching the tropics near the Permo-Carboniferous boundary. For most of this time plant assemblages were very conservative in their composition. Change in the dominant vegetation was generally a rapid process, which suggests that environmental thresholds were crossed, and involved little mixing of elements from the wet and dry floras.

  2. Estimation of Wheat Plant Density at Early Stages Using High Resolution Imagery

    PubMed Central

    Liu, Shouyang; Baret, Fred; Andrieu, Bruno; Burger, Philippe; Hemmerlé, Matthieu

    2017-01-01

    Crop density is a key agronomical trait used to manage wheat crops and estimate yield. Visual counting of plants in the field is currently the most common method used. However, it is tedious and time consuming. The main objective of this work is to develop a machine vision based method to automate the density survey of wheat at early stages. RGB images taken with a high resolution RGB camera are classified to identify the green pixels corresponding to the plants. Crop rows are extracted and the connected components (objects) are identified. A neural network is then trained to estimate the number of plants in the objects using the object features. The method was evaluated over three experiments showing contrasted conditions with sowing densities ranging from 100 to 600 seeds⋅m-2. Results demonstrate that the density is accurately estimated with an average relative error of 12%. The pipeline developed here provides an efficient and accurate estimate of wheat plant density at early stages. PMID:28559901

  3. Target or barrier? The cell wall of early- and later-diverging plants vs cadmium toxicity: differences in the response mechanisms

    PubMed Central

    Parrotta, Luigi; Guerriero, Gea; Sergeant, Kjell; Cai, Giampiero; Hausman, Jean-Francois

    2015-01-01

    Increasing industrialization and urbanization result in emission of pollutants in the environment including toxic heavy metals, as cadmium and lead. Among the different heavy metals contaminating the environment, cadmium raises great concern, as it is ecotoxic and as such can heavily impact ecosystems. The cell wall is the first structure of plant cells to come in contact with heavy metals. Its composition, characterized by proteins, polysaccharides and in some instances lignin and other phenolic compounds, confers the ability to bind non-covalently and/or covalently heavy metals via functional groups. A strong body of evidence in the literature has shown the role of the cell wall in heavy metal response: it sequesters heavy metals, but at the same time its synthesis and composition can be severely affected. The present review analyzes the dual property of plant cell walls, i.e., barrier and target of heavy metals, by taking Cd toxicity as example. Following a summary of the known physiological and biochemical responses of plants to Cd, the review compares the wall-related mechanisms in early- and later-diverging land plants, by considering the diversity in cell wall composition. By doing so, common as well as unique response mechanisms to metal/cadmium toxicity are identified among plant phyla and discussed. After discussing the role of hyperaccumulators’ cell walls as a particular case, the review concludes by considering important aspects for plant engineering. PMID:25814996

  4. [Soil and water losses and phosphorus output at the places between ridges in sloping peanut land under different planting modes in Yimeng mountainous area of Shandong Province, East China].

    PubMed

    Li, Jian-Hua; Yu, Xing-Xiu; Liu, Qian-Jin; Wu, Yuan-Zhi

    2012-12-01

    Taking the typical land use type, sloping Arachis hypogaea land, in Yimeng mountainous area of Shandong as study object, an in-situ fixed-point field experiment was conducted to study the characteristics of soil and water losses and phosphorus output at the places between ridges in the sloping land under different planting modes (Arachis hypogaea + Cynodon dactylon, I; A. hypogae + Melilotus officinalis, II; A. hypogaea + Lolium multiflorum, III; A. hypogaea + Trifolium repens, IV; A. hypogaea + blank control, V). Planting grasses at the places between ridges could effectively decrease the soil and water losses. The runoff was 55.1%-61.3% of the control, and decreased in the order of II > I > IV> III. The sediment loss was 3.4% -32.3% of the control, and decreased in the order of IV > II > I > 11. A. hypogaea + L. multiflorum was effective in storing water and retaining sediment. During the early period of planting L. multiflorum, the sediment loss was more affected by rainfall and presented a fluctuated variation, but in late period, the sediment loss decreased continuously and performed more stable, and accordingly, the sediment retention increased continuously. Planting grasses effectively decreased the output of phosphorus, with the decrease of total phosphorus (TP) output being 52.8%-75.3% of the control, and was in the order of I > II > IV > III. As compared with the control, planting grasses decreased 27.5% -67.0% of the output of particle phosphorus (PP), but relatively increased the output of dissolvable phosphorus (DP). A. hypogaea + L. multiflorum had the best effect in decreasing the output of phosphorus, with the outputs of TP and PP being 58.4% and 27.5% of the control, respectively. In the growth period of the vegetations, the losses of different phosphorus forms differed, and the dissolvable inorganic phosphorus was the main form of the output of DP during whole rain season. After the peanut harvested, the output of different phosphorus forms in the

  5. Preliminary Study of Late Pleistocene to Early Holocene Plant Food Strategies in China

    NASA Astrophysics Data System (ADS)

    Hayashi Tang, M.; Liu, X.; Fritz, G.; Zhao, Z.

    2017-12-01

    In recent decades, studies on the domestication and early cultivation of seed crops have contributed significantly to how we understand human-plant interactions, and their impact on human social organisation and the environment. It is becoming clear, however, that plants have been critical to the human diet for much longer and in more diverse ways than previously assumed. This paper is a preliminary attempt at identifying and addressing early prehistoric plant food strategies in China. In particular, very little is known about the use of vegetatively propagated plants, despite their significant representation in modern crops. Many ingredients of Chinese medicine are also roots and tubers (or vegetative storage organs, VSOs). Unlike seed crops, however, we lack a systematic criterion for examining diagnostic characters of different VSO taxa in the archaeological record. To address this issue, we characterized commonly consumed and historically significant VSOs in China, by studying experimentally charred modern samples under the optical microscope and scanning electron microscope. We then compared the characteristics of these modern VSO samples against plant remains from Late Pleistocene to early Holocene archaeological sites in China, such as Zengpiyan (Guangxi), Zhaoguodong (Guizhou), and Jiahu (Henan) sites. We found that different taxa of VSOs can be differentiated by using multiple lines of evidence, including: shape and size of various cells, texture and arrangement of cell walls, as well as anatomical arrangements of organs, especially the vascular bundles. Though identification can be difficult when fragile cell structures have collapsed or deteriorated, more robust features are often preserved for diagnosis. Our results suggest that the potential for studying the role of vegetatively propagated plants in early human-environmental interactions is overlooked, and can be expanded significantly with further investment in their systematic identification.

  6. Replacement of meat and dairy by plant-derived foods: estimated effects on land use, iron and SFA intakes in young Dutch adult females.

    PubMed

    Temme, Elisabeth H M; van der Voet, Hilko; Thissen, Jac T N M; Verkaik-Kloosterman, Janneke; van Donkersgoed, Gerda; Nonhebel, Sanderine

    2013-10-01

    Reduction in the current high levels of meat and dairy consumption may contribute to environmental as well as human health. Since meat is a major source of Fe, effects on Fe intake need to be evaluated, especially in groups vulnerable to negative Fe status. In the present study we evaluated the effects of replacing meat and dairy foods with plant-based products on environmental sustainability (land requirement) and health (SFA and Fe intakes) in women. Data on land requirements were derived from existing calculation methods. Food composition data were derived from the Dutch Food Composition Table 2006. Data were linked to the food consumption of young Dutch women. Land requirements and nutrient intakes were evaluated at baseline and in two scenarios in which 30% (Scenario_30%) or 100% (Scenario_100%) of the dairy and meat consumption was randomly replaced by the same amount of plant-based dairy- and meat-replacing foods. The Netherlands. Three hundred and ninety-eight young Dutch females. Replacement of meat and dairy by plant-based foods benefited the environment by decreasing land use. The intake of SFA decreased considerably compared with the baseline situation. On average, total Fe intake increased by 2.5 mg/d, although most of the Fe intake was from a less bioavailable source. Replacement of meat and dairy foods by plant-based foods reduced land use for consumption and SFA intake of young Dutch females and did not compromise total Fe intake.

  7. Hardwood planting

    Treesearch

    Richard M. Godman

    1992-01-01

    Hardwood planting used to be most common on private land. Now more and more hardwoods are being planted on public land. Not much hardwood planting research is going on but recent summaries of earlier trials allow us to give you the following guidelines.

  8. Early vs. asymptotic growth responses of herbaceous plants to elevated CO[sub 2

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Thomas, S.C.; Jasienski, M.; Bazzaz, F.A.

    1999-07-01

    Although many studies have examined the effects of elevated carbon dioxide on plant growth,'' the dynamics of growth involve at least two parameters, namely, an early rate of exponential size increase and an asymptotic size reached late in plant ontogeny. The common practice of quantifying CO[sub 2] responses as a single response ratio thus obscures two qualitatively distinct kinds of effects. The present experiment examines effects of elevated CO[sub 2] on both early and asymptotic growth parameters in eight C[sub 3] herbaceous plant species (Abutilon theophrasti, Cassia obtusifolia, Plantago major, Rumex crispus, Taraxacum officinale, Dactylis glomerata, Lolium multiflorum, and Panicummore » dichotomoflorum). Plants were grown for 118--172 d in a factorial design of CO[sub 2] (350 and 700 [micro]L/L) and plant density (individually grown vs. high-density monocultures) under edaphic conditions approximating those of coastal areas in Massachusetts. For Abutilon theophrasti, intraspecific patterns of plant response were also assessed using eight genotypes randomly sampled from a natural population and propagated as inbred lines.« less

  9. Why does land-use history facilitate non-native plant invasion? A field experiment with Celastrus orbiculatus in the southern Appalachians

    Treesearch

    Timothy R. Kuhman; Scott M. Pearson; Monica G. Turner

    2013-01-01

    Although historic land use is often implicated in non-native plant invasion of forests, little is known about how land-use legacies might actually facilitate invasion. We conducted a 2-year field seeding experiment in western North Carolina, USA, to compare germination and first-year seedling survival of Celastrus orbiculatus Thunb. in stands that...

  10. A review of public desert land lease policies for concentrated solar power plants and the impact on their economic performance

    NASA Astrophysics Data System (ADS)

    Smyrnakis, Christos; Phocas-Cosmetatos, Alex; Kynigalakis, Kostantinos

    2016-05-01

    Large scale Concentrated Solar Power (CSP) plants need large plots of land with very high solar resource and thus are often deployed in desert areas which are usually owned by the state or a municipal authority. This study discusses the implication and practices of land lease policies with regards to CSP development. The strategy followed on a land lease is examined by definition on a case-specific basis and this text is by no means exhaustive with regards to its content. The study also discusses the pricing of land in various cases, presents the governing types of land lease and their effect on the economic performance of hypothetical CSP projects under various cases.

  11. Optimization of planting pattern plan in Logung irrigation area using linear program

    NASA Astrophysics Data System (ADS)

    Wardoyo, Wasis; Setyono

    2018-03-01

    Logung irrigation area is located in Kudus Regency, Central Java Province, Indonesia. Irrigation area with 2810 Ha of extent is getting water supply from Logung dam. Yet, the utilization of water at Logung dam is not optimal and the distribution of water is still not evenly distributed. Therefore, this study will discuss about the optimization of irrigation water utilization based on the beginning of plant season. This optimization begins with the analysis of hydrology, climatology and river discharge in order to determine the irrigation water needs. After determining irrigation water needs, six alternatives of planting patterns with the different early planting periods, i.e. 1st November, 2nd November, 3rd November, 1st December, 2nd December, and 3rd December with the planting pattern of rice-secondary crop-sugarcane is introduced. It is continued by the analysis of water distribution conducted using linear program assisted by POM-Quantity method for Windows 3 with the reliable discharge limit and the available land area. Output of this calculation are to determine the land area that can be planted based on the type of plant and growing season, and to obtaine the profits of harvest yields. Based on the optimum area of each plant species with 6 alternatives, the most optimum area was obtained at the early planting periods on 3rd December with the production profit of Rp 113.397.338.854,- with the planting pattern of rice / beans / sugarcane-rice / beans / sugarcane-beans / sugarcane.

  12. Africa's wild C4 plant foods and possible early hominid diets.

    PubMed

    Peters, Charles R; Vogel, John C

    2005-03-01

    A small minority of Africa's wild plant foods are C4. These are primarily the seeds of some of the C4 grasses, the rootstocks and stem/leaf bases of some of the C4 sedges (especially papyrus), and the leaves of some of the C4 herbaceous dicots (forbs). These wild food plants are commonly found in disturbed ground and wetlands (particularly the grasses and sedges). Multiple lines of evidence indicate that C4 grasses were present in Africa by at least the late Miocene. It is a reasonable hypothesis that the prehistory of the C4 sedges parallels that of the C4 grasses, but the C4 forbs may not have become common until the late Pleistocene. CAM plants may have a more ancient history, but offer few opportunities for an additional C4-like dietary signal. The environmental reconstructions available for the early South African hominid sites do not indicate the presence of large wetlands, and therefore probably the absence of a strong potential for a C4 plant food diet. However, carbon isotope analyses of tooth enamel from three species of early South African hominids have shown that there was a significant but not dominant contribution of C4 biomass in their diets. Since it appears unlikely that this C4 component could have come predominantly from C4 plant foods, a broad range of potential animal contributors is briefly considered, namely invertebrates, reptiles, birds, and small mammals. It is concluded that the similar average C4 dietary intake seen in the three South African hominid species could have been acquired by differing contributions from the various sources, without the need to assume scavenging or hunting of medium to large grazing ungulates. Effectively similar dominantly dryland paleo-environments may also be part of the explanation. Theoretically, elsewhere in southern and eastern Africa, large wetlands would have offered early hominids greater opportunities for a C4 plant diet.

  13. Early Triassic wrinkle structures on land: stressed environments and oases for life

    NASA Astrophysics Data System (ADS)

    Chu, Daoliang; Tong, Jinnan; Song, Haijun; Benton, Michael J.; Bottjer, David J.; Song, Huyue; Tian, Li

    2015-06-01

    Wrinkle structures in rocks younger than the Permian-Triassic (P-Tr) extinction have been reported repeatedly in marine strata, but rarely mentioned in rocks recording land. Here, three newly studied terrestrial P-Tr boundary rock succession in North China have yielded diverse wrinkle structures. All of these wrinkles are preserved in barely bioturbated shore-shallow lacustrine siliciclastic deposits of the Liujiagou Formation. Conversely, both the lacustrine siliciclastic deposits of the underlying Sunjiagou Formation and the overlying Heshanggou Formation show rich bioturbation, but no wrinkle structures or other microbial-related structures. The occurrence of terrestrial wrinkle structures in the studied sections reflects abnormal hydrochemical and physical environments, presumably associated with the extinction of terrestrial organisms. Only very rare trace fossils occurred in the aftermath of the P-Tr extinction, but most of them were preserved together with the microbial mats. This suggests that microbial mats acted as potential oases for the surviving aquatic animals, as a source of food and oxygen. The new finds suggests that extreme environmental stresses were prevalent both in the sea and on land through most of the Early Triassic.

  14. Results from conceptual design study of potential early commercial MHD/steam power plants

    NASA Technical Reports Server (NTRS)

    Hals, F.; Kessler, R.; Swallom, D.; Westra, L.; Zar, J.; Morgan, W.; Bozzuto, C.

    1981-01-01

    This paper presents conceptual design information for a potential early MHD power plant developed in the second phase of a joint study of such plants. Conceptual designs of plant components and equipment with performance, operational characteristics and costs are reported on. Plant economics and overall performance including full and part load operation are reviewed. Environmental aspects and the methods incorporated in plant design for emission control of sulfur and nitrogen oxides are reviewed. Results from reliability/availability analysis conducted are also included.

  15. Terrigenous fluxes of pollen, insect scale and land plant palynodebris observed by sediment traps deployed in the subarctic Pacific

    NASA Astrophysics Data System (ADS)

    Tsutsui, H.; Takahashi, K.; Fowell, S. J.; Matsuoka, K.; Jordan, R. W.; Yamamoto, S.

    2014-12-01

    From 1990 to 2009, sediment traps in the subarctic Pacific (SA; 49°N, 174°W) were deployed and recovered during each summer, allowing the long-term observation of particle fluxes. As the Pacific Decadal Oscillation index changed in 1999 as air-temp cooled, this study focused on pollen, land plant debris and insect scale fluxes at SA during 1998 to 2006. The max pollen and fern spores flux was a mean of 74 grains m2 d-1, and the following details: 65% of the total pollen counts represented by wind-pollinated trees (e.g., alder, birch and pine), 24% by the herbaceous plants (as herbs), and 11% by fern spores. Spore, herbaceous and wind-pollinated tree pollen (as wind-pollen) fluxes peaked in May and Sep-Oct, but flux peaks of the latter also occurred in April and Jun. The annual flux peaks of insect scales (of unknown origin) and land-plant debris were in May and Sep, but over the entire study period the max insect scale flux of 161 was in Aug 2002, with a mean of 16 scales m2d-1, while the max (in Aug 2004) and mean land-plant debris fluxes were 107 and 10 plant fragments m2d-1, respectively. The sediment traps are situated both side of the Aleutian Is., where snow and ice occurs from Oct to May. The ice-snow season accounts for 25% of the total annual particle flux in SA trap, with 75% throughout the rest of the year. The correlation coefficient among pollen, insect scales and land plant debris are: 1) 0.58 (p<1%) between wind-pollen and insect scales, 2) 0.75 (p<5%) between herb-pollen and land plant debris, 3) but only 0.14 between insect scales and herbaceous pollen. Thus, the production location, residence time, route and mode of transport of the particles are important factors. Normally, the wind-pollinated tree flowering season in the northern part of Alaska and Japan where are an upper stream to the stations is from Apr to Jun, with the pollen usually transported across the ocean by winds. Assuming that the pollen takes several months to arrive SA, the

  16. Herbivory more limiting than competition on early and established native plants in an invaded meadow.

    PubMed

    Gonzales, Emily K; Arcese, Peter

    2008-12-01

    The dominance of nonnative plants coupled with declines of native plants suggests that competitive displacement drives extinctions, yet empirical examples are rare. Herbivores, however, can alter vegetation structure and reduce diversity when abundant. Herbivores may act on mature, reproductive life stages whereas some of the strongest competitive effects might occur at early life stages that are difficult to observe. For example, competition by perennial nonnative grasses can interfere with the establishment of native seeds. We contrasted the effects of ungulate herbivory and competition by neighboring plants on the performance of native plant species at early and established life stages in invaded oak meadows. We recorded growth, survival, and flowering in two native species transplanted as established plants, six native species grown from seed, and five extant lily species as part of two 2 x 2 factorial experiments that manipulated herbivory and competition. Herbivory reduced the performance of nearly all focal native species at early and established life stages, whereas competition had few measurable effects. Our results suggest that herbivory has a greater local influence on native plant species than competition and that reducing herbivore impacts will be required to successfully restore endangered oak meadows where ungulates are now abundant.

  17. Checklist of Major Plant Species in Ashley County, Arkansas Noted by General Land Office Surveyors

    Treesearch

    Don C. Bragg

    2002-01-01

    The original General Land Office (GLO) survey notes for the Ashley County, Arkansas, area were examined to determine the plant taxa mentioned during the 1818 to 1855 surveys. While some challenges in identifying species were encountered, at least 39 families and approximately 100 species were identified with reasonable certainty. Most references were for trees used to...

  18. Plant foods and the dietary ecology of Neanderthals and early modern humans.

    PubMed

    Henry, Amanda G; Brooks, Alison S; Piperno, Dolores R

    2014-04-01

    One of the most important challenges in anthropology is understanding the disappearance of Neanderthals. Previous research suggests that Neanderthals had a narrower diet than early modern humans, in part because they lacked various social and technological advances that lead to greater dietary variety, such as a sexual division of labor and the use of complex projectile weapons. The wider diet of early modern humans would have provided more calories and nutrients, increasing fertility, decreasing mortality and supporting large population sizes, allowing them to out-compete Neanderthals. However, this model for Neanderthal dietary behavior is based on analysis of animal remains, stable isotopes, and other methods that provide evidence only of animal food in the diet. This model does not take into account the potential role of plant food. Here we present results from the first broad comparison of plant foods in the diets of Neanderthals and early modern humans from several populations in Europe, the Near East, and Africa. Our data comes from the analysis of plant microremains (starch grains and phytoliths) in dental calculus and on stone tools. Our results suggest that both species consumed a similarly wide array of plant foods, including foods that are often considered low-ranked, like underground storage organs and grass seeds. Plants were consumed across the entire range of individuals and sites we examined, and none of the expected predictors of variation (species, geographic region, or associated stone tool technology) had a strong influence on the number of plant species consumed. Our data suggest that Neanderthal dietary ecology was more complex than previously thought. This implies that the relationship between Neanderthal technology, social behavior, and food acquisition strategies must be better explored. Copyright © 2014 Elsevier Ltd. All rights reserved.

  19. Paleoclimate from fossil plants and application to the early Cenozoic Rocky Mountains

    NASA Astrophysics Data System (ADS)

    Wing, S. L.

    2011-12-01

    Wladimir Köppen called vegetation "crystallized, visible climate," and his metaphor encouraged paleobotanists to climb the chain of inference from fossil plants to paleovegetation to paleoclimate. Inferring paleovegetation from fossils has turned out to be very difficult, however, and today most paleobotanical methods for inferring paleoclimate do not try to reconstruct paleovegetation as a first step. Three major approaches are widely use to infer paleoclimate from plant fossils: 1) phylogenetic inferences rely on the climatic distributions of extant relatives of fossils, 2) morphological inferences use present-day correlations of climate with plant morphology (e.g, leaf shape, wood anatomy), and 3) chemical inferences rely on correlations between climate and the stable isotopic composition of plants or organic compounds. Each approach makes assumptions that are hard to verify. Phylogenetic inference depends on accurate identification of fossils, and also assumes that evolution and/or extinction has not shifted the climatic distributions of plant lineages through time. On average this assumption is less valid for older time periods, but probably it is not radically wrong for the early Cenozoic. Morphological approaches don't require taxonomic identification of plant fossils, but do assume that correlations between plant form and climate have been constant over time. This assumption is bolstered if the ecophysiological cause of the morphology-climate correlation is well understood, but often it isn't. Stable isotopic approaches assume that present-day correlations between isotopic composition and climate apply to the past. Commonly the chemical and physiological mechanisms responsible for the correlation are moderately well known, but often the variation among different taxonomic and functional groups of plants is poorly characterized. In spite of limitations and uncertainties on all methods for inferring paleoclimate from fossil plants, broad patterns emerge from

  20. Evaluating the influence of plant-specific physiological parameterizations on the partitioning of land surface energy fluxes

    NASA Astrophysics Data System (ADS)

    Sulis, Mauro; Langensiepen, Matthias; Shrestha, Prabhakar; Schickling, Anke; Simmer, Clemens; Kollet, Stefan

    2015-04-01

    Vegetation has a significant influence on the partitioning of radiative forcing, the spatial and temporal variability of soil water and soil temperature. Therefore plant physiological properties play a key role in mediating and amplifying interactions and feedback mechanisms in the soil-vegetation-atmosphere continuum. Because of the direct impact on latent heat fluxes, these properties may also influence weather generating processes, such as the evolution of the atmospheric boundary layer (ABL). In land surface models, plant physiological properties are usually obtained from literature synthesis by unifying several plant/crop species in predefined vegetation classes. In this work, crop-specific physiological characteristics, retrieved from detailed field measurements, are included in the bio-physical parameterization of the Community Land Model (CLM), which is a component of the Terrestrial Systems Modeling Platform (TerrSysMP). The measured set of parameters for two typical European mid-latitudinal crops (sugar beet and winter wheat) is validated using eddy covariance measurements (sensible heat and latent heat) over multiple years from three measurement sites located in the North Rhine-Westphalia region, Germany. We found clear improvements of CLM simulations, when using the crop-specific physiological characteristics of the plants instead of the generic crop type when compared to the measurements. In particular, the increase of latent heat fluxes in conjunction with decreased sensible heat fluxes as simulated by the two new crop-specific parameter sets leads to an improved quantification of the diurnal energy partitioning. These findings are cross-validated using estimates of gross primary production extracted from net ecosystem exchange measurements. This independent analysis reveals that the better agreement between observed and simulated latent heat using the plant-specific physiological properties largely stems from an improved simulation of the

  1. The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants

    PubMed Central

    Turmel, Monique; Otis, Christian; Lemieux, Claude

    2002-01-01

    The land plants and their immediate green algal ancestors, the charophytes, form the Streptophyta. There is evidence that both the chloroplast DNA (cpDNA) and mitochondrial DNA (mtDNA) underwent substantial changes in their architecture (intron insertions, gene losses, scrambling in gene order, and genome expansion in the case of mtDNA) during the evolution of streptophytes; however, because no charophyte organelle DNAs have been sequenced completely thus far, the suite of events that shaped streptophyte organelle genomes remains largely unknown. Here, we have determined the complete cpDNA (131,183 bp) and mtDNA (56,574 bp) sequences of the charophyte Chaetosphaeridium globosum (Coleochaetales). At the levels of gene content (124 genes), intron composition (18 introns), and gene order, Chaetosphaeridium cpDNA is remarkably similar to land-plant cpDNAs, implying that most of the features characteristic of land-plant lineages were gained during the evolution of charophytes. Although the gene content of Chaetosphaeridium mtDNA (67 genes) closely resembles that of the bryophyte Marchantia polymorpha (69 genes), this charophyte mtDNA differs substantially from its land-plant relatives at the levels of size, intron composition (11 introns), and gene order. Our finding that it shares only one intron with its land-plant counterparts supports the idea that the vast majority of mitochondrial introns in land plants appeared after the emergence of these organisms. Our results also suggest that the events accounting for the spacious intergenic spacers found in land-plant mtDNAs took place late during the evolution of charophytes or coincided with the transition from charophytes to land plants. PMID:12161560

  2. CERES–Maize Model for Determining the Optimum Planting Dates of Early Maturing Maize Varieties in Northern Nigeria

    PubMed Central

    Adnan, Adnan A.; Jibrin, Jibrin M.; Kamara, Alpha Y.; Abdulrahman, Bassam L.; Shaibu, Abdulwahab S.; Garba, Ismail I.

    2017-01-01

    Field trials were carried out in the Sudan Savannah of Nigeria to assess the usefulness of CERES–maize crop model as a decision support tool for optimizing maize production through manipulation of plant dates. The calibration experiments comprised of 20 maize varieties planted during the dry and rainy seasons of 2014 and 2015 at Bayero University Kano and Audu Bako College of Agriculture Dambatta. The trials for model evaluation were conducted in 16 different farmer fields across the Sudan (Bunkure and Garun—Mallam) and Northern Guinea (Tudun-Wada and Lere) Savannas using two of the calibrated varieties under four different sowing dates. The model accurately predicted grain yield, harvest index, and biomass of both varieties with low RMSE-values (below 5% of mean), high d-index (above 0.8), and high r-square (above 0.9) for the calibration trials. The time series data (tops weight, stem and leaf dry weights) were also predicted with high accuracy (% RMSEn above 70%, d-index above 0.88). Similar results were also observed for the evaluation trials, where all variables were simulated with high accuracies. Estimation efficiencies (EF)-values above 0.8 were observed for all the evaluation parameters. Seasonal and sensitivity analyses on Typic Plinthiustalfs and Plinthic Kanhaplustults in the Sudan and Northern Guinea Savannas were conducted. Results showed that planting extra early maize varieties in late July and early maize in mid-June leads to production of highest grain yields in the Sudan Savanna. In the Northern Guinea Savanna planting extra-early maize in mid-July and early maize in late July produced the highest grain yields. Delaying planting in both Agro-ecologies until mid-August leads to lower yields. Delaying planting to mid-August led to grain yield reduction of 39.2% for extra early maize and 74.4% for early maize in the Sudan Savanna. In the Northern Guinea Savanna however, delaying planting to mid-August resulted in yield reduction of 66.9 and 94

  3. Central cell-derived peptides regulate early embryo patterning in flowering plants.

    PubMed

    Costa, Liliana M; Marshall, Eleanor; Tesfaye, Mesfin; Silverstein, Kevin A T; Mori, Masashi; Umetsu, Yoshitaka; Otterbach, Sophie L; Papareddy, Ranjith; Dickinson, Hugh G; Boutiller, Kim; VandenBosch, Kathryn A; Ohki, Shinya; Gutierrez-Marcos, José F

    2014-04-11

    Plant embryogenesis initiates with the establishment of an apical-basal axis; however, the molecular mechanisms accompanying this early event remain unclear. Here, we show that a small cysteine-rich peptide family is required for formation of the zygotic basal cell lineage and proembryo patterning in Arabidopsis. EMBRYO SURROUNDING FACTOR 1 (ESF1) peptides accumulate before fertilization in central cell gametes and thereafter in embryo-surrounding endosperm cells. Biochemical and structural analyses revealed cleavage of ESF1 propeptides to form biologically active mature peptides. Further, these peptides act in a non-cell-autonomous manner and synergistically with the receptor-like kinase SHORT SUSPENSOR to promote suspensor elongation through the YODA mitogen-activated protein kinase pathway. Our findings demonstrate that the second female gamete and its sexually derived endosperm regulate early embryonic patterning in flowering plants.

  4. Land use imperils plant and animal community stability through changes in asynchrony rather than diversity

    PubMed Central

    Blüthgen, Nico; Simons, Nadja K.; Jung, Kirsten; Prati, Daniel; Renner, Swen C.; Boch, Steffen; Fischer, Markus; Hölzel, Norbert; Klaus, Valentin H.; Kleinebecker, Till; Tschapka, Marco; Weisser, Wolfgang W.; Gossner, Martin M.

    2016-01-01

    Human land use may detrimentally affect biodiversity, yet long-term stability of species communities is vital for maintaining ecosystem functioning. Community stability can be achieved by higher species diversity (portfolio effect), higher asynchrony across species (insurance hypothesis) and higher abundance of populations. However, the relative importance of these stabilizing pathways and whether they interact with land use in real-world ecosystems is unknown. We monitored inter-annual fluctuations of 2,671 plant, arthropod, bird and bat species in 300 sites from three regions. Arthropods show 2.0-fold and birds 3.7-fold higher community fluctuations in grasslands than in forests, suggesting a negative impact of forest conversion. Land-use intensity in forests has a negative net impact on stability of bats and in grasslands on birds. Our findings demonstrate that asynchrony across species—much more than species diversity alone—is the main driver of variation in stability across sites and requires more attention in sustainable management. PMID:26869180

  5. Land use imperils plant and animal community stability through changes in asynchrony rather than diversity.

    PubMed

    Blüthgen, Nico; Simons, Nadja K; Jung, Kirsten; Prati, Daniel; Renner, Swen C; Boch, Steffen; Fischer, Markus; Hölzel, Norbert; Klaus, Valentin H; Kleinebecker, Till; Tschapka, Marco; Weisser, Wolfgang W; Gossner, Martin M

    2016-02-12

    Human land use may detrimentally affect biodiversity, yet long-term stability of species communities is vital for maintaining ecosystem functioning. Community stability can be achieved by higher species diversity (portfolio effect), higher asynchrony across species (insurance hypothesis) and higher abundance of populations. However, the relative importance of these stabilizing pathways and whether they interact with land use in real-world ecosystems is unknown. We monitored inter-annual fluctuations of 2,671 plant, arthropod, bird and bat species in 300 sites from three regions. Arthropods show 2.0-fold and birds 3.7-fold higher community fluctuations in grasslands than in forests, suggesting a negative impact of forest conversion. Land-use intensity in forests has a negative net impact on stability of bats and in grasslands on birds. Our findings demonstrate that asynchrony across species--much more than species diversity alone--is the main driver of variation in stability across sites and requires more attention in sustainable management.

  6. Plasma Membrane Cyclic Nucleotide Gated Calcium Channels Control Land Plant Thermal Sensing and Acquired Thermotolerance[C][W

    PubMed Central

    Finka, Andrija; Cuendet, America Farinia Henriquez; Maathuis, Frans J.M.; Saidi, Younousse; Goloubinoff, Pierre

    2012-01-01

    Typically at dawn on a hot summer day, land plants need precise molecular thermometers to sense harmless increments in the ambient temperature to induce a timely heat shock response (HSR) and accumulate protective heat shock proteins in anticipation of harmful temperatures at mid-day. Here, we found that the cyclic nucleotide gated calcium channel (CNGC) CNGCb gene from Physcomitrella patens and its Arabidopsis thaliana ortholog CNGC2, encode a component of cyclic nucleotide gated Ca2+ channels that act as the primary thermosensors of land plant cells. Disruption of CNGCb or CNGC2 produced a hyper-thermosensitive phenotype, giving rise to an HSR and acquired thermotolerance at significantly milder heat-priming treatments than in wild-type plants. In an aequorin-expressing moss, CNGCb loss-of-function caused a hyper-thermoresponsive Ca2+ influx and altered Ca2+ signaling. Patch clamp recordings on moss protoplasts showed the presence of three distinct thermoresponsive Ca2+ channels in wild-type cells. Deletion of CNGCb led to a total absence of one and increased the open probability of the remaining two thermoresponsive Ca2+ channels. Thus, CNGC2 and CNGCb are expected to form heteromeric Ca2+ channels with other related CNGCs. These channels in the plasma membrane respond to increments in the ambient temperature by triggering an optimal HSR, leading to the onset of plant acquired thermotolerance. PMID:22904147

  7. Industrial planting of E. viminalis in Mendocino County

    Treesearch

    Peter C. Passof; John W. Sweeley

    1983-01-01

    The authors trace the development of a Eucalyptus reforestation program on private industrial forest land from early testing to production planting. Data is presented on a 14.2 hectare manna gum plantation which has produced an estimated yield of 481 cubic meters/ hectare after 20 years. Because manna gum has about 60 percent greater density than Douglas-fir or redwood...

  8. Rehabilitation of lands mined for limestone in the Indian desert

    USGS Publications Warehouse

    Sharma, K.D.; Kumar, S.; Gough, L.P.

    2000-01-01

    In the Indian desert, the economics of mining is second only to agriculture in importance. However, research on the rehabilitation of land disturbed by mining has only recently received serious attention. An attempt has been made to determine both the qualitative and quantitative success of rehabilitation plans used to revegetate limestone mine spoils in an area near Barna, northwest arid India. Rehabilitation success was achieved using a combination of rainwater harvesting techniques, soil amendment application approaches, plant establishment methods and the selection of appropriate germplasm material (trees, shrubs and grasses). It is expected that the resulting vegetative cover will be capable of self-perpetuation under natural conditions while at the same time meeting the land-use needs of the local people. The minespoils have adequate levels of the major nutrients (except P, Mo and Se) for proper plant and grazing animal health. Levels of organic matter are low whereas total B concentrations are exceptionally high. Also, the population of soil fungi, Azotobactor, and nitrifying bacteria is negligible. Enhanced plant growth was achieved in treated plots, compared to control plots, where spoil moisture storage was improved by 5-45 per cent. Due to the decomposition of farmyard manure and nitrogen fixation by planted leguminous plant species, the electrical conductance of treated mine spoils increased threefold, CaCO3 content decreased from 20??0 to 5??2 per cent, and organic carbon, P, K, and biological activity increased significantly. The rehabilitation protocol used at the site appears to have been successful because plant self-regeneration is occurring. The increased diversity of woody perennials resulted in 'dominance' being better shared among species and 'evenness' being increased within the plant community elements. The early to mid-successional trends are continuing for six years following initial rehabilitation. This study developed methods for the

  9. CeLAND: search for a 4th light neutrino state with a 3 PBq 144Ce- 144Pr electron antineutrino generator in KamLAND

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gando, A; Gando, Y; Hayashida, S

    The reactor neutrino and gallium anomalies can be tested with a 3-4 PBq (75-100 kCi scale) 144Ce- 144Pr antineutrino beta-source deployed at the center or next to a large low-background liquid scintillator detector. The antineutrino generator will be produced by the Russian reprocessing plant PA Mayak as early as 2014, transported to Japan, and deployed in the Kamioka Liquid Scintillator Anti-Neutrino Detector (KamLAND) as early as 2015. KamLAND's 13 m diameter target volume provides a suitable environment to measure the energy and position dependence of the detected neutrino flux. A characteristic oscillation pattern would be visible for a baseline of about 10 m or less, providing a very clean signal of neutrino disappearance into a yet-unknown, sterile neutrino state. This will provide a comprehensive test of the electron dissaperance neutrino anomalies and could lead to the discovery of a 4th neutrino state for Δmmore » $$2\\atop{new}$$ ≳ 0.1 eV 2 and sin 2(2θ new) > 0.05.« less

  10. Vulnerability of oak-dominated forests in West Virginia to invasive exotic plants: temporal and spatial patterns of nine exotic species using herbarium records and land classification data

    Treesearch

    Cynthia D. Huebner

    2003-01-01

    Are oak-dominated forests immune to invasive exotic plants? Herbarium and land classification data were used to evaluate the extent of spread of nine invasive exotic plants and to relate their distributions to remotely-sensed land use types in West Virginia. Collector-defined habitats indicated that the most common habitat was roadsides, but seven of the nine species...

  11. Multiple mechanisms of early plant community assembly with stochasticity driving the process.

    PubMed

    Marteinsdóttir, Bryndís; Svavarsdóttir, Kristín; Thórhallsdóttir, Thóra Ellen

    2018-01-01

    Initial plant establishment is one of the most critical phases in ecosystem development, where an early suite of physical (environmental filtering), biological (seed limitation, species interactions) and stochastic factors may affect successional trajectories and rates. While functional traits are commonly used to study processes that influence plant community assembly in late successional communities, few studies have applied them to primary succession. The objective here was to determine the importance of these factors in shaping early plant community assembly on a glacial outwash plain, Skeiðarársandur, in SE Iceland using a trait based approach. We used data on vascular plant assemblages at two different spatial scales (community and neighborhood) sampled in 2005 and 2012, and compiled a dataset on seven functional traits linked to species dispersal abilities, establishment, and persistence for all species within these assemblages. Trait-based null model analyses were used to determine the processes that influenced plant community assembly from the regional species pool into local communities, and to determine if the importance of these processes in community assembly was dependent on local environment or changed with time. On the community scale, for most traits, random processes dominated the assembly from the regional species pool. However, in some communities, there was evidence of non-random assembly in relation to traits linked to species dispersal abilities, persistence, and establishment. On the neighborhood scale, assembly was mostly random. The relative importance of different processes varied spatially and temporally and the variation was linked to local soil conditions. While stochasticity dominated assembly patterns of our early successional communities, there was evidence of both seed limitation and environmental filtering. Our results indicated that as soil conditions improved, environmental constraints on assembly became weaker and the

  12. Does Climate Care about Land?

    NASA Astrophysics Data System (ADS)

    Dawson, E.; Lague, M. M.; Swann, A. L. S.

    2017-12-01

    Everyone knows that plants are influenced by the climate they live in. However, the reverse is also true: plants can influence climate both locally and globally by changing atmospheric circulation. Uncovering the role that plants play in climate has been challenging—the interactions are complex and vary greatly in different regions of the world. We lack a systematic understanding of the role of vegetation in the climate system. Using a new simplified land model coupled to a modern Earth System Model (ESM), we are able to separate the individual influences of the land system in the context of modern ESMs. For example, with our model we are able to test how the capacity of the land to hold water influences the atmosphere. If less water is able to evaporate, this could lead to substantial warming, and could even influence clouds. Understanding specifically where and how the atmosphere is influenced by the land surface improves our understanding of how future changes in the land surface will in turn feedback on climate, and how that will impact people. This improved understanding also advances our knowledge of the key role biology plays in driving the global climate system.

  13. Phthalate esters contamination in soil and plants on agricultural land near an electronic waste recycling site.

    PubMed

    Ma, Ting Ting; Christie, Peter; Luo, Yong Ming; Teng, Ying

    2013-08-01

    The accumulation of phthalic acid esters (PAEs) in soil and plants in agricultural land near an electronic waste recycling site in east China has become a great threat to the neighboring environmental quality and human health. Soil and plant samples collected from land under different utilization, including fallow plots, vegetable plots, plots with alfalfa (Medicago sativa L.) as green manure, fallow plots under long-term flooding and fallow plots under alternating wet and dry periods, together with plant samples from relative plots were analyzed for six PAE compounds nominated as prior pollutants by USEPA. In the determined samples, the concentrations of six target PAE pollutants ranged from 0.31-2.39 mg/kg in soil to 1.81-5.77 mg/kg in various plants (dry weight/DW), and their bioconcentration factors (BCFs) ranged from 5.8 to 17.9. Health risk assessments were conducted on target PAEs, known as typical environmental estrogen analogs, based on their accumulation in the edible parts of vegetables. Preliminary risk assessment to human health from soil and daily vegetable intake indicated that DEHP may present a high-exposure risk on all ages of the population in the area by soil ingestion or vegetable consumption. The potential damage that the target PAE compounds may pose to human health should be taken into account in further comprehensive risk assessments in e-waste recycling sites areas. Moreover, alfalfa removed substantial amounts of PAEs from the soil, and its use can be considered a good strategy for in situ remediation of PAEs.

  14. Suggested Planting Guidelines - Best Management Practices for Revegetation of Actively Used Training Lands in the Northeastern United States

    DTIC Science & Technology

    2012-09-01

    Indiana Crane Naval Warfare Center Jefferson Proving Ground Camp Atterbury 62,473 1,033 33,484 ERDC/CRREL TR-12-10 4 State and Facility Land...2012). They include seeding wildflowers and forbs as well as planting woody materials. Equipment used in the planting process is not included in...on invasive weeds by state can be found at http://www.fs.fed.us/rm/boise/research/ shrub /links.shtml ERDC/CRREL TR-12-10 18 3 Selecting the Seed

  15. LANDSAT-4 Science Characterization Early Results. Volume 4: Applications. [agriculture, soils land use, geology, hydrology, wetlands, water quality, biomass identification, and snow mapping

    NASA Technical Reports Server (NTRS)

    Barker, J. L. (Editor)

    1985-01-01

    The excellent quality of TM data allows researchers to proceed directly with applications analyses, without spending a significant amount of time applying various corrections to the data. The early results derived of TM data are discussed for the following applications: agriculture, land cover/land use, soils, geology, hydrology, wetlands biomass, water quality, and snow.

  16. Inflorescence photosynthetic contribution to fitness releases Arabidopsis thaliana plants from trade-off constraints on early flowering.

    PubMed

    Gnan, Sebastian; Marsh, Tom; Kover, Paula X

    2017-01-01

    Leaves are thought to be the primary carbon source for reproduction in plants, so a positive relationship between vegetative size and reproductive output is expected, establishing a trade-off between time to reproduction and reproductive output. A common response to higher temperatures due to climate changes is the induction of earlier transition into reproduction. Thus, in annual plants, earlier transition into flowering can potentially constrain plant size and reduce seed production. However, trade-offs between early reproduction and fitness are not always observed, suggesting mechanisms to escape the constraints of early flowering do exist. Here, we test whether inflorescence photosynthesis contribution to the reproductive output of Arabidopsis thaliana can offset the cost of early reproduction. We followed the development, growth rate and fitness of 15 accessions, and removed all rosette leaves at flowering (prior to the completion of inflorescence development or any fruit production) in half of the plants to determine the ability of inflorescences to maintain fitness in the absence of leaves. Although leaf removal significantly reduced fruit number, seed weight and plant height, even the most severely impacted accessions maintained 35% of their fitness with the inflorescence as the sole photosynthetic organ; and some accessions experienced no reduction in fitness. Differences between accessions in their ability to maintain fitness after leaf removal is best explained by earlier flowering time and the ability to maintain as many or more branches after leaf removal as in the control treatment. Although earlier flowering does constrain plant vegetative size, we found that inflorescence photosynthesis can significantly contribute to seed production, explaining why early flowering plants can maintain high fitness despite a reduction in vegetative size. Thus, plants can be released from the usually assumed trade-offs associated with earlier reproduction, and

  17. Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.

    PubMed

    Tam, Thomas Ho Yuen; Catarino, Bruno; Dolan, Liam

    2015-07-21

    Land plants develop filamentous cells-root hairs, rhizoids, and caulonemata-at the interface with the soil. Members of the group XI basic helix-loop-helix (bHLH) transcription factors encoded by LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) genes positively regulate the development of root hairs in the angiosperms Lotus japonicus, Arabidopsis thaliana, and rice (Oryza sativa). Here we show that auxin promotes rhizoid and caulonema development by positively regulating the expression of PpLRL1 and PpLRL2, the two LRL genes in the Physcomitrella patens genome. Although the group VIII bHLH proteins, AtROOT HAIR DEFECTIVE6 and AtROOT HAIR DEFECTIVE SIX-LIKE1, promote root-hair development by positively regulating the expression of AtLRL3 in A. thaliana, LRL genes promote rhizoid development independently of PpROOT HAIR DEFECTIVE SIX-LIKE1 and PpROOT HAIR DEFECITVE SIX-LIKE2 (PpRSL1 and PpRSL2) gene function in P. patens. Together, these data demonstrate that both LRL and RSL genes are components of an ancient auxin-regulated gene network that controls the development of tip-growing cells with rooting functions among most extant land plants. Although this network has diverged in the moss and the angiosperm lineages, our data demonstrate that the core network acted in the last common ancestor of the mosses and angiosperms that existed sometime before 420 million years ago.

  18. Characterization of Phytochrome Interacting Factors from the Moss Physcomitrella patens Illustrates Conservation of Phytochrome Signaling Modules in Land Plants

    PubMed Central

    Xu, Tengfei; Paik, Inyup; Hanke, Sebastian; Keim, Sarah; Hermann, Helen-Maria; Wolf, Luise; Becker, Claude

    2017-01-01

    Across the plant kingdom, phytochrome (PHY) photoreceptors play an important role during adaptive and developmental responses to light. In Arabidopsis thaliana, light-activated PHYs accumulate in the nucleus, where they regulate downstream signaling components, such as phytochrome interacting factors (PIFs). PIFs are transcription factors that act as repressors of photomorphogenesis; their inhibition by PHYs leads to substantial changes in gene expression. The nuclear function of PHYs, however, has so far been investigated in only a few non-seed plants. Here, we identified putative target genes of PHY signaling in the moss Physcomitrella patens and found light-regulated genes that are putative orthologs of PIF-controlled genes in Arabidopsis. Phylogenetic analyses revealed that an ancestral PIF-like gene was already present in streptophyte algae, i.e., before the water-to-land transition of plants. The PIF homologs in the genome of P. patens resemble Arabidopsis PIFs in their protein domain structure, molecular properties, and physiological effects, albeit with notable differences in the motif-dependent PHY interaction. Our results suggest that P. patens PIFs are involved in PHY signaling. The PHY-PIF signaling node that relays light signals to target genes has been largely conserved during land plant evolution, with evidence of lineage-specific diversification. PMID:28123107

  19. Land-Energy Nexus: Life Cycle Land Use of Natural Gas-Fired Electricity

    NASA Astrophysics Data System (ADS)

    Heath, G.; Jordaan, S.; Macknick, J.; Mohammadi, E.; Ben-Horin, D.; Urrea, V.

    2014-12-01

    Comparisons of the land required for different types of energy are challenging due to the fact that upstream land use of fossil fuel technologies is not well characterized. This research focuses on improving estimates of the life cycle land use of natural gas-fired electricity through the novel combination of inventories of the location of natural gas-related infrastructure, satellite imagery analysis and gas production data. Land area per unit generation is calculated as the sum of natural gas life cycle stages divided by the throughput of natural gas, combined with the land use of the power plant divided by the generation of the power plant. Five natural gas life cycle stages are evaluated for their area: production, gathering, processing, transmission and disposal. The power plant stage is characterized by a thermal efficiency ηth, which converts MegaJoules (MJ) to kilowatt hours (kWh). We focus on seven counties in the Barnett shale region in Texas that represent over 90% of total Barnett Shale gas production. In addition to assessing the gathering and transmission pipeline network, approximately 500 sites are evaluated from the five life cycle stages plus power plants. For instance, assuming a 50 foot right-of-way for transmission pipelines, this part of the Barnett pipeline network occupies nearly 26,000 acres. Site, road and water components to total area are categorized. Methods are developed to scale up sampled results for each component type to the full population of sites within the Barnett. Uncertainty and variability are charaterized. Well-level production data are examined by integrating commercial datasets with advanced methods for quantifying estimated ultimate recovery (EUR) for wells, then summed to estimate natural gas produced in an entire play. Wells that are spatially coincident are merged using ArcGIS. All other sites are normalized by an estimate of gas throughput. Prior land use estimates are used to validate the satellite imagery analysis

  20. Copper, zinc and lead biogeochemistry in aquatic and land plants from the Iberian Pyrite Belt (Portugal) and north of Morocco mining areas.

    PubMed

    Durães, Nuno; Bobos, Iuliu; Ferreira da Silva, Eduardo; Dekayir, Abdelilah

    2015-02-01

    The ability of aquatic (Juncus effusus L., Scirpus holoschoenus L., Thypha latifolia L. and Juncus sp.) and land (Cistus ladanifer L., Erica andevalensis C.-R., Nerium oleander L., Isatis tinctoria L., Rosmarinus officinalis L., Cynodon dactylon L. and Hordeum murinum L.) plants from Portugal (Aljustrel, Lousal and São Domingos) and Morocco (Tighza and Zeida) mining areas to uptake, translocate and tolerate heavy metals (Cu, Zn and Pb) was evaluated. The soils (rhizosphere) of the first mining area are characterized by high acidity conditions (pH 2-5), whereas from the second area, by alkaline conditions (pH 7.0-8.5). Physicochemical parameters and mineralogy of the rhizosphere were determined from both areas. Chemical analysis of plants and the rhizosphere was carried out by inductively coupled plasma emission spectrometry. The sequential chemical extraction procedure was applied for rhizosphere samples collected from both mining areas. In the acid conditions, the aquatic plants show a high capacity for Zn bioaccumulation and translocation and less for Pb, reflecting the following metal mobility sequence: Zn > Cu > Pb. Kaolinite detected in the roots by infrared spectroscopy (IR) contributed to metal fixation (i.e. Cu), reducing its translocation to the aerial parts. Lead identified in the roots of land plants (e.g. E. andevalensis) was probably adsorbed by C-H functional groups identified by IR, being easily translocated to the aerial parts. It was found that aquatic plants are more efficient for phytostabilization than bioaccumulation. Lead is more bioavailable in the rhizosphere from Morocco mining areas due to scarcity of minerals with high adsorption ability, being absorbed and translocated by both aquatic and land plants.

  1. Peculiar Evolutionary History of miR390-Guided TAS3-Like Genes in Land Plants

    PubMed Central

    Krasnikova, Maria S.; Goryunov, Denis V.; Troitsky, Alexey V.; Solovyev, Andrey G.; Ozerova, Lydmila V.; Morozov, Sergey Y.

    2013-01-01

    PCR-based approach was used as a phylogenetic profiling tool to probe genomic DNA samples from representatives of evolutionary distant moss taxa, namely, classes Bryopsida, Tetraphidopsida, Polytrichopsida, Andreaeopsida, and Sphagnopsida. We found relatives of all Physcomitrella patens miR390 and TAS3-like loci in these plant taxa excluding Sphagnopsida. Importantly, cloning and sequencing of Marchantia polymorpha genomic DNA showed miR390 and TAS3-like sequences which were also found among genomic reads of M. polymorpha at NCBI database. Our data suggest that the ancient plant miR390-dependent TAS molecular machinery firstly evolved to target AP2-like mRNAs in Marchantiophyta and only then both ARF- and AP2-specific mRNAs in mosses. The presented analysis shows that moss TAS3 families may undergone losses of tasiAP2 sites during evolution toward ferns and seed plants. These data confirm that miR390-guided genes coding for ARF- and AP2-specific ta-siRNAs have been gradually changed during land plant evolution. PMID:24302881

  2. Germination and early plant development of ten plant species exposed to titanium dioxide and cerium oxide nanoparticles

    EPA Science Inventory

    Ten agronomic plant species were exposed to different concentrations of nano titanium dioxide (nTiO2) or nano cerium oxide (nCeO2) (0, 250, 500 and 1000 mg/L) to examine potential effects on germination and early seedling development. We modified a standard test protocol develop...

  3. Sulphur limitation and early sulphur deficiency responses in poplar: significance of gene expression, metabolites, and plant hormones.

    PubMed

    Honsel, Anne; Kojima, Mikiko; Haas, Richard; Frank, Wolfgang; Sakakibara, Hitoshi; Herschbach, Cornelia; Rennenberg, Heinz

    2012-03-01

    The influence of sulphur (S) depletion on the expression of genes related to S metabolism, and on metabolite and plant hormone contents was analysed in young and mature leaves, fine roots, xylem sap, and phloem exudates of poplar (Populus tremula×Populus alba) with special focus on early consequences. S depletion was applied by a gradual decrease of sulphate availability. The observed changes were correlated with sulphate contents. Based on the decrease in sulphate contents, two phases of S depletion could be distinguished that were denominated as 'S limitation' and 'early S deficiency'. S limitation was characterized by improved sulphate uptake (enhanced root-specific sulphate transporter PtaSULTR1;2 expression) and reduction capacities (enhanced adenosine 5'-phosphosulphate (APS) reductase expression) and by enhanced remobilization of sulphate from the vacuole (enhanced putative vacuolar sulphate transporter PtaSULTR4;2 expression). During early S deficiency, whole plant distribution of S was impacted, as indicated by increasing expression of the phloem-localized sulphate transporter PtaSULTR1;1 and by decreasing glutathione contents in fine roots, young leaves, mature leaves, and phloem exudates. Furthermore, at 'early S deficiency', expression of microRNA395 (miR395), which targets transcripts of PtaATPS3/4 (ATP sulphurylase) for cleavage, increased. Changes in plant hormone contents were observed at 'early S deficiency' only. Thus, S depletion affects S and plant hormone metabolism of poplar during 'S limitation' and 'early S deficiency' in a time series of events. Despite these consequences, the impact of S depletion on growth of poplar plants appears to be less severe than in Brassicaceae such as Arabidopsis thaliana or Brassica sp.

  4. Gas exchange by the mesic-origin, arid land plantation species Robinia pseudoacacia under annual summer reduction in plant hydraulic conductance.

    PubMed

    Miyazawa, Yoshiyuki; Du, Sheng; Taniguchi, Takeshi; Yamanaka, Norikazu; Kumagai, Tomo'omi

    2018-03-28

    The mesic-origin plantation species Robinia pseudoacacia L. has been successfully grown in many arid land plantations around the world but often exhibits dieback and reduced growth due to drought. Therefore, to explore the behavior of this species under changing environmental conditions, we examined the relationship between ecophysiological traits, gas exchange and plant hydraulics over a 3-year period in trees that experienced reduced plant hydraulic conductance (Gp) in summer. We found that the transpiration rate, stomatal conductance (Gs) and minimum leaf water potential (Ψlmin) decreased in early summer in response to a decrease in Gp, and that Gp did not recover until the expansion of new leaves in spring. However, we did not observe any changes in the leaf area index or other ecophysiological traits at the leaf level in response to this reduction in Gp. Furthermore, model simulations based on measured data revealed that the canopy-scale photosynthetic rate (Ac) was 15-25% higher than the simulated Ac when it was assumed that Ψlmin remained constant after spring but almost the same as the simulated Ac when it was assumed that Gp remained high even after spring. These findings indicate that R. pseudoacacia was frequently exposed to a reduced Gp at the study site but offset its effects on Ac by plastically lowering Ψlmin to avoid experiencing any further reduction in Gp or Gs.

  5. [Interrelations between plant communities and environmental factors of wetlands and surrounding lands in mid- and lower reaches of Tarim River].

    PubMed

    Zhao, Ruifeng; Zhou, Huarong; Qian, Yibing; Zhang, Jianjun

    2006-06-01

    A total of 16 quadrants of wetlands and surrounding lands in the mid- and lower reaches of Tarim River were surveyed, and the data about the characteristics of plant communities and environmental factors were collected and counted. By using PCA (principal component analysis) ordination and regression procedure, the distribution patterns of plant communities and the relationships between the characteristics of plant community structure and environmental factors were analyzed. The results showed that the distribution of the plant communities was closely related to soil moisture, salt, and nutrient contents. The accumulative contribution rate of soil moisture and salt contents in the first principal component accounted for 35.70%, and that of soil nutrient content in the second principal component reached 25.97%. There were 4 types of habitats for the plant community distribution, i. e., fenny--light salt--medium nutrient, moist--medium salt--medium nutrient, mesophytic--medium salt--low nutrient, and medium xerophytic-heavy salt--low nutrient. Along these habitats, swamp vegetation, meadow vegetation, riparian sparse forest, halophytic desert, and salinized shrub were distributed. In the wetlands and surrounding lands of mid- and lower reaches of Tarim River, the ecological dominance of the plant communities was markedly and unitary-linearly correlated with the compound gradient of soil moisture and salt contents. The relationships between species diversity, ecological dominance, and compound gradient of soil moisture and salt contents were significantly accorded to binary-linear regression model.

  6. On-plant movement and feeding of western bean cutworm (Lepidoptera: Noctuidae) early instars on corn.

    PubMed

    Paula-Moraes, S V; Hunt, T E; Wright, R J; Hein, G L; Blankenship, E E

    2012-12-01

    Western bean cutworm, Striacosta albicosta (Smith), has undergone a recent eastward expansion from the western U.S. Corn Belt to Pennsylvania and parts of Canada. Little is known about its ecology and behavior, particularly during the early instars, on corn (Zea mays L.). There is a narrow treatment window for larvae, and early detection of the pest in the field is essential. An understanding of western bean cutworm larval feeding and early-instar dispersal is essential to understand larval survival and establishment in corn. Studies were conducted in 2009 through 2011 in Nebraska to determine the feeding and dispersal of early-instar western bean cutworm on corn. The treatment design was a factorial with three corn stages (pretassel, tassel, and posttassel) and five corn plant zones (tassel, above ear, primary ear, secondary ear, and below ear) in a randomized complete block design. The effects of different corn tissues on larval survival and development were investigated in laboratory studies in a randomized complete block design during 2009 and 2011. Treatments were different corn tissues (leaf alone, leaf with developing tassel, pollen, pollen plus silk, and silk alone). Results demonstrated that neonate larvae move to the upper part of the plant, independent of corn stage. Larval growth was optimal when fed on tassel tissue. Overall results indicated a selective benefit for movement of the early instar to upper part of the plant.

  7. Land Snails as a Diet Diversification Proxy during the Early Upper Palaeolithic in Europe

    PubMed Central

    Fernández-López de Pablo, Javier; Badal, Ernestina; Ferrer García, Carlos; Martínez-Ortí, Alberto; Sanchis Serra, Alfred

    2014-01-01

    Despite the ubiquity of terrestrial gastropods in the Late Pleistocene and Holocene archaeological record, it is still unknown when and how this type of invertebrate resource was incorporated into human diets. In this paper, we report the oldest evidence of land snail exploitation as a food resource in Europe dated to 31.3-26.9 ka yr cal BP from the recently discovered site of Cova de la Barriada (eastern Iberian Peninsula). Mono-specific accumulations of large Iberus alonensis land snails (Ferussac 1821) were found in three different archaeological levels in association with combustion structures, along with lithic and faunal assemblages. Using a new analytical protocol based on taphonomic, microX-Ray Diffractometer (DXR) and biometric analyses, we investigated the patterns of selection, consumption and accumulation of land snails at the site. The results display a strong mono-specific gathering of adult individuals, most of them older than 55 weeks, which were roasted in ambers of pine and juniper under 375°C. This case study uncovers new patterns of invertebrate exploitation during the Gravettian in southwestern Europe without known precedents in the Middle Palaeolithic nor the Aurignacian. In the Mediterranean context, such an early occurrence contrasts with the neighbouring areas of Morocco, France, Italy and the Balkans, where the systematic nutritional use of land snails appears approximately 10,000 years later during the Iberomaurisian and the Late Epigravettian. The appearance of this new subsistence activity in the eastern and southern regions of Spain was coeval to other demographically driven transformations in the archaeological record, suggesting different chronological patterns of resource intensification and diet broadening along the Upper Palaeolithic in the Mediterranean basin. PMID:25141047

  8. Land snails as a diet diversification proxy during the early upper palaeolithic in Europe.

    PubMed

    Fernández-López de Pablo, Javier; Badal, Ernestina; Ferrer García, Carlos; Martínez-Ortí, Alberto; Sanchis Serra, Alfred

    2014-01-01

    Despite the ubiquity of terrestrial gastropods in the Late Pleistocene and Holocene archaeological record, it is still unknown when and how this type of invertebrate resource was incorporated into human diets. In this paper, we report the oldest evidence of land snail exploitation as a food resource in Europe dated to 31.3-26.9 ka yr cal BP from the recently discovered site of Cova de la Barriada (eastern Iberian Peninsula). Mono-specific accumulations of large Iberus alonensis land snails (Ferussac 1821) were found in three different archaeological levels in association with combustion structures, along with lithic and faunal assemblages. Using a new analytical protocol based on taphonomic, microX-Ray Diffractometer (DXR) and biometric analyses, we investigated the patterns of selection, consumption and accumulation of land snails at the site. The results display a strong mono-specific gathering of adult individuals, most of them older than 55 weeks, which were roasted in ambers of pine and juniper under 375°C. This case study uncovers new patterns of invertebrate exploitation during the Gravettian in southwestern Europe without known precedents in the Middle Palaeolithic nor the Aurignacian. In the Mediterranean context, such an early occurrence contrasts with the neighbouring areas of Morocco, France, Italy and the Balkans, where the systematic nutritional use of land snails appears approximately 10,000 years later during the Iberomaurisian and the Late Epigravettian. The appearance of this new subsistence activity in the eastern and southern regions of Spain was coeval to other demographically driven transformations in the archaeological record, suggesting different chronological patterns of resource intensification and diet broadening along the Upper Palaeolithic in the Mediterranean basin.

  9. Anticipating land surface change

    PubMed Central

    Streeter, Richard; Dugmore, Andrew J.

    2013-01-01

    The interplay of human actions and natural processes over varied spatial and temporal scales can result in abrupt transitions between contrasting land surface states. Understanding these transitions is a key goal of sustainability science because they can represent abrupt losses of natural capital. This paper recognizes flickering between alternate land surface states in advance of threshold change and critical slowing down in advance of both threshold changes and noncritical transformation. The early warning signals we observe are rises in autocorrelation, variance, and skewness within millimeter-resolution thickness measurements of tephra layers deposited in A.D. 2010 and A.D. 2011. These signals reflect changing patterns of surface vegetation, which are known to provide early warning signals of critical transformations. They were observed toward migrating soil erosion fronts, cryoturbation limits, and expanding deflation zones, thus providing potential early warning signals of land surface change. The record of the spatial patterning of vegetation contained in contemporary tephra layers shows how proximity to land surface change could be assessed in the widespread regions affected by shallow layers of volcanic fallout (those that can be subsumed within the existing vegetation cover). This insight shows how we could use tephra layers in the stratigraphic record to identify “near misses,” close encounters with thresholds that did not lead to tipping points, and thus provide additional tools for archaeology, sustainability science, and contemporary land management. PMID:23530230

  10. The use of landscape fabric and supplemental irrigation to enhance survival and growth of woody perennials planted on reclaimed surface mine lands

    Treesearch

    R .C. Musselman; F. W. Smith; W. D. Shepperd; L. A. Asherin; B. W. Gee

    2009-01-01

    A study was initiated to determine the effectiveness of landscape fabric and supplemental irrigation in survival and growth of woody perennials planted on reclaimed surface coal mine lands. The study compared growth and survival of nursery grown potted aspen and serviceberry planted with or without landscape fabric, and with or without biweekly supplemental irrigation...

  11. Conserved regulatory mechanism controls the development of cells with rooting functions in land plants

    PubMed Central

    Tam, Thomas Ho Yuen; Catarino, Bruno; Dolan, Liam

    2015-01-01

    Land plants develop filamentous cells—root hairs, rhizoids, and caulonemata—at the interface with the soil. Members of the group XI basic helix–loop–helix (bHLH) transcription factors encoded by LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) genes positively regulate the development of root hairs in the angiosperms Lotus japonicus, Arabidopsis thaliana, and rice (Oryza sativa). Here we show that auxin promotes rhizoid and caulonema development by positively regulating the expression of PpLRL1 and PpLRL2, the two LRL genes in the Physcomitrella patens genome. Although the group VIII bHLH proteins, AtROOT HAIR DEFECTIVE6 and AtROOT HAIR DEFECTIVE SIX-LIKE1, promote root-hair development by positively regulating the expression of AtLRL3 in A. thaliana, LRL genes promote rhizoid development independently of PpROOT HAIR DEFECTIVE SIX-LIKE1 and PpROOT HAIR DEFECITVE SIX-LIKE2 (PpRSL1 and PpRSL2) gene function in P. patens. Together, these data demonstrate that both LRL and RSL genes are components of an ancient auxin-regulated gene network that controls the development of tip-growing cells with rooting functions among most extant land plants. Although this network has diverged in the moss and the angiosperm lineages, our data demonstrate that the core network acted in the last common ancestor of the mosses and angiosperms that existed sometime before 420 million years ago. PMID:26150509

  12. Sulphur limitation and early sulphur deficiency responses in poplar: significance of gene expression, metabolites, and plant hormones

    PubMed Central

    Honsel, Anne; Kojima, Mikiko; Haas, Richard; Frank, Wolfgang; Sakakibara, Hitoshi; Herschbach, Cornelia; Rennenberg, Heinz

    2012-01-01

    The influence of sulphur (S) depletion on the expression of genes related to S metabolism, and on metabolite and plant hormone contents was analysed in young and mature leaves, fine roots, xylem sap, and phloem exudates of poplar (Populus tremula×Populus alba) with special focus on early consequences. S depletion was applied by a gradual decrease of sulphate availability. The observed changes were correlated with sulphate contents. Based on the decrease in sulphate contents, two phases of S depletion could be distinguished that were denominated as ‘S limitation’ and ‘early S deficiency’. S limitation was characterized by improved sulphate uptake (enhanced root-specific sulphate transporter PtaSULTR1;2 expression) and reduction capacities (enhanced adenosine 5′-phosphosulphate (APS) reductase expression) and by enhanced remobilization of sulphate from the vacuole (enhanced putative vacuolar sulphate transporter PtaSULTR4;2 expression). During early S deficiency, whole plant distribution of S was impacted, as indicated by increasing expression of the phloem-localized sulphate transporter PtaSULTR1;1 and by decreasing glutathione contents in fine roots, young leaves, mature leaves, and phloem exudates. Furthermore, at ‘early S deficiency’, expression of microRNA395 (miR395), which targets transcripts of PtaATPS3/4 (ATP sulphurylase) for cleavage, increased. Changes in plant hormone contents were observed at ‘early S deficiency’ only. Thus, S depletion affects S and plant hormone metabolism of poplar during ‘S limitation’ and ‘early S deficiency’ in a time series of events. Despite these consequences, the impact of S depletion on growth of poplar plants appears to be less severe than in Brassicaceae such as Arabidopsis thaliana or Brassica sp. PMID:22162873

  13. Identification of Sweet Sorghum accessions with seedling cold tolerance using both lab cold germination test and field early Spring planting evaluation

    USDA-ARS?s Scientific Manuscript database

    Cultivars with quick seedling emergence and stand establishment at early spring cold conditions may be planted early in the same region with an extended period of plant growth and can potentially increase either grain yield, stem sugar yield, or biomass production of sorghum. Planting cultivars with...

  14. Evolution of green plants as deduced from 5S rRNA sequences.

    PubMed

    Hori, H; Lim, B L; Osawa, S

    1985-02-01

    We have constructed a phylogenic tree for green plants by comparing 5S rRNA sequences. The tree suggests that the emergence of most of the uni- and multicellular green algae such as Chlamydomonas, Spirogyra, Ulva, and Chlorella occurred in the early stage of green plant evolution. The branching point of Nitella is a little earlier than that of land plants and much later than that of the above green algae, supporting the view that Nitella-like green algae may be the direct precursor to land plants. The Bryophyta and the Pteridophyta separated from each other after emergence of the Spermatophyta. The result is consistent with the view that the Bryophyta evolved from ferns by degeneration. In the Pteridophyta, Psilotum (whisk fern) separated first, and a little later Lycopodium (club moss) separated from the ancestor common to Equisetum (horsetail) and Dryopteris (fern). This order is in accordance with the classical view. During the Spermatophyta evolution, the gymnosperms (Cycas, Ginkgo, and Metasequoia have been studied here) and the angiosperms (flowering plants) separated, and this was followed by the separation of Metasequoia and Cycas (cycad)/Ginkgo (maidenhair tree) on one branch and various flowering plants on the other.

  15. Evolution of green plants as deduced from 5S rRNA sequences

    PubMed Central

    Hori, Hiroshi; Lim, Byung-Lak; Osawa, Syozo

    1985-01-01

    We have constructed a phylogenic tree for green plants by comparing 5S rRNA sequences. The tree suggests that the emergence of most of the uni- and multicellular green algae such as Chlamydomonas, Spirogyra, Ulva, and Chlorella occurred in the early stage of green plant evolution. The branching point of Nitella is a little earlier than that of land plants and much later than that of the above green algae, supporting the view that Nitella-like green algae may be the direct precursor to land plants. The Bryophyta and the Pteridophyta separated from each other after emergence of the Spermatophyta. The result is consistent with the view that the Bryophyta evolved from ferns by degeneration. In the Pteridophyta, Psilotum (whisk fern) separated first, and a little later Lycopodium (club moss) separated from the ancestor common to Equisetum (horsetail) and Dryopteris (fern). This order is in accordance with the classical view. During the Spermatophyta evolution, the gymnosperms (Cycas, Ginkgo, and Metasequoia have been studied here) and the angiosperms (flowering plants) separated, and this was followed by the separation of Metasequoia and Cycas (cycad)/Ginkgo (maidenhair tree) on one branch and various flowering plants on the other. PMID:16593540

  16. An evolutionarily conserved NIMA-related kinase directs rhizoid tip growth in the basal land plant Marchantia polymorpha.

    PubMed

    Otani, Kento; Ishizaki, Kimitsune; Nishihama, Ryuichi; Takatani, Shogo; Kohchi, Takayuki; Takahashi, Taku; Motose, Hiroyasu

    2018-03-01

    Tip growth is driven by turgor pressure and mediated by the polarized accumulation of cellular materials. How a single polarized growth site is established and maintained is unclear. Here, we analyzed the function of NIMA-related protein kinase 1 (MpNEK1) in the liverwort Marchantia polymorpha In the wild type, rhizoid cells differentiate from the ventral epidermis and elongate through tip growth to form hair-like protrusions. In Mp nek1 knockout mutants, rhizoids underwent frequent changes in growth direction, resulting in a twisted and/or spiral morphology. The functional MpNEK1-Citrine protein fusion localized to microtubule foci in the apical growing region of rhizoids. Mp nek1 knockouts exhibited increases in both microtubule density and bundling in the apical dome of rhizoids. Treatment with the microtubule-stabilizing drug taxol phenocopied the Mp nek1 knockout. These results suggest that MpNEK1 directs tip growth in rhizoids through microtubule organization. Furthermore, MpNEK1 expression rescued ectopic outgrowth of epidermal cells in the Arabidopsis thaliana nek6 mutant, strongly supporting an evolutionarily conserved NEK-dependent mechanism of directional growth. It is possible that such a mechanism contributed to the evolution of the early rooting system in land plants. © 2018. Published by The Company of Biologists Ltd.

  17. Genesis of the Lunar Landing Vehicle

    NASA Technical Reports Server (NTRS)

    Gelzer, Christian

    2009-01-01

    The author examines early research regarding return flight from a Moon landing made prior to President Kennedy's 1961 challenge to put men on the Moon before the end of the decade. Organizations involved in early research include NACA, the Flight Research Center (now Dryden) Bell Aircraft Corporation. The discussion focuses on development of a flight simulator to model the Moon's reduced gravity and development of the Lunar Landing Research Vehicle.

  18. The distribution of early recombination nodules on zygotene bivalents from plants.

    PubMed Central

    Anderson, L K; Hooker, K D; Stack, S M

    2001-01-01

    Early recombination nodules (ENs) are protein complexes approximately 100 nm in diameter that are associated with forming synaptonemal complexes (SCs) during leptotene and zygotene of meiosis. Although their functions are not yet clear, ENs may have roles in synapsis and recombination. Here we report on the frequency and distribution of ENs in zygotene SC spreads from six plant species that include one lower vascular plant, two dicots, and three monocots. For each species, the number of ENs per unit length is higher for SC segments than for (asynapsed) axial elements (AEs). In addition, EN number is strongly correlated with SC segment length. There are statistically significant differences in EN frequencies on SCs between species, but these differences are not related to genome size, number of chromosomes, or phylogenetic class. There is no difference in the frequency of ENs per unit length of SC from early to late zygotene. The distribution of distances between adjacent ENs on SC segments is random for all six species, but ENs are found at synaptic forks more often than expected for a random distribution of ENs on SCs. From these observations, we conclude that in plants: (1) some ENs bind to AEs prior to synapsis, (2) most ENs bind to forming SCs at synaptic forks, and (3) ENs do not bind to already formed SCs. PMID:11729167

  19. Influence of high-latitude warming and land-use changes in the early 20th century northern Eurasian CO2 sink

    NASA Astrophysics Data System (ADS)

    Bastos, Ana; Peregon, Anna; Gani, Érico A.; Khudyaev, Sergey; Yue, Chao; Li, Wei; Gouveia, Célia M.; Ciais, Philippe

    2018-06-01

    While the global carbon budget (GCB) is relatively well constrained over the last decades of the 20th century [1], observations and reconstructions of atmospheric CO2 growth rate present large discrepancies during the earlier periods [2]. The large uncertainty in GCB has been attributed to the land biosphere, although it is not clear whether the gaps between observations and reconstructions are mainly because land-surface models (LSMs) underestimate inter-annual to decadal variability in natural ecosystems, or due to inaccuracies in land-use change reconstructions. As Eurasia encompasses about 15% of the terrestrial surface, 20% of the global soil organic carbon pool and constitutes a large CO2 sink, we evaluate the potential contribution of natural and human-driven processes to induce large anomalies in the biospheric CO2 fluxes in the early 20th century. We use an LSM specifically developed for high-latitudes, that correctly simulates Eurasian C-stocks and fluxes from observational records [3], in order to evaluate the sensitivity of the Eurasian sink to the strong high-latitude warming occurring between 1930 and 1950. We show that the LSM with improved high-latitude phenology, hydrology and soil processes, contrary to the group of LSMs in [2], is able to represent enhanced vegetation growth linked to boreal spring warming, consistent with tree-ring time-series [4]. By compiling a dataset of annual agricultural area in the Former Soviet Union that better reflects changes in cropland area linked with socio-economic fluctuations during the early 20th century, we show that land-abadonment during periods of crisis and war may result in reduced CO2 emissions from land-use change (44%–78% lower) detectable at decadal time-scales. Our study points to key processes that may need to be improved in LSMs and LUC datasets in order to better represent decadal variability in the land CO2 sink, and to better constrain the GCB during the pre-observational record.

  20. Using LIDAR and Quickbird Data to Model Plant Production and Quantify Uncertainties Associated with Wetland Detection and Land Cover Generalizations

    NASA Technical Reports Server (NTRS)

    Cook, Bruce D.; Bolstad, Paul V.; Naesset, Erik; Anderson, Ryan S.; Garrigues, Sebastian; Morisette, Jeffrey T.; Nickeson, Jaime; Davis, Kenneth J.

    2009-01-01

    Spatiotemporal data from satellite remote sensing and surface meteorology networks have made it possible to continuously monitor global plant production, and to identify global trends associated with land cover/use and climate change. Gross primary production (GPP) and net primary production (NPP) are routinely derived from the MOderate Resolution Imaging Spectroradiometer (MODIS) onboard satellites Terra and Aqua, and estimates generally agree with independent measurements at validation sites across the globe. However, the accuracy of GPP and NPP estimates in some regions may be limited by the quality of model input variables and heterogeneity at fine spatial scales. We developed new methods for deriving model inputs (i.e., land cover, leaf area, and photosynthetically active radiation absorbed by plant canopies) from airborne laser altimetry (LiDAR) and Quickbird multispectral data at resolutions ranging from about 30 m to 1 km. In addition, LiDAR-derived biomass was used as a means for computing carbon-use efficiency. Spatial variables were used with temporal data from ground-based monitoring stations to compute a six-year GPP and NPP time series for a 3600 ha study site in the Great Lakes region of North America. Model results compared favorably with independent observations from a 400 m flux tower and a process-based ecosystem model (BIOME-BGC), but only after removing vapor pressure deficit as a constraint on photosynthesis from the MODIS global algorithm. Fine resolution inputs captured more of the spatial variability, but estimates were similar to coarse-resolution data when integrated across the entire vegetation structure, composition, and conversion efficiencies were similar to upland plant communities. Plant productivity estimates were noticeably improved using LiDAR-derived variables, while uncertainties associated with land cover generalizations and wetlands in this largely forested landscape were considered less important.

  1. Early land use and centennial scale changes in lake-water organic carbon prior to contemporary monitoring.

    PubMed

    Meyer-Jacob, Carsten; Tolu, Julie; Bigler, Christian; Yang, Handong; Bindler, Richard

    2015-05-26

    Organic carbon concentrations have increased in surface waters across parts of Europe and North America during the past decades, but the main drivers causing this phenomenon are still debated. A lack of observations beyond the last few decades inhibits a better mechanistic understanding of this process and thus a reliable prediction of future changes. Here we present past lake-water organic carbon trends inferred from sediment records across central Sweden that allow us to assess the observed increase on a centennial to millennial time scale. Our data show the recent increase in lake-water carbon but also that this increase was preceded by a landscape-wide, long-term decrease beginning already A.D. 1450-1600. Geochemical and biological proxies reveal that these dynamics coincided with an intensification of human catchment disturbance that decreased over the past century. Catchment disturbance was driven by the expansion and later cessation of widespread summer forest grazing and farming across central Scandinavia. Our findings demonstrate that early land use strongly affected past organic carbon dynamics and suggest that the influence of historical landscape utilization on contemporary changes in lake-water carbon levels has thus far been underestimated. We propose that past changes in land use are also a strong contributing factor in ongoing organic carbon trends in other regions that underwent similar comprehensive changes due to early cultivation and grazing over centuries to millennia.

  2. Land-use change has no detectable effect on reproduction of a disturbance-adapted, hawkmoth-pollinated plant species.

    PubMed

    Skogen, Krissa A; Jogesh, Tania; Hilpman, Evan T; Todd, Sadie L; Rhodes, Matthew K; Still, Shannon M; Fant, Jeremie B

    2016-11-01

    Land-use change is cited as a primary driver of global biodiversity loss, with myriad consequences for species, populations, and ecosystems. However, few studies have examined its impact on species interactions, particularly pollination. Furthermore, when the effects of land-use change on pollination have been studied, the focus has largely been on species pollinated by diurnal pollinators, namely, bees and butterflies. Here, we focus on Oenothera harringtonii, a night-flowering, disturbance-adapted species that has experienced a range-wide gradient of land-use change. We tested the hypothesis that the negative impacts of land-use change are mitigated by long-distance pollination. Our study included both temporal (4 yr) and spatial (19 populations range-wide, and 1, 2, and 5 km from the population center) data, providing a comprehensive understanding of the role of land-use change on pollination biology and reproduction. We first confirmed that O. harringtonii is self-incompatible and reliant on pollinators for reproduction. We then showed that hawkmoths (primarily Hyles lineata) are highly reliable and effective pollinators in both space and time. Unlike other studies, we did not detect an effect of population size, increased isolation, or a reduction in suitable habitat in areas with evidence of land-use change on pollination (visitation, pollen removal and deposition). Furthermore, the proportion of suitable habitat and other fragmentation metrics examined were not associated with population size or density in this plant species. We conclude that nocturnal pollination of Oenothera harringtonii via hawkmoths is robust to the negative impacts of land-use change. © 2016 Skogen et al. Published by the Botanical Society of America. This work is licensed under a Creative Commons Attribution License (CC-BY).

  3. Plant twitter: ligands under 140 amino acids enforcing stomatal patterning.

    PubMed

    Rychel, Amanda L; Peterson, Kylee M; Torii, Keiko U

    2010-05-01

    Stomata are an essential land plant innovation whose patterning and density are under genetic and environmental control. Recently, several putative ligands have been discovered that influence stomatal density, and they all belong to the epidermal patterning factor-like family of secreted cysteine-rich peptides. Two of these putative ligands, EPF1 and EPF2, are expressed exclusively in the stomatal lineage cells and negatively regulate stomatal density. A third, EPFL6 or CHALLAH, is also a negative regulator of density, but is expressed subepidermally in the hypocotyl. A fourth, EPFL9 or STOMAGEN, is expressed in the mesophyll tissues and is a positive regulator of density. Genetic evidence suggests that these ligands may compete for the same receptor complex. Proper stomatal patterning is likely to be an intricate process involving ligand competition, regional specificity, and communication between tissue layers. EPFL-family genes exist in the moss Physcomitrella patens, the lycophyte Selaginella moellendorffii, and rice, Oryza sativa, and their sequence analysis yields several genes some of which are related to EPF1, EPF2, EPFL6, and EPFL9. Presence of these EPFL family members in the basal land plants suggests an exciting hypothesis that the genetic components for stomatal patterning originated early in land plant evolution.

  4. Aquatic versus land-based exercises as early functional rehabilitation for elite athletes with acute lower extremity ligament injury: a pilot study.

    PubMed

    Kim, Eunkuk; Kim, Taegyu; Kang, Hyunyong; Lee, Jongha; Childers, Martin K

    2010-08-01

    To compare outcomes between aquatic and land-based exercises during early-phase recovery from acute lower extremity ligament injuries in elite athletes. A single-blinded, covariate adaptive randomized, controlled study. National training center for elite athletes. Twenty-two athletes with isolated grade I or II ligament injury in ankles or knees were randomized into either an aquatic or land-based exercise group. Early functional rehabilitation program (ranging, strengthening, proprioceptive training, and functional exercises) was performed in both groups. All exercises were identical except for the training environment. Data were collected at baseline and at 2 and 4 weeks using a visual analog scale (VAS) for pain; static stability (overall stability index [OSI] level 5 and 3); dynamic stability (TCT), and percentage single-limb support time (%SLST). Both groups showed decreases in VAS, OSI 5 and 3, and TCT, with a concomitant increase in %SLST at 2 and 4 weeks (P < .05). No significant differences were detected between the 2 groups in any of the outcome measures. However, the line graphs for VAS, OSI 3, TCT, and %SLST in the aquatic exercise group were steeper than those in the land-based exercise group indicating significant group by time interactions (P < .05). These data indicate that the aquatic exercise group improved more rapidly than the land-based exercise group. For elite athletes with acute ligament sprains in the lower limb, aquatic exercises may provide advantages over standard land-based therapy for rapid return to athletic activities. Consequently, aquatic exercise could be recommended for the initial phase of a rehabilitation program. Copyright © 2010 American Academy of Physical Medicine and Rehabilitation. Published by Elsevier Inc. All rights reserved.

  5. "Planting the Seeds of Science." Development and Evaluation of a New Flexible and Adaptable Early Childhood Science Resource

    ERIC Educational Resources Information Center

    Howitt, Christine

    2011-01-01

    "Planting the Seeds of Science" is a new early childhood science resource developed through a collaboration between science/engineering academics, early childhood teacher educators and early childhood pre-service teachers, with funding from the Australian Learning and Teaching Council. Based on best practice early childhood principles,…

  6. 24 CFR 1710.107 - Risks of buying land.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... of the land. Changes in plant and animal life, air and water quality and noise levels may affect your... 24 Housing and Urban Development 5 2010-04-01 2010-04-01 false Risks of buying land. 1710.107... URBAN DEVELOPMENT (INTERSTATE LAND SALES REGISTRATION PROGRAM) LAND REGISTRATION Reporting Requirements...

  7. Land-Use and Socioeconomic Change, Medicinal Plant Selection and Biodiversity Resilience in Far Western Nepal

    PubMed Central

    Baral, Kedar; Paudel, Prashant; Acharya, Ram P.; Thapa-Magar, Khum B.; Cameron, Mary; Bussmann, Rainer W.

    2016-01-01

    Indigenous plant use-systems have evolved under, and constantly adapted to human and non-human impacts. In the last decades however, increasing socioeconomic and cultural transformations, including land-use change, outmigration, globalized markets, the introduction of new species, and climate change have led to a decreasing availability of indigenous resources, and are ultimately leading to a reduction of local use-knowledge. Participant observations, discussions, walks-in-the-woods, semi-structured interviews and informal meetings were carried out in 12 villages of far western Nepal between 2011 and 2015 to assess how sociocultural changes have affected the sustenance of indigenous systems and local biodiversity, when compared to studies carried out in the previous decades. Our findings show that there were no statistically significant differences in subject variable means, but differences were relatively important to plant parts-use and plant growth-forms (p = 0.183 and 0.088 respectively). Cissampelos pareira, Acorus calamus, Calotropis gigantea were found to have the greatest relative importance, whereas Ageratina adenophora, Melia azedarach, Carum carvi were most important based on use values. Among them, C. pareira and A. adenophora were introduced. The spatial distribution of species collected for medicine showed that all habitats were important for collection however, habitats close to villages were more favored. The use of non-indigenous and easily available species and more accessible habitats is becoming more prevalent as primary forests become increasingly overexploited, indigenous species become limited, and sociocultural cause of land use change expand. The utilization of indigenous and non-indigenous species and nearby habitats, although possibly affecting the quality of medicinal species, nonetheless reveals the dynamism of indigenous medicines as an adaptive asset mitigating human and non-human environmental changes. PMID:27936247

  8. Land-Use and Socioeconomic Change, Medicinal Plant Selection and Biodiversity Resilience in Far Western Nepal.

    PubMed

    Kunwar, Ripu M; Baral, Kedar; Paudel, Prashant; Acharya, Ram P; Thapa-Magar, Khum B; Cameron, Mary; Bussmann, Rainer W

    2016-01-01

    Indigenous plant use-systems have evolved under, and constantly adapted to human and non-human impacts. In the last decades however, increasing socioeconomic and cultural transformations, including land-use change, outmigration, globalized markets, the introduction of new species, and climate change have led to a decreasing availability of indigenous resources, and are ultimately leading to a reduction of local use-knowledge. Participant observations, discussions, walks-in-the-woods, semi-structured interviews and informal meetings were carried out in 12 villages of far western Nepal between 2011 and 2015 to assess how sociocultural changes have affected the sustenance of indigenous systems and local biodiversity, when compared to studies carried out in the previous decades. Our findings show that there were no statistically significant differences in subject variable means, but differences were relatively important to plant parts-use and plant growth-forms (p = 0.183 and 0.088 respectively). Cissampelos pareira, Acorus calamus, Calotropis gigantea were found to have the greatest relative importance, whereas Ageratina adenophora, Melia azedarach, Carum carvi were most important based on use values. Among them, C. pareira and A. adenophora were introduced. The spatial distribution of species collected for medicine showed that all habitats were important for collection however, habitats close to villages were more favored. The use of non-indigenous and easily available species and more accessible habitats is becoming more prevalent as primary forests become increasingly overexploited, indigenous species become limited, and sociocultural cause of land use change expand. The utilization of indigenous and non-indigenous species and nearby habitats, although possibly affecting the quality of medicinal species, nonetheless reveals the dynamism of indigenous medicines as an adaptive asset mitigating human and non-human environmental changes.

  9. Rubber and Land-Cover Land-Use Change in Mainland Southeast Asia

    NASA Astrophysics Data System (ADS)

    Fox, J. M.; Hurni, K.

    2017-12-01

    Over the past half century, the five countries of Mainland Southeast Asia (MSEA) - Cambodia, Laos, Myanmar, Thailand, and Vietnam - have witnessed major shifts from predominantly subsistence agrarian economies to increasingly commercialized agriculture. Major drivers of change include policy initiatives that fostered regional economic integration and promoted among other changes rapid expansion of boom-crop plantations. Among the many types of commercial boom crops promoted and grown in MSEA are numerous tree-based products such as rubber, coffee, tree species for pulp and paper (particularly eucalyptus and acacia), cashews, and fruits such as oranges, lychees, and longans. The project proposal hypothesized that most (but not all) tree crops replaced swidden cultivation fields and hence are not necessarily accompanied by deforestation. We used MODIS EVI and SWIR time-series from 2001-2014 to classify changes in tree cover across MSEA; a total of 6849 sample points were used to train the classifier (75%) and verification (25%). The classification consists of 24 classes and 17 classes represent tree crops. Project results suggest that 4.4 m ha of rubber have been planted since 2003; 50% of rubber is planted on former evergreen forest land, 18% on deciduous forest land, and 32% on low vegetation area (former crop lands, bushes, scrub). Tree crops occupy about 8% of the landscape (half of that is rubber). Due to the differences in their political and economic histories these countries display different LCLUCs. In northern Laos, smallholder rubber plantations dominate and shifting cultivation is common in the upland. In southern Laos, large-scale plantations of rubber, coffee, eucalyptus, and sugarcane are widespread. In Thailand, vast areas are covered by annual agriculture; fruit trees and rubber are the prevailing tree crops and are mostly planted by smallholders. In Cambodia, large-scale rubber plantations have expanded in recent years on forest lands; smallholder

  10. Global Land Carbon Uptake from Trait Distributions

    NASA Astrophysics Data System (ADS)

    Butler, E. E.; Datta, A.; Flores-Moreno, H.; Fazayeli, F.; Chen, M.; Wythers, K. R.; Banerjee, A.; Atkin, O. K.; Kattge, J.; Reich, P. B.

    2016-12-01

    Historically, functional diversity in land surface models has been represented through a range of plant functional types (PFTs), each of which has a single value for all of its functional traits. Here we expand the diversity of the land surface by using a distribution of trait values for each PFT. The data for these trait distributions is from a sub-set of the global database of plant traits, TRY, and this analysis uses three leaf traits: mass based nitrogen and phosphorus content and specific leaf area, which influence both photosynthesis and respiration. The data are extrapolated into continuous surfaces through two methodologies. The first, a categorical method, classifies the species observed in TRY into satellite estimates of their plant functional type abundances - analogous to how traits are currently assigned to PFTs in land surface models. Second, a Bayesian spatial method which additionally estimates how the distribution of a trait changes in accord with both climate and soil covariates. These two methods produce distinct patterns of diversity which are incorporated into a land surface model to estimate how the range of trait values affects the global land carbon budget.

  11. The polyphenol oxidase gene family in land plants: Lineage-specific duplication and expansion

    PubMed Central

    2012-01-01

    Background Plant polyphenol oxidases (PPOs) are enzymes that typically use molecular oxygen to oxidize ortho-diphenols to ortho-quinones. These commonly cause browning reactions following tissue damage, and may be important in plant defense. Some PPOs function as hydroxylases or in cross-linking reactions, but in most plants their physiological roles are not known. To better understand the importance of PPOs in the plant kingdom, we surveyed PPO gene families in 25 sequenced genomes from chlorophytes, bryophytes, lycophytes, and flowering plants. The PPO genes were then analyzed in silico for gene structure, phylogenetic relationships, and targeting signals. Results Many previously uncharacterized PPO genes were uncovered. The moss, Physcomitrella patens, contained 13 PPO genes and Selaginella moellendorffii (spike moss) and Glycine max (soybean) each had 11 genes. Populus trichocarpa (poplar) contained a highly diversified gene family with 11 PPO genes, but several flowering plants had only a single PPO gene. By contrast, no PPO-like sequences were identified in several chlorophyte (green algae) genomes or Arabidopsis (A. lyrata and A. thaliana). We found that many PPOs contained one or two introns often near the 3’ terminus. Furthermore, N-terminal amino acid sequence analysis using ChloroP and TargetP 1.1 predicted that several putative PPOs are synthesized via the secretory pathway, a unique finding as most PPOs are predicted to be chloroplast proteins. Phylogenetic reconstruction of these sequences revealed that large PPO gene repertoires in some species are mostly a consequence of independent bursts of gene duplication, while the lineage leading to Arabidopsis must have lost all PPO genes. Conclusion Our survey identified PPOs in gene families of varying sizes in all land plants except in the genus Arabidopsis. While we found variation in intron numbers and positions, overall PPO gene structure is congruent with the phylogenetic relationships based on

  12. Influence of establishment timing and planting stock on early rotational growth of loblolly pine plantations in Texas

    Treesearch

    M. A. Blazier; E. L. Taylor; A. G. Holley

    2010-01-01

    Planting container seedlings, which have relatively fully formed root systems encased in a soil-filled plug, may improve loblolly pine plantation productivity by increasing early survival and growth relative to that of conventionally planted bareroot seedlings. Planting seedlings in fall may also confer productivity increases to loblolly pine plantations by giving...

  13. Does fallow planted soybean and sweet sorghum reduce plant cane density?

    USDA-ARS?s Scientific Manuscript database

    Sugarcane is planted to approximately 172,000 hectares in Louisiana annually and nearly 25% of a sugarcane growers’ land that is to be planted to sugarcane remains fallow 8 to 10 months each year. During the fallow period land is regraded to improve drainage, and weeds are controlled by herbicides a...

  14. Emerging crops in the USDA arid lands germplasm collection

    USDA-ARS?s Scientific Manuscript database

    The USDA National Plant Germplasm System maintains collections of several emerging crops for arid lands at the National Arid Land Plant Genetic Resources Unit in Parlier, CA (NALPGRU). The guayule, jojoba, and prickly pear collections are most active in terms of current research and crop development...

  15. Origins and Missions of Two Early Land-Grant Colleges: Georgetown University and George Washington University. ASHE Annual Meeting 1980 Paper.

    ERIC Educational Resources Information Center

    Quigley, Martin S.

    The founding and missions of Georgetown University and George Washington University, two early land-grant colleges, are considered. The account is based partially on standard histories of the colleges, and other information comes from Congressional Records. Some understanding of why Congress took an interest in the founding and survival of…

  16. Germination and early plant development of 10 plant species exposed to Nano TiO2 and CeO2

    EPA Science Inventory

    Ten agronomic plant species were exposed to different concentrations of nano-TiO2 or CeO2 (0, 250, 500 and 1000 ug/l) and followed to examine effects on germination and early seedling development. For TiO2, cabbage showed increased and corn decreased percent germination, while ...

  17. Using LiDAR and quickbird data to model plant production and quantify uncertainties associated with wetland detection and land cover generalizations

    USGS Publications Warehouse

    Cook, B.D.; Bolstad, P.V.; Naesset, E.; Anderson, R. Scott; Garrigues, S.; Morisette, J.T.; Nickeson, J.; Davis, K.J.

    2009-01-01

    Spatiotemporal data from satellite remote sensing and surface meteorology networks have made it possible to continuously monitor global plant production, and to identify global trends associated with land cover/use and climate change. Gross primary production (GPP) and net primary production (NPP) are routinely derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard satellites Terra and Aqua, and estimates generally agree with independent measurements at validation sites across the globe. However, the accuracy of GPP and NPP estimates in some regions may be limited by the quality of model input variables and heterogeneity at fine spatial scales. We developed new methods for deriving model inputs (i.e., land cover, leaf area, and photosynthetically active radiation absorbed by plant canopies) from airborne laser altimetry (LiDAR) and Quickbird multispectral data at resolutions ranging from about 30??m to 1??km. In addition, LiDAR-derived biomass was used as a means for computing carbon-use efficiency. Spatial variables were used with temporal data from ground-based monitoring stations to compute a six-year GPP and NPP time series for a 3600??ha study site in the Great Lakes region of North America. Model results compared favorably with independent observations from a 400??m flux tower and a process-based ecosystem model (BIOME-BGC), but only after removing vapor pressure deficit as a constraint on photosynthesis from the MODIS global algorithm. Fine-resolution inputs captured more of the spatial variability, but estimates were similar to coarse-resolution data when integrated across the entire landscape. Failure to account for wetlands had little impact on landscape-scale estimates, because vegetation structure, composition, and conversion efficiencies were similar to upland plant communities. Plant productivity estimates were noticeably improved using LiDAR-derived variables, while uncertainties associated with land cover generalizations and

  18. Are different facets of plant diversity well protected against climate and land cover changes? A test study in the French Alps

    PubMed Central

    Thuiller, Wilfried; Guéguen, Maya; Georges, Damien; Bonet, Richard; Chalmandrier, Loïc; Garraud, Luc; Renaud, Julien; Roquet, Cristina; Van Es, Jérémie; Zimmermann, Niklaus E.; Lavergne, Sébastien

    2014-01-01

    Climate and land cover changes are important drivers of the plant species distributions and diversity patterns in mountainous regions. Although the need for a multifaceted view of diversity based on taxonomic, functional and phylogenetic dimensions is now commonly recognized, there are no complete risk assessments concerning their expected changes. In this paper, we used a range of species distribution models in an ensemble-forecasting framework together with regional climate and land cover projections by 2080 to analyze the potential threat for more than 2,500 plant species at high resolution (2.5 km × 2.5 km) in the French Alps. We also decomposed taxonomic, functional and phylogenetic diversity facets into α and β components and analyzed their expected changes by 2080. Overall, plant species threats from climate and land cover changes in the French Alps were expected to vary depending on the species’ preferred altitudinal vegetation zone, rarity, and conservation status. Indeed, rare species and species of conservation concern were the ones projected to experience less severe change, and also the ones being the most efficiently preserved by the current network of protected areas. Conversely, the three facets of plant diversity were also projected to experience drastic spatial re-shuffling by 2080. In general, the mean α-diversity of the three facets was projected to increase to the detriment of regional β-diversity, although the latter was projected to remain high at the montane-alpine transition zones. Our results show that, due to a high-altitude distribution, the current protection network is efficient for rare species, and species predicted to migrate upward. Although our modeling framework may not capture all possible mechanisms of species range shifts, our work illustrates that a comprehensive risk assessment on an entire floristic region combined with functional and phylogenetic information can help delimitate future scenarios of biodiversity and

  19. Dietary options and behavior suggested by plant biomarker evidence in an early human habitat

    NASA Astrophysics Data System (ADS)

    Magill, Clayton R.; Ashley, Gail M.; Domínguez-Rodrigo, Manuel; Freeman, Katherine H.

    2016-03-01

    The availability of plants and freshwater shapes the diets and social behavior of chimpanzees, our closest living relative. However, limited evidence about the spatial relationships shared between ancestral human (hominin) remains, edible resources, refuge, and freshwater leaves the influence of local resources on our species' evolution open to debate. Exceptionally well-preserved organic geochemical fossils-biomarkers-preserved in a soil horizon resolve different plant communities at meter scales across a contiguous 25,000 m2 archaeological land surface at Olduvai Gorge from about 2 Ma. Biomarkers reveal hominins had access to aquatic plants and protective woods in a patchwork landscape, which included a spring-fed wetland near a woodland that both were surrounded by open grassland. Numerous cut-marked animal bones are located within the wooded area, and within meters of wetland vegetation delineated by biomarkers for ferns and sedges. Taken together, plant biomarkers, clustered bone debris, and hominin remains define a clear spatial pattern that places animal butchery amid the refuge of an isolated forest patch and near freshwater with diverse edible resources.

  20. Recent land cover history and nutrient retention in riparian wetlands

    USGS Publications Warehouse

    Hogan, D.M.; Walbridge, M.R.

    2009-01-01

    Wetland ecosystems are profoundly affected by altered nutrient and sediment loads received from anthropogenic activity in their surrounding watersheds. Our objective was to compare a gradient of agricultural and urban land cover history during the period from 1949 to 1997, with plant and soil nutrient concentrations in, and sediment deposition to, riparian wetlands in a rapidly urbanizing landscape. We observed that recent agricultural land cover was associated with increases in Nitrogen (N) and Phosphorus (P) concentrations in a native wetland plant species. Conversely, recent urban land cover appeared to alter receiving wetland environmental conditions by increasing the relative availability of P versus N, as reflected in an invasive, but not a native, plant species. In addition, increases in surface soil Fe content suggests recent inputs of terrestrial sediments associated specifically with increasing urban land cover. The observed correlation between urban land cover and riparian wetland plant tissue and surface soil nutrient concentrations and sediment deposition, suggest that urbanization specifically enhances the suitability of riparian wetland habitats for the invasive species Japanese stiltgrass [Microstegium vimenium (Trinius) A. Camus]. ?? 2009 Springer Science+Business Media, LLC.

  1. On the Effects of the Evolution of Microbial Mats and Land Plants on the Earth as a Planet. Photometric and Spectroscopic Light Curves of Paleo-Earths

    NASA Astrophysics Data System (ADS)

    Sanromá, E.; Pallé, E.; García Munõz, A.

    2013-04-01

    Understanding the spectral and photometric variability of the Earth and the rest of the solar system planets has become of utmost importance for the future characterization of rocky exoplanets. As this is not only interesting at present times but also along the planetary evolution, we studied the effect that the evolution of microbial mats and plants over land has had on the way our planet looks from afar. As life evolved, continental surfaces changed gradually and non-uniformly from deserts through microbial mats to land plants, modifying the reflective properties of the ground and most likely the distribution of moisture and cloudiness. Here, we used a radiative transfer model of the Earth, together with geological paleo-records of the continental distribution and a reconstructed cloud distribution, to simulate the visible and near-IR radiation reflected by our planet as a function of Earth's rotation. We found that the evolution from deserts to microbial mats and to land plants produces detectable changes in the globally averaged Earth's reflectance. The variability of each surface type is located in different bands and can induce reflectance changes of up to 40% in period of hours. We conclude that by using photometric observations of an Earth-like planet at different photometric bands it would be possible to discriminate between different surface types. While recent literature proposes the red-edge feature of vegetation near 0.7 μm as a signature for land plants, observations in near-IR bands can be equally or even better suited for this purpose.

  2. Non-equivalent contributions of maternal and paternal genomes to early plant embryogenesis.

    PubMed

    Del Toro-De León, Gerardo; García-Aguilar, Marcelina; Gillmor, C Stewart

    2014-10-30

    Zygotic genome activation in metazoans typically occurs several hours to a day after fertilization, and thus maternal RNAs and proteins drive early animal embryo development. In plants, despite several molecular studies of post-fertilization transcriptional activation, the timing of zygotic genome activation remains a matter of debate. For example, two recent reports that used different hybrid ecotype combinations for RNA sequence profiling of early Arabidopsis embryo transcriptomes came to divergent conclusions. One identified paternal contributions that varied by gene, but with overall maternal dominance, while the other found that the maternal and paternal genomes are transcriptionally equivalent. Here we assess paternal gene activation functionally in an isogenic background, by performing a large-scale genetic analysis of 49 EMBRYO DEFECTIVE genes and testing the ability of wild-type paternal alleles to complement phenotypes conditioned by mutant maternal alleles. Our results demonstrate that wild-type paternal alleles for nine of these genes are completely functional 2 days after pollination, with the remaining 40 genes showing partial activity beginning at 2, 3 or 5 days after pollination. Using our functional assay, we also demonstrate that different hybrid combinations exhibit significant variation in paternal allele activation, reconciling the apparently contradictory results of previous transcriptional studies. The variation in timing of gene function that we observe confirms that paternal genome activation does not occur in one early discrete step, provides large-scale functional evidence that maternal and paternal genomes make non-equivalent contributions to early plant embryogenesis, and uncovers an unexpectedly profound effect of hybrid genetic backgrounds on paternal gene activity.

  3. Economic Analysis of Planting Forests on Rice Lands in Texas: Sequestering Carbon and Avoiding Methane Production

    NASA Astrophysics Data System (ADS)

    Kronrad, G. D.; Huang, C.

    2005-12-01

    Global climate change is predicted due to increases in greenhouse gasses (i.e. CO2, CH4, CFCs, N2O, O3) in the atmosphere caused by human activities. The atmospheric concentration of methane (CH4), which absorbs and retains heat 21 times more effectively than CO2, has increased. Anaerobic bacterial activity in rice paddies constitutes one of major emission sources of CH4. The rice fields of Texas, for example, accounted for an annual CH4 emission of between 1.1 and 1.6 million tons of CO2 equivalent between 1990 and 2000. Converting marginal rice fields to forests plantations will remove CO2 from the atmosphere, sequester carbon in the forests and prevent the production of CH4. Therefore, carbon credits can be claimed for the carbon sequestered and the avoidance of CH4 production. Analyses were conducted to calculate the amount of carbon sequestered and methane avoided, and the profitability, measured in net present worth (NPW), of managing loblolly pine plantation for 1) timber production only, 2) the dual products of timber products and carbon credits in forests planted on marginal agricultural and unused pastureland and 3) the dual products of timber and carbon storage in forests planted on marginal rice lands. Calculations were performed using three discount rates, three site qualities and five prices for carbon credits. The results indicate that on average quality land, using a discount rate of 8 percent, forests planted on marginal agricultural and unused pastureland earn a NPW of 346 per acre from timber production only; a NPW of 438 per acre from timber and carbon credits (54.4 tons of carbon sequestered), assuming carbon is worth 10 per ton, during one rotation (32 years). The profitability of forest management increases due to the inclusion of carbon credits. The profitability of planting forests on marginal rice fields is even higher, earning a NPW of 566 per acre from timber and carbon credits (54.4 tons of C sequestered and 33.3 tons of C emission

  4. Native and exotic plants of fragments of sagebrush steppe produced by geomorphic processes versus land use

    USGS Publications Warehouse

    Huntly, N.; Bangert, R.; Hanser, S.E.

    2011-01-01

    Habitat fragmentation and invasion by exotic species are regarded as major threats to the biodiversity of many ecosystems. We surveyed the plant communities of two types of remnant sagebrush-steppe fragments from nearby areas on the Snake River Plain of southeastern Idaho, USA. One type resulted from land use (conversion to dryland agriculture; hereafter AG Islands) and the other from geomorphic processes (Holocene volcanism; hereafter kipukas). We assessed two predictions for the variation in native plant species richness of these fragments, using structural equation models (SEM). First, we predicted that the species richness of native plants would follow the MacArthur-Wilson (M-W) hypothesis of island biogeography, as often is expected for the communities of habitat fragments. Second, we predicted a negative relationship between native and exotic plants, as would be expected if exotic plants are decreasing the diversity of native plants. Finally, we assessed whether exotic species were more strongly associated with the fragments embedded in the agricultural landscape, as would be expected if agriculture had facilitated the introduction and naturalization of non-native species, and whether the communities of the two types of fragments were distinct. Species richness of native plants was not strongly correlated with M-W characteristics for either the AG Islands or the **kipukas. The AG Islands had more species and higher cover of exotics than the kipukas, and exotic plants were good predictors of native plant species richness. Our results support the hypothesis that proximity to agriculture can increase the diversity and abundance of exotic plants in native habitat. In combination with other information, the results also suggest that agriculture and exotic species have caused loss of native diversity and reorganization of the sagebrush-steppe plant community. ?? 2011 Springer Science+Business Media B.V.

  5. Quality Assurance Project Plan for Closure of the Central Facilities Area Sewage Treatment Plant Lagoon 3 and Land Application Area

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lewis, Michael G.

    This quality assurance project plan describes the technical requirements and quality assurance activities of the environmental data collection/analyses operations to close Central Facilities Area Sewage treatment Plant Lagoon 3 and the land application area. It describes the organization and persons involved, the data quality objectives, the analytical procedures, and the specific quality control measures to be employed. All quality assurance project plan activities are implemented to determine whether the results of the sampling and monitoring performed are of the right type, quantity, and quality to satisfy the requirements for closing Lagoon 3 and the land application area.

  6. Nutrient availability and nutrient use efficiency in plants growing in the transition zone between land and water.

    PubMed

    Cavalli, G; Baattrup-Pedersen, A; Riis, T

    2016-03-01

    The transition zone between terrestrial and freshwater habitats is highly dynamic, with large variability in environmental characteristics. Here, we investigate how these characteristics influence the nutritional status and performance of plant life forms inhabiting this zone. Specifically, we hypothesised that: (i) tissue nutrient content differs among submerged, amphibious and terrestrial species, with higher content in submerged species; and (ii) PNUE gradually increases from submerged over amphibious to terrestrial species, reflecting differences in the availability of N and P relative to inorganic C across the land-water ecotone. We found that tissue nutrient content was generally higher in submerged species and C:N and C:P ratios indicated that content was limiting for growth for ca. 20% of plant individuals, particularly those belonging to amphibious and terrestrial species groups. As predicted, the PNUE increased from submerged over amphibious to terrestrial species. We suggest that this pattern reflects that amphibious and terrestrial species allocate proportionally more nutrients into processes of importance for photosynthesis at saturating CO2 availability, i.e. enzymes involved in substrate regeneration, compared to submerged species that are acclimated to lower availability of CO2 in the aquatic environment. Our results indicate that enhanced nutrient loading may affect relative abundance of the three species groups in the land-water ecotone of stream ecosystems. Thus, species of amphibious and terrestrial species groups are likely to benefit more from enhanced nutrient availability in terms of faster growth compared to aquatic species, and that this can be detrimental to aquatic species growing in the land-water ecotone, e.g. Ranunculus and Callitriche. © 2015 German Botanical Society and The Royal Botanical Society of the Netherlands.

  7. Efficiency of fluorescence and reflectance imaging as complementary tools for early warning of stress effects on plants

    NASA Astrophysics Data System (ADS)

    Krumov, A.; Nikolova, A.; Vassilev, N.; Vassilev, V.

    Monitoring of terrestrial vegetation for the needs of agriculture, forestry and scientific investigation has demonstrated significant contribution to Earth' sciences in general and particular in ecological surveys and disaster management. Remote sensing of specific vegetation signature by space-born instruments is the only technique allowing large scale (regional or global) repeated observation, which can be used for early warning of natural hazards. Nowadays reflectance spectra are the main optical signatures used for monitoring of plant biomes. However, such a spectrum provides only data primarily related to the total quantity of vegetation and the concentration of their constituents. In fact, changes in the reflectance signature appear only after serious damage of the bio-systems has occurred. Thus, the use of reflectance signal as an early indicator of stress factors is rather impossible. More recently, the interest of the scientific community is increasingly devoted to the vegetation fluorescence emission, known to be an intrinsic early indicator of plant photosynthetic activity. With respect to reflectance, fluorescence is more specific as an observable of the basic biophysical processes in the plant cells. Several projects dedicated to remote measurements of solar-induced plant fluorescence, have shown the feasibility the fluorescence signal to be remotely sensed from a satellite altitudes. However, the correlation between reflectance and fluorescence still needs to be investigated. This work presents a set of experiments aimed to investigate the link between reflectance and fluorescence emission under controlled illumination conditions. They were performed in a specially designed laboratory bio chamber. The hardware of the bio-chamber allows monitoring of the plants vitality both by fluorescence and reflectance spectral imaging. Different types of stress factors (water, drought stress, acid impact etc.) were investigated. The acquired fluorescence and

  8. Comparative analysis of the conceptual design studies of potential early commercial MHD power plants (CSPEC)

    NASA Technical Reports Server (NTRS)

    Sovie, R. J.; Winter, J. M.; Juhasz, A. J.; Berg, R. D.

    1982-01-01

    A conceptual design study of the MHD/steam plant that incorporates the use of oxygen enriched air preheated in a metallic heat exchanger as the combustor oxidant showed that this plant is the most attractive for early commercial applications. The variation of performance and cost was investigated as a function of plant size. The contractors' results for the overall efficiencies are in reasonable agreement considering the slight differences in their plant designs. NASA LeRC is reviewing cost and performance results for consistency with those of previous studies, including studies of conventional steam plants. LeRC in house efforts show that there are still many tradeoffs to be considered for these oxygen enriched plants and considerable variations can be made in channel length and level of oxygen enrichment with little change in overall plant efficiency.

  9. 7 CFR 1415.5 - Land eligibility.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... State Technical Committee, determines that it is compatible with grazing uses and related conservation values, and— (i) Could provide habitat for animal or plant populations of significant ecological value if... conservation priorities. (c) Incidental lands, in conjunction with eligible land, may also be considered for...

  10. 7 CFR 1415.5 - Land eligibility.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... State Technical Committee, determines that it is compatible with grazing uses and related conservation values, and (i) Could provide habitat for animal or plant populations of significant ecological value if... conservation priorities. (c) Incidental lands, in conjunction with eligible land, may also be considered for...

  11. 7 CFR 1415.5 - Land eligibility.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... State Technical Committee, determines that it is compatible with grazing uses and related conservation values, and (i) Could provide habitat for animal or plant populations of significant ecological value if... conservation priorities. (c) Incidental lands, in conjunction with eligible land, may also be considered for...

  12. 7 CFR 1415.5 - Land eligibility.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... State Technical Committee, determines that it is compatible with grazing uses and related conservation values, and (i) Could provide habitat for animal or plant populations of significant ecological value if... conservation priorities. (c) Incidental lands, in conjunction with eligible land, may also be considered for...

  13. 7 CFR 1415.5 - Land eligibility.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... State Technical Committee, determines that it is compatible with grazing uses and related conservation values, and (i) Could provide habitat for animal or plant populations of significant ecological value if... conservation priorities. (c) Incidental lands, in conjunction with eligible land, may also be considered for...

  14. 47 CFR 32.2111 - Land.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) COMMON CARRIER SERVICES UNIFORM SYSTEM OF ACCOUNTS FOR... of more than one year used for purposes other than the location of outside plant (see Accounts 2411..., Nonoperating Plant. (e) When land is acquired in excess of that required for telecommunications purposes, the...

  15. 47 CFR 32.2111 - Land.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) COMMON CARRIER SERVICES UNIFORM SYSTEM OF ACCOUNTS FOR... of more than one year used for purposes other than the location of outside plant (see Accounts 2411..., Nonoperating Plant. (e) When land is acquired in excess of that required for telecommunications purposes, the...

  16. Carbon Isotope Discrimination in C3 Land Plants is Independent of Atmospheric PCO2

    NASA Astrophysics Data System (ADS)

    Kohn, M. J.

    2015-12-01

    The δ13C of terrestrial C3 plant tissues and soil organic matter is important for understanding the carbon cycle, inferring past climatic and ecological conditions, and predicting responses of vegetation to future climate change. Plant δ13C depends on the δ13C of atmospheric CO2 and mean annual precipitation (MAP), but an unresolved decades-long debate centers on whether terrestrial C3 plant δ13C responds to pCO2. Here, the pCO2-dependence of C3 land plant δ13C was tested using isotopic records from low- and high-pCO2 times spanning historical through Eocene data. Historical data do not resolve a clear pCO2-effect (-1.2±1.0 to 0.59±0.34‰/100 ppmv), and organic carbon records of the Pleistocene-Holocene transition implicate changes in MAP and ecosystems, rather than pCO2, as the major driver of δ13C changes. Fossil collagen and tooth enamel data constrain pCO2-effects most tightly to -0.03±0.13 and -0.03±0.24‰/100 ppmv between 200 and 700 ppmv. Combining all constraints yields a preferred value of 0.0±0.2‰/100 ppmv (2 s.e.), i.e. there is effectively no pCO2 effect. Recent models of pCO2-dependence imply unrealistic MAP for Cenozoic records.

  17. Potential Carbon Negative Commercial Aviation through Land Management

    NASA Technical Reports Server (NTRS)

    Hendricks, Robert C.

    2008-01-01

    Brazilian terra preta soil and char-enhanced soil agricultural systems have demonstrated both enhanced plant biomass and crop yield and functions as a carbon sink. Similar carbon sinking has been demonstrated for both glycophyte and halophyte plants and plant roots. Within the assumption of 3.7 t-C/ha/yr soils and plant root carbon sinking, it is possible to provide carbon neutral U.S. commercial aviation using about 8.5% of U.S. arable lands. The total airline CO2 release would be offset by carbon credits for properly managed soils and plant rooting, becoming carbon neutral for carbon sequestered synjet processing. If these lands were also used to produce biomass fuel crops such as soybeans at an increased yield of 60 bu/acre (225gal/ha), they would provide over 3.15 10(exp 9) gallons biodiesel fuel. If all this fuel were refined into biojet it would provide a 16% biojet-84% synjet blend. This allows the U.S. aviation industry to become carbon negative (carbon negative commercial aviation through carbon credits). Arid land recovery could yield even greater benefits.

  18. The availability and economic analyses of using marginal land for bioenergy production in China

    NASA Astrophysics Data System (ADS)

    Yuqi, Chen; Xudong, Guo; Chunyan, Lv

    2017-04-01

    In recent years, China has witnessed rapid increase in the dependence of foreign oil import. In 2015, the primary energy consumption of China is 543 million tons, of which 328 million tons was imported. The total amount of imported foreign oil increased from 49.8% in 2008 to 60.41% in 2016. To address the national energy security and GHG emission reduction, China has made considerable progress in expanding renewable energy portfolio, especially liquid biofuels. However, under the pressure of high population and vulnerable food security, China's National Development and Reform Commission (NDRC) ruled that bioenergy is only allowed to be produced using non-cereal feedstock. In addition, the energy crops can only be planted on marginal land, which is the land not suitable for growing field crops due to edaphic and/or climatic limitations, and other environmental risks. Although there have been a number of studies about estimating the marginal land for energy plants' cultivation in China, as to the different definition of marginal land and land use data, the results are quite different. Furthermore, even if there is enough marginal land suitable for energy plants' cultivation, economic viability of cultivating energy plants on marginal land is critical. In order to analyze the availability and economic analyses of the marginal land for bioenergy production strategy, firstly, by using of the latest and most authoritative land use data, this study focused on the assessment of marginal land resources and bioenergy potential by planting five species of energy plants including Cassava, Jatropha curcas, Helianthus tuberous L, Pistacia chinensis, Xanthoceras sorbifolia Bunge. The results indicate that there are 289.71 million ha marginal land can be used for these five energy plants' cultivation, which can produce 24.45 million tons bioethanol and 8.77 million tons of biodiesel. Secondly, based on field survey data and literature reviews, we found that, from the farmers

  19. Lithological and land-use based assessment of heavy metal pollution in soils surrounding a cement plant in SW Europe.

    PubMed

    Cutillas-Barreiro, Laura; Pérez-Rodríguez, Paula; Gómez-Armesto, Antía; Fernández-Sanjurjo, María José; Álvarez-Rodríguez, Esperanza; Núñez-Delgado, Avelino; Arias-Estévez, Manuel; Nóvoa-Muñoz, Juan Carlos

    2016-08-15

    We study the influence of phasing out a cement plant on the heavy metal (Hg, Pb and Cr) content in the surrounding soils, taking into account factors often neglected, such as contributions due to local lithology or land use. The range of total Hg was 10-144µg kg(-1), reaching up to 41 and 145mgkg(-1) for total contents of Pb and Cr, respectively. Forest soils showed higher concentration of Hg than prairie soils, indicating the importance of land use on the accumulation of volatile heavy metals in soils. In forest soils, total Hg showed a trend to decrease with soil depth, whereas in prairie soils the vertical pattern of heavy metal concentrations was quite homogeneous. In most cases, the distance to the cement plant was not a factor of influence in the soils content of the analyzed heavy metals. Total Pb and Cr contents in soils nearby the cement plant were quite similar to those found in the local lithology, resulting in enrichment factor values (EF's) below 2. This suggests that soil parent material is the main source of these heavy metals in the studied soils, while the contribution of the cement plant to Pb and Cr soil pollution was almost negligible. On the contrary, the soils surrounding the cement plant accumulate a significant amount of Hg, compared to the underlying lithology. This was especially noticeable in forest soils, where Hg EF achieved values up to 36. These results are of relevance, bearing in mind that Hg accumulation in soils may be an issue of environmental concern, particularly in prairie soils, where temporal flooding can favor Hg transformation to highly toxic methyl-Hg. In addition, the concurrence of acid soils and total-Cr concentrations in the range of those considered phytotoxic should be also stressed. Copyright © 2016 Elsevier B.V. All rights reserved.

  20. Root Secreted Metabolites and Proteins Are Involved in the Early Events of Plant-Plant Recognition Prior to Competition

    PubMed Central

    Badri, Dayakar V.; De-la-Peña, Clelia; Lei, Zhentian; Manter, Daniel K.; Chaparro, Jacqueline M.; Guimarães, Rejane L.; Sumner, Lloyd W.; Vivanco, Jorge M.

    2012-01-01

    The mechanism whereby organisms interact and differentiate between others has been at the forefront of scientific inquiry, particularly in humans and certain animals. It is widely accepted that plants also interact, but the degree of this interaction has been constricted to competition for space, nutrients, water and light. Here, we analyzed the root secreted metabolites and proteins involved in early plant neighbor recognition by using Arabidopsis thaliana Col-0 ecotype (Col) as our focal plant co-cultured in vitro with different neighbors [A. thaliana Ler ecotype (Ler) or Capsella rubella (Cap)]. Principal component and cluster analyses revealed that both root secreted secondary metabolites and proteins clustered separately between the plants grown individually (Col-0, Ler and Cap grown alone) and the plants co-cultured with two homozygous individuals (Col-Col, Ler-Ler and Cap-Cap) or with different individuals (Col-Ler and Col-Cap). In particularly, we observed that a greater number of defense- and stress- related proteins were secreted when our control plant, Col, was grown alone as compared to when it was co-cultured with another homozygous individual (Col-Col) or with a different individual (Col-Ler and Col-Cap). However, the total amount of defense proteins in the exudates of the co-cultures was higher than in the plant alone. The opposite pattern of expression was identified for stress-related proteins. These data suggest that plants can sense and respond to the presence of different plant neighbors and that the level of relatedness is perceived upon initial interaction. Furthermore, the role of secondary metabolites and defense- and stress-related proteins widely involved in plant-microbe associations and abiotic responses warrants reassessment for plant-plant interactions. PMID:23056382

  1. Evolution of allosteric regulation in chorismate mutases from early plants

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kroll, Kourtney; Holland, Cynthia K.; Starks, Courtney M.

    Plants, fungi, and bacteria synthesize the aromatic amino acids: l-phenylalanine, l-tyrosine, and l-tryptophan. Chorismate mutase catalyzes the branch point reaction of phenylalanine and tyrosine biosynthesis to generate prephenate. In Arabidopsis thaliana, there are two plastid-localized chorismate mutases that are allosterically regulated (AtCM1 and AtCM3) and one cytosolic isoform (AtCM2) that is unregulated. Previous analysis of plant chorismate mutases suggested that the enzymes from early plants (i.e. bryophytes/moss, lycophytes, and basal angiosperms) formed a clade distinct from the isoforms found in flowering plants; however, no biochemical information on these enzymes is available. To understand the evolution of allosteric regulation in plantmore » chorismate mutases, we analyzed a basal lineage of plant enzymes homologous to AtCM1 based on sequence similarity. The chorismate mutases from the moss/bryophyte Physcomitrella patens (PpCM1 and PpCM2), the lycophyte Selaginella moellendorffii (SmCM), and the basal angiosperm Amborella trichopoda (AmtCM1 and AmtCM2) were characterized biochemically. Tryptophan was a positive effector for each of the five enzymes examined. Histidine was a weak positive effector for PpCM1 and AmtCM1. Neither tyrosine nor phenylalanine altered the activity of SmCM; however, tyrosine was a negative regulator of the other four enzymes. Phenylalanine down-regulates both moss enzymes and AmtCM2. The 2.0 Å X-ray crystal structure of PpCM1 in complex with the tryptophan identified the allosteric effector site and reveals structural differences between the R- (more active) and T-state (less active) forms of plant chorismate mutases. Molecular insight into the basal plant chorismate mutases guides our understanding of the evolution of allosteric regulation in these enzymes.« less

  2. SPECIES COMPOSITION, DISTRIBUTION, LIFE FORMS AND FOLK NOMENCLATURE OF FOREST AND COMMON LAND PLANTS OF WESTERN CHITWAN, NEPAL

    PubMed Central

    Dangol, D. R.

    2012-01-01

    This paper enumerates 349 plant species belonging to 77 families of vascular plants collected in the winter seasons of 1996 and 2000 by the flora teams of the Population and Ecology Research Laboratory, Nepal. Of the total species, 249 species belong to dicotyledons, 87 species to monocotyledons and 13 species to pteridophytes. Among the families, dicotyledons contributed the highest number of families (55 in number) followed by monocotyledons and pteridophytes. In the study areas, species composition varies with the type of habitats in the study plots. Some species are unique in distribution. The highest unique species are contributed by common lands (87 spp.), followed by the Chitwan National Park forest (36 spp.) and Tikauli forest (32 spp.). Ageratum houstonianum Mill., Cynodon dactylon (L.) Pers., Imperata cylindrica (L.) Beauv., Rungia parviflora (Retz.) Nees, Saccharum spontaneum L. and Thelypteris auriculata (J. Sm.) K. Iwats are the most common species across all the research blocks. Of the listed plants, many plants have local names either in Nepalese or other tribal languages. Plants are named in different ways on the basis of habit, habitat, smell, taste, and morphological characters of the plants, which are also the basis of nomenclature in plant taxonomy. PMID:22962539

  3. SafeLand guidelines for landslide monitoring and early warning systems in Europe - Design and required technology

    NASA Astrophysics Data System (ADS)

    Bazin, S.

    2012-04-01

    Landslide monitoring means the comparison of landslide characteristics like areal extent, speed of movement, surface topography and soil humidity from different periods in order to assess landslide activity. An ultimate "universal" methodology for this purpose does not exist; every technology has its own advantages and disadvantages. End-users should carefully consider each one to select the methodologies that represent the best compromise between pros and cons, and are best suited for their needs. Besides monitoring technology, there are many factors governing the choice of an Early Warning System (EWS). A people-centred EWS necessarily comprises five key elements: (1) knowledge of the risks; (2) identification, monitoring, analysis and forecasting of the hazards; (3) operational centre; (4) communication or dissemination of alerts and warnings; and (5) local capabilities to respond to the warnings received. The expression "end-to-end warning system" is also used to emphasize that EWSs need to span all steps from hazard detection through to community response. The aim of the present work is to provide guidelines for establishing the different components for landslide EWSs. One of the main deliverables of the EC-FP7 SafeLand project addresses the technical and practical issues related to monitoring and early warning for landslides, and identifies the best technologies available in the context of both hazard assessment and design of EWSs. This deliverable targets the end-users and aims to facilitate the decision process by providing guidelines. For the purpose of sharing the globally accumulated expertise, a screening study was done on 14 EWSs from 8 different countries. On these bases, the report presents a synoptic view of existing monitoring methodologies and early-warning strategies and their applicability for different landslide types, scales and risk management steps. Several comprehensive checklists and toolboxes are also included to support informed

  4. Gross and net land cover changes in the main plant functional types derived from the annual ESA CCI land cover maps (1992-2015)

    NASA Astrophysics Data System (ADS)

    Li, Wei; MacBean, Natasha; Ciais, Philippe; Defourny, Pierre; Lamarche, Céline; Bontemps, Sophie; Houghton, Richard A.; Peng, Shushi

    2018-01-01

    Land-use and land-cover change (LULCC) impacts local energy and water balance and contributes on global scale to a net carbon emission to the atmosphere. The newly released annual ESA CCI (climate change initiative) land cover maps provide continuous land cover changes at 300 m resolution from 1992 to 2015, and can be used in land surface models (LSMs) to simulate LULCC effects on carbon stocks and on surface energy budgets. Here we investigate the absolute areas and gross and net changes in different plant functional types (PFTs) derived from ESA CCI products. The results are compared with other datasets. Global areas of forest, cropland and grassland PFTs from ESA are 30.4, 19.3 and 35.7 million km2 in the year 2000. The global forest area is lower than that from LUH2v2h (Hurtt et al., 2011), Hansen et al. (2013) or Houghton and Nassikas (2017) while cropland area is higher than LUH2v2h (Hurtt et al., 2011), in which cropland area is from HYDE 3.2 (Klein Goldewijk et al., 2016). Gross forest loss and gain during 1992-2015 are 1.5 and 0.9 million km2 respectively, resulting in a net forest loss of 0.6 million km2, mainly occurring in South and Central America. The magnitudes of gross changes in forest, cropland and grassland PFTs in the ESA CCI are smaller than those in other datasets. The magnitude of global net cropland gain for the whole period is consistent with HYDE 3.2 (Klein Goldewijk et al., 2016), but most of the increases happened before 2004 in ESA and after 2007 in HYDE 3.2. Brazil, Bolivia and Indonesia are the countries with the largest net forest loss from 1992 to 2015, and the decreased areas are generally consistent with those from Hansen et al. (2013) based on Landsat 30 m resolution images. Despite discrepancies compared to other datasets, and uncertainties in converting into PFTs, the new ESA CCI products provide the first detailed long-term time series of land-cover change and can be implemented in LSMs to characterize recent carbon dynamics

  5. Plasma membrane potential depolarization and cytosolic calcium flux are early events involved in tomato (Solanum lycopersicon) plant-to-plant communication.

    PubMed

    Zebelo, Simon A; Matsui, Kenji; Ozawa, Rika; Maffei, Massimo E

    2012-11-01

    Tomato plants respond to herbivory by emitting volatile organic compounds (VOCs), which are released into the surrounding atmosphere. We analyzed the tomato herbivore-induced VOCs and tested the ability of tomato receiver plants to detect tomato donor volatiles by analyzing early responses, including plasma membrane potential (V(m)) variations and cytosolic calcium ([Ca²⁺](cyt)) fluxes. Receiver tomato plants responded within seconds to herbivore-induced VOCs with a strong V(m) depolarization, which was only partly recovered by fluxing receiver plants with clean air. Among emitted volatiles, we identified by GC-MS some green leaf volatiles (GLVs) such as (E)-2-hexenal, (Z)-3-hexenal, (Z)-3-hexenyl acetate, the monoterpene α-pinene, and the sesquiterpene β-caryophyllene. GLVs were found to exert the stronger V(m) depolarization, when compared to α-pinene and β-caryophyllene. Furthermore, V(m) depolarization was found to increase with increasing GLVs concentration. GLVs were also found to induce a strong [Ca²⁺](cyt) increase, particularly when (Z)-3-hexenyl acetate was tested both in solution and with a gas. On the other hand, α-pinene and β-caryophyllene, which also induced a significant V(m) depolarization with respect to controls, did not exert any significant effect on [Ca²⁺](cyt) homeostasis. Our results show for the first time that plant perception of volatile cues (especially GLVs) from the surrounding environment is mediated by early events, occurring within seconds and involving the alteration of the plasma membrane potential and the [Ca²⁺](cyt) flux. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  6. Land use/land cover change and implications for ecosystems services in the Likangala River Catchment, Malawi

    NASA Astrophysics Data System (ADS)

    Pullanikkatil, Deepa; Palamuleni, Lobina G.; Ruhiiga, Tabukeli M.

    2016-06-01

    Likangala River catchment in Zomba District of Southern Malawi is important for water resources, agriculture and provides many ecosystem services. Provisioning ecosystem services accrued by the populations within the catchment include water, fish, medicinal plants and timber among others. In spite of its importance, the River catchment is under threat from anthropogenic activities and land use change. This paper studies land uses and land cover change in the catchment and how the changes have impacted on the ecosystem services. Landsat 5 and 8 images (1984, 1994, 2005 and 2013) were used to map land cover change and subsequent inventorying of provisioning ecosystem services. Participatory Geographic Information Systems and Focus group discussions were conducted to identify provisioning ecosystems services that communities benefit from the catchment and indicate these on the map. Post classification comparisons indicate that since 1984, there has been a decline in woodlands from 135.3 km2 in 1984 to 15.5 km2 in 2013 while urban areas increased from 9.8 km2 to 23.8 km2 in 2013. Communities indicated that provisioning ecosystems services such as forest products, wild animals and fruits and medicinal plants have been declining over the years. In addition, evidence of catchment degradation through waste disposal, illegal sand mining, deforestation and farming on marginal lands were observed. Population growth, urbanization and demand for agricultural lands have contributed to this land use and land cover change. The study suggests addressing catchment degradation through integrated method where an ecosystems approach is used. Thus, both the proximate and underlying driving factors of land-use and land cover change need to be addressed in order to sustainably reduce ecosystem degradation.

  7. Origin, evolution, and divergence of plant class C GH9 endoglucanases.

    PubMed

    Kundu, Siddhartha; Sharma, Rita

    2018-05-30

    Glycoside hydrolases of the GH9 family encode cellulases that predominantly function as endoglucanases and have wide applications in the food, paper, pharmaceutical, and biofuel industries. The partitioning of plant GH9 endoglucanases, into classes A, B, and C, is based on the differential presence of transmembrane, signal peptide, and the carbohydrate binding module (CBM49). There is considerable debate on the distribution and the functions of these enzymes which may vary in different organisms. In light of these findings we examined the origin, emergence, and subsequent divergence of plant GH9 endoglucanases, with an emphasis on elucidating the role of CBM49 in the digestion of crystalline cellulose by class C members. Since, the digestion of crystalline cellulose mandates the presence of a well-defined set of aromatic and polar amino acids and/or an attributable domain that can mediate this conversion, we hypothesize a vertical mode of transfer of genes that could favour the emergence of class C like GH9 endoglucanase activity in land plants from potentially ancestral non plant taxa. We demonstrated the concomitant occurrence of a GH9 domain with CBM49 and other homologous carbohydrate binding modules, in putative endoglucanase sequences from several non-plant taxa. In the absence of comparable full length CBMs, we have characterized several low strength patterns that could approximate the CBM49, thereby, extending support for digestion of crystalline cellulose to other segments of the protein. We also provide data suggestive of the ancestral role of putative class C GH9 endoglucanases in land plants, which includes detailed phylogenetics and the presence and subsequent loss of CBM49, transmembrane, and signal peptide regions in certain populations of early land plants. These findings suggest that classes A and B of modern vascular land plants may have emerged by diverging directly from CBM49 encompassing putative class C enzymes. Our detailed phylogenetic and

  8. Early brush control promotes growth of ponderosa pine planted on bulldozed site

    Treesearch

    Jay R. Bentley; Stanley B. Carpenter; David A. Blakeman

    1971-01-01

    Test plots in a brushfield near Mount Shasta, California, were cleared by bulldozing in 1961, and planted with ponderosa pine seedlings in 1962. Brush regrowth was subjected to varying levels of control by spraying with herbicides. In the first 5 years, brush control definitely promoted the growth of pine seedlings. And this early control also promises to reduce the...

  9. Land-use legacies and present fire regimes interact to mediate herbivory by altering the neighboring plant community

    DOE PAGES

    Hahn, Philip G.; Orrock, John L.

    2014-10-03

    Past and present human activities, such as historic agriculture and fire suppression, are widespread and can create depauperate plant communities. Although many studies show that herbivory on focal plants depends on the density of herbivores or the composition of the surrounding plant community, it is unclear whether anthropogenic changes to plant communities alter herbivory. We tested the hypothesis that human activities that alter the plant community lead to subsequent changes in herbivory. At 20 sites distributed across 80 300 hectares, we conducted a field experiment that manipulated insect herbivore access (full exclosures and pseudo-exclosures) to four focal plant species inmore » longleaf pine woodlands with diff erent land-use histories (post-agricultural sites or non-agricultural sites) and degrees of fi re frequency (frequent and infrequent). Plant cover, particularly herbaceous cover, was lower in post-agricultural and fi re suppressed woodlands. Density of the dominant insect herbivore at our site (grasshoppers) was positively related to plant cover. Herbivore access reduced biomass of the palatable forb Solidago odora in frequently burned post-agricultural sites and in infrequently burned non-agricultural woodlands and increased mortality of another forb (Pityopsis graminifolia ), but did not aff ect two other less palatable species ( Schizachyrium scoparium and Tephrosia virginiana ). Herbivory on S. odora exhibited a hump-shaped response to plant cover, with low herbivory at low and high levels of plant cover. Herbivore density had a weak negative effect on herbivory. These findings suggest that changes in plant cover related to past and present human activities can modify damage rates on focal S. odora plants by altering grasshopper foraging behavior rather than by altering local grasshopper density. The resulting changes in herbivory may have the potential to limit natural recovery or restoration eff orts by reducing the establishment or

  10. Land-use legacies and present fire regimes interact to mediate herbivory by altering the neighboring plant community

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hahn, Philip G.; Orrock, John L.

    Past and present human activities, such as historic agriculture and fire suppression, are widespread and can create depauperate plant communities. Although many studies show that herbivory on focal plants depends on the density of herbivores or the composition of the surrounding plant community, it is unclear whether anthropogenic changes to plant communities alter herbivory. We tested the hypothesis that human activities that alter the plant community lead to subsequent changes in herbivory. At 20 sites distributed across 80 300 hectares, we conducted a field experiment that manipulated insect herbivore access (full exclosures and pseudo-exclosures) to four focal plant species inmore » longleaf pine woodlands with diff erent land-use histories (post-agricultural sites or non-agricultural sites) and degrees of fi re frequency (frequent and infrequent). Plant cover, particularly herbaceous cover, was lower in post-agricultural and fi re suppressed woodlands. Density of the dominant insect herbivore at our site (grasshoppers) was positively related to plant cover. Herbivore access reduced biomass of the palatable forb Solidago odora in frequently burned post-agricultural sites and in infrequently burned non-agricultural woodlands and increased mortality of another forb (Pityopsis graminifolia ), but did not aff ect two other less palatable species ( Schizachyrium scoparium and Tephrosia virginiana ). Herbivory on S. odora exhibited a hump-shaped response to plant cover, with low herbivory at low and high levels of plant cover. Herbivore density had a weak negative effect on herbivory. These findings suggest that changes in plant cover related to past and present human activities can modify damage rates on focal S. odora plants by altering grasshopper foraging behavior rather than by altering local grasshopper density. The resulting changes in herbivory may have the potential to limit natural recovery or restoration eff orts by reducing the establishment or

  11. Enhanced Historical Land-Use and Land-Cover Data Sets of the U.S. Geological Survey

    USGS Publications Warehouse

    Price, Curtis V.; Nakagaki, Naomi; Hitt, Kerie J.; Clawges, Rick M.

    2007-01-01

    Historical land-use and land-cover data, available from the U.S. Geological Survey (USGS) for the conterminous United States and Hawaii, have been enhanced for use in geographic information systems (GIS) applications. The original digital data sets were created by the USGS in the late 1970s and early 1980s and were later converted by USGS and the U.S. Environmental Protection Agency (USEPA) to a geographic information system (GIS) format in the early 1990s. These data were made available on USEPA's Web site since the early 1990s and have been used for many national applications, despite minor coding and topological errors. During the 1990s, a group of USGS researchers made modifications to the data set for use in the National Water-Quality Assessment Program. These edited files have been further modified to create a more accurate, topologically clean, and seamless national data set. Several different methods, including custom editing software and several batch processes, were applied to create this enhanced version of the national data set. The data sets are included in this report in the commonly used shapefile and Tagged Image Format File (TIFF) formats. In addition, this report includes two polygon data sets (in shapefile format) representing (1) land-use and land-cover source documentation extracted from the previously published USGS data files, and (2) the extent of each polygon data file.

  12. Projecting large-scale area changes in land use and land cover for terrestrial carbon analyses.

    Treesearch

    Ralph J. Alig; Brett J. Butler

    2004-01-01

    One of the largest changes in US forest type areas over the last half-century has involved pine types in the South. The area of planted pine has increased more than 10-fold since 1950, mostly on private lands. Private landowners have responded to market incentives and government programs, including subsidized afforestation on marginal agricultural land. Timber harvest...

  13. Tamarisk control on public lands in the desert of southern California: two case studies

    USGS Publications Warehouse

    1994-01-01

    As a land manager, the Federal Government faces enormous challenges from exotic pest invasions and associated changes to the structure and stability of native ecosystems (Bureau of Land Management, 1988). On public lands administered by the Bureau of Land Management (BLM) alone, it is estimated that almost three million hectares are occupied by invasive exotic plant species (weeds). Assuming an annual rate of invasion of 14 percent, 930 hectares of BLM-administered land are infested everyday by weeds (Jerry Asher, personal communication). When one considers the fact that BLM administers only about one-third of the public land in the United States (The Keystone Center, 1991), the magnitude of the problem assumes staggering proportions. The scenario described in the quote above portrays only some of the problems associated with the spread of the exotic plant tamarisk, a species on the California Exotic Pest Plant Council’s list of exotic pest plants of greatest concern (California Exotic Pest Plant Council, 1993). In this paper we review the threats posed by tamarisk invasion and proliferation and examine the traits that make the plant such a successful competitor. In addition, we highlight two tamarisk control efforts conducted by the Bureau of Land Management in the southern California desert.

  14. Ontogenetic shifts in plant-plant interactions in a rare cycad within angiosperm communities.

    PubMed

    Álvarez-Yépiz, Juan C; Búrquez, Alberto; Dovčiak, Martin

    2014-06-01

    Gymnosperms and angiosperms can co-occur within the same habitats but key plant traits are thought to give angiosperms an evolutionary competitive advantage in many ecological settings. We studied ontogenetic changes in competitive and facilitative interactions between a rare gymnosperm (Dioon sonorense, our target species) and different plant and abiotic neighbours (conspecific-cycads, heterospecific-angiosperms, or abiotic-rocks) from 2007 to 2010 in an arid environment of northwestern Mexico. We monitored survival and growth of seedlings, juveniles, and adults of the cycad Dioon sonorense to evaluate how cycad survival and relative height growth rate (RHGR) responded to intra- and interspecific competition, canopy openness, and nearest neighbour. We tested spatial associations among D. sonorense life stages and angiosperm species and measured ontogenetic shifts in cycad shade tolerance. Canopy openness decreased cycad survival while intraspecific competition decreased survival and RHGR during early ontogeny. Seedling survival was higher in association with rocks and heterospecific neighbours where intraspecific competition was lower. Shade tolerance decreased with cycad ontogeny reflecting the spatial association of advanced stages with more open canopies. Interspecific facilitation during early ontogeny of our target species may promote its persistence in spite of increasing interspecific competition in later stages. We provide empirical support to the long-standing assumption that marginal rocky habitats serve as refugia from angiosperm competition for slow-growing gymnosperms such as cycads. The lack of knowledge of plant-plant interactions in rare or endangered species may hinder developing efficient conservation strategies (e.g. managing for sustained canopy cover), especially under the ongoing land use and climatic changes.

  15. A Study of Insect Pollinators Associated with DoD TER-S Flowering Plants, Including Identification of Habitat Types Where They Co-Occur by Military Installation in the Western United States

    DTIC Science & Technology

    2010-04-01

    environmental stewardship division chiefs can interact with contractors and partner land managers and biologists with plant and pollinator information in hand...1979. Pollination of Southwestern Opuntias. Plant Systematics and Evolution 133: 15-28. Keywords: Opuntia sp. Agapostemon angelicus...Parrish, J.A.D and F.A. Bazzaz. 1979. Difference in pollination niche relationships in early and late successional plant communities. Ecology 60

  16. Germination, survival, and early growth of three invasive plants in response to five forest management regimes common to US northeastern deciduous forests

    Treesearch

    Cynthia D. Huebner; Adam E. Regula; David W. McGill

    2018-01-01

    The association between invasive plants and disturbance is well-documented. Most forest management regimes include disturbance (i.e., harvesting and fire) to improve regeneration of native plants, such as oaks. There is a need for land managers of northeastern forests to foster regeneration of native species without promoting invasive species establishment. We...

  17. Three year field test of a plant growth promoting rhizobacteria enhanced phytoremediation system at a land farm for treatment of hydrocarbon waste.

    PubMed

    Gurska, Jolanta; Wang, Wenxi; Gerhardt, Karen E; Khalid, Aaron M; Isherwood, David M; Huang, Xiao-Dong; Glick, Bernard R; Greenberg, Bruce M

    2009-06-15

    Phytoremediation of total petroleum hydrocarbons (TPH) has the potential to be a sustainable waste management technology if it can be proven to be effective in the field. Over the past decade, our laboratory has developed a system which utilizes plant growth promoting rhizobacteria (PGPR) enhanced phytoremediation (PEP) that, following extensive greenhouse testing, was shown to be effective at remediating TPH from soils. This system consists of physical soil manipulation and plant growth following seed inoculation with PGPR. PGPR elicit biomass increases, particularly in roots, by minimizing plant stress in highly contaminated soils. Extensive development of the root system enhances degradation of contaminants by the plants and supports an active rhizosphere that effectively promotes TPH degradation by a broad microbial consortium. Following promising greenhouse trials, field tests of PEP were performed over a period of three years at a Southern Ontario site (approximately 130 g kg(-1) TPH) used for land farming of refinery hydrocarbon waste for many years. The low molecular weight fractions (the Canadian Council of Ministers of the Environment (CCME) fractions 1 and 2) were removed through land farming and bioremediation; the high molecular weight, recalcitrant fractions (CCME fractions 3 and 4) remained at high levels in the soil. Using PEP, we substantially remediated fractions 3 and 4, and lowered TPH from 130 g kg(-1) to approximately 50 g kg(-1) over a three year period. The amount of plant growth and extent of oil remediation were consistently enhanced by PGPR.

  18. Environment Quality: Impact From Traffic, Power Plant and Land Morphology, a Case Study of Prishtina

    NASA Astrophysics Data System (ADS)

    Bajcinovci, Bujar

    2017-05-01

    Environmental air pollution is a global health concern, a complex phenomenon which is directly reflected on public health, economic and human development. Environmental air pollution has been drastically multiplied, followed by the beginning of the new Millennia in Prishtina, the capital city of the Kosovo. The new millennium began as a crucial activity for the city of Prishtina in terms of demographic, human geography, social and economic phenomena. The presented study aims to determine prevalent traffic and land morphology composition attributes, which have influenced and continue to have environmental impact in the city of Prishtina. According to the conceptual findings from the empirical observations, the heavy city traffic and the land morphology structure, determine the urban air pollution level. Prishtina is generally polluted due to its geomorphic position in relation to the power plants Kosovo A, and Kosova B. The impact of the above cited factors, is even bigger when the dominant winds prevail through valley, which encompasses the city. The findings from this paper propose the necessity of careful driven urban solutions.

  19. Plant macrofossil evidence for an early onset of the Holocene summer thermal maximum in northernmost Europe

    PubMed Central

    Väliranta, M.; Salonen, J. S.; Heikkilä, M.; Amon, L.; Helmens, K.; Klimaschewski, A.; Kuhry, P.; Kultti, S.; Poska, A.; Shala, S.; Veski, S.; Birks, H. H.

    2015-01-01

    Holocene summer temperature reconstructions from northern Europe based on sedimentary pollen records suggest an onset of peak summer warmth around 9,000 years ago. However, pollen-based temperature reconstructions are largely driven by changes in the proportions of tree taxa, and thus the early-Holocene warming signal may be delayed due to the geographical disequilibrium between climate and tree populations. Here we show that quantitative summer-temperature estimates in northern Europe based on macrofossils of aquatic plants are in many cases ca. 2 °C warmer in the early Holocene (11,700–7,500 years ago) than reconstructions based on pollen data. When the lag in potential tree establishment becomes imperceptible in the mid-Holocene (7,500 years ago), the reconstructed temperatures converge at all study sites. We demonstrate that aquatic plant macrofossil records can provide additional and informative insights into early-Holocene temperature evolution in northernmost Europe and suggest further validation of early post-glacial climate development based on multi-proxy data syntheses. PMID:25858780

  20. Nutrient cycle benchmarks for earth system land model

    NASA Astrophysics Data System (ADS)

    Zhu, Q.; Riley, W. J.; Tang, J.; Zhao, L.

    2017-12-01

    Projecting future biosphere-climate feedbacks using Earth system models (ESMs) relies heavily on robust modeling of land surface carbon dynamics. More importantly, soil nutrient (particularly, nitrogen (N) and phosphorus (P)) dynamics strongly modulate carbon dynamics, such as plant sequestration of atmospheric CO2. Prevailing ESM land models all consider nitrogen as a potentially limiting nutrient, and several consider phosphorus. However, including nutrient cycle processes in ESM land models potentially introduces large uncertainties that could be identified and addressed by improved observational constraints. We describe the development of two nutrient cycle benchmarks for ESM land models: (1) nutrient partitioning between plants and soil microbes inferred from 15N and 33P tracers studies and (2) nutrient limitation effects on carbon cycle informed by long-term fertilization experiments. We used these benchmarks to evaluate critical hypotheses regarding nutrient cycling and their representation in ESMs. We found that a mechanistic representation of plant-microbe nutrient competition based on relevant functional traits best reproduced observed plant-microbe nutrient partitioning. We also found that for multiple-nutrient models (i.e., N and P), application of Liebig's law of the minimum is often inaccurate. Rather, the Multiple Nutrient Limitation (MNL) concept better reproduces observed carbon-nutrient interactions.

  1. Fire management, managed relocation, and land conservation options for long-lived obligate seeding plants under global changes in climate, urbanization, and fire regime.

    PubMed

    Bonebrake, Timothy C; Syphard, Alexandra D; Franklin, Janet; Anderson, Kurt E; Akçakaya, H Resit; Mizerek, Toni; Winchell, Clark; Regan, Helen M

    2014-08-01

    Most species face multiple anthropogenic disruptions. Few studies have quantified the cumulative influence of multiple threats on species of conservation concern, and far fewer have quantified the potential relative value of multiple conservation interventions in light of these threats. We linked spatial distribution and population viability models to explore conservation interventions under projected climate change, urbanization, and changes in fire regime on a long-lived obligate seeding plant species sensitive to high fire frequencies, a dominant plant functional type in many fire-prone ecosystems, including the biodiversity hotspots of Mediterranean-type ecosystems. First, we investigated the relative risk of population decline for plant populations in landscapes with and without land protection under an existing habitat conservation plan. Second, we modeled the effectiveness of relocating both seedlings and seeds from a large patch with predicted declines in habitat area to 2 unoccupied recipient patches with increasing habitat area under 2 projected climate change scenarios. Finally, we modeled 8 fire return intervals (FRIs) approximating the outcomes of different management strategies that effectively control fire frequency. Invariably, long-lived obligate seeding populations remained viable only when FRIs were maintained at or above a minimum level. Land conservation and seedling relocation efforts lessened the impact of climate change and land-use change on obligate seeding populations to differing degrees depending on the climate change scenario, but neither of these efforts was as generally effective as frequent translocation of seeds. While none of the modeled strategies fully compensated for the effects of land-use and climate change, an integrative approach managing multiple threats may diminish population declines for species in complex landscapes. Conservation plans designed to mitigate the impacts of a single threat are likely to fail if additional

  2. Recent developments in the reclamation of surface mined lands

    USGS Publications Warehouse

    Sharma, K.D.; Gough, L.P.; Kumar, S.; Sharma, B.K.; Saxena, S.K.

    1997-01-01

    A broad review of mine land reclamation problems and challenges in arid lands is presented with special emphasis on work recently completed in India. The economics of mining in the Indian Desert is second only to agriculture in importance. Lands disturbed by mining, however, have only recently been the focus of reclamation attempts. Studies were made and results compiled of problems associated with germplasm selection, soil, plant and overburden characterization and manipulation, plant establishment methods utilized, soil amendment needs, use and conservation of available water and the evaluation of ecosystem sustainability. Emphasis is made of the need for multi-disciplinary approaches to mine land reclamation research and for the long-term monitoring of reclamation success.

  3. Plant Succession at the Edges of Two Abandoned Cultivated Fields on the Arid Lands Ecology Reserve

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Simmons, Sally A.; Rickard, William H.

    How vegetation recovers from disturbances is an important question for land managers. We examined 500 m2 plots to determine the progress made by native herbaceous plant species in colonizing the edges of abandoned cultivated fields at different elevations and microclimates, but with similar soils in a big sagebrush/bluebunch wheatgrass steppe. Alien species, especially cheatgrass and cereal rye, were the major competitors to the natives. The native species with best potential for restoring steppe habitats were sulphur lupine, hawksbeard, bottlebrush squirreltail, needle-and-thread grass, Sandberg's bluegrass, and several lomatiums.

  4. Estimating plant biomass in early-successional subtropical vegetation using a visual obstruction technique

    Treesearch

    Genie M. Fleming; Joseph M. Wunderle; David N. Ewert; Joseph O' Brien

    2014-01-01

    Aim: Non-destructive methods for quantifying above-ground plant biomass are important tools in many ecological studies and management endeavours, but estimation methods can be labour intensive and particularly difficult in structurally diverse vegetation types. We aimed to develop a low-cost, but reasonably accurate, estimation technique within early-successional...

  5. Using Flux Site Observations to Calibrate Root System Architecture Stencils for Water Uptake of Plant Functional Types in Land Surface Models.

    NASA Astrophysics Data System (ADS)

    Bouda, M.

    2017-12-01

    Root system architecture (RSA) can significantly affect plant access to water, total transpiration, as well as its partitioning by soil depth, with implications for surface heat, water, and carbon budgets. Despite recent advances in land surface model (LSM) descriptions of plant hydraulics, RSA has not been included because of its three-dimensional complexity, which makes RSA modelling generally too computationally costly. This work builds upon the recently introduced "RSA stencil," a process-based 1D layered model that captures the dynamic shifts in water potential gradients of 3D RSA in response to heterogeneous soil moisture profiles. In validations using root systems calibrated to the rooting profiles of four plant functional types (PFT) of the Community Land Model, the RSA stencil predicts plant water potentials within 2% of the outputs of full 3D models, despite its trivial computational cost. In transient simulations, the RSA stencil yields improved predictions of water uptake and soil moisture profiles compared to a 1D model based on root fraction alone. Here I show how the RSA stencil can be calibrated to time-series observations of soil moisture and transpiration to yield a water uptake PFT definition for use in terrestrial models. This model-data integration exercise aims to improve LSM predictions of soil moisture dynamics and, under water-limiting conditions, surface fluxes. These improvements can be expected to significantly impact predictions of downstream variables, including surface fluxes, climate-vegetation feedbacks and soil nutrient cycling.

  6. Intermountain West Military Training Lands Planting Guide: Selecting Seed Mixtures for Actively Used Military Lands

    DTIC Science & Technology

    2009-06-01

    their respective owners. The findings of this report are not to be construed as an official Department of the Army position unless so designated by...Reliable Sandberg bluegrass, a selected-class germplasm (Wal- dron et al. 2006c)  Yakima western yarrow, a source-identified germplasm (Wal- dron ...contaminated lands. Although restoration is outside the scope of these guidelines, land managers may find the guide useful for planning the restoration process

  7. Utilisation of priority traditional medicinal plants and local people's knowledge on their conservation status in arid lands of Kenya (Mwingi District)

    PubMed Central

    2010-01-01

    Mwingi District lies within the Kenyan Arid and Semiarid lands (ASALs) in Eastern Province. Although some ethnobotanical surveys have been undertaken in some arid and semiarid areas of Kenya, limited studies have documented priority medicinal plants as well as local people's awareness of conservation needs of these plants. This study sought to establish the priority traditional medicinal plants used for human, livestock healthcare, and those used for protecting stored grains against pest infestation in Mwingi district. Further, the status of knowledge among the local people on the threat and conservation status of important medicinal species was documented. This study identified 18 species which were regarded as priority traditional medicinal plants for human health. In terms of priority, 8 were classified as moderate, 6 high, while 4 were ranked highest priority species. These four species are Albizia amara (Roxb.) Boiv. (Mimosacaeae), Aloe secundiflora (Engl. (Aloaceae), Acalypha fruticosa Forssk. (Euphorbiaceae) and Salvadora persica L. (Salvadoraceae). In regard to medicinal plants used for ethnoveterinary purposes, eleven species were identified while seven species were reported as being important for obtaining natural products or concoctions used for stored grain preservation especially against weevils. The data obtained revealed that there were new records of priority medicinal plants which had not been documented as priority species in the past. Results on conservation status of these plants showed that more than 80% of the respondents were unaware that wild medicinal plants were declining, and, consequently, few of them have any domesticated species. Some of the species that have been conserved on farm or deliberately allowed to persist when wild habitats are converted into agricultural lands include: Croton megalocarpus Hutch., Aloe secundiflora, Azadirachta indica A. Juss., Warburgia ugandensis Sprague, Ricinus communis L. and Terminalia brownie Fresen

  8. Productivity, biomass partitioning, and energy yield of low-input short-rotation American sycamore (Platanus occidentalis L.) grown on marginal land: Effects of planting density and simulated drought

    Treesearch

    Jean-Christophe Domec; Elissa Ashley; Milan Fischer; Asko Noormets; Jameson Boone; James C. Williamson; John S. King

    2017-01-01

    Short-rotation woody crops (SRWC) grown for bioenergy production are considered a more sustainable feedstock than food crops such as corn and soybean. However, to be sustainable SRWC should be deployed on land not suitable for agriculture (e.g., marginal lands). Here we quantified productivity and energy yield of four SRWC candidate species grown at different planting...

  9. Evolution of animal and plant dicers: early parallel duplications and recurrent adaptation of antiviral RNA binding in plants.

    PubMed

    Mukherjee, Krishanu; Campos, Henry; Kolaczkowski, Bryan

    2013-03-01

    RNA interference (RNAi) is a eukaryotic molecular system that serves two primary functions: 1) gene regulation and 2) protection against selfish elements such as viruses and transposable DNA. Although the biochemistry of RNAi has been detailed in model organisms, very little is known about the broad-scale patterns and forces that have shaped RNAi evolution. Here, we provide a comprehensive evolutionary analysis of the Dicer protein family, which carries out the initial RNA recognition and processing steps in the RNAi pathway. We show that Dicer genes duplicated and diversified independently in early animal and plant evolution, coincident with the origins of multicellularity. We identify a strong signature of long-term protein-coding adaptation that has continually reshaped the RNA-binding pocket of the plant Dicer responsible for antiviral immunity, suggesting an evolutionary arms race with viral factors. We also identify key changes in Dicer domain architecture and sequence leading to specialization in either gene-regulatory or protective functions in animal and plant paralogs. As a whole, these results reveal a dynamic picture in which the evolution of Dicer function has driven elaboration of parallel RNAi functional pathways in animals and plants.

  10. Fallow land effects on land-atmosphere interactions in California drought

    NASA Astrophysics Data System (ADS)

    Lu, Y.; Melton, F. S.; Kueppers, L. M.

    2015-12-01

    The recent drought in California increased the area of fallow land, which is cropland not planted or irrigated per normal agricultural practice. The effects of fallow land on land-atmosphere interactions in drought years are not well studied, but theoretically should alter local energy balance and surface climate relative to normal years, which in turn could affect neighboring cropland. We examined these effects using a regional climate model (Weather Research and Forecasting model) coupled with a dynamic crop growth model (Community Land Model) that has an irrigation scheme to study the effects of fallow land in 2014, an extreme drought year in California. In our study, we used satellite-derived maps of cultivated and fallowed acreage, and defined summer fallow land in 2014 as the reduced percentage of cultivated land for each grid cell relative to the 2011 cultivated area (2011 was the most recent year following a winter with average or above average precipitation). Using a sensitivity experiment that kept large-scale climate boundary conditions constant, we found that fallow land resulted in even dryer and warmer weather that worsened the drought impact. Fallow land increased 2-meter air temperature by 0.1- 4 °C with 0-80% fallow land, mainly due to an increase in nighttime temperature. Fallow land warmed the atmosphere up to 850hpa during the day, and after sunset, the warmed atmosphere emitted downward longwave radiation that prevented the surface from rapidly cooling, and therefore resulted in warmer nights. Fallow land reduced near surface relative humidity by 5-30% and increased vapor pressure deficit by 0.5-2 kPa. These drier conditions increased the irrigation water demand in the nearby cropland: crops required 1-25% more irrigation with 10-80% fallow land within the same 10km grid cell. Our study suggests that fallow land has large impacts on land-atmosphere interactions and increases irrigation requirements in nearby cropland.

  11. Studies of land-cover, land-use, and biophysical properties of vegetation in the Large Scale Biosphere Atmosphere experiment in Amazonia.

    Treesearch

    Dar A. Robertsa; Michael Keller; Joao Vianei Soares

    2003-01-01

    We summarize early research on land-cover, land-use, and biophysical properties of vegetation from the Large Scale Biosphere Atmosphere (LBA) experiment in Amazoˆnia. LBA is an international research program developed to evaluate regional function and to determine how land-use and climate modify biological, chemical and physical processes there. Remote sensing has...

  12. All is not loss: plant biodiversity in the anthropocene.

    PubMed

    Ellis, Erle C; Antill, Erica C; Kreft, Holger

    2012-01-01

    Anthropogenic global changes in biodiversity are generally portrayed in terms of massive native species losses or invasions caused by recent human disturbance. Yet these biodiversity changes and others caused directly by human populations and their use of land tend to co-occur as long-term biodiversity change processes in the Anthropocene. Here we explore contemporary anthropogenic global patterns in vascular plant species richness at regional landscape scales by combining spatially explicit models and estimates for native species loss together with gains in exotics caused by species invasions and the introduction of agricultural domesticates and ornamental exotic plants. The patterns thus derived confirm that while native losses are likely significant across at least half of Earth's ice-free land, model predictions indicate that plant species richness has increased overall in most regional landscapes, mostly because species invasions tend to exceed native losses. While global observing systems and models that integrate anthropogenic species loss, introduction and invasion at regional landscape scales remain at an early stage of development, integrating predictions from existing models within a single assessment confirms their vast global extent and significance while revealing novel patterns and their potential drivers. Effective global stewardship of plant biodiversity in the Anthropocene will require integrated frameworks for observing, modeling and forecasting the different forms of anthropogenic biodiversity change processes at regional landscape scales, towards conserving biodiversity within the novel plant communities created and sustained by human systems.

  13. All Is Not Loss: Plant Biodiversity in the Anthropocene

    PubMed Central

    Ellis, Erle C.; Antill, Erica C.; Kreft, Holger

    2012-01-01

    Anthropogenic global changes in biodiversity are generally portrayed in terms of massive native species losses or invasions caused by recent human disturbance. Yet these biodiversity changes and others caused directly by human populations and their use of land tend to co-occur as long-term biodiversity change processes in the Anthropocene. Here we explore contemporary anthropogenic global patterns in vascular plant species richness at regional landscape scales by combining spatially explicit models and estimates for native species loss together with gains in exotics caused by species invasions and the introduction of agricultural domesticates and ornamental exotic plants. The patterns thus derived confirm that while native losses are likely significant across at least half of Earth's ice-free land, model predictions indicate that plant species richness has increased overall in most regional landscapes, mostly because species invasions tend to exceed native losses. While global observing systems and models that integrate anthropogenic species loss, introduction and invasion at regional landscape scales remain at an early stage of development, integrating predictions from existing models within a single assessment confirms their vast global extent and significance while revealing novel patterns and their potential drivers. Effective global stewardship of plant biodiversity in the Anthropocene will require integrated frameworks for observing, modeling and forecasting the different forms of anthropogenic biodiversity change processes at regional landscape scales, towards conserving biodiversity within the novel plant communities created and sustained by human systems. PMID:22272360

  14. Atmospheric Oxygen Concentrations for the Past 350 Myr Modeled from the δ13C of C3 Land Plants

    NASA Astrophysics Data System (ADS)

    Nordt, L.; Breecker, D.

    2016-12-01

    Numerous studies have focused on the systematic collection of long-term d13C records from marine sediments, but no such isotopic compilation exists for C3 land plants. Consequently, we gathered a meta-data base of 8003 plant-derived δ13C values (ISOORG) from various carbon sources binned into 5 myr time steps. The results of this investigation were reported in a recent publication showing that most δ13C sources co-vary with ten CIEs during the last 400 myr. For this paper we culled ISOORG to produce ISOORG16-H that contains 7025 plant-derived δ13C values from paleo-moist environments to reflect secular controls on the δ13C of C3 plants. We then constructed atmospheric pO2 curves for the past 350 myr using prior experimental work showing a direct relationship between the Δ13C of C3 plants and pO2 concentration. Periods of hyperoxia (25-30% pO2) were identified from 300-250, 225-190, and 110-105 myr, and intervals of hypoxia (10-15% pO2) from 350-345, 245-230, and 185-115 myr. During the last 150 myr, pO2 stabilized at 17-24% except for a notable positive excursion from 110-105 myr. Hyperoxia, apparently from widespread carbon burial, supports the notion of insect gigantism during the Late Paleozoic. Hypoxia during the early Triassic correlates with the coal gap following the collapse of Paleozoic ecosystems. Rising pO2 in the late Triassic seems to reflect renewed carbon burial from reorganization of Mesozoic ecosystems. The middle Mesozoic is characterized by low pO2 during an intense greenhouse interval, with ambient conditions ensuing thereafter possibly linked to carbon burial from the radiation of angiosperms. pO2 concentrations >14% suggest wildfires persisted through the study interval except possibly at 160 and 140 myr. Intervals of low pO2 concentration were likely accompanied by lower atmospheric pressure and higher temperatures, particularly from 245-230 myr and 180-120 myr. Our O2 reconstructions conform with GEOCARBSULF, but not with proxy

  15. Cumulative drought and land-use impacts on perennial vegetation across a North American dryland region

    USGS Publications Warehouse

    Munson, Seth M.; Long, A. Lexine; Wallace, Cynthia; Webb, Robert H.

    2016-01-01

    Question The decline and loss of perennial vegetation in dryland ecosystems due to global change pressures can alter ecosystem properties and initiate land degradation processes. We tracked changes of perennial vegetation using remote sensing to address the question of how prolonged drought and land-use intensification have affected perennial vegetation cover across a desert region in the early 21st century? Location Mojave Desert, southeastern California, southern Nevada, southwestern Utah and northwestern Arizona, USA. Methods We coupled the Moderate-Resolution Imaging Spectroradiometer Enhanced Vegetation Index (MODIS-EVI) with ground-based measurements of perennial vegetation cover taken in about 2000 and about 2010. Using the difference between these years, we determined perennial vegetation changes in the early 21st century and related these shifts to climate, soil and landscape properties, and patterns of land use. Results We found a good fit between MODIS-EVI and perennial vegetation cover (2000: R2 = 0.83 and 2010: R2 = 0.74). The southwestern, far southeastern and central Mojave Desert had large declines in perennial vegetation cover in the early 21st century, while the northeastern and southeastern portions of the desert had increases. These changes were explained by 10-yr precipitation anomalies, particularly in the cool season and during extreme dry or wet years. Areas heavily impacted by visitor use or wildfire lost perennial vegetation cover, and vegetation in protected areas increased to a greater degree than in unprotected areas. Conclusions We find that we can extrapolate previously documented declines of perennial plant cover to an entire desert, and demonstrate that prolonged water shortages coupled with land-use intensification create identifiable patterns of vegetation change in dryland regions.

  16. STS-83 landing views

    NASA Image and Video Library

    2016-08-16

    STS083-S-010 (8 April 1997) --- The main landing gear of the Space Shuttle Columbia touches down on the Shuttle Landing Facility (SLF) runway at the Kennedy Space Center (KSC), after completing almost four days of a scheduled 16-day mission in Earth-orbit. A problem with one of three fuel cells led to an early landing for the seven-member Microgravity Science Laboratory 1 (MSL-1) crew. Touchdown occurred at 1:33:11 p.m. (EDT), April 8, 1997. Onboard Columbia were James D. Halsell, Jr., Susan L. Still, Janice E. Voss, Donald A. Thomas, Michael L. Gernhardt, Roger K. Crouch and Gregory T. Linteris.

  17. Global land-cover and land-use change of the last 6000 years for climate modelling studies: the PAGES LandCover6k initiative and its first achievements

    NASA Astrophysics Data System (ADS)

    Gaillard, Marie-Jose; Morrison, Kathleen; Madella, Marco; Whitehouse, Nicki J.; Pages Landcover6k Sub-Coordinators

    2016-04-01

    The goal of the PAGES LandCover6k initiative is to provide relevant, empirical data on past anthropogenic land-cover change (land-use change) to climate modellers (e.g. the CMIP5 initiative). Land-use change is one of many climate forcings and its effect on climate is still badly understood. Among the effects of land-cover change on climate, the best known are the biogeochemical effects, and in particular the influence on the exchange of CO2 between the land surface and the atmosphere. The biogeophysical effects are less well understood, i.e. the net effect of changes in the albedo and evapotranspiration is complex. Moreover, the net effect of both biogeochemical and biogeophysical processes due to land-use change is still a matter of debate. The LandCover6k working group infers land-use data from fossil pollen records from lake sediments and peat deposits, and from historical archives and archaeological records (including pollen and other palaeoecological records such as wood and plant micro/macroremains). The working group is divided into two activities, i) pollen-based reconstructions of past land cover using pollen-vegetation modelling approaches, and mapping of pollen-based land-cover change using spatial statistics (e.g. Trondman et al., 2015; Pirzimanbein et al., 2014), and ii) upscaling and summarizing historical and archaeological data into maps of major land-use categories linked to quantitative attributes. Studies on pollen productivity of major plant taxa are an essential part of activity i). Pollen productivity estimates are available for a large number of the northern hemisphere, major plant taxa, but are still missing for large parts of the tropics for which research is currently in progress. The results of both activities are then used to revise existing Anthropogenic Land-Cover Change (ALCC) scenarios, the HYDE database (Klein-Goldewijk et al.,) and KK (Kaplan et al.,). Climate modellers (e.g. the CMIP5 initiative) can use the LandCover6k products

  18. Land cover classification for Puget Sound, 1974-1979

    NASA Technical Reports Server (NTRS)

    Eby, J. R.

    1981-01-01

    Digital analysis of LANDSAT data for land cover classification projects in the Puget Sound region is surveyed. Two early rural and urban land use classifications and their application are described. After acquisition of VICAR/IBIs software, another land use classification of the area was performed, and is described in more detail. Future applications are considered.

  19. Leaf evolution in early-diverging ferns: insights from a new fern-like plant from the Late Devonian of China

    PubMed Central

    Wang, De-Ming; Xu, Hong-He; Xue, Jin-Zhuang; Wang, Qi; Liu, Le

    2015-01-01

    Background and Aims With the exception of angiosperms, the main euphyllophyte lineages (i.e. ferns sensu lato, progymnosperms and gymnosperms) had evolved laminate leaves by the Late Devonian. The evolution of laminate leaves, however, remains unclear for early-diverging ferns, largely represented by fern-like plants. This study presents a novel fern-like taxon with pinnules, which provides new insights into the early evolution of laminate leaves in early-diverging ferns. Methods Macrofossil specimens were collected from the Upper Devonian (Famennian) Wutong Formation of Anhui and Jiangsu Provinces, South China. A standard degagement technique was employed to uncover compressed plant portions within the rock matrix. Key Results A new fern-like taxon, Shougangia bella gen. et sp. nov., is described and represents an early-diverging fern with highly derived features. It has a partially creeping stem with adventitious roots only on one side, upright primary and secondary branches arranged in helices, tertiary branches borne alternately or (sub)oppositely, laminate and usually lobed leaves with divergent veins, and complex fertile organs terminating tertiary branches and possessing multiple divisions and numerous terminal sporangia. Conclusions Shougangia bella provides unequivocal fossil evidence for laminate leaves in early-diverging ferns. It suggests that fern-like plants, along with other euphyllophyte lineages, had independently evolved megaphylls by the Late Devonian, possibly in response to a significant decline in atmospheric CO2 concentration. Among fern-like plants, planate ultimate appendages are homologous with laminate pinnules, and in the evolution of megaphylls, fertile organs tend to become complex. PMID:25979918

  20. Relationship between plant traits and resistance to burial by marly sediment

    NASA Astrophysics Data System (ADS)

    Burylo, M.; Rey, F.; Dutoit, T.

    2009-04-01

    In marly lands of the French Southern Alps, harsh soil erosion results in sediment movements during intensive rainfall events. Plants can be submitted to sediment burial in their early stages of development and their protective function may be reduced. In a context of land restoration, it is important to know species resistance to environmental disturbances and to be able to predict it, in particular from plant traits (height, biomass, sugar and starch accumulation). However, few studies about woody species tolerance to burial by sediment have been carried out. Seedlings of five woody species were buried in marly sediment at three different depths in pot experiment during eight weeks: no burial (control), partial burial (50% stem height) and complete burial (100% stem height). Height through time, biomass and survival rates were measured to assess species resistance to burial. Results show that among the five species, only one (Acer campestre) survived complete burial. All plants survived partial burial, but there were significant differences in height and biomass between buried plants and control, and significant differences between species responses. Three different responses to disturbance were identified: negative (Hippophae rhamnoides, Ononis fruticosa), neutral (Robinia pseudo acacia, Pinus nigra) and positive (Acer campestre). Results finally suggest that species resistance to burial by marly sediment is related to sugar accumulation in plant stems.

  1. Dronning Maud Lands (East Antarctica) significance for Late Mesoproterozoic/Early Neoproterozoic supercontinent reconstructions

    NASA Astrophysics Data System (ADS)

    Jacobs, Joachim; Elburg, Marlina; Laeufer, Andreas; Kleinhanns, Ilka C.; Henjes-Kunst, Friedhelm; Estrada, Solveig; Ruppel, Antonia; Damaske, Detlef; Montero, Pilar; Bea, Fernando

    2015-04-01

    The recent study of a so far white spot on the geological map of Dronning Maud Land (DML) during the international GEA expeditions sheds new light on the significance of major tectono-metamorphic provinces of Dronning Maud Land, East Antarctica. The western part of eastern DML allows the characterization and ground-truthing of a large and mostly ice-covered area, that is geophysically distinct and which was previously interpreted as a potentially older cratonic block south of a Late Neoproterozoic/EarlyPaleozoic mobile belt, which is exposed in the Sør Rondane Mts. (SRM). SHRIMP/SIMS zircon analyses of 20 samples together with new geochemistry indicate that the exposed basement consists of a ca. 1000-900 Ma juvenile terrane that is very similar to the juvenile rocks of the SW-Terrane of the SRM, a characteristic gabbro-trondhjemite-tonalite-granite suite. However, in contrast to the southern part of the SW-Terrane, our study area shows intense crustal reworking at medium to high-grade conditions between ca. 630-520 Ma, associated with significant felsic melt production, including A-type granitoid magmatism. Therefore, the study area, and thereby the aeromagnetically distinct SE DML province does neither represent the foreland of a Late Neoproterozoic/EarlyPaleozoic mobile belt, nor a craton, as has previously been speculated. It more likely represents the westward continuation of Rayner-age crust (1000-900 Ma) that has undergone additional protracted LN/EP overprinting. We interpret the southern part of the only weakly overprinted SW-Terrane as a mega-boudin within a broad, rheologically weaker, NW-SE trending LN/EP mobile belt. Rayner-type crust likely continues further west, where it abuts along the SW-trending Forster Magnetic Anomaly. The latter is interpreted as a suture, which separates typical Grenville-age crust of the Maud Belt to the W from Rayner-age crust to the E. The study area has therefore clearly Indian affinities. Its juvenile character with a

  2. Arid Lands Biofuel

    NASA Astrophysics Data System (ADS)

    Neupane, B. P.

    2013-05-01

    Dependence on imported petroleum, as well as consequences from burning fossil fuels, has increased the demand for biofuel sources in the United States. Competition between food crops and biofuel crops has been an increasing concern, however, since it has the potential to raise prices for US beef and grain products due to land and resource competition. Biofuel crops that can be grown on land not suitable for food crops are thus attractive, but also need to produce biofuels in a financially sustainable manner. In the intermountain west of Nevada, biofuel crops need to survive on low-organic soils with limited precipitation when grown in areas that are not competing with food and feed. The plants must also yield an oil content sufficiently high to allow economically viable fuel production, including growing and harvesting the crop as well as converting the hydrocarbons into a liquid fuel. Gumweed (Grindelia squarrosa) currently appears to satisfy all of these requirements and is commonly observed throughout the west. The plant favors dry, sandy soils and is most commonly found on roadsides and other freshly disturbed land. A warm season biennial, the gumweed plant is part of the sunflower family and normally grows 2-4 feet high with numerous yellow flowers and curly leaves. The gumweed plant contains a large store of diterpene resins—most abundantly grindelic acid— similar to the saps found on pine trees that are used to make inks and adhesives. The dry weight harvest on the experimental field is 5130 lbs/acre. Whole plant biomass yields between 11-15% (average 13%) biocrude when subjected to acetone extraction whereas the buds alone contains up to a maximum of 35% biocrude when harvested in 'white milky' stage. The extract is then converted to basic form (sodium grindelate) followed by extraction of nonpolar constituents (mostly terpenes) with hexane and extracted back to ethyl acetate in acidified condition. Ethyl acetate is removed under vacuum to leave a dark

  3. AN EARLY STAGE IN THE PLANT RECOLONIZATION OF A NUCLEAR TARGET AREA

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Rickard, W.H.; Shields, L.M.

    1963-01-01

    Vegetational analyses were conducted three years postdetonation in a nuclear target area in a Grayia spinosa-Lycium andersonii community in Yucca Fiat, Nevada. Annual plants dominated the early stage of recolonization and were quantitatively more abundant in the disturbed areas than in an adjacent undisturbed shrub community. Ment zelia albicaulis and Chaenactis steviodes occurred in both disturbed and undisturbed areas, however; Mentzelia was more abundant in disturbed areas while Chaenactis was more abundant in the undisturbed community. Salsola kali was confined to disturbed areas while Phacelia vallismortae was more often encountered in the undisturbed community. The plant recolonization of a mechanicallymore » disturbed area was quantitatively and qualitatively more like that of the interior zone of the nuclear target area than less disturbed habitats. These data support a conclusion that soil displacement presents a more rigorous habitat for plant recolonization than disturbances created by the wider ranging destructive components of a nuclear detonation. (auth)« less

  4. Quantifying the effects of land use and climate on Holocene vegetation in Europe

    NASA Astrophysics Data System (ADS)

    Marquer, Laurent; Gaillard, Marie-José; Sugita, Shinya; Poska, Anneli; Trondman, Anna-Kari; Mazier, Florence; Nielsen, Anne Birgitte; Fyfe, Ralph M.; Jönsson, Anna Maria; Smith, Benjamin; Kaplan, Jed O.; Alenius, Teija; Birks, H. John B.; Bjune, Anne E.; Christiansen, Jörg; Dodson, John; Edwards, Kevin J.; Giesecke, Thomas; Herzschuh, Ulrike; Kangur, Mihkel; Koff, Tiiu; Latałowa, Małgorzata; Lechterbeck, Jutta; Olofsson, Jörgen; Seppä, Heikki

    2017-09-01

    Early agriculture can be detected in palaeovegetation records, but quantification of the relative importance of climate and land use in influencing regional vegetation composition since the onset of agriculture is a topic that is rarely addressed. We present a novel approach that combines pollen-based REVEALS estimates of plant cover with climate, anthropogenic land-cover and dynamic vegetation modelling results. This is used to quantify the relative impacts of land use and climate on Holocene vegetation at a sub-continental scale, i.e. northern and western Europe north of the Alps. We use redundancy analysis and variation partitioning to quantify the percentage of variation in vegetation composition explained by the climate and land-use variables, and Monte Carlo permutation tests to assess the statistical significance of each variable. We further use a similarity index to combine pollen-based REVEALS estimates with climate-driven dynamic vegetation modelling results. The overall results indicate that climate is the major driver of vegetation when the Holocene is considered as a whole and at the sub-continental scale, although land use is important regionally. Four critical phases of land-use effects on vegetation are identified. The first phase (from 7000 to 6500 BP) corresponds to the early impacts on vegetation of farming and Neolithic forest clearance and to the dominance of climate as a driver of vegetation change. During the second phase (from 4500 to 4000 BP), land use becomes a major control of vegetation. Climate is still the principal driver, although its influence decreases gradually. The third phase (from 2000 to 1500 BP) is characterised by the continued role of climate on vegetation as a consequence of late-Holocene climate shifts and specific climate events that influence vegetation as well as land use. The last phase (from 500 to 350 BP) shows an acceleration of vegetation changes, in particular during the last century, caused by new farming

  5. Structure and dynamics of thylakoids in land plants.

    PubMed

    Pribil, Mathias; Labs, Mathias; Leister, Dario

    2014-05-01

    Thylakoids of land plants have a bipartite structure, consisting of cylindrical grana stacks, made of membranous discs piled one on top of the other, and stroma lamellae which are helically wound around the cylinders. Protein complexes predominantly located in the stroma lamellae and grana end membranes are either bulky [photosystem I (PSI) and the chloroplast ATP synthase (cpATPase)] or are involved in cyclic electron flow [the NAD(P)H dehydrogenase (NDH) and PGRL1-PGR5 heterodimers], whereas photosystem II (PSII) and its light-harvesting complex (LHCII) are found in the appressed membranes of the granum. Stacking of grana is thought to be due to adhesion between Lhcb proteins (LHCII or CP26) located in opposed thylakoid membranes. The grana margins contain oligomers of CURT1 proteins, which appear to control the size and number of grana discs in a dosage- and phosphorylation-dependent manner. Depending on light conditions, thylakoid membranes undergo dynamic structural changes that involve alterations in granum diameter and height, vertical unstacking of grana, and swelling of the thylakoid lumen. This plasticity is realized predominantly by reorganization of the supramolecular structure of protein complexes within grana stacks and by changes in multiprotein complex composition between appressed and non-appressed membrane domains. Reversible phosphorylation of LHC proteins (LHCPs) and PSII components appears to initiate most of the underlying regulatory mechanisms. An update on the roles of lipids, proteins, and protein complexes, as well as possible trafficking mechanisms, during thylakoid biogenesis and the de-etiolation process complements this review.

  6. The biogeophysical climatic impacts of anthropogenic land use change during the Holocene

    NASA Astrophysics Data System (ADS)

    Smith, M. C.; Singarayer, J. S.; Valdes, P. J.; Kaplan, J. O.; Branch, N. P.

    2015-10-01

    The first agricultural societies were established around 10 ka BP and had spread across much of Europe and southern Asia by 5.5 ka BP with resultant anthropogenic deforestation for crop and pasture land. Various studies have attempted to assess the biogeochemical implications for Holocene climate in terms of increased carbon dioxide and methane emissions. However, less work has been done to examine the biogeophysical impacts of this early land use change. In this study, global climate model simulations with HadCM3 were used to examine the biogeophysical effects of Holocene land cover change on climate, both globally and regionally, from the early Holocene (8 ka BP) to the early industrial era (1850 CE). Two experiments were performed with alternative descriptions of past vegetation: (i) potential natural vegetation simulated by TRIFFID but no land-use changes, and (ii) where the anthropogenic land use model, KK10 (Kaplan et al., 2009, 2011) has been used to set the HadCM3 crop regions. Snapshot simulations have been run at 1000 year intervals to examine when the first signature of anthropogenic climate change can be detected both regionally, in the areas of land use change, and globally. Results indicate that in regions of early land disturbance such as Europe and S.E. Asia detectable temperature changes, outside the normal range of variability, are encountered in the model as early as 7 ka BP in the June/July/August (JJA) season and throughout the entire annual cycle by 2-3 ka BP. Areas outside the regions of land disturbance are also affected, with virtually the whole globe experiencing significant temperature changes (predominantly cooling) by the early industrial period. Large-scale precipitation features such as the Indian monsoon, the intertropical convergence zone (ITCZ), and the North Atlantic storm track are also impacted by local land use and remote teleconnections. We investigated how advection by surface winds, mean sea level pressure (MSLP) anomalies

  7. Intercontinental dispersal of giant thermophilic ants across the Arctic during early Eocene hyperthermals.

    PubMed

    Archibald, S Bruce; Johnson, Kirk R; Mathewes, Rolf W; Greenwood, David R

    2011-12-22

    Early Eocene land bridges allowed numerous plant and animal species to cross between Europe and North America via the Arctic. While many species suited to prevailing cool Arctic climates would have been able to cross throughout much of this period, others would have found dispersal opportunities only during limited intervals when their requirements for higher temperatures were met. Here, we present Titanomyrma lubei gen. et sp. nov. from Wyoming, USA, a new giant (greater than 5 cm long) formiciine ant from the early Eocene (approx. 49.5 Ma) Green River Formation. We show that the extinct ant subfamily Formiciinae is only known from localities with an estimated mean annual temperature of about 20°C or greater, consistent with the tropical ranges of almost all of the largest living ant species. This is, to our knowledge, the first known formiciine of gigantic size in the Western Hemisphere and the first reported cross-Arctic dispersal by a thermophilic insect group. This implies intercontinental migration during one or more brief high-temperature episodes (hyperthermals) sometime between the latest Palaeocene establishment of intercontinental land connections and the presence of giant formiciines in Europe and North America by the early middle Eocene.

  8. Sustainable biomass production on Marginal Lands (SEEMLA)

    NASA Astrophysics Data System (ADS)

    Barbera, Federica; Baumgarten, Wibke; Pelikan, Vincent

    2017-04-01

    Sustainable biomass production on Marginal Lands (SEEMLA) The main objective of the H2020 funded EU project SEEMLA (acronym for Sustainable Exploitation of Biomass for Bioenergy from Marginal Lands in Europe) is the establishment of suitable innovative land-use strategies for a sustainable production of plant-based energy on marginal lands while improving general ecosystem services. The use of marginal lands (MagL) could contribute to the mitigation of the fast growing competition between traditional food production and production of renewable bio-resources on arable lands. SEEMLA focuses on the promotion of re-conversion of MagLs for the production of bioenergy through the direct involvement of farmers and forester, the strengthening of local small-scale supply chains, and the promotion of plantations of bioenergy plants on MagLs. Life cycle assessment is performed in order to analyse possible impacts on the environment. A soil quality rating tool is applied to define and classify MagL. Suitable perennial and woody bioenergy crops are selected to be grown in pilot areas in the partner countries Ukraine, Greece and Germany. SEEMLA is expected to contribute to an increasing demand of biomass for bioenergy production in order to meet the 2020 targets and beyond.

  9. Conservation of Male Sterility 2 function during spore and pollen wall development supports an evolutionarily early recruitment of a core component in the sporopollenin biosynthetic pathway.

    PubMed

    Wallace, Simon; Chater, Caspar C; Kamisugi, Yasuko; Cuming, Andrew C; Wellman, Charles H; Beerling, David J; Fleming, Andrew J

    2015-01-01

    The early evolution of plants required the acquisition of a number of key adaptations to overcome physiological difficulties associated with survival on land. One of these was a tough sporopollenin wall that enclosed reproductive propagules and provided protection from desiccation and UV-B radiation. All land plants possess such walled spores (or their derived homologue, pollen). We took a reverse genetics approach, consisting of knock-out and complementation experiments to test the functional conservation of the sporopollenin-associated gene MALE STERILTY 2 (which is essential for pollen wall development in Arabidopsis thaliana) in the bryophyte Physcomitrella patens. Knock-outs of a putative moss homologue of the A. thaliana MS2 gene, which is highly expressed in the moss sporophyte, led to spores with highly defective walls comparable to that observed in the A. thaliana ms2 mutant, and extremely compromised germination. Conversely, the moss MS2 gene could not rescue the A. thaliana ms2 phenotype. The results presented here suggest that a core component of the biochemical and developmental pathway required for angiosperm pollen wall development was recruited early in land plant evolution but the continued increase in pollen wall complexity observed in angiosperms has been accompanied by divergence in MS2 gene function. © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

  10. Comprehensive data set of global land cover change for land surface model applications

    NASA Astrophysics Data System (ADS)

    Sterling, Shannon; Ducharne, AgnèS.

    2008-09-01

    To increase our understanding of how humans have altered the Earth's surface and to facilitate land surface modeling experiments aimed to elucidate the direct impact of land cover change on the Earth system, we create and analyze a database of global land use/cover change (LUCC). From a combination of sources including satellite imagery and other remote sensing, ecological modeling, and country surveys, we adapt and synthesize existing maps of potential land cover and layers of the major anthropogenic land covers, including a layer of wetland loss, that are then tailored for land surface modeling studies. Our map database shows that anthropogenic land cover totals to approximately 40% of the Earth's surface, consistent with literature estimates. Almost all (92%) of the natural grassland on the Earth has been converted to human use, mostly grazing land, and the natural temperate savanna with mixed C3/C4 is almost completely lost (˜90%), due mostly to conversion to cropland. Yet the resultant change in functioning, in terms of plant functional types, of the Earth system from land cover change is dominated by a loss of tree cover. Finally, we identify need for standardization of percent bare soil for global land covers and for a global map of tree plantations. Estimates of land cover change are inherently uncertain, and these uncertainties propagate into modeling studies of the impact of land cover change on the Earth system; to begin to address this problem, modelers need to document fully areas of land cover change used in their studies.

  11. THE USE OF NTM DATA FOR THE ACCURACY ASSESSMENT OF LANDSAT DERIVED LAND USE/LAND COVER MAPS

    EPA Science Inventory

    National Technical Means (NTM) data were utilized to validate the accuracy of a series of LANDSAT derived Land Use / Land Cover (LU/LC) maps for the time frames mid- I 970s, early- I 990s and mid- I 990s. The area-of-interest for these maps is a 2000 square mile portion of the De...

  12. Leaf evolution in early-diverging ferns: insights from a new fern-like plant from the Late Devonian of China.

    PubMed

    Wang, De-Ming; Xu, Hong-He; Xue, Jin-Zhuang; Wang, Qi; Liu, Le

    2015-06-01

    With the exception of angiosperms, the main euphyllophyte lineages (i.e. ferns sensu lato, progymnosperms and gymnosperms) had evolved laminate leaves by the Late Devonian. The evolution of laminate leaves, however, remains unclear for early-diverging ferns, largely represented by fern-like plants. This study presents a novel fern-like taxon with pinnules, which provides new insights into the early evolution of laminate leaves in early-diverging ferns. Macrofossil specimens were collected from the Upper Devonian (Famennian) Wutong Formation of Anhui and Jiangsu Provinces, South China. A standard degagement technique was employed to uncover compressed plant portions within the rock matrix. A new fern-like taxon, SHOUGANGIA BELLA GEN ET SP NOV: , is described and represents an early-diverging fern with highly derived features. It has a partially creeping stem with adventitious roots only on one side, upright primary and secondary branches arranged in helices, tertiary branches borne alternately or (sub)oppositely, laminate and usually lobed leaves with divergent veins, and complex fertile organs terminating tertiary branches and possessing multiple divisions and numerous terminal sporangia. Shougangia bella provides unequivocal fossil evidence for laminate leaves in early-diverging ferns. It suggests that fern-like plants, along with other euphyllophyte lineages, had independently evolved megaphylls by the Late Devonian, possibly in response to a significant decline in atmospheric CO2 concentration. Among fern-like plants, planate ultimate appendages are homologous with laminate pinnules, and in the evolution of megaphylls, fertile organs tend to become complex. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  13. Post-translational control of nitrate reductase activity responding to light and photosynthesis evolved already in the early vascular plants.

    PubMed

    Nemie-Feyissa, Dugassa; Królicka, Adriana; Førland, Nina; Hansen, Margarita; Heidari, Behzad; Lillo, Cathrine

    2013-05-01

    Regulation of nitrate reductase (NR) by reversible phosphorylation at a conserved motif is well established in higher plants, and enables regulation of NR in response to rapid fluctuations in light intensity. This regulation is not conserved in algae NR, and we wished to test the evolutionary origin of the regulatory mechanism by physiological examination of ancient land plants. Especially a member of the lycophytes is of interest since their NR is candidate for regulation by reversible phosphorylation based on sequence analysis. We compared Selaginella kraussiana, a member of the lycophytes and earliest vascular plants, with the angiosperm Arabidopsis thaliana, and also tested the moss Physcomitrella patens. Interestingly, optimization of assay conditions revealed that S. kraussiana NR used NADH as an electron donor like A. thaliana, whereas P. patens NR activity depended on NADPH. Examination of light/darkness effects showed that S. kraussiana NR was rapidly regulated similar to A. thaliana NR when a differential (Mg(2+) contra EDTA) assay was used to reveal activity state of NR. This implies that already existing NR enzyme was post-translationally activated by light in both species. Light had a positive effect also on de novo synthesis of NR in S. kraussiana, which could be shown after the plants had been exposed to a prolonged dark period (7 days). Daily variations in NR activity were mainly caused by post-translational modifications. As for angiosperms, the post-translational light activation of NR in S. kraussiana was inhibited by 3-(3,4-dichlorophenyl)-1*1-dimethylurea (DCMU), an inhibitor of photosynthesis and stomata opening. Evolutionary, a post-translational control mechanism for NR have occurred before or in parallel with development of vascular tissue in land plants, and appears to be part of a complex mechanisms for coordination of CO2 and nitrogen metabolism in these plants. Copyright © 2013 Elsevier GmbH. All rights reserved.

  14. Interactions between past land use, life-history traits and understory spatial heterogeneity

    Treesearch

    Jennifer M. Fraterrigo; Monica Turner; Scott M. Pearson

    2006-01-01

    Past land use has contributed to variability in the distribution of herbaceous species by reducing plant abundance and altering species' chances of recolonizing suitable habitat. Land use may also influence plant heterogeneity by changing environmental conditions within stands. We compared the variability of understory herb abundance in southern Appalachian...

  15. Oils and rubber from arid land plants

    NASA Astrophysics Data System (ADS)

    Johnson, J. D.; Hinman, C. W.

    1980-05-01

    In this article the economic development potentials of Cucurbita species (buffalo gourd and others), Simmondsia chinensis (jojoba), Euphorbia lathyris (gopher plant), and Parthenium argentatum (guayule) are discussed. All of these plants may become important sources of oils or rubber.

  16. Minnesota's tax-forfeited land: some trends in acreages, sales, and prices.

    Treesearch

    David C. Lothner; Edwin Kallio; David T. Davis

    1978-01-01

    The area of tax-forfeited land that is county-administered in Minnesota is currently estimated at almost 2.9 million acres--a decrease of about 17% since the mid-1960's. This decrease is the result of a change in land sales, land forfeitures, and other land transfers. Not only have land sales decreased since the early 1960's, but also less land has been...

  17. Early evidence (late 2nd millennium BCE) of plant-based dyeing of textiles from Timna, Israel

    PubMed Central

    Sukenik, Naama; Iluz, David; Amar, Zohar; Varvak, Alexander; Workman, Vanessa; Shamir, Orit; Ben-Yosef, Erez

    2017-01-01

    Abstract In this article, we focus on the analysis of dyed textile fragments uncovered at an early Iron Age (11th-10th centuries BCE) copper smelting site during new excavations in the Timna Valley conducted by the Central Timna Valley (CTV) Project, as well as those found by the Arabah Expedition at the Hathor Temple (Site 200), dated to the Late Bronze/early Iron Ages (13th-11th centuries BCE). Analysis by HPLC-DAD identified two organic dyestuffs, Rubia tinctorum L. and indigotin, from a plant source (probably Isatis tinctoria L.). They are among the earliest plants known in the dyeing craft and cultivated primarily for this purpose. This study provides the earliest evidence of textiles dyed utilizing a chemical dyeing process based on an industrial dyeing plant from the Levant. Moreover, our results shed new light on the society operating the copper mines at the time, suggesting the existence of an elite that was interested in these high quality textiles and invested efforts in procuring them by long-distance trade. PMID:28658314

  18. Early evidence (late 2nd millennium BCE) of plant-based dyeing of textiles from Timna, Israel.

    PubMed

    Sukenik, Naama; Iluz, David; Amar, Zohar; Varvak, Alexander; Workman, Vanessa; Shamir, Orit; Ben-Yosef, Erez

    2017-01-01

    In this article, we focus on the analysis of dyed textile fragments uncovered at an early Iron Age (11th-10th centuries BCE) copper smelting site during new excavations in the Timna Valley conducted by the Central Timna Valley (CTV) Project, as well as those found by the Arabah Expedition at the Hathor Temple (Site 200), dated to the Late Bronze/early Iron Ages (13th-11th centuries BCE). Analysis by HPLC-DAD identified two organic dyestuffs, Rubia tinctorum L. and indigotin, from a plant source (probably Isatis tinctoria L.). They are among the earliest plants known in the dyeing craft and cultivated primarily for this purpose. This study provides the earliest evidence of textiles dyed utilizing a chemical dyeing process based on an industrial dyeing plant from the Levant. Moreover, our results shed new light on the society operating the copper mines at the time, suggesting the existence of an elite that was interested in these high quality textiles and invested efforts in procuring them by long-distance trade.

  19. Bilaterally symmetric axes with rhizoids composed the rooting structure of the common ancestor of vascular plants.

    PubMed

    Hetherington, Alexander J; Dolan, Liam

    2018-02-05

    There are two general types of rooting systems in extant land plants: gametophyte rhizoids and sporophyte root axes. These structures carry out the rooting function in the free-living stage of almost all land plant gametophytes and sporophytes, respectively. Extant vascular plants develop a dominant, free-living sporophyte on which roots form, with the exception of a small number of taxa that have secondarily lost roots. However, fossil evidence indicates that early vascular plants did not develop sporophyte roots. We propose that the common ancestor of vascular plants developed a unique rooting system-rhizoidal sporophyte axes. Here we present a synthesis and reinterpretation of the rootless sporophytes of Horneophyton lignieri , Aglaophyton majus , Rhynia gwynne-vaughanii and Nothia aphylla preserved in the Rhynie chert. We show that the sporophyte rooting structures of all four plants comprised regions of plagiotropic (horizontal) axes that developed unicellular rhizoids on their underside. These regions of axes with rhizoids developed bilateral symmetry making them distinct from the other regions which were radially symmetrical. We hypothesize that rhizoidal sporophyte axes constituted the rooting structures in the common ancestor of vascular plants because the phylogenetic positions of these plants span the origin of the vascular lineage.This article is part of a discussion meeting issue 'The Rhynie cherts: our earliest terrestrial ecosystem revisited'. © 2017 The Authors.

  20. Bilaterally symmetric axes with rhizoids composed the rooting structure of the common ancestor of vascular plants

    PubMed Central

    2018-01-01

    There are two general types of rooting systems in extant land plants: gametophyte rhizoids and sporophyte root axes. These structures carry out the rooting function in the free-living stage of almost all land plant gametophytes and sporophytes, respectively. Extant vascular plants develop a dominant, free-living sporophyte on which roots form, with the exception of a small number of taxa that have secondarily lost roots. However, fossil evidence indicates that early vascular plants did not develop sporophyte roots. We propose that the common ancestor of vascular plants developed a unique rooting system—rhizoidal sporophyte axes. Here we present a synthesis and reinterpretation of the rootless sporophytes of Horneophyton lignieri, Aglaophyton majus, Rhynia gwynne-vaughanii and Nothia aphylla preserved in the Rhynie chert. We show that the sporophyte rooting structures of all four plants comprised regions of plagiotropic (horizontal) axes that developed unicellular rhizoids on their underside. These regions of axes with rhizoids developed bilateral symmetry making them distinct from the other regions which were radially symmetrical. We hypothesize that rhizoidal sporophyte axes constituted the rooting structures in the common ancestor of vascular plants because the phylogenetic positions of these plants span the origin of the vascular lineage. This article is part of a discussion meeting issue ‘The Rhynie cherts: our earliest terrestrial ecosystem revisited’. PMID:29254968

  1. How do land management practices affect net ecosystem CO2 exchange of an invasive plant infestation?

    NASA Astrophysics Data System (ADS)

    Sonnentag, O.; Detto, M.; Runkle, B.; Kelly, M.; Baldocchi, D. D.

    2009-12-01

    Ecosystem gas and energy exchanges of invasive plant infestations under different land management practices have been subject of few studies and thus little is known. Our goal is to characterize seasonal changes in net ecosystem CO2 exchange (NEE) through the processes of photosynthesis (GEP) and ecosystem respiration (Reco) of a grassland used as pasture yet infested by perennial pepperweed (Lepidium latifolium) in California’s Sacramento-San Joaquin River Delta. We analyze eddy-covariance supported by environmental and canopy-scale hyperspectral reflectance measurements acquired in 2007-2009. Our study covers three summer drought periods with slightly different land management practices. Over the study period the site was subject to year-round grazing, and in 2008 the site was additionally mowed. Specific questions we address are a) how does pepperweed flowering affect GEP, b) does a mowing event affect NEE mainly through GEP or Reco, and c) can the combined effects of phenology and mowing on pepperweed NEE potentially be tracked using routinely applied remote sensing techniques? Preliminary results indicate that pepperweed flowering drastically decreases photosynthetic CO2 uptake due to shading by the dense arrangement of white flowers at the canopy top, causing the infestation to be almost CO2 neutral. In contrast, mowing causes the infestation to act as moderate net CO2 sink, mainly due to increased CO2 uptake during regrowth. We demonstrate that spectral regions other than commonly-used red and near-infrared might be more promising for pepperweed monitoring because of its spectral uniqueness during the flowering phase. Our results have important implications for land-use land-cover (LULC) change studies when biological invasions and their management alter ecosystem structure and functioning but not necessarily the respective LULC class.

  2. Land use and habitat conditions across the southwestern Wyoming sagebrush steppe: development impacts, management effectiveness and the distribution of invasive plants

    USGS Publications Warehouse

    Manier, Daniel J.; Aldridge, Cameron L.; Anderson, Patrick; Chong, Geneva; Homer, Collin G.; O'Donnell, Michael S.; Schell, Spencer

    2011-01-01

    For the past several years, USGS has taken a multi-faceted approach to investigating the condition and trends in sagebrush steppe ecosystems. This recent effort builds upon decades of work in semi-arid ecosystems providing a specific, applied focus on the cumulative impacts of expanding human activities across these landscapes. Here, we discuss several on-going projects contributing to these efforts: (1) mapping and monitoring the distribution and condition of shrub steppe communities with local detail at a regional scale, (2) assessing the relationships between specific, land-use features (for example, roads, transmission lines, industrial pads) and invasive plants, including their potential (environmentally defined) distribution across the region, and (3) monitoring the effects of habitat treatments on the ecosystem, including wildlife use and invasive plant abundance. This research is focused on the northern sagebrush steppe, primarily in Wyoming, but also extending into Montana, Colorado, Utah and Idaho. The study area includes a range of sagebrush types (including, Artemisia tridentata ssp. tridentata, Artemisia tridentata ssp. wyomingensis, Artemisia tridentata ssp. vaseyana, Artemisia nova) and other semi-arid shrubland types (for example, Sarcobatus vermiculatus, Atriplex confertifolia, Atriplex gardneri), impacted by extensive interface between steppe ecosystems and industrial energy activities resulting in a revealing multiple-variable analysis. We use a combination of remote sensing (AWiFS (1 Any reference to platforms, data sources, equipment, software, patented or trade-marked methods is for information purposes only. It does not represent endorsement of the U.S.D.I., U.S.G.S. or the authors), Landsat and Quickbird platforms), Geographic Information System (GIS) design and data management, and field-based, replicated sampling to generate multiple scales of data representing the distribution of shrub communities for the habitat inventory. Invasive plant

  3. Woody plants and woody plant management: ecology, safety, environmental impact

    Treesearch

    James H. Miller

    2001-01-01

    Wise and effective woody plant management is an increasing necessity for many land uses and conservation practices, especially on forests and rangelands where native or exotic plants are affecting productivity, access, or critical habitat. Tools and approaches for managing woody plants have been under concerted development for the past 50 years, integrating mechanical...

  4. Land-sea coupling of early Pleistocene glacial cycles in the southern North Sea exhibit dominant Northern Hemisphere forcing

    NASA Astrophysics Data System (ADS)

    Donders, Timme H.; van Helmond, Niels A. G. M.; Verreussel, Roel; Munsterman, Dirk; ten Veen, Johan; Speijer, Robert P.; Weijers, Johan W. H.; Sangiorgi, Francesca; Peterse, Francien; Reichart, Gert-Jan; Sinninghe Damsté, Jaap S.; Lourens, Lucas; Kuhlmann, Gesa; Brinkhuis, Henk

    2018-03-01

    We assess the disputed phase relations between forcing and climatic response in the early Pleistocene with a spliced Gelasian (˜ 2.6-1.8 Ma) multi-proxy record from the southern North Sea basin. The cored sections couple climate evolution on both land and sea during the intensification of Northern Hemisphere glaciation (NHG) in NW Europe, providing the first well-constrained stratigraphic sequence of the classic terrestrial Praetiglian stage. Terrestrial signals were derived from the Eridanos paleoriver, a major fluvial system that contributed a large amount of freshwater to the northeast Atlantic. Due to its latitudinal position, the Eridanos catchment was likely affected by early Pleistocene NHG, leading to intermittent shutdown and reactivation of river flow and sediment transport. Here we apply organic geochemistry, palynology, carbonate isotope geochemistry, and seismostratigraphy to document both vegetation changes in the Eridanos catchment and regional surface water conditions and relate them to early Pleistocene glacial-interglacial cycles and relative sea level changes. Paleomagnetic and palynological data provide a solid integrated timeframe that ties the obliquity cycles, expressed in the borehole geophysical logs, to Marine Isotope Stages (MIS) 103 to 92, independently confirmed by a local benthic oxygen isotope record. Marine and terrestrial palynological and organic geochemical records provide high-resolution reconstructions of relative terrestrial and sea surface temperature (TT and SST), vegetation, relative sea level, and coastal influence.During the prominent cold stages MIS 98 and 96, as well as 94, the record indicates increased non-arboreal vegetation, low SST and TT, and low relative sea level. During the warm stages MIS 99, 97, and 95 we infer increased stratification of the water column together with a higher percentage of arboreal vegetation, high SST, and relative sea level maxima. The early Pleistocene distinct warm-cold alterations are

  5. [Effects of land use change on carbon storage in terrestrial ecosystem].

    PubMed

    Yang, Jingcheng; Han, Xingguo; Huang, Jianhui; Pan, Qingmin

    2003-08-01

    Terrestrial ecosystem is an important carbon pool, which plays a crucial role in carbon biogeochemical cycle. Human activities such as fossil fuel combustion and land use change have resulted in carbon fluxes from terrestrial ecosystem to the atmosphere, which increased the atmospheric CO2 concentration, and reinforced the greenhouse effect. Land use change affects the structure and function of the terrestrial ecosystem, which causes its change of carbon storage. To a great extent, the change of carbon storage lies in the type of ecosystem and the change of land use patterns. The conversion of forest to agricultural land and pasture causes a large reduction of carbon storage in vegetation and soil, and the decrease of soil carbon concentration is mainly caused by the reduction of detritus, the acceleration of soil organic matter decomposition, and the destroy of physical protection to organic matter due to agricultural practices. The loss of soil organic matter appears at the early stage after deforestation, and the loss rate is influenced by many factors and soil physical, chemical and biological processes. The conversion of agricultural land and pasture to forest and many conservative agricultural practices can sequester atmospheric carbon in vegetation and soil. Vegetation can sequester large amounts of carbon from atmosphere, while carbon accumulation in soil varies greatly because of farming history and soil spatial heterogeneity. Conservative agricultural practices such as no-tillage, reasonable cropping system, and fertilization can influence soil physical and chemical characters, plant growth, quality and quantity of stubble, and soil microbial biomass and its activity, and hence, maintain and increase soil carbon concentration.

  6. Testing the use of a land cover map for habitat ranking in boreal forests.

    PubMed

    Hilli, Milla; Kuitunen, Markku T

    2005-04-01

    Habitat loss and modification is one of the major threats to biodiversity and the preservation of conservation values. We use the term ''conservation value'' to mean the benefit of nature or habitats for species. The importance of identifying and preserving conservation values has increased with the decline in biodiversity and the adoption of more stringent environmental legislation. In this study, conservation values were considered in the context of land-use planning and the rapidly increasing demand for more accurate methods of predicting and identifying these values. We used a k-nearest neighbor interpreted satellite (Landsat TM) image classified in 61 classes to assess sites with potential conservation values at the regional and landscape planning scale. Classification was made at the National Land Survey of Finland for main tree species, timber volume, land-use type, and soil on the basis of spectral reflectance in satellite image together with broad numerical reference data. We used the number and rarity of vascular plant species observed in the field as indicators for potential conservation values. We assumed that significant differences in the species richness, rarity, or composition of flora among the classes interpreted in the satellite image would also mean a difference in conservation values among these classes. We found significant differences in species richness among the original satellite image classes. Many of the classes examined could be distinguished by the number of plant species. Species composition also differed correspondingly. Rare species were most abundant in old spruce forests (>200 m3/ha), raising the position of such forests in the ranking of categories according to conservation values. The original satellite image classification was correct for 70% of the sites studied. We concluded that interpreted satellite data can serve as a useful source for evaluating habitat categories on the basis of plant species richness and rarity

  7. Direction of illumination controls gametophyte orientation in seedless plants and related algae

    PubMed Central

    Cardona-Correa, Christopher; Ecker, Alice; Graham, Linda E

    2015-01-01

    The environmental influences that determine dorsiventral or axial gametophyte orientation are unknown for most modern seedless plants. To fill this gap, an experimental laboratory system was employed to evaluate the relative effects of light direction and gravity on body orientation of the dorsiventral green alga Coleochaete orbicularis, and gametophytes of liverworts Blasia pusilla and Marchantia polymorpha, early-diverging moss Sphagnum compactum, and fern Ceratopteris richardii, the latter functioning as experimental control. Replicate clonal cultures were experimentally illuminated only from above, only from below, or from multiple directions, with the same near-saturation PAR level for periods brief enough to minimize nutrient limitation effects, and orientation of new growth was evaluated. For all species tested, direction of illumination exerted stronger control over gametophyte body orientation than gravity. When illuminated only from below: 1) axial Sphagnum gametophores that had initially grown into an overlying air space inverted growth by 180°, burrowing into the substrate; 2) new growth of dorsiventral Blasia, Marchantia, and Ceratopteris gametophytes–whose ventral rhizoids initially penetrated agar substrate and dorsal surfaces initially faced overlying airspace–twisted 180° so that ventral surfaces bearing rhizoids faced overlying air space and rhizoids extended into the air; and 3) Coleochaete lost typical dorsiventral organization and diagnostic dorsal hairs. Direction of illumination also exerted stronger control over orientation of liverwort new growth than surface contact did. These results indicate that early land plants likely inherited light-directed gametophyte body orientation from ancestral streptophyte algae and suggest a mechanism for reorientation of gametophyte-dominant land plants after spatial disturbance. PMID:26237278

  8. Direction of illumination controls gametophyte orientation in seedless plants and related algae.

    PubMed

    Cardona-Correa, Christopher; Ecker, Alice; Graham, Linda E

    2015-01-01

    The environmental influences that determine dorsiventral or axial gametophyte orientation are unknown for most modern seedless plants. To fill this gap, an experimental laboratory system was employed to evaluate the relative effects of light direction and gravity on body orientation of the dorsiventral green alga Coleochaete orbicularis, and gametophytes of liverworts Blasia pusilla and Marchantia polymorpha, early-diverging moss Sphagnum compactum, and fern Ceratopteris richardii, the latter functioning as experimental control. Replicate clonal cultures were experimentally illuminated only from above, only from below, or from multiple directions, with the same near-saturation PAR level for periods brief enough to minimize nutrient limitation effects, and orientation of new growth was evaluated. For all species tested, direction of illumination exerted stronger control over gametophyte body orientation than gravity. When illuminated only from below: 1) axial Sphagnum gametophores that had initially grown into an overlying air space inverted growth by 180°, burrowing into the substrate; 2) new growth of dorsiventral Blasia, Marchantia, and Ceratopteris gametophytes-whose ventral rhizoids initially penetrated agar substrate and dorsal surfaces initially faced overlying airspace-twisted 180° so that ventral surfaces bearing rhizoids faced overlying air space and rhizoids extended into the air; and 3) Coleochaete lost typical dorsiventral organization and diagnostic dorsal hairs. Direction of illumination also exerted stronger control over orientation of liverwort new growth than surface contact did. These results indicate that early land plants likely inherited light-directed gametophyte body orientation from ancestral streptophyte algae and suggest a mechanism for reorientation of gametophyte-dominant land plants after spatial disturbance.

  9. Biomass production on marginal lands - catalogue of bioenergy crops

    NASA Astrophysics Data System (ADS)

    Baumgarten, Wibke; Ivanina, Vadym; Hanzhenko, Oleksandr

    2017-04-01

    Marginal lands are the poorest type of land, with various limitations for traditional agriculture. However, they can be used for biomass production for bioenergy based on perennial plants or trees. The main advantage of biomass as an energy source compared to fossil fuels is the positive influence on the global carbon dioxide balance in the atmosphere. During combustion of biofuels, less carbon dioxide is emitted than is absorbed by plants during photosynthesis. Besides, 20 to 30 times less sulphur oxide and 3 to 4 times less ash is formed as compared with coal. Growing bioenergy crops creates additional workplaces in rural areas. Soil and climatic conditions of most European regions are suitable for growing perennial energy crops that are capable of rapid transforming solar energy into energy-intensive biomass. Selcted plants are not demanding for soil fertility, do not require a significant amount of fertilizers and pesticides and can be cultivated, therefore, also on unproductive lands of Europe. They prevent soil erosion, contribute to the preservation and improvement of agroecosystems and provide low-cost biomass. A catalogue of potential bioenergy plants was developed within the EU H2020 project SEEMLA including woody and perennial crops that are allowed to be grown in the territory of the EU and Ukraine. The catalogue lists high-productive woody and perennial crops that are not demanding to the conditions of growing and can guarantee stable high yields of high-energy-capacity biomass on marginal lands of various categories of marginality. Biomass of perennials plants and trees is composed of cellulose, hemicellulose and lignin, which are directly used to produce solid biofuels. Thanks to the well-developed root system of trees and perennial plants, they are better adapted to poor soils and do not require careful maintenance. Therefore, they can be grown on marginal lands. Particular C4 bioenergy crops are well adapted to a lack of moisture and high

  10. A study of the early detection of insect infestations and density/distribution of host plants

    NASA Technical Reports Server (NTRS)

    Hart, W. G.; Ingle, S. J.; Davis, M. R. (Principal Investigator)

    1974-01-01

    The author has identified the following significant results. Significant results have been obtained in the identification of citrus, sugarcane, winter vegetables, irrigated pastures, and unimproved pastures which contain brush. Land without vegetation, lakes, roads, and waterways can also be determined. Different densities of vegetation covering some cultivated areas are apparent. The practical applications of these results are many. The abundance of host plants of pests can be determined. Avenues of entry of pests can be plotted, facilitating control or preventing entry of pest species. The boundaries of areas to be quarantined can be accurately established after viewing the S-190B data. Better cultural methods can be employed such as planning where to plant certain crops that indirectly are detrimental to those already growing. This would relate to such factors as pesticide drift or alternate hosts of major pests.

  11. Solar geoengineering, atmospheric water vapor transport, and land plants

    NASA Astrophysics Data System (ADS)

    Caldeira, Ken; Cao, Long

    2015-04-01

    This work, using the GeoMIP database supplemented by additional simulations, discusses how solar geoengineering, as projected by the climate models, affects temperature and the hydrological cycle, and how this in turn is related to projected changes in net primary productivity (NPP). Solar geoengineering simulations typically exhibit reduced precipitation. Solar geoengineering reduces precipitation because solar geoengineering reduces evaporation. Evaporation precedes precipitation, and, globally, evaporation equals precipitation. CO2 tends to reduce evaporation through two main mechanisms: (1) CO2 tends to stabilize the atmosphere especially over the ocean, leading to a moister atmospheric boundary layer over the ocean. This moistening of the boundary layer suppresses evaporation. (2) CO2 tends to diminish evapotranspiration, at least in most land-surface models, because higher atmospheric CO2 concentrations allow leaves to close their stomata and avoid water loss. In most high-CO2 simulations, these effects of CO2 which tend to suppress evaporation are masked by the tendency of CO2-warming effect to increase evaporation. In a geoengineering simulation, with the warming effect of CO2 largely offset by the solar geoengineering, the evaporation suppressing characteristics of CO2 are no longer masked and are clearly exhibited. Decreased precipitation in solar geoengineering simulations is a bit like ocean acidification - an effect of high CO2 concentrations that is not offset by solar geoengineering. Locally, precipitation ultimately either evaporates (much of that through the leaves of plants) or runs off through groundwater to streams and rivers. On long time scales, runoff equals precipitation minus evaporation, and thus, water runoff generated at a location is equal to the net atmospheric transport of water to that location. Runoff typically occurs where there is substantial soil moisture, at least seasonally. Locations where there is enough water to maintain

  12. Patterns of plant diversity loss and species turnover resulting from land abandonment and intensification in semi-natural grasslands.

    PubMed

    Uchida, Kei; Koyanagi, Tomoyo F; Matsumura, Toshikazu; Koyama, Asuka

    2018-07-15

    Land-use changes cause biodiversity loss in semi-natural ecosystems worldwide. Biotic homogenization has led to biodiversity loss, mainly through declines in species composition turnover. Elucidating patterns of turnover in species composition could enhance our understanding of how anthropogenic activities affect community assembly. Here, we focused on whether the decreasing patterns in plant diversity and turnover of species composition resulting from land-use change vary in two regions. We estimated the species diversity and composition of semi-natural grasslands surrounding paddy fields in satoyama landscapes. We examined the differences in species diversity and composition across three land-use types (abandoned, traditional, and intensified) in two regions (Hyogo and Niigata Prefectures, Japan), which were characterized by different climatic conditions. We then assessed alpha-, beta-, and gamma-diversity to compare the patterns of diversity losses in the two regions as a result of land-use changes. In each region, gamma-diversity was consistently higher in the traditional sites compared to abandoned or intensified sites. The analyses revealed that most of the beta-diversity in traditional sites differed significantly from those of abandoned and intensified sites in both regions. However, the beta-diversity of total and perennial species did not differ between traditional and abandoned sites in the Hyogo region. We noted that the beta-diversity of total and perennial species in intensified sites was much lower than that in the traditional sites of the Niigata region. Overall, the patterns of alpha- and gamma-diversity loss were similar in both study regions. Although the biotic homogenization was caused by intensified land-use in the Niigata region, this hypothesis did not completely explain the loss of biodiversity in the abandoned sites in the Hyogo region. The present study contributes to the growing body of work investigating changes in biodiversity as a

  13. Assessing the Effects of Land-use Change on Plant Traits, Communities and Ecosystem Functioning in Grasslands: A Standardized Methodology and Lessons from an Application to 11 European Sites

    PubMed Central

    Garnier, Eric; Lavorel, Sandra; Ansquer, Pauline; Castro, Helena; Cruz, Pablo; Dolezal, Jiri; Eriksson, Ove; Fortunel, Claire; Freitas, Helena; Golodets, Carly; Grigulis, Karl; Jouany, Claire; Kazakou, Elena; Kigel, Jaime; Kleyer, Michael; Lehsten, Veiko; Lepš, Jan; Meier, Tonia; Pakeman, Robin; Papadimitriou, Maria; Papanastasis, Vasilios P.; Quested, Helen; Quétier, Fabien; Robson, Matt; Roumet, Catherine; Rusch, Graciela; Skarpe, Christina; Sternberg, Marcelo; Theau, Jean-Pierre; Thébault, Aurélie; Vile, Denis; Zarovali, Maria P.

    2007-01-01

    Background and Aims A standardized methodology to assess the impacts of land-use changes on vegetation and ecosystem functioning is presented. It assumes that species traits are central to these impacts, and is designed to be applicable in different historical, climatic contexts and local settings. Preliminary results are presented to show its applicability. Methods Eleven sites, representative of various types of land-use changes occurring in marginal agro-ecosystems across Europe and Israel, were selected. Climatic data were obtained at the site level; soil data, disturbance and nutrition indices were described at the plot level within sites. Sixteen traits describing plant stature, leaf characteristics and reproductive phase were recorded on the most abundant species of each treatment. These data were combined with species abundance to calculate trait values weighed by the abundance of species in the communities. The ecosystem properties selected were components of above-ground net primary productivity and decomposition of litter. Key Results The wide variety of land-use systems that characterize marginal landscapes across Europe was reflected by the different disturbance indices, and were also reflected in soil and/or nutrient availability gradients. The trait toolkit allowed us to describe adequately the functional response of vegetation to land-use changes, but we suggest that some traits (vegetative plant height, stem dry matter content) should be omitted in studies involving mainly herbaceous species. Using the example of the relationship between leaf dry matter content and above-ground dead material, we demonstrate how the data collected may be used to analyse direct effects of climate and land use on ecosystem properties vs. indirect effects via changes in plant traits. Conclusions This work shows the applicability of a set of protocols that can be widely applied to assess the impacts of global change drivers on species, communities and ecosystems. PMID

  14. Development of a 3D Soil-Plant-Atmosphere Continuum (SPAC) coupled to a Land Surface Model

    NASA Astrophysics Data System (ADS)

    Bisht, G.; Riley, W. J.; Lorenzetti, D.; Tang, J.

    2015-12-01

    Exchange of water between the atmosphere and biosphere via evapotranspiration (ET) influences global hydrological, energy, and biogeochemical cycles. Isotopic analysis has shown that evapotranspiration over the continents is largely dominated by transpiration. Water is taken up from soil by plant roots, transported through the plant's vascular system, and evaporated from the leaves. Yet current Land Surface Models (LSMs) integrated into Earth System Models (ESMs) treat plant roots as passive components. These models distribute the ET sink vertically over the soil column, neglect the vertical pressure distribution along the plant vascular system, and assume that leaves can directly access water from any soil layer within the root zone. Numerous studies have suggested that increased warming due to climate change will lead drought and heat-induced tree mortality. A more mechanistic treatment of water dynamics in the soil-plant-atmosphere continuum (SPAC) is essential for investigating the fate of ecosystems under a warmer climate. In this work, we describe a 3D SPAC model that can be coupled to a LSM. The SPAC model uses the variably saturated Richards equations to simulate water transport. The model uses individual governing equations and constitutive relationships for the various SPAC components (i.e., soil, root, and xylem). Finite volume spatial discretization and backward Euler temporal discretization is used to solve the SPAC model. The Portable, Extensible Toolkit for Scientific Computation (PETSc) is used to numerically integrate the discretized system of equations. Furthermore, PETSc's multi-physics coupling capability (DMComposite) is used to solve the tightly coupled system of equations of the SPAC model. Numerical results are presented for multiple test problems.

  15. Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls

    PubMed Central

    2014-01-01

    Background Pectins are acidic sugar-containing polysaccharides that are universally conserved components of the primary cell walls of plants and modulate both tip and diffuse cell growth. However, many of their specific functions and the evolution of the genes responsible for producing and modifying them are incompletely understood. The moss Physcomitrella patens is emerging as a powerful model system for the study of plant cell walls. To identify deeply conserved pectin-related genes in Physcomitrella, we generated phylogenetic trees for 16 pectin-related gene families using sequences from ten plant genomes and analyzed the evolutionary relationships within these families. Results Contrary to our initial hypothesis that a single ancestral gene was present for each pectin-related gene family in the common ancestor of land plants, five of the 16 gene families, including homogalacturonan galacturonosyltransferases, polygalacturonases, pectin methylesterases, homogalacturonan methyltransferases, and pectate lyase-like proteins, show evidence of multiple members in the early land plant that gave rise to the mosses and vascular plants. Seven of the gene families, the UDP-rhamnose synthases, UDP-glucuronic acid epimerases, homogalacturonan galacturonosyltransferase-like proteins, β-1,4-galactan β-1,4-galactosyltransferases, rhamnogalacturonan II xylosyltransferases, and pectin acetylesterases appear to have had a single member in the common ancestor of land plants. We detected no Physcomitrella members in the xylogalacturonan xylosyltransferase, rhamnogalacturonan I arabinosyltransferase, pectin methylesterase inhibitor, or polygalacturonase inhibitor protein families. Conclusions Several gene families related to the production and modification of pectins in plants appear to have multiple members that are conserved as far back as the common ancestor of mosses and vascular plants. The presence of multiple members of these families even before the divergence of other

  16. Radiological health risk evaluation of radium contaminated land: a real life implementation.

    PubMed

    Paridaens, J

    2005-01-01

    A plot of land, currently used for dairy farming, has been contaminated over the years with radium due to the operation of one of the world's largest radium production plants. Within the framework of a global remediation approach for the plant surroundings, the land owner needed advice for a future destination of the land. Therefore, the radium contamination was accurately mapped, and on the basis of its severity a practically feasible subdivision of the land into four plots was proposed. For all four plots, the radiological risk was evaluated for the current type of land use and for possible alternative types. Hence a clear and useable advice could be formulated to the authorities reconciling public health, economic and practical issues.

  17. Establishment of warm-season native grasses and forbs on drastically disturbed lands

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Miller, S.

    Establishment of warm-season native grasses and forbs (WSNGs) has been viewed by landowners, agronomists, natural resource managers and reclamation specialists as being too expensive and difficult, especially for reclamation, which requires early stand closure and erosion control. Natural resource managers have learned a great deal about establishing WSNGs since the implementation of the 1985 Farm Bill`s Conservation Reserve Program (CRP). Reclamation specialists must begin to use this information to improve reclamation success. Quality control of seed equipment and planting methods has been proven to be the crucial first step in successful establishment. Seedling germination, growth and development of WSNGs aremore » different from that of introduced cool-season grasses and legumes. Specialized seed drills and spring planting periods are essential. Because shoot growth lags far behind root growth the first two seasons, WSNGs often are rejected for reclamation use. Usually, the rejection is based on preconceived notions that bare ground will erode and on reclamation specialists` desire for a closed, uniform, grassy lawn. WSNG`s extensive root systems inhibit rill and gully erosion by the fall of the first season. Planting a weakly competitive, short-lived nurse crop such as perennial ryegrass (Lolium perenne) at low rates with the WSNG mixture can reduce first-season sheet and rill erosion problems and give an appearance of a closed stand. Benefits of WSNGs in soil building and their acid-tolerance make them ideal species for reclamation of drastically disturbed lands. WSNGs and forbs enhance wildlife habitat and promote natural succession and the invasion of the reclamation site by other native species, particularly hardwood trees, increasing diversity and integrating the site into the local ecosystem. This is perhaps their most important attribute. Most alien grasses and legumes inhibit natural succession, slowing the development of a stable mine soil ecosystem

  18. The Biogeophysical Climatic Impacts of Anthropogenic Land Use Change during the Holocene

    NASA Astrophysics Data System (ADS)

    Smith, Clare; Singarayer, Joy; Valdes, Paul; Kaplan, Jed; Branch, Nicholas

    2016-04-01

    The first agricultural societies were established around 10ka BP and had spread across much of Europe and southern Asia by 5.5ka BP with resultant anthropogenic deforestation for crop and pasture land. Various studies have attempted to assess the biogeochemical implications for Holocene climate in terms of increased carbon dioxide and methane emissions. However, less work has been done to examine the biogeophysical impacts of this early land use change. In this study, global climate model simulations with HadCM3 were used to examine the biogeophysical effects of Holocene land cover change on climate, both globally and regionally, from the early Holocene (8 ka BP) to the early industrial era (1850 CE). Two experiments were performed with alternative descriptions of past vegetation: (i) potential natural vegetation simulated by TRIFFID but no land-use changes, and (ii) where the anthropogenic land use model, KK10 (Kaplan et al., 2009, 2011*) has been used to set the HadCM3 crop regions. Snapshot simulations have been run at 1,000 year intervals to examine when the first signature of anthropogenic climate change can be detected both regionally, in the areas of land use change, and globally. Results indicate that in regions of early land disturbance such as Europe and S.E. Asia detectable temperature changes, outside the normal range of variability, are encountered in the model as early as 7ka BP in the June/July/August (JJA) season and throughout the entire annual cycle by 2-3ka BP. Areas outside the regions of land disturbance are also affected, with virtually the whole globe experiencing significant temperature changes (predominantly cooling) by the early industrial period. Large-scale precipitation features such as the Indian monsoon, the intertropical convergence zone (ITCZ), and the North Atlantic storm track are also impacted by local land use and remote teleconnections. We investigated how advection by surface winds, mean sea level pressure (MSLP) anomalies

  19. A coupled hydrogeophysical modeling approach to estimate soil moisture redistribution in the face of land use changes

    NASA Astrophysics Data System (ADS)

    Kuhl, A.; Hyndman, D. W.; Van Dam, R. L.

    2013-12-01

    Predicting the impacts of land use changes on local water balances requires knowledge of the detailed water uptake dynamics associated with different plants. Mapping the extent of roots and quantifying their relationships to the movement of water through the vadose zone is critical to better understand this aspect of plant physiology. Electrical resistivity (ER) methods offer the ability to non-invasively capture this crucial hydrologic information at relevant scales, bridging the spatial gap between remote sensing and in-situ point measurements. Our research uses a coupled hydrogeophysical model to image the boundary of root zones and the control roots have on hydrologic fluxes. Advantages of this approach include: incorporating basic hydrologic parameters to constrain the model physics and using a forward geophysical model to avoid errors related to non-unique solutions and imaging. The model optimizes root distributions to correlate with soil moisture variability characterized by ER surveys, maximizing the value of the geophysics and yielding information that can answer questions related to water budgets in the face of land use and climate changes. To validate this approach, preliminary ER data was collected from two sites in south-east Michigan instrumented with permanent lines of electrodes, enabling consistent surveys through time. One site traverses a progression of vegetation types over a relatively short distance, reflecting the type of natural plant succession associated with passive land use changes in the area. Early interpretations of the ER results indicate that apparent resistivity is controlled by the varying plant regimes. The other is part of the Great Lakes Bioenergy Research Center, spanning a stand of maize, which is ideal for initial models because root zone development has been extensively researched for this crop.

  20. A high-sensitivity optical device for the early monitoring of plant pathogen attack via the in vivo detection of ROS bursts

    PubMed Central

    Zeng, Lizhang; Zhou, Jun; Li, Bo; Xing, Da

    2015-01-01

    Biotic stressors, especially pathogenic microorganisms, are rather difficult to detect. In plants, one of the earliest cellular responses following pathogen infection is the production of reactive oxygen species (ROS). In this study, a novel optical device for the early monitoring of Pseudomonas attack was developed; this device measures the ROS level via oxidation-sensitive 2′, 7′-dichlorodihydrofluorescein diacetate (H2DCFDA)-mediated fluorescence, which could provide early monitoring of attacks by a range of plant pathogen; ROS bursts were detected in vivo in Arabidopsis thaliana with higher sensitivity and accuracy than those of a commercial luminescence spectrophotometer. Additionally, the DCF fluorescence truly reflected early changes in the ROS level, as indicated by an evaluation of the H2O2 content and the tight association between the ROS and Pseudomonas concentration. Moreover, compared with traditional methods for detecting plant pathogen attacks based on physiological and biochemical measurements, our proposed technique also offers significant advantages, such as low cost, simplicity, convenient operation and quick turnaround. These results therefore suggest that the proposed optical device could be useful for the rapid monitoring of attacks by plant pathogen and yield results considerably earlier than the appearance of visual changes in plant morphology or growth. PMID:25767474

  1. Analysis of polarization characteristics of plant canopies using land-based remote sensing measurements for development of ground truth methods

    NASA Astrophysics Data System (ADS)

    Sidko, Aleksandr; Pisman, Tamara; Botvich, Irina; Shevyrnogov, Anatoly

    In order to develop satellite technology for monitoring of terrestrial plant canopies and land-based optical remote sensing techniques, one should employ new approaches to identifying farmlands and determining the plant species composition. The results present a study on polarized characteristics of spectral reflection factor of plant canopies (forests and farm crop canopies) under field conditions, using optical remote sensing techniques. The polarized components of the reflectance factor and the degree of polarization were calculated. Measurements were performed using a spectrophotometer with a polarized light filter attachment. Measurements were done within the spectral range from 400 to 840 nm. The viewing angle was no greater than 200 with respect to the nadir. Measurements of the polarization characteristics of the vegetation on the test ranges were conducted during June-July month when the height of the sun was at its zenith. Different wavelength dependences of the spectral reflection factor polarized component (Rq) and degree of polarization (P) were found both for the coniferous and broadleaf forests (pine and birch) and for farm crops (wheat and corn) and grass canopies. These differences can be used to determine species composition of plant canopies.

  2. Land Contamination and Soil-Plant Interactions in the Imperina Valley Mine (Belluno, Venetian Region, Italy)

    NASA Astrophysics Data System (ADS)

    Bini, Claudio; Wahsha, Mohammad; Fontana, Silvia; Zilioli, Diana

    2010-05-01

    In Italy, ore exploitation, particularly that of mixed sulphides, has been abandoned since the final thirty years of the last century, and a quantity of mine dumps has been discharged in wide areas of the land, provoking evident environmental damages to landscape, soil and vegetation, with potential risk for human health. The present study concerns the distribution and mobility of heavy metals (Ni, Cr, Cu, Pb, Zn, Fe and Mn) in the soils of a mine site and their transfer to wild flora. Soils and wild plants were sampled from mixed sulphides mine dumps in Imperina valley (Belluno, Italy), and the concentrations of heavy metals were determined. Chemical analyses carried out on 10 soil profiles (mostly entisols) of the mineralised area revealed metal concentrations generally above the international target levels (Cu up to 3160 mg kg-1 , Pb up to 23600 mg kg-1, Zn up to 1588 mg kg-1, Fe up to 52,30 %). The concentrations of Ni, Cr and Mn, instead, are below the reference limits. Moreover, a highly significant correlation was observed between the concentrations of metals in soils (Fe, Pb, Zn and Cu). Metal concentration in selected wild plants of the mineralized area is moderately high, in particolar Cu, Pb, Zn in the roots of Plantago major, Pb and Zn in the leaves of Taraxacum officinale, Zn and Pb in Salix spp. The translocation coefficient (BAC) from soil to plant (hypogean portion), and within the plant (epigean portion) vary from 0,37 in Plantago major to 2,97 in Silene dioica, two known accumulator plants. Salix spp present high translocation coefficients from soil to plant, and from roots to leaves. In particular, essential metals present a translocation coefficient ≥1 (with the order Mn>Zn>Cu>Fe), while toxic metals have coefficients <1 (Pbplant, in relation to their nutritional function. The combined results of metal concentration in soils and plants, BAC and translocation coefficients show

  3. Land Treatment Digital Library

    USGS Publications Warehouse

    Pilliod, David S.

    2009-01-01

    Across the country, public land managers make hundreds of decisions each year that influence landscapes and ecosystems within the lands they manage. Many of these decisions involve vegetation manipulations known as land treatments. Land treatments include activities such as removal or alteration of plant biomass, seeding burned areas, and herbicide applications. Data on these land treatments are usually stored at local offices, and gathering information across large spatial areas can be difficult. There is a need to centralize and store treatment data for Federal agencies involved in land treatments because these data are useful to land managers for policy and management and to scientists for developing sampling designs and studies. The Land Treatment Digital Library (LTDL) was created by the U.S. Geological Survey (USGS) to catalog information about land treatments on Federal lands in the western United States for all interested parties. The flexible framework of the library allows for the storage of a wide variety of data in different formats. The LTDL currently stores previously established land treatments or what often are called legacy data. The project was developed and has been refined based on feedback from partner agencies and stakeholders, with opportunity for the library holdings to expand as new information becomes available. The library contains data in text, tabular, spatial, and image formats. Specific examples include project plans and implementation reports, monitoring data, spatial data files from geographic information systems, digitized paper maps, and digital images of land treatments. The data are entered by USGS employees and are accessible through a searchable web site. The LTDL can be used to respond to information requests, conduct analyses and other forms of information syntheses, produce maps, and generate reports for DOI managers and scientists and other authorized users.

  4. Molecular characters of melon (Cucumismelo L. "Tacapa") in response to karst critical land

    NASA Astrophysics Data System (ADS)

    Rachmawati, Yuanita; Daryono, Budi Setiadi; Aristya, Ganies Riza

    2017-06-01

    Yogyakarta district has 158.600 ha critical land and spread off in three Agro Ecosystem zones. Two of them are karsts critical land. Critical lands which contain calcium carbonate in high concentration and water dehydration in upper surface give abiotic stress in wide range of plant. Melon cultivar TACAPA has superior characteristic derived from parental crossing, ♀ Action 434 and ♂ PI 371795 and potential to be developed in karsts critical land. Abscicic acid (ABA) is a phytohormone expressed by plant in abiotic stress condition. CmBG1 is a gene which regulate ABA hormone in melon. The purposes of this research were examining the molecular character of melon cultivar TACAPA in response to karsts critical land in order to study molecular characterization of CmBG1 gene. Analysis was done qualitatively by using Reverse Transcriptase-PCR (RT-PCR) and Electrophoresis, while quantitative analysis was conducted by observing absorbance score in spectrophotometer. CmBG1 gene expression is examined by using Real time PCR (qPCR). Molecular characters obtained are CmBG1 detected in size ±1258 bp, CmBG1 gene concentrations in melon which planted in control media are lower than melon in critical lands media. These results are similar with the real time quantitative analysis method. It also be revealed that melon TACAPA is more potential plant compared to another cultivar that can be developed in karst critical land area.

  5. Attenuation of municipal landfill leachate through land treatment

    PubMed Central

    2014-01-01

    The treatment of municipal landfill’s leachate is considered as one of the most significant environmental issues. In this study a laboratory experiment was conducted through land treatment, achieving an efficient and economical method by using Vetiver plant. Moreover, the effects of land treatment of leachate of municipal landfills on the natural reduction of organic and inorganic contaminants in the leachate after the pre-treatment in the Aradkouh disposal center are invested. Three pilots including the under-investigation region’s soil planted by Vetiver plant, the region’s intact soil pilot and the artificial composition of the region’s soil including the natural region’s soil, sand, and rock stone are used. The leachate, having passed its initial treatment, passed through the soil and to the pilot. It was collected in the end of the pilots and its organic and inorganic contaminants were measured. However, the land treatment of leachate was conducted in a slow rate at various speeds. According to the results, in order to remove COD, BOD5, TDS, TSS, TOC the best result was obtained in the region’s soil planted with Vetiver plant and at the speed of 0.2 ml per minute which resulted 99.1%, 99.7%, 52.4%, 98.8%, 94.9% removal efficiencies, respectively. It also can be concluded that the higher the organic rate load is, the lower the efficiency of the removal would be. In addition, EC & pH were measured and the best result was obtained in the region’s soil planted with Vetiver plant and at the speed of 0.2 ml/min. PMID:24397862

  6. Cambrian to Devonian evolution of alluvial systems: The sedimentological impact of the earliest land plants

    NASA Astrophysics Data System (ADS)

    Davies, Neil S.; Gibling, Martin R.

    2010-02-01

    In present-day alluvial environments, the impact of vegetation on sedimentological processes and deposits is well known. A vegetated catchment may decrease sediment yield, sediment erodibility, Hortonian overland flow, aeolian winnowing of fines, the proportion of sediment transported as bedload, and may increase bank stability, infiltration into substrates, and bed roughness. Vegetation also promotes the production of chemically-weathered clays and soils and the adoption of a meandering style. It is generally understood that, prior to the evolution of terrestrial vegetation during the Early Palaeozoic, ancient alluvial systems were markedly different from modern systems, with many systems adopting a "sheet-braided" style. This understanding has previously informed the interpretations of many Precambrian pre-vegetation alluvial successions, but there has been relatively little work regarding Early Palaeozoic alluvial successions laid down prior to and during the initial colonization of the Earth's surface by plants. A comprehensive review of 144 Cambrian to Devonian alluvial successions documented in published literature was combined with original field data from 34 alluvial successions across Europe and North America. The study was designed to identify changes in alluvial style during the period that vegetation was evolving and first colonizing alluvial environments. An increase in mudrock proportion and sandstone maturity is apparent, along with a decrease in overall sand grain size through the Early Palaeozoic. These trends suggest that primitive vegetation cover promoted the production and preservation of muds from the mid Ordovician onwards and increased the residence time of sand-grade sediment in alluvial systems. The compilation also enables the first stratigraphic occurrence of certain vegetation-dependent sedimentary features to be pinpointed and related to the evolution of specific palaeobotanical adaptations. The first markedly heterolithic alluvial

  7. Intercontinental dispersal of giant thermophilic ants across the Arctic during early Eocene hyperthermals

    PubMed Central

    Archibald, S. Bruce; Johnson, Kirk R.; Mathewes, Rolf W.; Greenwood, David R.

    2011-01-01

    Early Eocene land bridges allowed numerous plant and animal species to cross between Europe and North America via the Arctic. While many species suited to prevailing cool Arctic climates would have been able to cross throughout much of this period, others would have found dispersal opportunities only during limited intervals when their requirements for higher temperatures were met. Here, we present Titanomyrma lubei gen. et sp. nov. from Wyoming, USA, a new giant (greater than 5 cm long) formiciine ant from the early Eocene (approx. 49.5 Ma) Green River Formation. We show that the extinct ant subfamily Formiciinae is only known from localities with an estimated mean annual temperature of about 20°C or greater, consistent with the tropical ranges of almost all of the largest living ant species. This is, to our knowledge, the first known formiciine of gigantic size in the Western Hemisphere and the first reported cross-Arctic dispersal by a thermophilic insect group. This implies intercontinental migration during one or more brief high-temperature episodes (hyperthermals) sometime between the latest Palaeocene establishment of intercontinental land connections and the presence of giant formiciines in Europe and North America by the early middle Eocene. PMID:21543354

  8. Generation of High Resolution Land Surface Parameters in the Community Land Model

    NASA Astrophysics Data System (ADS)

    Ke, Y.; Coleman, A. M.; Wigmosta, M. S.; Leung, L.; Huang, M.; Li, H.

    2010-12-01

    The Community Land Model (CLM) is the land surface model used for the Community Atmosphere Model (CAM) and the Community Climate System Model (CCSM). It examines the physical, chemical, and biological processes across a variety of spatial and temporal scales. Currently, efforts are being made to improve the spatial resolution of the CLM, in part, to represent finer scale hydrologic characteristics. Current land surface parameters of CLM4.0, in particular plant functional types (PFT) and leaf area index (LAI), are generated from MODIS and calculated at a 0.05 degree resolution. These MODIS-derived land surface parameters have also been aggregated to coarser resolutions (e.g., 0.5, 1.0 degrees). To evaluate the response of CLM across various spatial scales, higher spatial resolution land surface parameters need to be generated. In this study we examine the use of Landsat TM/ETM+ imagery and data fusion techniques for generating land surface parameters at a 1km resolution within the Pacific Northwest United States. . Land cover types and PFTs are classified based on Landsat multi-season spectral information, DEM, National Land Cover Database (NLCD) and the USDA-NASS Crop Data Layer (CDL). For each PFT, relationships between MOD15A2 high quality LAI values, Landsat-based vegetation indices, climate variables, terrain, and laser-altimeter derived vegetation height are used to generate monthly LAI values at a 30m resolution. The high-resolution PFT and LAI data are aggregated to create a 1km model grid resolution. An evaluation and comparison of CLM land surface response at both fine and moderate scale is presented.

  9. Tomato Cutin Deficient 1 (CD1) and putative orthologs comprise an ancient family of cutin synthase-like (CUS) proteins that are conserved among land plants.

    PubMed

    Yeats, Trevor H; Huang, Wenlin; Chatterjee, Subhasish; Viart, Hélène M-F; Clausen, Mads H; Stark, Ruth E; Rose, Jocelyn K C

    2014-03-01

    The aerial epidermis of all land plants is covered with a hydrophobic cuticle that provides essential protection from desiccation, and so its evolution is believed to have been prerequisite for terrestrial colonization. A major structural component of apparently all plant cuticles is cutin, a polyester of hydroxy fatty acids; however, despite its ubiquity, the details of cutin polymeric structure and the mechanisms of its formation and remodeling are not well understood. We recently reported that cutin polymerization in tomato (Solanum lycopersicum) fruit occurs via transesterification of hydroxyacylglycerol precursors, catalyzed by the GDSL-motif lipase/hydrolase family protein (GDSL) Cutin Deficient 1 (CD1). Here, we present additional biochemical characterization of CD1 and putative orthologs from Arabidopsis thaliana and the moss Physcomitrella patens, which represent a distinct clade of cutin synthases within the large GDSL superfamily. We demonstrate that members of this ancient and conserved family of cutin synthase-like (CUS) proteins act as polyester synthases with negligible hydrolytic activity. Moreover, solution-state NMR analysis indicates that CD1 catalyzes the formation of primarily linear cutin oligomeric products in vitro. These results reveal a conserved mechanism of cutin polyester synthesis in land plants, and suggest that elaborations of the linear polymer, such as branching or cross-linking, may require additional, as yet unknown, factors. © 2013 The Authors The Plant Journal © 2013 John Wiley & Sons Ltd.

  10. STS-83 landing views

    NASA Image and Video Library

    2016-08-16

    STS083-S-009 (8 April 1997) --- The Space Shuttle Columbia nears touchdown on the Shuttle Landing Facility (SLF) runway at the Kennedy Space Center (KSC), after completing almost four days of a scheduled 16-day mission in Earth-orbit. A problem with one of three fuel cells led to an early landing for the seven-member Microgravity Science Laboratory 1 (MSL-1) crew. Touchdown occurred at 1:33:11 p.m. (EDT), April 8, 1997. Onboard Columbia were James D. Halsell, Jr., Susan L. Still, Janice E. Voss, Donald A. Thomas, Michael L. Gernhardt, Roger K. Crouch and Gregory T. Linteris.

  11. Getting the jump on Mother nature: the advancing technology of applied botany will speed reclamation of mined land

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Not Available

    By propagating native or indigenous plants in greenhouses on a speeded-up schedule, much guesswork is being taken out of revegetating mined land. Native Plants Inc., which tricks nature by reproducing the biological sequence of plants in a fraction of the natural time, offers reclaimers of disturbed land the plants they want in any quantity on very short notice. Prior to planting, seeds are treated to break their dormancy code. The plants are grown in tubepaks that promote root growth, grow both night and day, and have CO/sub 2/ injected into the air. The company reports a 97% success rate inmore » transplanting its seedlings. Cloning and the unlocking of the germination secrets of plants have great potential for speeding the restoration of mined land. A micropropagation (or tissue culture), whereby parts of a whole plant are removed, sterilized, and grown on a specific nutrient medium are being considered. This technology affords a high degree of selectivity and rapid plant propagation and has far-reaching implications for mine operators faced with the challenges of reclaiming mined land. (DP)« less

  12. Angiosperms Are Unique among Land Plant Lineages in the Occurrence of Key Genes in the RNA-Directed DNA Methylation (RdDM) Pathway

    PubMed Central

    Ma, Lu; Hatlen, Andrea; Kelly, Laura J.; Becher, Hannes; Wang, Wencai; Kovarik, Ales; Leitch, Ilia J.; Leitch, Andrew R.

    2015-01-01

    The RNA-directed DNA methylation (RdDM) pathway can be divided into three phases: 1) small interfering RNA biogenesis, 2) de novo methylation, and 3) chromatin modification. To determine the degree of conservation of this pathway we searched for key genes among land plants. We used OrthoMCL and the OrthoMCL Viridiplantae database to analyze proteomes of species in bryophytes, lycophytes, monilophytes, gymnosperms, and angiosperms. We also analyzed small RNA size categories and, in two gymnosperms, cytosine methylation in ribosomal DNA. Six proteins were restricted to angiosperms, these being NRPD4/NRPE4, RDM1, DMS3 (defective in meristem silencing 3), SHH1 (SAWADEE homeodomain homolog 1), KTF1, and SUVR2, although we failed to find the latter three proteins in Fritillaria persica, a species with a giant genome. Small RNAs of 24 nt in length were abundant only in angiosperms. Phylogenetic analyses of Dicer-like (DCL) proteins showed that DCL2 was restricted to seed plants, although it was absent in Gnetum gnemon and Welwitschia mirabilis. The data suggest that phases (1) and (2) of the RdDM pathway, described for model angiosperms, evolved with angiosperms. The absence of some features of RdDM in F. persica may be associated with its large genome. Phase (3) is probably the most conserved part of the pathway across land plants. DCL2, involved in virus defense and interaction with the canonical RdDM pathway to facilitate methylation of CHH, is absent outside seed plants. Its absence in G. gnemon, and W. mirabilis coupled with distinctive patterns of CHH methylation, suggest a secondary loss of DCL2 following the divergence of Gnetales. PMID:26338185

  13. Land use in mountain grasslands alters drought response and recovery of carbon allocation and plant-microbial interactions.

    PubMed

    Karlowsky, Stefan; Augusti, Angela; Ingrisch, Johannes; Hasibeder, Roland; Lange, Markus; Lavorel, Sandra; Bahn, Michael; Gleixner, Gerd

    2018-05-01

    Mountain grasslands have recently been exposed to substantial changes in land use and climate and in the near future will likely face an increased frequency of extreme droughts. To date, how the drought responses of carbon (C) allocation, a key process in the C cycle, are affected by land-use changes in mountain grassland is not known.We performed an experimental summer drought on an abandoned grassland and a traditionally managed hay meadow and traced the fate of recent assimilates through the plant-soil continuum. We applied two 13 CO 2 pulses, at peak drought and in the recovery phase shortly after rewetting.Drought decreased total C uptake in both grassland types and led to a loss of above-ground carbohydrate storage pools. The below-ground C allocation to root sucrose was enhanced by drought, especially in the meadow, which also held larger root carbohydrate storage pools.The microbial community of the abandoned grassland comprised more saprotrophic fungal and Gram(+) bacterial markers compared to the meadow. Drought increased the newly introduced AM and saprotrophic (A+S) fungi:bacteria ratio in both grassland types. At peak drought, the 13 C transfer into AM and saprotrophic fungi, and Gram(-) bacteria was more strongly reduced in the meadow than in the abandoned grassland, which contrasted the patterns of the root carbohydrate pools.In both grassland types, the C allocation largely recovered after rewetting. Slowest recovery was found for AM fungi and their 13 C uptake. In contrast, all bacterial markers quickly recovered C uptake. In the meadow, where plant nitrate uptake was enhanced after drought, C uptake was even higher than in control plots. Synthesis . Our results suggest that resistance and resilience (i.e. recovery) of plant C dynamics and plant-microbial interactions are negatively related, that is, high resistance is followed by slow recovery and vice versa. The abandoned grassland was more resistant to drought than the meadow and possibly had a

  14. SOUTHWEST REGIONAL GAP LAND COVER

    EPA Science Inventory

    The Gap Analysis Program is a national inter-agency program that maps the distribution

    of plant communities and selected animal species and compares these distributions with land

    stewardship to identify gaps in biodiversity protection. GAP uses remote satellite imag...

  15. A Land-Plant-Specific Glycerol-3-Phosphate Acyltransferase Family in Arabidopsis: Substrate Specificity, sn-2 Preference, and Evolution1[W][OA

    PubMed Central

    Yang, Weili; Simpson, Jeffrey P.; Li-Beisson, Yonghua; Beisson, Fred; Pollard, Mike; Ohlrogge, John B.

    2012-01-01

    Arabidopsis (Arabidopsis thaliana) has eight glycerol-3-phosphate acyltransferase (GPAT) genes that are members of a plant-specific family with three distinct clades. Several of these GPATs are required for the synthesis of cutin or suberin. Unlike GPATs with sn-1 regiospecificity involved in membrane or storage lipid synthesis, GPAT4 and -6 are unique bifunctional enzymes with both sn-2 acyltransferase and phosphatase activity resulting in 2-monoacylglycerol products. We present enzymology, pathway organization, and evolutionary analysis of this GPAT family. Within the cutin-associated clade, GPAT8 is demonstrated as a bifunctional sn-2 acyltransferase/phosphatase. GPAT4, -6, and -8 strongly prefer C16:0 and C18:1 ω-oxidized acyl-coenzyme As (CoAs) over unmodified or longer acyl chain substrates. In contrast, suberin-associated GPAT5 can accommodate a broad chain length range of ω-oxidized and unsubstituted acyl-CoAs. These substrate specificities (1) strongly support polyester biosynthetic pathways in which acyl transfer to glycerol occurs after oxidation of the acyl group, (2) implicate GPAT specificities as one major determinant of cutin and suberin composition, and (3) argue against a role of sn-2-GPATs (Enzyme Commission 2.3.1.198) in membrane/storage lipid synthesis. Evidence is presented that GPAT7 is induced by wounding, produces suberin-like monomers when overexpressed, and likely functions in suberin biosynthesis. Within the third clade, we demonstrate that GPAT1 possesses sn-2 acyltransferase but not phosphatase activity and can utilize dicarboxylic acyl-CoA substrates. Thus, sn-2 acyltransferase activity extends to all subbranches of the Arabidopsis GPAT family. Phylogenetic analyses of this family indicate that GPAT4/6/8 arose early in land-plant evolution (bryophytes), whereas the phosphatase-minus GPAT1 to -3 and GPAT5/7 clades diverged later with the appearance of tracheophytes. PMID:22864585

  16. Arid lands of the Southwest

    USGS Publications Warehouse

    Saiki, M.; Scoppettone, G.G.; Gadomski, D.; Becker, D.

    2005-01-01

    When thinking about plants and animals that inhabit hot arid lands of the southwestern U.S., fish are easily overlooked by most people. However, these desert lands often contain isolated springs or cienegas (a Spanish term referring to permanently saturated 'seep wetlands') and streams supporting native fishes that occur no where else in the world. These aquatic remnants from the last Ice Age have survived for thousands of years due to an amazing ability to tolerate harsh environmental conditions, especially extremely high water temperatures, high salinities, and unpredictable water flows.

  17. A multitemporal (1979-2009) land-use/land-cover dataset of the binational Santa Cruz Watershed

    USGS Publications Warehouse

    2011-01-01

    Trends derived from multitemporal land-cover data can be used to make informed land management decisions and to help managers model future change scenarios. We developed a multitemporal land-use/land-cover dataset for the binational Santa Cruz watershed of southern Arizona, United States, and northern Sonora, Mexico by creating a series of land-cover maps at decadal intervals (1979, 1989, 1999, and 2009) using Landsat Multispectral Scanner and Thematic Mapper data and a classification and regression tree classifier. The classification model exploited phenological changes of different land-cover spectral signatures through the use of biseasonal imagery collected during the (dry) early summer and (wet) late summer following rains from the North American monsoon. Landsat images were corrected to remove atmospheric influences, and the data were converted from raw digital numbers to surface reflectance values. The 14-class land-cover classification scheme is based on the 2001 National Land Cover Database with a focus on "Developed" land-use classes and riverine "Forest" and "Wetlands" cover classes required for specific watershed models. The classification procedure included the creation of several image-derived and topographic variables, including digital elevation model derivatives, image variance, and multitemporal Kauth-Thomas transformations. The accuracy of the land-cover maps was assessed using a random-stratified sampling design, reference aerial photography, and digital imagery. This showed high accuracy results, with kappa values (the statistical measure of agreement between map and reference data) ranging from 0.80 to 0.85.

  18. Historical Landsat data comparisons: illustrations of land surface change

    USGS Publications Warehouse

    Cross, Matthew D.

    1990-01-01

    This booklet provides an overview of the Landsat program and shows the application of the data to monitor changes occurring on the surface of the Earth. To show changes that have taken place within the last 20 years or less, image pairs were constructed from the Landsat multispectral scanner (MSS) and thematic mapper (TM) sensors. Landsat MSS data provide a historical global record of the land surface from the early 1970's to present. Landsat TM data provide land surface information from the early 1980's to present.

  19. A porin-like protein from oral secretions of Spodoptera littoralis larvae induces defense-related early events in plant leaves.

    PubMed

    Guo, Huijuan; Wielsch, Natalie; Hafke, Jens B; Svatoš, Aleš; Mithöfer, Axel; Boland, Wilhelm

    2013-09-01

    Insect herbivory on plants is a complex incident consisting of at least two different aspects, namely mechanical damage and chemical challenge, as feeding insects introduce oral secretions (OS) into the wounded tissue of the attacked plant. Mechanical wounding alone is sufficient to induce a set of defense-related reactions in host plants, but some early events such as membrane potential (Vm) changes and cytosolic Ca²⁺-elevations can be triggered only by herbivores suggesting that OS-derived molecules are involved in those processes. Following an assay-guided purification based on planar lipid bilayer membrane technique in combination with proteomic analysis, a porin-like protein (PLP) of most likely bacterial origin was determined from collected OS of Spodoptera littoralis larvae. PLP exhibited channel-forming activity. Further, early defense-related events in plant-insect interaction were evaluated by using a purified fraction and α-hemolysin (α-HL) as a commercial pore-forming compound. Both up-regulated the calmodulin-like CML42 in Arabidopsis thaliana, which only responds to oral secretion and not to wounding. An elevation of in vivo [Ca²⁺](cyt) was not observed. Because membrane channel formation is a widespread phenomenon in plant-insect interactions, this PLP might represent an example for microbial compounds from the insect gut which are initially involved in plant-insect interactions. Copyright © 2013 Elsevier Ltd. All rights reserved.

  20. Land Surface Phenology from MODIS: Characterization of the Collection 5 Global Land Cover Dynamics Product

    NASA Technical Reports Server (NTRS)

    Ganguly, Sangram; Friedl, Mark A.; Tan, Bin; Zhang, Xiaoyang; Verma, Manish

    2010-01-01

    Information related to land surface phenology is important for a variety of applications. For example, phenology is widely used as a diagnostic of ecosystem response to global change. In addition, phenology influences seasonal scale fluxes of water, energy, and carbon between the land surface and atmosphere. Increasingly, the importance of phenology for studies of habitat and biodiversity is also being recognized. While many data sets related to plant phenology have been collected at specific sites or in networks focused on individual plants or plant species, remote sensing provides the only way to observe and monitor phenology over large scales and at regular intervals. The MODIS Global Land Cover Dynamics Product was developed to support investigations that require regional to global scale information related to spatiotemporal dynamics in land surface phenology. Here we describe the Collection 5 version of this product, which represents a substantial refinement relative to the Collection 4 product. This new version provides information related to land surface phenology at higher spatial resolution than Collection 4 (500-m vs. 1-km), and is based on 8-day instead of 16-day input data. The paper presents a brief overview of the algorithm, followed by an assessment of the product. To this end, we present (1) a comparison of results from Collection 5 versus Collection 4 for selected MODIS tiles that span a range of climate and ecological conditions, (2) a characterization of interannual variation in Collections 4 and 5 data for North America from 2001 to 2006, and (3) a comparison of Collection 5 results against ground observations for two forest sites in the northeastern United States. Results show that the Collection 5 product is qualitatively similar to Collection 4. However, Collection 5 has fewer missing values outside of regions with persistent cloud cover and atmospheric aerosols. Interannual variability in Collection 5 is consistent with expected ranges of

  1. Phased Restoration Plan for Degraded Land in North Korea by the Clustered Distribution Pattern of Suitable Afforestation Plants

    NASA Astrophysics Data System (ADS)

    Lee, S. G.; Lee, W. K.; Choi, H. A.; Yoo, H.; Song, C.; Son, Y.; Cha, S.; Bae, S. W.

    2017-12-01

    Degraded forest of North Korea (DPRK; The Democratic People's Republic of Koprea) is not only confined itself, it could cause serious problem in Korean Peninsula. The importance of restoration for degraded land has increased to improve an healthy ecosystem and solve a shortage of food in North Korea lately. On the other hand, although effort of North Korea government, degraded problem have consistently got worse. There are two main reasons it does not show effectively. The most critical one is absence of technique and information to restore, they concentrate urgent problem which is related to a poor food supply. The other problem is that they demand an efficiency plan in a short period. In these aspect, this study aims selecting suitable tree by spatial characteristics and establishing phased restoration plan to support policy decision about a degraded land in North Korea. The suitable tree for restoration is taken from references which involve natural plant distribution of North and South Korea (ROK; Republic of Korea). Optimal environmental predicted map is deducted from accumulated data of plant physiology whose endemic environmental optimal range individually. It is integrated a map by order of priorities that first is suitable tree species according to the region, and second is clustering distribution rate in a same species. The two types of priority is applied to weighting method. The research result shows that 23 afforestation species fit to restore, and lager distributed plants agree with the major species in Korean Peninsula. The integrated map considers weight of priorities, and it appears that Picea jezoensis is matched the widest. The integrated map shows a view of suitable restoration according to the space, but this is finespun to utilize in a policy. Therefore It provides 3 step plan to support policy decision by Block Statistics, as 12.5km (long-term general plan), 5km (medium-term detailed plan), 1km (short-term implementation plan).

  2. Evaluation of plant biomass resources available for replacement of fossil oil

    PubMed Central

    Henry, Robert J

    2010-01-01

    The potential of plants to replace fossil oil was evaluated by considering the scale of production required, the area of land needed and the types of plants available. High yielding crops (50 tonnes/ha) that have a high conversion efficiency (75%) would require a global land footprint of around 100 million ha to replace current (2008) oil consumption. Lower yielding or less convertible plants would require a larger land footprint. Domestication of new species as dedicated energy crops may be necessary. A systematic analysis of higher plants and their current and potential uses is presented. Plant biotechnology provides tools to improve the prospects of replacing oil with plant-derived biomass by increasing the amount of biomass produced per unit area of land and improving the composition of the biomass to increase the efficiency of conversion to biofuel and biomaterials. Options for the production of high value coproducts and the expression of processing aids such as enzymes in the plant may add further value to plants as bioenergy resources. PMID:20070873

  3. Chemodiversity in Selaginella: a reference system for parallel and convergent metabolic evolution in terrestrial plants

    PubMed Central

    Weng, Jing-Ke; Noel, Joseph P.

    2013-01-01

    Early plants began colonizing the terrestrial earth approximately 450 million years ago. Their success on land has been partially attributed to the evolution of specialized metabolic systems from core metabolic pathways, the former yielding structurally and functionally diverse chemicals to cope with a myriad of biotic and abiotic ecological pressures. Over the past two decades, functional genomics, primarily focused on flowering plants, has begun cataloging the biosynthetic players underpinning assorted classes of plant specialized metabolites. However, the molecular mechanisms enriching specialized metabolic pathways during land plant evolution remain largely unexplored. Selaginella is an extant lycopodiophyte genus representative of an ancient lineage of tracheophytes. Notably, the lycopodiophytes diverged from euphyllophytes over 400 million years ago. The recent completion of the whole-genome sequence of an extant lycopodiophyte, S. moellendorffii, provides new genomic and biochemical resources for studying metabolic evolution in vascular plants. 400 million years of independent evolution of lycopodiophytes and euphyllophytes resulted in numerous metabolic traits confined to each lineage. Surprisingly, a cadre of specialized metabolites, generally accepted to be restricted to seed plants, have been identified in Selaginella. Initial work suggested that Selaginella lacks obvious catalytic homologs known to be involved in the biosynthesis of well-studied specialized metabolites in seed plants. Therefore, these initial functional analyses suggest that the same chemical phenotypes arose independently more commonly than anticipated from our conventional understanding of the evolution of metabolism. Notably, the emergence of analogous and homologous catalytic machineries through convergent and parallel evolution, respectively, seems to have occurred repeatedly in different plant lineages. PMID:23717312

  4. Alabama invasive plant council: list of invasive plants by cultural use categories

    Treesearch

    James H. Miller; Nancy J. Loewenstein; Curtis J. Hansen

    2006-01-01

    Shortly after formation of the Alabama Invasive Plant Council (ALIPC) in 2003, a committee dedicated to assessment and listing of invasive plants was convened – the ALIPC Invasive Plant Listing Committee. Committee members were drawn from the wide diversity of expertise of the Council, which welcomes participation by all land-use and water-use managers, owners,...

  5. What are the best seed sources for ecosystem restoration on BLM and USFS lands?

    Treesearch

    Larry Stritch; Peggy Olwell; Scott Lambert; Matthew E. Horning; Richard Cronn

    2010-01-01

    Native plant restoration policy calls for use of "genetically appropriate" native plant material on USDI Bureau of Land Management (BLM) and USDA Forest Service (USFS) lands. In this article, we summarize experimental evidence showing that local adaptation is widespread in all kingdoms of life, and how this "home-field advantage" has been exploited...

  6. Summary and evaluation of the conceptual design study of a potential early commercial MHD power plant (CSPEC)

    NASA Technical Reports Server (NTRS)

    Staiger, P. J.; Penko, P. F.

    1982-01-01

    The conceptual design study of a potential early commercial MHD power plant (CSPEC) is described and the results are summarized. Each of two contractors did a conceptual design of an approximtely 1000 MWe open-cycle MHD/steam plant with oxygen enriched combustion air preheated to an intermediate temperatue in a metallic heat exchanger. The contractors were close in their overall plant efficiency estimates but differed in their capital cost and cost of electricity estimates, primarily because of differences in balance-of-plant material, contingency, and operating and maintenance cost estimates. One contractor concluded that its MHD plant design compared favorably in cost of electricity with conventional coal-fired steam plants. The other contractor is making such a comparison as part of a follow-on study. Each contractor did a preliminary investigation of part-load performance and plant availability. The results of NASA studies investigating the effect of plant size and oxidizer preheat temperature on the performance of CSPEC-type MHD plants are also described. The efficiency of a 1000 MWe plant is about three points higher than of a 200 MWe plant. Preheating to 1600 F gives an efficiency about one and one-half points higher than preheating to 800 F for all plant sizes. For each plant size and preheat temperature there is an oxidizer enrichment level and MHD generator length that gives the highest plant efficiency.

  7. Bumble-bee learning selects for both early and long flowering in food-deceptive plants

    PubMed Central

    Internicola, Antonina I.; Harder, Lawrence D.

    2012-01-01

    Most rewardless orchids engage in generalized food-deception, exhibiting floral traits typical of rewarding species and exploiting the instinctive foraging of pollinators. Generalized food-deceptive (GFD) orchids compete poorly with rewarding species for pollinator services, which may be overcome by flowering early in the growing season when relatively more pollinators are naive and fewer competing plant species are flowering, and/or flowering for extended periods to enhance the chance of pollinator visits. We tested these hypotheses by manipulating flowering time and duration in a natural population of Calypso bulbosa and quantifying pollinator visitation based on pollen removal. Both early and long flowering increased bumble-bee visitation compared with late and brief flowering, respectively. To identify the cause of reduced visitation during late flowering, we tested whether negative experience with C. bulbosa (avoidance learning) and positive experience with a rewarding species, Arctostaphylos uva-ursi, (associative learning) by captive bumble-bees could reduce C. bulbosa's competitiveness. Avoidance learning explained the higher visitation of early- compared with late-flowering C. bulbosa. The resulting pollinator-mediated selection for early flowering may commonly affect GFD orchids, explaining their tendency to flower earlier than rewarding orchids. For dissimilar deceptive and rewarding sympatric species, associative learning may additionally favour early flowering by GFD species. PMID:22090384

  8. Bumble-bee learning selects for both early and long flowering in food-deceptive plants.

    PubMed

    Internicola, Antonina I; Harder, Lawrence D

    2012-04-22

    Most rewardless orchids engage in generalized food-deception, exhibiting floral traits typical of rewarding species and exploiting the instinctive foraging of pollinators. Generalized food-deceptive (GFD) orchids compete poorly with rewarding species for pollinator services, which may be overcome by flowering early in the growing season when relatively more pollinators are naive and fewer competing plant species are flowering, and/or flowering for extended periods to enhance the chance of pollinator visits. We tested these hypotheses by manipulating flowering time and duration in a natural population of Calypso bulbosa and quantifying pollinator visitation based on pollen removal. Both early and long flowering increased bumble-bee visitation compared with late and brief flowering, respectively. To identify the cause of reduced visitation during late flowering, we tested whether negative experience with C. bulbosa (avoidance learning) and positive experience with a rewarding species, Arctostaphylos uva-ursi, (associative learning) by captive bumble-bees could reduce C. bulbosa's competitiveness. Avoidance learning explained the higher visitation of early- compared with late-flowering C. bulbosa. The resulting pollinator-mediated selection for early flowering may commonly affect GFD orchids, explaining their tendency to flower earlier than rewarding orchids. For dissimilar deceptive and rewarding sympatric species, associative learning may additionally favour early flowering by GFD species.

  9. [Effect of high intensity magnetic field on the processes of early growth in plant seeds and development of honeybees].

    PubMed

    Es'kov, E K; Darkov, A V

    2003-01-01

    The influence of magnetic field on the early growth processes in plant seeds and the postembryonic development of honeybees was studied. Some general trends in the effects of magnetic field and differences in the tolerance of plant seeds and developing honeybees to its action were revealed. Some factors that may be responsible for a low reproducibility of magneto-biological effects are discussed.

  10. Urban heat island impacts on plant phenology: intra-urban variability and response to land cover

    NASA Astrophysics Data System (ADS)

    Zipper, Samuel C.; Schatz, Jason; Singh, Aditya; Kucharik, Christopher J.; Townsend, Philip A.; Loheide, Steven P., II

    2016-05-01

    Despite documented intra-urban heterogeneity in the urban heat island (UHI) effect, little is known about spatial or temporal variability in plant response to the UHI. Using an automated temperature sensor network in conjunction with Landsat-derived remotely sensed estimates of start/end of the growing season, we investigate the impacts of the UHI on plant phenology in the city of Madison WI (USA) for the 2012-2014 growing seasons. Median urban growing season length (GSL) estimated from temperature sensors is ˜5 d longer than surrounding rural areas, and UHI impacts on GSL are relatively consistent from year-to-year. Parks within urban areas experience a subdued expression of GSL lengthening resulting from interactions between the UHI and a park cool island effect. Across all growing seasons, impervious cover in the area surrounding each temperature sensor explains >50% of observed variability in phenology. Comparisons between long-term estimates of annual mean phenological timing, derived from remote sensing, and temperature-based estimates of individual growing seasons show no relationship at the individual sensor level. The magnitude of disagreement between temperature-based and remotely sensed phenology is a function of impervious and grass cover surrounding the sensor, suggesting that realized GSL is controlled by both local land cover and micrometeorological conditions.

  11. Satellite Soil Moisture and Water Storage Observations Identify Early and Late Season Water Supply Influencing Plant Growth in the Missouri Watershed

    NASA Astrophysics Data System (ADS)

    A, G.; Velicogna, I.; Kimball, J. S.; Du, J.; Kim, Y.; Colliander, A.; Njoku, E. G.

    2017-12-01

    We employ an array of continuously overlapping global satellite sensor observations including combined surface soil moisture (SM) estimates from SMAP, AMSR-E and AMSR-2, GRACE terrestrial water storage (TWS), and satellite precipitation measurements, to characterize seasonal timing and inter-annual variations of the regional water supply pattern and its associated influence on vegetation growth estimates from MODIS enhanced vegetation index (EVI), AMSR-E/2 vegetation optical depth (VOD) and GOME-2 solar-induced florescence (SIF). Satellite SM is used as a proxy of plant-available water supply sensitive to relatively rapid changes in surface condition, GRACE TWS measures seasonal and inter-annual variations in regional water storage, while precipitation measurements represent the direct water input to the analyzed ecosystem. In the Missouri watershed, we find surface SM variations are the dominant factor controlling vegetation growth following the peak of the growing season. Water supply to growth responds to both direct precipitation inputs and groundwater storage carry-over from prior seasons (winter and spring), depending on land cover distribution and regional climatic condition. For the natural grassland in the more arid central and northwest watershed areas, an early season anomaly in precipitation or surface temperature can have a lagged impact on summer vegetation growth by affecting the surface SM and the underlying TWS supplies. For the croplands in the more humid eastern portions of the watershed, the correspondence between surface SM and plant growth weakens. The combination of these complementary remote-sensing observations provides an effective means for evaluating regional variations in the timing and availability of water supply influencing vegetation growth.

  12. Newly resolved relationships in an early land plant lineage: Bryophyta class Sphagnopsida (peat mosses).

    PubMed

    Shaw, A Jonathan; Cox, Cymon J; Buck, William R; Devos, Nicolas; Buchanan, Alex M; Cave, Lynette; Seppelt, Rodney; Shaw, Blanka; Larraín, Juan; Andrus, Richard; Greilhuber, Johann; Temsch, Eva M

    2010-09-01

    The Sphagnopsida, an early-diverging lineage of mosses (phylum Bryophyta), are morphologically and ecologically unique and have profound impacts on global climate. The Sphagnopsida are currently classified in two genera, Sphagnum (peat mosses) with some 350-500 species and Ambuchanania with one species. An analysis of phylogenetic relationships among species and genera in the Sphagnopsida were conducted to resolve major lineages and relationships among species within the Sphagnopsida. • Phylogenetic analyses of nucleotide sequences from the nuclear, plastid, and mitochondrial genomes (11 704 nucleotides total) were conducted and analyzed using maximum likelihood and Bayesian inference employing seven different substitution models of varying complexity. • Phylogenetic analyses resolved three lineages within the Sphagnopsida: (1) Sphagnum sericeum, (2) S. inretortum plus Ambuchanania leucobryoides, and (3) all remaining species of Sphagnum. Sister group relationships among these three clades could not be resolved, but the phylogenetic results indicate that the highly divergent morphology of A. leucobryoides is derived within the Sphagnopsida rather than plesiomorphic. A new classification is proposed for class Sphagnopsida, with one order (Sphagnales), three families, and four genera. • The Sphagnopsida are an old lineage within the phylum Bryophyta, but the extant species of Sphagnum represent a relatively recent radiation. It is likely that additional species critical to understanding the evolution of peat mosses await discovery, especially in the southern hemisphere.

  13. Pairing FLUXNET sites to validate model representations of land-use/land-cover change

    NASA Astrophysics Data System (ADS)

    Chen, Liang; Dirmeyer, Paul A.; Guo, Zhichang; Schultz, Natalie M.

    2018-01-01

    Land surface energy and water fluxes play an important role in land-atmosphere interactions, especially for the climatic feedback effects driven by land-use/land-cover change (LULCC). These have long been documented in model-based studies, but the performance of land surface models in representing LULCC-induced responses has not been investigated well. In this study, measurements from proximate paired (open versus forest) flux tower sites are used to represent observed deforestation-induced changes in surface fluxes, which are compared with simulations from the Community Land Model (CLM) and the Noah Multi-Parameterization (Noah-MP) land model. Point-scale simulations suggest the CLM can represent the observed diurnal and seasonal changes in net radiation (Rnet) and ground heat flux (G), but difficulties remain in the energy partitioning between latent (LE) and sensible (H) heat flux. The CLM does not capture the observed decreased daytime LE, and overestimates the increased H during summer. These deficiencies are mainly associated with models' greater biases over forest land-cover types and the parameterization of soil evaporation. Global gridded simulations with the CLM show uncertainties in the estimation of LE and H at the grid level for regional and global simulations. Noah-MP exhibits a similar ability to simulate the surface flux changes, but with larger biases in H, G, and Rnet change during late winter and early spring, which are related to a deficiency in estimating albedo. Differences in meteorological conditions between paired sites is not a factor in these results. Attention needs to be devoted to improving the representation of surface heat flux processes in land models to increase confidence in LULCC simulations.

  14. Growth responses of Phragmites karka - a candidate for second generation biofuel from degraded saline lands

    NASA Astrophysics Data System (ADS)

    Zaheer Ahmed, Muhammad; Shoukat, Erum; Abideen, Zainul; Aziz, Irfan; Gulzar, Salman; Ajmal Khan, M.

    2017-04-01

    following order: root > senesced leaves > young leaves. Moreover, plants maintained nutrient homeostasis (K+, Ca++, Mg++, NO-) by selective uptake via root and transport towards leaf. Moderate salinity increased instantaneous carboxylation efficiency and water use efficiency with stomatal density and smaller pore size compared to control which supported unchanged photosynthetic rate by protecting light harvesting machinery. Low photosynthetic rate in early phase of higher salinity was related to reduced stomatal conductance, while in later phase (15-30 days) due to decreased carboxylation efficiency, effective quantum yield and Fv/Fm (at noon). In conclusion, organ specific responses to short and long term exposure in moderate salinity ensures successful plant survival, whereas long term exposure tohigh salinitywas toxic for plant growth. It is recommended that P. karka could be grown as a biofuel crop on marginally saline and degraded lands.

  15. [Geostatistics analyzing to cause of formation of circle distribution of plant communities in Horqin Sandy Land].

    PubMed

    He, Xingdong; Gao, Yubao; Zhao, Wenzhi; Cong, Zili

    2004-09-01

    Investigation results in the present study showed that plant communities took typical concentric circles distribution patterns along habitat gradient from top, slope to interdune on a few large fixed dunes in middle part of Korqin Sandy Land. In order to explain this phenomenon, analysis of water content and its spatial heterogeneity in sand layers on different locations of dunes was conducted. In these dunes, water contents in sand layers of the tops were lower than those of the slopes; both of them were lower than those of the interdunes. According to the results of geostatistics analysis, whether shifting dune or fixed dune, spatial heterogeneity of water contents in sand layers took on regular changes, such as ratios between nugget and sill and ranges reduced gradually, fractal dimension increased gradually, the regular changes of these parameters indicated that random spatial heterogeneity reduced gradually, and autocorrelation spatial heterogeneity increased gradually from the top, the slope to the interdune. The regular changes of water contents in sand layers and their spatial heterogeneity of different locations of the dunes, thus, might be an important cause resulted in the formation of the concentric circles patterns of the plant communities on these fixed dunes.

  16. Angiosperms Are Unique among Land Plant Lineages in the Occurrence of Key Genes in the RNA-Directed DNA Methylation (RdDM) Pathway.

    PubMed

    Ma, Lu; Hatlen, Andrea; Kelly, Laura J; Becher, Hannes; Wang, Wencai; Kovarik, Ales; Leitch, Ilia J; Leitch, Andrew R

    2015-09-02

    The RNA-directed DNA methylation (RdDM) pathway can be divided into three phases: 1) small interfering RNA biogenesis, 2) de novo methylation, and 3) chromatin modification. To determine the degree of conservation of this pathway we searched for key genes among land plants. We used OrthoMCL and the OrthoMCL Viridiplantae database to analyze proteomes of species in bryophytes, lycophytes, monilophytes, gymnosperms, and angiosperms. We also analyzed small RNA size categories and, in two gymnosperms, cytosine methylation in ribosomal DNA. Six proteins were restricted to angiosperms, these being NRPD4/NRPE4, RDM1, DMS3 (defective in meristem silencing 3), SHH1 (SAWADEE homeodomain homolog 1), KTF1, and SUVR2, although we failed to find the latter three proteins in Fritillaria persica, a species with a giant genome. Small RNAs of 24 nt in length were abundant only in angiosperms. Phylogenetic analyses of Dicer-like (DCL) proteins showed that DCL2 was restricted to seed plants, although it was absent in Gnetum gnemon and Welwitschia mirabilis. The data suggest that phases (1) and (2) of the RdDM pathway, described for model angiosperms, evolved with angiosperms. The absence of some features of RdDM in F. persica may be associated with its large genome. Phase (3) is probably the most conserved part of the pathway across land plants. DCL2, involved in virus defense and interaction with the canonical RdDM pathway to facilitate methylation of CHH, is absent outside seed plants. Its absence in G. gnemon, and W. mirabilis coupled with distinctive patterns of CHH methylation, suggest a secondary loss of DCL2 following the divergence of Gnetales. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  17. A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region

    PubMed Central

    Kress, W. John; Erickson, David L.

    2007-01-01

    Background A useful DNA barcode requires sufficient sequence variation to distinguish between species and ease of application across a broad range of taxa. Discovery of a DNA barcode for land plants has been limited by intrinsically lower rates of sequence evolution in plant genomes than that observed in animals. This low rate has complicated the trade-off in finding a locus that is universal and readily sequenced and has sufficiently high sequence divergence at the species-level. Methodology/Principal Findings Here, a global plant DNA barcode system is evaluated by comparing universal application and degree of sequence divergence for nine putative barcode loci, including coding and non-coding regions, singly and in pairs across a phylogenetically diverse set of 48 genera (two species per genus). No single locus could discriminate among species in a pair in more than 79% of genera, whereas discrimination increased to nearly 88% when the non-coding trnH-psbA spacer was paired with one of three coding loci, including rbcL. In silico trials were conducted in which DNA sequences from GenBank were used to further evaluate the discriminatory power of a subset of these loci. These trials supported the earlier observation that trnH-psbA coupled with rbcL can correctly identify and discriminate among related species. Conclusions/Significance A combination of the non-coding trnH-psbA spacer region and a portion of the coding rbcL gene is recommended as a two-locus global land plant barcode that provides the necessary universality and species discrimination. PMID:17551588

  18. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region.

    PubMed

    Kress, W John; Erickson, David L

    2007-06-06

    A useful DNA barcode requires sufficient sequence variation to distinguish between species and ease of application across a broad range of taxa. Discovery of a DNA barcode for land plants has been limited by intrinsically lower rates of sequence evolution in plant genomes than that observed in animals. This low rate has complicated the trade-off in finding a locus that is universal and readily sequenced and has sufficiently high sequence divergence at the species-level. Here, a global plant DNA barcode system is evaluated by comparing universal application and degree of sequence divergence for nine putative barcode loci, including coding and non-coding regions, singly and in pairs across a phylogenetically diverse set of 48 genera (two species per genus). No single locus could discriminate among species in a pair in more than 79% of genera, whereas discrimination increased to nearly 88% when the non-coding trnH-psbA spacer was paired with one of three coding loci, including rbcL. In silico trials were conducted in which DNA sequences from GenBank were used to further evaluate the discriminatory power of a subset of these loci. These trials supported the earlier observation that trnH-psbA coupled with rbcL can correctly identify and discriminate among related species. A combination of the non-coding trnH-psbA spacer region and a portion of the coding rbcL gene is recommended as a two-locus global land plant barcode that provides the necessary universality and species discrimination.

  19. RNA Editing and Its Molecular Mechanism in Plant Organelles

    PubMed Central

    Ichinose, Mizuho; Sugita, Mamoru

    2016-01-01

    RNA editing by cytidine (C) to uridine (U) conversions is widespread in plant mitochondria and chloroplasts. In some plant taxa, “reverse” U-to-C editing also occurs. However, to date, no instance of RNA editing has yet been reported in green algae and the complex thalloid liverworts. RNA editing may have evolved in early land plants 450 million years ago. However, in some plant species, including the liverwort, Marchantia polymorpha, editing may have been lost during evolution. Most RNA editing events can restore the evolutionarily conserved amino acid residues in mRNAs or create translation start and stop codons. Therefore, RNA editing is an essential process to maintain genetic information at the RNA level. Individual RNA editing sites are recognized by plant-specific pentatricopeptide repeat (PPR) proteins that are encoded in the nuclear genome. These PPR proteins are characterized by repeat elements that bind specifically to RNA sequences upstream of target editing sites. In flowering plants, non-PPR proteins also participate in multiple RNA editing events as auxiliary factors. C-to-U editing can be explained by cytidine deamination. The proteins discovered to date are important factors for RNA editing but a bona fide RNA editing enzyme has yet to be identified. PMID:28025543

  20. Land-Ocean-Atmospheric Coupling Associated with Earthquakes

    NASA Astrophysics Data System (ADS)

    Prasad, A. K.; Singh, R. P.; Kumar, S.; Cervone, G.; Kafatos, M.; Zlotnicki, J.

    2007-12-01

    Earthquakes are well known to occur along the plate boundaries and also on the stable shield. The recent studies have shown existence of strong coupling between land-ocean-atmospheric parameters associated with the earthquakes. We have carried out detailed analysis of multi sensor data (optical and microwave remote) to show existence of strong coupling between land-ocean-atmospheric parameters associated with the earthquakes with focal depth up to 30 km and magnitude greater than 5.5. Complimentary nature of various land, ocean and atmospheric parameters will be demonstrated in getting an early warning information about an impending earthquake.

  1. Lunar base launch and landing facilities conceptual design

    NASA Technical Reports Server (NTRS)

    Phillips, Paul G.; Simonds, Charles H.; Stump, William R.

    1992-01-01

    The purpose of this study was to perform a first look at the requirements for launch and landing facilities for early lunar bases and to prepared conceptual designs for some of these facilities. The emphasis of the study is on the facilities needed from the first manned landing until permanent occupancy, the Phase 2 lunar base. Factors including surface characteristics, navigation system, engine blast effects, and expected surface operations are used to develop landing pad designs, and definitions fo various other elements of the launch and landing facilities. Finally, the dependence of the use of these elements and the evolution of the facilities are established.

  2. Characterizing human-environment interactions in the Galapagos Islands: A case study of land use/land cover dynamics in Isabela Island

    NASA Astrophysics Data System (ADS)

    McCleary, Amy L.

    This dissertation examines contemporary land use and land cover (LULC) change in the communities and protected areas of Isabela Island to provide insights into human-environment interactions in the Galapagos Islands of Ecuador. The growing human presence in Galapagos over the last four decades has been accompanied by significant changes in LULC on inhabited islands in the archipelago. Local stakeholders and decision-makers have recently called for a more integrative approach to understanding interactions between people and the environment in the archipelago. This study is guided by two complementary bodies of work situated within the human-environment tradition of Geography---land change science and landscape ecology. First, support Vector Machine (SVM) and Object Based Image Analysis (OBIA) classifiers are evaluated for mapping LULC from high spatial resolution satellite images. The results show that thematic LULC classifications produced by OBIA are more accurate overall than those generated by SVM. However, important tradeoffs exist between improvements in classification accuracy and processing requirements. The composition and spatial configuration of LULC change are then mapped and quantified from a time series of QuickBird and WorldView-2 satellite images from 2003 to 2010. The pattern metric and change detection analyses reveal that land use change is extensive within the communities due to the expansion and consolidation of built-up areas, and fragmentation of and declines in agriculture. The Galapagos National Park is primarily transformed by exotic plant invasion, forests expansion, and shrinking coastal lagoons. Patterns of agricultural land abandonment, plant invasion, and forest expansion over the same period are described from pattern metric and overlay analyses. Potential drivers of these LULC transitions are identified from logistic regression models, descriptive statistics of agricultural surveys and population censuses, and interviews with

  3. Remediation of metal-contaminated land for plant cultivation in the Arctic/subarctic region

    NASA Astrophysics Data System (ADS)

    Kikuchi, Ryunosuke; Gorbacheva, Tamara T.; Ferreira, Carla S.

    2017-04-01

    Hazardous activities and/or industries involve the use, storage or disposal of hazardous substances. These substances can sometimes contaminate the soil, which can remain contaminated for many years. The metals can have severe effects of on ecosystems. In the Arctic/subarctic regions, the Kola Peninsula (66-70°N and 28°30'-41°30'E) in Russia is one of the seriously polluted regions: close to the nickel-copper smelters, the deposition of metal pollutants has severely damaged the soil and ground vegetation, resulting in a desert area. An area of 10-15 km around the smelters on the Kola Peninsula is today dry sandy and stony ground. A great amount of financial aid is usually required to recover theland. Considering cost performance, a pilot-scale (4ha) field test was carried out to investigate how to apply municipal sewage sludge for rehabilitation of degraded land near the Ni-Cu smelter complex on the Kola Peninsula. The above-mentioned field test for soil rehabilitation was performed while smelting activities were going on; thus, the survey fields were suffering from pollution emitted by the metallurgical industry, and may continue to suffer in the future. After the composting of sewage sludge, the artificial substratum made from the compost was introduced to the test field for the polluted-land remediation, and then willows, birches and grasses were planted on the substratum. The following remarkable points in pollution load were observed between the background field and the rehabilitation test field (e.g. polluted land): (i) the annual precipitation amount of SO42- (5668 g/ha) in the rehabilitation test field was over 5 times greater than that in the background field; (ii) the Pb amount (1.5 g/ha) in the rehabilitation test field was 29 times greater than that in the background field; (iii) the Co amount (10.9 g/ha) in the rehabilitation test field was 54 times greater than that in the background field; (iv) the Cu amount (752 g/ha) in the rehabilitation field

  4. Kashaya Pomo Plants.

    ERIC Educational Resources Information Center

    Goodrich, Jennie; And Others

    The monograph describes more than 200 plants growing within the approximately 300 square miles of the original land of the Kashaya Pomo Indians, which lies along the coast of Sonoma County, California. An introduction provides information on the plant communities represented (redwood forest, mixed evergreen forest, oak woodland, Douglas fir…

  5. US army land condition-trend analysis (LCTA) program

    NASA Astrophysics Data System (ADS)

    Diersing, Victor E.; Shaw, Robert B.; Tazik, David J.

    1992-05-01

    The US Army Land Condition-Trend Analysis (LCTA) program is a standardized method of data collection, analysis, and reporting designed to meet multiple goals and objectives. The method utilizes vascular plant inventories, permanent field plot data, and wildlife inventories. Vascular plant inventories are used for environmental documentation, training of personnel, species identification during LCTA implementation, and as a survey for state and federal endangered or threatened species. The permanent field plot data documents the vegetational, edaphic, topographic, and disturbance characteristics of the installation. Inventory plots are allocated in a stratified random fashion across the installation utilizing a geographic information system that integrates satellite imagery and soil survey information. Ground cover, canopy cover, woody plant density, slope length, slope gradient, soil information, and disturbance data are collected at each plot. Plot data are used to: (1) describe plant communities, (2) characterize wildlife and threatened and endangered species habitat, (3) document amount and kind of military and nonmilitary disturbance, (4) determine the impact of military training on vegetation and soil resources, (5) estimate soil erosion potential, (6) classify land as to the kind and amount of use it can support, (7) determine allowable use estimates for tracked vehicle training, (8) document concealment resources, (9) identify lands that require restoration and evaluate the effectiveness of restorative techniques, and (10) evaluate potential acquisition property. Wildlife inventories survey small and midsize mammals, birds, bats, amphibians, and reptiles. Data from these surveys can be used for environmental documentation, to identify state and federal endangered and threatened species, and to evaluate the impact of military activities on wildlife populations. Short- and long-term monitoring of permanent field plots is used to evaluate and adjust land

  6. 7 CFR 1000.4 - Plant.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 9 2013-01-01 2013-01-01 false Plant. 1000.4 Section 1000.4 Agriculture Regulations... § 1000.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land, buildings... section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not include: (1...

  7. 7 CFR 1000.4 - Plant.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 9 2014-01-01 2013-01-01 true Plant. 1000.4 Section 1000.4 Agriculture Regulations of... § 1000.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land, buildings... section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not include: (1...

  8. 7 CFR 1000.4 - Plant.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 9 2012-01-01 2012-01-01 false Plant. 1000.4 Section 1000.4 Agriculture Regulations... § 1000.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land, buildings... section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not include: (1...

  9. 7 CFR 1001.4 - Plant.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 9 2011-01-01 2011-01-01 false Plant. 1001.4 Section 1001.4 Agriculture Regulations... Definitions § 1001.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land...) of this section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not...

  10. 7 CFR 1001.4 - Plant.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 9 2010-01-01 2009-01-01 true Plant. 1001.4 Section 1001.4 Agriculture Regulations of... Definitions § 1001.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land...) of this section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not...

  11. 7 CFR 1000.4 - Plant.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 9 2011-01-01 2011-01-01 false Plant. 1000.4 Section 1000.4 Agriculture Regulations... § 1000.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land, buildings... section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not include: (1...

  12. 7 CFR 1001.4 - Plant.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 9 2013-01-01 2013-01-01 false Plant. 1001.4 Section 1001.4 Agriculture Regulations... Definitions § 1001.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land...) of this section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not...

  13. 7 CFR 1001.4 - Plant.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 9 2014-01-01 2013-01-01 true Plant. 1001.4 Section 1001.4 Agriculture Regulations of... Definitions § 1001.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land...) of this section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not...

  14. 7 CFR 1001.4 - Plant.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 9 2012-01-01 2012-01-01 false Plant. 1001.4 Section 1001.4 Agriculture Regulations... Definitions § 1001.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land...) of this section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not...

  15. 7 CFR 1000.4 - Plant.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 9 2010-01-01 2009-01-01 true Plant. 1000.4 Section 1000.4 Agriculture Regulations of... § 1000.4 Plant. (a) Except as provided in paragraph (b) of this section, plant means the land, buildings... section if the facility receives the milk of more than one dairy farmer. (b) Plant shall not include: (1...

  16. Extinction risks of Amazonian plant species.

    PubMed

    Feeley, Kenneth J; Silman, Miles R

    2009-07-28

    Estimates of the number, and preferably the identity, of species that will be threatened by land-use change and habitat loss are an invaluable tool for setting conservation priorities. Here, we use collections data and ecoregion maps to generate spatially explicit distributions for more than 40,000 vascular plant species from the Amazon basin (representing more than 80% of the estimated Amazonian plant diversity). Using the distribution maps, we then estimate the rates of habitat loss and associated extinction probabilities due to land-use changes as modeled under 2 disturbance scenarios. We predict that by 2050, human land-use practices will have reduced the habitat available to Amazonian plant species by approximately 12-24%, resulting in 5-9% of species becoming "committed to extinction," significantly fewer than other recent estimates. Contrary to previous studies, we find that the primary determinant of habitat loss and extinction risk is not the size of a species' range, but rather its location. The resulting extinction risk estimates are a valuable conservation tool because they indicate not only the total percentage of Amazonian plant species threatened with extinction but also the degree to which individual species and habitats will be affected by current and future land-use changes.

  17. Coupled C, N and P controls on photosynthesis, primary production and decomposition across a land use intensification gradient and implications for land atmosphere C exchange

    NASA Astrophysics Data System (ADS)

    Reinsch, Sabine; Glanville, Helen; Smart, Simon; Jones, Davey; Mercado, Lina; Blanes-Alberola, Mamen; Cosby, Jack; Emmett, Bridget

    2016-04-01

    The coupling of C, N and P cycles has rarely been studied through the air- land-water continuum. This is essential if we are to enhance land-atmosphere models to account for N and P limitations. It is also important for developing integrated catchment management solutions to deliver improved water quality combined with a wide range of other ecosystem functions and services. We present results from a project which is part of the interdisciplinary pan-UK NERC Macronutrient Cycles Programme (macronutrient-cycles.ouce.ox.ac.uk/). Our aim is to quantify how coupled C, N & P cycles change across a land use intensification gradient from arable to grass, woodland and bog ecosystems and identify the implications for land-atmosphere C exchange. We focus on three key processes; photosynthesis, annual net primary productivity and decomposition and explore their consequences for biodiversity. Other aspects of the project track delivery to, and transformations within, the freshwater and coastal systems. When we explore relationships between C, N and P, results indicate all habitat types fall on a single land use intensification gradient. Stoichiometry suggests plant productivity is primarily N limited. P limitation occurs rarely but at all levels of intensification. Soil priming shows our soils are primarily C limited and, surprisingly, soil acidity provides one of the most powerful single predictors of processes and ecosystem services perhaps as it is a good integrator of many soil properties. Incorporating this knowledge into the UK land-atmosphere model JULES will improve aNPP projections. These are then being used as inputs into a plant species model called MULTIMOVE to enable future scenarios of climate change, land use and air pollution on habitat suitability for > 1400 plant species to be explored. The enhanced Jules model will ensure both N and P limitations on C fluxes from above and below-ground are incorporated into future UK scenario applications.

  18. 43 CFR 10010.9 - Apply NEPA early.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 43 Public Lands: Interior 2 2011-10-01 2011-10-01 false Apply NEPA early. 10010.9 Section 10010.9... Initiating the NEPA Process § 10010.9 Apply NEPA early. (a) The Commission will initiate early consultation... early with interested private parties and organizations, including when the Commission's own involvement...

  19. Oligosaccharides from land plants and algae: production and applications in therapeutics and biotechnology.

    PubMed

    Courtois, Josiane

    2009-06-01

    Since the past decades, oligosaccharides are considered for their potential biological activities. To exploit them, it was essential to obtain pure molecules in large amounts. Several strategies were developed to produce specific sugar sequences with specific substitution patterns from land plants and algae polysaccharides. Then, pure oligosaccharides were analyzed for their potential biological activities and relations between oligomers structure and function were tackled. First they can be health beneficial molecules when they are added to the diet to enhance the growth of probiotic bacteria, in that case, oligomers that resist to the digestive process are used as specific substrate for the growth of health beneficial bacteria. In other cases, oligomers have to interact with receptors on cells. In this instance, a specific conformation is needed to allow the sugar sequence to establish specific linkages with the receptor. So, to be adapted to the receptor, the oligosaccharides have to present specific groups to the receptor, there, the polymerization degree of oligosaccharides as well as the flexibility of the glycosidic linkages has to be considered.

  20. Examination - Plants - Lunar (Germ Free) Soil - Plant Laboratory - MSC

    NASA Image and Video Library

    1969-10-08

    S69-53894 (October 1969) --- Dr. Charles H. Walkinshaw, Jr., Spaceflight Biotechnology Branch botanist, Preventive Medicine Division, Manned Spacecraft Center (MSC), examines sorghum and tobacco plants in lunar (germ free) soil in the Plant Laboratory of the MSC’s Lunar Receiving Laboratory. The soil was brought back from the moon by the crew of the Apollo 11 lunar landing mission.

  1. RECYCLING OF WATER TREATMENT PLANT SLUDGE VIA LAND APPLICATION: ASSESSMENT OF RISK

    EPA Science Inventory

    Water treatment sludges (WTS) offer potential benefits when applied to soil and recycling of the waste stream via land application has been proposed as a management option. Recycling of WTS to the land helps conserve landfill disposal capacity and natural resources, but potential...

  2. Land Use Compounds Habitat Losses under Projected Climate Change in a Threatened California Ecosystem

    PubMed Central

    Riordan, Erin Coulter; Rundel, Philip W.

    2014-01-01

    Given the rapidly growing human population in mediterranean-climate systems, land use may pose a more immediate threat to biodiversity than climate change this century, yet few studies address the relative future impacts of both drivers. We assess spatial and temporal patterns of projected 21st century land use and climate change on California sage scrub (CSS), a plant association of considerable diversity and threatened status in the mediterranean-climate California Floristic Province. Using a species distribution modeling approach combined with spatially-explicit land use projections, we model habitat loss for 20 dominant shrub species under unlimited and no dispersal scenarios at two time intervals (early and late century) in two ecoregions in California (Central Coast and South Coast). Overall, projected climate change impacts were highly variable across CSS species and heavily dependent on dispersal assumptions. Projected anthropogenic land use drove greater relative habitat losses compared to projected climate change in many species. This pattern was only significant under assumptions of unlimited dispersal, however, where considerable climate-driven habitat gains offset some concurrent climate-driven habitat losses. Additionally, some of the habitat gained with projected climate change overlapped with projected land use. Most species showed potential northern habitat expansion and southern habitat contraction due to projected climate change, resulting in sharply contrasting patterns of impact between Central and South Coast Ecoregions. In the Central Coast, dispersal could play an important role moderating losses from both climate change and land use. In contrast, high geographic overlap in habitat losses driven by projected climate change and projected land use in the South Coast underscores the potential for compounding negative impacts of both drivers. Limiting habitat conversion may be a broadly beneficial strategy under climate change. We emphasize the

  3. Land use compounds habitat losses under projected climate change in a threatened California ecosystem.

    PubMed

    Riordan, Erin Coulter; Rundel, Philip W

    2014-01-01

    Given the rapidly growing human population in mediterranean-climate systems, land use may pose a more immediate threat to biodiversity than climate change this century, yet few studies address the relative future impacts of both drivers. We assess spatial and temporal patterns of projected 21(st) century land use and climate change on California sage scrub (CSS), a plant association of considerable diversity and threatened status in the mediterranean-climate California Floristic Province. Using a species distribution modeling approach combined with spatially-explicit land use projections, we model habitat loss for 20 dominant shrub species under unlimited and no dispersal scenarios at two time intervals (early and late century) in two ecoregions in California (Central Coast and South Coast). Overall, projected climate change impacts were highly variable across CSS species and heavily dependent on dispersal assumptions. Projected anthropogenic land use drove greater relative habitat losses compared to projected climate change in many species. This pattern was only significant under assumptions of unlimited dispersal, however, where considerable climate-driven habitat gains offset some concurrent climate-driven habitat losses. Additionally, some of the habitat gained with projected climate change overlapped with projected land use. Most species showed potential northern habitat expansion and southern habitat contraction due to projected climate change, resulting in sharply contrasting patterns of impact between Central and South Coast Ecoregions. In the Central Coast, dispersal could play an important role moderating losses from both climate change and land use. In contrast, high geographic overlap in habitat losses driven by projected climate change and projected land use in the South Coast underscores the potential for compounding negative impacts of both drivers. Limiting habitat conversion may be a broadly beneficial strategy under climate change. We emphasize

  4. Land degradation causes and sustainable land management practices in southern Jordan

    NASA Astrophysics Data System (ADS)

    Khresat, Saeb

    2014-05-01

    Jordan is one of the world's most water-deficit countries with only about 4% of the total land area considered arable. As a consequence agricultural production is greatly constrained by limited natural resources. Therefore, a major challenge for the country is to promote the sustainable use of natural resources for agricultural purposes. This challenge is being made harder by the ongoing processes of degradation due to increased population pressure, which undermine any social and economic development gains. In the southern plains of Jordan, sustainability of farming practices has worsened in the past three decades, exacerbating pressure on land and increasing land degradation processes. Non-sustainable land use practices include improper ploughing, inappropriate rotations, inadequate or inexistent management of plant residues, overgrazing of natural vegetation, random urbanization, land fragmentation and over-pumping of groundwater. The root cause is the high population growth which exerts excessive pressure on the natural resources to meet increased food and income demand. The poorest farmers who are increasingly growing cereals on marginal areas. Wheat and barley are now grown with little to no rotation, with no nutrient replenishment, and at places avoiding even fallow. Small landholding sizes and topographic features of the area tend to oblige longitudinal mechanized tillage operations along the slopes. Overall, the constraints facing the deprived land users such as, poor access to technology, capital and organization are the factors that lead into unsustainable practices. The main bottlenecks and barriers that hinder mainstreaming of sustainable land management in Jordan can be grouped into three main categories: (i) Knowledge, (ii) Institutional and Governance, and (iii) Economic and Financial. In this case study, the key challenge was to create a knowledge base among local stakeholders - including planners, extension officers, NGO/community leaders, teachers

  5. Tennessee's forest land area was stable 1999-2005 but early successional forest area declined

    Treesearch

    Christopher M. Oswalt

    2008-01-01

    A new analysis of the most recent (2005) annualized moving average data for Tennessee indicates that the area of forest land in the State remained stable between 1999 and 2005. Although trends in forest land area vary from region to region within the State, Tennessee neither lost nor gained forest land between 1999 and 2005. However, Tennessee had more than 2.5 times...

  6. Reconstructing Early Industrial Contributions to Legacy Trace Metal Contamination in Southwestern Pennsylvania.

    PubMed

    Rossi, Robert J; Bain, Daniel J; Hillman, Aubrey L; Pompeani, David P; Finkenbinder, Matthew S; Abbott, Mark B

    2017-04-18

    Early industrial trace metal loadings are poorly characterized but potentially substantial sources of trace metals to the landscape. The magnitude of legacy contamination in southwestern Pennsylvania, the cradle of North American fossil fuel industrialization, is reconstructed from trace metal concentrations in a sediment core with proxies including major and trace metal chemistry, bulk density, and magnetic susceptibility. Trace metal chemistry in this sediment record reflects 19th and 20th century land use and industry. In particular, early 19th century arsenic loadings to the lake are elevated from pesticides used by early European settlers at a lakeside tannery. Later, sediment barium concentrations rise, likely reflecting the onset of acidic mine drainage from coal operations. Twentieth century zinc, cadmium, and lead concentrations are dominated by emissions from the nearby, infamous Donora Zinc Works yet record both the opening of a nearby coal-fired power plant and amendments to the Clean Air Act. The impact of early industry is substantial and rivals more recent metal fluxes, resulting in a significant potential source of contaminated sediments. Thus, modern assessments of trace metal contamination cannot ignore early industrial inputs, as the potential remobilization of legacy contamination would impact ecosystem and human health.

  7. Land Husbandry: Biochar application to reduce land degradation and erosion on cassava production

    NASA Astrophysics Data System (ADS)

    Yuniwati, E. D.

    2017-12-01

    This field experiment was carried out to examine the effect of increasing crop yield on land degradation and erosion in cassava-based cropping systems. The experiment was also aimed at showing that with proper crop management, the planting of cassava does not result in land degradation, and therefore, a sustainable production system can be obtained. The experiment was done in a farmer's fields in Batu, about 15 km south east of Malang, East Java, Indonesia. The soils are Alfisols with a surface slope of about 8%. There were 8 experimental treatments with two replications. The experiment results show that biochar applications reduce of soil erosion rate of the cassava field were not necessarily higher than those of maize in terms of crop yield and crop management. At low-to-medium yield, also observed the nutrient uptake of cassava was lower than that of maize. At high yield, only the K uptake of cassava was higher than that of maize, whereas the N and P uptake was more or less similar. Soil erosion on the cassava field was significantly higher than that on the maize field; however, this only occurred when there was no suitable crop management. Simple crop managements, such as ridging, biochar application, or manure application could significantly reduce soil erosion. The results also revealed that proper management could prevent land degradation and increase crop yield. In turn, the increase in crop yield could decrease soil erosion and plant nutrient depletion.

  8. Small-scale spatial variability in phylogenetic community structure during early plant succession depends on soil properties.

    PubMed

    Ulrich, Werner; Piwczyński, Marcin; Zaplata, Markus Klemens; Winter, Susanne; Schaaf, Wolfgang; Fischer, Anton

    2014-07-01

    During early plant succession, the phylogenetic structure of a community changes in response to important environmental filters and emerging species interactions. We traced the development of temperate-zone plant communities during the first 7 years of primary succession on catchment soils to explore patterns of initial species assembly. We found pronounced small-scale differences in the phylogenetic composition of neighbouring plant assemblages and a large-scale trend towards phylogenetic evenness. This small-scale variability appears to be mediated by soil properties, particularly carbonate content. Therefore, abiotic environmental conditions might counteract or even supersede the effects of interspecific competition among closely related species, which are usually predicted to exhibit patterns of phylogenetic evenness. We conclude that theories on phylogenetic community composition need to incorporate effects of small-scale variability of environmental factors.

  9. Cadastral valuation of land contaminated with radionuclides

    NASA Astrophysics Data System (ADS)

    Ratnikov, A. N.; Sapozhnikov, P. M.; Sanzharova, N. I.; Sviridenko, D. G.; Zhigareva, T. L.; Popova, G. I.; Panov, A. V.; Kozlova, I. Yu.

    2016-01-01

    The methodology and procedure for cadastral valuation of land in the areas contaminated with radionuclides are presented. The efficiency of rehabilitation measures applied to decrease crop contamination to the levels satisfying sanitary-hygienic norms is discussed. The differentiation of cadastral value of radioactively contaminated agricultural lands for the particular farms and land plots is suggested. An example of cadastral valuation of agricultural land contaminated during the Chernobyl Nuclear Power Plant accident is given. It is shown that the use of sandy and loamy sandy soddy-podzolic soils with the 137Cs contamination of 37-185 and >185 kBq/m2 for crop growing is unfeasible. The growing of grain crops and potatoes on clay loamy soddy-podzolic soils with the 137Cs contamination of 555-740 kBq/m2 is unprofitable. The maximum cadastral value of radioactively contaminated lands is typical of leached chernozems.

  10. Exotic Plants are Invading Southeastern Forests

    Treesearch

    James H. Miller

    1997-01-01

    Millions of acres of forest land in the Southeast are being occupied increasingly by non-indigenous harmful plants--exotic invasive plants. They are called exotic invasive plants, because these plants from other continents invade areas in the U.S. faster and more completely than most native species. Invasive exotic plants impede forest productivity, hinder forest-use...

  11. Comparing the Performance of Three Land Models in Global C Cycle Simulations: A Detailed Structural Analysis: Structural Analysis of Land Models

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Rafique, Rashid; Xia, Jianyang; Hararuk, Oleksandra

    Land models are valuable tools to understand the dynamics of global carbon (C) cycle. Various models have been developed and used for predictions of future C dynamics but uncertainties still exist. Diagnosing the models’ behaviors in terms of structures can help to narrow down the uncertainties in prediction of C dynamics. In this study three widely used land surface models, namely CSIRO’s Atmosphere Biosphere Land Exchange (CABLE) with 9 C pools, Community Land Model (version 3.5) combined with Carnegie-Ames-Stanford Approach (CLM-CASA) with 12 C pools and Community Land Model (version 4) (CLM4) with 26 C pools were driven by themore » observed meteorological forcing. The simulated C storage and residence time were used for analysis. The C storage and residence time were computed globally for all individual soil and plant pools, as well as net primary productivity (NPP) and its allocation to different plant components’ based on these models. Remotely sensed NPP and statistically derived HWSD, and GLC2000 datasets were used as a reference to evaluate the performance of these models. Results showed that CABLE exhibited better agreement with referenced C storage and residence time for plant and soil pools, as compared with CLM-CASA and CLM4. CABLE had longer bulk residence time for soil C pools and stored more C in roots, whereas, CLM-CASA and CLM4 stored more C in woody pools due to differential NPP allocation. Overall, these results indicate that the differences in C storage and residence times in three models are largely due to the differences in their fundamental structures (number of C pools), NPP allocation and C transfer rates. Our results have implications in model development and provide a general framework to explain the bias/uncertainties in simulation of C storage and residence times from the perspectives of model structures.« less

  12. Dynamic quantification of canopy structure to characterize early plant vigour in wheat genotypes

    PubMed Central

    Duan, T.; Chapman, S.C.; Holland, E.; Rebetzke, G.J.; Guo, Y.; Zheng, B.

    2016-01-01

    Early vigour is an important physiological trait to improve establishment, water-use efficiency, and grain yield for wheat. Phenotyping large numbers of lines is challenging due to the fast growth and development of wheat seedlings. Here we developed a new photo-based workflow to monitor dynamically the growth and development of the wheat canopy of two wheat lines with a contrasting early vigour trait. Multiview images were taken using a ‘vegetation stress’ camera at 2 d intervals from emergence to the sixth leaf stage. Point clouds were extracted using the Multi-View Stereo and Structure From Motion (MVS-SFM) algorithm, and segmented into individual organs using the Octree method, with leaf midribs fitted using local polynomial function. Finally, phenotypic parameters were calculated from the reconstructed point cloud including: tiller and leaf number, plant height, Haun index, phyllochron, leaf length, angle, and leaf elongation rate. There was good agreement between the observed and estimated leaf length (RMSE=8.6mm, R 2=0.98, n=322) across both lines. Significant contrasts of phenotyping parameters were observed between the two lines and were consistent with manual observations. The early vigour line had fewer tillers (2.4±0.6) and larger leaves (308.0±38.4mm and 17.1±2.7mm for leaf length and width, respectively). While the phyllochron of both lines was quite similar, the non-vigorous line had a greater Haun index (more leaves on the main stem) on any date, as the vigorous line had slower development of its first two leaves. The workflow presented in this study provides an efficient method to phenotype individual plants using a low-cost camera (an RGB camera is also suitable) and could be applied in phenotyping for applications in both simulation modelling and breeding. The rapidity and accuracy of this novel method can characterize the results of specific selection criteria (e.g. width of leaf three, number of tillers, rate of leaf appearance) that

  13. Dynamic quantification of canopy structure to characterize early plant vigour in wheat genotypes.

    PubMed

    Duan, T; Chapman, S C; Holland, E; Rebetzke, G J; Guo, Y; Zheng, B

    2016-08-01

    Early vigour is an important physiological trait to improve establishment, water-use efficiency, and grain yield for wheat. Phenotyping large numbers of lines is challenging due to the fast growth and development of wheat seedlings. Here we developed a new photo-based workflow to monitor dynamically the growth and development of the wheat canopy of two wheat lines with a contrasting early vigour trait. Multiview images were taken using a 'vegetation stress' camera at 2 d intervals from emergence to the sixth leaf stage. Point clouds were extracted using the Multi-View Stereo and Structure From Motion (MVS-SFM) algorithm, and segmented into individual organs using the Octree method, with leaf midribs fitted using local polynomial function. Finally, phenotypic parameters were calculated from the reconstructed point cloud including: tiller and leaf number, plant height, Haun index, phyllochron, leaf length, angle, and leaf elongation rate. There was good agreement between the observed and estimated leaf length (RMSE=8.6mm, R (2)=0.98, n=322) across both lines. Significant contrasts of phenotyping parameters were observed between the two lines and were consistent with manual observations. The early vigour line had fewer tillers (2.4±0.6) and larger leaves (308.0±38.4mm and 17.1±2.7mm for leaf length and width, respectively). While the phyllochron of both lines was quite similar, the non-vigorous line had a greater Haun index (more leaves on the main stem) on any date, as the vigorous line had slower development of its first two leaves. The workflow presented in this study provides an efficient method to phenotype individual plants using a low-cost camera (an RGB camera is also suitable) and could be applied in phenotyping for applications in both simulation modelling and breeding. The rapidity and accuracy of this novel method can characterize the results of specific selection criteria (e.g. width of leaf three, number of tillers, rate of leaf appearance) that have

  14. Step-wise and lineage-specific diversification of plant RNA polymerase genes and origin of the largest plant-specific subunits.

    PubMed

    Wang, Yaqiong; Ma, Hong

    2015-09-01

    Proteins often function as complexes, yet little is known about the evolution of dissimilar subunits of complexes. DNA-directed RNA polymerases (RNAPs) are multisubunit complexes, with distinct eukaryotic types for different classes of transcripts. In addition to Pol I-III, common in eukaryotes, plants have Pol IV and V for epigenetic regulation. Some RNAP subunits are specific to one type, whereas other subunits are shared by multiple types. We have conducted extensive phylogenetic and sequence analyses, and have placed RNAP gene duplication events in land plant history, thereby reconstructing the subunit compositions of the novel RNAPs during land plant evolution. We found that Pol IV/V have experienced step-wise duplication and diversification of various subunits, with increasingly distinctive subunit compositions. Also, lineage-specific duplications have further increased RNAP complexity with distinct copies in different plant families and varying divergence for subunits of different RNAPs. Further, the largest subunits of Pol IV/V probably originated from a gene fusion in the ancestral land plants. We propose a framework of plant RNAP evolution, providing an excellent model for protein complex evolution. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

  15. Grand challenges in understanding the interplay of climate and land changes

    DOE PAGES

    Liu, Shuguang; Bond-Lamberty, Ben; Boysen, Lena R.; ...

    2017-03-28

    Half of the Earth s land surface has been altered by human activities, creating various consequences on the climate and weather systems at local to global scales, which in turn affects a myriad of land surface processes and our adaptation behaviors. We here review the status and major knowledge gaps of studying the interactions of land and atmospheric changes and present eleven grand challenge areas for scientific research and adaptation communities in the coming decade: (1) collective and separate impacts of major land changes and the interactions with non-land-change factors such as atmospheric CO2 increase, (2) carbon and other biogeochemicalmore » cycles, (3) climatically relevant biospheric emissions such as aerosols, (4) water cycle, (5) agriculture, (6) urbanization, (7) gradual acclimation of plants, communities, and ecosystems to climate and environmental changes, (8) plant migration, (9) land use projections, (10) reduction of uncertainties in models and data, and finally (11) adaptation strategies. We conclude that we need to create and maintain a close cross-disciplinary coordination between measurements and process representation in models to analyze complex multi-facet interrelated perturbations and feedbacks between land and climate changes. Along with major scientific research thrusts, land-use and land cover change mitigation and adaptation assessments should be strengthened to identify barriers that need to be overcome, evaluate and prioritize opportunities, and examine how decision making processes work in specific contexts.« less

  16. Grand challenges in understanding the interplay of climate and land changes

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Liu, Shuguang; Bond-Lamberty, Ben; Boysen, Lena R.

    Half of the Earth s land surface has been altered by human activities, creating various consequences on the climate and weather systems at local to global scales, which in turn affects a myriad of land surface processes and our adaptation behaviors. We here review the status and major knowledge gaps of studying the interactions of land and atmospheric changes and present eleven grand challenge areas for scientific research and adaptation communities in the coming decade: (1) collective and separate impacts of major land changes and the interactions with non-land-change factors such as atmospheric CO2 increase, (2) carbon and other biogeochemicalmore » cycles, (3) climatically relevant biospheric emissions such as aerosols, (4) water cycle, (5) agriculture, (6) urbanization, (7) gradual acclimation of plants, communities, and ecosystems to climate and environmental changes, (8) plant migration, (9) land use projections, (10) reduction of uncertainties in models and data, and finally (11) adaptation strategies. We conclude that we need to create and maintain a close cross-disciplinary coordination between measurements and process representation in models to analyze complex multi-facet interrelated perturbations and feedbacks between land and climate changes. Along with major scientific research thrusts, land-use and land cover change mitigation and adaptation assessments should be strengthened to identify barriers that need to be overcome, evaluate and prioritize opportunities, and examine how decision making processes work in specific contexts.« less

  17. Field Sampling Plan for Closure of the Central Facilities Area Sewage Treatment Plant Lagoon 3 and Land Application Area

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lewis, Michael George

    This field sampling plan describes sampling of the soil/liner of Lagoon 3 at the Central Facilities Area Sewage Treatment Plant. The lagoon is to be closed, and samples obtained from the soil/liner will provide information to determine if Lagoon 3 and the land application area can be closed in a manner that renders it safe to human health and the environment. Samples collected under this field sampling plan will be compared to Idaho National Laboratory background soil concentrations. If the concentrations of constituents of concern exceed the background level, they will be compared to Comprehensive Environmental Response, Compensation, and Liabilitymore » Act preliminary remediation goals and Resource Conservation and Recovery Act levels. If the concentrations of constituents of concern are lower than the background levels, Resource Conservation and Recovery Act levels, or the preliminary remediation goals, then Lagoon 3 and the land application area will be closed. If the Resource Conservation and Recovery Act levels and/or the Comprehensive Environmental Response, Compensation, and Liability Act preliminary remediation goals are exceeded, additional sampling and action may be required.« less

  18. Remote sensing of land surface phenology

    USGS Publications Warehouse

    Meier, G.A.; Brown, Jesslyn F.

    2014-01-01

    Remote sensing of land-surface phenology is an important method for studying the patterns of plant and animal growth cycles. Phenological events are sensitive to climate variation; therefore phenology data provide important baseline information documenting trends in ecology and detecting the impacts of climate change on multiple scales. The USGS Remote sensing of land surface phenology program produces annually, nine phenology indicator variables at 250 m and 1,000 m resolution for the contiguous U.S. The 12 year archive is available at http://phenology.cr.usgs.gov/index.php.

  19. Ozone and haze pollution effects on the contemporary land carbon cycle

    NASA Astrophysics Data System (ADS)

    Unger, N.

    2016-12-01

    Atmospheric pollutants have both beneficial and detrimental effects on carbon uptake by land ecosystems. Surface ozone damages leaf photosynthesis by oxidizing plant cells, while aerosols promote carbon uptake by increasing diffuse radiation and exert additional influences through concomitant perturbations to meteorology and hydrology. Here, I present new results from three assessment studies that employ Earth system modeling and multiple measurement datasets. First, we quantify the separate and combined effects of anthropogenic ozone and aerosol pollution on the global land carbon uptake. Second, we evaluate benefits to land ecosystem health from selective emission reductions in specific pollution sources and sectors. Finally, I show that the long-term climatic effects of mid-latitude air pollution boosts plant productivity in the Amazon by 10% on the annual average today.

  20. Planting and care of fine hardwood seedlings: Planting hardwood seedlings in the Central Hardwood Region.

    Treesearch

    Paula M. Pijut

    2003-01-01

    Forest tree planting in the United States on public and private land exceeded 2.6 million acres in 1999. Of that total, approximately 1.3 million acres (48 percent) were planted by private individuals (AF & PA 2001). In the Central Hardwood Region forest tree planting by private landowners exceeded 100,000 acres in 1999. Trees are planted for various reasons...

  1. Rapid atmospheric transport and large-scale deposition of recently synthesized plant waxes

    NASA Astrophysics Data System (ADS)

    Nelson, Daniel B.; Ladd, S. Nemiah; Schubert, Carsten J.; Kahmen, Ansgar

    2018-02-01

    Sedimentary plant wax 2H/1H ratios are important tools for understanding hydroclimate and environmental changes, but large spatial and temporal uncertainties exist about transport mechanisms from ecosystem to sediments. To assess atmospheric pathways, we collected aerosol samples for two years at four locations within a ∼60 km radius in northern Switzerland. We measured n-alkane distributions and 2H/1H ratios in these samples, and from local plants, leaf litter, and soil, as well as surface sediment from six nearby lakes. Increased concentrations and 2H depletion of long odd chain n-alkanes in early summer aerosols indicate that most wax aerosol production occurred shortly after leaf unfolding, when plants synthesize waxes in large quantities. During autumn and winter, aerosols were characterized by degraded n-alkanes lacking chain length preferences diagnostic of recent biosynthesis, and 2H/1H values that were in some cases more than 100‰ higher than growing season values. Despite these seasonal shifts, modeled deposition-weighted average 2H/1H values of long odd chain n-alkanes primarily reflected summer values. This was corroborated by n-alkane 2H/1H values in lake sediments, which were similar to deposition-weighted aerosol values at five of six sites. Atmospheric deposition rates for plant n-alkanes on land were ∼20% of accumulation rates in lakes, suggesting a role for direct deposition to lakes or coastal oceans near similar production sources, and likely a larger role for deposition on land and transport in river systems. This mechanism allows mobilization and transport of large quantities of recently produced waxes as fine-grained material to low energy sedimentation sites over short timescales, even in areas with limited topography. Widespread atmospheric transfer well before leaf senescence also highlights the importance of the isotopic composition of early season source water used to synthesize waxes for the geologic record.

  2. Hydrologic Regulation of Plant Rooting Depth and Vice Versa

    NASA Astrophysics Data System (ADS)

    Fan, Y.; Miguez-Macho, G.

    2017-12-01

    How deep plant roots go and why may hold the answer to several questions regarding the co-evolution of terrestrial life and its environment. In this talk we explore how plant rooting depth responds to the hydrologic plumbing system in the soil/regolith/bedrocks, and vice versa. Through analyzing 2200 root observations of >1000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients, we found strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to groundwater capillary fringe. We explore the global significance of this framework using an inverse model, and the implications to the coevolution of deep roots and the CZ in the Early-Mid Devonian when plants colonized the upland environments.

  3. 150 years of land degradation and development: loss of habitats, natural resources due to quarrying and industrialization followed by land reclamation in the heart of Budapest city

    NASA Astrophysics Data System (ADS)

    Török, Ákos

    2017-04-01

    The urban development and land degradation is an accelerated process in the 21st century; however several examples are known when this happened in the past. A historic case study is discussed in this research when clump of three former small towns (named: Buda, Pest and Óbuda) became a million population city more than hundred years ago invoking significant land degradation, drastic and surprising changes in land use. Budapest which is now the capital of Hungary has seen rapid land use changes in the past 150 years especially from 1850'ies to early 20th century. The population of the city rapidly grown from the end of 19th century to early 20th century; i.e. it is tripled from 1880 to 1920 and reached nearly 1 million in 40 years. This population boom induced significant land degradation, changes in land use and loss of habitats. The paper presents examples how the land use has changed in the past 105 years with historic maps and interpreted cases suggesting different pathways leading to land degradation. The first one focuses on vineyards and grape cultivation and explains how these areas were first converted to limestone quarries to provide construction material to the city and then transformed to urban habitat in the early 20th century again. The cellars - former quarry galleries - than were used for housing (urban habitat) and later were used as storage facilities and mushroom cultivation sites. At present these subsurface openings cause high risk of land development (collapse) and limit the land use of the given area. The current paper also outlines the development of the city via the perspective of natural resources, since drinking water and industrial water need modified the land development and urbanization. Another example is also given how the brewery industry exploited natural resources and the surface water use was shifted to exploitation of karstic waters causing land degradation and drop of water table. Additional example demonstrates how the former

  4. Tomato Cutin Deficient 1 (CD1) and Putative Orthologs Comprise an Ancient Family of Cutin Synthase-like (CUS) Proteins that are Conserved among Land Plants

    PubMed Central

    Yeats, Trevor H.; Huang, Wenlin; Chatterjee, Subhasish; Viart, Hélène M-F.; Clausen, Mads H.; Stark, Ruth E.; Rose, Jocelyn K.C.

    2014-01-01

    Summary The aerial epidermis of all land plants is covered with a hydrophobic cuticle that provides essential protection from desiccation, and so its evolution is believed to have been prerequisite for terrestrial colonization. A major structural component of apparently all plant cuticles is cutin, a polyester of hydroxy fatty acids. However, despite its ubiquity, the details of cutin polymeric structure and the mechanisms of its formation and remodeling are not well understood. We recently reported that cutin polymerization in tomato (Solanum lycopersicum) fruit occurs via transesterification of hydroxyacylglycerol precursors, catalyzed by the GDSL-motif lipase/hydrolase family protein (GDSL) Cutin Deficient 1 (CD1). Here we present additional biochemical characterization of CD1 and putative orthologs from Arabidopsis thaliana and the moss Physcomitrella patens, which represent a distinct clade of cutin synthases within the large GDSL super-family. We demonstrate that members of this ancient and conserved family of cutin synthase-like (CUS) proteins act as polyester synthases with negligible hydrolytic activity. Moreover, solution-state NMR analysis indicates that CD1 catalyzes the formation of primarily linear cutin oligomeric products in vitro. These results reveal a conserved mechanism of cutin polyester synthesis in land plants, and suggest that elaborations of the linear polymer, such as branching or cross-linking, may require additional, as yet unknown, factors. PMID:24372802

  5. The biogeophysical climatic impacts of anthropogenic land use change during the Holocene

    NASA Astrophysics Data System (ADS)

    Smith, M. Clare; Singarayer, Joy S.; Valdes, Paul J.; Kaplan, Jed O.; Branch, Nicholas P.

    2016-04-01

    The first agricultural societies were established around 10 ka BP and had spread across much of Europe and southern Asia by 5.5 ka BP with resultant anthropogenic deforestation for crop and pasture land. Various studies (e.g. Joos et al., 2004; Kaplan et al., 2011; Mitchell et al., 2013) have attempted to assess the biogeochemical implications for Holocene climate in terms of increased carbon dioxide and methane emissions. However, less work has been done to examine the biogeophysical impacts of this early land use change. In this study, global climate model simulations with Hadley Centre Coupled Model version 3 (HadCM3) were used to examine the biogeophysical effects of Holocene land cover change on climate, both globally and regionally, from the early Holocene (8 ka BP) to the early industrial era (1850 CE). Two experiments were performed with alternative descriptions of past vegetation: (i) one in which potential natural vegetation was simulated by Top-down Representation of Interactive Foliage and Flora Including Dynamics (TRIFFID) but without land use changes and (ii) one where the anthropogenic land use model Kaplan and Krumhardt 2010 (KK10; Kaplan et al., 2009, 2011) was used to set the HadCM3 crop regions. Snapshot simulations were run at 1000-year intervals to examine when the first signature of anthropogenic climate change can be detected both regionally, in the areas of land use change, and globally. Results from our model simulations indicate that in regions of early land disturbance such as Europe and south-east Asia detectable temperature changes, outside the normal range of variability, are encountered in the model as early as 7 ka BP in the June-July-August (JJA) season and throughout the entire annual cycle by 2-3 ka BP. Areas outside the regions of land disturbance are also affected, with virtually the whole globe experiencing significant temperature changes (predominantly cooling) by the early industrial period. The global annual mean temperature

  6. The role of large predators in maintaining riparian plant communities and river morphology

    NASA Astrophysics Data System (ADS)

    Beschta, Robert L.; Ripple, William J.

    2012-07-01

    Studies assessing the potential for large predators to affect, via trophic cascades, the dynamics of riparian plant communities and the morphology of river channels have been largely absent in the scientific literature. Herein, we consider the results of recent studies involving three national parks in the western United States: Yellowstone, Olympic, and Zion. Within each park, key large predators were extirpated or displaced in the early 1900s and subsequent browsing pressure by native ungulates initiated long-term declines in recruitment (i.e., growth of seedlings/sprouts into tall saplings and trees) of palatable woody species and impairment of other resources. Channel responses to browsing-suppressed riparian vegetation included increased widths of active channels via accelerated bank erosion, erosion of floodplains and erraces, increased area of unvegetated alluvium, channel incision, and increased braiding. A reduced frequency of overbank flows indicated these rivers have become increasingly disconnected from historical floodplains because of channel widening/incision. Results from Zion National Park also identified major biodiversity affects (e.g., reduced abundance of plant and animal species). Although these studies were conducted in national parks, results may have implications concerning riparian plant communities, biodiversity, and channel morphology for streams and rivers draining other public lands in the western US. It is on these lands that native and introduced ungulates have often heavily utilized riparian areas, largely in the absence of key predators, with significant consequences to plant communities and channels.

  7. Land improvement as part of environmental planning

    NASA Astrophysics Data System (ADS)

    Zupanc, Vesna; Grcman, Helena; Pintar, Marina; Kammerer, Gerhard

    2017-04-01

    Agricultural land degradation and fertile soil loss occur at an alarming rate: in a year, an area of roughly twelve million hectares is lost for agricultural production worldwide. The process of land degradation is a real-world driver and amplifier of instability. Given the scope and severity of the problem, calls for large scale land and soil rehabilitation are likely to be expected. In a case study of hydropower plant construction in Slovenia, the process of land rehabilitation is described from agricultural and environmental aspect considering changing environmental policy in the past five decades. Soil protection relies on national policy, stemming from policy which originated from soil protection initiative after severe increase in sealing of most fertile areas after second World War. Environmental protection policy evolved and adapted after the accession to European Union. Under certain circumstances, agricultural land is used for environmental rehabilitation measures, and of secondary status in the remediation measures decision process.

  8. Effects of land use on arbuscular mycorrhizal fungal communities in Estonia.

    PubMed

    Sepp, Siim-Kaarel; Jairus, Teele; Vasar, Martti; Zobel, Martin; Öpik, Maarja

    2018-04-01

    Arbuscular mycorrhizal (AM) fungal communities vary across habitat types, as well as across different land use types. Most relevant research, however, has focused on agricultural or other severely human-impacted ecosystems. Here, we compared AM fungal communities across six habitat types: calcareous grassland, overgrown ungrazed calcareous grassland, wooded meadow, farmyard lawn, boreonemoral forest, and boreonemoral forest clear-cut, exhibiting contrasting modes of land use. AM fungi in the roots of a single host plant species, Prunella vulgaris, and in its rhizosphere soil were identified using 454-sequencing from a total of 103 samples from 12 sites in Estonia. Mean AM fungal taxon richness per sample did not differ among habitats. AM fungal community composition, however, was significantly different among habitat types. Both abandonment and land use intensification (clearcutting; trampling combined with frequent mowing) changed AM fungal community composition. The AM fungal communities in different habitat types were most similar in the roots of the single host plant species and most distinct in soil samples, suggesting a non-random pattern in host-fungal taxon interactions. The results show that AM fungal taxon composition is driven by habitat type and land use intensity, while the plant host may act as an additional filter between the available and realized AM fungal species pool.

  9. Late Oligocene-Early Miocene compressional tectosedimentary episode and associated land-mammal faunas in the Andes of central Chile and adjacent Argentina (32 37°s)

    NASA Astrophysics Data System (ADS)

    Semper, Thierry; Marshall, Larry G.; Rivano, Sergio; Godoy, Estanislao

    1994-01-01

    A reassessment of the geologic and land-mammal fossil evidence used in attribution of a tectosedimentary episode in the Andes between 32 and 37°S to the Middle Eocene "Incaic tectonic phase" of Peru indicates that the episode occurred during Late Oligocene-Early Miocene times(~ 27-20 Ma). From west to east, three structural domains are recognized for this time span in the study area: a volcanic arc (Chile); a thin-skinned, E-verging fold-thrust belt (Cordillera Principal, Chile-Argentina border strip); and a foreland basin (Argentina). Initiation of thrusting in the Cordillera Principal fold-thrust belt produced the coeval initiation of sedimentation in the foreland basin of adjacent Argentina. This onset of foreland deposition postdates strata bearing a Divisaderan Land Mammal Age fauna (i.e. ~ 35-30 Ma) and is marked at ~ 36°30'S by the base of the "Rodados Lustrosos" conglomerates, which are conformably overlain by sedimentary rocks containing a Deseadan Land Mammal Age fauna (i.e. ~ 29-21 Ma). Geologic relationships between the thick volcanic Abanico (Coya-Machalí) and Farellones formations also demonstrate that this tectosedimentary episode practically ended at ~ 20 Ma at least in the volcanic arc, and was therefore roughly coeval with the major tectonic crisis (~ 27-19 Ma) known in northwestern Andean Bolivia some 1500 km to the north. This strongly suggests that a long, outstanding tectonic upheaval affected at least an extended 12-37°S segment of the Andean margin of South America during Late Oligocene and Early Miocene times.

  10. Computational Identification Raises a Riddle for Distribution of Putative NACHT NTPases in the Genome of Early Green Plants.

    PubMed

    Arya, Preeti; Acharya, Vishal

    2016-01-01

    NACHT NTPases and AP-ATPases belongs to STAND (signal transduction ATPases with numerous domain) P-loop NTPase class, which are known to be involved in defense signaling pathways and apoptosis regulation. The AP-ATPases (also known as NB-ARC) and NACHT NTPases are widely spread throughout all kingdoms of life except in plants, where only AP-ATPases have been extensively studied in the scenario of plant defense response against pathogen invasion and in hypersensitive response (HR). In the present study, we have employed a genome-wide survey (using stringent computational analysis) of 67 diverse organisms viz., archaebacteria, cyanobacteria, fungi, animalia and plantae to revisit the evolutionary history of these two STAND P-loop NTPases. This analysis divulged the presence of NACHT NTPases in the early green plants (green algae and the lycophyte) which had not been previously reported. These NACHT NTPases were known to be involved in diverse functional activities such as transcription regulation in addition to the defense signaling cascades depending on the domain association. In Chalmydomonas reinhardtii, a green algae, WD40 repeats found to be at the carboxyl-terminus of NACHT NTPases suggest probable role in apoptosis regulation. Moreover, the genome of Selaginella moellendorffii, an extant lycophyte, intriguingly shows the considerable number of both AP-ATPases and NACHT NTPases in contrast to a large repertoire of AP-ATPases in plants and emerge as an important node in the evolutionary tree of life. The large complement of AP-ATPases overtakes the function of NACHT NTPases and plausible reason behind the absence of the later in the plant lineages. The presence of NACHT NTPases in the early green plants and phyletic patterns results from this study raises a quandary for the distribution of this STAND P-loop NTPase with the apparent horizontal gene transfer from cyanobacteria.

  11. National Satellite Land Remote Sensing Data Archive

    USGS Publications Warehouse

    Faundeen, John L.; Kelly, Francis P.; Holm, Thomas M.; Nolt, Jenna E.

    2013-01-01

    The National Satellite Land Remote Sensing Data Archive (NSLRSDA) resides at the U.S. Geological Survey's (USGS) Earth Resources Observation and Science (EROS) Center. Through the Land Remote Sensing Policy Act of 1992, the U.S. Congress directed the Department of the Interior (DOI) to establish a permanent Government archive containing satellite remote sensing data of the Earth's land surface and to make this data easily accessible and readily available. This unique DOI/USGS archive provides a comprehensive, permanent, and impartial observational record of the planet's land surface obtained throughout more than five decades of satellite remote sensing. Satellite-derived data and information products are primary sources used to detect and understand changes such as deforestation, desertification, agricultural crop vigor, water quality, invasive plant species, and certain natural hazards such as flood extent and wildfire scars.

  12. Non-destructive Phenotyping of Lettuce Plants in Early Stages of Development with Optical Sensors

    PubMed Central

    Simko, Ivan; Hayes, Ryan J.; Furbank, Robert T.

    2016-01-01

    Rapid development of plants is important for the production of ‘baby-leaf’ lettuce that is harvested when plants reach the four- to eight-leaf stage of growth. However, environmental factors, such as high or low temperature, or elevated concentrations of salt, inhibit lettuce growth. Therefore, non-destructive evaluations of plants can provide valuable information to breeders and growers. The objective of the present study was to test the feasibility of using non-destructive phenotyping with optical sensors for the evaluations of lettuce plants in early stages of development. We performed the series of experiments to determine if hyperspectral imaging and chlorophyll fluorescence imaging can determine phenotypic changes manifested on lettuce plants subjected to the extreme temperature and salinity stress treatments. Our results indicate that top view optical sensors alone can accurately determine plant size to approximately 7 g fresh weight. Hyperspectral imaging analysis was able to detect changes in the total chlorophyll (RCC) and anthocyanin (RAC) content, while chlorophyll fluorescence imaging revealed photoinhibition and reduction of plant growth caused by the extreme growing temperatures (3 and 39°C) and salinity (100 mM NaCl). Though no significant correlation was found between Fv/Fm and decrease in plant growth due to stress when comparisons were made across multiple accessions, our results indicate that lettuce plants have a high adaptability to both low (3°C) and high (39°C) temperatures, with no permanent damage to photosynthetic apparatus and fast recovery of plants after moving them to the optimal (21°C) temperature. We have also detected a strong relationship between visual rating of the green- and red-leaf color intensity and RCC and RAC, respectively. Differences in RAC among accessions suggest that the selection for intense red color may be easier to perform at somewhat lower than the optimal temperature. This study serves as a proof of

  13. Biofuel crops with CAM photosynthesis: Economic potential on moisture-limited lands

    NASA Astrophysics Data System (ADS)

    Bartlett, Mark; Hartzell, Samantha; Porporato, Amilcare

    2017-04-01

    As the demand for food and renewable energy increases, the intelligent utilization of marginal lands is becoming increasingly critical. In marginal lands classified by limited rainfall or soil salinity, the cultivation of traditional C3 and C4 photosynthesis crops often is economically infeasible. However, in such lands, nontraditional crops with crassulacean acid metabolism (CAM) photosynthesis show great economic potential for cultivation. CAM crops including Opuntia (prickly pear) and Ananas (pineapple) achieve a water use efficiency which is three fold higher than C4 crops such as corn and 6-fold higher than C3 crops such as wheat, leading to a comparable annual productivity with only 20% of the water demand. This feature, combined with a shallow rooting depth and a high water storage capacity, allows CAM plants to take advantage of small, infrequent rainfall amounts in shallow, quickly draining soils. Furthermore, CAM plants typically have properties (e.g., high content of non-structural carbohydrates) that are favorable for biofuel production. Here, for marginal lands characterized by low soil moisture availability and/or high salinity, we assess the potential productivity and economic benefits of CAM plants. CAM productivity is estimated using a recently developed model which simulates CAM photosynthesis under a range of soil and climate conditions. From these results, we compare the energy and water resource inputs required by CAM plants to those required by more traditional C3 and C4 crops (corn, wheat, sorghum), and we evaluate the economic potential of CAM crops as sources of food, fodder, or biofuel in marginal soils. As precipitation events become more intense and infrequent, we show that even though marginal land area may increase, CAM crop cultivation shows great promise for maintaining high productivity with minimal water inputs. Our analysis indicates that on marginal lands, widespread cultivation of CAM crops as biofuel feedstock may help

  14. EARLY ENTRANCE COPRODUCTION PLANT

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    David Storm; Govanon Nongbri; Steve Decanio

    2004-01-12

    The overall objective of this project is the three phase development of an Early Entrance Coproduction Plant (EECP) which uses petroleum coke to produce at least one product from at least two of the following three categories: (1) electric power (or heat), (2) fuels, and (3) chemicals using ChevronTexaco's proprietary gasification technology. The objective of Phase I is to determine the feasibility and define the concept for the EECP located at a specific site; develop a Research, Development, and Testing (RD&T) Plan to mitigate technical risks and barriers; and prepare a Preliminary Project Financing Plan. The objective of Phase IImore » is to implement the work as outlined in the Phase I RD&T Plan to enhance the development and commercial acceptance of coproduction technology. The objective of Phase III is to develop an engineering design package and a financing and testing plan for an EECP located at a specific site. The project's intended result is to provide the necessary technical, economic, and environmental information needed by industry to move the EECP forward to detailed design, construction, and operation. The partners in this project are Texaco Energy Systems LLC or TES (a subsidiary of ChevronTexaco), General Electric (GE), Praxair, and Kellogg Brown & Root (KBR) in addition to the U.S. Department of Energy (DOE). TES is providing gasification technology and Fischer-Tropsch (F-T) technology developed by Rentech, Inc., GE is providing combustion turbine technology, Praxair is providing air separation technology, and KBR is providing engineering. During Phase I, a design basis for the Fischer-Tropsch Synthesis section was developed based on limited experience with the specified feed gas and operating conditions. The objective of this Task in Phase II RD&T work was to confirm the performance of the F-T reactor at the set design conditions. Although much of the research, development, and testing work were done by TES outside of this project, several

  15. Evaluating forest land development effects on private forestry in eastern Oregon.

    Treesearch

    Jeffrey D. Kline; David L. Azuma

    2007-01-01

    Research suggests that forest land development can reduce the productivity of remaining forest land because private forest owners reduce their investments in forest management. We developed empirical models describing forest stocking, thinning, harvest, and postharvest tree planting in eastern Oregon, as functions of stand and site characteristics, ownership, and...

  16. Sonoran Desert: Fragile Land of Extremes

    USGS Publications Warehouse

    Produced and Directed by Wessells, Stephen

    2003-01-01

    'Sonoran Desert: Fragile Land of Extremes' shows how biologists with the U.S. Geological Survey work with other scientists in an effort to better understand native plants and animals such as desert tortoises, saguaro cacti, and Gila monsters. Much of the program was shot in and around Saguaro National Park near Tucson, Arizona. Genetic detective work, using DNA, focuses on understanding the lives of tortoises. Studies of saguaros over many decades clarify how these amazing plants reproduce and thrive in the desert. Threats from fire, diseases in tortoises, and a growing human population motivate the scientists. Their work to identify how these organisms live and survive is a crucial step for the sound management of biological resources on public lands. This 28-minute program, USGS Open-File Report 03-305, was shot entirely in high definition video and produced by the USGS Western Ecological Research Center and Southwest Biological Science Center; produced and directed by Stephen Wessells, Western Region Office of Communications.

  17. 43 CFR 10010.9 - Apply NEPA early.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 43 Public Lands: Interior 2 2013-10-01 2013-10-01 false Apply NEPA early. 10010.9 Section 10010.9... Initiating the NEPA Process § 10010.9 Apply NEPA early. (a) The Commission will initiate early consultation and coordination with other Federal agencies having jurisdiction by law or special expertise with...

  18. 43 CFR 10010.9 - Apply NEPA early.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 43 Public Lands: Interior 2 2014-10-01 2014-10-01 false Apply NEPA early. 10010.9 Section 10010.9... Initiating the NEPA Process § 10010.9 Apply NEPA early. (a) The Commission will initiate early consultation and coordination with other Federal agencies having jurisdiction by law or special expertise with...

  19. 43 CFR 10010.9 - Apply NEPA early.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 43 Public Lands: Interior 2 2012-10-01 2012-10-01 false Apply NEPA early. 10010.9 Section 10010.9... Initiating the NEPA Process § 10010.9 Apply NEPA early. (a) The Commission will initiate early consultation and coordination with other Federal agencies having jurisdiction by law or special expertise with...

  20. Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.

    PubMed

    Johnson, Kim L; Cassin, Andrew M; Lonsdale, Andrew; Wong, Gane Ka-Shu; Soltis, Douglas E; Miles, Nicholas W; Melkonian, Michael; Melkonian, Barbara; Deyholos, Michael K; Leebens-Mack, James; Rothfels, Carl J; Stevenson, Dennis W; Graham, Sean W; Wang, Xumin; Wu, Shuangxiu; Pires, J Chris; Edger, Patrick P; Carpenter, Eric J; Bacic, Antony; Doblin, Monika S; Schultz, Carolyn J

    2017-06-01

    The carbohydrate-rich cell walls of land plants and algae have been the focus of much interest given the value of cell wall-based products to our current and future economies. Hydroxyproline-rich glycoproteins (HRGPs), a major group of wall glycoproteins, play important roles in plant growth and development, yet little is known about how they have evolved in parallel with the polysaccharide components of walls. We investigate the origins and evolution of the HRGP superfamily, which is commonly divided into three major multigene families: the arabinogalactan proteins (AGPs), extensins (EXTs), and proline-rich proteins. Using motif and amino acid bias, a newly developed bioinformatics pipeline, we identified HRGPs in sequences from the 1000 Plants transcriptome project (www.onekp.com). Our analyses provide new insights into the evolution of HRGPs across major evolutionary milestones, including the transition to land and the early radiation of angiosperms. Significantly, data mining reveals the origin of glycosylphosphatidylinositol (GPI)-anchored AGPs in green algae and a 3- to 4-fold increase in GPI-AGPs in liverworts and mosses. The first detection of cross-linking (CL)-EXTs is observed in bryophytes, which suggests that CL-EXTs arose though the juxtaposition of preexisting SP n EXT glycomotifs with refined Y-based motifs. We also detected the loss of CL-EXT in a few lineages, including the grass family (Poaceae), that have a cell wall composition distinct from other monocots and eudicots. A key challenge in HRGP research is tracking individual HRGPs throughout evolution. Using the 1000 Plants output, we were able to find putative orthologs of Arabidopsis pollen-specific GPI-AGPs in basal eudicots. © 2017 American Society of Plant Biologists. All Rights Reserved.

  1. Warming climate may negatively affect native forest understory plant richness and composition by increasing invasions of non-native plants

    NASA Astrophysics Data System (ADS)

    Dovciak, M.; Wason, J. W., III; Frair, J.; Lesser, M.; Hurst, J.

    2016-12-01

    Warming climate is often expected to cause poleward and upslope migrations of native plant species and facilitate the spread of non-native plants, and thus affect the composition and diversity of forest understory plant communities. However, changing climate can often interact with other components of global environmental change, and especially so with land use, which often varies along extant climatic gradients making it more difficult to predict species and biodiversity responses to changing climate. We used large national databases (USDA FIA, NLCD, and PRISM) within GLM and NMDS analytical frameworks to study the effects of climate (temperature and precipitation), and land management (type, fragmentation, time since disturbance) on the diversity and composition of native and non-native plant species in forest understories across large geographical (environmental) gradients of the northeastern United States. We tested how non-native and native species diversity and composition responded to existing climate gradients and land-use drivers, and we approximated how changing climate may affect both native and non-native species composition and richness under different climate change scenarios (+1.5, 2, and 4.8 degrees C). Many understory forest plant communities already contain large proportions of non-native plants, particularly so in relatively warmer and drier areas, at lower elevations, and in areas with more substantial land-use histories. On the other hand, cooler and moister areas, higher elevations, and areas used predominantly for forestry or nature conservation (i.e., large contiguous forest cover) were characterized by a low proportion of non-native plant species in terms of both species cover and richness. In contrast to native plants, non-native plant richness was related positively to mean annual temperature and negatively to precipitation. Mountain areas appeared to serve as refugia for native forest understory species under the current climate, but

  2. Coupled C, N and P Controls on Photosynthesis, Primary Production and Decomposition across a Land Use Intensification Gradient and Implications for Land Atmosphere C Exchange

    NASA Astrophysics Data System (ADS)

    Reinsch, S.; Emmett, B.; Cosby, J.; Mercado, L. M.; Smart, S.; Glanville, H.; Alberola, M. B.; Clark, D.; Robinson, E.; Jones, D.

    2015-12-01

    The coupling of C, N and P cycles has rarely been studied through the air- land-water continuum. This is essential if we are to enhance land-atmosphere models to account for N and P limitations. It is also important for developing integrated catchment management solutions to deliver improved water quality combined with a wide range of other ecosystem functions and services.We present results from a project which is part of the interdisciplinary pan-UK NERC Macronutrient Cycles Programme (macronutrient-cycles.ouce.ox.ac.uk/). Our aim is to quantify how coupled C, N & P cycles change across a land use intensification gradient from arable to grass, woodland and bog ecosystems and identify the implications for land-atmosphere C exchange. We focus on three key processes; photosynthesis, annual net primary productivity (ANPP) and decomposition and explore their consequences for biodiversity. Other aspects of the project track delivery to, and transformations within, the freshwater and coastal systems. When we explore relationships between C, N and P, results indicate all habitat types fall on a single land use intensification gradient. Stoichiometry suggests plant productivity is primarily N limited. P limitation occurs rarely but at all levels of intensification. Soil priming shows our soils are primarily C limited and, surprisingly, soil acidity provides one of the most powerful single predictors of processes and ecosystem services perhaps as it is a good integrator of many soil properties. Incorporating this knowledge into the UK land-atmosphere model JULES will be used to improve ANPP projections. These will then be used as inputs into a plant species model called MULTIMOVE to enable future scenarios of climate change, land use and air pollution on habitat suitability for > 1400 plant species to be explored. The enhanced Jules model will ensure both N and P limitations on C fluxes from above and below-ground are incorporated into future UK scenario applications.

  3. Impact of dynamic vegetation phenology on the simulated pan-Arctic land surface state

    NASA Astrophysics Data System (ADS)

    Teufel, Bernardo; Sushama, Laxmi; Arora, Vivek K.; Verseghy, Diana

    2018-03-01

    The pan-Arctic land surface is undergoing rapid changes in a warming climate, with near-surface permafrost projected to degrade significantly during the twenty-first century. Vegetation-related feedbacks have the potential to influence the rate of degradation of permafrost. In this study, the impact of dynamic phenology on the pan-Arctic land surface state, particularly near-surface permafrost, for the 1961-2100 period, is assessed by comparing two simulations of the Canadian Land Surface Scheme (CLASS)—one with dynamic phenology, modelled using the Canadian Terrestrial Ecosystem Model (CTEM), and the other with prescribed phenology. These simulations are forced by atmospheric data from a transient climate change simulation of the 5th generation Canadian Regional Climate Model (CRCM5) for the Representative Concentration Pathway 8.5 (RCP8.5). Comparison of the CLASS coupled to CTEM simulation to available observational estimates of plant area index, spatial distribution of permafrost and active layer thickness suggests that the model captures reasonably well the overall distribution of vegetation and permafrost. It is shown that the most important impact of dynamic phenology on the land surface occurs through albedo and it is demonstrated for the first time that vegetation control on albedo during late spring and early summer has the highest potential to impact the degradation of permafrost. While both simulations show extensive near-surface permafrost degradation by the end of the twenty-first century, the strong projected response of vegetation to climate warming and increasing CO2 concentrations in the coupled simulation results in accelerated permafrost degradation in the northernmost continuous permafrost regions.

  4. Evolution and diversity of plant cell walls: from algae to flowering plants.

    PubMed

    Popper, Zoë A; Michel, Gurvan; Hervé, Cécile; Domozych, David S; Willats, William G T; Tuohy, Maria G; Kloareg, Bernard; Stengel, Dagmar B

    2011-01-01

    All photosynthetic multicellular Eukaryotes, including land plants and algae, have cells that are surrounded by a dynamic, complex, carbohydrate-rich cell wall. The cell wall exerts considerable biological and biomechanical control over individual cells and organisms, thus playing a key role in their environmental interactions. This has resulted in compositional variation that is dependent on developmental stage, cell type, and season. Further variation is evident that has a phylogenetic basis. Plants and algae have a complex phylogenetic history, including acquisition of genes responsible for carbohydrate synthesis and modification through a series of primary (leading to red algae, green algae, and land plants) and secondary (generating brown algae, diatoms, and dinoflagellates) endosymbiotic events. Therefore, organisms that have the shared features of photosynthesis and possession of a cell wall do not form a monophyletic group. Yet they contain some common wall components that can be explained increasingly by genetic and biochemical evidence.

  5. Remote Sensing of the Environmental Impacts of Utility-Scale Solar Energy Plants

    NASA Astrophysics Data System (ADS)

    Edalat, Mohammad Masih

    Solar energy has many environmental benefits compared with fossil fuels but solar farming can have environmental impacts especially during construction and development. Thus, in order to enhance environmental sustainability, it is imperative to understand the environmental impacts of utility-scale solar energy (USSE) plants. During recent decades, remote sensing techniques and geographic information systems have become standard techniques in environmental applications. In this study, the environmental impacts of USSE plants are investigated by analyzing changes to land surface characteristics using remote sensing. The surface characteristics studied include land cover, land surface temperature, and hydrological response whereas changes are mapped by comparing pre-, syn-, and post- construction conditions. In order to study the effects of USSE facilities on land cover, the changes in the land cover are measured and analyzed inside and around two USSE facilities. The principal component analysis (PCA), minimum noise fraction (MNF), and spectral mixture analysis (SMA) of remote sensing images are used to estimate the subpixel fraction of four land surface endmembers: high-albedo, low-albedo, shadow, and vegetation. The results revealed that USSE plants do not significantly impact land cover outside the plant boundary. However, land-cover radiative characteristics within the plant area are significantly affected after construction. During the construction phase, site preparation practices including shrub removal and land grading increase high-albedo and decrease low-albedo fractions. The thermal effects of USSE facilities are studied by the time series analysis of remote sensing land surface temperature (LST). A statistical trend analysis of LST, with seasonal trends removed is performed with a particular consideration of panel shadowing by analyzing sun angles for different times of year. The results revealed that the LST outside the boundary of the solar plant does

  6. The role of plant-microbiome interactions in weed establishment and control.

    PubMed

    Trognitz, Friederike; Hackl, Evelyn; Widhalm, Siegrid; Sessitsch, Angela

    2016-10-01

    The soil microbiome plays an important role in the establishment of weeds and invasive plants. They associate with microorganisms supporting their growth and health. Weed management strategies, like tillage and herbicide treatments, to control weeds generally alter soil structure going alongside with changes in the microbial community. Once a weed population establishes in the field, the plants build up a close relationship with the available microorganisms. Seeds or vegetative organs overwinter in soil and select early in the season their own microbiome before crop plants start to vegetate. Weed and crop plants compete for light, nutrition and water, but may differently interact with soil microorganisms. The development of new sequencing technologies for analyzing soil microbiomes has opened up the possibility for in depth analysis of the interaction between 'undesired' plants and crop plants under different management systems. These findings will help us to understand the functions of microorganisms involved in crop productivity and plant health, weed establishment and weed prevention. Exploitation of the knowledge offers the possibility to search for new biocontrol methods against weeds based on soil and plant-associated microorganisms. This review discusses the recent advances in understanding the functions of microbial communities for weed/invasive plant establishment and shows new ways to use plant-associated microorganisms to control weeds and invasive plants in different land management systems. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  7. Transcriptomic evidence for the evolution of shoot meristem function in sporophyte-dominant land plants through concerted selection of ancestral gametophytic and sporophytic genetic programs.

    PubMed

    Frank, Margaret H; Scanlon, Michael J

    2015-02-01

    Alternation of generations, in which the haploid and diploid stages of the life cycle are each represented by multicellular forms that differ in their morphology, is a defining feature of the land plants (embryophytes). Anciently derived lineages of embryophytes grow predominately in the haploid gametophytic generation from apical cells that give rise to the photosynthetic body of the plant. More recently evolved plant lineages have multicellular shoot apical meristems (SAMs), and photosynthetic shoot development is restricted to the sporophyte generation. The molecular genetic basis for this evolutionary shift from gametophyte-dominant to sporophyte-dominant life cycles remains a major question in the study of land plant evolution. We used laser microdissection and next generation RNA sequencing to address whether angiosperm meristem patterning genes expressed in the sporophytic SAM of Zea mays are expressed in the gametophytic apical cells, or in the determinate sporophytes, of the model bryophytes Marchantia polymorpha and Physcomitrella patens. A wealth of upregulated genes involved in stem cell maintenance and organogenesis are identified in the maize SAM and in both the gametophytic apical cell and sporophyte of moss, but not in Marchantia. Significantly, meiosis-specific genetic programs are expressed in bryophyte sporophytes, long before the onset of sporogenesis. Our data suggest that this upregulated accumulation of meiotic gene transcripts suppresses indeterminate cell fate in the Physcomitrella sporophyte, and overrides the observed accumulation of meristem patterning genes. A model for the evolution of indeterminate growth in the sporophytic generation through the concerted selection of ancestral meristem gene programs from gametophyte-dominant lineages is proposed. © The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  8. Soil organic phosphorus in soils under different land use systems in northeast Germany

    NASA Astrophysics Data System (ADS)

    Slazak, Anna; Freese, Dirk; Hüttl, Reinhard F.

    2010-05-01

    Phosphorus (P) is commonly known as a major plant nutrient, which can act as a limiting factor for plant growth in many ecosystems, including different land use systems. Organic P (Po), transformations in soil are important in determining the overall biological availability of P and additionally Po depletion is caused by land cultivation. It is expected that changes of land use modifies the distribution of soil P among the various P-pools (Ptotal, Plabile, Po), where the Plabile forms are considered to be readily available to plants and Po plays an important role with P nutrition supply for plants. The aim of the study was to measure the different soil P pools under different land use systems. The study was carried out in northeast of Brandenburg in Germany. Different land use systems were studied: i) different in age pine-oak mixed forest stands, ii) silvopastoral land, iii) arable lands. Samples were taken from two mineral soil layers: 0-10 and 10-20 cm. Recently, a variety of analytical methods are available to determine specific Po compounds in soils. The different P forms in the soil were obtained by a sequential P fractionation by using acid and alkaline extractants, which mean that single samples were subjected to increasingly stronger extractants, consequently separating the soil P into fractions based on P solubility. The soil Ptotal for the forest stands ranged from 100 to 183 mg kg -1 whereas Po from 77 to 148 mg kg -1. The Po and Plabile in both soil layers increased significantly with increase of age-old oak trees. The most available-P fraction was Plabile predominate in the oldest pine-oak forest stand, accounting for 29% of soil Ptotal. For the silvopasture and arable study sites the Ptotal content was comparable. However, the highest value of Ptotal was measured in the 30 years old silvopastoral system with 685 mg kg-1 and 728 mg kg-1 at 0-10 cm and 10-20 cm depth, respectively than in arable lands. The results have shown that the 30 years old

  9. Land-Use Intensity of Electricity Production: Comparison Across Multiple Sources

    NASA Astrophysics Data System (ADS)

    Swain, M.; Lovering, J.; Blomqvist, L.; Nordhaus, T.; Hernandez, R. R.

    2015-12-01

    Land is an increasingly scarce global resource that is subject to competing pressures from agriculture, human settlement, and energy development. As countries concerned about climate change seek to decarbonize their power sectors, renewable energy sources like wind and solar offer obvious advantages. However, the land needed for new energy infrastructure is also an important environmental consideration. The land requirement of different electricity sources varies considerably, but there are very few studies that offer a normalized comparison. In this paper, we use meta-analysis to calculate the land-use intensity (LUI) of the following electricity generation sources: wind, solar photovoltaic (PV), concentrated solar power (CSP), hydropower, geothermal, nuclear, biomass, natural gas, and coal. We used data from existing studies as well as original data gathered from public records and geospatial analysis. Our land-use metric includes land needed for the generation facility (e.g., power plant or wind farm) as well as the area needed to mine fuel for natural gas, coal, and nuclear power plants. Our results found the lowest total LUI for nuclear power (115 ha/TWh/y) and the highest LUI for biomass (114,817 ha/TWh/y). Solar PV and CSP had a considerably lower LUI than wind power, but both were an order of magnitude higher than fossil fuels (which ranged from 435 ha/TWh/y for natural gas to 579 ha/TWh/y for coal). Our results suggest that a large build-out of renewable electricity, though it would offer many environmental advantages over fossil fuel power sources, would require considerable land area. Among low-carbon energy sources, relatively compact sources like nuclear and solar have the potential to reduce land requirements.

  10. Plant-arthropod interaction in the Early Cretaceous (Berriasian) of the Araripe Basin, Brazil

    NASA Astrophysics Data System (ADS)

    Pires, Etiene Fabbrin; Sommer, Margot Guerra

    2009-02-01

    Plant-arthropod interactions provide the first relevant data for addressing evidence of phytophagy for an assemblage of coniferous silicified woods from the pre-rift phase in the Araripe Basin, Brazil. A complex system of borings, sometimes filled with small, oval to hexagonal coprolites, allow inferences to be made about the activities of termites (Isoptera). Previous dendrological data indicated that the climate during the Early Cretaceous on the landmasses of the northern Afro-Brazilian Depression was dry and savanna like, where termite borings were common. Features of wood preservation demonstrate that the damage was probably caused by herbivores, not detritivores.

  11. Geospatial assessment of invasive plants on reclaimed mines in Alabama

    Treesearch

    D. Lemke; C.J. Schweitzer; W. Tadesse; Y. Wang; J.A. Brown

    2013-01-01

    Throughout the world, the invasion of nonnative plants is an increasing threat to native biodiversity and ecosystem sustainability. Invasion is especially prevalent in areas affected by land transformation and disturbance. Surface mines are a major land transformation, and thus may promote the establishment and persistence of invasive plant communities. Using the Shale...

  12. 43 CFR 46.200 - Applying NEPA early.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 43 Public Lands: Interior 1 2014-10-01 2014-10-01 false Applying NEPA early. 46.200 Section 46.200... ENVIRONMENTAL POLICY ACT OF 1969 Initiating the NEPA Process § 46.200 Applying NEPA early. (a) For any... environmental impacts, bureaus must coordinate, as early as feasible, with: (1) Any other bureaus or Federal...

  13. 43 CFR 46.200 - Applying NEPA early.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 43 Public Lands: Interior 1 2013-10-01 2013-10-01 false Applying NEPA early. 46.200 Section 46.200... ENVIRONMENTAL POLICY ACT OF 1969 Initiating the NEPA Process § 46.200 Applying NEPA early. (a) For any... environmental impacts, bureaus must coordinate, as early as feasible, with: (1) Any other bureaus or Federal...

  14. 43 CFR 46.200 - Applying NEPA early.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 43 Public Lands: Interior 1 2012-10-01 2011-10-01 true Applying NEPA early. 46.200 Section 46.200... ENVIRONMENTAL POLICY ACT OF 1969 Initiating the NEPA Process § 46.200 Applying NEPA early. (a) For any... environmental impacts, bureaus must coordinate, as early as feasible, with: (1) Any other bureaus or Federal...

  15. 43 CFR 46.200 - Applying NEPA early.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 43 Public Lands: Interior 1 2011-10-01 2011-10-01 false Applying NEPA early. 46.200 Section 46.200... ENVIRONMENTAL POLICY ACT OF 1969 Initiating the NEPA Process § 46.200 Applying NEPA early. (a) For any... environmental impacts, bureaus must coordinate, as early as feasible, with: (1) Any other bureaus or Federal...

  16. Global scale analysis and evaluation of an improved mechanistic representation of plant nitrogen and carbon dynamics in the Community Land Model (CLM)

    NASA Astrophysics Data System (ADS)

    Ghimire, B.; Riley, W. J.; Koven, C. D.; Randerson, J. T.; Mu, M.; Kattge, J.; Rogers, A.; Reich, P. B.

    2014-12-01

    In many ecosystems, nitrogen is the most limiting nutrient for plant growth and productivity. However mechanistic representation of nitrogen uptake linked to root traits, and functional nitrogen allocation among different leaf enzymes involved in respiration and photosynthesis is currently lacking in Earth System models. The linkage between nitrogen availability and plant productivity is simplistically represented by potential photosynthesis rates, and is subsequently downregulated depending on nitrogen supply and other nitrogen consumers in the model (e.g., nitrification). This type of potential photosynthesis rate calculation is problematic for several reasons. Firstly, plants do not photosynthesize at potential rates and then downregulate. Secondly, there is considerable subjectivity on the meaning of potential photosynthesis rates. Thirdly, there exists lack of understanding on modeling these potential photosynthesis rates in a changing climate. In addition to model structural issues in representing photosynthesis rates, the role of plant roots in nutrient acquisition have been largely ignored in Earth System models. For example, in CLM4.5, nitrogen uptake is linked to leaf level processes (e.g., primarily productivity) rather than root scale process involved in nitrogen uptake. We present a new plant model for CLM with an improved mechanistic presentation of plant nitrogen uptake based on root scale Michaelis Menten kinetics, and stronger linkages between leaf nitrogen and plant productivity by inferring relationships observed in global databases of plant traits (including the TRY database and several individual studies). We also incorporate improved representation of plant nitrogen leaf allocation, especially in tropical regions where significant over-prediction of plant growth and productivity in CLM4.5 simulations exist. We evaluate our improved global model simulations using the International Land Model Benchmarking (ILAMB) framework. We conclude that

  17. Microbial Community Structure in the Rhizosphere of Rice Plants

    PubMed Central

    Breidenbach, Björn; Pump, Judith; Dumont, Marc G.

    2016-01-01

    The microbial community in the rhizosphere environment is critical for the health of land plants and the processing of soil organic matter. The objective of this study was to determine the extent to which rice plants shape the microbial community in rice field soil over the course of a growing season. Rice (Oryza sativa) was cultivated under greenhouse conditions in rice field soil from Vercelli, Italy and the microbial community in the rhizosphere of planted soil microcosms was characterized at four plant growth stages using quantitative PCR and 16S rRNA gene pyrotag analysis and compared to that of unplanted bulk soil. The abundances of 16S rRNA genes in the rice rhizosphere were on average twice that of unplanted bulk soil, indicating a stimulation of microbial growth in the rhizosphere. Soil environment type (i.e., rhizosphere versus bulk soil) had a greater effect on the community structure than did time (e.g., plant growth stage). Numerous phyla were affected by the presence of rice plants, but the strongest effects were observed for Gemmatimonadetes, Proteobacteria, and Verrucomicrobia. With respect to functional groups of microorganisms, potential iron reducers (e.g., Geobacter, Anaeromyxobacter) and fermenters (e.g., Clostridiaceae, Opitutaceae) were notably enriched in the rhizosphere environment. A Herbaspirillum species was always more abundant in the rhizosphere than bulk soil and was enriched in the rhizosphere during the early stage of plant growth. PMID:26793175

  18. Land-markings: 12 Journeys through 9/11 Living Memorials [DVD

    Treesearch

    Erika S. Svendsen; Lindsay K. Campbell; Phu Duong

    2007-01-01

    The Land-markings DVD was created from a multimedia exhibition of 12 digitally authored journeys through more than 700 living memorials nationwide. Land-markings captures stories and images of how we use the landscape as a way to remember people, places, and events. Ranging from single tree plantings, to the creation of new parks, to the restoration of existing forests...

  19. A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls.

    PubMed

    Wang, Maojun; Yuan, Daojun; Gao, Wenhui; Li, Yang; Tan, Jiafu; Zhang, Xianlong

    2013-01-01

    Pectins are fundamental polysaccharides in the plant primary cell wall. Pectins are synthesized and secreted to cell walls as highly methyl-esterified polymers and then demethyl-esterified by pectin methylesterases (PMEs), which are spatially regulated by pectin methylesterase inhibitors (PMEIs). Although PME and PMEI genes are pivotal in plant cell wall formation, few studies have focused on the evolutionary patterns of the PME and PMEI gene families. In this study, the gene origin, evolution, and expression diversity of these two families were systematically analyzed using 11 representative species, including algae, bryophytes, lycophytes and flowering land plants. The results show that 1) for the two subfamilies (PME and proPME) of PME, the origin of the PME subfamily is consistent with the appearance of pectins in early charophyte cell walls, 2) Whole genome duplication (WGD) and tandem duplication contribute to the expansion of proPME and PMEI families in land plants, 3) Evidence of selection pressure shows that the proPME and PMEI families have rapidly evolved, particularly the PMEI family in vascular plants, and 4) Comparative expression profile analysis of the two families indicates that the eudicot Arabidopsis and monocot rice have different expression patterns. In addition, the gene structure and sequence analyses show that the origin of the PMEI domain may be derived from the neofunctionalization of the pro domain after WGD. This study will advance the evolutionary understanding of the PME and PMEI families and plant cell wall development.

  20. Upper Washita River experimental watersheds: Land cover data sets (1974-2007) for two southwestern Oklahoma agricultural watersheds

    USDA-ARS?s Scientific Manuscript database

    A retrospective land cover analysis covering the time period from the early 1970s to early 1990s was conducted to gain a sense of the dynamics of land cover changes on the Little Washita River and Fort Cobb Reservoir experimental watersheds (LWREW, FCREW), located in southwestern Oklahoma. This stu...