Coordinated Development of Muscles and Tendon-Like Structures: Early Interactions in the Drosophila Leg.

PubMed

Soler, Cedric; Laddada, Lilia; Jagla, Krzysztof

2016-01-01

The formation of the musculoskeletal system is a remarkable example of tissue assembly. In both vertebrates and invertebrates, precise connectivity between muscles and skeleton (or exoskeleton) via tendons or equivalent structures is fundamental for movement and stability of the body. The molecular and cellular processes underpinning muscle formation are well-established and significant advances have been made in understanding tendon development. However, the mechanisms contributing to proper connection between these two tissues have received less attention. Observations of coordinated development of tendons and muscles suggest these tissues may interact during the different steps in their development. There is growing evidence that, depending on animal model and muscle type, these interactions can take place from progenitor induction to the final step of the formation of the musculoskeletal system. Here, we briefly review and compare the mechanisms behind muscle and tendon interaction throughout the development of vertebrates and Drosophila before going on to discuss our recent findings on the coordinated development of muscles and tendon-like structures in Drosophila leg. By altering apodeme formation (the functional Drosophila equivalent of tendons in vertebrates) during the early steps of leg development, we affect the spatial localization of subsequent myoblasts. These findings provide the first evidence of the developmental impact of early interactions between muscle and tendon-like precursors, and confirm the appendicular Drosophila muscle system as a valuable model for studying these processes.

Coordinated Development of Muscles and Tendon-Like Structures: Early Interactions in the Drosophila Leg

PubMed Central

Soler, Cedric; Laddada, Lilia; Jagla, Krzysztof

2016-01-01

The formation of the musculoskeletal system is a remarkable example of tissue assembly. In both vertebrates and invertebrates, precise connectivity between muscles and skeleton (or exoskeleton) via tendons or equivalent structures is fundamental for movement and stability of the body. The molecular and cellular processes underpinning muscle formation are well-established and significant advances have been made in understanding tendon development. However, the mechanisms contributing to proper connection between these two tissues have received less attention. Observations of coordinated development of tendons and muscles suggest these tissues may interact during the different steps in their development. There is growing evidence that, depending on animal model and muscle type, these interactions can take place from progenitor induction to the final step of the formation of the musculoskeletal system. Here, we briefly review and compare the mechanisms behind muscle and tendon interaction throughout the development of vertebrates and Drosophila before going on to discuss our recent findings on the coordinated development of muscles and tendon-like structures in Drosophila leg. By altering apodeme formation (the functional Drosophila equivalent of tendons in vertebrates) during the early steps of leg development, we affect the spatial localization of subsequent myoblasts. These findings provide the first evidence of the developmental impact of early interactions between muscle and tendon-like precursors, and confirm the appendicular Drosophila muscle system as a valuable model for studying these processes. PMID:26869938

The formation of galaxies

NASA Technical Reports Server (NTRS)

Efstathiou, G.; Silk, J.

1983-01-01

Current models of galaxy formation are examined in a review of recent observational and theoretical studies. Observational data on elliptical galaxies, disk galaxies, luminosity functions, clustering, and angular fluctuations in the cosmic microwave background are summarized. Theoretical aspects discussed include the origin and early evolution of small fluctuations, matter and radiation fluctuations, the formation of large-scale structure, dissipationless galaxy formation, galaxy mergers, dissipational galaxy formation, and the implications of particle physics (GUTs, massive neutrinos, and gravitinos) for cosmology.

Formation of an active thrust triangle zone associated with structural inversion in a subduction setting, eastern New Zealand

NASA Astrophysics Data System (ADS)

Barnes, Philip M.; Nicol, Andrew

2004-02-01

We analyze a thrust triangle zone, which underlies the continental shelf of Hawke Bay, eastern New Zealand, within the Hikurangi subduction margin. This triangle zone differs from many other examples in that it is active, 90 km from the leading edge of the overriding plate, and formed due to polyphase deformation involving opposed dipping thrust duplex and backthrust, with the later structure forming in response to inversion of an extensional graben. The component structures of the zone mainly developed sequentially rather than synchronously. High-quality marine seismic reflection lines, tied to well and seabed samples, reveal the three-dimensional structure of the zone, together with its 25 Myr evolution and late Quaternary activity. The triangle zone occurs in the lateral overlap between a stack of NW dipping blind thrusts, and a principal backthrust, the Kidnappers fault. The NW dipping thrusts initiated in the early-middle Miocene during the early stages of subduction, with subsequent thrust duplex formation producing major uplift and erosion in the late Miocene-early Pliocene. The active backthrust formed during the late Miocene to early Pliocene as a thin-skinned listric extensional fault confined to the cover sequence. Structural inversion of the extensional fault commenced in the early-middle Pliocene, produced the backthrust and marks the formation of the thrust triangle zone. The thrust duplex and backthrust accrued strain following inversion; however, the later structure accommodated most of the surface deformation in the Quaternary. Section balancing of the triangle zone together with a detailed analysis of reverse displacements along the backthrust reveal spatial and temporal variations of strain accumulation on the two principal components of the zone. Although the formation of the triangle zone is strongly influenced by regional tectonics of the subduction system, these variations may also, in part, reflect local fault interaction. For example, high Quaternary displacement rates on the backthrust accounts for ˜70% of the displacement loss that occurs on the southern segments of the overlapping, Lachlan fault. Understanding the tectonic evolution of such complex, polyphase thrust triangle zones requires the preservation of growth strata that record sequential deformation history. In the absence of such data, synchroneity of opposed dipping thrusts in triangle zones cannot be assumed.

The role of Proteus mirabilis cell wall features in biofilm formation.

PubMed

Czerwonka, Grzegorz; Guzy, Anna; Kałuża, Klaudia; Grosicka, Michalina; Dańczuk, Magdalena; Lechowicz, Łukasz; Gmiter, Dawid; Kowalczyk, Paweł; Kaca, Wiesław

2016-11-01

Biofilms formed by Proteus mirabilis strains are a serious medical problem, especially in the case of urinary tract infections. Early stages of biofilm formation, such as reversible and irreversible adhesion, are essential for bacteria to form biofilm and avoid eradication by antibiotic therapy. Adhesion to solid surfaces is a complex process where numerous factors play a role, where hydrophobic and electrostatic interactions with solid surface seem to be substantial. Cell surface hydrophobicity and electrokinetic potential of bacterial cells depend on their surface composition and structure, where lipopolysaccharide, in Gram-negative bacteria, is prevailing. Our studies focused on clinical and laboratory P. mirabilis strains, where laboratory strains have determined LPS structures. Adherence and biofilm formation tests revealed significant differences between strains adhered in early stages of biofilm formation. Amounts of formed biofilm were expressed by the absorption of crystal violet. Higher biofilm amounts were formed by the strains with more negative values of zeta potential. In contrast, high cell surface hydrophobicity correlated with low biofilm amount.

Early stages of styrene-isoprene copolymerization in gas phase clusters probed by resonance enhanced multiphoton ionization.

PubMed

Mahmoud, Hatem; Germanenko, Igor N; El-Shall, M Samy

2006-04-06

We present direct evidence for the formation of the covalent bonded styrene (isoprene)(2) oligomer and the isoprene dimer ions following resonance ionization of the gas phase styrene-isoprene binary clusters. The application of resonance ionization to study polymerization reactions in clusters provides new information on the structure and mechanism of formation of the early stages of polymerization and holds considerable promise for the discovery of new initiation mechanisms and for the development of novel materials with unique properties.

Liquid Crystal Enabled Early Stage Detection of Beta Amyloid Formation on Lipid Monolayers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sadati, Monirosadat; Apik, Aslin Izmitli; Armas-Perez, Julio C.

2015-09-09

Liquid crystals (LCs) can serve as sensitive reporters of interfacial events, and this property has been used for sensing of synthetic or biological toxins. Here it is demonstrated that LCs can distinguish distinct molecular motifs and exhibit a specific response to beta-sheet structures. That property is used to detect the formation of highly toxic protofibrils involved in neurodegenerative diseases, where it is crucial to develop methods that probe the early-stage aggregation of amyloidogenic peptides in the vicinity of biological membranes. In the proposed method, the amyloid fibrils formed at the lipid-decorated LC interface can change the orientation of LCs andmore » form elongated and branched structures that are amplified by the mesogenic medium; however, nonamyloidogenic peptides form ellipsoidal domains of tilted LCs. Moreover, a theoretical and computational analysis is used to reveal the underlying structure of the LC, thereby providing a detailed molecular-level view of the interactions and mechanisms responsible for such motifs. The corresponding signatures can be detected at nanomolar concentrations of peptide by polarized light microscopy and much earlier than the ones that can be identified by fluorescence-based techniques. As such, it offers the potential for early diagnoses of neurodegenerative diseases and for facile testing of inhibitors of amyloid formation.« less

The crustal structure of the southern Argentine margin

NASA Astrophysics Data System (ADS)

Becker, Katharina; Franke, Dieter; Schnabel, Michael; Schreckenberger, Bernd; Heyde, Ingo; Krawczyk, Charlotte M.

2012-06-01

Multichannel reflection seismic profiles, combined with gravimetric and magnetic data provide insight into the crustal structure of the southernmost Argentine margin, at the transition from a rifted to a transform margin and outline the extent of the North Falkland Graben. Based on these data, we establish a regional stratigraphic model for the post-rift sediments, comprising six marker horizons with a new formation in the Barremian/Lower Cretaceous. Our observations support that a N-S trending subsidiary branch of the North Falkland Graben continues along the continental shelf and slope to the Argentine basin. During the rift phase, a wide shelf area was affected by the E-W extension, subsequently forming the North Falkland Graben and the subsidiary branch along which finally breakup occurred. We propose the division of the margin in two segments: a N-S trending rifted margin and an E-W trending transform margin. This is further underpinned by crustal scale gravity modelling. Three different tectono-dynamic processes shaped the study area. (1) The Triassic/Early Jurassic extensional phase resulting in the formation of the North Falkland Graben and additional narrower rift grabens ended synchronously with the breakup of the South Atlantic in the early Valanginian. (2) Extensional phase related to the opening of the South Atlantic. (3) The transform margin was active in the study area from about Hauterivian times and activity lasted until late Cretaceous/early Cenozoic. Both, the rifted margin and the transform margin are magma-poor. Very limited structures may have a volcanic origin but are suggested to be post-rift. The oceanic crust was found to be unusually thin, indicating a deficit in magma supply during formation. These findings in combination with the proposed breakup age in the early Valanginian that considerably predates the formation of the Paraná-Etendeka continental flood basalt provinces in Brazil and Namibia question the influence of the Tristan da Cunha hotspot during the initial formation of the South Atlantic.

On the role of extracellular polymeric substances during early stages of Xylella fastidiosa biofilm formation.

PubMed

Lorite, Gabriela S; de Souza, Alessandra A; Neubauer, Daniel; Mizaikoff, Boris; Kranz, Christine; Cotta, Mônica A

2013-02-01

The structural integrity and protection of bacterial biofilms are intrinsically associated with a matrix of extracellular polymeric substances (EPS) produced by the bacteria cells. However, the role of these substances during biofilm adhesion to a surface remains largely unclear. In this study, the influence of EPS on Xylella fastidiosa biofilm formation was investigated. This bacterium is associated with economically important plant diseases; it presents a slow growth rate and thus allows us to pinpoint more precisely the early stages of cell-surface adhesion. Scanning electron microscopy and atomic force microscopy show evidence of EPS production in such early stages and around individual bacteria cells attached to the substrate surface even a few hours after inoculation. In addition, EPS formation was investigated via attenuated total reflectance (ATR) Fourier transform infrared spectroscopy (FTIR). To this end, X. fastidiosa cells were inoculated within an ATR liquid cell assembly. IR-ATR spectra clearly reveal EPS formation already during the early stages of X. fastidiosa biofilm formation, thereby providing supporting evidence for the hypothesis of the relevance of the EPS contribution to the adhesion process. Copyright © 2012 Elsevier B.V. All rights reserved.

Black hole formation from the gravitational collapse of a nonspherical network of structures

NASA Astrophysics Data System (ADS)

Delgado Gaspar, Ismael; Hidalgo, Juan Carlos; Sussman, Roberto A.; Quiros, Israel

2018-05-01

We examine the gravitational collapse and black hole formation of multiple nonspherical configurations constructed from Szekeres dust models with positive spatial curvature that smoothly match to a Schwarzschild exterior. These configurations are made of an almost spherical central core region surrounded by a network of "pancake-like" overdensities and voids with spatial positions prescribed through standard initial conditions. We show that a full collapse into a focusing singularity, without shell crossings appearing before the formation of an apparent horizon, is not possible unless the full configuration becomes exactly or almost spherical. Seeking for black hole formation, we demand that shell crossings are covered by the apparent horizon. This requires very special fine-tuned initial conditions that impose very strong and unrealistic constraints on the total black hole mass and full collapse time. As a consequence, nonspherical nonrotating dust sources cannot furnish even minimally realistic toy models of black hole formation at astrophysical scales: demanding realistic collapse time scales yields huge unrealistic black hole masses, while simulations of typical astrophysical black hole masses collapse in unrealistically small times. We note, however, that the resulting time-mass constraint is compatible with early Universe models of primordial black hole formation, suitable in early dust-like environments. Finally, we argue that the shell crossings appearing when nonspherical dust structures collapse are an indicator that such structures do not form galactic mass black holes but virialize into stable stationary objects.

Exploration in Ordovician of central Michigan Basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fisher, J.H.; Barratt, M.W.

1985-12-01

Deep wells in the central Michigan basin have provided sufficient data to define two new mappable formations - the Foster Formation and the Bruggers Formation. Recent conodont studies have corrected the age assignments of the strata containing these formations. Previously, the lower section (Foster) was classified as mostly Cambrian, and the upper unit (Bruggers) was identified as Early Ordovician. Conodont identifications indicate an Early and Middle Ordovician age for the Foster Formation and a Middle Ordovician age for the Bruggers Formation. The Michigan basin existed in embryonic form in the Late Cambrian, but the full outline of the present-day basinmore » did not develop until Early Ordovician. Gas and condensate are produced from the Bruggers Formation as deep as 11,252 ft (3429 m). Geothermal investigations suggest that gas production is possible to the base of the Paleozoic section in the central basin (17,000 ft or 5181 m). Paleotemperatures were higher during the Paleozoic owing to 3000-4000 ft (914-1291 m) of additional sedimentary cover. Five wells are producing from the Bruggers Formation. All are deeper tests in anticlines producing from Devonian reservoirs discovered earlier. The structures are the result of vertical movements of basement fault blocks activated by regional stresses. 12 figures, 2 tables.« less

Categorical Structure among Shared Features in Networks of Early-Learned Nouns

ERIC Educational Resources Information Center

Hills, Thomas T.; Maouene, Mounir; Maouene, Josita; Sheya, Adam; Smith, Linda

2009-01-01

The shared features that characterize the noun categories that young children learn first are a formative basis of the human category system. To investigate the potential categorical information contained in the features of early-learned nouns, we examine the graph-theoretic properties of noun-feature networks. The networks are built from the…

Investigation of cellular detonation structure formation via linear stability theory and 2D and 3D numerical simulations

NASA Astrophysics Data System (ADS)

Borisov, S. P.; Kudryavtsev, A. N.

2017-10-01

Linear and nonlinear stages of the instability of a plane detonation wave (DW) and the subsequent process of formation of cellular detonation structure are investigated. A simple model with one-step irreversible chemical reaction is used. The linear analysis is employed to predict the DW front structure at the early stages of its formation. An emerging eigenvalue problem is solved with a global method using a Chebyshev pseudospectral method and the LAPACK software library. A local iterative shooting procedure is used for eigenvalue refinement. Numerical simulations of a propagation of a DW in plane and rectangular channels are performed with a shock capturing WENO scheme of 5th order. A special method of a computational domain shift is implemented in order to maintain the DW in the domain. It is shown that the linear analysis gives certain predictions about the DW structure that are in agreement with the numerical simulations of early stages of DW propagation. However, at later stages, a merger of detonation cells occurs so that their number is approximately halved. Computations of DW propagation in a square channel reveal two different types of spatial structure of the DW front, "rectangular" and "diagonal" types. A spontaneous transition from the rectangular to diagonal type of structure is observed during propagation of the DW.

Early Cambrian wave-formed shoreline deposits: the Hardeberga Formation, Bornholm, Denmark

NASA Astrophysics Data System (ADS)

Clemmensen, Lars B.; Glad, Aslaug C.; Pedersen, Gunver K.

2017-09-01

During the early Cambrian, the Danish island Bornholm was situated on the northern edge of the continent Baltica with palaeolatitudes of about 35°S. An early Cambrian (Terreneuvian) transgression inundated large areas of Baltica including Bornholm creating shallow marine and coastline environments. During this period, wave-formed shoreline sediments (the Vik Member, Hardeberga Formation) were deposited on Bornholm and are presently exposed at Strøby quarry. The sediments consist of fine- and medium-grained quartz-cemented arenites in association with a few silt-rich mudstones. The presence of well-preserved subaqueous dunes and wave ripples indicates deposition in a wave-dominated upper shoreface (littoral zone) environment, and the presence of interference ripples indicates that the littoral zone environment experienced water level fluctuations due to tides and/or changing meteorological conditions. Discoidal structures (medusoids) are present in the quarry, but due to the relative poor preservation of their fine-scale structures it is difficult to determine if the discoids represent true medusae imprints or inorganic structures. The preservation of the shallow-water bedforms as well as the possible medusae imprints is related to either the formation of thin mud layers, formed during a period of calm water when winds blew offshore for a longer period, or to the growth of bacterial mats. The orientation of the wave-formed bedforms indicates a local palaeoshoreline trending NE-SW and facing a large ocean to the north.

Formation pathways of mesoporous silica nanoparticles with dodecagonal tiling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sun, Yao; Ma, Kai; Kao, Teresa

Considerable progress in the fabrication of quasicrystals demonstrates that they can be realized in a broad range of materials. However, the development of chemistries enabling direct experimental observation of early quasicrystal growth pathways remains challenging. Here, we report the synthesis of four surfactant-directed mesoporous silica nanoparticle structures, including dodecagonal quasicrystalline nanoparticles, as a function of micelle pore expander concentration or stirring rate. We demonstrate that the early formation stages of dodecagonal quasicrystalline mesoporous silica nanoparticles can be preserved, where precise control of mesoporous silica nanoparticle size down to <30 nm facilitates comparison between mesoporous silica nanoparticles and simulated single-particle growthmore » trajectories beginning with a single tiling unit. Our results reveal details of the building block size distributions during early growth and how they promote quasicrystal formation. This work identifies simple synthetic parameters, such as stirring rate, that may be exploited to design other quasicrystal-forming self-assembly chemistries and processes.« less

Formation pathways of mesoporous silica nanoparticles with dodecagonal tiling

DOE PAGES

Sun, Yao; Ma, Kai; Kao, Teresa; ...

2017-08-15

Considerable progress in the fabrication of quasicrystals demonstrates that they can be realized in a broad range of materials. However, the development of chemistries enabling direct experimental observation of early quasicrystal growth pathways remains challenging. Here, we report the synthesis of four surfactant-directed mesoporous silica nanoparticle structures, including dodecagonal quasicrystalline nanoparticles, as a function of micelle pore expander concentration or stirring rate. We demonstrate that the early formation stages of dodecagonal quasicrystalline mesoporous silica nanoparticles can be preserved, where precise control of mesoporous silica nanoparticle size down to <30 nm facilitates comparison between mesoporous silica nanoparticles and simulated single-particle growthmore » trajectories beginning with a single tiling unit. Our results reveal details of the building block size distributions during early growth and how they promote quasicrystal formation. This work identifies simple synthetic parameters, such as stirring rate, that may be exploited to design other quasicrystal-forming self-assembly chemistries and processes.« less

Watching AGN feedback at its birth: HST observations of nascent outflow host IC860

NASA Astrophysics Data System (ADS)

Alatalo, Katherine

2016-10-01

IC860 is a nearby IR-luminous early-type spiral with a unique set of properties: it is a shocked, poststarburst galaxy that hosts an AGN-driven neutral wind and a compact core of molecular gas. IC860 can serve as a rosetta stone for the early stages of triggering AGN feedback. We propose to use WFC3 on HST to obtain NUV, optical and near-IR imaging of IC860. We will create a spatially-resolved history of star formation quenching through SED-fitting of 7 requested broadband filters, and compare the spatially resolved star formation histories to in different positions within the underlying stellar features (such as spiral structure) that might define a narrative of how star formation is quenching in IC860. These observations will also resolve the super-star cluster sites to trace the most recent star formation. Finally, these observations will trace the mass of the outflow by building an absorption map of the dust. IC860 presents a unique opportunity to study a galaxy at an early stage of transitioning from blue spiral to red early-type galaxy, that also hosts an AGN-driven neutral wind and a compact, turbulent molecular gas core.

The crucial effect of early-stage gelation on the mechanical properties of cement hydrates

NASA Astrophysics Data System (ADS)

Ioannidou, Katerina; Kanduč, Matej; Li, Lunna; Frenkel, Daan; Dobnikar, Jure; Del Gado, Emanuela

2016-07-01

Gelation and densification of calcium-silicate-hydrate take place during cement hydration. Both processes are crucial for the development of cement strength, and for the long-term evolution of concrete structures. However, the physicochemical environment evolves during cement formation, making it difficult to disentangle what factors are crucial for the mechanical properties. Here we use Monte Carlo and Molecular Dynamics simulations to study a coarse-grained model of cement formation, and investigate the equilibrium and arrested states. We can correlate the various structures with the time evolution of the interactions between the nano-hydrates during the preparation of cement. The novel emerging picture is that the changes of the physicochemical environment, which dictate the evolution of the effective interactions, specifically favour the early gel formation and its continuous densification. Our observations help us understand how cement attains its unique strength and may help in the rational design of the properties of cement and related materials.

Geology and neotectonism in the epicentral area of the 2011 M5.8 Mineral, Virginia, earthquake

USGS Publications Warehouse

Burton, William C.; Spears, David B.; Harrison, Richard W.; Evans, Nicholas H.; Schindler, J. Stephen; Counts, Ronald C.

2015-01-01

arc (Ordovician Chopawamsic Formation) to Laurentia, intrusion of a granodiorite pluton (Ordovician Ellisville pluton), and formation of a post-Chopawamsic successor basin (Ordovician Quantico Formation), all accompanied by early Paleozoic regional deformation and metamorphism. Local transpressional faulting and retrograde metamorphism occurred in the late Paleozoic, followed by diabase dike intrusion and possible local normal faulting in the early Mesozoic. The overall goal of the bedrock mapping is to determine what existing geologic structures might have been reactivated during the 2011 seismic event, and surfi cial deposits along the South Anna River are being mapped in order to determine possible neotectonic uplift. In addition to bedrock and surfi cial studies, we have excavated trenches in an area that contains two late Paleozoic faults and represents the updip projection of the causative fault for the 2011 quake. The trenches reveal faulting that has offset surfi cial deposits dated as Quaternary in age, as well as numerous other brittle structures that suggest a geologically recent history of neotectonic activity.

The crucial effect of early-stage gelation on the mechanical properties of cement hydrates

PubMed Central

Ioannidou, Katerina; Kanduč, Matej; Li, Lunna; Frenkel, Daan; Dobnikar, Jure; Del Gado, Emanuela

2016-01-01

Gelation and densification of calcium–silicate–hydrate take place during cement hydration. Both processes are crucial for the development of cement strength, and for the long-term evolution of concrete structures. However, the physicochemical environment evolves during cement formation, making it difficult to disentangle what factors are crucial for the mechanical properties. Here we use Monte Carlo and Molecular Dynamics simulations to study a coarse-grained model of cement formation, and investigate the equilibrium and arrested states. We can correlate the various structures with the time evolution of the interactions between the nano-hydrates during the preparation of cement. The novel emerging picture is that the changes of the physicochemical environment, which dictate the evolution of the effective interactions, specifically favour the early gel formation and its continuous densification. Our observations help us understand how cement attains its unique strength and may help in the rational design of the properties of cement and related materials. PMID:27417911

Early to Middle Jurassic tectonic evolution of the Bogda Mountains, Northwest China: Evidence from sedimentology and detrital zircon geochronology

NASA Astrophysics Data System (ADS)

Ji, Hongjie; Tao, Huifei; Wang, Qi; Qiu, Zhen; Ma, Dongxu; Qiu, Junli; Liao, Peng

2018-03-01

The Bogda Mountains, as an important intracontinental orogenic belt, are situated in the southern part of the Central Asian Orogenic Belt (CAOB), and are a key area for understanding the Mesozoic evolution of the CAOB. However, the tectonic evolution of the Bogda Mountains remains controversial during the Mesozoic Era, especially the Early to Middle Jurassic Periods. The successive Lower to Middle Jurassic strata are well preserved and exposed along the northern flank of the Western Bogda Mountains and record the uplift processes of the Bogda Mountains. In this study, we analysed sedimentary facies combined with detrital zircon U-Pb geochronology at five sections of Lower to Middle Jurassic strata to detect the tectonic evolution and changes of provenance in the Bogda area. During Early to Middle Jurassic times, the fluvial, deltaic and lacustrine environments dominated in the western section of the Bogda area. The existence of Early Triassic peak age indicates that the Bogda Mountains did not experience uplift during the period of early Badaowan Formation deposition. The Early Triassic to Late Permian granitoid plutons and Carboniferous volcanic rocks from the Barkol and Santanghu areas were the main provenances. The significant change in the U-Pb age spectrum implies that the Eastern Bogda Mountains initiated uplift in the period of late Badaowan Formation deposition, and the Eastern Junggar Basin and the Turpan-Hami Basin were partially partitioned. The Eastern Bogda Mountains gradually became the major provenance. From the period of early Sangonghe to early Toutunhe Formations deposition, the provenance of the sediments and basin-range frame were similar to that of late Badaowan. However, the Eastern Bogda Mountains suffered intermittent uplift three times, and successive denudation. The uplifts respectively happened in early Sangonghe, late Sangonghe to early Xishanyao, and late Xishanyao to early Toutunhe. During the deposition stage of Toutunhe Formation, a relatively strong tectonic reactivation took place along the Late Palaeozoic Bogda rift belt accompanied by relatively large-scale magmatism. The distinct basement structure between the eastern and western Bogda rift could be the structure basis of difference uplift in the Bogda area during the Mesozoic Era. The Early to Middle Jurassic episodic uplift of Eastern Bogda Mountains perhaps was related to the post-collisional convergence of the Qiangtang Block from late Badaowan to early Sangonghe, the closure of the western Mongol-Okhotsk Ocean at the Early-Middle Jurassic boundary and the tectonic accretion at the south Asian margin of Pamir Block during late Middle Jurassic times.

Printed strain sensors for early damage detection in engineering structures

NASA Astrophysics Data System (ADS)

Zymelka, Daniel; Yamashita, Takahiro; Takamatsu, Seiichi; Itoh, Toshihiro; Kobayashi, Takeshi

2018-05-01

In this paper, we demonstrate the analysis of strain measurements recorded using a screen-printed sensors array bonded to a metal plate and subjected to high strains. The analysis was intended to evaluate the capabilities of the printed strain sensors to detect abnormal strain distribution before actual defects (cracks) in the analyzed structures appear. The results demonstrate that the developed device can accurately localize the enhanced strains at the very early stage of crack formation. The promising performance and low fabrication cost confirm the potential suitability of the printed strain sensors for applications within the framework of structural health monitoring (SHM).

Early social networks predict survival in wild bottlenose dolphins.

PubMed

Stanton, Margaret A; Mann, Janet

2012-01-01

A fundamental question concerning group-living species is what factors influence the evolution of sociality. Although several studies link adult social bonds to fitness, social patterns and relationships are often formed early in life and are also likely to have fitness consequences, particularly in species with lengthy developmental periods, extensive social learning, and early social bond-formation. In a longitudinal study of bottlenose dolphins (Tursiops sp.), calf social network structure, specifically the metric eigenvector centrality, predicted juvenile survival in males. Additionally, male calves that died post-weaning had stronger ties to juvenile males than surviving male calves, suggesting that juvenile males impose fitness costs on their younger counterparts. Our study indicates that selection is acting on social traits early in life and highlights the need to examine the costs and benefits of social bonds during formative life history stages.

Lithofacies, depositional environments, regional biostratigraphy and age of the Chitarwata Formation in the Bugti Hills, Balochistan, Pakistan

NASA Astrophysics Data System (ADS)

Métais, Grégoire; Antoine, Pierre-Olivier; Baqri, S. R. Hassan; Crochet, Jean-Yves; De Franceschi, Dario; Marivaux, Laurent; Welcomme, Jean-Loup

2009-02-01

The Oligocene-early Miocene Chitarwata Formation records a critical interval of terrestrial sedimentation that predates the Siwalik deposits on the Potwar Plateau of north-central Pakistan. This Oligocene-early Miocene time interval has long been considered as lacking in the entire Indo-Pakistan region. The Chitarwata Formation is widely exposed in the Sulaiman Range, but has never been described in detail in the Sulaiman Lobe, where the famous fossiliferous strata called 'Bugti Bone Beds' have been known for over a century and half. The Chitarwata Formation represents coastal-delta at the base, and plain and fluvial environments at the top. Lithofacies and sedimentary structures of the Chitarwata Formation in the Bugti area are described in detail, and show a clearly distinct lithologic pattern, different from that reported from the Zinda Pir area. The Chitarwata Formation also records an important transition in the evolution of the drainage systems in the area during the late Paleogene and early Neogene. This transition from the west-flowing paleo-Indus fluvial system to the development of the ancestral Indus drainage system may explain the numerous hiatuses that characterize the Chitarwata Formation. The abundance of fossil mammals from the Chitarwata and overlying Vihowa formation in the Bugti Hills provides critical biochronologic information that sheds new light on biostratigraphic correlation with the Zinda Pir area and for the entire Sulaiman Range.

Geophysical expression of elements of the Rio Grande rift in the northeast Tusas Mountains - Preliminary interpretations

USGS Publications Warehouse

Drenth, Benjamin J.; Turner, Kenzie J.; Thompson, Ren A.; Grauch, V. J.; Cosca, Michael A.; Lee, John

2011-01-01

New interpretations of the nature of the Rio Grande rift and pre-existing rocks in the northeast Tusas Mountains region are derived from new and existing gravity and aeromagnetic data. 12-15 mGal amplitude gravity lows are interpreted to mainly reflect large thicknesses of the upper Oligocene to upper Miocene, syn-rift Los Pinos Formation and possibly significant amounts of the Eocene El Rito Formation. The Broke Off Mountain sub basin, named after the location of its greatest inferred depth, is interpreted to be a ~40 km long and ~13 km wide structure elongated in a northwest trend at the western margin of the San Luis Basin. The sub basin is interpreted to contain a maximum combined thickness of 900-2300 m of the Los Pinos Formation and El Rito Formation, with the Los Pinos Formation constituting the majority of the section. Sub basin age is constrained to be older than 21.6 ± 1.4 Ma, the age of a Hinsdale Formation basalt flow that caps the Los Pinos Formation section at Broke Off Mountain. This age constraint and surface geology indicate a pre- and early-rift age. The structural fabric of the northeast Tusas Mountains region is dominated by northwest-trending normal faults, as indicated by geologic mapping and interpretation of aeromagnetic data. Preliminary analysis of the aeromagnetic data suggests that lineaments, possibly reflecting faulting, trend through volcanic rocks as young as Pliocene in age. If correct, these interpretations challenge commonly held beliefs regarding two stages in the structural style of rifting, where early (Oligocene-Miocene) rifting was characterized by broad, shallow basins bounded by northwest-trending faults and later (Miocene-Pliocene) rifting was characterized by deep, narrow basins bounded by north-trending faults. The Broke Off Mountain sub basin is a counter example of a pre- and early-rift, deep and narrow basin. We hypothesize that the Broke Off Mountain sub basin may represent a southward extension of the Monte Vista graben in Colorado, based on similarities in geophysical expression, stratigraphy, and its position at the western portion of the San Luis Basin

Structural elements of the Sulu Sea, Philippines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hinz, K.; Block, M.; Kudrass, H.R.

1994-07-01

The structure and tectonic history of the Sulu Sea are described on the basis of seismic reflection data combined with the findings of onshore and offshore geological studies, and the results of ODP Leg 124 drilling. Closing of a hypothetical Mesozoic proto-South China Sea associated with the formation of oceanic crustal splinters in the late Eocene followed by southward subduction and, in turn, progressive collision of the north Palawan continental terrane with the micro-continental Borneo plate since the middle Miocene, resulted in the formation of the structurally complex Sulu-Borneo collision belt. The latter comprises north Sabah, southern and central Palawan,more » and the northwest Sulu basin. Fracturing of the Borneo micro-continental plate into the Sulu and Cagayan ridges initiated the opening of the southeast Sulu basin during the late Oligocene through the early Miocene. Collision of the north Palawan continental terrane with Cagayan Ridge in the late early Miocene and oblique collision of these blocks with the central Philippines resulted in the still ongoing closing of the southeast Sulu basin since the middle or late Miocene. Closing of the southeast Sulu basin began with the formation of an oceanic crustal slab.« less

Inoculation density and nutrient level determine the formation of mushroom-shaped structures in Pseudomonas aeruginosa biofilms

NASA Astrophysics Data System (ADS)

Ghanbari, Azadeh; Dehghany, Jaber; Schwebs, Timo; Müsken, Mathias; Häussler, Susanne; Meyer-Hermann, Michael

2016-09-01

Pseudomonas aeruginosa often colonises immunocompromised patients and the lungs of cystic fibrosis patients. It exhibits resistance to many antibiotics by forming biofilms, which makes it hard to eliminate. P. aeruginosa biofilms form mushroom-shaped structures under certain circumstances. Bacterial motility and the environment affect the eventual mushroom morphology. This study provides an agent-based model for the bacterial dynamics and interactions influencing bacterial biofilm shape. Cell motility in the model relies on recently published experimental data. Our simulations show colony formation by immotile cells. Motile cells escape from a single colony by nutrient chemotaxis and hence no mushroom shape develops. A high number density of non-motile colonies leads to migration of motile cells onto the top of the colonies and formation of mushroom-shaped structures. This model proposes that the formation of mushroom-shaped structures can be predicted by parameters at the time of bacteria inoculation. Depending on nutrient levels and the initial number density of stalks, mushroom-shaped structures only form in a restricted regime. This opens the possibility of early manipulation of spatial pattern formation in bacterial colonies, using environmental factors.

Inoculation density and nutrient level determine the formation of mushroom-shaped structures in Pseudomonas aeruginosa biofilms.

PubMed

Ghanbari, Azadeh; Dehghany, Jaber; Schwebs, Timo; Müsken, Mathias; Häussler, Susanne; Meyer-Hermann, Michael

2016-09-09

Pseudomonas aeruginosa often colonises immunocompromised patients and the lungs of cystic fibrosis patients. It exhibits resistance to many antibiotics by forming biofilms, which makes it hard to eliminate. P. aeruginosa biofilms form mushroom-shaped structures under certain circumstances. Bacterial motility and the environment affect the eventual mushroom morphology. This study provides an agent-based model for the bacterial dynamics and interactions influencing bacterial biofilm shape. Cell motility in the model relies on recently published experimental data. Our simulations show colony formation by immotile cells. Motile cells escape from a single colony by nutrient chemotaxis and hence no mushroom shape develops. A high number density of non-motile colonies leads to migration of motile cells onto the top of the colonies and formation of mushroom-shaped structures. This model proposes that the formation of mushroom-shaped structures can be predicted by parameters at the time of bacteria inoculation. Depending on nutrient levels and the initial number density of stalks, mushroom-shaped structures only form in a restricted regime. This opens the possibility of early manipulation of spatial pattern formation in bacterial colonies, using environmental factors.

Edge enhanced growth induced shape transition in the formation of GaN nanowall network

NASA Astrophysics Data System (ADS)

Nayak, Sanjay; Kumar, Rajendra; Shivaprasad, S. M.

2018-01-01

We address the mechanism of early stages of growth and shape transition of the unique nanowall network (NwN) of GaN by experimentally monitoring its morphological evolution and complementing it by first-principles calculations. Using atomic force and scanning electron microscopy, we observe the formation of oval shaped islands at very early stages of the growth which later transformed into tetrahedron shaped (3 faced pyramid) islands. These tetrahedron shaped islands further grow anisotropically along their edges of the (20 2 ¯ 1) facets to form the wall-like structure as the growth proceeds. The mechanism of this crystal growth is discussed in light of surface free energies of the different surfaces, adsorption energy, and diffusion barrier of Ga ad-atoms on the (20 2 ¯ 1) facets. By first-principles calculations, we find that the diffusion barrier of ad-atoms reduces with decreasing width of facets and is responsible for the anisotropic growth leading to the formation of NwN. This study suggests that formation of NwN is an archetype example of structure dependent attachment kinetic instability induced shape transition in thin film growth.

XBtg2 is required for notochord differentiation during early Xenopus development.

PubMed

Sugimoto, Kaoru; Hayata, Tadayoshi; Asashima, Makoto

2005-09-01

The notochord is essential for normal vertebrate development, serving as both a structural support for the embryo and a signaling source for the patterning of adjacent tissues. Previous studies on the notochord have mostly focused on its formation and function in early organogenesis but gene regulation in the differentiation of notochord cells itself remains poorly defined. In the course of screening for genes expressed in developing notochord, we have isolated Xenopus homolog of Btg2 (XBtg2). The mammalian Btg2 genes, Btg2/PC3/TIS21, have been reported to have multiple functions in the regulation of cell proliferation and differentiation but their roles in early development are still unclear. Here we characterized XBtg2 in early Xenopus laevis embryogenesis with focus on notochord development. Translational inhibition of XBtg2 resulted in a shortened and bent axis phenotype and the abnormal structures in the notochord tissue, which did not undergo vacuolation. The XBtg2-depleted notochord cells expressed early notochord markers such as chordin and Xnot at the early tailbud stage, but failed to express differentiation markers of notochord such as Tor70 and 5-D-4 antigens in the later stages. These results suggest that XBtg2 is required for the differentiation of notochord cells such as the process of vacuolar formation after determination of notochord cell fate.

Working Memory, Long-Term Memory, and Medial Temporal Lobe Function

ERIC Educational Resources Information Center

Jeneson, Annette; Squire, Larry R.

2012-01-01

Early studies of memory-impaired patients with medial temporal lobe (MTL) damage led to the view that the hippocampus and related MTL structures are involved in the formation of long-term memory and that immediate memory and working memory are independent of these structures. This traditional idea has recently been revisited. Impaired performance…

Early stage structural development of prototypical zeolitic imidazolate framework (ZIF) in solution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terban, Maxwell W.; Banerjee, Debasis; Ghose, Sanjit

Given the wide-ranging potential applications of metal organic frameworks (MOFs), an emerging imperative is to understand their formation with atomic scale precision. This will aid in designing syntheses for next-generation MOFs with enhanced properties and functionalities. Major challenges are to characterize the early-stage seeds, and the pathways to framework growth, which require synthesis coupled with in situ structural characterization sensitive to nanoscale structures in solution. Here we report measurements of an in situ synthesis of a prototypical MOF, ZIF-8, utilizing synchrotron X-ray atomic pair distribution function (PDF) analysis optimized for sensitivity to dilute species, complemented by mass spectrometry, electron microscopy,more » and density functional theory calculations. We observe that despite rapid formation of the crystalline product, a high concentration of Zn(2-MeIm) 4(2-MeIm=2-methylimidazolate) initially forms and persists as stable clusters over long times. A secondary, amorphous phase also pervades during the synthesis, which has a structural similarity to the final ZIF-8 and may act as an intermediate to the final product.« less

Early stage structural development of prototypical zeolitic imidazolate framework (ZIF) in solution

DOE PAGES

Terban, Maxwell W.; Banerjee, Debasis; Ghose, Sanjit; ...

2018-02-05

Given the wide-ranging potential applications of metal organic frameworks (MOFs), an emerging imperative is to understand their formation with atomic scale precision. This will aid in designing syntheses for next-generation MOFs with enhanced properties and functionalities. Major challenges are to characterize the early-stage seeds, and the pathways to framework growth, which require synthesis coupled with in situ structural characterization sensitive to nanoscale structures in solution. Here we report measurements of an in situ synthesis of a prototypical MOF, ZIF-8, utilizing synchrotron X-ray atomic pair distribution function (PDF) analysis optimized for sensitivity to dilute species, complemented by mass spectrometry, electron microscopy,more » and density functional theory calculations. We observe that despite rapid formation of the crystalline product, a high concentration of Zn(2-MeIm) 4(2-MeIm=2-methylimidazolate) initially forms and persists as stable clusters over long times. A secondary, amorphous phase also pervades during the synthesis, which has a structural similarity to the final ZIF-8 and may act as an intermediate to the final product.« less

Bacterial community dynamics during the early stages of biofilm formation in a chlorinated experimental drinking water distribution system: implications for drinking water discolouration.

PubMed

Douterelo, I; Sharpe, R; Boxall, J

2014-07-01

To characterize bacterial communities during the early stages of biofilm formation and their role in water discolouration in a fully representative, chlorinated, experimental drinking water distribution systems (DWDS). Biofilm development was monitored in an experimental DWDS over 28 days; subsequently the system was disturbed by raising hydraulic conditions to simulate pipe burst, cleaning or other system conditions. Biofilm cell cover was monitored by fluorescent microscopy and a fingerprinting technique used to assess changes in bacterial community. Selected samples were analysed by cloning and sequencing of the 16S rRNA gene. Fingerprinting analysis revealed significant changes in the bacterial community structure over time (P < 0·05). Cell coverage increased over time accompanied by an increase in bacterial richness and diversity. Shifts in the bacterial community structure were observed along with an increase in cell coverage, bacterial richness and diversity. Species related to Pseudomonas spp. and Janthinobacterium spp. dominated the process of initial attachment. Based on fingerprinting results, the hydraulic regimes did not affect the bacteriological composition of biofilms, but they did influence their mechanical stability. This study gives a better insight into the early stages of biofilm formation in DWDS and will contribute to the improvement of management strategies to control the formation of biofilms and the risk of discolouration. © 2014 The Authors. published by John Wiley & Sons Ltd on behalf of Society for Applied Microbiology.

Bacterial community dynamics during the early stages of biofilm formation in a chlorinated experimental drinking water distribution system: implications for drinking water discolouration

PubMed Central

Douterelo, I; Sharpe, R; Boxall, J

2014-01-01

Aims To characterize bacterial communities during the early stages of biofilm formation and their role in water discolouration in a fully representative, chlorinated, experimental drinking water distribution systems (DWDS). Methods and Results Biofilm development was monitored in an experimental DWDS over 28 days; subsequently the system was disturbed by raising hydraulic conditions to simulate pipe burst, cleaning or other system conditions. Biofilm cell cover was monitored by fluorescent microscopy and a fingerprinting technique used to assess changes in bacterial community. Selected samples were analysed by cloning and sequencing of the 16S rRNA gene. Fingerprinting analysis revealed significant changes in the bacterial community structure over time (P < 0·05). Cell coverage increased over time accompanied by an increase in bacterial richness and diversity. Conclusions Shifts in the bacterial community structure were observed along with an increase in cell coverage, bacterial richness and diversity. Species related to Pseudomonas spp. and Janthinobacterium spp. dominated the process of initial attachment. Based on fingerprinting results, the hydraulic regimes did not affect the bacteriological composition of biofilms, but they did influence their mechanical stability. Significance and Importance of the Study This study gives a better insight into the early stages of biofilm formation in DWDS and will contribute to the improvement of management strategies to control the formation of biofilms and the risk of discolouration. PMID:24712449

Ultrafast microfluidic mixer for tracking the early folding kinetics of human telomere G-quadruplex.

PubMed

Li, Ying; Liu, Chao; Feng, Xiaojun; Xu, Youzhi; Liu, Bi-Feng

2014-05-06

The folding of G-quadruplex is hypothesized to undergo a complex process, from the formation of a hairpin structure to a triplex intermediate and to the final G-quadruplex. Currently, no experimental evidence has been found for the hairpin formation, because it folds in the time regime of 10-100 μs, entailing the development of microfluidic mixers with a mixing time of less than 10 μs. In this paper, we reported an ultrarapid micromixer with a mixing time of 5.5 μs, which represents the fastest turbulent micromixer to our best knowledge. Evaluations of the micromixer were conducted to confirm its mixing efficiency for small molecules and macromolecules. This new micromixer enabled us to interrogate the hairpin formation in the early folding process of human telomere G-quadruplex. The experimental kinetic evidence for the formation of hairpin was obtained for the first time.

Superfluid Boson-Fermion Mixture: Structure Formation and Collective Periodic Motion

NASA Astrophysics Data System (ADS)

Mitra, A.

2018-01-01

Multiple periodic domain formation due to a modulation instability in a boson-fermion mixture superfluid in the unitary regime has been studied. The periodicity of the structure evolves with time. At the early stage of evolution, bosonic domains show the periodic nature, whereas the periodicity in the fermionic (Cooper pair) domains appears at the late stage of evolution. The nature of interatomic interspecies interactions affects the domain formation. In a harmonic trap, the mixture executes an undamped oscillation. The frequency of the oscillation depends on the relative coupling strength between boson-fermion and fermion-fermion. The repulsive boson-fermion interaction reduces the oscillation frequency, whereas the attractive interaction enhances the frequency significantly.

Early Archean stromatolites: Paleoenvironmental setting and controls on formation

NASA Technical Reports Server (NTRS)

Lowe, D. R.

1991-01-01

The earliest record of terrestrial life is contained in thin, silicified sedimentary layers within enormously thick, predominantly volcanic sequences in South Africa and Western Australia. This record includes bacteria-like microfossils, laminated carbonaceous structures resembling flat bacterial mats and stromatolites, and a morphologically diverse assemblage of carbonaceous particles. These structures and particles and their host sediments provide the only direct source of information on the morphology, paleoecology, and biogeochemistry of early life; the nature of interactions between organisms and surface systems on the early earth; and possible settings within which life might have evolved. The three known occurrences of 3.5 to 3.2 billion-year-old stromalites were evaluated in terms of depositional setting and biogenicity.

Bedrock Geology and Asbestos Deposits of the Upper Missisquoi Valley and Vicinity, Vermont

USGS Publications Warehouse

Cady, Wallace Martin; Albee, Arden Leroy; Chidester, A.H.

1963-01-01

The upper Missisquoi Valley and vicinity as described in this report covers an area of about 250 square miles at the headwaters of the Missisquoi River in north-central Vermont. About 90 percent of the area is forested and the remainder is chiefly farm land. The topography reflects the geologic structure and varied resistance of the bedrock to erosion. Most of the area is on the east limb of the Green Mountain anticlinorium, which is the principal structural feature of Vermont. The bedrock is predominantly sedimentary and volcanic rock that has been regionally metamorphosed. It was intruded before metamorphism by mafic and ultramafic igneous rocks, and after metamorphism by felsic and mafic igneous rocks. The metamorphosed sedimentary and volcanic rocks range in age from Cambrian(?) to Middle Silurian, the intrusive igneous rocks from probably Late Ordovician to probably late Permian. Metamorphism and principal folding in the region occurred in Middle Devonian time. The metamorphosed sedimentary and volcanic rocks make up a section at least 25,000 feet thick and can be divided into nine formations. The Hazens Notch formation of Cambrian(?) and Early Cambrian age is characterized by carbonaceous schist. It is succeeded in western parts of the area by the Jay Peak formation of Early Cambrian age, which is chiefly a schist that is distinguished by the general absence of carbonaceous zones; in central parts of the area the Hazens Notch formation is followed by the Belvidere Mountain amphibolite, probably the youngest of the formations of Early Cambrian age. The Ottauquechee formation, composed of carbonaceous phyllite and quartzite, and phyllitic graywacke, is of Middle Cambrian age. The Stowe formation of Late Cambrian(?) and Early(?) Ordovician age overlies the Ottauquechee and is predominantly noncarbonaceous schist, though it also contains greenstone and carbonaceous schist and phyllite. The Umbrella Hill formation of Middle Ordovician age is characteristically a conglomerate in which the mineral chloritoid is common. The overlying Moretown formation, also of Middle Ordovician age, contains granulite and slate, also greenstone and amphibolite of the Coburn Hill volcanic member. The Shaw Mountain formation, made up of conglomerate, phyllite, and limestone, is the oldest Silurian unit. The Shaw Mountain formation is succeeded by the Northfield slate of Middle Silurian age. The igneous rocks of the region include various ultramafic plutonic rocks, such as dunite, peridotite, and serpentinite, probably of Late Ordovician age; sills and nearly concordant dikes of metagabbro of Late Ordovician age; biotite granite plutons or Middle or Late Devonian age, most notably on Eltey Mountain; and hypabyssallamprophyre, probably of late Permian age. Metamorphic zoning is shown by the distribution of rocks of the epidote-amphibolite facies and the greenschist facies in and near the Green Mountains, and near Coburn Hill and Eltey Mountain. Metasomatism related to regional metamorphism has produced porphyroblasts and quartz segregations in the sedimentary and volcanic rocks, and steatitization and carbonatization of serpentinite. Contact metamorphism has formed rocks of the epidote-amphibolite facies near granite plutons, and probably calc-silicate rock at the contacts of ultramafic plutons. The axial anticline of the Green Mountain anticlinorium and other anticlines and synclines to the east are the major longitudinal structural features of the area. These structures are complicated by transverse folds, particularly a syncline in the vicinity of Tillotson Peak. Early minor cross folds that are best developed in the Hazens Notch formation are believed to be genetically related to the transverse folds. The axial planes of the cross folds are folded about the axes of the later longitudinal folds of the Green Mountain anticlinorium. The longitudinal and transverse fold systems probably formed in the same episode of defor

Structure formation in pH-sensitive hydrogels composed of sodium caseinate and N,O-carboxymethyl chitosan.

PubMed

Wei, Yanxia; Xie, Rui; Lin, Yanbin; Xu, Yunfei; Wang, Fengxia; Liang, Wanfu; Zhang, Ji

2016-08-01

The pH-sensitive hydrogels composed of sodium caseinate (SC) and N,O-carboxymethyl chitosan (NOCC) were prepared and a new method to characterize the gelation process was presented in this work. Reological tests suggested that RSC/NOCC=3/7 (the weight ratio of SC and NOCC) was the best ratio of hydrogel. The well-developed three-dimensional network structures in the hydrogel were confirmed by AFM. Two structural parameters, tIS and tCS, denoted as the initial and critical structure formation time, respectively, were used to provide an exact determination of the start of structure formation and description of gelation process. The gelation process strongly depended on temperature changes, a high temperature resulted in an early start of gelation. The non-kinetic model suggested the higher activation energy in the higher temperatures was disadvantageous to structure formation, and vice versa. Due to the smart gel reported here was very stable at room temperature, we believed that the gel is required for applications in drug delivery or could be exploited in the development of potential application as molecular switches in the future. Copyright © 2016 Elsevier B.V. All rights reserved.

A model for the evolution of the Earth's mantle structure since the Early Paleozoic

NASA Astrophysics Data System (ADS)

Zhang, Nan; Zhong, Shijie; Leng, Wei; Li, Zheng-Xiang

2010-06-01

Seismic tomography studies indicate that the Earth's mantle structure is characterized by African and Pacific seismically slow velocity anomalies (i.e., superplumes) and circum-Pacific seismically fast anomalies (i.e., a globally spherical harmonic degree 2 structure). However, the cause for and time evolution of the African and Pacific superplumes and the degree 2 mantle structure remain poorly understood with two competing proposals. First, the African and Pacific superplumes have remained largely unchanged for at least the last 300 Myr and possibly much longer. Second, the African superplume is formed sometime after the formation of Pangea (i.e., at 330 Ma) and the mantle in the African hemisphere is predominated by cold downwelling structures before and during the assembly of Pangea, while the Pacific superplume has been stable for the Pangea supercontinent cycle (i.e., globally a degree 1 structure before the Pangea formation). Here, we construct a proxy model of plate motions for the African hemisphere for the last 450 Myr since the Early Paleozoic using the paleogeographic reconstruction of continents constrained by paleomagnetic and geological observations. Coupled with assumed oceanic plate motions for the Pacific hemisphere, this proxy model for the plate motion history is used as time-dependent surface boundary condition in three-dimensional spherical models of thermochemical mantle convection to study the evolution of mantle structure, particularly the African mantle structure, since the Early Paleozoic. Our model calculations reproduce well the present-day mantle structure including the African and Pacific superplumes and generally support the second proposal with a dynamic cause for the superplume structure. Our results suggest that while the mantle in the African hemisphere before the assembly of Pangea is predominated by the cold downwelling structure resulting from plate convergence between Gondwana and Laurussia, it is unlikely that the bulk of the African superplume structure can be formed before ˜230 Ma (i.e., ˜100 Myr after the assembly of Pangea). Particularly, the last 120 Myr plate motion plays an important role in generating the African superplume. Our models have implications for understanding the global-scale magmatism, tectonics, mantle dynamics, and thermal evolution history for the Earth since the Early Paleozoic.

Soft-sediment deformation structures in the late Miocene Şelmo Formation around Adıyaman area, Southeastern Turkey

NASA Astrophysics Data System (ADS)

Koç Taşgın, Calibe; Orhan, Hükmü; Türkmen, İbrahim; Aksoy, Ercan

2011-04-01

The Şelmo Formation was deposited in the basins associated with the Southeastern Anatolian Thrust Belt and East Anatolian Fault Zone in SE Turkey. These structures developed as a result of compressional stresses created by the movement of the Arabian plate to the north and the Eurasian plate to the west from early Miocene to late Pliocene. The outcrops of the Şelmo Formation in the Adýyaman area (SE Turkey) comprise braided river deposits (lower alluvial unit) at the base, lacustrine and deltaic deposits in the middle (lacustrine unit) and low sinuousity river and alluvial deposits at the top (upper alluvial unit). Soft-sediment deformation structures were developed in sandstone, siltstone and marl of the deltaic and lacustrine unit of the Şelmo Formation. These are slumps, recumbent folds, load casts, ball-and-pillow structures, flame structures, neptunian dykes, chaotically associated structures and synsedimentary faults. The tectonic setting of the basin, the lateral extent of the soft-sediment deformation structures over tens of kilometers, their similarities to deformation structures interpreted as being induced seismically in other regions worldwide or in a laboratory setting, and being confined by undeformed layers suggest that the main trigger system was related to seismic activity in the area.

A Cosmologist's Tour Through the New Particle Zoo / Candy Shop

NASA Astrophysics Data System (ADS)

Turner, M. S.

Recent developments in elementary particle physics have led to a renaissance in cosmology, in general, and in the study of structure formation, in particular. Already, the study of the very early (t ≤ 10-2s) history of the Universe has provided valuable hints as to the 'initial data' for the structure formation problem - the nature and origin of the primeval density inhomogeneities, the quantity and composition of matter in the Universe today, and numerous candidates for the constituents of the ubiquitous dark matter. The author reviews the multitude of WIMP candidates for the dark matter provided by modern particle physics theories, putting them into context by briefly discussing the theories which predict them. He reviews their various birth sites and birth processes in the early Universe. The author also mentions some very exotic possibilities - unstable WIMPs, cosmic strings, and even the possibility of a relic cosmological term.

Atomic-scale models of early-stage alkali depletion and SiO2-rich gel formation in bioactive glasses.

PubMed

Tilocca, Antonio

2015-01-28

Molecular dynamics simulations of Na(+)/H(+)-exchanged 45S5 Bioglass® models reveal that a large fraction of the hydroxyl groups introduced into the proton-exchanged, hydrated glass structure do not initially form covalent bonds with Si and P network formers but remain free and stabilised by the modifier metal cations, whereas substantial Si-OH and P-OH bonding is observed only at higher Na(+)/H(+) exchange levels. The strong affinity between free OH groups and modifier cations in the highly fragmented 45S5 glass structure appears to represent the main driving force for this effect. This suggests an alternative direct route for the formation of a repolymerised silica-rich gel in the early stages of the bioactive mechanism, not considered before, which does not require sequential repeated breakings of Si-O-Si bonds and silanol condensations.

Carbohydrate-mediated responses during zygotic and early somatic embryogenesis in the endangered conifer, Araucaria angustifolia

PubMed Central

Elbl, Paula; De Souza, Amanda P.; Jardim, Vinicius; de Oliveira, Leandro F.; Macedo, Amanda F.; dos Santos, André L. W.; Buckeridge, Marcos S.; Floh, Eny I. S.

2017-01-01

Three zygotic developmental stages and two somatic Araucaria angustifolia cell lines with contrasting embryogenic potential were analyzed to identify the carbohydrate-mediated responses associated with embryo formation. Using a comparison between zygotic and somatic embryogenesis systems, the non-structural carbohydrate content, cell wall sugar composition and expression of genes involved in sugar sensing were analyzed, and a network analysis was used to identify coordinated features during embryogenesis. We observed that carbohydrate-mediated responses occur mainly during the early stages of zygotic embryo formation, and that during seed development there are coordinated changes that affect the development of the different structures (embryo and megagametophyte). Furthermore, sucrose and starch accumulation were associated with the responsiveness of the cell lines. This study sheds light on how carbohydrate metabolism is influenced during zygotic and somatic embryogenesis in the endangered conifer species, A. angustifolia. PMID:28678868

Biostratigraphy and structural setting of the Permian Coyote Butte Formation of central Oregon.

USGS Publications Warehouse

Wardlaw, B.R.; Nestell, M.K.; Dutro, J.T.

1982-01-01

Larger isolated outcrops of the limestones of the Coyote Butte Formation consistently contain younger over older faunas that range through most of the Leonardian Series of the Early Permian. The outcrops of the Coyote Butte Formation are interpreted as right- side up blocks probably introduced into the area as one massive exotic unit. The Coyote Butte Formation is very similar to the Lower Permain limestone near Quinn River Crossing, Nevada, and both are suggested to have a similar origin. The Coyote Butte Formation was probably introduced during a late-stage event to deforming Mesozoic oceanic sediments in Mesozoic time. -Authors

Neoproterozoic complexes of the shelf cover of the Dzabkhan terrane basement in the Central Asian Orogenic Belt

NASA Astrophysics Data System (ADS)

Kozakov, I. K.; Kuznetsov, A. B.; Erdenegargal, Ch.; Salnikova, E. B.; Anisimova, I. V.; Plotkina, Ju. V.; Fedoseenko, A. M.

2017-09-01

The formation stages of high-grade metamorphic complexes and the related granitoids of the Dzabkhan terrane basement are considered. The age data (U-Pb method, TIMS) of zircons from the trondhjemite block of the eastern part of the Dzabkhan terrane, which is directly overlain by the dolomite sequence of the Tsagaan Oloom Formation, are given. Trondhjemites yield the U-Pb zircon age of 862 ± 3 Ma. In their structural position, they are assigned to typical postmetamorphic formations that determine the formation and cratonization of rocks of the host block. The geochronological study of trondhjemites gives grounds to distinguish fragments of the continental crust in the Dzabkhan terrane basement, the formation of which occurred at different periods of time: ˜860 and ˜790 Ma. Geological-geochronological and Sm‒Nd isotope-geochemical studies indicate that the Dzabkhan terrane basement is not a single block of the Early Precambrian continental crust, but a composite terrane, comprising Neoproterozoic ensialic and island-arc structural and compositional complexes. Correlation of Sr isotopic characteristics with the 87Sr/86Sr variation curve in the Neoproterozoic and Cambrian seawater shows that carbonate deposits accumulated at the eastern margin of the Dzabkhan terrane near the end of the Neoproterozoic, 700-550 Ma, and in the central part of the terrane in the Early Cambrian, 540-530 Ma.

Structural formation of huntingtin-like aggregates probed by small-angle neutron scattering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stanley, Christopher B; Perevozchikova, Tatiana; Berthelier-Jung, Valerie M

2011-01-01

In several neurodegenerative disorders, including Huntington s disease (HD), aspects concerning the earliest of protein structures that form along the aggregation pathway have increasingly gained attention since these particular species are likely to be neurotoxic. We used time-resolved small-angle neutron scattering (SANS) to probe in solution these transient structures formed by peptides having the N-terminal sequence context of mutant huntingtin (Htt) exon 1. We obtained snapshots of the formed aggregates as the kinetic reaction ensued to yield quantitative information on their size and mass. At the early stage, small precursor species with an initial radius of gyration (Rg) of 16.1more » 5.9 and average mass of a dimer to trimer were monitored. Structural growth was treated as two modes with a transition from three-dimensional early aggregate formation to two-dimensional fibril growth and association. Our SANS results on the internal structure of the mature fibrils demonstrate loose packing with about 1 peptide per 4.75 -sheet repeat distance, which is shown to be quantitatively consistent with a -helix model. This research provides new insights into the structures forming along the pathway of Htt exon 1 aggregation and should assist in determining the role that precursors play in neuronal toxicity.« less

Paleomagnetism and tectonics of the Crescent Formation, northern Olympic Mountains, Washington

NASA Technical Reports Server (NTRS)

Warnock, Andrew C.; Burmester, Russell F.; Engebretson, David C.

1993-01-01

Results are presented of a paleomagnetic analysis of the Crescent Formation basalts of the northern Olympic Mountains, carried out with the purpose of constraining the emplacement and deformation history of the rocks of the northern Coast Range. It was found that (1) the stable remanent magnetization measured within the Crescent Formation appears to be early, predating significant deformation, and probably is primary; (2) a correction for bedding rotations about strike within four different structural domains produces a circular distribution of virtual geomagnetic poles; and (3) the Crescent Formation, where sampled in the north, records no significant net rotation or displacement.

Preliminary geologic map of the Black Mountain area northeast of Victorville, San Bernardino County, California

USGS Publications Warehouse

Stone, Paul

2006-01-01

The Black Mountain area is in the Mojave Desert about 20 km northeast of Victorville, California. The geology of this area is of interest primarily for its excellent exposures of the early Mesozoic Fairview Valley Formation, a sequence of weakly metamorphosed sedimentary rocks including a thick, commercially important unit of limestone conglomerate that has been mined for cement at Black Mountain Quarry for several decades. Recent geochronologic work has shown that the Fairview Valley Formation is probably of Early Jurassic age. This preliminary geologic map of the Black Mountain area depicts the stratigraphic and structural relations of the Fairview Valley Formation and the associated rocks, most notably the overlying Sidewinder Volcanics of Early(?), Middle, and Late(?) Jurassic age. The map is based on new field studies by the author designed to clarify details of the stratigraphy and structure unresolved by previous investigations. The map is considered preliminary because the ages of some geologic units critical for a satisfactory understanding of the stratigraphic and structural framework remain unknown. The map area also includes a segment of the Helendale Fault, one of several faults of known or inferred late Cenozoic right-lateral displacement that make up the Eastern California Shear Zone. The fault is marked by aligned northeast-facing scarps in Pleistocene or older alluvial deposits and the underlying bedrock units. Relations in the map area suggest that right-lateral displacement on the Helendale Fault probably does not exceed 2 km, a conclusion compatible with previous estimates of displacement on this fault based on relations both within and outside the Black Mountain area.

A cosmological solution to the Impossibly Early Galaxy Problem

NASA Astrophysics Data System (ADS)

Yennapureddy, Manoj K.; Melia, Fulvio

2018-06-01

To understand the formation and evolution of galaxies at redshifts 0 ≲ z ≲ 10, one must invariably introduce specific models (e.g., for the star formation) in order to fully interpret the data. Unfortunately, this tends to render the analysis compliant to the theory and its assumptions, so consensus is still somewhat elusive. Nonetheless, the surprisingly early appearance of massive galaxies challenges the standard model, and the halo mass function estimated from galaxy surveys at z ≳ 4 appears to be inconsistent with the predictions of ΛCDM, giving rise to what has been termed "The Impossibly Early Galaxy Problem" by some workers in the field. A simple resolution to this question may not be forthcoming. The situation with the halos themselves, however, is more straightforward and, in this paper, we use linear perturbation theory to derive the halo mass function over the redshift range 0 ≲ z ≲ 10 for the Rh = ct universe. We use this predicted halo distribution to demonstrate that both its dependence on mass and its very weak dependence on redshift are compatible with the data. The difficulties with ΛCDM may eventually be overcome with refinements to the underlying theory of star formation and galaxy evolution within the halos. For now, however, we demonstrate that the unexpected early formation of structure may also simply be due to an incorrect choice of the cosmology, rather than to yet unknown astrophysical issues associated with the condensation of mass fluctuations and subsequent galaxy formation.

Meiotic nucleolar cycle and chromatoid body formation during the rat (Rattus novergicus) and mouse (Mus musculus) spermiogenesis.

PubMed

Peruquetti, Rita Luiza; Assis, Isabella Mariana; Taboga, Sebastião Roberto; de Azeredo-Oliveira, Maria Tercília Vilela

2008-06-01

The aims of the present study were to follow the nucleolar cycle in spermiogenesis of the laboratory rodents Rattus novergicus and Mus musculus, to verify the relationship between the nucleolar component and chromatoid body (CB) formation and to investigate the function of this cytoplasmic supramolecular structure in spermatogenic haploid cells. Histological sections of adult seminiferous tubules were analyzed cytochemically by light microscopy and ultrastructural procedures by transmission electron microscopy. The results reveal that in early spermatids, the CB was visualized in association with the Golgi cisterns indicating that this structure may participate in the acrosome formation process. In late spermatids, the CB was observed near the axonema, a fact suggesting that this structure may support the formation of the spermatozoon tail. In conclusion, our data showed that there is disintegration of spermatid nucleoli at the beginning of spermatogenesis and a fraction of this nucleolar material migrates to the cytoplasm, where a specific structure is formed, known as the "chromatoid body", which, apparently, participates in some parts of the rodent spermiogenesis process.

Pattern formation of frictional fingers in a gravitational potential

NASA Astrophysics Data System (ADS)

Eriksen, Jon Alm; Toussaint, Renaud; Mâløy, Knut Jørgen; Flekkøy, Eirik; Galland, Olivier; Sandnes, Bjørnar

2018-01-01

Aligned finger structures, with a characteristic width, emerge during the slow drainage of a liquid-granular mixture in a tilted Hele-Shaw cell. A transition from vertical to horizontal alignment of the finger structures is observed as the tilting angle and the granular density are varied. An analytical model is presented, demonstrating that the alignment properties are the result of the competition between fluctuating granular stresses and the hydrostatic pressure. The dynamics is reproduced in simulations. We also show how the system explains patterns observed in nature, created during the early stages of a dike formation.

The Lyα forest and the Cosmic Web

NASA Astrophysics Data System (ADS)

Meiksin, Avery

2016-10-01

The accurate description of the properties of the Lyman-α forest is a spectacular success of the Cold Dark Matter theory of cosmological structure formation. After a brief review of early models, it is shown how numerical simulations have demonstrated the Lyman-α forest emerges from the cosmic web in the quasi-linear regime of overdensity. The quasi-linear nature of the structures allows accurate modeling, providing constraints on cosmological models over a unique range of scales and enabling the Lyman-α forest to serve as a bridge to the more complex problem of galaxy formation.

Galaxy formation

PubMed Central

Peebles, P. J. E.

1998-01-01

It is argued that within the standard Big Bang cosmological model the bulk of the mass of the luminous parts of the large galaxies likely had been assembled by redshift z ∼ 10. Galaxy assembly this early would be difficult to fit in the widely discussed adiabatic cold dark matter model for structure formation, but it could agree with an isocurvature version in which the cold dark matter is the remnant of a massive scalar field frozen (or squeezed) from quantum fluctuations during inflation. The squeezed field fluctuations would be Gaussian with zero mean, and the distribution of the field mass therefore would be the square of a random Gaussian process. This offers a possibly interesting new direction for the numerical exploration of models for cosmic structure formation. PMID:9419326

Plasma development in the accelerator of a 2-kJ focus discharge.

PubMed

Fischer, H; Haering, K H

1979-07-01

Optical image structures from early breakdown ( approximately 200 nsec) to focus formation (~1300 nsec) in 3 Torr hydrogen were studied by means of 2 image converter shutters having 50-nsec and 10-nsec exposure. Space charge limited cathode spots at the outer electrode (OE)-spoke-shaped positive columns across the gap-and an extended electron cloud along the center electrode (CE) determine the current flow during early breakdown. Ionization increases exponentially within the center gap plasma. This is separated from the CE by a pattern of anode drop filaments. Filament structures grow into the z-axis accelerated current sheath, which in addition carries the early spoke pattern. The sheath appears homogeneous after leaving the accelerator exit.

Folding of Polymer Chains in Early Stage of Crystallization

NASA Astrophysics Data System (ADS)

Yuan, Shichen; Miyoshi, Toshikazu

Understanding the structural formation of long polymer chains in the early stage of crystallization is one of the long-standing problems in polymer science. Using solid state NMR, we investigated chain trajectory of isotactic polypropylene in the mesomorphic nano-domains formed via rapid and deep quenching. Comparison of experimental and simulated 13C-13C Double Quantum (DQ) buildup curves demonstrated that instead of random re-entry models and solidification models, individual chains in the mesomorphic form iPP adopt adjacent reentry sequences with an average folding number of = 3-4 (assuming an adjacent re-entry fraction of of 100%) during mesomorphic formation process via nucleation and growth in the early stage. This work was financially supported by the National Science Foundation (Grant DMR-1105829 and 1408855) and startup funds from the UA.

FGF8 coordinates tissue elongation and cell epithelialization during early kidney tubulogenesis

PubMed Central

Atsuta, Yuji; Takahashi, Yoshiko

2015-01-01

When a tubular structure forms during early embryogenesis, tubular elongation and lumen formation (epithelialization) proceed simultaneously in a spatiotemporally coordinated manner. We here demonstrate, using the Wolffian duct (WD) of early chicken embryos, that this coordination is regulated by the expression of FGF8, which shifts posteriorly during body axis elongation. FGF8 acts as a chemoattractant on the leader cells of the elongating WD and prevents them from epithelialization, whereas static (‘rear’) cells that receive progressively less FGF8 undergo epithelialization to form a lumen. Thus, FGF8 acts as a binary switch that distinguishes tubular elongation from lumen formation. The posteriorly shifting FGF8 is also known to regulate somite segmentation, suggesting that multiple types of tissue morphogenesis are coordinately regulated by macroscopic changes in body growth. PMID:26130757

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amdursky, Nadav; Gazit, Ehud; Rosenman, Gil, E-mail: gilr@eng.tau.ac.il

Highlights: Black-Right-Pointing-Pointer We observe lag-phase crystallization process in insulin. Black-Right-Pointing-Pointer The crystallization is a result of the formation of higher order oligomers. Black-Right-Pointing-Pointer The crystallization also changes the secondary structure of the protein. Black-Right-Pointing-Pointer The spectroscopic signature can be used for amyloid inhibitors assay. -- Abstract: Insulin, as other amyloid proteins, can form amyloid fibrils at certain conditions. The self-assembled aggregation process of insulin can result in a variety of conformations, starting from small oligomers, going through various types of protofibrils, and finishing with bundles of fibrils. One of the most common consensuses among the various self-assembly processes that aremore » suggested in the literature is the formation of an early stage nucleus conformation. Here we present an additional insight for the self-assembly process of insulin. We show that at the early lag phase of the process (prior to fibril formation) the insulin monomers self-assemble into ordered nanostructures. The most notable feature of this early self-assembly process is the formation of nanocrystalline nucleus regions with a strongly bound electron-hole confinement, which also change the secondary structure of the protein. Each step in the self-assembly process is characterized by an optical spectroscopic signature, and possesses a narrow size distribution. By following the spectroscopic signature we can measure the potency of amyloid fibrils inhibitors already at the lag phase. We further demonstrate it by the use of epigallocatechin gallate, a known inhibitor for insulin fibrils. The findings can result in a spectroscopic-based application for the analysis of amyloid fibrils inhibitors.« less

Concept formation: a supportive process for early career nurses.

PubMed

Thornley, Tracey; West, Sandra

2010-09-01

Individuals come to understand abstract constructs such as that of the 'expert' through the formation of concepts. Time and repeated opportunity for observation to support the generalisation and abstraction of the developing concept are essential if the concept is to form successfully. Development of an effective concept of the 'expert nurse' is critical for early career nurses who are attempting to integrate theory, values and beliefs as they develop their clinical practice. This study explores the use of a concept development framework in a grounded theory study of the 'expert nurse'. Qualitative. Using grounded theory methods for data collection and analysis, semi-structured interviews were conducted with registered nurses. The participants were asked to describe their concept of the 'expert nurse' and to discuss their experience of developing this. Participants reported forming their concept of the 'expert nurse', after multiple opportunities to engage with nurses identified as 'expert'. This identification did not necessarily relate to the designated position of the 'expert nurse' or assigned mentors. When the early career nurse does not successfully form a concept of the 'expert nurse', difficulties in personal and professional development including skill/knowledge development may arise. To underpin development of their clinical practice effectively, early career nurses need to be provided with opportunities that facilitate the purposive formation of their own concept of the 'expert nurse'. Formation of this concept is not well supported by the common practice of assigning mentors. Early career nurses must be provided with the time and the opportunity to individually develop and refine their concept of the 'expert nurse'. To achieve this, strategies including providing opportunities to engage with expert nurses and discussion of the process of concept formation and its place in underpinning personal judgments may be of assistance. © 2010 Blackwell Publishing Ltd.

An Early Jurassic 40Ar/39Ar Age for the Puchezh-Katunki Impact Structure (Russia) — No Causal Link to an Extinction Event

NASA Astrophysics Data System (ADS)

Holm-Alwmark, S.; Alwmark, C.; Lindström, S.; Ferrière, L.; Scherstén, A.; Masaitis, V. L.; Mashchak, M. S.; Naumov, M. V.

2016-08-01

We propose a revised age of 192.0 ± 0.8 Ma for the formation of the Puchezh-Katunki impact structure, Russia, based on 40Ar/39Ar step-heating analyses of five impact melt rock samples. This age does not correlate with any known extinction event.

Soot Formation in Laminar Acetylene/Air Diffusion Flames at Atmospheric Pressure. Appendix C

NASA Technical Reports Server (NTRS)

Xu, F.; Faeth, G. M.; Urban, D. L. (Technical Monitor); Yuan, Z.-G. (Technical Monitor)

2000-01-01

The flame structure and soot-formation (soot nucleation and growth) properties of axisymmetric laminar coflowing jet diffusion flames were studied experimentally. Test conditions involved acetylene-nitrogen jets burning in coflowing air at atmospheric pressure. Measurements were limited to the axes of the flames and included soot concentrations, soot temperatures, soot structure, major gas species concentrations, radical species (H, OH, and O) concentrations, and gas velocities. The results show that as distance increases along the axes of the flames, detectable soot formation begins when significant H concentrations are present, and ends when acetylene concentrations become small. Species potentially associated with soot oxidation-O2, CO2, H2O, O, and OH-are present throughout the soot-formation region so that soot formation and oxidation proceed at the same time. Strong rates of soot growth compared to soot nucleation early in the soot-formation process, combined with increased rates of soot nucleation and oxidation as soot formation proceeds, causes primary soot particle diameters to reach a maximum relatively early in the soot-formation process. Aggregation of primary soot particles proceeds, however, until the final stages of soot oxidation. Present measurements of soot growth (corrected for soot oxidation) in laminar diffusion flames were consistent with earlier measurements of soot growth in laminar premixed flames and exhibited encouraging agreement with existing hydrogen-abstraction/carbon-addition (HACA) soot growth mechanisms in the literature that were developed based on measurements within laminar premixed flames. Measured primary soot particle nucleation rates in the present laminar diffusion flames also were consistent with corresponding rates measured in laminar premixed flames and yielded a crude correlation in terms of acetylene and H concentrations and the temperature.

Soot Formation in Laminar Acetylene/Air Diffusion Flames at Atmospheric Pressure. Appendix H

NASA Technical Reports Server (NTRS)

Xu, F.; Faeth, G. M.; Yuan, Z.-G. (Technical Monitor); Urban, D. L. (Technical Monitor); Yuan, Z.-G. (Technical Monitor)

2001-01-01

The flame structure and soot-formation (soot nucleation and growth) properties of axisymmetric laminar coflowing jet diffusion flames were studied experimentally. Test conditions involved acetylene-nitrogen jets burning in coflowing air at atmospheric pressure. Measurements were limited to the axes of the flames and included soot concentrations, soot temperatures, soot structure, major gas species concentrations, radical species (H, OH, and O) concentrations, and gas velocities. The results show that as distance increases along the axes of the flames, detectable soot formation begins when significant H concentrations are present, and ends when acetylene concentrations become small. Species potentially associated with soot oxidation-O2, CO2, H2O, O, and OH-are present throughout the soot-formation region so that soot formation and oxidation proceed at the same time. Strong rates of soot growth compared to soot nucleation early in the soot-formation process, combined with increased rates of soot nucleation and oxidation as soot formation proceeds, causes primary soot particle diameters to reach a maximum relatively early in the soot-formation process. Aggregation of primary soot particles proceeds, however, until the final stages of soot oxidation. Present measurements of soot growth (corrected for soot oxidation) in laminar diffusion flames were consistent with earlier measurements of soot growth in laminar premixed flames and exhibited encouraging agreement with existing hydrogen-abstraction/carbon-addition (HACA) soot growth mechanisms in the literature that were developed based on measurements within laminar premixed flames. Measured primary soot particle nucleation rates in the present laminar diffusion flames also were consistent with corresponding rates measured in laminar premixed flames and yielded a crude correlation in terms of acetylene and H concentrations and the temperature.

Soot Formation in Laminar Acetylene/Air Diffusion Flames at Atmospheric Pressure. Appendix J

NASA Technical Reports Server (NTRS)

Xu, F.; Faeth, G. M.; Urban, D. L. (Technical Monitor); Yuan, Z.-G. (Technical Monitor)

2001-01-01

The flame structure and soot-formation (soot nucleation and growth) properties of axisymmetric laminar coflowing jet diffusion flames were studied experimentally. Test conditions involved acetylene-nitrogen jets burning in coflowing air at atmospheric pressure. Measurements were limited to the axes of the flames and included soot concentrations, soot temperatures, soot structure, major gas species concentrations, radical species (H, OH, and O) concentrations, and gas velocities. The results show that as distance increases along the axes of the flames, detectable soot formation begins when significant H concentrations are present, and ends when acetylene concentrations become small. Species potentially associated with soot oxidation--O2, CO2, H2O, O, and OH-are present throughout the soot-formation region so that soot formation and oxidation proceed at the same time. Strong rates of soot growth compared to soot nucleation early in the soot-formation process, combined with increased rates of soot nucleation and oxidation as soot formation proceeds, causes primary soot particle diameters to reach a maximum relatively early in the soot-formation process. Aggregation of primary soot particles proceeds, however, until the final stages of soot oxidation. Present measurements of soot growth (corrected for soot oxidation) in laminar diffusion flames were consistent with earlier measurements of soot growth in laminar premixed flames and exhibited encouraging agreement with existing hydrogen-abstraction/carbon-addition (HACA) soot growth mechanisms in the literature that were developed based on measurements within laminar premixed flames. Measured primary soot particle nucleation rates in the present laminar diffusion flames also were consistent with corresponding rates measured in laminar premixed flames and yielded a crude correlation in terms of acetylene and H concentrations and the temperature.

The formation of blobs from a pure interchange process

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, P., E-mail: pzhu@ustc.edu.cn; Department of Engineering Physics, University of Wisconsin-Madison, Madison, Wisconsin 53706; Sovinec, C. R.

2015-02-15

In this work, we focus on examining a pure interchange process in a shear-less slab configuration as a prototype mechanism for blob formation. We employ full magnetohydrodynamic simulations to demonstrate that the blob-like structures can emerge through the nonlinear development of a pure interchange instability originating from a pedestal-like transition region. In the early nonlinear stage, filamentary structures develop and extend in the direction of the effective gravity. The blob-like structures appear when the radially extending filaments break off and disconnect from the core plasma. The morphology and the dynamics of these filaments and blobs vary dramatically with a sensitivemore » dependence on the dissipation mechanisms in the system and the initial perturbation. Despite the complexity in morphology and dynamics, the nature of the entire blob formation process in the shear-less slab configuration remains strictly interchange without involving any change in magnetic topology.« less

Cosmic Rays and Gamma-Rays in Large-Scale Structure

NASA Astrophysics Data System (ADS)

Inoue, Susumu; Nagashima, Masahiro; Suzuki, Takeru K.; Aoki, Wako

2004-12-01

During the hierarchical formation of large scale structure in the universe, the progressive collapse and merging of dark matter should inevitably drive shocks into the gas, with nonthermal particle acceleration as a natural consequence. Two topics in this regard are discussed, emphasizing what important things nonthermal phenomena may tell us about the structure formation (SF) process itself. 1. Inverse Compton gamma-rays from large scale SF shocks and non-gravitational effects, and the implications for probing the warm-hot intergalactic medium. We utilize a semi-analytic approach based on Monte Carlo merger trees that treats both merger and accretion shocks self-consistently. 2. Production of 6Li by cosmic rays from SF shocks in the early Galaxy, and the implications for probing Galaxy formation and uncertain physics on sub-Galactic scales. Our new observations of metal-poor halo stars with the Subaru High Dispersion Spectrograph are highlighted.

Shell structures in aluminum nanocontacts at elevated temperatures

PubMed Central

2012-01-01

Aluminum nanocontact conductance histograms are studied experimentally from room temperature up to near the bulk melting point. The dominant stable configurations for this metal show a very early crossover from shell structures at low wire diameters to ionic subshell structures at larger diameters. At these larger radii, the favorable structures are temperature-independent and consistent with those expected for ionic subshell (faceted) formations in face-centered cubic geometries. When approaching the bulk melting temperature, these local stability structures become less pronounced as shown by the vanishing conductance histogram peak structure. PMID:22325572

Early Mars may have had a methanol ocean

NASA Astrophysics Data System (ADS)

Tang, Yan; Chen, Qianwang; Huang, Yujie

2006-01-01

The detection of gray crystalline hematite deposits on Mars by Thermal Emission Spectrometer (TES) has been used to argue for the presence of liquid water on Mars in the distant past. By methanol-thermal treatment of anhydrous FeCl 3 at low temperatures (70-160 °C), crystalline gray hematite with layered structure was synthesized, based on this result an alternative explanation for the origin of martian hematite deposits is suggested. Methane could be abundant in the early martian atmosphere; process such as photochemical oxidation of methane could result in the formation of ocean or pool of organic compounds such as methanol, which provides an environment for the formation of large-scale hematite deposits on Mars.

Geophysical Plasmas and Atmospheric Modeling.

DTIC Science & Technology

1982-01-01

analysis of structuring observed in the STARFISH event and early time structure formation in the LWIR predicted for a standard event, (2) IR structure...for the LWIR problem, the SCORPIO code was coupled to a numerical module which describes the behavior of the Rayleigh-Taylor insta- bility, as discussed...the LWIR C1-14p) induced by sunlight and earthshine. Of the constituents in nuclear debris the uranium atom is of particular interest because it

Planned residential units: New development trajectories

NASA Astrophysics Data System (ADS)

Fedchenko, Irina

2017-01-01

The paper summarizes the transformation patterns of functional, morphological, social, and administrative structures of planned residential units - district (Russia, Eastern Europe), neighborhood (USA), community (UK, Europe), as the smallest structural and planning elements of the settlements. The study is based on the author's own on-site survey of the existing and new planned residential units, as well as on the analysis of theoretical sources. The multidisciplinary analysis of the theoretical concepts and on-site survey results showed that planned residential units formed in the early twentieth century retain their social and planning importance and identity, evolve and acquire new features and forms. At the same time, according to the current regulatory and legal instruments they remain basic planning elements of urban structure in the early twenty-first century. This paper also includes experimental analysis of the theoretical concepts of planned residential units' transformation, their conceptual planning model and formation principles in the early twenty-first century.

Biotic association and palaeoenvironmental reconstruction of the "Loma del Pterodaustro" fossil site (Early Cretaceous, Argentina)

USGS Publications Warehouse

Chiappe, L.; Rivarola, D.; Cione, A.; Fregenal-Martinez, M.; Sozzi, H.; Buatois, L.; Gallego, O.; Laza, J.; Romero, E.; Lopez-Arbarello, A.; Buscalioni, A.; Marsicano, C.; Adamonis, S.; Ortega, F.; McGehee, S.; Di, Iorio O.

1998-01-01

A sedimentological analysis of the basal section of the Early Cretaceous, lacustrine Lagarcito Formation at "Loma del Pterodaustro" (San Luis, Argentina) and a summary of its biological components are presented. Three sedimentological facies can be recognized in the basal sequence of the Lagarcito Formation. Fossil remains are particularly abundant in laminated claystones of a facies interpreted as deposits formed in offshore areas of the lake. The preservation of delicate structures allows recognition of these deposits as a Konservat Lagersta??tte. Up to now, rocks at "Loma del Pterodaustro" have yielded plants, conchostracans, semionotid and pleuropholid fishes, pterodactyloid pterosaurs, and a variety of invertebrate traces. The chronology of the Lagarcito Formation is discussed and it is concluded that this unit is of Albian age. The palaeoenvironment of deposition of the basal sequence of the Lagarcito Formation at "Loma del Pterodaustro" is interpreted as a perennial, shallow lake developed within an alluvial plain, under semiarid climatic conditions.

Time development in the early history of social networks: link stabilization, group dynamics, and segregation.

PubMed

Bruun, Jesper; Bearden, Ian G

2014-01-01

Studies of the time development of empirical networks usually investigate late stages where lasting connections have already stabilized. Empirical data on early network history are rare but needed for a better understanding of how social network topology develops in real life. Studying students who are beginning their studies at a university with no or few prior connections to each other offers a unique opportunity to investigate the formation and early development of link patterns and community structure in social networks. During a nine week introductory physics course, first year physics students were asked to identify those with whom they communicated about problem solving in physics during the preceding week. We use these students' self reports to produce time dependent student interaction networks. We investigate these networks to elucidate possible effects of different student attributes in early network formation. Changes in the weekly number of links show that while roughly half of all links change from week to week, students also reestablish a growing number of links as they progress through their first weeks of study. Using the Infomap community detection algorithm, we show that the networks exhibit community structure, and we use non-network student attributes, such as gender and end-of-course grade to characterize communities during their formation. Specifically, we develop a segregation measure and show that students structure themselves according to gender and pre-organized sections (in which students engage in problem solving and laboratory work), but not according to end-of-coure grade. Alluvial diagrams of consecutive weeks' communities show that while student movement between groups are erratic in the beginning of their studies, they stabilize somewhat towards the end of the course. Taken together, the analyses imply that student interaction networks stabilize quickly and that students establish collaborations based on who is immediately available to them and on observable personal characteristics.

Methane hydrate formation and decomposition: structural studies via neutron diffraction and empirical potential structure refinement.

PubMed

Thompson, Helen; Soper, Alan K; Buchanan, Piers; Aldiwan, Nawaf; Creek, Jefferson L; Koh, Carolyn A

2006-04-28

Neutron diffraction studies with hydrogen/deuterium isotope substitution measurements are performed to investigate the water structure at the early, medium, and late periods of methane clathrate hydrate formation and decomposition. These measurements are coupled with simultaneous gas consumption measurements to track the formation of methane hydrate from a gas/water mixture, and then the complete decomposition of hydrate. Empirical potential structure refinement computer simulations are used to analyze the neutron diffraction data and extract from the data the water structure in the bulk methane hydrate solution. The results highlight the significant changes in the water structure of the remaining liquid at various stages of hydrate formation and decomposition, and give further insight into the way in which hydrates form. The results also have important implications on the memory effect, suggesting that the water structure in the presence of hydrate crystallites is significantly different at equivalent stages of forming compared to decomposing. These results are in sharp contrast to the previously reported cases when all remaining hydrate crystallites are absent from the solution. For these systems there is no detectable change in the water structure or the methane hydration shell before hydrate formation and after decomposition. Based on the new results presented in this paper, it is clear that the local water structure is affected by the presence of hydrate crystallites, which may in turn be responsible for the "history" or "memory" effect where the production of hydrate from a solution of formed and then subsequently melted hydrate is reportedly much quicker than producing hydrate from a fresh water/gas mixture.

Investigation of a Modern Incipient Stromatolite from Obsidian Pool Prime, Yellowstone National Park: Implications for Early Lithification in the Formation of Light-Dark Stromatolite Laminae

NASA Astrophysics Data System (ADS)

Corsetti, F. A.; Berelson, W.; Pepe-Ranney, C. P.; Mata, S. A.; Spear, J. R.

2016-12-01

Stromatolites have been defined multiple ways, but the presence of lamination is common to all definitions. Despite this commonality, the origin of the lamination in many ancient stromatolites remains vague. Lamination styles vary, but sub-mm light-dark couplets are common in many ancient stromatolites. Here, we investigate an actively forming incipient stromatolite from Obsidian Pool Prime (OPP), a hot spring in Yellowstone National Park, to better understand the formation of light-dark couplets similar to many ancient stromatolites in texture and structure. In the OPP stromatolites, a dense network of layer-parallel bundles of cyanobacterial filaments (a dark layer) is followed by an open network of layer-perpendicular or random filaments (a light layer) that reflect a diurnal cycle in the leading edge of the microbial mat that coats the stromatolite's surface. Silica crust encases the cyanobacterial filaments maintaining the integrity of the lamination. Bubbles formed via oxygenic photosynthesis are commonly trapped within the light layers, indicating that lithification occurs rapidly before the bubbles can collapse. The filamentous, non-heterocystous stromatoite-building cyanobacterium from OPP is most closely related to a stromatolite-building cyanobacterium from a hot spring in Japan. Once built, "tenants" from multiple microbial phyla move into the structure, mixing and mingling to produce a complicated integrated biogeochemical signal that may be difficult to untangle in ancient examples. While the cyanobacterial response to the diurnal cycle has been previously implicated in the formation of light-dark couplets, the OPP example highlights the importance of early lithification in maintaining the fabric. Thus, the presence of light-dark couplets and bubble structures may indicate very early lithification and therefore a certain degree of mineral saturation in the ancient ocean or other aquatic system, and that bubble structures, if present, may be evidence for oxygenic photosynthesis. Other lamination hypotheses suggest that lithification is driven by sulfate reduction within a stratified microbial mat—a possibility in some stromatolites, but the lithification engine must move deeper in the mat where the formation of fine light-dark couplets becomes more problematic.

Spirals, Bridges and Tails: Star Formation and the Disturbed ISM in Colliding Galaxies before Merger.

NASA Astrophysics Data System (ADS)

Struck, Curtis; Appleton, Philip; Charmandaris, Vassilis; Reach, William; Smith, Beverly

2004-09-01

We propose to use Spitzer's unprecedented sensitivity and wide spatial and spectral evolution to study the distribution of star formation in a sample of colliding galaxies with a wide range of tidal and splash structures. Star forming environments like those in strong tidal spirals, and in extra-disk structures like tails were probably far more common in the early stages of galaxy evolution, and important contributors to the net star formation. Using the Spitzer data and data from other wavebands, we will compare the pattern of SF to maps of gas and dust density and phase distribution. With the help of dynamical modeling, we will relate these in turn to dynamical triggers, to better understand the trigger mechanisms. We expect our observations to complement both the SINGS archive and the archives produced by other GO programs, such as those looking at merger remnants or tidal dwarf formation.

Significance of hypoburrow nodule formation associated with large biogenic sedimentary structures in open-marine bay siliciclastics of the Upper Eocene Birket Qarun Formation, Wadi El-Hitan, Fayum, Egypt

NASA Astrophysics Data System (ADS)

Abdel-Fattah, Zaki A.; Gingras, Murray K.; Pemberton, S. George

Unusually large biogenic sedimentary structures from the shallow quiescent-marine siliciclastics of the Upper Eocene Birket Qarun Formation in the Fayum area of Egypt display pronounced concretion formation around the trace fossils. The structures are massive, and vary morphologically, forming branched pillars (up to dm-scale), vertical (up to 180 cm height) amphora-like masses, and 3-D box-work "maze". Bioturbation, mainly Thalassinoides attributable to the Glossifungites ichnofacies, mediated and modified the physical and chemical microenvironments influencing early diagenesis; i.e., burrows promote the precipitation of pervasive calcite-dominated cement. The inferred paragenesis, combined with the negative (light) carbon and oxygen stable-isotopic values of the bulk calcite (δ 13C PDB from -0.94 to -4.98‰ and δ 18O PDB from -4.63 to -7.22‰) and bulk dolomite (δ 13C PDB from -2.05 to -8.23‰ and δ 18O PDB from -1.41 to -11.20‰), imply that the pore-water carbon was derived directly from seawater and dissolution of metastable carbonate, which was mediated by bacterial decomposition of organic matter and mixing of meteoric ground water. Thereby, the carbonate cement precipitated mostly under eodiagenetic conditions near the sediment/water interface (<~3 m in depth). The distribution of these structures is confined to parasequence-bounding flooding surfaces (generally expressed as transgressive surfaces of erosion). Notably, sedimentological, ichnological and paragenetic data can be related to stratigraphic evolution such that geochemical and textural evidence is distinctly associated with (1) early cementation of the host sandstone during highstands of relative sea level, (2) the formation of firmgrounds during low relative sea level, (3) the development of a Glossifungites-demarcated discontinuity during initial relative sea-level rise, and (4) continued cementation with rising relative sea level. This was followed by burial diagenesis, evidence for which is derived from petrographic and isotopic data.

Utilizing borehole electrical images to interpret lithofacies of fan-delta: A case study of Lower Triassic Baikouquan Formation in Mahu Depression, Junggar Basin, China

NASA Astrophysics Data System (ADS)

Yuan, Rui; Zhang, Changmin; Tang, Yong; Qu, Jianhua; Guo, Xudong; Sun, Yuqiu; Zhu, Rui; Zhou, Yuanquan (Nancy)

2017-11-01

Large-scale conglomerate fan-delta aprons were typical deposits on the slope of Mahu Depression during the Early Triassic. Without outcrops, it is difficult to study the lithofacies only by examining the limited cores from the main oil-bearing interval of the Baikouquan Formation. Borehole electrical imaging log provides abundant high-resolution geologic information that is obtainable only from real rocks previously. Referring to the lithology and sedimentary structure of cores, a case study of fan-deltas in the Lower Triassic Baikouquan Formation of the Mahu Depression presents a methodology for interpreting the complicated lithofacies utilizing borehole electrical images. Eleven types of lithologies and five types of sedimentary structures are summarized in borehole electrical images. The sediments are fining upward from gravel to silt and clay in the Baikouquan Formation. Fine-pebbles and granules are the main deposits in T1b1 and T1b2, but sandstones, siltstones and mudstones are more developed in T1b3. The main sedimentary textures are massive beddings, cross beddings and scour-and-fill structures. Parallel and horizontal beddings are more developed in T1b3 relatively. On integrated analysis of the lithology and sedimentary structure, eight lithofacies from electrical images, referred to as image lithofacies, is established for the fan-deltas. Granules to coarse-pebbles within massive beddings, granules to coarse-pebbles within cross and parallel beddings, siltstones within horizontal and massive beddings are the most developed lithofacies respectively in T1b1, T1b2 and T1b3. It indicates a gradual rise of the lake level of Mahu depression during the Early Triassic, with the fan-delta aprons retrograding towards to the margin of the basin. Therefore, the borehole electrical imaging log compensate for the limitation of cores of the Baikouquan Formation, providing an effective new approach to interpret the lithofacies of fan-delta.

A SoxC gene related to larval shell development and co-expression analysis of different shell formation genes in early larvae of oyster.

PubMed

Liu, Gang; Huan, Pin; Liu, Baozhong

2017-06-01

Among the potential larval shell formation genes in mollusks, most are expressed in cells surrounding the shell field during the early phase of shell formation. The only exception (cgi-tyr1) is expressed in the whole larval mantle and thus represents a novel type of expression pattern. This study reports another gene with such an expression pattern. The gene encoded a SoxC homolog of the Pacific oyster Crassostrea gigas and was named cgi-soxc. Whole-mount in situ hybridization revealed that the gene was highly expressed in the whole larval mantle of early larvae. Based on its spatiotemporal expression, cgi-soxc is hypothesized to be involved in periostracum biogenesis, biomineralization, and regulation of cell proliferation. Furthermore, we investigated the interrelationship between cgi-soxc expression and two additional potential shell formation genes, cgi-tyr1 and cgi-gata2/3. The results confirmed co-expression of the three genes in the larval mantle of early D-veliger. Nevertheless, cgi-gata2/3 was only expressed in the mantle edge, and the other two genes were expressed in all mantle cells. Based on the spatial expression patterns of the three genes, two cell groups were identified from the larval mantle (tyr1 + /soxc + /gata2/3 + cells and tyr1 + /soxc + /gata2/3 - cells) and are important to study the differentiation and function of this tissue. The results of this study enrich our knowledge on the structure and function of larval mantle and provide important information to understand the molecular mechanisms of larval shell formation.

Physical mechanisms of longitudinal vortexes formation, appearance of zones with high heat fluxes and early transition in hypersonic flow over delta wing with blunted leading edges

NASA Astrophysics Data System (ADS)

Alexandrov, S. V.; Vaganov, A. V.; Shalaev, V. I.

2016-10-01

Processes of vortex structures formation and they interactions with the boundary layer in the hypersonic flow over delta wing with blunted leading edges are analyzed on the base of experimental investigations and numerical solutions of Navier-Stokes equations. Physical mechanisms of longitudinal vortexes formation, appearance of abnormal zones with high heat fluxes and early laminar turbulent transition are studied. These phenomena were observed in many high-speed wind tunnel experiments; however they were understood only using the detailed analysis of numerical modeling results with the high resolution. Presented results allowed explaining experimental phenomena. ANSYS CFX code (the DAFE MIPT license) on the grid with 50 million nodes was used for the numerical modeling. The numerical method was verified by comparison calculated heat flux distributions on the wing surface with experimental data.

Exploring the dusty star-formation in the early Universe using intensity mapping

NASA Astrophysics Data System (ADS)

Lagache, Guilaine

2018-05-01

In the last decade, it has become clear that the dust-enshrouded star formation contributes significantly to early galaxy evolution. Detection of dust is therefore essential in determining the properties of galaxies in the high-redshift universe. This requires observations at the (sub-)millimeter wavelengths. Unfortunately, sensitivity and background confusion of single dish observations on the one hand, and mapping efficiency of interferometers on the other hand, pose unique challenges to observers. One promising route to overcome these difficulties is intensity mapping of fluctuations which exploits the confusion-limited regime and measures the collective light emission from all sources, including unresolved faint galaxies. We discuss in this contribution how 2D and 3D intensity mapping can measure the dusty star formation at high redshift, through the Cosmic Infrared Background (2D) and [CII] fine structure transition (3D) anisotropies.

Structural Components of Synaptic Plasticity and Memory Consolidation

PubMed Central

Bailey, Craig H.; Kandel, Eric R.; Harris, Kristen M.

2015-01-01

Consolidation of implicit memory in the invertebrate Aplysia and explicit memory in the mammalian hippocampus are associated with remodeling and growth of preexisting synapses and the formation of new synapses. Here, we compare and contrast structural components of the synaptic plasticity that underlies these two distinct forms of memory. In both cases, the structural changes involve time-dependent processes. Thus, some modifications are transient and may contribute to early formative stages of long-term memory, whereas others are more stable, longer lasting, and likely to confer persistence to memory storage. In addition, we explore the possibility that trans-synaptic signaling mechanisms governing de novo synapse formation during development can be reused in the adult for the purposes of structural synaptic plasticity and memory storage. Finally, we discuss how these mechanisms set in motion structural rearrangements that prepare a synapse to strengthen the same memory and, perhaps, to allow it to take part in other memories as a basis for understanding how their anatomical representation results in the enhanced expression and storage of memories in the brain. PMID:26134321

Chaos, patterns, coherent structures, and turbulence: Reflections on nonlinear science.

PubMed

Ecke, Robert E

2015-09-01

The paradigms of nonlinear science were succinctly articulated over 25 years ago as deterministic chaos, pattern formation, coherent structures, and adaptation/evolution/learning. For chaos, the main unifying concept was universal routes to chaos in general nonlinear dynamical systems, built upon a framework of bifurcation theory. Pattern formation focused on spatially extended nonlinear systems, taking advantage of symmetry properties to develop highly quantitative amplitude equations of the Ginzburg-Landau type to describe early nonlinear phenomena in the vicinity of critical points. Solitons, mathematically precise localized nonlinear wave states, were generalized to a larger and less precise class of coherent structures such as, for example, concentrated regions of vorticity from laboratory wake flows to the Jovian Great Red Spot. The combination of these three ideas was hoped to provide the tools and concepts for the understanding and characterization of the strongly nonlinear problem of fluid turbulence. Although this early promise has been largely unfulfilled, steady progress has been made using the approaches of nonlinear science. I provide a series of examples of bifurcations and chaos, of one-dimensional and two-dimensional pattern formation, and of turbulence to illustrate both the progress and limitations of the nonlinear science approach. As experimental and computational methods continue to improve, the promise of nonlinear science to elucidate fluid turbulence continues to advance in a steady manner, indicative of the grand challenge nature of strongly nonlinear multi-scale dynamical systems.

Evidence for a complex archean deformational history; southwestern Michipicoten Greenstone Belt, Ontario

NASA Technical Reports Server (NTRS)

Mcgill, George E.; Shrady, Catherine H.

1986-01-01

The Michipicoten Greenstone Belt extends for about 150 km ENE from the northeastern angle of Lake Superior. In common with many other Archean greenstone belts, it is characterized by generally steep bedding dips and a distribution of major lithologic types suggesting a crudely synclinal structure for the belt as a whole. Detailed mapping and determination of structural sequence demonstrates that the structure is much more complex. The Archean history of the belt includes formation of at least three regionally significant cleavages, kilometer-scale overturning, extensive shearing, and diabase intrusion. Most well defined, mappable 'packages' of sedimentary rocks appear to be bounded by faults. These faults were active relatively early in the structural history of the belt, when extensive overturning also occurred. Steepening of dips, NW-SE shortening, development of steep NE cleavage, and pervasive shearing all postdate the early faulting and the regional overturning, obscuring much of the detail needed to define the geometry of the earlier structures. The results obtained so far suggest, however, that the Michipicoten Greenstone Belt underwent an early stage of thrusting and associated isoclinal folding, probably in a convergent tectonic environment.

Origin of chemically distinct discs in the Auriga cosmological simulations

NASA Astrophysics Data System (ADS)

Grand, Robert J. J.; Bustamante, Sebastián; Gómez, Facundo A.; Kawata, Daisuke; Marinacci, Federico; Pakmor, Rüdiger; Rix, Hans-Walter; Simpson, Christine M.; Sparre, Martin; Springel, Volker

2018-03-01

The stellar disc of the Milky Way shows complex spatial and abundance structure that is central to understanding the key physical mechanisms responsible for shaping our Galaxy. In this study, we use six very high resolution cosmological zoom-in simulations of Milky Way-sized haloes to study the prevalence and formation of chemically distinct disc components. We find that our simulations develop a clearly bimodal distribution in the [α/Fe]-[Fe/H] plane. We find two main pathways to creating this dichotomy, which operate in different regions of the galaxies: (a) an early (z > 1) and intense high-[α/Fe] star formation phase in the inner region (R ≲ 5 kpc) induced by gas-rich mergers, followed by more quiescent low-[α/Fe] star formation; and (b) an early phase of high-[α/Fe] star formation in the outer disc followed by a shrinking of the gas disc owing to a temporarily lowered gas accretion rate, after which disc growth resumes. In process (b), a double-peaked star formation history around the time and radius of disc shrinking accentuates the dichotomy. If the early star formation phase is prolonged (rather than short and intense), chemical evolution proceeds as per process (a) in the inner region, but the dichotomy is less clear. In the outer region, the dichotomy is only evident if the first intense phase of star formation covers a large enough radial range before disc shrinking occurs; otherwise, the outer disc consists of only low-[α/Fe] sequence stars. We discuss the implication that both processes occurred in the Milky Way.

Elastic instability of the nano-structured state as an intrinsic probe to study the early formation stages of sol gel derived (Pb1-xCax)TiO3 thin films

NASA Astrophysics Data System (ADS)

Bretos, I.; Ricote, J.; Jiménez-Riobóo, R. J.; Pardo, L.; Calzada, M. L.

2007-12-01

A novel method to investigate the early formation stages of polycrystalline (Pb1-xCax)TiO3 (PCT) perovskite films by means of traditional Brillouin and micro-Brillouin spectroscopy (BS, mBS) is described in the present work. The films were prepared by chemical solution deposition (CSD) onto oxidized (100)Si substrates and treated at temperatures between 350 650 °C by rapid thermal processing (RTP). The elastic instability observed by Brillouin spectroscopy at the nano-structured state of the PCT films was used here to determine their crystallization temperatures. Coexistence of different nanocrystalline phases (e.g., pyrochlore, perovskite) in the films could also be detected by this technique. The reliability of these results is demonstrated by complementary information obtained by X-ray diffraction (XRD) and scanning force microscopy (SFM). The effects of the annealing temperature and of the Ca2+ content on the crystallization process of these films are also discussed.

Developing a customized multiple interview for dental school admissions.

PubMed

Gardner, Karen M

2014-04-01

From the early 1980s until recently, the University of British Columbia Faculty of Dentistry had employed the Canadian Dental Association (CDA) Structured Interview in its Phase 2 admissions process (with those applicants invited for interviews). While this structured interview had demonstrated reliability and validity, the Faculty of Dentistry came to believe that a multiple interview process using scenarios would help it better identify applicants who would match its mission. After a literature review that investigated such interview protocols as unstructured, semi-structured, computerized, and telephone formats, a multiple interview format was chosen. This format was seen as an emerging trend, with evidence that it has been deemed fairer by applicants, more reliable by interviewers, more difficult for applicants to provide set answers for the scenarios, and not to require as many interviewers as other formats. This article describes the process undertaken to implement a customized multiple interview format for admissions and reports these outcomes of the process: a smoothly running multiple interview; effective training protocols for staff, interviewers, and applicants; and reports from successful applicants and interviewers that they felt the multiple interview was a more reliable and fairer recruiting tool than other models.

Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins.

PubMed

Raimondi, Daniele; Orlando, Gabriele; Pancsa, Rita; Khan, Taushif; Vranken, Wim F

2017-08-18

Protein folding is a complex process that can lead to disease when it fails. Especially poorly understood are the very early stages of protein folding, which are likely defined by intrinsic local interactions between amino acids close to each other in the protein sequence. We here present EFoldMine, a method that predicts, from the primary amino acid sequence of a protein, which amino acids are likely involved in early folding events. The method is based on early folding data from hydrogen deuterium exchange (HDX) data from NMR pulsed labelling experiments, and uses backbone and sidechain dynamics as well as secondary structure propensities as features. The EFoldMine predictions give insights into the folding process, as illustrated by a qualitative comparison with independent experimental observations. Furthermore, on a quantitative proteome scale, the predicted early folding residues tend to become the residues that interact the most in the folded structure, and they are often residues that display evolutionary covariation. The connection of the EFoldMine predictions with both folding pathway data and the folded protein structure suggests that the initial statistical behavior of the protein chain with respect to local structure formation has a lasting effect on its subsequent states.

Crystal structure of Streptococcus pneumoniae pneumolysin provides key insights into early steps of pore formation

PubMed Central

Lawrence, Sara L.; Feil, Susanne C.; Morton, Craig J.; Farrand, Allison J.; Mulhern, Terrence D.; Gorman, Michael A.; Wade, Kristin R.; Tweten, Rodney K.; Parker, Michael W.

2015-01-01

Pore-forming proteins are weapons often used by bacterial pathogens to breach the membrane barrier of target cells. Despite their critical role in infection important structural aspects of the mechanism of how these proteins assemble into pores remain unknown. Streptococcus pneumoniae is the world’s leading cause of pneumonia, meningitis, bacteremia and otitis media. Pneumolysin (PLY) is a major virulence factor of S. pneumoniae and a target for both small molecule drug development and vaccines. PLY is a member of the cholesterol-dependent cytolysins (CDCs), a family of pore-forming toxins that form gigantic pores in cell membranes. Here we present the structure of PLY determined by X-ray crystallography and, in solution, by small-angle X-ray scattering. The crystal structure reveals PLY assembles as a linear oligomer that provides key structural insights into the poorly understood early monomer-monomer interactions of CDCs at the membrane surface. PMID:26403197

Geology, structure and age of the Nahuel Niyeu Formation in the Aguada Cecilio area, North Patagonian Massif, Argentina

NASA Astrophysics Data System (ADS)

Greco, Gerson A.; González, Pablo D.; González, Santiago N.; Sato, Ana M.; Basei, Miguel A. S.; Tassinari, Colombo C. G.; Sato, Kei; Varela, Ricardo; Llambías, Eduardo J.

2015-10-01

The low-grade Nahuel Niyeu Formation in the Aguada Cecilio area (40°50‧S-65°53‧W) shows ultramafic to felsic metaigneous rocks forming a sill swarm intercalated in the metasedimentary sequence and a polyphase deformation which permit an integrated study of the magmatic and tectonometamorphic evolution of this geological unit. In this paper we present a geological characterization of the Nahuel Niyeu Formation in the Aguada Cecilio area combining mapping, structural and metamorphic analysis with a SHRIMP U-Pb age and geochemical data from the metaigneous rocks. The metasedimentary sequence consists of alternating metagreywackes and phyllites, and minor metasandstones and granule metaconglomerates. The sills are pre-kinematic intrusions and yielded one SHRIMP U-Pb, zircon crystallization age of 513.6 ± 3.3 Ma. Their injection occurred after consolidation of the sedimentary sequence. A syn-sedimentary volcanic activity is interpreted by a metaandesite lava flow interlayered in the metasedimentary sequence. Sedimentary and igneous protoliths of the Nahuel Niyeu Formation would have been formed in a continental margin basin associated with active magmatic arc during the Cambrian Epoch 2. Two main low-grade tectonometamorphic events affected the Nahuel Niyeu Formation, one during the Cambrian Epoch 2-Early Ordovician and the other probably in the late Permian at ˜260 Ma. Local late folds could belong to the final stages of the late Permian deformation or be even younger. In a regional context, the Nahuel Niyeu and El Jagüelito formations and Mina Gonzalito Complex show a comparable Cambrian-Ordovician evolution related to the Terra Australis Orogen in the south Gondwana margin. This evolution is also coeval with the late and early stages of the Pampean and Famatinian orogenies of Central Argentina, respectively. The late Permian event recorded in the Nahuel Niyeu Formation in Aguada Cecilio area is identified by comparable structures affecting the Mina Gonzalito Complex and El Jagüelito Formation and resetting ages from granitoids. This event represents the Gondwanide Orogeny within the same Terra Australis Orogen.

Morphology of brood pouch formation in the pot-bellied seahorse Hippocampus abdominalis.

PubMed

Kawaguchi, Mari; Okubo, Ryohei; Harada, Akari; Miyasaka, Kazuki; Takada, Kensuke; Hiroi, Junya; Yasumasu, Shigeki

2017-01-01

The reproductive strategies of vertebrates are diverse. Seahorses (Pisces: Syngnathidae) possess the unique characteristic of male pregnancy; i.e., males, not females, incubate embryos in a specialized structure called a 'brood pouch'. The brood pouch is formed along the ventral midline of the tail. The lumen of the brood pouch is surrounded by loose connective tissue, called pseudoplacenta, and dermis. We visualized and evaluated the morphology of brood pouch formation in Hippocampus abdominalis to gain generalizable insights into this process in seahorses. First, we employed several staining methods to characterize the pseudoplacenta and dermis of the brood pouch of mature male seahorses. The pseudoplacenta is composed mainly of reticular fibers, while the dermis is composed mainly of collagenous fibers. Further observations showed that pouch formation is initiated by linear projections of epithelia on both ventrolateral sides of the body. These projections elongated toward the ventral midline, eventually fused together, and then formed a baggy structure composed of a single dermis layer with neither smooth muscle nor pseudoplacenta. Finally, the pseudoplacenta was formed, together with two layers of dermis and smooth muscle. Thus, a fully developed brood pouch was established. The morphology of the luminal epithelium also changed during pouch formation. We analyzed the localization of C-type lectins as markers; haCTL II was localized in both the outer and luminal epithelia of the brood pouch throughout development in the male seahorse, whereas haCTL IV, which was not detected in the early stage of seahorse development, became localized only in the luminal epithelium as development proceeded. We categorized the processes of brood pouch formation during male seahorse development into three stages: (1) the early stage, characterized by formation of a baggy structure from the primordium; (2) the middle stage, characterized by the differentiation and establishment of brood pouch-specific tissues; and (3) the late stage, characterized by a fully formed pouch with developing blood vessels and a pouch fold ultimately capable of carrying and incubating embryos.

Nanoparticle conversion to biofilms: in vitro demonstration using serum-derived mineralo-organic nanoparticles.

PubMed

Wong, Tsui-Yin; Peng, Hsin-Hsin; Wu, Cheng-Yeu; Martel, Jan; Ojcius, David M; Hsu, Fu-Yung; Young, John D

2015-01-01

Mineralo-organic nanoparticles (NPs) detected in biological fluids have been described as precursors of physiological and pathological calcifications in the body. Our main objective was to examine the early stages of mineral NP formation in body fluids. A nanomaterial approach based on atomic force microscopy, dynamic light scattering, electron microscopy and spectroscopy was used. The mineral particles, which contain the serum proteins albumin and fetuin-A, initially precipitate in the form of round amorphous NPs that gradually grow in size, aggregate and coalesce to form crystalline mineral films similar to the structures observed in calcified human arteries. Our study reveals the early stages of particle formation and provides a platform to analyze the role(s) of mineralo-organic NPs in human tissues.

Hedgehog signaling is required for formation of the notochord sheath and patterning of nuclei pulposi within the intervertebral discs

PubMed Central

Choi, Kyung-Suk; Harfe, Brian D.

2011-01-01

The vertebrae notochord is a transient rod-like structure that produces secreted factors that are responsible for patterning surrounding tissues. During later mouse embryogenesis, the notochord gives rise to the middle part of the intervertebral disc, called the nucleus pulposus. Currently, very little is known about the molecular mechanisms responsible for forming the intervertebral discs. Here we demonstrate that hedgehog signaling is required for formation of the intervertebral discs. Removal of hedgehog signaling in the notochord and nearby floorplate resulted in the formation of an aberrant notochord sheath that normally surrounds this structure. In the absence of the notochord sheath, small nuclei pulposi were formed, with most notochord cells dispersed throughout the vertebral bodies during embryogenesis. Our data suggest that the formation of the notochord sheath requires hedgehog signaling and that the sheath is essential for maintaining the rod-like structure of the notochord during early embryonic development. As notochord cells form nuclei pulposi, we propose that the notochord sheath functions as a “wrapper” around the notochord to constrain these cells along the vertebral column. PMID:21606373

Hedgehog signaling is required for formation of the notochord sheath and patterning of nuclei pulposi within the intervertebral discs.

PubMed

Choi, Kyung-Suk; Harfe, Brian D

2011-06-07

The vertebrae notochord is a transient rod-like structure that produces secreted factors that are responsible for patterning surrounding tissues. During later mouse embryogenesis, the notochord gives rise to the middle part of the intervertebral disc, called the nucleus pulposus. Currently, very little is known about the molecular mechanisms responsible for forming the intervertebral discs. Here we demonstrate that hedgehog signaling is required for formation of the intervertebral discs. Removal of hedgehog signaling in the notochord and nearby floorplate resulted in the formation of an aberrant notochord sheath that normally surrounds this structure. In the absence of the notochord sheath, small nuclei pulposi were formed, with most notochord cells dispersed throughout the vertebral bodies during embryogenesis. Our data suggest that the formation of the notochord sheath requires hedgehog signaling and that the sheath is essential for maintaining the rod-like structure of the notochord during early embryonic development. As notochord cells form nuclei pulposi, we propose that the notochord sheath functions as a "wrapper" around the notochord to constrain these cells along the vertebral column.

The components of mid- and far-infrared emission from S0 and early-type shell galaxies

NASA Technical Reports Server (NTRS)

Thronson, Harley A., Jr.; Bally, John; Hacking, Perry

1989-01-01

The IRAS database has been used to study detections of about 150 early-type elliptical and S0 galaxies exhibiting a shell structure. No strong evidence for the expected enhancement of either star formation rates or heating of the interstellar medium is found. It is suggested that for some of the sample galaxies either a contribution from warm dust surrounding evolved stars or emission from an active nucleus may be significant.

The formation of topological defects in phase transitions

NASA Technical Reports Server (NTRS)

Hodges, Hardy M.

1989-01-01

It was argued, and fought through numerical work that the results of non-dynamical Monte Carlo computer simulations cannot be applied to describe the formation of topological defects when the correlation length at the Ginzburg temperature is significantly smaller than the horizon size. To test the current hypothesis that infinite strings at formation are essentially described by Brownian walks of size the correlation length at the Ginzburg temperature, fields at the Ginzburg temperature were equilibrated. Infinite structure do not exist in equilibrium for reasonable definitions of the Ginzburg temperature, and horizons must be included in a proper treatment. A phase transition, from small-scale to large-scale string or domain wall structure, is found to occur very close to the Ginzburg temperature, in agreement with recent work. The formation process of domain walls and global strings were investigated through the breaking of initially ordered states. To mimic conditions in the early Universe, cooling times are chosen so that horizons exist in the sample volume when topological structure formation occurs. The classical fields are evolved in real-time by the numerical solution of Langevin equations of motion on a three dimensional spatial lattice. The results indicate that it is possible for most of the string energy to be in small loops, rather than in long strings, at formation.

Topographic inversion of early interdune deposits, Navajo Sandstone (Lower Jurassic), Colorado Plateau, USA

NASA Astrophysics Data System (ADS)

Bromley, Michael

1992-09-01

Outliers of Navajo Sandstone (Lower Jurassic Glen Canyon Group) form low paleohills east of the main body of the Formation in the Salt Anticline region of southwestern Colorado. The paleohills consist of interdune deposits which developed topographic inversion during erosion of the Jurassic J-2 unconformity owing to a tough shell of early cemented sandstones and cherty limestones. The interdune deposits accumulated over playa mudstones of the Kayenta Formation which formed in a structural low between the Uncompahgre Uplift and the Paradox Valley salt anticline. Open-framework textures indicate the early formation of quartz or chert cement in sandstone beds immediately above the impermeable playa mudstones. The mudstones enhanced the subsequent formation of wet interdune deposits keeping groundwater near the surface. Microcrystalline quartz cements and fresh feldspars suggest that groundwater was alkaline. A source of alkalinity may have been eolian dust carried from emergent Pennsylvanian evaporite intrusions upwind of the playa deposits. The high specific surface of siliceous and evaporite dusts combined with shallow groundwater and high evaporation rates resulted in the rapid formation of quartzitic silcrete crusts above the playa mudstone aquacludes. As these early silcretes were buried, the impermeable mudstone foundations beneath them continued to serve as aquacludes. The inclined potentiometric surface of perched water tables above the isolated aquacludes intersected the land surface at progressively higher levels as the mudstone lenses were buried. Groundwater moving laterally from above the aquacludes carried dissolved material towards the inclined water tables at their margins. This mobilized material was redeposited as early cement where the capillary fringe intersected the land surface. As the land surface aggraded vertically, the zone of cement formation migrated laterally in response of a change of the relative positions of the land surface and an inclined perched water table. The final products of this process were topographic remnants of Navajo Sandstone with a resistant rind of cemented material enclosing a core of leached, compacted and friable sandstones. Erosion of the J-2 unconformity left the cemented rind in relief while removing all material around it. The resulting hills survived the onlap of the Middle Jurassic Entrada Formation, leaving considerable relief beneath the unconformity.

ISSOL Meeting, Barcelona, Spain, 1993

NASA Technical Reports Server (NTRS)

Ferris, James P. (Editor)

1995-01-01

Topics in a conference on the origins of life and the evolution of the biosphere include the origin of chirality, prebiotic chemistry of small biomolecules, primitive polymer formation, RNA regulation and control. Early origins of life and the ecology of hydrothermal systems such as ocean floor vents and their simple organisms are examined. The process of mineral catalysis in Montmorillonite as a model for early metabolism is used. The origin of the genetic code and the development of branching in molecular structures of amino acids is described. Studies are reported of the effects of meteorite impact on early Earth life.

GASP. VIII. Capturing the Birth of a Tidal Dwarf Galaxy in a Merging System at z ˜ 0.05

NASA Astrophysics Data System (ADS)

Vulcani, Benedetta; Moretti, Alessia; Poggianti, Bianca M.; Fasano, Giovanni; Fritz, Jacopo; Gullieuszik, Marco; Duc, Pierre-Alain; Jaffé, Yara; Bettoni, Daniela

2017-12-01

Within the GAs Stripping Phenomena in galaxies with MUSE (GASP) sample, we identified an ongoing 1:1 merger between 2 galaxies and the consequent formation of a tidal dwarf galaxy (TDG). The system is observed at z = 0.05043 and is part of a poor group. Exploiting the exquisite quality of the Multi Unit Spectroscopic Explorer (MUSE)/Very Large Telescope data, we present the spatially resolved kinematics and physical properties of gas and stars of this object and describe its evolutionary history. An old (luminosity weighted age ˜2 × 109 yr), gas-poor, early-type-like galaxy is merging with a younger (luminosity weighted age ˜2.5 × 108 yr), gas-rich, late-type galaxy. The system has a quite strong metallicity gradient, which is indicative of an early-stage phase. Comparing the spatial extension of the star formation at different epochs, we date the beginning of the merger between 2 × 107 yr < t < 5.7 × 108 yr ago. The gas kinematic pattern reflects that of the late-type object and is distorted in correspondence to the location of the impact. The stellar kinematic instead is more chaotic, as expected for mergers. The gas redistribution in the system induces high levels of star formation between the two components, where we indeed detect the birth of the TDG. This stellar structure has a mass of ˜6 × 109 M ⊙, a radius of ˜2 kpc, and even though it has already accreted large quantities of gas and stars, it is still located within the disk of the progenitor, is characterized by a high velocity dispersion, indicating that it is still forming, is dusty, and has high levels of star formation (star formation rate ˜ 0.3 M ⊙ yr-1). This TDG is originated in an early-stage merger, while these structures usually form in more evolved systems.

Defining the Pathophysiological Role of Tau in Experimental TBI

DTIC Science & Technology

2016-10-01

in AD. This pathway is a major source for excitatory innervation of hippocampus , a structure vital for memory formation. Damage to the EC or...hippocampal input pathway that is both preferentially vulnerable in early-stage AD and critically important for long-term memory . The model confines...structure and function of the hippocampus after single or repetitive mild TBI, and whether mild TBI exacerbates ongoing tauopathy to promote a chronic

ESTEST: A Framework for the Verification and Validation of Electronic Structure Codes

NASA Astrophysics Data System (ADS)

Yuan, Gary; Gygi, Francois

2011-03-01

ESTEST is a verification and validation (V& V) framework for electronic structure codes that supports Qbox, Quantum Espresso, ABINIT, the Exciting Code and plans support for many more. We discuss various approaches to the electronic structure V& V problem implemented in ESTEST, that are related to parsing, formats, data management, search, comparison and analyses. Additionally, an early experiment in the distribution of V& V ESTEST servers among the electronic structure community will be presented. Supported by NSF-OCI 0749217 and DOE FC02-06ER25777.

Visualization and identification of the structures formed during early stages of fibrin polymerization

PubMed Central

Chernysh, Irina N.; Nagaswami, Chandrasekaran

2011-01-01

We determined the sequence of events and identified and quantitatively characterized the mobility of moving structures present during the early stages of fibrin-clot formation from the beginning of polymerization to the gel point. Three complementary techniques were used in parallel: spinning-disk confocal microscopy, transmission electron microscopy, and turbidity measurements. At the beginning of polymerization the major structures were monomers, whereas at the middle of the lag period there were monomers, oligomers, protofibrils (defined as structures that consisted of more than 8 monomers), and fibers. At the end of the lag period, there were primarily monomers and fibers, giving way to mainly fibers at the gel point. Diffusion rates were calculated from 2 different results, one based on sizes and another on the velocity of the observed structures, with similar results in the range of 3.8-0.1 μm2/s. At the gel point, the diffusion coefficients corresponded to very large, slow-moving structures and individual protofibrils. The smallest moving structures visible by confocal microscopy during fibrin polymerization were identified as protofibrils with a length of approximately 0.5 μm. The sequence of early events of clotting and the structures present are important for understanding hemostasis and thrombosis. PMID:21248064

The fine structure of human germ layers in vivo: clues to the early differentiation of embryonic stem cells in vitro.

PubMed

Sathananthan, Henry; Selvaraj, Kamala; Clark, Joan

2011-08-01

The fine structure of the three germ layers in human ectopic embryos (stage 7) have been documented by digital light and electron microscopy. The formation of ectoderm, endoderm and mesoderm and notochordal cells, and also the extraembryonic membranes, amnion and yolk sac, are imaged. The germ layers give rise to all the cells and tissues of the human body. Possible clues to the early differentiation of embryonic stem cells (ESC) in vitro were obtained, since these events are more or less mimicked in cultures of ESC derived from the inner cell mass of human blastocysts. The findings are discussed with reference to previous studies on the fine structure of ESC using the same technique. Copyright © 2011. Published by Elsevier Ltd.

Surface geology of the Jeptha Knob cryptoexplosion structure, Shelby County, Kentucky

USGS Publications Warehouse

Cressman, Earle Rupert

1981-01-01

The Jeptha Knob crytoexplosion structure, described by Bucher in 1925, was remapped in 1973 as part of the U.S. Geological Survey and the Kentucky Geological Survey cooperative mapping program. The knob is in the western part of the Blue Grass region. Hilltops in the rolling farmland adjacent to the knob are underlain by the nearly flat-lying Grant Lake and Callaway Creek Limestones of middle Late Ordovician age, and the valleys are cut in interbedded limestone and shale of the Clays Ferry Formation of late Middle and early Late Ordovician age. Precambrian basement is estimated to be 4,000 ft below the surface. The mapped area is 50 miles west of the crest of the Cincinnati arch; the regional dip is westward 16 ft per mile. The 38th parallel lineament is 50 miles to the south. The structure, about 14,000 ft in diameter, consists of a central area 6,300 ft in diameter of uplifted Clays Ferry Formation surrounded by a belt of annular faults that are divided into segments by radial faults. The grass structure of the Clays Ferry Formation is that of a broad dame, but same evidence indicates that, in detail, the beds are complexly folded. The limestone of the Clays Ferry is brecciated and infiltrated by limonite. The brecciation is confined to single beds, and there is no mixing of fragments from different beds. A small plug of the Logana Member of the Lexington Limestone (Middle Ordovician) has been upfaulted at least 700 ft and emplaced within the Clays Ferry. The central uplift is separated by high-angle and, in places, reverse faults from the belt of annular faulting. The concentric faults in the zone of annular faults are extensional, and the general aspect is of collapse and inward movement. Lenses of breccia are present along many of the concentric faults, but not along the radial faults. At least same of the breccia was injected from below. The youngest beds involved in the faulting are in the Bardstown Member of the Drakes Formation of late Late Ordovician age. The faulted and brecciated beds are overlain by nearly horizontal dolomite and shale of Early and Middle Silurian age. The basal 5 ft of the oldest Silurian unit, the Brassfield Formation, contains calcarenite and calcirudite composed, in large part, of locally derived fragments from the Upper Ordovician formations. The Jeptha Knob structure was formed in latest Late Ordovician or earliest Early Silurian time. At the time of formation, the area was either very slightly above or very slightly below sea level; the sediments were already largely indurated. At the onset of Silurian deposition, the area of the central uplift was probably a broad shallow depression not more than about 15 ft deep, possibly surrounded by a rim of Upper Ordovician rocks or rock fragments. The origin of the Jeptha Knob structure cannot be determined from the available data. Shatter cones and coesite, considered by many to be definitive criteria far origin by impact, have not been found. On the other hand, geophysical studies indicate that there is no coincident uplift of the basement, and there is no certain relation of Jeptha Knob to any obvious structural trend.

The Crystal Structure of the Drosophila Germline Inducer Oskar Identifies Two Domains with Distinct Vasa Helicase- and RNA-Binding Activities.

PubMed

Jeske, Mandy; Bordi, Matteo; Glatt, Sebastian; Müller, Sandra; Rybin, Vladimir; Müller, Christoph W; Ephrussi, Anne

2015-07-28

In many animals, the germ plasm segregates germline from soma during early development. Oskar protein is known for its ability to induce germ plasm formation and germ cells in Drosophila. However, the molecular basis of germ plasm formation remains unclear. Here, we show that Oskar is an RNA-binding protein in vivo, crosslinking to nanos, polar granule component, and germ cell-less mRNAs, each of which has a role in germline formation. Furthermore, we present high-resolution crystal structures of the two Oskar domains. RNA-binding maps in vitro to the C-terminal domain, which shows structural similarity to SGNH hydrolases. The highly conserved N-terminal LOTUS domain forms dimers and mediates Oskar interaction with the germline-specific RNA helicase Vasa in vitro. Our findings suggest a dual function of Oskar in RNA and Vasa binding, providing molecular clues to its germ plasm function. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Phase, composition, and growth mechanism for secondary organic aerosol from the ozonolysis of α-cedrene

NASA Astrophysics Data System (ADS)

Zhao, Yue; Wingen, Lisa M.; Perraud, Véronique; Finlayson-Pitts, Barbara J.

2016-03-01

Sesquiterpenes are an important class of biogenic volatile organic compounds (BVOCs) and have a high secondary organic aerosol (SOA) forming potential. However, SOA formation from sesquiterpene oxidation has received less attention compared to other BVOCs such as monoterpenes, and the underlying mechanisms remain poorly understood. In this work, we present a comprehensive experimental investigation of the ozonolysis of α-cedrene both in a glass flow reactor (27-44 s reaction times) and in static Teflon chambers (30-60 min reaction times). The SOA was collected by impaction or filters, followed by analysis using attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy and electrospray ionization mass spectrometry (ESI-MS), or measured online using direct analysis in real-time mass spectrometry (DART-MS) and aerosol mass spectrometry (AMS). The slow evaporation of 2-ethylhexyl nitrate that was incorporated into the SOA during its formation and growth gives an estimated diffusion coefficient of 3 × 10-15 cm2 s-1 and shows that SOA is a highly viscous semisolid. Possible structures of four newly observed low molecular weight (MW ≤ 300 Da) reaction products with higher oxygen content than those previously reported were identified. High molecular weight (HMW) products formed in the early stages of the oxidation have structures consistent with aldol condensation products, peroxyhemiacetals, and esters. The size-dependent distributions of HMW products in the SOA, as well as the effects of stabilized Criegee intermediate (SCI) scavengers on HMW products and particle formation, confirm that HMW products and reactions of SCI play a crucial role in early stages of particle formation. Our studies provide new insights into mechanisms of SOA formation and growth in α-cedrene ozonolysis and the important role of sesquiterpenes in new particle formation as suggested by field measurements.

Phase, composition and growth mechanism for secondary organic aerosol from the ozonolysis of α-cedrene

NASA Astrophysics Data System (ADS)

Zhao, Y.; Wingen, L. M.; Perraud, V.; Finlayson-Pitts, B. J.

2015-12-01

Sesquiterpenes are an important class of biogenic volatile organic compounds (BVOCs) and have a high secondary organic aerosol (SOA) forming potential. However, SOA formation from sesquiterpene oxidation has received less attention compared to other BVOCs such as monoterpenes, and the underlying mechanisms remain poorly understood. In this work, we present a comprehensive experimental investigation of the ozonolysis of α-cedrene both in a glass flow reactor (27-44 s reaction times) and in static Teflon chambers (30-60 min reaction times). The SOA was collected by impaction or filters, followed by analysis using attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR) and electrospray ionization mass spectrometry (ESI-MS), or measured on line using direct analysis in real time (DART-MS) and aerosol mass spectrometry (AMS). The slow evaporation of 2-ethylhexyl nitrate that was incorporated into the SOA during its formation and growth gives an estimated diffusion coefficient of 3 × 10-15 cm2 s-1 and shows that SOA is a highly viscous semi-solid. Possible structures of four newly observed low molecular weight (MW ≤ 300 Da) reaction products with higher oxygen content than those previously reported were identified. High molecular weight (HMW) products formed in the early stages of the oxidation have structures consistent with aldol condensation products, peroxyhemiacetals, and esters. The size-dependent distributions of HMW products in the SOA, as well as the effects of stabilized Criegee intermediate (SCI) scavengers on HMW products and particle formation, confirm that HMW products and reactions of Criegee intermediates play a crucial role in early stages of particle formation. Our studies provide new insights into mechanisms of SOA formation and growth in α-cedrene ozonolysis and the important role of sesquiterpenes in new particle formation as suggested by field measurements.

Understanding and Addressing the Achievement Gap through Individualized Instruction and Formative Assessment

ERIC Educational Resources Information Center

Yeh, Stuart S.

2010-01-01

This article synthesizes findings regarding the development of competence and learned helplessness and factors influencing persistence and intrinsic motivation, suggests the process through which small differences in early achievement are magnified by the current structure of schools, and reviews evidence suggesting that the characteristics of a…

Searching for Life on Early Mars: Lessons from the Pilbara

NASA Technical Reports Server (NTRS)

Clarke, J. D. A.; Stoker, C. R.

2016-01-01

Stromatolites in the Pilbara region of Western Australia constitute the earliest outcrop-scale evidence of life on Earth (Figure 1). The stromatolites in the 3.4 Ga Strelley Pool Formation (SPF) provide an important analog for searching for fossil evidence of early life on Mars, as Noachian aged sediments on Mars were formed under similar environmental conditions. Stromatolites represent possibly the best evidence that could be collected by a rover because they form recognizable macroscopic structures and are often associated with chemical and microscopic evidence.

Gas clump formation via thermal instability in high-redshift dwarf galaxy mergers

NASA Astrophysics Data System (ADS)

Arata, Shohei; Yajima, Hidenobu; Nagamine, Kentaro

2018-04-01

Star formation in high-redshift dwarf galaxies is a key to understand early galaxy evolution in the early Universe. Using the three-dimensional hydrodynamics code GIZMO, we study the formation mechanism of cold, high-density gas clouds in interacting dwarf galaxies with halo masses of ˜3 × 107 M⊙, which are likely to be the formation sites of early star clusters. Our simulations can resolve both the structure of interstellar medium on small scales of ≲ 0.1 pc and the galactic disc simultaneously. We find that the cold gas clouds form in the post-shock region via thermal instability due to metal-line cooling, when the cooling time is shorter than the galactic dynamical time. The mass function of cold clouds shows almost a power-law initially with an upper limit of thermally unstable scale. We find that some clouds merge into more massive ones with ≳104 M⊙ within ˜ 2 Myr. Only the massive cold clouds with ≳ 103 M⊙ can keep collapsing due to gravitational instability, resulting in the formation of star clusters. We find that the clump formation is more efficient in the prograde-prograde merger than the prograde-retrograde case due to the difference in the degree of shear flow. In addition, we investigate the dependence of cloud mass function on metallicity and H2 abundance, and show that the cases with low metallicities (≲10-2 Z⊙) or high H2 abundance (≳10-3) cannot form massive cold clouds with ≳103 M⊙.

Predicted Errors In Children's Early Sentence Comprehension

PubMed Central

Gertner, Yael; Fisher, Cynthia

2012-01-01

Children use syntax to interpret sentences and learn verbs; this is syntactic bootstrapping. The structure-mapping account of early syntactic bootstrapping proposes that a partial representation of sentence structure, the set of nouns occurring with the verb, guides initial interpretation and provides an abstract format for new learning. This account predicts early successes, but also telltale errors: Toddlers should be unable to tell transitive sentences from other sentences containing two nouns. In testing this prediction, we capitalized on evidence that 21-month-olds use what they have learned about noun order in English sentences to understand new transitive verbs. In two experiments, 21-month-olds applied this noun-order knowledge to two-noun intransitive sentences, mistakenly assigning different interpretations to “The boy and the girl are gorping!” and “The girl and the boy are gorping!”. This suggests that toddlers exploit partial representations of sentence structure to guide sentence interpretation; these sparse representations are useful, but error-prone. PMID:22525312

A photoionization instability in the early intergalactic medium

NASA Technical Reports Server (NTRS)

Hogan, Craig J.

1992-01-01

It is argued that any fairly uniform source of ionizing photons can be the cause of an instability in the pregalactic medium on scales larger than a photon path length. Underdense regions receive more ionizing energy per atom and reach higher temperature and entropy, driving the density down still further. Fluctuations created by this instability can lead to the formation of structures resembling protogalaxies and intergalactic clouds, obviating the need for gas clouds or density perturbations of earlier cosmological provenance, as is usually assumed in theories of galaxy and structure formation. Characteristic masses for clouds produced by the instability, with log mass in solar units plotted against log radius in kpc, are illustrated.

Tectonic and regional metamorphic implications of the discovery of Middle Ordovician conodonts in cover rocks east of the Green Mountain massif, Vermont

USGS Publications Warehouse

Ratcliffe, N.M.; Harris, A.G.; Walsh, G.J.

1999-01-01

Middle Ordovician (late Arenigian - early Caradocian) conodonts were recovered from a dolostone lens in carbonaceous schist 30 m below the base of the Pinney Hollow Formation in the Eastern Cover sequence near West Bridgewater, Vermont. These are the first reported fossils from the metamorphic cover sequence rocks east of the Green Mountain, Berkshire, and Housatonic massifs of western New England. The conodonts are recrystallized, coated with graphitic matter, thermally altered to a color alteration index (CAI) of at least 5, and tectonically deformed. The faunule is nearly monospecific, consisting of abundant Periodon aculeatus Hadding? and rare Protopanderodus. The preponderance of Periodon and the absence of warm, shallow-water species characteristic of the North American Midcontinent Conodont Province suggest a slope or basin depositional setting. The conodont-bearing carbonaceous schist is traceable 3 km southeast to the Plymouth area, where it had been designated the uppermost member of the Plymouth Formation, previously regarded as Early Cambrian in age. The age and structural position of the carbonaceous schist above dolostones of the Plymouth Formation but below the Pinney Hollow Formation (upper Proterozoic and Lower Cambrian?) suggest that this unit may be correlative or time transgressive with the Ira Formation, which underlies the Taconic allochthons in the Vermont Valley. Such a correlation supports the concept of placing the western limit of the root zone of the Taconic allochthons beneath the Pinney Hollow Formation. An approximate absolute age assignment for the conodont-bearing rock is between 470 and 454 Ma. This suggests that dynamothermal metamorphism during the Taconian orogeny on the east flank of the Green Mountains was younger than early Caradocian, which is in accord with the middle Caradocian age of the Ira Formation west of the Green Mountain massif.

Self-assembling iron oxyhydroxide/oxide tubular structures: laboratory-grown and field examples from Rio Tinto.

PubMed

Barge, Laura M; Cardoso, Silvana S S; Cartwright, Julyan H E; Doloboff, Ivria J; Flores, Erika; Macías-Sánchez, Elena; Sainz-Díaz, C Ignacio; Sobrón, Pablo

2016-11-01

Rio Tinto in southern Spain has become of increasing astrobiological significance, in particular for its similarity to environments on early Mars. We present evidence of tubular structures from sampled terraces in the stream bed at the source of the river, as well as ancient, now dry, terraces. This is the first reported finding of tubular structures in this particular environment. We propose that some of these structures could be formed through self-assembly via an abiotic mechanism involving templated precipitation around a fluid jet, a similar mechanism to that commonly found in so-called chemical gardens. Laboratory experiments simulating the formation of self-assembling iron oxyhydroxide tubes via chemical garden/chemobrionic processes form similar structures. Fluid-mechanical scaling analysis demonstrates that the proposed mechanism is plausible. Although the formation of tube structures is not itself a biosignature, the iron mineral oxidation gradients across the tube walls in laboratory and field examples may yield information about energy gradients and potentially habitable environments.

Self-assembling iron oxyhydroxide/oxide tubular structures: laboratory-grown and field examples from Rio Tinto

PubMed Central

Barge, Laura M.; Doloboff, Ivria J.; Flores, Erika; Sobrón, Pablo

2016-01-01

Rio Tinto in southern Spain has become of increasing astrobiological significance, in particular for its similarity to environments on early Mars. We present evidence of tubular structures from sampled terraces in the stream bed at the source of the river, as well as ancient, now dry, terraces. This is the first reported finding of tubular structures in this particular environment. We propose that some of these structures could be formed through self-assembly via an abiotic mechanism involving templated precipitation around a fluid jet, a similar mechanism to that commonly found in so-called chemical gardens. Laboratory experiments simulating the formation of self-assembling iron oxyhydroxide tubes via chemical garden/chemobrionic processes form similar structures. Fluid-mechanical scaling analysis demonstrates that the proposed mechanism is plausible. Although the formation of tube structures is not itself a biosignature, the iron mineral oxidation gradients across the tube walls in laboratory and field examples may yield information about energy gradients and potentially habitable environments. PMID:27956875

Stratigraphy and structural setting of Upper Cretaceous Frontier Formation, western Centennial Mountains, southwestern Montana and southeastern Idaho

USGS Publications Warehouse

Dyman, T.S.; Tysdal, R.G.; Perry, W.J.; Nichols, D.J.; Obradovich, J.D.

2008-01-01

Stratigraphic, sedimentologic, and palynologic data were used to correlate the Frontier Formation of the western Centennial Mountains with time-equivalent rocks in the Lima Peaks area and other nearby areas in southwestern Montana. The stratigraphic interval studied is in the middle and upper parts (but not uppermost) of the formation based on a comparison of sandstone petrography, palynologic age data, and our interpretation of the structure using a seismic line along the frontal zone of the Centennial Mountains and the adjacent Centennial Valley. The Frontier Formation is comprised of sandstone, siltstone, mudstone, limestone, and silty shale in fluvial and coastal depositional settings. A distinctive characteristic of these strata in the western Centennial Mountains is the absence of conglomerate and conglomeratic sandstone beds. Absence of conglomerate beds may be due to lateral facies changes associated with fluvial systems, a distal fining of grain size, and the absence of both uppermost and lower Frontier rocks in the study area. Palynostratigraphic data indicate a Coniacian age for the Frontier Formation in the western Centennial Mountains. These data are supported by a geochronologic age from the middle part of the Frontier at Lima Peaks indicating a possible late Coniacian-early Santonian age (86.25 ?? 0.38 Ma) for the middle Frontier there. The Frontier Formation in the western Centennial Mountains is comparable in age and thickness to part of the Frontier at Lima Peaks. These rocks represent one of the thickest known sequences of Frontier strata in the Rocky Mountain region. Deposition was from about 95 to 86 Ma (middle Cenomanian to at least early Santonian), during which time, shoreface sandstone of the Telegraph Creek Formation and marine shale of the Cody Shale were deposited to the east in the area now occupied by the Madison Range in southwestern Montana. Frontier strata in the western Centennial Mountains are structurally isolated from other Cretaceous rocks in the region and are part of the Lima thrust sheet that lies at the leading edge of the Sevier-style overthrusting in this part of southwestern Montana and adjacent southeastern Idaho.

Lacustrine fan delta deposition alongside intrabasinal structural highs in rift basins: an example from the Early Cretaceous Jiuquan Basin, Northwestern China

NASA Astrophysics Data System (ADS)

Zhang, Chengcheng; Muirhead, James D.; Wang, Hua; Chen, Si; Liao, Yuantao; Lu, Zongsheng; Wei, Jun

2018-01-01

Development of fan deltas alongside intrabasinal structural highs has been overlooked compared to those forming on basin margins. However, these fan deltas may provide important clues regarding the tectonic and climatic controls on deposition during rift development. This paper documents fan delta deposition alongside an intrabasinal structural high within the Early Cretaceous Xiagou Formation of the Jiuquan Basin, China, using subsurface geological and geophysical data. Deposits observed in drill core support fan delta deposition occurring almost exclusively through subaerial and subaqueous gravity flows. Subsurface mapping reveals a consistent decrease in the areal extent of fan deltas from lowstand to highstand system tracts, suggesting that deposition alongside the structural high is sensitive to lake-level changes. The temporal and spatial distribution of the fan deltas display retrogradational stacking patterns, where fan deltas exhibit a decreasing lateral extent up-sequence until fan delta deposition terminated and was replaced by deposition of fine-grained lacustrine deposits. The retrogradational stacking patterns observed alongside the intrabasinal structural high are not observed in fan deltas along the basin margin in the lower parts of the Xiagou Formation. Subsidence profiles also show differential subsidence across the basin during the earliest stages of this formation, likely resulting from border fault movements. These data suggest that non-uniform stacking patterns in the lower parts of the Xiagou Formation reflect basin-scale tectonic movements as the dominant control on synrift deposition patterns. However, later stages of Xiagou Formation deposition were characterized by uniform subsidence across the basin, and uniform retrogradational stacking patterns for fan deltas alongside the intrabasinal structural high and border fault. These observations suggest that basin-scale tectonic movements played a relatively limited role in controlling sediment deposition, and imply a potential change to regional-scale processes affecting fan delta deposition during later synrift stages. Climate change is favored here as the region-scale control on the uniform retrogradational fan delta stacking patterns. This assertion is supported by pollen assemblages, isotope signatures, and organic geochemical analyses, which collectively suggest a change from a humid to semi-arid environment during later synrift stages. We suggest that variations in stacking patterns between different fan delta systems can provide insights into the basin- and regional-scale processes that control rift basin deposition.

Anthranilate deteriorates the structure of Pseudomonas aeruginosa biofilms and antagonizes the biofilm-enhancing indole effect.

PubMed

Kim, Soo-Kyoung; Park, Ha-Young; Lee, Joon-Hee

2015-04-01

Anthranilate and indole are alternative degradation products of tryptophan, depending on the bacterial species. While indole enhances the biofilm formation of Pseudomonas aeruginosa, we found that anthranilate, the tryptophan degradation product of P. aeruginosa, had an opposite effect on P. aeruginosa biofilm formation, in which anthranilate deteriorated the mushroom structure of biofilm. The anthranilate effect on biofilm formation was differentially exerted depending on the developmental stage and the presence of shear force. Anthranilate slightly accelerated the initial attachment of P. aeruginosa at the early stage of biofilm development and appeared to build more biofilm without shear force. But anthranilate weakened the biofilm structure in the late stage, deteriorating the mushroom structure of biofilms with shear force to make a flat biofilm. To investigate the interplay of anthranilate with indole in biofilm formation, biofilms were cotreated with anthranilate and indole, and the results showed that anthranilate antagonized the biofilm-enhancing effect of indole. Anthranilate was able to deteriorate the preformed biofilm. The effect of anthranilate and indole on biofilm formation was quorum sensing independent. AntR, a regulator of anthranilate-degrading metabolism was synergistically activated by cotreatment with anthranilate and indole, suggesting that indole might enhance biofilm formation by facilitating the degradation of anthranilate. Anthranilate slightly but significantly affected the cyclic diguaniylate (c-di-GMP) level and transcription of major extracellular polysaccharide (Psl, Pel, and alginate) operons. These results suggest that anthranilate may be a promising antibiofilm agent and antagonize the effect of indole on P. aeruginosa biofilm formation. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

In Situ Raman Detection of Gas Hydrates Exposed on the Seafloor of the South China Sea

NASA Astrophysics Data System (ADS)

Zhang, Xin; Du, Zengfeng; Luan, Zhendong; Wang, Xiujuan; Xi, Shichuan; Wang, Bing; Li, Lianfu; Lian, Chao; Yan, Jun

2017-10-01

Gas hydrates are usually buried in sediments. Here we report the first discovery of gas hydrates exposed on the seafloor of the South China Sea. The in situ chemical compositions and cage structures of these hydrates were measured at the depth of 1,130 m below sea level using a Raman insertion probe (RiP-Gh) that was carried and controlled by a remotely operated vehicle (ROV) Faxian. This in situ analytical technique can avoid the physical and chemical changes associated with the transport of samples from the deep sea to the surface. Natural gas hydrate samples were analyzed at two sites. The in situ spectra suggest that the newly formed hydrate was Structure I but contains a small amount of C3H8 and H2S. Pure gas spectra of CH4, C3H8, and H2S were also observed at the SCS-SGH02 site. These data represent the first in situ proof that free gas can be trapped within the hydrate fabric during rapid hydrate formation. We provide the first in situ confirmation of the hydrate growth model for the early stages of formation of crystalline hydrates in a methane-rich seafloor environment. Our work demonstrates that natural hydrate deposits, particularly those in the early stages of formation, are not monolithic single structures but instead exhibit significant small-scale heterogeneities due to inclusions of free gas and the surrounding seawater, there inclusions also serve as indicators of the likely hydrate formation mechanism. These data also reinforce the importance of correlating visual and in situ measurements when characterizing a sampling site.

Photoinduced manipulation of the molecular assembly in heteroleptic titanium metal alkoxides for use in optical devices

NASA Astrophysics Data System (ADS)

Schneider, Zachary Vernon

The manipulation of molecular structures is an important enabling technology for future advances in nanotechnology. The ability to control the synthesis of nanostructured materials, such as the bond formation and geometry of a molecule is of great significance to nanoscience as nanosystems are constructed from these smaller units. Influencing the assembly of molecular structures at the early stages of material formation can modify the ensuing molecular aggregate structure with the potential for impact in a broad range of optical, chemical, and biological applications. Heteroleptic titanium metal alkoxides (OPy)2Ti(4MP)2 and (OPy)2Ti(TAP)2, where OPy = OC6H 6N, 4MP = OC6H4(SH)-4, and TAP = OC6H 2(CH2N(CH3)2)3-2,4,6 were investigated as precursors for thin film and solution-based synthesis of oxide materials via the photoactivation of intermolecular reactions (e.g. hydrolysis/condensation) at selected ligand sites about the metal center. Manipulation of the molecular structure of these photosensitive metal alkoxides was achieved through the use of optical irradiation parameters, such as the tuning of the excitation wavelength, total optical fluence, and pulse energy intensity. Irradiating these metal alkoxides with UV-light was seen to cause photodisruption in the ligand groups leading to the formation of Ti-O-Ti linking via hydrolysis and condensation reactions. In spin-coated (OPy)2Ti(TAP)2 films, these photoinduced bridge bond formations resulted in an increase in refractive index and film densification as well as produced an insoluble film when rinsed in pyridine. By making use of these photoinduced film properties, the formation of physical relief structures from spin-coated (OPy)2Ti(TAP) 2 films was demonstrated along with the ability to photopattern sub-micron and nanometer features. In addition, the micro- and nanostructure of thin films were optically manipulated through several deposition methods; a novel dip-coated in-situ photodeposition technique was utilized by illuminating at specific distances above the meniscus to further control the early stages of material formation due to changes in the mobility of the reactants from the evaporation and gravitational draining of the solvent. The ability to manipulate molecular development at the on-set of material formation through different deposition techniques and optical parameters allowed for the creation of several thin film optical devices, such as gratings, micro-optic lenslet arrays, and binary "on-off" patterned devices.

Dynamic Folding Pathway Models of the Trp-Cage Protein

PubMed Central

Kim, Seung-Yeon

2013-01-01

Using action-derived molecular dynamics (ADMD), we study the dynamic folding pathway models of the Trp-cage protein by providing its sequential conformational changes from its initial disordered structure to the final native structure at atomic details. We find that the numbers of native contacts and native hydrogen bonds are highly correlated, implying that the native structure of Trp-cage is achieved through the concurrent formations of native contacts and native hydrogen bonds. In early stage, an unfolded state appears with partially formed native contacts (~40%) and native hydrogen bonds (~30%). Afterward, the folding is initiated by the contact of the side chain of Tyr3 with that of Trp6, together with the formation of the N-terminal α-helix. Then, the C-terminal polyproline structure docks onto the Trp6 and Tyr3 rings, resulting in the formations of the hydrophobic core of Trp-cage and its near-native state. Finally, the slow adjustment processes of the near-native states into the native structure are dominant in later stage. The ADMD results are in agreement with those of the experimental folding studies on Trp-cage and consistent with most of other computational studies. PMID:23865078

The Universe's Most Extreme Star-forming Galaxies

NASA Astrophysics Data System (ADS)

Casey, Caitlin

2017-06-01

Dusty star-forming galaxies host the most intense stellar nurseries in the Universe. Their unusual characteristics (SFRs=200-2000Msun/yr, Mstar>1010 Msun) pose a unique challenge for cosmological simulations and galaxy formation theory, particularly at early times. Although rare today, they were factors of 1000 times more prevalent at z~2-5, contributing significantly to the buildup of the Universe's stellar mass and the formation of high-mass galaxies. At even earlier times (within 1Gyr post Big Bang) they could have played a pivotal role in enriching the IGM. However, an ongoing debate lingers as to their evolutionary origins at high-redshift, whether or not they are triggered by major mergers of gas-rich disk galaxies, or if they are solitary galaxies continually fed pristine gas from the intergalactic medium. Furthermore, their presence in early protoclusters, only revealed quite recently, pose intriguing questions regarding the collapse of large scale structure. I will discuss some of the latest observational programs dedicated to understanding dust-obscuration in and gas content of the early Universe, their context in the cosmic web, and future long-term observing campaigns that may reveal their relationship to `normal’ galaxies, thus teaching us valuable lessons on the physical mechanisms of galaxy growth and the collapse of large scale structure in an evolving Universe.

Chandra Early Type Galaxy Atals

NASA Astrophysics Data System (ADS)

Kim, Dong-Woo; Anderson, Craig; Burke, Douglas J.; Fabbiano, Giuseppina; Fruscione, Antonella; Lauer, Jennifer; McCollough, Michael; Morgan, Douglas; Mossman, Amy; O'Sullivan, Ewan; Paggi, Alessandro; Vrtilek, Saeqa Dil; Trinchieri, Ginevra

2017-08-01

The hot gas in early type galaxies (ETGs) plays a crucial role in understanding their formation and evolution. As the hot gas is often extended to the outskirts beyond the optical size, the large scale structural features identified by Chandra (including jets, cavities, cold fronts, filaments and tails) point to key evolutionary mechanisms, e.g., AGN feedback, merging history, accretion, stripping and star formation and its quenching. We have systematically analyzed the archival Chandra data of ~100 ETGs to study the hot ISM. We produce the uniformly derived data products with spatially resolved spectral information and will make them accessible via a public web site. With 2D spectral infomation, we further discuss gas morphology, scaling relations, X-ray based mass profiles and their implications related to various physical mechanisms (e.g., stellar and AGN feedback).

Fundamental Principles of Network Formation among Preschool Children1

PubMed Central

Schaefer, David R.; Light, John M.; Fabes, Richard A.; Hanish, Laura D.; Martin, Carol Lynn

2009-01-01

The goal of this research was to investigate the origins of social networks by examining the formation of children’s peer relationships in 11 preschool classes throughout the school year. We investigated whether several fundamental processes of relationship formation were evident at this age, including reciprocity, popularity, and triadic closure effects. We expected these mechanisms to change in importance over time as the network crystallizes, allowing more complex structures to evolve from simpler ones in a process we refer to as structural cascading. We analyzed intensive longitudinal observational data of children’s interactions using the SIENA actor-based model. We found evidence that reciprocity, popularity, and triadic closure all shaped the formation of preschool children’s networks. The influence of reciprocity remained consistent, whereas popularity and triadic closure became increasingly important over the course of the school year. Interactions between age and endogenous network effects were nonsignificant, suggesting that these network formation processes were not moderated by age in this sample of young children. We discuss the implications of our longitudinal network approach and findings for the study of early network developmental processes. PMID:20161606

Thermally Altered Silurian Cyanobacterial Mats: A Key to Earth's Oldest Fossils

NASA Astrophysics Data System (ADS)

Kazmierczak, Józef; Kremer, Barbara

2009-10-01

Diagenetic changes in thermally altered cyanobacterial mats from early Silurian black radiolarian cherts of southwestern Poland (Bardzkie Montains, Sudetes) have been studied. These early diagenetically silicified mats are composed of variously degraded remains of benthic microbes that resemble some modern chroococcalean and pleurocapsalean cyanobacteria. Two modes of degradational processes have been recognized in the studied mats: (i) early postmortem biodegradation and (ii) late diagenetic thermal or thermobaric degradation. The latter led to partial transformation of the fossilized organic remnants of cyanobacterial sheaths and capsules, which resulted in the formation of objects morphologically distant from the original microbiota but preserved features that allow for their identification as bona fide biogenic structures. Some of these thermally generated Silurian fossils are highly similar to the controversial microfossil-like carbonaceous structures described from the Early Archean Apex Chert of Australia. This similarity opens a promising way for credible recognition of remnants of cyanobacteria and similar microbiota in other thermally metamorphosed Archean sedimentary rocks

Characterization of two distinct beta2-microglobulin unfolding intermediates that may lead to amyloid fibrils of different morphology.

PubMed

Armen, Roger S; Daggett, Valerie

2005-12-13

The self-assembly of beta(2)-microglobulin into fibrils leads to dialysis-related amyloidosis. pH-mediated partial unfolding is required for the formation of the amyloidogenic intermediate that then self-assembles into amyloid fibrils. Two partially folded intermediates of beta(2)-microglobulin have been identified experimentally and linked to the formation of fibrils of distinct morphology, yet it remains difficult to characterize these partially unfolded states at high resolution using experimental approaches. Consequently, we have performed molecular dynamics simulations at neutral and low pH to determine the structures of these partially unfolded amyloidogenic intermediates. In the low-pH simulations, we observed the formation of alpha-sheet structure, which was first proposed by Pauling and Corey. Multiple simulations were performed, and two distinct intermediate state ensembles were identified that may account for the different fibril morphologies. The predominant early unfolding intermediate was nativelike in structure, in agreement with previous NMR studies. The late unfolding intermediate was significantly disordered, but it maintained an extended elongated structure, with hydrophobic clusters and residual alpha-extended chain strands in specific regions of the sequence that map to amyloidogenic peptides. We propose that the formation of alpha-sheet facilitates self-assembly into partially unfolded prefibrillar amyloidogenic intermediates.

Alternative sweeteners influence the biomass of oral biofilm.

PubMed

Abdul Razak, Fathilah; Baharuddin, Baizatul Amirah; Akbar, Elisya Farha Mohd; Norizan, Amira Hanim; Ibrahim, Nur Fazilah; Musa, Md Yusoff

2017-08-01

Compact-structured oral biofilm accumulates acids that upon prolonged exposure to tooth surface, causes demineralisation of enamel. This study aimed to assess the effect of alternative sweeteners Equal Stevia ® , Tropicana Slim ® , Pal Sweet ® and xylitol on the matrix-forming activity of plaque biofilm at both the early and established stages of formation. Saliva-coated glass beads (sGB) were used as substratum for the adhesion of a mixed-bacterial suspension of Streptococcus mutans, Streptococcus sanguinis and Streptococcus mitis. Biofilms formed on sGB at 3h and 24h represented the early and established-plaque models. The biofilms were exposed to three doses of the sweeteners (10%), introduced at three intervals to simulate the exposure of dental plaque to sugar during three consecutive food intakes. The treated sGB were (i) examined under the SEM and (ii) collected for turbidity reading. The absorbance indicated the amount of plaque mass produced. Analysis was performed comparative to sucrose as control. Higher rate of bacterial adherence was determined during the early compared to established phases of formation. Comparative to the sweeteners, sucrose showed a 40% increase in bacterial adherence and produced 70% more plaque-mass. Bacterial counts and SEM micrographs exhibited absence of matrix in all the sweetener-treated biofilms at the early phase of formation. At the established phase, presence of matrix was detected but at significantly lower degree compared to sucrose (p<0.05). Alternatives sweeteners promoted the formation of oral biofilm with lighter mass and lower bacterial adherence. Hence, suggesting alternative sweeteners as potential antiplaque agents. Copyright © 2017 Elsevier Ltd. All rights reserved.

Mineral Trends in Early Hesperian Lacustrine Mudstone at Gale Crater, Mars

NASA Technical Reports Server (NTRS)

Rampe, E. B.; Ming, D. W.; Grotzinger, J. P.; Morris, R. V.; Blake, D. F.; Vaniman, D. T.; Bristow, T. F.; Morrison, S. M.; Yen, A. S.; Chipera, S. J.;

Galaxy evolution in extreme environments: Molecular gas content star formation and AGN in isolated void galaxies

NASA Astrophysics Data System (ADS)

Das, Mousumi; Iono, Daisuke; Saito, Toshiki; Subramanian, Smitha

Since the early redshift surveys of the large scale structure of our universe, it has become clear that galaxies cluster along walls, sheet and filaments leaving large, empty regions called voids between them. Although voids represent the most under dense parts of our universe, they do contain a sparse but significant population of isolated galaxies that are generally low luminosity, late type disk galaxies. Recent studies show that most void galaxies have ongoing star formation and are in an early stage of evolution. We present radio, optical studies of the molecular gas content and star formation in a sample of void galaxies. Using SDSS data, we find that AGN are rare in these systems and are found only in the Bootes void; their black hole masses and radio properties are similar to bright spirals galaxies. Our studies suggest that close galaxy interactions and gas accretion are the main drivers of galaxy evolution in these systems despite their location in the underdense environment of the voids.

Late Precambrian-Cambrian sediments of Huqf group, Sultanate of Oman

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gorin, G.E.; Racz, L.G.; Walter, M.R.

1982-12-01

The Huqf Group is the oldest known sedimentary sequence overlying crystalline basement in the Sultanate of Oman. It crops out on a broad regional high, the Huqf Axis, which forms a dominating structural element on the southeastern edge of the Arabian peninsula. Subsurface and outcrop evidence within and outside of Oman suggests that the sediments of the Huqf Group lie within the age span of late Precambrian to Early-Middle Cambrian. The Huqf Group is subdivided into five formations corresponding to an alternation of clastics (Abu Mahara and Shuram Formations) and carbonates (Khufai and Buah Formations) deposited in essentially shallow marinemore » to supratidal (or fluviatile) conditions and terminated by an evaporitic sequence (Ara Formation). Evaporites are absent on the Huqf Axis, but they are thickly developed to the west over a large part of southern and central Oman, where they acted as the major structure former of most of Oman's fields, and even locally pierced up to the surface. Regional correlations suggest that the predominantly carbonate-evaporitic facies of the Huqf Group was widely distributed in late Precambrian-Early Cambrian time: the Huqf basin is tentatively considered part of a belt of evaporitic basins and intervening carbonate platforms, which stretched across the Pangea landmass from the Indian subcontinent (Salt Range of Pakistan) through South Yemen, Oman, and Saudi Arabia into the gulf states and Iran (Hormuz Series and carbonate platform north of the Zagros).« less

Presence of Extracellular DNA during Biofilm Formation by Xanthomonas citri subsp. citri Strains with Different Host Range.

PubMed

Sena-Vélez, Marta; Redondo, Cristina; Graham, James H; Cubero, Jaime

2016-01-01

Xanthomonas citri subsp. citri (Xcc) A strain causes citrus bacterial canker, a serious leaf, fruit and stem spotting disease of several Citrus species. X. alfalfae subsp. citrumelonis (Xac) is the cause of citrus bacterial spot, a minor disease of citrus nursery plants and X. campestris pv. campestris (Xc) is a systemic pathogen that causes black rot of cabbage. Xanthomonas spp. form biofilms in planta that facilitate the host infection process. Herein, the role of extracellular DNA (eDNA) was evaluated in the formation and stabilization of the biofilm matrix at different stages of biofilm development. Fluorescence and light microscopy, as well as DNAse treatments, were used to determine the presence of eDNA in biofilms and bacterial cultures. DNAse treatments of Xcc strains and Xac reduced biofilm formation at the initial stage of development, as well as disrupted preformed biofilm. By comparison, no significant effect of the DNAse was detected for biofilm formation by Xc. DNAse effects on biofilm formation or disruption varied among Xcc strains and Xanthomonas species which suggest different roles for eDNA. Variation in the structure of fibers containing eDNA in biofilms, bacterial cultures, and in twitching motility was also visualized by microscopy. The proposed roles for eDNA are as an adhesin in the early stages of biofilm formation, as an structural component of mature bacterial aggregates, and twitching motility structures.

Gel Phase Formation in Dilute Triblock Copolyelectrolyte Complexes

NASA Astrophysics Data System (ADS)

Srivastava, Samanvaya; Andreev, Marat; Prabhu, Vivek; de Pablo, Juan; Tirrell, Matthew

Assembly of oppositely charged triblock copolyelectrolytes into phase-separated gels at extremely low polymer concentrations (<1 % by mass) has been observed in scattering experiments and molecular dynamics simulations. In contrast to uncharged, amphiphilic block copolymers that form discrete micelles at low concentrations and enter a phase of strongly interacting micelles in a gradual manner with increasing polymer concentrations, the formation of a dilute phase of individual micelles is prevented in polyelectrolyte complexation-driven assemblies of triblock copolyelectrolytes. Gel phases form and phase separate almost instantaneously upon solvation of the copolymers. Furthermore, molecular models of self-assembly demonstrate the presence of oligo-chain aggregates in early stages of triblock copolyelectrolyte assembly, at experimentally unobservable polymer concentrations. Our discoveries not only contribute to our fundamental understanding of the structure and pathways of complexation driven assemblies, but also raise intriguing prospects for formation of gel structures at extraordinarily low concentrations, with applications in tissue engineering, agriculture, water purification and theranostics.

A framework for evaluating the formation, implementation, and performance of accountable care organizations.

PubMed

Fisher, Elliott S; Shortell, Stephen M; Kreindler, Sara A; Van Citters, Aricca D; Larson, Bridget K

2012-11-01

The implementation of accountable care organizations (ACOs), a new health care payment and delivery model designed to improve care and lower costs, is proceeding rapidly. We build on our experience tracking early ACOs to identify the major factors-such as contract characteristics; structure, capabilities, and activities; and local context-that would be likely to influence ACO formation, implementation, and performance. We then propose how an ACO evaluation program could be structured to guide policy makers and payers in improving the design of ACO contracts, while providing insights for providers on approaches to care transformation that are most likely to be successful in different contexts. We also propose key activities to support evaluation of ACOs in the near term, including tracking their formation, developing a set of performance measures across all ACOs and payers, aggregating those performance data, conducting qualitative and quantitative research, and coordinating different evaluation activities.

On the temporal evolution of long-wavelength mantle structure of the Earth since the early Paleozoic

NASA Astrophysics Data System (ADS)

Zhong, Shijie; Rudolph, Maxwell L.

2015-05-01

The seismic structure of the Earth's lower mantle is characterized by a dominantly degree-2 pattern with the African and Pacific large low shear velocity provinces (i.e., LLSVP) that are separated by circum-Pacific seismically fast anomalies. It is important to understand the origin of such a degree-2 mantle structure and its temporal evolution. In this study, we investigated the effects of plate motion history and mantle viscosity on the temporal evolution of the lower mantle structure since the early Paleozoic by formulating 3-D spherical shell models of thermochemical convection. For convection models with realistic mantle viscosity and no initial structure, it takes about ˜50 Myr to develop dominantly degree-2 lower mantle structure using the published plate motion models for the last either 120 Ma or 250 Ma. However, it takes longer time to develop the mantle structure for more viscous mantle. While the circum-Pangea subduction in plate motion history models promotes the formation of degree-2 mantle structure, the published pre-Pangea plate motions before 330 Ma produce relatively cold lower mantle in the African hemisphere and significant degree-1 structure in the early Pangea (˜300 Ma) or later times, even if the lower mantle has an initially degree-2 structure and a viscosity as high as 1023 Pas. This suggests that the African LLSVP may not be stationary since the early Paleozoic. With the published plate motion models and lower mantle viscosity of 1022 Pas, our mantle convection models suggest that the present-day degree-2 mantle structure may have largely been formed by ˜200 Ma.

Stepwise Organization of the β-Structure Identifies Key Regions Essential for the Propagation and Cytotoxicity of Insulin Amyloid Fibrils*

PubMed Central

Chatani, Eri; Imamura, Hiroshi; Yamamoto, Naoki; Kato, Minoru

2014-01-01

Amyloid fibrils are supramolecular assemblies, the deposition of which is associated with many serious diseases including Alzheimer, prion, and Huntington diseases. Several smaller aggregates such as oligomers and protofibrils have been proposed to play a role in early stages of the fibrillation process; however, little is known about how these species contribute to the formation of mature amyloid fibrils with a rigid cross-β structure. Here, we identified a new pathway for the formation of insulin amyloid fibrils at a high concentration of salt in which mature fibrils were formed in a stepwise manner via a prefibrillar intermediate: minute prefibrillar species initially accumulated, followed by the subsequent formation of thicker amyloid fibrils. Fourier transform infrared spectra suggested the sequential formation of two types of β-sheets with different strength hydrogen bonds, one of which was developed concomitantly with the mutual assembly of the prefibrillar intermediate to form mature fibrils. Interestingly, fibril propagation and cellular toxicity appeared only after the later step of structural organization, and a comparison of β-sheet regions between the prefibrillar intermediate and mature fibrils using proteolysis led to the proposal of specific regions essential for manifestation of these properties. PMID:24569992

Three-dimensional large-eddy simulations of the early phase of contrail-to-cirrus transition: effects of atmospheric turbulence and radiative transfer

DOE PAGES

Paoli, Roberto; Thouron, Odile; Cariolle, Daniel; ...

2017-12-08

Here, this article presents the results from numerical experiments of the early phase of contrail-cirrus formation using a limited set of fully three-dimensional, high-resolution large-eddy-simulations. The focus is laid on the interplay between atmospheric turbulence and the radiative transfer (and to a limited extent the ambient ice relative humidity), and how this interaction affects the contrail evolution and the characteristics of the resulting contrail-cirrus one hour after emission. Turbulence is sustained via a large-scale stochastic forcing that creates a non-uniform shear in addition to pure turbulent fluctuations. This effect manifests in the formation of vertically sheared structures of ice crystals.more » When radiative transfer is activated, ice tends to redistribute more uniformly along the vertical direction forming spotty vertical structures. For the conditions analyzed in this study, atmospheric turbulence, inclusive of non-uniform turbulent shear and turbulent fluctuations, affects primarily the contrail width whereas the microphysical properties such ice water path and ice mass are controlled by radiative transfer and relative humidity.« less

Three-dimensional large-eddy simulations of the early phase of contrail-to-cirrus transition: effects of atmospheric turbulence and radiative transfer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paoli, Roberto; Thouron, Odile; Cariolle, Daniel

Here, this article presents the results from numerical experiments of the early phase of contrail-cirrus formation using a limited set of fully three-dimensional, high-resolution large-eddy-simulations. The focus is laid on the interplay between atmospheric turbulence and the radiative transfer (and to a limited extent the ambient ice relative humidity), and how this interaction affects the contrail evolution and the characteristics of the resulting contrail-cirrus one hour after emission. Turbulence is sustained via a large-scale stochastic forcing that creates a non-uniform shear in addition to pure turbulent fluctuations. This effect manifests in the formation of vertically sheared structures of ice crystals.more » When radiative transfer is activated, ice tends to redistribute more uniformly along the vertical direction forming spotty vertical structures. For the conditions analyzed in this study, atmospheric turbulence, inclusive of non-uniform turbulent shear and turbulent fluctuations, affects primarily the contrail width whereas the microphysical properties such ice water path and ice mass are controlled by radiative transfer and relative humidity.« less

Chordin and dickkopf-1b are essential for the formation of head structures through activation of the FGF signaling pathway in zebrafish.

PubMed

Tanaka, Shingo; Hosokawa, Hiroshi; Weinberg, Eric S; Maegawa, Shingo

2017-04-15

The ability of the Spemann organizer to induce dorsal axis formation is dependent on downstream factors of the maternal Wnt/β-catenin signaling pathway. The fibroblast growth factor (FGF) signaling pathway has been identified as one of the downstream components of the maternal Wnt/β-catenin signaling pathway. The ability of the FGF signaling pathway to induce the formation of a dorsal axis with a complete head structure requires chordin (chd) expression; however, the molecular mechanisms involved in this developmental process, due to activation of FGF signaling, remain unclear. In this study, we showed that activation of the FGF signaling pathway induced the formation of complete head structures through the expression of chd and dickkopf-1b (dkk1b). Using the organizer-deficient maternal mutant, ichabod, we identified dkk1b as a novel downstream factor in the FGF signaling pathway. We also demonstrate that dkk1b expression is necessary, after activation of the FGF signaling pathway, to induce neuroectoderm patterning along the anteroposterior (AP) axis and for formation of complete head structures. Co-injection of chd and dkk1b mRNA resulted in the formation of a dorsal axis with a complete head structure in ichabod embryos, confirming the role of these factors in this developmental process. Unexpectedly, we found that chd induced dkk1b expression in ichabod embryos at the shield stage. However, chd failed to maintain dkk1b expression levels in cells of the shield and, subsequently, in the cells of the prechordal plate after mid-gastrula stage. In contrast, activation of the FGF signaling pathway maintained the dkk1b expression from the beginning of gastrulation to early somitogenesis. In conclusion, activation of the FGF signaling pathway induces the formation of a dorsal axis with a complete head structure through the expression of chd and subsequent maintenance of dkk1b expression levels. Copyright © 2017 Elsevier Inc. All rights reserved.

Discovery of the Kinematic Alignment of Early-type Galaxies in the Virgo Cluster

NASA Astrophysics Data System (ADS)

Kim, Suk; Jeong, Hyunjin; Lee, Jaehyun; Lee, Youngdae; Joo, Seok-Joo; Kim, Hak-Sub; Rey, Soo-Chang

2018-06-01

Using the kinematic position angles (PAkin), an accurate indicator for the spin axis of a galaxy, obtained from the ATLAS3D integral-field-unit (IFU) spectroscopic data, we discovered that 57 Virgo early-type galaxies tend to prefer the specific PAkin values of 20° and 100°, suggesting that they are kinematically aligned with each other. These kinematic alignment angles are further associated with the directions of the two distinct axes of the Virgo cluster extending east–west and north–south, strongly suggesting that the two distinct axes are the filamentary structures within the cluster as a trace of infall patterns of galaxies. Given that the spin axis of a massive early-type galaxy does not change easily even in clusters from the hydrodynamic simulations, Virgo early-type galaxies are likely to fall into the cluster along the filamentary structures while maintaining their angular momentum. This implies that many early-type galaxies in clusters are formed in filaments via major mergers before subsequently falling into the cluster. Investigating the kinematic alignment in other clusters will allow us to understand the formation of galaxy clusters and early-type galaxies.

Pannus inflammation in sacroiliitis following immune pathological injury and radiological structural damage: a study of 193 patients with spondyloarthritis.

PubMed

Wang, Dan Min; Lin, Ling; Peng, Jian Hua; Gong, Yao; Hou, Zhi Duo; Chen, Su Biao; Xiao, Zheng Yu

2018-06-08

The pathogenesis of sacroiliitis is unclear; therefore, we aimed to systematically study the immunopathology of sacroiliitis in patients with axial spondyloarthritis (axSpA), and explore the relationship between pannus formation, inflammation, and the structural damage caused by sacroiliitis. Fine needle aspiration biopsy of the sacroiliac joint (SIJ) was performed in 193 patients with axSpA. Clinical, laboratory, and imaging data were collected at baseline and during the follow up. Immunohistochemistry analysis was performed to detect CD34+ microvessels, CD68+ osteoclasts/macrophages, vascular endothelial growth factor (VEGF), metalloproteinase-3 (MMP-3), tumor necrosis factor-α (TNF-α), and caspase-3. Autopsy subjects were used as controls. In early sacroiliitis (grade 0-1) all pathological features could be observed, with the most common being subchondral pannus formation. Among the 193 patients, 98 were followed up for 1-13 years (mean 3.6 years); 63.3% had radiological progression at the endpoint. Multiple regression analysis showed that cartilage pannus invasion (OR 2.99, P = 0.010) and endochondral ossification (OR 3.97, P = 0.049) at baseline were risk factors for radiological structural damage. Compared to SIJ controls, the subchondral microvessel density, number of CD68+ multinuclear osteoclasts, and the levels of VEGF, caspase-3, MMP-3, and TNF-α expressed at the interface of the bone and cartilage were significantly higher in patients with sacroiliitis. Subchondral fibrovascular tissue formation is the most important pathological feature in early sacroiliitis. The existence of cartilage pannus invasion or endochondral ossification at baseline can predict radiological structural damage during the follow up.

Temporal cohesion of the structural, functional and molecular characteristics of the developing zebrafish heart.

PubMed

Matrone, Gianfranco; Wilson, Kathryn S; Mullins, John J; Tucker, Carl S; Denvir, Martin A

2015-06-01

Heart formation is a complex, dynamic and highly coordinated process of molecular, morphogenetic and functional factors with each interacting and contributing to formation of the mature organ. Cardiac abnormalities in early life can be lethal in mammals but not in the zebrafish embryo which has been widely used to study the developing heart. While early cardiac development in the zebrafish has been well characterized, functional changes during development and how these relate to architectural, cellular and molecular aspects of development have not been well described previously. To address this we have carefully characterised cardiac structure, function, cardiomyocyte proliferation and cardiac-specific gene expression between 48 and 120 hpf in the zebrafish. We show that the zebrafish heart increases in volume and changes shape significantly between 48 and 72 hpf accompanied by a 40% increase in cardiomyocyte number. Between 96 and 120 hpf, while external heart expansion slows, there is rapid formation of a mature and extensive trabecular network within the ventricle chamber. While ejection fraction does not change during the course of development other determinants of contractile function increase significantly particularly between 72 and 96 hpf leading to an increase in cardinal vein blood flow. This study has revealed a number of novel aspects of cardiac developmental dynamics with striking temporal orchestration of structure and function within the first few days of development. These changes are associated with changes in expression of developmental and maturational genes. This study provides important insights into the complex temporal relationship between structure and function of the developing zebrafish heart. Copyright © 2015 International Society of Differentiation. Published by Elsevier B.V. All rights reserved.

Monitoring bacterial biofilms with a microfluidic flow chip designed for imaging with white-light interferometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brann, Michelle; Suter, Jonathan D.; Addleman, R. Shane

There is a need for imaging and sensing instrumentation that can monitor transitions in biofilm structure in order to better understand biofilm development and emergent properties such as anti-microbial resistance. Herein, we expanded on our previously reported technique for measuring and monitoring the thickness and topology of live biofilms using white-light interferometry (WLI). A flow cell designed for WLI enabled the use of this non-disruptive imaging method for the capture of high resolution three-dimensional profile images of biofilm growth over time. The fine axial resolution (3 nm) and wide field of view (>1 mm by 1 mm) enabled detection ofmore » biofilm formation as early as three hours after inoculation of the flow cell with a live bacterial culture (Pseudomonas fluorescens). WLI imaging facilitated monitoring the early stages of biofilm development and subtle variations in the structure of mature biofilms. Minimally-invasive imaging enabled monitoring of biofilm structure with surface metrology metrics (e.g., surface roughness). The system was used to observe a transition in biofilm structure that occurred in response to expsoure to a common antiseptic. In the future, WLI and the biofilm imaging cell described herein may be used to test the effectiveness of biofilm-specific therapies to combat common diseases associated with biofilm formation such as cystic fibrosis and periodontitis.« less

Microbial shaping of sedimentary wrinkle structures

NASA Astrophysics Data System (ADS)

Mariotti, G.; Pruss, S. B.; Perron, J. T.; Bosak, T.

2014-10-01

Wrinkle structures on sandy bed surfaces were present in some of the earliest sedimentary environments, but are rare in modern environments. These enigmatic millimetre- to centimetre-scale ridges or pits are particularly common in sediments that harbour trace fossils and imprints of early animals, and appeared in the aftermath of some large mass extinctions. Wrinkle structures have been interpreted as possible remnants of microbial mats, but the formation mechanism and associated palaeoenvironmental and palaeoecological implications of these structures remain debated. Here we show that microbial aggregates can form wrinkle structures on a bed of bare sand in wave tank experiments. Waves with a small orbital amplitude at the bed surface do not move sand grains directly. However, they move millimetre-size, light microbial fragments and thereby produce linear sand ridges and rounded scour pits at the wavelengths observed in nature within hours. We conclude that wrinkle structures are morphological biosignatures that form at the sediment-water interface in wave-dominated environments, and not beneath microbial mats as previously thought. During early animal evolution, grazing by eukaryotic organisms may have temporarily increased the abundance of microbial fragments and thus the production of wrinkle structures.

Hot Gas in Merging Subgroups; Probing the Early Stages of Structure Formation

NASA Astrophysics Data System (ADS)

Machacek, Marie

2014-08-01

To fully understand the growth of large scale structure in hierarchical cosmological models, we must first understand how their building blocks, low mass galaxy subgroups, evolve through mergers. These galaxy subgroups are X-ray faint and difficult to observe at high redshift. The study of near-by subgroup mergers may be used as templates to gain insight into the dominant dynamical processes that are at work in the early universe. We use Chandra observations of edges, tails and wings in a sample of near-by galaxy groups ( Pavo, Telescopium, Pegasus, NGC7618/UGC12491 to measure the properties of the diffuse gas, merger velocities, shocks and non-hydrostatic gas 'sloshing', as their common ICM envelopes evolves.

The mammalian blastema: regeneration at our fingertips

PubMed Central

Simkin, Jennifer; Sammarco, Mimi C.; Dawson, Lindsay A.; Schanes, Paula P.; Yu, Ling

2015-01-01

Abstract In the mouse, digit tip regeneration progresses through a series of discrete stages that include inflammation, histolysis, epidermal closure, blastema formation, and redifferentiation. Recent studies reveal how each regenerative stage influences subsequent stages to establish a blastema that directs the successful regeneration of a complex mammalian structure. The focus of this review is on early events of healing and how an amputation wound transitions into a functional blastema. The stepwise formation of a mammalian blastema is proposed to provide a model for how specific targeted treatments can enhance regenerative performance in humans. PMID:27499871

Live-cell imaging for the assessment of the dynamics of autophagosome formation: focus on early steps.

PubMed

Karanasios, Eleftherios; Ktistakis, Nicholas T

2015-03-01

Autophagy is a cytosolic degradative pathway, which through a series of complicated membrane rearrangements leads to the formation of a unique double membrane vesicle, the autophagosome. The use of fluorescent proteins has allowed visualizing the autophagosome formation in live cells and in real time, almost 40 years after electron microscopy studies observed these structures for the first time. In the last decade, live-cell imaging has been extensively used to study the dynamics of autophagosome formation in cultured mammalian cells. Hereby we will discuss how the live-cell imaging studies have tried to settle the debate about the origin of the autophagosome membrane and how they have described the way different autophagy proteins coordinate in space and time in order to drive autophagosome formation. Copyright © 2014 Elsevier Inc. All rights reserved.

Proliferation of MISS-related microbial mats following the end-Permian mass extinction in terrestrial ecosystems: Evidence from the Lower Triassic of the Yiyang area, Henan Province, North China

NASA Astrophysics Data System (ADS)

Tu, Chenyi; Chen, Zhong-Qiang; Retallack, Gregory J.; Huang, Yuangeng; Fang, Yuheng

2016-03-01

Microbially induced sedimentary structures (MISSs) are commonly present in siliciclastic shallow marine settings following the end-Permian mass extinction, but have been rarely reported in the post-extinction terrestrial ecosystems. Here, we present six types of well-preserved MISSs from the upper Sunjiagou Formation and lower Liujiagou Formation of Induan (Early Triassic) age in the Yiyang area, Henan Province, North China. These MISSs include: polygonal sand cracks, worm-like structures, wrinkle structures, sponge pore fabrics, gas domes, and leveled ripple marks. Microanalysis shows that these MISSs are characterized by thin clayey laminae and filamentous mica grains arranged parallel to bedding plane as well as oriented matrix supported quartz grains, which are indicative of biogenic origin. Facies analysis suggests that the MISS-hosting sediments were deposited in a fluvial sedimentary system during the Early Triassic, including lake delta, riverbeds/point bars, and flood plain paleoenvironments. Abundant MISSs from Yiyang indicate that microbes also proliferated in terrestrial ecosystems in the aftermath of the Permian-Triassic (P-Tr) biocrisis, like they behaved in marine ecosystems. Microbial blooms, together with dramatic loss of metazoans, may reflect environmental stress and degradation of terrestrial ecosystems or arid climate immediately after the severe Permian-Triassic ecologic crisis.

Evidence for disks at an early stage in class 0 protostars?

NASA Astrophysics Data System (ADS)

Gerin, M.; Pety, J.; Commerçon, B.; Fuente, A.; Cernicharo, J.; Marcelino, N.; Ciardi, A.; Lis, D. C.; Roueff, E.; Wootten, H. A.; Chapillon, E.

2017-10-01

Aims: The formation epoch of protostellar disks is debated because of the competing roles of rotation, turbulence, and magnetic fields in the early stages of low-mass star formation. Magnetohydrodynamics simulations of collapsing cores predict that rotationally supported disks may form in strongly magnetized cores through ambipolar diffusion or misalignment between the rotation axis and the magnetic field orientation. Detailed studies of individual sources are needed to cross check the theoretical predictions. Methods: We present 0.06-0.1'' resolution images at 350 GHz toward B1b-N and B1b-S, which are young class 0 protostars, possibly first hydrostatic cores. The images have been obtained with ALMA, and we compare these data with magnetohydrodynamics simulations of a collapsing turbulent and magnetized core. Results: The submillimeter continuum emission is spatially resolved by ALMA. Compact structures with optically thick 350 GHz emission are detected toward both B1b-N and B1b-S, with 0.2 and 0.35'' radii (46 and 80 au at the Perseus distance of 230 pc), within a more extended envelope. The flux ratio between the compact structure and the envelope is lower in B1b-N than in B1b-S, in agreement with its earlier evolutionary status. The size and orientation of the compact structure are consistent with 0.2'' resolution 32 GHz observations obtained with the Very Large Array as a part of the VANDAM survey, suggesting that grains have grown through coagulation. The morphology, temperature, and densities of the compact structures are consistent with those of disks formed in numerical simulations of collapsing cores. Moreover, the properties of B1b-N are consistent with those of a very young protostar, possibly a first hydrostatic core. These observations provide support for the early formation of disks around low-mass protostars. The reduced images and datacubes are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/606/A35

Atlantic Deep-water Response to the Early Pliocene Shoaling of the Central American Seaway.

PubMed

Bell, David B; Jung, Simon J A; Kroon, Dick; Hodell, David A; Lourens, Lucas J; Raymo, Maureen E

2015-07-20

The early Pliocene shoaling of the Central American Seaway (CAS), ~4.7-4.2 million years ago (mega annum-Ma), is thought to have strengthened Atlantic Meridional Overturning Circulation (AMOC). The associated increase in northward flux of heat and moisture may have significantly influenced the evolution of Pliocene climate. While some evidence for the predicted increase in North Atlantic Deep Water (NADW) formation exists in the Caribbean and Western Atlantic, similar evidence is missing in the wider Atlantic. Here, we present stable carbon (δ(13)C) and oxygen (δ(18)O) isotope records from the Southeast Atlantic-a key region for monitoring the southern extent of NADW. Using these data, together with other δ(13)C and δ(18)O records from the Atlantic, we assess the impact of the early Pliocene CAS shoaling phase on deep-water circulation. We find that NADW formation was vigorous prior to 4.7 Ma and showed limited subsequent change. Hence, the overall structure of the deep Atlantic was largely unaffected by the early Pliocene CAS shoaling, corroborating other evidence that indicates larger changes in NADW resulted from earlier and deeper shoaling phases. This finding implies that the early Pliocene shoaling of the CAS had no profound impact on the evolution of climate.

Atlantic Deep-water Response to the Early Pliocene Shoaling of the Central American Seaway

PubMed Central

Bell, David B.; Jung, Simon J. A.; Kroon, Dick; Hodell, David A.; Lourens, Lucas J.; Raymo, Maureen E.

2015-01-01

The early Pliocene shoaling of the Central American Seaway (CAS), ~4.7–4.2 million years ago (mega annum-Ma), is thought to have strengthened Atlantic Meridional Overturning Circulation (AMOC). The associated increase in northward flux of heat and moisture may have significantly influenced the evolution of Pliocene climate. While some evidence for the predicted increase in North Atlantic Deep Water (NADW) formation exists in the Caribbean and Western Atlantic, similar evidence is missing in the wider Atlantic. Here, we present stable carbon (δ13C) and oxygen (δ18O) isotope records from the Southeast Atlantic-a key region for monitoring the southern extent of NADW. Using these data, together with other δ13C and δ18O records from the Atlantic, we assess the impact of the early Pliocene CAS shoaling phase on deep-water circulation. We find that NADW formation was vigorous prior to 4.7 Ma and showed limited subsequent change. Hence, the overall structure of the deep Atlantic was largely unaffected by the early Pliocene CAS shoaling, corroborating other evidence that indicates larger changes in NADW resulted from earlier and deeper shoaling phases. This finding implies that the early Pliocene shoaling of the CAS had no profound impact on the evolution of climate. PMID:26193070

Analysis of interstellar cloud structure based on IRAS images

NASA Technical Reports Server (NTRS)

Scalo, John M.

1992-01-01

The goal of this project was to develop new tools for the analysis of the structure of densely sampled maps of interstellar star-forming regions. A particular emphasis was on the recognition and characterization of nested hierarchical structure and fractal irregularity, and their relation to the level of star formation activity. The panoramic IRAS images provided data with the required range in spatial scale, greater than a factor of 100, and in column density, greater than a factor of 50. In order to construct densely sampled column density maps of star-forming clouds, column density images of four nearby cloud complexes were constructed from IRAS data. The regions have various degrees of star formation activity, and most of them have probably not been affected much by the disruptive effects of young massive stars. The largest region, the Scorpius-Ophiuchus cloud complex, covers about 1000 square degrees (it was subdivided into a few smaller regions for analysis). Much of the work during the early part of the project focused on an 80 square degree region in the core of the Taurus complex, a well-studied region of low-mass star formation.

Phage-induced lysis enhances biofilm formation in Shewanella oneidensis MR-1

PubMed Central

Gödeke, Julia; Paul, Kristina; Lassak, Jürgen; Thormann, Kai M

2011-01-01

Shewanella oneidensis MR-1 is capable of forming highly structured surface-attached communities. By DNase I treatment, we demonstrated that extracellular DNA (eDNA) serves as a structural component in all stages of biofilm formation under static and hydrodynamic conditions. We determined whether eDNA is released through cell lysis mediated by the three prophages LambdaSo, MuSo1 and MuSo2 that are harbored in the genome of S. oneidensis MR-1. Mutant analyses and infection studies revealed that all three prophages may individually lead to cell lysis. However, only LambdaSo and MuSo2 form infectious phage particles. Phage release and cell lysis already occur during early stages of static incubation. A mutant devoid of the prophages was significantly less prone to lysis in pure culture. In addition, the phage-less mutant was severely impaired in biofilm formation through all stages of development, and three-dimensional growth occurred independently of eDNA as a structural component. Thus, we suggest that in S. oneidensis MR-1 prophage-mediated lysis results in the release of crucial biofilm-promoting factors, in particular eDNA. PMID:20962878

A preliminary study in osteoinduction by a nano-crystalline hydroxyapatite in the mini pig.

PubMed

Götz, Werner; Lenz, Solvig; Reichert, Christoph; Henkel, Kai-Olaf; Bienengräber, Volker; Pernicka, Laura; Gundlach, Karsten K H; Gredes, Tomasz; Gerber, Thomas; Gedrange, Tomasz; Heinemann, Friedhelm

2010-12-01

To test the probable osteoinductive properties of NanoBone, a new highly non-sintered porous nano-crystalline hydroxylapatite bone substitute embedded into a silica gel matrix, granules were implanted subcutaneously and intramuscularly into the back region of 18 mini pigs. After periods of 5 and 10 weeks as well as 4 and 8 months, implantation sites were investigated using histological and histomorphometric procedures. Signs of early osteogenesis could already be detected after 5 weeks. The later periods were characterized by increasing membranous osteogenesis in and around the granules leading to the formation of bone-like structures showing periosteal and tendon-like structures with bone marrow and focal chondrogenesis. Bone formation was better in the subcutaneous than in the intramuscular implantation sites. This ectopic osteogenesis is discussed with regard to the nanoporosity and microporosity of the material, physico-chemical interactions at its surface, the differentiation of osteoblasts, the role of angiogenesis and the probable involvement of growth factors. The results of this preliminary study indicate that this biomaterial has osteoinductive potential and induces the formation of bone structures, mainly in subcutaneous adipose tissue in the pig.

Pharmacologic inhibition of phospholipase C in the brain attenuates early memory formation in the honeybee (Apis mellifera L.)

PubMed Central

Iino, Shiori; Kubo, Takeo

2018-01-01

ABSTRACT Although the molecular mechanisms involved in learning and memory in insects have been studied intensively, the intracellular signaling mechanisms involved in early memory formation are not fully understood. We previously demonstrated that phospholipase C epsilon (PLCe), whose product is involved in calcium signaling, is almost selectively expressed in the mushroom bodies, a brain structure important for learning and memory in the honeybee. Here, we pharmacologically examined the role of phospholipase C (PLC) in learning and memory in the honeybee. First, we identified four genes for PLC subtypes in the honeybee genome database. Quantitative reverse transcription-polymerase chain reaction revealed that, among these four genes, three, including PLCe, were expressed higher in the brain than in sensory organs in worker honeybees, suggesting their main roles in the brain. Edelfosine and neomycin, pan-PLC inhibitors, significantly decreased PLC activities in homogenates of the brain tissues. These drugs injected into the head of foragers significantly attenuated memory acquisition in comparison with the control groups, whereas memory retention was not affected. These findings suggest that PLC in the brain is involved in early memory formation in the honeybee. To our knowledge, this is the first report of a role for PLC in learning and memory in an insect. PMID:29330349

Single microfilaments mediate the early steps of microtubule bundling during preprophase band formation in onion cotyledon epidermal cells

PubMed Central

Takeuchi, Miyuki; Karahara, Ichirou; Kajimura, Naoko; Takaoka, Akio; Murata, Kazuyoshi; Misaki, Kazuyo; Yonemura, Shigenobu; Staehelin, L. Andrew; Mineyuki, Yoshinobu

2016-01-01

The preprophase band (PPB) is a cytokinetic apparatus that determines the site of cell division in plants. It originates as a broad band of microtubules (MTs) in G2 and narrows to demarcate the future division site during late prophase. Studies with fluorescent probes have shown that PPBs contain F-actin during early stages of their development but become actin depleted in late prophase. Although this suggests that actins contribute to the early stages of PPB formation, how actins contribute to PPB-MT organization remains unsolved. To address this question, we used electron tomography to investigate the spatial relationship between microfilaments (MFs) and MTs at different stages of PPB assembly in onion cotyledon epidermal cells. We demonstrate that the PPB actins observed by fluorescence microscopy correspond to short, single MFs. A majority of the MFs are bound to MTs, with a subset forming MT-MF-MT bridging structures. During the later stages of PPB assembly, the MF-mediated links between MTs are displaced by MT-MT linkers as the PPB MT arrays mature into tightly packed MT bundles. On the basis of these observations, we propose that the primary function of actins during PPB formation is to mediate the initial bundling of the PPB MTs. PMID:27053663

Bilateral persistent sciatic arteries complicated with chronic lower limb ischemia

PubMed Central

Wang, Bin; Liu, Zhenjie; Shen, Laigen

2011-01-01

INTRODUCTION Persistent sciatic artery (PSA) is a rare vascular anomaly associated with a higher rate of aneurysm formation or thromboembolic complications causing lower extremity ischemia. PRESENTATION Of Case A 15-year-old female patient with bilateral PSA presented with lower extremity ischemia. Considering the age and symptoms of the patient, we did not perform any intervention, but continued surveillance with duplex ultrasonography in case of the high incidence of aneurysmal formation or thromboembolic event. DISCUSSION Epidemiology, development, anatomical structure, diagnosis and treatments of PSAs are discussed. CONCLUSION PSAs, are prone to early atheromatous degeneration and aneurysm formation. Treatment of a PSA mainly dependent on the symptoms is either by surgical procedures or by endovascular interventions. PMID:22096762

Mechanisms of plant spindle formation.

PubMed

Zhang, Han; Dawe, R Kelly

2011-04-01

In eukaryotes, the formation of a bipolar spindle is necessary for the equal segregation of chromosomes to daughter cells. Chromosomes, microtubules and kinetochores all contribute to spindle morphogenesis and have important roles during mitosis. A unique property of flowering plant cells is that they entirely lack centrosomes, which in animals have a major role in spindle formation. The absence of these important structures suggests that plants have evolved novel mechanisms to assure chromosome segregation. In this review, we highlight some of the recent studies on plant mitosis and argue that plants utilize a variation of "spindle self-organization" that takes advantage of the early polarity of plant cells and accentuates the role of kinetochores in stabilizing the spindle midzone in prometaphase.

Formation of Valley Networks in a Cold and Icy Early Mars Climate: Predictions for Erosion Rates and Channel Morphology

NASA Astrophysics Data System (ADS)

Cassanelli, J.

2017-12-01

Mars is host to a diverse array of valley networks, systems of linear-to-sinuous depressions which are widely distributed across the surface and which exhibit branching patterns similar to the dendritic drainage patterns of terrestrial fluvial systems. Characteristics of the valley networks are indicative of an origin by fluvial activity, providing among the most compelling evidence for the past presence of flowing liquid water on the surface of Mars. Stratigraphic and crater age dating techniques suggest that the formation of the valley networks occurred predominantly during the early geologic history of Mars ( 3.7 Ga). However, whether the valley networks formed predominantly by rainfall in a relatively warm and wet early Mars climate, or by snowmelt and episodic rainfall in an ambient cold and icy climate, remains disputed. Understanding the formative environment of the valley networks will help distinguish between these warm and cold end-member early Mars climate models. Here we test a conceptual model for channel incision and evolution under cold and icy conditions with a substrate characterized by the presence of an ice-free dry active layer and subjacent ice-cemented regolith, similar to that found in the Antarctic McMurdo Dry Valleys. We implement numerical thermal models, quantitative erosion and transport estimates, and morphometric analyses in order to outline predictions for (1) the precise nature and structure of the substrate, (2) fluvial erosion/incision rates, and (3) channel morphology. Model predictions are compared against morphologic and morphometric observational data to evaluate consistency with the assumed cold climate scenario. In the cold climate scenario, the substrate is predicted to be characterized by a kilometers-thick globally-continuous cryosphere below a 50-100 meter thick desiccated ice-free zone. Initial results suggest that, with the predicted substrate structure, fluvial channel erosion and morphology in a cold early Mars climate exposed to episodic high temperatures will not differ significantly from that in a warm climate. The fundamentally different hydrologic conditions are likely to influence other aspects of valley network morphology and morphometry including: drainage density, drainage pattern, and stream orders.

End-on soft x ray imaging of Field-Reversed Configurations (FRCs) on the Field-Reversal-C (FRX-C)/Large Scale Modification (LSM) experiment

NASA Astrophysics Data System (ADS)

Taggart, D. P.; Gribble, R. J.; Bailey, A. D., III; Sugimoto, S.

Recently, a prototype soft x ray pinhole camera was fielded on FRX-C/LSM at Los Alamos and TRX at Spectra Technology. The soft x ray FRC images obtained using this camera stand out in high contrast to their surroundings. It was particularly useful for studying the FRC during and shortly after formation when, at certain operating conditions, flute-like structures at the edge and internal structures of the FRC were observed which other diagnostics could not resolve. Building on this early experience, a new soft x ray pinhole camera was installed on FRX-C/LSM, which permits more rapid data acquisition and briefer exposures. It will be used to continue studying FRC formation and to look for internal structure later in time which could be a signature of instability. The initial operation of this camera is summarized.

Reasons for service failure of an ÉKG-20 power shovel bogie wheel

NASA Astrophysics Data System (ADS)

Yakovleva, S. P.; Milokhin, S. E.

1985-10-01

Early failure of a bogie wheel is caused by the occurrence after heat treatment of a working surface structure with insufficient resistance to plastic deformation, which under the specific conditions of contact loading causes flattening of it with the formation of accumulations of material on the side surfaces. This leads to the occurrence of significant stresses on the faces of the wheel which intensify the nonuniformity of the structure obtained after machining of the side surface.

Genome-wide network analysis of Wnt signaling in three pediatric cancers

NASA Astrophysics Data System (ADS)

Bao, Ju; Lee, Ho-Jin; Zheng, Jie J.

2013-10-01

Genomic structural alteration is common in pediatric cancers, and analysis of data generated by the Pediatric Cancer Genome Project reveals such tumor-related alterations in many Wnt signaling-associated genes. Most pediatric cancers are thought to arise within developing tissues that undergo substantial expansion during early organ formation, growth and maturation, and Wnt signaling plays an important role in this development. We examined three pediatric tumors--medullobastoma, early T-cell precursor acute lymphoblastic leukemia, and retinoblastoma--that show multiple genomic structural variations within Wnt signaling pathways. We mathematically modeled this pathway to investigate the effects of cancer-related structural variations on Wnt signaling. Surprisingly, we found that an outcome measure of canonical Wnt signaling was consistently similar in matched cancer cells and normal cells, even in the context of different cancers, different mutations, and different Wnt-related genes. Our results suggest that the cancer cells maintain a normal level of Wnt signaling by developing multiple mutations.

Hippocampal Plasticity During the Progression of Alzheimer’s disease

PubMed Central

Mufson, Elliott J.; Mahady, Laura; Waters, Diana; Counts, Scott E.; Perez, Sylvia E.; DeKosky, Steven; Ginsberg, Stephen D.; Ikonomovic, Milos D.; Scheff, Stephen; Binder, Lester

2015-01-01

Neuroplasticity involves molecular changes in central nervous system (CNS) synaptic structure and function throughout life. The concept of neural organization allows for synaptic remodeling as a compensatory mechanism to the early pathobiology of Alzheimer’s disease (AD) in an attempt to maintain brain function and cognition during the onset of dementia. The hippocampus, a crucial component of the medial temporal lobe memory circuit, is affected early in AD and displays synaptic and intraneuronal molecular remodeling against a pathological background of extracellular amyloid-beta (Aβ) deposition and intracellular neurofibrillary tangle (NFT) formation in the early stages of AD. Here we discuss human clinical pathological findings supporting the concept that the hippocampus is capable of neural plasticity during mild cognitive impairment (MCI), a prodromal stage of AD and early stage AD. PMID:25772787

Early type galaxies: Mapping out the two-dimensional space of galaxy star formation histories

NASA Astrophysics Data System (ADS)

Graves, Genevieve J.

Early type galaxies form a multi-parameter family, as evidenced by the two- dimensional (2-D) Fundamental Plane relationship. However, their star formation histories are often treated as a one-dimensional mass sequence. This dissertation presents a systematic study of the relationship between the multi- parameter structural properties of early type galaxies and their star formation histoires. We demonstrate that the stellar populations of early type galaxies span a 2-D space, which means that their star formation histories form a two- parameter family. This 2-D family is then mapped onto several familiar early type galaxy scaling relations, including the color-magnitude relation, the Fundamental Plane, and a cross-section through the Fundamental Plane. We find that the stellar population properties, and therefore the star formation histories of early type galaxies depend most strongly on galaxy velocity dispersion (s), rather than on luminosity ( L ), stellar mass ( M [low *] ), or dynamical mass ( M dyn ). Interestingly, stellar populations are independent of the radius ( R e ) of the galaxies. At fixed s, they show correlated residuals through the thickness of the Fundamental Plane (FP) in the surface-brightness ( I e ) dimension, such that low-surface-brightness galaxies are older, less metal-enriched, and more enhanced in Mg relative to Fe than their counterparts at the same s and R e on the FP midplane. Similarly, high- surface-brightness galaxies are younger, more metal-rich, and less Mg-enhanced than their counterparts on the FP midplane. These differences suggest that the duration of star formation varies through the thickness of the FP. If the dynamical mass-to-light ratios of early type galaxies ( M dyn /L ) were constant for all such galaxies, the FP would be equivalent to the plane predicted by the virial relation. However, the observed FP does not exactly match the virial plane. The FP is tilted from the virial plane, indicating that M dyn /L varies systematically across it. Furthermore the FP relation, although relatively tight, shows more scatter in surface brightness (at fixed s and R e ) than is predicted by observational errors. This finite thickness indicates that M dyn /L also varies at a fixed point on the FP. We observe that the stellar populations of early type galaxies vary through the thickness of the FP. These differences translate into variations in the stellar mass-to-light ratio ( M [low *] /L ) that contribute to both the tilt and the thickness of the FP. However, the mass-to-light variations due to stellar population differences are too small to explain either the tilt of the FP or its thickness. This implies that the tilt and thickness of the FP are driven by systematic variations in either the central dark matter fraction in galaxies or in the IMF with which they form stars. Furthermore, because star formation histories can be mapped onto locations in FP-space, the variations in central dark matter fraction or IMF differences must be correlated with differences in the galaxies' star formation histories.

Formation mechanism of Ruddlesden-Popper-type antiphase boundaries during the kinetically limited growth of Sr rich SrTiO3 thin films

PubMed Central

Xu, Chencheng; Du, Hongchu; van der Torren, Alexander J. H.; Aarts, Jan; Jia, Chun-Lin; Dittmann, Regina

2016-01-01

We elucidated the formation process for Ruddlesden-Popper-type defects during pulsed laser deposition of Sr rich SrTiO3 thin films by a combined analysis of in-situ atomic force microscopy, low energy electron diffraction and high resolution scanning transmission electron microscopy. At the early growth stage of 1.5 unit cells, the excess Sr results in the formation of SrO on the surface, resulting in a local termination change from TiO2 to SrO, thereby forming a Sr rich (2 × 2) surface reconstruction. With progressive SrTiO3 growth, islands with thermodynamically stable SrO rock-salt structure are formed, coexisting with TiO2 terminated islands. During the overgrowth of these thermodynamically stable islands, both lateral as well as vertical Ruddlesden-Popper-type anti-phase boundaries are formed, accommodating the Sr excess of the SrTiO3 film. We suggest the formation of thermodynamically stable SrO rock-salt structures as origin for the formation of Ruddlesden-Popper-type antiphase boundaries, which are as a result of kinetic limitations confined to certain regions on the surface. PMID:27922069

Formation mechanism of Ruddlesden-Popper-type antiphase boundaries during the kinetically limited growth of Sr rich SrTiO3 thin films

NASA Astrophysics Data System (ADS)

Xu, Chencheng; Du, Hongchu; van der Torren, Alexander J. H.; Aarts, Jan; Jia, Chun-Lin; Dittmann, Regina

2016-12-01

We elucidated the formation process for Ruddlesden-Popper-type defects during pulsed laser deposition of Sr rich SrTiO3 thin films by a combined analysis of in-situ atomic force microscopy, low energy electron diffraction and high resolution scanning transmission electron microscopy. At the early growth stage of 1.5 unit cells, the excess Sr results in the formation of SrO on the surface, resulting in a local termination change from TiO2 to SrO, thereby forming a Sr rich (2 × 2) surface reconstruction. With progressive SrTiO3 growth, islands with thermodynamically stable SrO rock-salt structure are formed, coexisting with TiO2 terminated islands. During the overgrowth of these thermodynamically stable islands, both lateral as well as vertical Ruddlesden-Popper-type anti-phase boundaries are formed, accommodating the Sr excess of the SrTiO3 film. We suggest the formation of thermodynamically stable SrO rock-salt structures as origin for the formation of Ruddlesden-Popper-type antiphase boundaries, which are as a result of kinetic limitations confined to certain regions on the surface.

Early-Type Galaxy Star Formation Histories in Different Environments

NASA Astrophysics Data System (ADS)

Fitzpatrick, Patrick; Graves, G.

2014-01-01

We use very high-S/N stacked spectra of ˜29,000 nearby quiescent early-type galaxies (ETGs) from the Sloan Digital Sky Survey (SDSS) to investigate variations in their star formation histories (SFHs) with environment at fixed position along and perpendicular to the Fundamental Plane (FP). We separate galaxies in the three-dimensional FP space defined by galaxy effective radius Re, central stellar velocity dispersion σ, and surface brightness residual from the FP, ΔIe. We use the SDSS group catalogue of Yang et al. to further separate galaxies into three categories by their “identities” within their respective dark matter halos: central “Brightest Group Galaxies” (BGGs); Satellites; and Isolateds (those which are “most massive” in a dark matter halo with no Satellites). Within each category, we construct high-S/N mean stacked spectra to determine mean singleburst ages, [Fe/H], and [Mg/Fe] based on the stellar population synthesis models of R. Schiavon. This allows us to study variations in the stellar population properties (SPPs) with local group environment at fixed structure (i.e., fixed position in FP-space). We find that the SFHs of quiescent ETGs are almost entirely determined by their structural parameters σ and ΔIe. Any variation with local group environment at fixed structure is only slight: Satellites have the oldest stellar populations, 0.02 dex older than BGGs and 0.04 dex older than Isolateds; BGGs have the highest Fe-enrichments, 0.01 dex higher than Isolateds and 0.02 dex higher than Satellites; there are no differences in Mg-enhancement between BGGs, Isolateds, and Satellites. Our observation that, to zeroth-order, the SFHs of quiescent ETGs are fully captured by their structures places important qualitative constraints on the degree to which late-time evolutionary processes (those which occur after a galaxy’s initial formation and main star-forming lifetime) can alter their SFHs/structures.

Bacterialike (filamentous) structures associated with pyritized burrow linings, Arnheim Formation (Upper Ordovician), southeastern Indiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blackwell, W.H.; Martin, A.J.

Much naturally occurring pyritization is biologically mediated, with specific types of bacteria (sulfate reducers) promoting the reactions. Among the criteria required for pyritization in a marine environment are the presence of: (1) interstitial iron ions, (2) a primarily anaerobic (reducing) environment; (3) an organic-rich substrate, and (4) sulfate-reducing bacteria (releasing sulfide). However, the direct connection between pyritization and bacteria (microfloral remains) is difficult to visualize in the fossil record. This study focuses specifically on pyritized burrow linings that occur in strongly bioturbated wackestones from the Arnheim Formation (Cincinnatian Series, Upper Ordovician). Specific reducing microenvironments (i.e. mucoidal burrow linings) were themore » sites of early diagenetic pyritization in otherwise oxygenated, organic-rich sediments. Material examined under both the light and electron microscopes revealed occasional evidence of pyrite associated with filamentous structures. These structures possess a shape and size consistent with certain types of bacteria. This relationship, bacterialike structures with pyrite, may be more common in the fossil record than previously suspected.« less

Sedimentary and tectonic history of the Holowilena Ironstone, a Neoproterozoic iron formation in South Australia

NASA Astrophysics Data System (ADS)

Lechte, Maxwell Alexander; Wallace, Malcolm William

2015-11-01

The Holowilena Ironstone is a Neoproterozoic iron formation in South Australia associated with glacial deposits of the Sturtian glaciation. Through a comprehensive field study coupled with optical and scanning electron microscopy, X-ray fluorescence, and X-ray diffraction, a detailed description of the stratigraphy, sedimentology, mineralogy, and structure of the Holowilena Ironstone was obtained. The Holowilena Ironstone comprises ferruginous shales, siltstones, diamictites, and is largely made up of hematite and jasper, early diagenetic replacement minerals of precursor iron oxyhydroxides, and silica. These chemical precipitates are variably influenced by turbidites and debris flows contributing clastic detritus to the depositional system. Structural and stratigraphic evidence suggests deposition within a synsedimentary half-graben. A model for the Holowilena Ironstone is proposed, in which dense oxic fluids expelled during sea ice formation in the Cryogenian pool in the depression of the half-graben, allowing for long-lived mixing with the ferruginous seawater and the deposition of iron oxides. This combination of glacial dynamics, tectonism, and ocean chemistry may explain the return of iron formations in the Neoproterozoic.

Structures of SAS-6 suggest its organization in centrioles.

PubMed

van Breugel, Mark; Hirono, Masafumi; Andreeva, Antonina; Yanagisawa, Haru-aki; Yamaguchi, Shoko; Nakazawa, Yuki; Morgner, Nina; Petrovich, Miriana; Ebong, Ima-Obong; Robinson, Carol V; Johnson, Christopher M; Veprintsev, Dmitry; Zuber, Benoît

2011-03-04

Centrioles are cylindrical, ninefold symmetrical structures with peripheral triplet microtubules strictly required to template cilia and flagella. The highly conserved protein SAS-6 constitutes the center of the cartwheel assembly that scaffolds centrioles early in their biogenesis. We determined the x-ray structure of the amino-terminal domain of SAS-6 from zebrafish, and we show that recombinant SAS-6 self-associates in vitro into assemblies that resemble cartwheel centers. Point mutations are consistent with the notion that centriole formation in vivo depends on the interactions that define the self-assemblies observed here. Thus, these interactions are probably essential to the structural organization of cartwheel centers.

Generation of structures formed by lens and retinal cells differentiating from embryonic stem cells.

PubMed

Hirano, Mariko; Yamamoto, Akitsugu; Yoshimura, Naoko; Tokunaga, Tomoyuki; Motohashi, Tsutomu; Ishizaki, Katsuhiko; Yoshida, Hisahiro; Okazaki, Kenji; Yamazaki, Hidetoshi; Hayashi, Shin-Ichi; Kunisada, Takahiro

2003-12-01

Embryonic stem cells have the potential to give rise to all cell lineages when introduced into the early embryo. They also give rise to a limited number of different cell types in vitro in specialized culture systems. In this study, we established a culture system in which a structure consisting of lens, neural retina, and pigmented retina was efficiently induced from embryonic stem cells. Refractile cell masses containing lens and neural retina were surrounded by retinal pigment epithelium layers and, thus, designated as eye-like structures. Developmental processes required for eye development appear to proceed in this culture system, because the formation of the eye-like structures depended on the expression of Pax6, a key transcription factor for eye development. The present culture system opens up the possibility of examining early stages of eye development and also of producing cells for use in cellular therapy for various diseases of the eye. Copyright 2003 Wiley-Liss, Inc.

Provenance of Carboniferous sedimentary rocks in the northern margin of Dabie Mountains, central China and the tectonic significance: constraints from trace elements, mineral chemistry and SHRIMP dating of zircons

NASA Astrophysics Data System (ADS)

Li, Renwei; Li, Shuangying; Jin, Fuquan; Wan, Yusheng; Zhang, Shukun

2004-04-01

A suite of slightly metamorphosed Carboniferous sedimentary strata occurs in the northern margin of the Dabie Mountains, central China. It consists, in ascending order, of the upper Huayuanqiang Formation (C 1), the Yangshan Formation (C 1), the Daorenchong Formation (C 1-2), the most widely distributed Huyoufang Formation (C 2) and the Yangxiaozhuang Formation (C 2). The provenance of the Carboniferous sedimentary rocks is constrained by the integration of trace elements, detrital mineral chemistry and sensitive high resolution ion microprobe (SHRIMP) dating of detrital zircons, which can help to understand the connection between the provenance and the Paleozoic tectonic evolution of the Qinling-Dabie Orogen. The trace element compositions indicate that the source terrain was probably a continental island arc. Detrital tourmalines were mainly derived from aluminous and Al-poor metapelites and metapsammites, and some are sourced from Li-poor granitoids, pegmatites and aplites. Detrital garnets, found only in the uppermost Huyoufang Formation, are almandine and Mn-almandine garnets, indicating probable sources mainly from garnetiferous schists, and partly from granitoid rocks. The detrital white K-micas are muscovitic in the Huayuanqiang, Daorenchong and Huyoufang Formations, and phengitic with Si contents (p.f.u.) from 3.20 up to max. 3.47-3.53 in the uppermost Huyoufang and the Yangxiaozhuang Formations, a meta-sedimentary source. Major components in the detrital zircon age structure for the Huyoufang Formation range from 506 to 363 Ma, centering on ˜400 and ˜480 Ma, which is characteristic of the Qinling and Erlangping Groups in the Qinling and Tongbai Mountains, central China. Evidently, the major source of the Carboniferous sedimentary rocks in the northern margin of Dabie Mountains was from the southern margin of the Sino-Korean Craton represented by the Qinling and Erlangping Groups. The source area was an island-arc system during the Early Paleozoic that collided with the Sino-Korea plate towards the end of the Early Paleozoic or during the Devonian. A prominent feature in the detrital zircon age structure of the Huyoufang Formation is the Neoproterozoic detritus, which could be derived only from the Yangtze Craton. Reasonable interpretation of the two distinct source materials for the Huyoufang Formation is that the two plates were juxtaposed through collision before the late Carboniferous.

Visualization of soil structure and pore structure modifications by pioneering ground beetles (Cicindelidae) in surface sediments of an artificial catchment

NASA Astrophysics Data System (ADS)

Badorreck, Annika; Gerke, Horst H.; Weller, Ulrich; Vontobel, Peter

2010-05-01

An artificial catchment was constructed to study initial soil and ecosystem development. As a key process, the pore structure dynamics in the soil at the surface strongly influences erosion, infiltration, matter dynamics, and vegetation establishment. Little is known, however, about the first macropore formation in the very early stage. This presentation focuses on observations of soil pore geometry and its effect on water flow at the surface comparing samples from three sites in the catchment and in an adjacent "younger" site composed of comparable sediments. The surface soil was sampled in cylindrical plastic rings (10 cm³) down to 2 cm depth in three replicates each site and six where caves from pioneering ground-dwelling beetles Cicindelidae were found. The samples were scanned with micro-X-ray computed tomography (at UFZ-Halle, Germany) with a resolution of 0.084 mm. The infiltration dynamics were visualized with neutronradiography (at Paul-Scherer-Institute, Switzerland) on slab-type soil samples in 2D. The micro-tomographies exhibit formation of surface sealing whose thickness and intensity vary with silt and clay content. The CT images show several coarser- and finer-textured micro-layers at the sample surfaces that were formed as a consequence of repeated washing in of finer particles in underlying coarser sediment. In micro-depressions, the uppermost layers consist of sorted fine sand and silt due to wind erosion. Similar as for desert pavements, a vesicular pore structure developed in these sediments on top, but also scattered in fine sand- and silt-enriched micro-layers. The ground-dwelling activity of Cicindelidae beetles greatly modifies the soil structure through forming caves in the first centimetres of the soil. Older collapsed caves, which form isolated pores within mixed zones, were also found. The infiltration rates were severely affected both, by surface crusts and activity of ground-dwelling beetles. The observations demonstrate relatively high abiotic and biotic dynamics of soil pore structure in the soil surface even during the very early development stages. The structure formation has potentially great effects on changing runoff and infiltration by forming sealing layers or preferential flow paths.

The Late Devonian Gogo Formation Lägerstatte of Western Australia: Exceptional Early Vertebrate Preservation and Diversity

NASA Astrophysics Data System (ADS)

Long, John A.; Trinajstic, Kate

2010-05-01

The Gogo Formation of Western Australia preserves a unique Late Devonian (Frasnian) reef fauna. The exceptional three-dimensional preservation of macrofossils combined with unprecedented soft-tissue preservation (including muscle bundles, nerve cells, and umbilical structures) has yielded a particularly rich assemblage with almost 50 species of fishes described. The most significant discoveries have contributed to resolving placoderm phylogeny and elucidating their reproductive physiology. Specifically, these discoveries have produced data on the oldest known vertebrate embryos; the anatomy of the primitive actinopterygian neurocranium and phylogeny of the earliest actinopterygians; the histology, radiation, and plasticity of dipnoan (lungfish) dental and cranial structures; the anatomy and functional morphology of the extinct onychodonts; and the anatomy of the primitive tetrapodomorph head and pectoral fin.

Correlation of surface site formation to nanoisland growth in the electrochemical roughening of Pt(111)

NASA Astrophysics Data System (ADS)

Jacobse, Leon; Huang, Yi-Fan; Koper, Marc T. M.; Rost, Marcel J.

2018-03-01

Platinum plays a central role in a variety of electrochemical devices and its practical use depends on the prevention of electrode degradation. However, understanding the underlying atomic processes under conditions of repeated oxidation and reduction inducing irreversible surface structure changes has proved challenging. Here, we examine the correlation between the evolution of the electrochemical signal of Pt(111) and its surface roughening by simultaneously performing cyclic voltammetry and in situ electrochemical scanning tunnelling microscopy (EC-STM). We identify a `nucleation and early growth' regime of nanoisland formation, and a `late growth' regime after island coalescence, which continues up to at least 170 cycles. The correlation analysis shows that each step site that is created in the `late growth' regime contributes equally strongly to both the electrochemical and the roughness evolution. In contrast, in the `nucleation and early growth' regime, created step sites contribute to the roughness, but not to the electrochemical signal.

Characterization of xylan in the early stages of secondary cell wall formation in tobacco bright yellow-2 cells.

PubMed

Ishii, Tadashi; Matsuoka, Keita; Ono, Hiroshi; Ohnishi-Kameyama, Mayumi; Yaoi, Katsuro; Nakano, Yoshimi; Ohtani, Misato; Demura, Taku; Iwai, Hiroaki; Satoh, Shinobu

2017-11-15

The major polysaccharides present in the primary and secondary walls surrounding plant cells have been well characterized. However, our knowledge of the early stages of secondary wall formation is limited. To address this, cell walls were isolated from differentiating xylem vessel elements of tobacco bright yellow-2 (BY-2) cells induced by VASCULAR-RELATED NAC-DOMAIN7 (VND7). The walls of induced VND7-VP16-GR BY-2 cells consisted of cellulose, pectic polysaccharides, hemicelluloses, and lignin, and contained more xylan and cellulose compared with non-transformed BY-2 and uninduced VND7-VP16-GR BY-2 cells. A reducing end sequence of xylan containing rhamnose and galaturonic acid- residues is present in the walls of induced, uninduced, and non-transformed BY-2 cells. Glucuronic acid residues in xylan from walls of induced cells are O-methylated, while those of xylan in non-transformed BY-2 and uninduced cells are not. Our results show that xylan changes in chemical structure and amounts during the early stages of xylem differentiation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Microbially Induced Sedimentary Structures Recording an Ancient Ecosystem in the ca. 3.48 Billion-Year-Old Dresser Formation, Pilbara, Western Australia

PubMed Central

Christian, Daniel; Wacey, David; Hazen, Robert M.

2013-01-01

Abstract Microbially induced sedimentary structures (MISS) result from the response of microbial mats to physical sediment dynamics. MISS are cosmopolitan and found in many modern environments, including shelves, tidal flats, lagoons, riverine shores, lakes, interdune areas, and sabkhas. The structures record highly diverse communities of microbial mats and have been reported from numerous intervals in the geological record up to 3.2 billion years (Ga) old. This contribution describes a suite of MISS from some of the oldest well-preserved sedimentary rocks in the geological record, the early Archean (ca. 3.48 Ga) Dresser Formation, Western Australia. Outcrop mapping at the meter to millimeter scale defined five sub-environments characteristic of an ancient coastal sabkha. These sub-environments contain associations of distinct macroscopic and microscopic MISS. Macroscopic MISS include polygonal oscillation cracks and gas domes, erosional remnants and pockets, and mat chips. Microscopic MISS comprise tufts, sinoidal structures, and laminae fabrics; the microscopic laminae are composed of primary carbonaceous matter, pyrite, and hematite, plus trapped and bound grains. Identical suites of MISS occur in equivalent environmental settings through the entire subsequent history of Earth including the present time. This work extends the geological record of MISS by almost 300 million years. Complex mat-forming microbial communities likely existed almost 3.5 billion years ago. Key Words: Archean—Biofilms—Microbial mats—Early Earth—Evolution. Astrobiology 13, 1103–1124. PMID:24205812

Self-Organization of Stem Cell Colonies and of Early Mammalian Embryos: Recent Experiments Shed New Light on the Role of Autonomy vs. External Instructions in Basic Body Plan Development

PubMed Central

Denker, Hans-Werner

2016-01-01

“Organoids”, i.e., complex structures that can develop when pluripotent or multipotent stem cells are maintained in three-dimensional cultures, have become a new area of interest in stem cell research. Hopes have grown that when focussing experimentally on the mechanisms behind this type of in vitro morphogenesis, research aiming at tissue and organ replacements can be boosted. Processes leading to the formation of organoids in vitro are now often addressed as self-organization, a term referring to the formation of complex tissue architecture in groups of cells without depending on specific instruction provided by other cells or tissues. The present article focuses on recent reports using the term self-organization in the context of studies on embryogenesis, specifically addressing pattern formation processes in human blastocysts attaching in vitro, or in colonies of pluripotent stem cells (“gastruloids”). These morphogenetic processes are of particular interest because, during development in vivo, they lead to basic body plan formation and individuation. Since improved methodologies like those employed by the cited authors became available, early embryonic pattern formation/self-organization appears to evolve now as a research topic of its own. This review discusses concepts concerning the involved mechanisms, focussing on autonomy of basic body plan development vs. dependence on external signals, as possibly provided by implantation in the uterus, and it addresses biological differences between an early mammalian embryo, e.g., a morula, and a cluster of pluripotent stem cells. It is concluded that, apart from being of considerable biological interest, the described type of research needs to be contemplated carefully with regard to ethical implications when performed with human cells. PMID:27792143

Self-Organization of Stem Cell Colonies and of Early Mammalian Embryos: Recent Experiments Shed New Light on the Role of Autonomy vs. External Instructions in Basic Body Plan Development.

PubMed

Denker, Hans-Werner

2016-10-25

" Organoids ", i.e., complex structures that can develop when pluripotent or multipotent stem cells are maintained in three-dimensional cultures, have become a new area of interest in stem cell research. Hopes have grown that when focussing experimentally on the mechanisms behind this type of in vitro morphogenesis, research aiming at tissue and organ replacements can be boosted. Processes leading to the formation of organoids in vitro are now often addressed as self-organization , a term referring to the formation of complex tissue architecture in groups of cells without depending on specific instruction provided by other cells or tissues. The present article focuses on recent reports using the term self-organization in the context of studies on embryogenesis , specifically addressing pattern formation processes in human blastocysts attaching in vitro, or in colonies of pluripotent stem cells (" gastruloids "). These morphogenetic processes are of particular interest because, during development in vivo, they lead to basic body plan formation and individuation. Since improved methodologies like those employed by the cited authors became available, early embryonic pattern formation/self-organization appears to evolve now as a research topic of its own. This review discusses concepts concerning the involved mechanisms, focussing on autonomy of basic body plan development vs. dependence on external signals, as possibly provided by implantation in the uterus, and it addresses biological differences between an early mammalian embryo, e.g., a morula, and a cluster of pluripotent stem cells. It is concluded that, apart from being of considerable biological interest, the described type of research needs to be contemplated carefully with regard to ethical implications when performed with human cells.

Geologic?l History of E?st Siberi?n Se? Shelf

ERIC Educational Resources Information Center

Safronov, Aleksandr F.

2016-01-01

In our study we discuss the traditional and novel concepts of East Siberian Shelf origin with regards to the structure and composition of the Paleozoic and early Mesozoic sediments, coming to the surface on the Siberian Islands ?rchipel?go. The core idea is to summarize the existing concepts of East Siberian Shelf formation and to draw up the…

Parents' Experiences of Home-Based Applied Behavior Analysis Programs for Young Children with Autism

ERIC Educational Resources Information Center

Grindle, Corinna F.; Kovshoff, Hanna; Hastings, Richard P.; Remington, Bob

2009-01-01

Although much research has documented the benefits to children with autism of early intensive behavioral intervention (EIBI), little has focused on the impact of EIBI on families. Using a semi-structured format, we interviewed 53 parents whose children had received 2 years of EIBI to obtain detailed first person accounts of the perceived benefits…

Petrology and sedimentology of the Horlick Formation (Lower Devonian), Ohio Range, Transantarctic Mountains

USGS Publications Warehouse

McCartan, Lucy; Bradshaw, Margaret A.

1987-01-01

The Horlick Formation of Early Devonian age is as thick as 50 m and consists of subhorizontal, interbedded subarkosic sandstone and chloritic shale and mudstone. The Horlick overlies an erosion surface cut into Ordovician granitic rocks and is, in turn, overlain by Carboniferous and Permian glacial and periglacial deposits. Textures, sedimentary structures, and ubiquitous marine body fossils and animal traces suggest that the Horlick was deposited on a shallow shelf having moderate wave energy and a moderate tidal range. The source terrane probably lay to the north, and longshore transport was toward the west.

Hydrogen-Bond Driven Loop-Closure Kinetics in Unfolded Polypeptide Chains

PubMed Central

Daidone, Isabella; Neuweiler, Hannes; Doose, Sören; Sauer, Markus; Smith, Jeremy C.

2010-01-01

Characterization of the length dependence of end-to-end loop-closure kinetics in unfolded polypeptide chains provides an understanding of early steps in protein folding. Here, loop-closure in poly-glycine-serine peptides is investigated by combining single-molecule fluorescence spectroscopy with molecular dynamics simulation. For chains containing more than 10 peptide bonds loop-closing rate constants on the 20–100 nanosecond time range exhibit a power-law length dependence. However, this scaling breaks down for shorter peptides, which exhibit slower kinetics arising from a perturbation induced by the dye reporter system used in the experimental setup. The loop-closure kinetics in the longer peptides is found to be determined by the formation of intra-peptide hydrogen bonds and transient β-sheet structure, that accelerate the search for contacts among residues distant in sequence relative to the case of a polypeptide chain in which hydrogen bonds cannot form. Hydrogen-bond-driven polypeptide-chain collapse in unfolded peptides under physiological conditions found here is not only consistent with hierarchical models of protein folding, that highlights the importance of secondary structure formation early in the folding process, but is also shown to speed up the search for productive folding events. PMID:20098498

Field spheroid-dominated galaxies in a Λ-CDM Universe

NASA Astrophysics Data System (ADS)

Rosito, M. S.; Pedrosa, S. E.; Tissera, P. B.; Avila-Reese, V.; Lacerna, I.; Bignone, L. A.; Ibarra-Medel, H. J.; Varela, S.

2018-06-01

Context. Understanding the formation and evolution of early-type, spheroid-dominated galaxies is an open question within the context of the hierarchical clustering scenario, particularly in low-density environments. Aims: Our goal is to study the main structural, dynamical, and stellar population properties and assembly histories of field spheroid-dominated galaxies formed in a Λ-cold dark matter (Λ-CDM) scenario to assess to what extent they are consistent with observations. Methods: We selected spheroid-dominated systems from a Λ-CDM simulation that includes star formation (SF), chemical evolution, and supernova feedback. The sample is made up of 18 field systems with MStar ≲ 6 × 1010M⊙ that are dominated by the spheroid component. For this sample we estimated the fundamental relations of ellipticals and compared them with current observations. Results: The simulated spheroid galaxies have sizes that are in good agreement with observations. The bulges follow a Sersic law with Sersic indexes that correlate with the bulge-to-total mass ratios. The structural-dynamical properties of the simulated galaxies are consistent with observed Faber-Jackson, fundamental plane, and Tully-Fisher relations. However, the simulated galaxies are bluer and with higher star formation rates (SFRs) than the observed isolated early-type galaxies. The archaeological mass growth histories show a slightly delayed formation and more prominent inside-out growth mode than observational inferences based on the fossil record method. Conclusions: The main structural and dynamical properties of the simulated spheroid-dominated galaxies are consistent with observations. This is remarkable since our simulation has not been calibrated to match them. However, the simulated galaxies are blue and star-forming, and with later stellar mass growth histories compared to observational inferences. This is mainly due to the persistence of extended discs in the simulations. The need for more efficient quenching mechanisms able to avoid further disc growth and SF is required in order to reproduce current observational trends.

Trajectories of Identity Formation Modes and Their Personality Context in Adolescence.

PubMed

Topolewska-Siedzik, Ewa; Cieciuch, Jan

2018-04-01

Identity formation is a dynamic process during adolescence. Trajectories of identity formation were assessed longitudinally in early and middle adolescents, taking into account the personality underpinnings of this process. Identity formation was conceptualized according to the circumplex of identity formation modes. The model distinguishes basic modes rooted in Marcia's categories of exploration and commitment. Plasticity and stability, the two higher order Big Five meta-traits, were used to assess personality underpinnings. This study includes five measurement waves over 1.5 years and involves 1,839 Polish participants; 914 early adolescents (53.9% girls) and 925 middle adolescents (63.8% girls). The results suggest that (1) the four identity formation modes change dynamically, showing linear and curvilinear growth and that (2) identity formation mode trajectories are more dynamic in middle adolescence than in early adolescence. The results also showed that, in the conditional model, (3) the higher-order personality factors and gender affect the growth factors of identity formation modes. Overall, trajectories of identity formation modes are more linear during early adolescence and more curvilinear during middle adolescence. The initial levels in identity trajectories are influenced by the personality metatraits but only plasticity is related to change among early adolescents.

Functional morphology of mouthparts and digestive system during larval development of the cleaner shrimp Lysmata amboinensis (de Man, 1888).

PubMed

Tziouveli, Vasiliki; Bastos Gomes, Giana; Bastos-Gomez, Giana; Bellwood, Orpha

2011-09-01

Mouthpart and alimentary canal development was examined in Lysmata amboinensis larvae using scanning electron microscopy and histology. The gross morphological features of external mouthparts and internal digestive tract structures of larvae at different developmental stages indicate that ingestive and digestive capabilities are well developed from early on. With increasing age of the larvae the mouthpart appendages increased in size, the hepatopancreas in tubular density and the midgut in length. The density of setae and robustness of teeth and spines of individual structures increased. The most pronounced changes from early to late stage larvae involved formation of pores on the paragnaths and labrum, transformation of the mandibular spine-like teeth to molar cusps, development of the filter press in the proventriculus and of infoldings in the previously straight hindgut. The results suggest that early stage L. amboinensis larvae may benefit from soft, perhaps gelatinous prey, whereas later stages are better equipped to handle larger, muscular or more fibrous foods. 2011 Wiley-Liss, Inc.

Early changes in coronary artery wall structure detected by microcomputed tomography in experimental hypercholesterolemia.

PubMed

Zhu, Xiang-Yang; Bentley, Michael D; Chade, Alejandro R; Ritman, Erik L; Lerman, Amir; Lerman, Lilach O

2007-09-01

Changes in the structure of the artery wall commence shortly after exposure to cardiovascular risk factors, such as hypercholesterolemia (HC), but may be difficult to detect. The ability to study vascular wall structure could be helpful in evaluation of the factors that instigate atherosclerosis and its pathomechanisms. The present study tested the hypothesis that early morphological changes in coronary arteries of hypercholesterolemic (HC) pigs can be detected using the novel X-ray contrast agent OsO(4) and three-dimensional micro-computed tomography (CT). Two groups of pigs were studied after they were fed a normal or an HC (2% cholesterol) diet for 12 wk. Hearts were harvested, coronary arteries were injected with 1% OsO(4) solution, and cardiac samples (6-mum-thick) were scanned by micro-CT. Layers of the epicardial coronary artery wall, early lesions, and perivascular OsO(4) accumulation were determined. Leakage of OsO(4) from myocardial microvessels was used to assess vascular permeability, which was correlated with immunoreactivity of vascular endothelial growth factor in corresponding histological cross sections. OsO(4) enhanced the visualization of coronary artery wall layers and facilitated detection of early lesions in HC in longitudinal tomographic sections of vascular segments. Increased density of perivascular OsO(4) in HC was correlated with increased vascular endothelial growth factor expression and suggested increased microvascular permeability. The use of OsO(4) as a contrast agent in micro-CT allows three-dimensional visualization of coronary artery wall structure, early lesion formation, and changes in vascular permeability. Therefore, this technique can be a useful tool in atherosclerosis research.

UNDERSTANDING THE STRUCTURE OF THE HOT INTERSTELLAR MEDIUM IN NORMAL EARLY-TYPE GALAXIES.

NASA Astrophysics Data System (ADS)

Traynor, Liam; Kim, Dong-Woo; Chandra Galaxy Atlas

2018-01-01

The hot interstellar medium (ISM) of early-type galaxies (ETG's) provides crucial insight into the understanding of their formation and evolution. Mechanisms such as type Ia supernovae heating, AGN feedback, deepening potential depth through dark matter assembly and ramp-pressure stripping are known to affect the structure of the ISM. By using temperature maps and radial temperature profiles of the hot ISM from ~70 ETG's with archival Chandra data, it is possible to classify the galaxy's ISM into common structural types. This is extended by using 3D fitting of the radial temperature profile in order to provide models that further constrain the structural types. Five structural types are present, negative (temperature decreases with radii), positive (temperature increases with radii), hybrid-dip (temperature decreases at small radii and increases at large radii), hybrid-bump (inverse of hybrid-dip) and quasi-isothermal (temperature is constant at all radii). This work will be continued by 1) determining which mechanisms are present in which galaxies and 2) analysing the model parameters between galaxies within each structural type to determine whether each type can be described by a single set of model parameters, indicating that the same physical processes are responsible for creating that structural type.

Some Characteristics of Current Star Formation in the 30 Doradus Nebula Revealed by HST/NICMOS

NASA Astrophysics Data System (ADS)

Walborn, Nolan R.; Barbá, Rodolfo H.; Brandner, Wolfgang; Rubio, Mónica; Grebel, Eva K.; Probst, Ronald G.

1999-01-01

The extensive ``second generation'' of star formation within the 30 Doradus Nebula, evidently triggered by the R136 central cluster around its periphery, has been imaged with the Near-Infrared Camera and Multi-Object Spectrometer (NICMOS) on the Hubble Space Telescope. Many new IR sources, including multiple systems, clusters, and nebular structures, are found in these images. Six of the NICMOS fields are described here, in comparison with the WFPC2 images of the same fields. Knots 1-3 of Walborn & Blades (early O stars embedded in dense nebular knots) are all found to be compact multiple systems. Knot 1 is shown to reside at the top of a massive dust pillar oriented directly toward R136, whose summit has just been removed, exposing the newborn stellar system. Knots 1 and 3 are also near the brightest IR sources in the region, while parsec-scale jet structures are discovered in association with Knots 2 and 3. The Knot 2 structures consist of detached, nonstellar IR sources aligned on either side of the stellar system, which are interpreted as impact points of a highly collimated, possibly rotating bipolar jet on the surrounding dark clouds; the H_2O maser found by Whiteoak et al. is also in this field. These outflows from young massive stars in 30 Dor are the first extragalactic examples of the phenomenon. In the field of the pillars south of R136, recently discussed in comparison with the M16 pillars by Scowen et al., a new luminous stellar IR source has been discovered. These results establish the 30 Doradus Nebula as a prime region in which to investigate the formation and very early evolution of massive stars and multiple systems. The theme of triggered formation within the heads of extensive dust pillars oriented toward R136 is strong. In addition, these results provide further insights into the global structure and evolution of 30 Doradus, which are significant in view of its status as the best resolved extragalactic starburst. This paper is dedicated to W. W. Morgan, who taught me the power of morphology to uncover new phenomena in astronomy.-N. R. W.

Studies with infections fragments of phage DNA. Final report, January 1, 1970--June 30, 1976

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schachtele, C. F.

The minute, virulent and structurally intricate Bacillus subtilis bacteriophage phi 29 was utilized to study in vivo viral development. Purified strands of phi 29 DNA were used to analyze transcription of the viral genome. Early mRNA hybridizes to the light DNA strand which controls DNA replication and other early functions. Late mRNA hybridizes to the heavy DNA strand which codes for phage structural proteins. The temporal sequence of specific viral protein synthesis was analyzed by gel electrophoresis and was shown to directly correlate with the RNA transcription pattern. The genes carried by phi 29 have been marked with ts andmore » sus mutations and mapped by appropriate crosses yielding a linear map of 17 cistrons. Fragments of the phi 29 DNA were shown to retain their biological activity and marker rescue studies indicated that gene transfer could be performed with pieces having a molecular weight of less than 1 million daltons. Mutant infection under nonpermissive conditions and the analysis of precursor structures has allowed the formation of a tentative morphogenetic pathway leading to the formation of infectious particles. Work with phi 29 has established this virus as an advantageous model system for studying a variety of problems in molecular biology and approximately a dozen laboratories in the country and abroad are working with this phage.« less

Hydrocarbons related to early Cretaceous source rocks, reservoirs and seals, trapped in northeastern Neuqun basin, Argentina

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulisano, C.; Minniti, S.; Rossi, G.

1996-08-01

The Jurassic-Cretaceous backarc Neuqun Basin, located in the west central part of Argentina, is currently the most prolific oil basin of the country. The primary objective of this study is to evaluate an Early Cretaceous to Tertiary petroleum system in the northeastern portion of the basin, where oil and gas occurrences (e.g., Puesto Hernandez, Chihuido de la Sierra Negra, El Trapial and Filo Morado oil fields, among others) provide 82 MMBO/yr comprising 67% of the basin oil production and 31% of Argentina. The source rocks are represented by two thick sections of basinal kerogen type I and II organic-rich shales,more » deposited during transgressive peaks (Agrio Formation), with TOC content up to 5.1%. Lowstand sandstones bodies, 10 to 100 m thick, are composed of eolian and fluvial facies with good reservoir conditions (Avil and Troncoso Sandstones). The seals are provided by the organic-rich shales resting sharply upon the Avil Sandstone and a widespread Aptian-Albian evaporitic event (Huitrin Formation) on top of the Troncoso reservoir. Tertiary structural traps (duplex anticlines) are developed in the outer foothills, whereas structural, combined and stratigraphic traps are present in the adjacent stable structural platform. Oil-to-source rock and oil-to-oil correlation by chromatographic and biomarker fingerprints, carbon isotopic composition and the geological evidences support the proposed oil system.« less

The Early Identity Exploration Scale-a measure of initial exploration in breadth during early adolescence.

PubMed

Kłym, Maria; Cieciuch, Jan

2015-01-01

The existing models and measurement instruments concerning identity appear to primarily focus on adolescence and early adulthood, and studies extending identity research to younger stages of life are scarce. There has been a particular lack of instruments measuring the early stages of identity formation, especially the process of exploration, which has been portrayed as a central process during this particular period of life. Our aim is to help fill the gap in the literature and facilitate further studies of the exploration process by providing an appropriate instrument to measure exploration in breadth during early adolescence. As a coherent and mature sense of identity is closely associated with psychosocial well-being, an effective identity exploration scale will enable researchers to assess the predictors of young adolescents' well-being. We propose a model of identity exploration domains based on the literature and considering 12 exploration domains: physical appearance, free time, family, work, boyfriend-girlfriend relationships, own opinion formation, perception of own place in the life cycle, self-reflection, future, future family, outlook on life, and attitude toward rules. The study was conducted on a group of N = 454 adolescents (50% males, M age = 13.04, SD = 0.98). Both reliability and structural validity, as verified by confirmatory factor analysis were satisfactory. The instrument is invariant across gender groups at the scalar level of measurement invariance.

The Early Identity Exploration Scale—a measure of initial exploration in breadth during early adolescence

PubMed Central

Kłym, Maria; Cieciuch, Jan

2015-01-01

The existing models and measurement instruments concerning identity appear to primarily focus on adolescence and early adulthood, and studies extending identity research to younger stages of life are scarce. There has been a particular lack of instruments measuring the early stages of identity formation, especially the process of exploration, which has been portrayed as a central process during this particular period of life. Our aim is to help fill the gap in the literature and facilitate further studies of the exploration process by providing an appropriate instrument to measure exploration in breadth during early adolescence. As a coherent and mature sense of identity is closely associated with psychosocial well-being, an effective identity exploration scale will enable researchers to assess the predictors of young adolescents' well-being. We propose a model of identity exploration domains based on the literature and considering 12 exploration domains: physical appearance, free time, family, work, boyfriend-girlfriend relationships, own opinion formation, perception of own place in the life cycle, self-reflection, future, future family, outlook on life, and attitude toward rules. The study was conducted on a group of N = 454 adolescents (50% males, Mage = 13.04, SD = 0.98). Both reliability and structural validity, as verified by confirmatory factor analysis were satisfactory. The instrument is invariant across gender groups at the scalar level of measurement invariance. PMID:25983707

Embedded Filaments in IRAS 05463+2652: Early Stage of Fragmentation and Star Formation Activities

NASA Astrophysics Data System (ADS)

Dewangan, L. K.; Devaraj, R.; Baug, T.; Ojha, D. K.

2017-10-01

We present a multiwavelength data analysis of IRAS 05463+2652 (hereafter I05463+2652) to study star formation mechanisms. A shell-like structure around I05463+2652 is evident in the Herschel column density map, which is not associated with any ionized emission. Based on the Herschel submillimeter images, several parsec-scale filaments (including two elongated filaments, “s-fl” and “nw-fl” having lengths of ˜6.4 and ˜8.8 pc, respectively) are investigated in the I05463+2652 site. The Herschel temperature map depicts all these features in a temperature range of ˜11-13 K. 39 clumps are identified and have masses between ˜ 70{--}945 {M}⊙ . The majority of clumps (having {M}{clump}≳ 300 {M}⊙ ) are distributed toward the shell-like structure. 175 young stellar objects (YSOs) are selected using the photometric 1-5 μm data and a majority of these YSOs are distributed toward the four areas of high column density (≳ 5× {10}21 cm-2 A V ˜ 5.3 mag) in the shell-like structure, where massive clumps and a spatial association with filament(s) are also observed. The knowledge of observed masses per unit length of elongated filaments and critical mass length reveals that they are supercritical. The filament “nw-fl” is fragmented into five clumps (having {M}{clump}˜ 100{--}545 {M}⊙ ) and contains noticeable YSOs, while the other filament “s-fl” is fragmented into two clumps (having {M}{clump}˜ 170{--}215 {M}⊙ ) without YSOs. Together, these observational results favor the role of filaments in the star formation process in I05480+2545. This study also reveals the filament “s-fl,” containing two starless clumps, at an early stage of fragmentation.

Preservation of Archaeal Surface Layer Structure During Mineralization

NASA Astrophysics Data System (ADS)

Kish, Adrienne; Miot, Jennyfer; Lombard, Carine; Guigner, Jean-Michel; Bernard, Sylvain; Zirah, Séverine; Guyot, François

2016-05-01

Proteinaceous surface layers (S-layers) are highly ordered, crystalline structures commonly found in prokaryotic cell envelopes that augment their structural stability and modify interactions with metals in the environment. While mineral formation associated with S-layers has previously been noted, the mechanisms were unconstrained. Using Sulfolobus acidocaldarius a hyperthermophilic archaeon native to metal-enriched environments and possessing a cell envelope composed only of a S-layer and a lipid cell membrane, we describe a passive process of iron phosphate nucleation and growth within the S-layer of cells and cell-free S-layer “ghosts” during incubation in a Fe-rich medium, independently of metabolic activity. This process followed five steps: (1) initial formation of mineral patches associated with S-layer; (2) patch expansion; (3) patch connection; (4) formation of a continuous mineral encrusted layer at the cell surface; (5) early stages of S-layer fossilization via growth of the extracellular mineralized layer and the mineralization of cytosolic face of the cell membrane. At more advanced stages of encrustation, encrusted outer membrane vesicles are formed, likely in an attempt to remove damaged S-layer proteins. The S-layer structure remains strikingly well preserved even upon the final step of encrustation, offering potential biosignatures to be looked for in the fossil record.

Regulation of early Xenopus development by ErbB signaling

PubMed Central

Nie, Shuyi; Chang, Chenbei

2008-01-01

ErbB signaling has long been implicated in cancer formation and progression and is shown to regulate cell division, migration and death during tumorigenesis. The functions of the ErbB pathway during early vertebrate embryogenesis, however, are not well understood. Here we report characterization of ErbB activities during early frog development. Gain-of-function analyses show that EGFR, ErbB2 and ErbB4 induce ectopic tumor-like cell mass that contains increased numbers of mitotic cells. Both the muscle and the neural markers are expressed in these ectopic protrusions. ErbBs also induce mesodermal markers in ectodermal explants. Loss-of-function studies using carboxyl terminal-truncated dominant-negative ErbB receptors demonstrate that blocking ErbB signals leads to defective gastrulation movements and malformation of the embryonic axis with a reduction in the head structures in early frog embryos. These data, together with the observation that ErbBs are expressed early during frog embryogenesis, suggest that ErbBs regulate cell proliferation, movements and embryonic patterning during early Xenopus development. PMID:16258939

Local Auxin Biosynthesis Mediated by a YUCCA Flavin Monooxygenase Regulates Haustorium Development in the Parasitic Plant Phtheirospermum japonicum.

PubMed

Ishida, Juliane K; Wakatake, Takanori; Yoshida, Satoko; Takebayashi, Yumiko; Kasahara, Hiroyuki; Wafula, Eric; dePamphilis, Claude W; Namba, Shigetou; Shirasu, Ken

2016-08-01

Parasitic plants in the Orobanchaceae cause serious agricultural problems worldwide. Parasitic plants develop a multicellular infectious organ called a haustorium after recognition of host-released signals. To understand the molecular events associated with host signal perception and haustorium development, we identified differentially regulated genes expressed during early haustorium development in the facultative parasite Phtheirospermum japonicum using a de novo assembled transcriptome and a customized microarray. Among the genes that were upregulated during early haustorium development, we identified YUC3, which encodes a functional YUCCA (YUC) flavin monooxygenase involved in auxin biosynthesis. YUC3 was specifically expressed in the epidermal cells around the host contact site at an early time point in haustorium formation. The spatio-temporal expression patterns of YUC3 coincided with those of the auxin response marker DR5, suggesting generation of auxin response maxima at the haustorium apex. Roots transformed with YUC3 knockdown constructs formed haustoria less frequently than nontransgenic roots. Moreover, ectopic expression of YUC3 at the root epidermal cells induced the formation of haustorium-like structures in transgenic P. japonicum roots. Our results suggest that expression of the auxin biosynthesis gene YUC3 at the epidermal cells near the contact site plays a pivotal role in haustorium formation in the root parasitic plant P. japonicum. © 2016 American Society of Plant Biologists. All rights reserved.

Plasma rich in growth factors had limited effect on early bone formation in extraction sockets: Response to "Anitua, E., Alkhraisat, M.H. & Orive, G. (2013) Letter to the Editor: Rigorous methodology is the school of coherent conclusions in science. European Journal of Oral Implantology 6: 9-11.".

PubMed

Farina, Roberto; Bressan, Eriberto; Taut, Andrei; Cucchi, Alessandro; Trombelli, Leonardo

2014-10-01

To address the criticisms raised by Anitua et al. (European Journal of Oral Implantology, 6, 2013, 9-11) to the article "Plasma Rich in Growth Factors (PRGF) in Human Post-Extraction Sockets: an Histological and Histomorphometric Study.", recently published by Farina and colleagues (Clinical Oral Implants Research 2012; doi: 10.1111/clr.12033). All the methodological aspects criticized in the letter by Anitua et al. were thoroughly reconsidered and discussed in a structured short communication. When indicated, pertinent, additional material was included to reinforce our considerations. As most clinical studies in implant dentistry, including previous studies evaluating the efficacy/effectiveness of PRGF, the study by Farina et al. has some limitations. However, it is currently the only published controlled trial using quantitative parameters related to PRGF-induced early bone formation. Despite all limitations, the results of the study by Farina et al., which were based on different quantitative parameters (micro-CT scan, immunohistochemical markers of wound healing and bone deposition), indicated a limited effect of PRGF on early bone formation in extraction sockets. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Galaxy Formation through Filamentary Accretion at z = 6.1

NASA Astrophysics Data System (ADS)

Jones, G. C.; Willott, C. J.; Carilli, C. L.; Ferrara, A.; Wang, R.; Wagg, J.

2017-08-01

We present Atacama Large Millimeter/submillimeter Array observations of the dust continuum and [C II] 158 μm line emission from the z = 6.0695 Lyman-Break Galaxy (LBG) WMH5. These observations at 0.″3 spatial resolution show a compact (˜3 kpc) main galaxy in dust and [C II] emission, with a “tail” of emission extending to the east by about 5 kpc (in projection). The [C II] tail is comprised predominantly of two distinct sub-components in velocity, separated from the core by ˜100 and 250 km s-1, with narrow intrinsic widths of about 80 km s-1, which we call “sub-galaxies.” The sub-galaxies themselves are extended east-west by about 3 kpc in individual channel images. The [C II] tail joins smoothly into the main galaxy velocity field. The [C II] line to continuum ratios are comparable for the main and sub-galaxy positions, within a factor two. In addition, these ratios are comparable to z˜ 5.5 LBGs. We conjecture that the WMH5 system represents the early formation of a galaxy through the accretion of smaller satellite galaxies, embedded in a smoother gas distribution, along a possibly filamentary structure. The results are consistent with current cosmological simulations of early galaxy formation and support the idea of very early enrichment with dust and heavy elements of the accreting material.

Simulations of the formation of large-scale structure

NASA Astrophysics Data System (ADS)

White, S. D. M.

Numerical studies related to the simulation of structure growth are examined. The linear development of fluctuations in the early universe is studied. The research of Aarseth, Gott, and Turner (1979) based on N-body integrators that obtained particle accelerations by direct summation of the forces due to other objects is discussed. Consideration is given to the 'pancake theory' of Zel'dovich (1970) for the evolution from adiabatic initial fluctuation, the neutrino-dominated universe models of White, Frenk, and Davis (1983), and the simulations of Davis et al. (1985).

Nanostructures nucleation in carbon-metal gaseous phase: A molecular dynamics study

NASA Astrophysics Data System (ADS)

Galiullina, G. M.; Orekhov, N. D.; Stegailov, V. V.

2018-01-01

We perform nonequilibrium molecular dynamics simulation of carbon nanoclusters nucleation and early stages of growth from the gaseous phase. We analyze the catalytic effect of iron atoms on the nucleation kinetics and structure of the resultant nanoparticles. Reactive Force Field (ReaxFF) is used in the simulations for the description of bond formation and dissociation during the nucleation process at the nanoscale. The catalytic effect of iron reveals itself even on nanosecond simulation times: iron atoms accelerate the process of clustering but result in less graphitized carbon structures.

A new osteichthyan from the late Silurian of Yunnan, China.

PubMed

Choo, Brian; Zhu, Min; Qu, Qingming; Yu, Xiaobo; Jia, Liantao; Zhao, Wenjin

2017-01-01

Our understanding of early gnathostome evolution has been hampered by a generally scant fossil record beyond the Devonian. Recent discoveries from the late Silurian Xiaoxiang Fauna of Yunnan, China, have yielded significant new information, including the earliest articulated osteichthyan fossils from the Ludlow-aged Kuanti Formation. Here we describe the partial postcranium of a new primitive bony fish from the Kuanti Formation that represents the second known taxon of pre-Devonian osteichthyan revealing articulated remains. The new form, Sparalepis tingi gen. et sp. nov., displays similarities with Guiyu and Psarolepis, including a spine-bearing pectoral girdle and a placoderm-like dermal pelvic girdle, a structure only recently identified in early osteichthyans. The squamation with particularly thick rhombic scales shares an overall morphological similarity to that of Psarolepis. However, the anterior flank scales of Sparalepis possess an unusual interlocking system of ventral bulges embraced by dorsal concavities on the outer surfaces. A phylogenetic analysis resolves Sparalepis within a previously recovered cluster of stem-sarcopterygians including Guiyu, Psarolepis and Achoania. The high diversity of osteichthyans from the Ludlow of Yunnan strongly contrasts with other Silurian vertebrate assemblages, suggesting that the South China block may have been an early center of diversification for early gnathostomes, well before the advent of the Devonian "Age of Fishes".

Seeking new potential in the early-late Permian Gharif Play, West Central Oman

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guit, F.; Al-Lawati, M.; Nederlof, P.

1995-08-01

West Central Oman is a relatively underexplored area where the hydrocarbons found to date occur mainly within the Early-Late Permian Gharif Formation. Structural definition of the low relief closures is hampered by seismic velocity variations caused by dune terrain. Recent exploration activity resulted in several Gharif discoveries, but highlighted reservoir distribution problems. The Gharif Formation, which consists of fluvio-marine sediments, conformably overlies the glacio-lacustine sediments of the Early Permian Al Khlata Formation. It is overlain by shallow marine carbonates of the Late Permian Khuff Formation, the main regional seal. The area is located distally from the main sediment sources tomore » the east. Reservoir development and lateral continuity are seen as the main risk. Most reservoirs are beyond seismic resolution, only the stacked sandstones of the incised valley fills could provide sufficient acoustic contrast to be recognized on seismic. Geochemical typing indicates that the hydrocarbons in the Gharif can be grouped in two main families: the Huqf and Q-hydrocarbons, which are believed to originate from Cambrian to Precambrian source rocks. Although the two hydrocarbon families are sometimes found in one well, they have very different spatial distributions. The Q-oils form continuous strings of accumulations below the main regional seal, whereas the Huqf hydrocarbons occur scattered throughout the area. Mixed accumulations are found where cross-faults or salt domes intercept a Q-oil fairway. Future exploration activities will be guided by refined sedimentological, stratigraphical and hydrocarbon migration models and by the continued efforts to recognize incised valley fills on seismic.« less

The effect of thermal velocities on structure formation in N-body simulations of warm dark matter

NASA Astrophysics Data System (ADS)

Leo, Matteo; Baugh, Carlton M.; Li, Baojiu; Pascoli, Silvia

2017-11-01

We investigate the impact of thermal velocities in N-body simulations of structure formation in warm dark matter models. Adopting the commonly used approach of adding thermal velocities, randomly selected from a Fermi-Dirac distribution, to the gravitationally-induced velocities of the simulation particles, we compare the matter and velocity power spectra measured from CDM and WDM simulations, in the latter case with and without thermal velocities. This prescription for adding thermal velocities introduces numerical noise into the initial conditions, which influences structure formation. At early times, the noise affects dramatically the power spectra measured from simulations with thermal velocities, with deviations of the order of ~ Script O(10) (in the matter power spectra) and of the order of ~ Script O(102) (in the velocity power spectra) compared to those extracted from simulations without thermal velocities. At late times, these effects are less pronounced with deviations of less than a few percent. Increasing the resolution of the N-body simulation shifts these discrepancies to higher wavenumbers. We also find that spurious haloes start to appear in simulations which include thermal velocities at a mass that is ~3 times larger than in simulations without thermal velocities.

ngVLA Key Science Goal 3: Charting the Assembly, Structure, and Evolution of Galaxies Over Cosmic Time

NASA Astrophysics Data System (ADS)

Riechers, Dominik A.; Bolatto, Alberto D.; Carilli, Chris; Casey, Caitlin M.; Decarli, Roberto; Murphy, Eric Joseph; Narayanan, Desika; Walter, Fabian; ngVLA Galaxy Assembly through Cosmic Time Science Working Group, ngVLA Galaxy Ecosystems Science Working Group

2018-01-01

The Next Generation Very Large Array (ngVLA) will fundamentally advance our understanding of the formation processes that lead to the assembly of galaxies throughout cosmic history. The combination of large bandwidth with unprecedented sensitivity to the critical low-level CO lines over virtually the entire redshift range will open up the opportunity to conduct large-scale, deep cold molecular gas surveys, mapping the fuel for star formation in galaxies over substantial cosmic volumes. Imaging of the sub-kiloparsec scale distribution and kinematic structure of molecular gas in both normal main-sequence galaxies and large starbursts back to early cosmic epochs will reveal the physical processes responsible for star formation and black hole growth in galaxies over a broad range in redshifts. In the nearby universe, the ngVLA has the capability to survey the structure of the cold, star-forming interstellar medium at parsec-resolution out to the Virgo cluster. A range of molecular tracers will be accessible to map the motion, distribution, and physical and chemical state of the gas as it flows in from the outer disk, assembles into clouds, and experiences feedback due to star formation or accretion into central super-massive black holes. These investigations will crucially complement studies of the star formation and stellar mass histories with the Large UV/Optical/Infrared Surveyor and the Origins Space Telescope, providing the means to obtain a comprehensive picture of galaxy evolution through cosmic times.

Ironstone deposits hosted in Eocene carbonates from Bahariya (Egypt)-New perspective on cherty ironstone occurrences

NASA Astrophysics Data System (ADS)

Afify, A. M.; Sanz-Montero, M. E.; Calvo, J. P.

2015-11-01

This paper gives new insight into the genesis of cherty ironstone deposits. The research was centered on well-exposed, unique cherty ironstone mineralization associated with Eocene carbonates from the northern part of the Bahariya Depression (Egypt). The economically important ironstones occur in the Naqb Formation (Early Eocene), which is mainly formed of shallow marine carbonate deposits. Periods of lowstand sea-level caused extensive early dissolution (karstification) of the depositional carbonates and dolomitization associated with mixing zones of fresh and marine pore-water. In faulted areas, the Eocene carbonate deposits were transformed into cherty ironstone with preservation of the precursor carbonate sedimentary features, i.e. skeletal and non-skeletal grain types, thickness, bedding, lateral and vertical sequential arrangement, and karst profiles. The ore deposits are composed of iron oxyhydroxides, mainly hematite and goethite, chert in the form of micro- to macro-quartz and chalcedony, various manganese minerals, barite, and a number of subordinate sulfate and clay minerals. Detailed petrographic analysis shows that quartz and iron oxides were coetaneous and selectively replaced carbonates, the coarse dolomite crystals having been preferentially transformed into quartz whereas the micro-crystalline carbonates were replaced by the iron oxyhydroxides. A number of petrographic, sedimentological and structural features including the presence of hydrothermal-mediated minerals (e.g., jacobsite), the geochemistry of the ore minerals as well as the structure-controlled location of the mineralization suggest a hydrothermal source for the ore-bearing fluids circulating through major faults and reflect their proximity to centers of magmatism. The proposed formation model can contribute to better understanding of the genetic mechanisms of formation of banded iron formations (BIFs) that were abundant during the Precambrian.

Self-Assembly of Phosphate Amphiphiles in Mixtures of Prebiotically Plausible Surfactants

PubMed Central

Albertsen, A.N.; Duffy, C.D.; Sutherland, J.D.

2014-01-01

Abstract The spontaneous formation of closed bilayer structures from prebiotically plausible amphiphiles is an essential requirement for the emergence of early cells on prebiotic Earth. The sources of amphiphiles could have been both endo- and exogenous (accretion of meteorite carbonaceous material or interstellar dust particles). Among all prebiotic possible amphiphile candidates, those containing phosphate are the least investigated species because their self-assembly occurs in a seemingly too narrow range of conditions. The self-assembly of simple phosphate amphiphiles should, however, be of great interest, as contemporary membranes predominantly contain phospholipids. In contrast to common expectations, we show that these amphiphiles can be easily synthesized under prebiotically plausible environmental conditions and can efficiently form bilayer structures in the presence of various co-surfactants across a large range of pH values. Vesiculation was even observed in crude reaction mixtures that contained 1-decanol as the amphiphile precursor. The two best co-surfactants promoted vesicle formation over the entire pH range in aqueous solutions. Expanding the pH range where bilayer membranes self-assemble and remain intact is a prerequisite for the emergence of early cell-like compartments and their preservation under fluctuating environmental conditions. These mixed bilayers also retained small charged solutes, such as dyes. These results demonstrate that alkyl phosphate amphiphiles might have played a significant role as early compartment building blocks. Key Words: Vesicles—Alkyl phosphate—Prebiotic synthesis—Amphiphile mixtures. Astrobiology 14, 462–472. PMID:24885934

Dust-Corrected Star Formation Rates in Galaxies with Outer Rings

NASA Astrophysics Data System (ADS)

Kostiuk, I.; Silchenko, O.

2018-03-01

The star formation rates SFR, as well as the SFR surface densities ΣSFR and absolute stellar magnitudes MAB, are determined and corrected for interinsic dust absorption for 34 disk galaxies of early morphological types with an outer ring structure and ultraviolet emission from the ring. These characteristic are determined for the outer ring structures and for the galaxies as a whole. Data from the space telescopes GALEX (in the NUV and FUV ultraviolet ranges) and WISE (in the W4 22 μm infrared band) are used. The average relative deviation in the corrected SFR and ΣSFR derived from the NUV and FUV bands is only 19.0%, so their averaged values are used for statistical consideration. The relations between the dust-corrected SFR characteristics, UV colours, the galaxy morphological type, absolute magnitude are illustrated.

Intercellular signaling in Stigmatella aurantiaca: Purification and characterization of stigmolone, a myxobacterial pheromone

PubMed Central

Plaga, Wulf; Stamm, Irmela; Schairer, Hans Ulrich

1998-01-01

The myxobacterium Stigmatella aurantiaca passes through a life cycle that involves formation of a multicellular fruiting body as the most complex stage. An early step in this differentiation process depends on a signal factor secreted by the cells when nutrients become limited. The formation of a fruiting body from a small cell population can be accelerated by addition of this secreted material. The bioactive compound was found to be steam volatile. It was purified to homogeneity by steam distillation followed by reversed-phase and normal-phase HPLC. The pheromone was named stigmolone, in accordance with the structure 2,5,8-trimethyl-8-hydroxy-nonan-4-one, as determined by NMR and mass spectrometry. Stigmolone represents a structurally unique and highly bioactive prokaryotic pheromone that is effective in the bioassay at 1 nM concentration. PMID:9736724

Intercellular signaling in Stigmatella aurantiaca: purification and characterization of stigmolone, a myxobacterial pheromone.

PubMed

Plaga, W; Stamm, I; Schairer, H U

1998-09-15

The myxobacterium Stigmatella aurantiaca passes through a life cycle that involves formation of a multicellular fruiting body as the most complex stage. An early step in this differentiation process depends on a signal factor secreted by the cells when nutrients become limited. The formation of a fruiting body from a small cell population can be accelerated by addition of this secreted material. The bioactive compound was found to be steam volatile. It was purified to homogeneity by steam distillation followed by reversed-phase and normal-phase HPLC. The pheromone was named stigmolone, in accordance with the structure 2,5, 8-trimethyl-8-hydroxy-nonan-4-one, as determined by NMR and mass spectrometry. Stigmolone represents a structurally unique and highly bioactive prokaryotic pheromone that is effective in the bioassay at 1 nM concentration.

Titan's Xanadu region: Geomorphology and formation scenario

NASA Astrophysics Data System (ADS)

Langhans, Migrjam; Lunine, Jonathan I.; Mitri, Giuseppe

2013-04-01

Based on comprehensive mapping of the region, the recent theories of Xanadu's origin are examined and a chronology of geologic processes is proposed. The geologic history of Titan's Xanadu region is different from that of the other surface units on Saturn's moon. A previously proposed origin of western Xanadu from a giant impact in the early history of the moon is difficult to confirm given the scarcity of morphologic indications of an impact basin. The basic topographic structure of the landscape is controlled by tectonic processes that date back to the early history of Titan. More recently, the surface is intensely reworked and resurfaced by fluvial processes, which seem to have leveled out and compensated height differences. Although the surface age seems young at first view, the underlying processes that created this surface and the topographic structure appear to be ancient.

Direct Observation of the Growth of Au-Pd Core-Shell Nanoparticles Using in situ Low-Dose Liquid Cell STEM imaging

DOE PAGES

Bhattarai, Nabraj; Prozorov, Tanya

2016-07-25

Bimetallic core-shell nanoparticles are widely used as catalysts in several industrial reactions, with core-shell structures permitting facile surface modification and allowing increased stability and durability, and cost-effectiveness of the catalysts. We report, for the first time, on observing the early stages of the formation of Au-Pd core-shell bimetallic nanoparticles via the seed-mediated growth in the presence of reducing agent, while employing the low-dose scanning transmission electron microscopy imaging with the fluid cell in situ. Use of the continuous flow in situ fluid cell platform allows for delivery of reagent solutions and generation of near-native reaction environment in the reaction chamber,more » and permits direct visualization of the early stages of formation of Au-Pd core-shell structures at low dose rate (0.1 e -/(Å 2s)) in the presence of ascorbic acid. No core-shell structures were detected in the absence of reducing agent at the electron dose of 32.6 e -/Å 2. While the core-shell structures formed in situ under the low-dose imaging closely resemble those obtained in solution synthesis, the reaction kinetics in the fluid cell is affected by the radiolysis of liquid reagents induced by electron beam, altering the rate-determining reaction steps. The enhanced reduction of Pd ions leads to initial rapid growth of the nascent Pd shell along the <111> direction at the Au interface, followed by a slower rearrangement of the outer Pd layer. The latter becomes the rate-determining step in the in situ reaction and appears to follow the oriented attachment-like movement to yield a remodeled, compact and stable Au-Pd core-shell nanostructure. Our findings highlight the differences between the two reaction pathways and aid in understanding the mechanism of formation of the core-shell nanostructure in situ.« less

Investigating early-type galaxy evolution with a multiwavelength approach. II. The UV structure of 11 galaxies with Swift-UVOT

NASA Astrophysics Data System (ADS)

Rampazzo, R.; Mazzei, P.; Marino, A.; Uslenghi, M.; Trinchieri, G.; Wolter, A.

2017-06-01

Context. GALEX detected a significant fraction of early-type galaxies, in particular S0s, showing far-UV bright structures, sometimes involving an entire galaxy out to its outskirts. These features suggest the presence of either recent ongoing and/or prolonged star formation episodes, shedding new light on the evolution of these systems. Aims: We aim at understanding the evolutionary path[s] of these early-type galaxies and the mechanisms at the origin of their UV-bright structures. We investigate with a multiwavelength approach the link between the inner and outer galaxy regions of a set of 11 early-type galaxies that were selected because of their nearly passive stage of evolution in the nuclear region. Methods: This paper, second of a series, focuses on the information coming from the comparison between UV features detected by Swift-UVOT, which trace recent star formation, and the galaxy optical structure, which maps older stellar populations. We performed a surface photometric study of these early-type galaxies, observed with the Swift-UVOT UV filters W2 2030 Å λ0, M2 2231 Å λ0, W1 2634 Å λ0 and the UBV bands. BVRI photometry from other sources in the literature was also used. Our integrated magnitude measurements were analyzed and compared with corresponding values in the literature. We characterize the overall galaxy structure that best fits the UV and optical luminosity profiles using a single Sérsic law. Results: The galaxies NGC 1366, NGC 1426, NGC 3818, NGC 3962, and NGC 7192 show featureless luminosity profiles. Excluding NGC 1366, which has a clear edge-on disk (n ≈ 1-2), and NGC 3818, the remaining three galaxies have Sérsic's indices n ≈ 3-4 in the optical and a lower index in the UV. Bright ring- or arm-like structures are revealed by UV images and luminosity profiles of NGC 1415, NGC 1533, NGC 1543, NGC 2685, NGC 2974, and IC 2006. The ring- or arm-like structures differ from galaxy to galaxy. Sérsic indices of UV profiles for these galaxies are in the range n = 1.5-3 both in S0s and in galaxies classified as bona fide ellipticals, such as NGC 2974 and IC 2006. We note that in our sample optical Sérsic indices are usually higher than in the UV indices. (M2-V) color profiles are bluer in ring- or arm-like structures than in the galaxy body. Conclusions: The lower values of Sérsic indices in the UV bands with respect to optical bands, suggesting the presence of a disk, point out that the role of the dissipation cannot be neglected in recent evolutionary phases of these early-type galaxies. Full Table A.1 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/602/A97

Effect of Silver or Copper Nanoparticles-Dispersed Silane Coatings on Biofilm Formation in Cooling Water Systems

PubMed Central

Ogawa, Akiko; Kanematsu, Hideyuki; Sano, Katsuhiko; Sakai, Yoshiyuki; Ishida, Kunimitsu; Beech, Iwona B.; Suzuki, Osamu; Tanaka, Toshihiro

2016-01-01

Biofouling often occurs in cooling water systems, resulting in the reduction of heat exchange efficiency and corrosion of the cooling pipes, which raises the running costs. Therefore, controlling biofouling is very important. To regulate biofouling, we focus on the formation of biofilm, which is the early step of biofouling. In this study, we investigated whether silver or copper nanoparticles-dispersed silane coatings inhibited biofilm formation in cooling systems. We developed a closed laboratory biofilm reactor as a model of a cooling pipe and used seawater as a model for cooling water. Silver or copper nanoparticles-dispersed silane coating (Ag coating and Cu coating) coupons were soaked in seawater, and the seawater was circulated in the laboratory biofilm reactor for several days to create biofilms. Three-dimensional images of the surface showed that sea-island-like structures were formed on silane coatings and low concentration Cu coating, whereas nothing was formed on high concentration Cu coatings and low concentration Ag coating. The sea-island-like structures were analyzed by Raman spectroscopy to estimate the components of the biofilm. We found that both the Cu coating and Ag coating were effective methods to inhibit biofilm formation in cooling pipes. PMID:28773758

A Survey of Extended H_{2} Emission Towards a Sample of Massive YSOs

NASA Astrophysics Data System (ADS)

Navarete, F.; Damineli, A.; Barbosa, C. L.; Blum, R. D.

2014-10-01

Very few massive stars in early formation stages were clearly identified in the Milky Way and moreover, the processes of formation of such objects lacks of observational evidences. Two theories predict the formation of massive star: i) by merging of low mass stars or ii) by an accretion disk. One of the most prominent evidences for the accretion scenario is the presence of bipolar outflows associated to the central sources. Those structures were found on both intermediate and low-mass YSOs, but there are no evidences for associations with MYSOs. Based on that, a survey was designed to investigate the earliest stages of massive star formation through the molecular hydrogen transition at 2.12μm. A sample of ˜ 300 MYSOs candidates was selected from the Red MSX Source program and the sources were observed with the IR cameras Spartan (SOAR, Chile) and WIRCam (CFHT, Hawaii). Extended H_{2} emission was found toward 55% of the sample and 30% of the positive detections (50 sources) have bipolar morphology, suggesting collimated outflows. These results support the accretion scenario, since the merging of low mass stars would not produce jet-like structures.

Changes in bacterioplankton community structure during early lake ontogeny resulting from the retreat of the Greenland Ice Sheet

PubMed Central

Peter, Hannes; Jeppesen, Erik; De Meester, Luc; Sommaruga, Ruben

2018-01-01

Retreating glaciers and ice sheets are among the clearest signs of global climate change. One consequence of glacier retreat is the formation of new meltwater-lakes in previously ice-covered terrain. These lakes provide unique opportunities to understand patterns in community organization during early lake ontogeny. Here, we analyzed the bacterial community structure and diversity in six lakes recently formed by the retreat of the Greenland Ice Sheet (GrIS). The lakes represented a turbidity gradient depending on their past and present connectivity to the GrIS meltwaters. Bulk (16S rRNA genes) and putatively active (16S rRNA) fractions of the bacterioplankton communities were structured by changes in environmental conditions associated to the turbidity gradient. Differences in community structure among lakes were attributed to both, rare and abundant community members. Further, positive co-occurrence relationships among phylogenetically closely related community members dominate in these lakes. Our results show that environmental conditions along the turbidity gradient structure bacterial community composition, which shifts during lake ontogeny. Rare taxa contribute to these shifts, suggesting that the rare biosphere has an important ecological role during early lakes ontogeny. Members of the rare biosphere may be adapted to the transient niches in these nutrient poor lakes. The directionality and phylogenetic structure of co-occurrence relationships indicate that competitive interactions among closely related taxa may be important in the most turbid lakes. PMID:29087379

Changes in bacterioplankton community structure during early lake ontogeny resulting from the retreat of the Greenland Ice Sheet.

PubMed

Peter, Hannes; Jeppesen, Erik; De Meester, Luc; Sommaruga, Ruben

2017-10-31

Retreating glaciers and ice sheets are among the clearest signs of global climate change. One consequence of glacier retreat is the formation of new meltwater-lakes in previously ice-covered terrain. These lakes provide unique opportunities to understand patterns in community organization during early lake ontogeny. Here, we analyzed the bacterial community structure and diversity in six lakes recently formed by the retreat of the Greenland Ice Sheet (GrIS). The lakes represented a turbidity gradient depending on their past and present connectivity to the GrIS meltwaters. Bulk (16S rRNA genes) and putatively active (16S rRNA) fractions of the bacterioplankton communities were structured by changes in environmental conditions associated to the turbidity gradient. Differences in community structure among lakes were attributed to both, rare and abundant community members. Further, positive co-occurrence relationships among phylogenetically closely related community members dominate in these lakes. Our results show that environmental conditions along the turbidity gradient structure bacterial community composition, which shifts during lake ontogeny. Rare taxa contribute to these shifts, suggesting that the rare biosphere has an important ecological role during early lakes ontogeny. Members of the rare biosphere may be adapted to the transient niches in these nutrient poor lakes. The directionality and phylogenetic structure of co-occurrence relationships indicate that competitive interactions among closely related taxa may be important in the most turbid lakes.The ISME Journal advance online publication, 31 October 2017; doi:10.1038/ismej.2017.191.

Structural characterization of toxic oligomers that are kinetically trapped during α-synuclein fibril formation

PubMed Central

Chen, Serene W.; Drakulic, Srdja; Deas, Emma; Ouberai, Myriam; Aprile, Francesco A.; Arranz, Rocío; Ness, Samuel; Roodveldt, Cintia; Guilliams, Tim; De-Genst, Erwin J.; Klenerman, David; Wood, Nicholas W.; Knowles, Tuomas P.J.; Alfonso, Carlos; Rivas, Germán; Abramov, Andrey Y.; Valpuesta, José María; Dobson, Christopher M.; Cremades, Nunilo

2015-01-01

We describe the isolation and detailed structural characterization of stable toxic oligomers of α-synuclein that have accumulated during the process of amyloid formation. Our approach has allowed us to identify distinct subgroups of oligomers and to probe their molecular architectures by using cryo-electron microscopy (cryoEM) image reconstruction techniques. Although the oligomers exist in a range of sizes, with different extents and nature of β-sheet content and exposed hydrophobicity, they all possess a hollow cylindrical architecture with similarities to certain types of amyloid fibril, suggesting that the accumulation of at least some forms of amyloid oligomers is likely to be a consequence of very slow rates of rearrangement of their β-sheet structures. Our findings reveal the inherent multiplicity of the process of protein misfolding and the key role the β-sheet geometry acquired in the early stages of the self-assembly process plays in dictating the kinetic stability and the pathological nature of individual oligomeric species. PMID:25855634

The fate of NGC602, an intense region of star-formation in the Wing of the SMC

NASA Astrophysics Data System (ADS)

Sabbi, Elena

2017-08-01

This is a small 2 orbit proposal designed to measure the internal dynamics of NGC602, a small region of intense star formation in the Wing of the SMC, with a low gas and dust density that has been often considered an unfavorable place for star formation. Small regions of massive star formation are important to study for our understanding of the process of star and cluster formation, the ionization of the interstellar medium, and the injection of energy and momentum into their host galaxy. By combining our new observations with archival ACS/WFC data acquired in July 2004, we will be able to measure the relative proper motions of the NGC602 sub-structures better than 2.3 km/s and investigate the nature of the apparently isolated massive stars found around NGC602. This study will provide unique observational data to characterize the early phase of cluster evolution and test cluster formation theories. It will also address significant open issues in star formation, cluster dynamics and the origin of isolated supernovae and GRBs.

Results of paleomagnetic study of Early Proterozoic rocks in the Baikal Range of the Siberian craton

NASA Astrophysics Data System (ADS)

Vodovozov, V. Yu.; Didenko, A. N.; Gladkochub, D. P.; Mazukabzov, A. M.; Donskaya, T. V.

2007-10-01

This paper presents paleomagnetic results obtained from the study of Early Proterozoic rocks in the Baikal Range of the Siberian craton, namely, the 1850 1880-Ma volcanicalstic rocks of the Akitkanskian series of the North Baikal volcanic-plutonic belt) and 1674-Ma basic dikes of the Chaya complex within the massif. The data of this work are used to reconstruct the development of the Siberian craton structure in the Early Precambrian. The projections of the inferred paleomagnetic directions onto a sphere form S (southern) and W (western) groups of vectors of characteristic magnetization components. The S group consists of three clusters representing primary magnetization components belonging to different time levels of the end of the Early Proterozoic. The W group is represented by directions associated with a metachronous magnetization probably acquired during the Riphean. Four paleomagnetic poles are obtained. Two of them that can be regarded as key poles correspond to time levels of 1875 and 1670 Ma (the Early Proterozoic). The two other poles can be used for a detailed reconstruction of the Proterozoic segment of the Siberian apparent polar wander path. The data presented in the paper indicate that the formation of the southern Siberian craton structure was accomplished at the end of the Early Proterozoic, which resulted in a synchronous motion of different blocks composing the southern flank of the craton (in particular, the Sharyzhalgai and Baikal Ranges).

A deep learning method for early screening of lung cancer

NASA Astrophysics Data System (ADS)

Zhang, Kunpeng; Jiang, Huiqin; Ma, Ling; Gao, Jianbo; Yang, Xiaopeng

2018-04-01

Lung cancer is the leading cause of cancer-related deaths among men. In this paper, we propose a pulmonary nodule detection method for early screening of lung cancer based on the improved AlexNet model. In order to maintain the same image quality as the existing B/S architecture PACS system, we convert the original CT image into JPEG format image by analyzing the DICOM file firstly. Secondly, in view of the large size and complex background of CT chest images, we design the convolution neural network on basis of AlexNet model and sparse convolution structure. At last we train our models on the software named DIGITS which is provided by NVIDIA. The main contribution of this paper is to apply the convolutional neural network for the early screening of lung cancer and improve the screening accuracy by combining the AlexNet model with the sparse convolution structure. We make a series of experiments on the chest CT images using the proposed method, of which the sensitivity and specificity indicates that the method presented in this paper can effectively improve the accuracy of early screening of lung cancer and it has certain clinical significance at the same time.

Finite element simulation of ultrasonic waves in corroded reinforced concrete for early-stage corrosion detection

NASA Astrophysics Data System (ADS)

Tang, Qixiang; Yu, Tzuyang

2017-04-01

In reinforced concrete (RC) structures, corrosion of steel rebar introduces internal stress at the interface between rebar and concrete, ultimately leading to debonding and separation between rebar and concrete. Effective early-stage detection of steel rebar corrosion can significantly reduce maintenance costs and enable early-stage repair. In this paper, ultrasonic detection of early-stage steel rebar corrosion inside concrete is numerically investigated using the finite element method (FEM). Commercial FEM software (ABAQUS) was used in all simulation cases. Steel rebar was simplified and modeled by a cylindrical structure. 1MHz ultrasonic elastic waves were generated at the interface between rebar and concrete. Two-dimensional plain strain element was adopted in all FE models. Formation of surface rust in rebar was modeled by changing material properties and expanding element size in order to simulate the rust interface between rebar and concrete and the presence of interfacial stress. Two types of surface rust (corroded regions) were considered. Time domain and frequency domain responses of displacement were studied. From our simulation result, two corrosion indicators, baseline (b) and center frequency (fc) were proposed for detecting and quantifying corrosion.

The Biogeochemistry of Sulfur in Hydrothermal Systems

NASA Technical Reports Server (NTRS)

Schulte, Mitchell; Rogers, K. L.; DeVincenzi, Donald L. (Technical Monitor)

2001-01-01

The incorporation of sulfur into many biomolecules likely dates back to the development of the earliest metabolic strategies. Sulfur is common in enzymes and co-enzymes and is an indispensable structural component in many peptides and proteins. Early metabolism may have been heavily influenced by the abundance of sulfide minerals in hydrothermal systems. The incorporation of sulfur into many biomolecules likely dates back to the development of the earliest metabolic strategies. Sulfur is common in enzymes and co-enzymes and is an indispensable structural component in many peptides and proteins. Early metabolism may have been heavily influenced by the abundance of sulfide minerals in hydrothermal systems. Understanding how sulfur became prevalent in biochemical processes and many biomolecules requires knowledge of the reaction properties of sulfur-bearing compounds. We have previously estimated thermodynamic data for thiols, the simplest organic sulfur compounds, at elevated temperatures and pressures. If life began in hydrothermal environments, it is especially important to understand reactions at elevated temperatures among sulfur-bearing compounds and other organic molecules essential for the origin and persistence of life. Here we examine reactions that may have formed amino acids with thiols as reaction intermediates in hypothetical early Earth hydrothermal environments. (There are two amino acids, cysteine and methionine, that contain sulfur.) Our calculations suggest that significant amounts of some amino acids were produced in early Earth hydrothermal fluids, given reasonable concentrations H2, NH3, H2S and CO. For example, preliminary results indicate that glycine activities as high as 1 mmol can be reached in these systems at 100 C. Alanine formation from propanethiol is also a favorable reaction. On the other hand, the calculated equilibrium log activities of cysteine and serine from propanethiol are -21 and -19, respectively, at 100 C. These results indicate that while amino acid formation with thiols as intermediates is favored in some cases, other mechanisms may have been necessary to produce significant amounts of other amino acids. Coupled with our previous results for thiols, these studies imply that sulfur may have been easily incorporated into the organic geochemistry of early Earth hydrothermal systems, leading to its widespread use in biomolecules. Formation of more complex biomolecules in hydrothermal systems may have required sulfur-bearing organic compounds as reaction intermediates.

Nucleic acids, proteins, and chirality

NASA Technical Reports Server (NTRS)

Usher, D. A.; Profy, A. T.; Walstrum, S. A.; Needels, M. C.; Bulack, S. C.; Lo, K. M.

1984-01-01

The present investigation is concerned with experimental results related, in one case, to the chirality of nucleotides, and, in another case, to the possibility of a link between the chirality of nucleic acids, and that of peptides. It has been found that aminoacylation of the 'internal' hydroxyl group of a dinucleoside monophosphate can occur stereoselectively. However, this reaction has not yet been made a part of a working peptide synthesis scheme. The formation and cleavage of oligonucleotides is considered. In the event of the formation of a helical complex between the oligonucleotide and the polymer, 1-prime,5-prime-bonds in the oligomer are found to become more resistant towards cleavage. The conditions required for peptide bond formation are examined, taking into account the known structures of RNA and possible mechanisms for prebiotic peptide bond formation. The possibility is considered that the 2-prime,5-prime-internucleotide linkage could have played an important part in the early days of biological peptide synthesis.

New tectonic concept of the Arctic region evolution

NASA Astrophysics Data System (ADS)

Petrov, O. V.; Morozov, A.; Grikurov, G.; Shokalsky, S.; Kashubin, S.; Sobolev, N. V.; Petrov, E.

2012-12-01

The international project "Atlas of Geological Maps of Circumpolar Arctic at 1:5 million scale" was launched in 2003. It was initiated by geological surveys of Circum-Arctic states with active support from the UNESCO Commission for the Geological Map of the World (CGMW). This work engages a number of scientists from national academies of sciences and universities. As of today, international working groups have accomplished the compilation of geological, magnetic and gravity maps at 1:5 million scale. Upon completion of those basic maps, it became possible to undertake the compilation of the Tectonic Map of the Arctic - TeMAr. The final draft of this map is being demonstrated at GeoExpo here in Brisbane. Analysis of the new tectonic map clearly shows the Neoproterozoic - Paleozoic - late Mesozoic Paleoasian oceanic structures. Among those structures are the Neoproterozoic Timan Orogen, the Baikalian fold basement in the Pre-Yenisey zone and the collisional systems of Uralides and Kimmerides whose age becomes successively younger northward from Late Carboniferous - Early Permian to Triassic - Jurassic. Seismic and isotope-geochemistry data recently obtained on Lomonosov Ridge and Mendeleev Rise suggest the possibility that Neoproterozoic-Mesozoic orogenic structures of the High Arctic may incorporate isolated blocks of Early Precambrian continental crust. The north-directed decrease of age refers not only to orogenies caused by gradual closing of the Asian paleo-ocean but also to post-orogenic rift-related processes superposed on continental crust and reflected in the first place in the formation of LIPs. This is well exemplified by transition from the Early Triassic Siberian trap province to Triassic West Siberian province and then to Late Jurassic - Cretaceous, locally Cenozoic basaltic province of the High Arctic. The center of the Canadian Basin so far remains enigmatic: it was probably formed by seafloor spreading that could follow intensive Jurassic-Early Cretaceous continental rifting and volcanic activity. Reactivation of rifting in the Central Arctic at the beginning of Cenozoic led to the onset of spreading 56 million years ago along the emerging Gakkel Ridge and to the subsequent formation of the Eurasian Basin. Approximately 33 million years ago, the newly formed Eurasian oceanic basin connected with the Norwegian-Greenland Basin of the North Atlantic. Combined interpretation of seismostratigraphic data and drilling results suggests that during the Paleogene shallow-water sedimentation in the Central Arctic occurred, which indicates the high-standing sea level. Only in the Early Miocene (about 20 million years ago) the sea bottom sank sharply reaching its present-day depth and causing transition to deep-water deposition. This essential tectonic event is recorded throughout the Central Arctic elevations by a regional unconformity in seismostratigraphic sections. The Cenozoic expansion of the North Atlantic into the Central Arctic occurred across the structural assemblages whose formation was controlled by the preceding evolution of the Asian paleo-ocean.

Early diagenesis of organic matter in a Sawgrass peat from the Everglades, Florida

USGS Publications Warehouse

Orem, W.H.; Hatcher, P.G.

1987-01-01

The transformation of plant biopolymers to humic substances in peats during early diagenesis is a critical but poorly understood step in the formation of coal. This paper presents results concerning the structural interrelationships among various fractions of the organic matter in peat and the dissolved organic matter in the pore water from a site in The Everglades, relying primarily on elemental analysis and 13C nuclear magnetic resonance for structural elucidation. Our goal was to obtaine some insight into the sequence of steps involved in the formation of humic substances. Results show that the major change occurring in the whole peat during diagenesis is loss of carbohydrates. The components of the peat which are more resistant to microbial degradation become concentrated in the humin fraction. This resistant fraction of the organic matter includes aliphatic and aromatic components. The aromatic components are thought to be derived from lignin while the aliphatic moieties may represent decomposed algal remains. The carbohydrates lost from the whole peat appear to be concentrated in the fulvic acids and the dissolved organic matter in the pore water. The humic acids consist predominantly of aromatic and aliphatic structures, and may represent partially degraded lignin-like structures and aliphatic compounds from algae. The data presented here suggest that humic and fulvic acids are the partially degraded fractions of the peat while the humin contains the resistant or preserved portion of the organic matter. The proposition that humic substances are formed by the condensation of amino acids and sugars is not supported by the results of this study. ?? 1987.

Catastrophic event recorded among Holocene eolianites (Sidi Salem Formation, SE Tunisia)

NASA Astrophysics Data System (ADS)

Frébourg, Gregory; Hasler, Claude-Alain; Davaud, Eric

2010-03-01

A high-energy deposit cuts through the early Holocene eolianites of the Sidi Salem Formation which forms a ridge along the southeastern coast of Tunisia. The sedimentary structures as well as the paleo-altitude and paleo-location of the outcrop state for a subaqueous deposition by an unusually large catastrophic event. Regarding its age and the related uncertainties, it could be either an exceptional storm, or a landslide or impact triggered tsunami. The mega-tsunami of the 8000 BP collapse of the Valle del Bove valley (Etna Volcano) could be this event, for its matching age and calculated run-up height.

The effect of sulfated polysaccharides on the crystallization of calcite superstructures

NASA Astrophysics Data System (ADS)

Fried, Ruth; Mastai, Yitzhak

2012-01-01

Calcite with unique morphology and uniform size has been successfully synthesized in the presence of classes of polysaccharides based on carrageenans. In the crystallization of calcite, the choice of different carrageenans, (iota, lambda and kappa), as additives concedes systematic study of the influence of different chemical structures and particularly molecular charge on the formation of CaCO 3 crystals. The uniform calcite superstructures are formed by assemblies and aggregation of calcite crystals. The mechanism for the formation of calcite superstructures was studied by a variety of techniques, SEM, TEM, XRD, time-resolved conductivity and light scattering measurements, focusing on the early stages of crystals' nucleation and aggregation.

Processing of intended and unintended strategic issues and integration into the strategic agenda.

PubMed

Ridder, Hans-Gerd; Schrader, Jan Simon

2017-11-01

Strategic change is needed in hospitals due to external and internal pressures. However, research on strategic change, as a combination of management and medical expertise in hospitals, remains scarce. We analyze how intended strategic issues are processed into deliberate strategies and how unintended strategic issues are processed into emergent strategies in the management of strategy formation in hospitals. This study empirically investigates the integration of medical and management expertise in strategy formation. The longitudinal character of the case study enabled us to track patterns of intended and unintended strategic issues over 2 years. We triangulated data from interviews, observations, and documents. In accordance with the quality standards of qualitative research procedures, we analyzed the data by pattern matching and provided analytical generalization regarding strategy formation in hospitals. Our findings suggest that strategic issues are particularly successful within the strategy formation process if interest groups are concerned with the strategic issue, prospective profits are estimated, and relevant decisions makers are involved early on. Structure and interaction processes require clear criteria and transparent procedures for effective strategy formation. There is systematic neglect of medical expertise in processes of generating strategies. Our study reveals that the decentralized structure of medical centers is an adequate template for both the operationalization of intended strategic issues and the development of unintended strategic issues. However, tasks, roles, responsibility, resources, and administrative support are necessary for effective management of strategy formation. Similarly, criteria, procedures, and decision-making are prerequisites for effective strategy formation.

Increased Zinc Availability Enhances Initial Aggregation and Biofilm Formation of Streptococcus pneumoniae.

PubMed

Brown, Lindsey R; Caulkins, Rachel C; Schartel, Tyler E; Rosch, Jason W; Honsa, Erin S; Schultz-Cherry, Stacey; Meliopoulos, Victoria A; Cherry, Sean; Thornton, Justin A

2017-01-01

Bacteria growing within biofilms are protected from antibiotics and the immune system. Within these structures, horizontal transfer of genes encoding virulence factors, and promoting antibiotic resistance occurs, making biofilms an extremely important aspect of pneumococcal colonization and persistence. Identifying environmental cues that contribute to the formation of biofilms is critical to understanding pneumococcal colonization and infection. Iron has been shown to be essential for the formation of pneumococcal biofilms; however, the role of other physiologically important metals such as copper, zinc, and manganese has been largely neglected. In this study, we investigated the effect of metals on pneumococcal aggregation and early biofilm formation. Our results show that biofilms increase as zinc concentrations increase. The effect was found to be zinc-specific, as altering copper and manganese concentrations did not affect biofilm formation. Scanning electron microscopy analysis revealed structural differences between biofilms grown in varying concentrations of zinc. Analysis of biofilm formation in a mutant strain lacking the peroxide-generating enzyme pyruvate oxidase, SpxB, revealed that zinc does not protect against pneumococcal H 2 O 2 . Further, analysis of a mutant strain lacking the major autolysin, LytA, indicated the role of zinc as a negative regulator of LytA-dependent autolysis, which could affect biofilm formation. Additionally, analysis of cell-cell aggregation via plating and microscopy revealed that high concentrations of zinc contribute to intercellular interaction of pneumococci. The findings from this study demonstrate that metal availability contributes to the ability of pneumococci to form aggregates and subsequently, biofilms.

Serum, liver, and lung levels of the major extracellular matrix components at the early stage of BCG-induced granulomatosis depending on the infection route.

PubMed

Kim, L B; Shkurupy, V A; Putyatina, A N

2015-01-01

Experiments on the model of mouse BCG-induced granulomatous showed that the content of glycosaminoglycans and proteoglycans in the extracellular matrix of the liver and lungs are changed at the early stages of inflammation (days 3 and 30 postinfection) before cell destruction in the organs begins. This is related to degradation of extracellular matrix structures. Their high content in the blood and interstitium probably contributes to the formation of granulomas, fibroblast proliferation and organ fibrosis. These processes depend on the infection route that determines different conditions for generalization of the inflammation process. Intravenous method of vaccine injection is preferable to use when designing the experiments simulating tuberculosis granulomatosis, especially for the analysis of its early stages.

The early cretaceous evolution of carbonate platforms from northern Oman

DOE Office of Scientific and Technical Information (OSTI.GOV)

Masse, J.P.; Borgomano, J.; Maskiry, S.Al.

1993-09-01

In northern Oman (Jebel Akhdar and foothills) Hauterivian to early Aptian shallow carbonate platforms are widely extending and pass laterally to slope and basin environments in the Nakhl zone. Progradational geometries are identified in that zone where significant correlation between thickness and sediment types supports a prominent tectonic control. The platform records four main sedimentary breaks (drowning events). Early Barremian (lower Lekhwair Formation), Late Barremian (basal Kharaib Formation), lowermost early Aptian (upper Kharaib Formation) and middle Aptian (Shuaiba-Al Hassanat formations boundary). The late Aptian-early Albian hiatus (pre-Nahr Umr unconformity) is regarded as an early Albian tectonically driven erosion. In themore » Nakhl zone, coral-rudist limestones of late Aptian-early Albian (lower Al Hassanat Formation) document an east-west ribbon platform, the southward extension of which was obscured by the middle Albian erosions and rudist limestones of middle to late Albian (upper Al Hassanat Formation), a lateral equivalent of the Nahr Umr circa littoral shaly sediments, document an east-west-trending linear platform. The foregoing points out a northward progradation coeval with a southward transgressive major trend for the Hauterivian-early Aptian interval, a faulted margin corresponding with the Nakhl zone active during the Aptian-Albian, a late Aptian ribbon platform coeval with the Bab basin initiation southward, a regional uplifting and truncation during the early-Albian (Austrian phase), whereas shallow-water carbonates are still forming at the edge of the former platform, and an active linear platform at the northern edge of the Nahr Umr basin, the corresponding drowning contemporaneous with the onset of the Cenomanian platform eastward.« less

Controls on development and diversity of Early Archean stromatolites

PubMed Central

Allwood, Abigail C.; Grotzinger, John P.; Knoll, Andrew H.; Burch, Ian W.; Anderson, Mark S.; Coleman, Max L.; Kanik, Isik

2009-01-01

The ≈3,450-million-year-old Strelley Pool Formation in Western Australia contains a reef-like assembly of laminated sedimentary accretion structures (stromatolites) that have macroscale characteristics suggestive of biological influence. However, direct microscale evidence of biology—namely, organic microbial remains or biosedimentary fabrics—has to date eluded discovery in the extensively-recrystallized rocks. Recently-identified outcrops with relatively good textural preservation record microscale evidence of primary sedimentary processes, including some that indicate probable microbial mat formation. Furthermore, we find relict fabrics and organic layers that covary with stromatolite morphology, linking morphologic diversity to changes in sedimentation, seafloor mineral precipitation, and inferred microbial mat development. Thus, the most direct and compelling signatures of life in the Strelley Pool Formation are those observed at the microscopic scale. By examining spatiotemporal changes in microscale characteristics it is possible not only to recognize the presence of probable microbial mats during stromatolite development, but also to infer aspects of the biological inputs to stromatolite morphogenesis. The persistence of an inferred biological signal through changing environmental circumstances and stromatolite types indicates that benthic microbial populations adapted to shifting environmental conditions in early oceans. PMID:19515817

Probing Galaxy Formation and Evolution with Space Born Sub-Millimeter Telescopes

NASA Technical Reports Server (NTRS)

Dwek, Eli; Arendt, Richard G.; Moseley, Harvey; Benford, Dominic; Shafer, Richard; Mather, John; Oegerle, William (Technical Monitor)

2002-01-01

A major unresolved question in cosmology is how the complex system of galaxies we see in the present universe evolved from an almost perfectly smooth beginning. Multiwavelength observations of galaxies have revealed that a significant fraction of their UV-visible starlight is absorbed and reradiated by dust at infrared JR) and submillimeter wavelengths. The cumulative IR-submm. emission from galaxies since the epoch of recombination, the cosmic IR background, has recently been recorded by the COBE satellite. The COBE observations in combination with recent submm surveys conducted with the SCUBA on the 15 m JCMT have shown that most of the radiation from star formation that has taken place in the early stages of galaxy evolution is reradiated by dust at submm wavelengths. Therefore, submm telescopes offer a unique probe of the early stages of galaxy formation and evolution. This talk will: (1) consider the impact of telescope diameter on the depth of the survey (what redshift can be probed) at different wavelengths; (2) discuss the relative scientific merits of high-resolution narrow-field surveys versus lower resolution deep surveys; and (3) show how both strategies offer complementary information crucial to our understanding of the structure and evolution of galaxies in the universe.

Remodeling of the Infection Chamber before Infection Thread Formation Reveals a Two-Step Mechanism for Rhizobial Entry into the Host Legume Root Hair1

PubMed Central

Teillet, Alice; Chabaud, Mireille; Ivanov, Sergey; Genre, Andrea; Limpens, Erik; de Carvalho-Niebel, Fernanda; Barker, David G.

2015-01-01

In many legumes, root entry of symbiotic nitrogen-fixing rhizobia occurs via host-constructed tubular tip-growing structures known as infection threads (ITs). Here, we have used a confocal microscopy live-tissue imaging approach to investigate early stages of IT formation in Medicago truncatula root hairs (RHs) expressing fluorescent protein fusion reporters. This has revealed that ITs only initiate 10 to 20 h after the completion of RH curling, by which time major modifications have occurred within the so-called infection chamber, the site of bacterial entrapment. These include the accumulation of exocytosis (M. truncatula Vesicle-Associated Membrane Protein721e)- and cell wall (M. truncatula EARLY NODULIN11)-associated markers, concomitant with radial expansion of the chamber. Significantly, the infection-defective M. truncatula nodule inception-1 mutant is unable to create a functional infection chamber. This underlines the importance of the NIN-dependent phase of host cell wall remodeling that accompanies bacterial proliferation and precedes IT formation, and leads us to propose a two-step model for rhizobial infection initiation in legume RHs. PMID:25659382

Early-term and mid-term histologic events during single-level posterolateral intertransverse process fusion with rhBMP-2/collagen carrier and a ceramic bulking agent in a nonhuman primate model: implications for bone graft preparation.

PubMed

Khan, Safdar N; Toth, Jeffrey M; Gupta, Kavita; Glassman, Steven D; Gupta, Munish C

2014-06-01

We used a nonhuman primate lumbar intertransverse process arthrodesis model to evaluate biological cascade of bone formation using different carrier preparation methods with a single dose of recombinant human bone morphogenetic protein-2 (rhBMP-2) at early time points. To examine early-term/mid-term descriptive histologic and computerized tomographic events in single-level uninstrumented posterolateral nonhuman primate spinal fusions using rhBMP-2/absorbable collagen sponge (ACS) combined with ceramic bulking agents in 3 different configurations. rhBMP-2 on an ACS carrier alone leads to consistent posterolateral lumbar spine fusions in lower-order animals; however, these results have been difficult to replicate in nonhuman primates. Twelve skeletally mature, rhesus macaque monkeys underwent single-level posterolateral arthrodesis at L4-L5. A hydroxyapatite/β-tricalcium phosphate ceramic bulking agent in 3 formulations was used in the treatment groups (n=3). When used, rhBMP-2/ACS at 1.5 mg/cm (3.0 mg rhBMP-2) was combined with 2.5 cm of ceramic bulking agent per side. Animals were euthanized at 4 and 12 weeks postoperative. Computerized tomography scans were performed immediately postoperatively and every 4 weeks until they were euthanized. Sagittal histologic sections were evaluated for bone histogenesis and location, cellular infiltration of the graft/substitute, and bone remodeling activity. Significant histologic differences in the developing fusion appeared between the 3 rhBMP-2/ACS treatment groups at 4 and 12 weeks. At 4 weeks, bone formation appeared to originate at the transverse process and the intertransverse membrane. Cellular infiltration was greatest in granular ceramic groups compared with matrix ceramic group. Minimal to no residual ACS was identified at the early time point. At 12 weeks, marked ceramic remodeling was observed with continued bone formation noted in all carrier groups. At the early time period, histology showed that bone formation appeared to originate at the transverse processes and the intertransverse membrane, indicating that the dorsal muscle bed may not be the only location for bone formation. Histology also showed that the collagen carrier for rhBMP-2 is mostly resorbed by 4 weeks. Our results and previous literature indicate that ceramic bulking agents are needed to provide resistance to compression caused by paraspinal muscles on the fusion bed in the posterolateral environment. Histology showed that ceramic bulking agents may offer long-term scaffolding and a structure to supporting bone formation of the developing fusion mass.

GGA + U studies of the early actinide mononitrides and dinitrides

NASA Astrophysics Data System (ADS)

Obodo, K. O.; Chetty, N.

2013-11-01

We present a detailed comparative study of the electronic and mechanical properties of the early actinide mononitrides and dinitrides within the framework of the Perdew-Burke-Ernzerhof generalized gradient approximation (GGA [PBE]) and GGA + U implementations of density functional theory with the inclusion of spin-orbit coupling. The dependence of selected observables of these materials on the effective U-parameter is investigated in detail. The properties include the lattice constant, bulk modulus, charge density distribution, hybridization of the atomic orbitals, energy of formation and the lattice dynamics. The inclusion of the Hubbard U parameter results in a proper description of the 5f electrons, and is subsequently used in the determination of the structural and electronic properties of these compounds. The mononitrides and dinitrides of the early actinides are metallic except for UN2, which is a semiconductor. These actinide nitrides are non-magnetic with the exception of UN, NpN, PuN, NpN2 and PuN2 that are magnetic systems with orbital-dependent magnetic moments oriented in the z-axis. We observed that ThN2 is elastically unstable to isotropic pressure. We discovered that UN2 is thermodynamically unstable, but may be stabilized by N vacancy formation.

Early Detection | Division of Cancer Prevention

Cancer.gov

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Amygdalohippocampal MR volume measurements in the early stages of Alzheimer disease

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lehericy, S.; Baulac, M.; Chiras, J.

1994-05-01

To evaluate the accuracy of hippocampal and amygdala volume measurements in diagnosing patients in the early stages of Alzheimer disease. Measurements of the hippocampal formation, amygdala, amygdalohippocampal complex (the two measurements summed), caudate nucleus, and ventricles, normalized for total intracranial volume, were obtained on coronal sections (1.5 T, 400/13 [repetition time/echo time], 5 mm) of 13 patients in the mild (minimental status {ge} 21) and five patients in the moderate stages of Alzheimer disease (10 < minimental status < 21), and eight age-matched control subjects. For patients with a minimental status score of 21 or greater, atrophy was significant formore » the amygdala and hippocampal formation (-36% and -25% for amygdala/total intracranial volume and hippocampal formation/total intracranial volume, respectively), but not for the caudate nucleus. No significant ventricular enlargement was found. For patients with a minimental status score less than 21, atrophy was more severe in all structures studied (amygdala/total intracranial volume -40%; hippocampal formation/total intracranial volume, -45%; caudate nucleus/total intracranial volume, -21%), and ventricles were enlarged (63%). No overlap was found between Alzheimer disease and control values for the amygdalohippocampal volume, even in the mild stages of the disease. In Alzheimer disease patients, hippocampal formation volumes correlated with the minimental status. Hippocampal and amygdala atrophy is marked and significant in the mild stages of Alzheimer disease. Volumetric measurements of the amygdala and the amygdalohippocampal complex appear more accurate than those of the hippocampal formation alone in distinguishing patients with Alzheimer disease. 46 refs., 8 figs., 2 tabs.« less

Geology of the Jewel Cave SW Quadrangle, Custer County, South Dakota

USGS Publications Warehouse

Braddock, William A.

1963-01-01

The Jewel Cave SW quadrangle is in the southwestern part of the Black Hills in Custer County, S. Dak., about midway between Edgemont, S. Dak., and Newcastle, Wyo. All the rocks that crop out within the quadrangle are of sedimentary origin and range in age from Pennsylvanian to Early Cretaceous. The Minnesota Formation of Pennsylvania and Permian age, which is about 1,000 feet thick, was studied in outcrop and from two diamond-drill cores. In the subsurface the upper part of the formation consists of gray sandstone, very fine grained dolomite, and anhydrite. The anhydrite has been leached from the formation near the outcrop, perhaps in the early part of the Cenozoic Era, and the resulting subsidence has produced collapse breccias in the Minnelusa and milder deformation in the overlying units. In the collapse breccias the rocks have been oxidized and are red, whereas in the subsurface they are gray. The anhydrite cement of the subsurface sandstone has been replaced by calcite, and the dolomite beds have been partially converted to limestone. The Opeche Formation of Permian age consists of 75 to 115 feet of red siltstone and shale and two thin gypsum beds. The Minnekahta Limestone of Permian age is about 40 feet thick. The Spearfish Formation of Permian and Triassic age is about 550 feet thick and consists of red siltstone red sandstone, dolomite, and gypsum. The dolomite and gypsum beds are restricted to the lower half of the formation. In the northeast corner of the quadrangle the gypsum beds have been dissolved by ground water. The Sundance Formation of Late Jurassic age is divided into five members that have a total thickness of about 360 feet. The Morrison Formation of Late Jurassic age ranges in thickness from 60 to 120 feet. It consists of blocky weathering noncarbonaceous mudstone and subordinate beds of limestone and sandstone. The Inyan Kara Group of Early Cretaceous age has been subdivided into the Lakota Formation and the Fall River Formation. The Lakota Formation consists of 200 to 300 feet of carbonaceous siltstone blocky-weathering claystone, and fine-grained to conglomeratic sandstone. These rocks were deposited in stream channels, flood plains, and ponds. The Fall River Formation is about 110 to 130 feet thick. Along the northeast side of the outcrop the formation consists of fine- to medium-grained sandstone, which forms an elongate body at least 1-1/2 miles wide and more than 25 miles long. To the southwest the formation consists of thinly stratified interbedded sandstone, carbonaceous siltstone, and varicolored mudstone. The Skull Creek and Mowry Shales of Early Cretaceous age consist of black fissile shale. The Mowry contains abundant fish scales and weathers to a silver gray. Alluvium fills the bottom of many intermittent streams, and small gravel-covered terraces mark the former high levels of these streams. Gravel, which caps hills at altitudes of 4,460 to 4,620 feet, is believed to have been deposited by a Pleistocene stream that drained southeastward toward the town of Minnekahta. Many landslides are present along the northward- and eastward-facing scarp of the Inyan Kara hogback. The Dewey fault, trending N. 75 deg E., crosses the quadrangle. It is probably a vertical dip-slip fault, and has an apparent displacement of 250 to 440 feet. Two northwest-trending anticlines are in the quadrangle - one extends from the Edgemont NE quadrangle to near the center of the Jewel Cave SW quadrangle, and the other is limited to the center of the Jewel Cave SW quadrangle. Collapse structures, which were produced by the solution of anhydrite, are (a) breccias in the Minnelusa Formation, (b) limestone-dolomite breccias in the Spearfish Formation, (c) undulations and normal faults in the formations overlying the Minnelusa and (d) breccia pipes that extend upward from the Minnelusa to at least as high as the Lakota Formation. The leaching probably occurred in early Cenozoic time. Minor deformationa

Behavioral and anatomical consequences of early versus late symbol training in macaques.

PubMed

Srihasam, Krishna; Mandeville, Joseph B; Morocz, Istvan A; Sullivan, Kevin J; Livingstone, Margaret S

2012-02-09

Distinct brain regions, reproducible from one person to the next, are specialized for processing different kinds of human expertise, such as face recognition and reading. Here, we explore the relationship between age of learning, learning ability, and specialized brain structures. Specifically, we ask whether the existence of reproducible cortical domains necessarily means that certain abilities are innate, or innately easily learned, or whether reproducible domains can be formed, or refined, by interactions between genetic programs and common early experience. Functional MRI showed that intensive early, but not late, experience caused the formation of category-selective regions in macaque temporal lobe for stimuli never naturally encountered by monkeys. And behaviorally, early training produced more fluent processing of these stimuli than the same training in adults. One explanation for these results is that in higher cortical areas, as in early sensory areas, experience drives functional clustering and functional clustering determines how that information is processed. Copyright © 2012 Elsevier Inc. All rights reserved.

Lobe-cleft instability in the buoyant gravity current generated by estuarine outflow

NASA Astrophysics Data System (ADS)

Horner-Devine, Alexander R.; Chickadel, C. Chris

2017-05-01

Gravity currents represent a broad class of geophysical flows including turbidity currents, powder avalanches, pyroclastic flows, sea breeze fronts, haboobs, and river plumes. A defining feature in many gravity currents is the formation of three-dimensional lobes and clefts along the front and researchers have sought to understand these ubiquitous geophysical structures for decades. The prevailing explanation is based largely on early laboratory and numerical model experiments at much smaller scales, which concluded that lobes and clefts are generated due to hydrostatic instability exclusively in currents propagating over a nonslip boundary. Recent studies suggest that frontal dynamics change as the flow scale increases, but no measurements have been made that sufficiently resolve the flow structure in full-scale geophysical flows. Here we use thermal infrared and acoustic imaging of a river plume to reveal the three-dimensional structure of lobes and clefts formed in a geophysical gravity current front. The observed lobes and clefts are generated at the front in the absence of a nonslip boundary, contradicting the prevailing explanation. The observed flow structure is consistent with an alternative formation mechanism, which predicts that the lobe scale is inherited from subsurface vortex structures.

Biogenic manganese oxide nanoparticle formation by a multimeric multicopper oxidase Mnx.

PubMed

Romano, Christine A; Zhou, Mowei; Song, Yang; Wysocki, Vicki H; Dohnalkova, Alice C; Kovarik, Libor; Paša-Tolić, Ljiljana; Tebo, Bradley M

2017-09-29

Bacteria that produce Mn oxides are extraordinarily skilled engineers of nanomaterials that contribute significantly to global biogeochemical cycles. Their enzyme-based reaction mechanisms may be genetically tailored for environmental remediation applications or bioenergy production. However, significant challenges exist for structural characterization of the enzymes responsible for biomineralization. The active Mn oxidase in Bacillus sp. PL-12, Mnx, is a complex composed of a multicopper oxidase (MCO), MnxG, and two accessory proteins, MnxE and MnxF. MnxG shares sequence similarity with other, structurally characterized MCOs. MnxE and MnxF have no similarity to any characterized proteins. The ~200 kDa complex has been recalcitrant to crystallization, so its structure is unknown. Here, we show that native mass spectrometry defines the subunit topology and copper binding of Mnx, while high-resolution electron microscopy visualizes the protein and nascent Mn oxide minerals. These data provide critical structural information for understanding Mn biomineralization by such unexplored enzymes.Significant challenges exist for structural characterization of enzymes responsible for biomineralization. Here the authors show that native mass spectrometry and high resolution electron microscopy can define the subunit topology and copper binding of a manganese oxidizing complex, and describe early stage formation of its mineral products.

Early structural development in melt-quenched polymer PTT from atomistic molecular dynamic simulations

NASA Astrophysics Data System (ADS)

Hsieh, Min-Kang; Lin, Shiang-Tai

2009-12-01

Molecular dynamics simulations are performed to study the initial structural development in poly(trimethylene terephthalate) (PTT) when quenched below its melting point. The development of local ordering has been observed in our simulations. The thermal properties, such as the glass transition temperature (Tg) and the melting temperature (Tm), determined from our simulations are in reasonable agreement with experimental values. It is found that, between these two temperatures, the number of local structures quickly increases during the thermal relaxation period soon after the system is quenched and starts to fluctuate afterwards. The formation and development of local structures is found to be driven mainly by the torsional and van der Waals forces and follows the classical nucleation-growth mechanism. The variation of local structures' fraction with temperature exhibits a maximum between Tg and Tm, resembling the temperature dependence of the crystallization rate for most polymers. In addition, the backbone torsion distribution for segments within the local structures preferentially reorganizes to the trans-gauche-gauche-trans (t-g-g-t) conformation, the same as that in the crystalline state. As a consequence, we believe that such local structural ordering could be the baby nuclei that have been suggested to form in the early stage of polymer crystallization.

How self-interactions can reconcile sterile neutrinos with cosmology.

PubMed

Hannestad, Steen; Hansen, Rasmus Sloth; Tram, Thomas

2014-01-24

Short baseline neutrino oscillation experiments have shown hints of the existence of additional sterile neutrinos in the eV mass range. However, such neutrinos seem incompatible with cosmology because they have too large of an impact on cosmic structure formation. Here we show that new interactions in the sterile neutrino sector can prevent their production in the early Universe and reconcile short baseline oscillation experiments with cosmology.

Evidence for Dynamically Driven Formation of the GW170817 Neutron Star Binary in NGC 4993

NASA Astrophysics Data System (ADS)

Palmese, A.; Hartley, W.; Tarsitano, F.; Conselice, C.; Lahav, O.; Allam, S.; Annis, J.; Lin, H.; Soares-Santos, M.; Tucker, D.; Brout, D.; Banerji, M.; Bechtol, K.; Diehl, H. T.; Fruchter, A.; García-Bellido, J.; Herner, K.; Levan, A. J.; Li, T. S.; Lidman, C.; Misra, K.; Sako, M.; Scolnic, D.; Smith, M.; Abbott, T. M. C.; Abdalla, F. B.; Benoit-Lévy, A.; Bertin, E.; Brooks, D.; Buckley-Geer, E.; Carnero Rosell, A.; Carrasco Kind, M.; Carretero, J.; Castander, F. J.; Cunha, C. E.; D'Andrea, C. B.; da Costa, L. N.; Davis, C.; DePoy, D. L.; Desai, S.; Dietrich, J. P.; Doel, P.; Drlica-Wagner, A.; Eifler, T. F.; Evrard, A. E.; Flaugher, B.; Fosalba, P.; Frieman, J.; Gaztanaga, E.; Gerdes, D. W.; Giannantonio, T.; Gruen, D.; Gruendl, R. A.; Gschwend, J.; Gutierrez, G.; Honscheid, K.; Jain, B.; James, D. J.; Jeltema, T.; Johnson, M. W. G.; Johnson, M. D.; Krause, E.; Kron, R.; Kuehn, K.; Kuhlmann, S.; Kuropatkin, N.; Lima, M.; Maia, M. A. G.; March, M.; Marshall, J. L.; McMahon, R. G.; Menanteau, F.; Miller, C. J.; Miquel, R.; Neilsen, E.; Ogando, R. L. C.; Plazas, A. A.; Reil, K.; Romer, A. K.; Sanchez, E.; Schindler, R.; Smith, R. C.; Sobreira, F.; Suchyta, E.; Swanson, M. E. C.; Tarle, G.; Thomas, D.; Thomas, R. C.; Walker, A. R.; Weller, J.; Zhang, Y.; Zuntz, J.

2017-11-01

We present a study of NGC 4993, the host galaxy of the GW170817 gravitational-wave event, the GRB 170817A short gamma-ray burst (sGRB), and the AT 2017gfo kilonova. We use Dark Energy Camera imaging, AAT spectra, and publicly available data, relating our findings to binary neutron star (BNS) formation scenarios and merger delay timescales. NGC 4993 is a nearby early-type galaxy, with an I-band Sérsic index n = 4.0 and low asymmetry (A = 0.04 ± 0.01). These properties are unusual for sGRB hosts. However, NGC 4993 presents shell-like structures and dust lanes indicative of a recent galaxy merger, with the optical transient located close to a shell. We constrain the star formation history (SFH) of the galaxy assuming that the galaxy merger produced a star formation burst, but find little to no ongoing star formation in either spatially resolved broadband SED or spectral fitting. We use the best-fit SFH to estimate the BNS merger rate in this type of galaxy, as {R}{NSM}{gal}={5.7}-3.3+0.57× {10}-6{{yr}}-1. If star formation is the only considered BNS formation scenario, the expected number of BNS mergers from early-type galaxies detectable with LIGO during its first two observing seasons is {0.038}-0.022+0.004, as opposed to ˜0.5 from all galaxy types. Hypothesizing that the binary formed due to dynamical interactions during the galaxy merger, the subsequent time elapsed can constrain the delay time of the BNS coalescence. By using velocity dispersion estimates and the position of the shells, we find that the galaxy merger occurred t mer ≲ 200 Myr prior to the BNS coalescence.

Evidence for Dynamically Driven Formation of the GW170817 Neutron Star Binary in NGC 4993

DOE Office of Scientific and Technical Information (OSTI.GOV)

Palmese, A.; Hartley, W.; Tarsitano, F.

Here, we present a study of NGC 4993, the host galaxy of the GW170817 gravitational-wave event, the GRB 170817A short gamma-ray burst (sGRB), and the AT 2017gfo kilonova. We use Dark Energy Camera imaging, AAT spectra, and publicly available data, relating our findings to binary neutron star (BNS) formation scenarios and merger delay timescales. NGC 4993 is a nearby early-type galaxy, with an i-band Sérsic index n = 4.0 and low asymmetry (A = 0.04 ± 0.01). These properties are unusual for sGRB hosts. However, NGC 4993 presents shell-like structures and dust lanes indicative of a recent galaxy merger, with the optical transient located close to a shell. We constrain the star formation history (SFH) of the galaxy assuming that the galaxy merger produced a star formation burst, but find little to no ongoing star formation in either spatially resolved broadband SED or spectral fitting. We use the best-fit SFH to estimate the BNS merger rate in this type of galaxy, asmore » $${R}_{\\mathrm{NSM}}^{\\mathrm{gal}}={5.7}_{-3.3}^{+0.57}\\times {10}^{-6}{\\mathrm{yr}}^{-1}$$. If star formation is the only considered BNS formation scenario, the expected number of BNS mergers from early-type galaxies detectable with LIGO during its first two observing seasons is $${0.038}_{-0.022}^{+0.004}$$, as opposed to ~0.5 from all galaxy types. Hypothesizing that the binary formed due to dynamical interactions during the galaxy merger, the subsequent time elapsed can constrain the delay time of the BNS coalescence. By using velocity dispersion estimates and the position of the shells, we find that the galaxy merger occurred t mer $$\\lesssim$$ 200 Myr prior to the BNS coalescence.« less

Evidence for Dynamically Driven Formation of the GW170817 Neutron Star Binary in NGC 4993

DOE PAGES

Palmese, A.; Hartley, W.; Tarsitano, F.; ...

2017-11-09

Here, we present a study of NGC 4993, the host galaxy of the GW170817 gravitational-wave event, the GRB 170817A short gamma-ray burst (sGRB), and the AT 2017gfo kilonova. We use Dark Energy Camera imaging, AAT spectra, and publicly available data, relating our findings to binary neutron star (BNS) formation scenarios and merger delay timescales. NGC 4993 is a nearby early-type galaxy, with an i-band Sérsic index n = 4.0 and low asymmetry (A = 0.04 ± 0.01). These properties are unusual for sGRB hosts. However, NGC 4993 presents shell-like structures and dust lanes indicative of a recent galaxy merger, with the optical transient located close to a shell. We constrain the star formation history (SFH) of the galaxy assuming that the galaxy merger produced a star formation burst, but find little to no ongoing star formation in either spatially resolved broadband SED or spectral fitting. We use the best-fit SFH to estimate the BNS merger rate in this type of galaxy, asmore » $${R}_{\\mathrm{NSM}}^{\\mathrm{gal}}={5.7}_{-3.3}^{+0.57}\\times {10}^{-6}{\\mathrm{yr}}^{-1}$$. If star formation is the only considered BNS formation scenario, the expected number of BNS mergers from early-type galaxies detectable with LIGO during its first two observing seasons is $${0.038}_{-0.022}^{+0.004}$$, as opposed to ~0.5 from all galaxy types. Hypothesizing that the binary formed due to dynamical interactions during the galaxy merger, the subsequent time elapsed can constrain the delay time of the BNS coalescence. By using velocity dispersion estimates and the position of the shells, we find that the galaxy merger occurred t mer $$\\lesssim$$ 200 Myr prior to the BNS coalescence.« less

Thymosin α1 modifies podosome architecture and promptly stimulates the expression of podosomal markers in mature macrophages.

PubMed

Serafino, Annalucia; Andreola, Federica; Pittaluga, Eugenia; Krasnowska, Ewa K; Nicotera, Giuseppe; Sferrazza, Gianluca; Sinibaldi Vallebona, Paola; Pierimarchi, Pasquale; Garaci, Enrico

2015-01-01

The immunomodulatory activity of thymosin α1 (Tα1) on innate immunity has been extensively described, but its mechanism of action is not completely understood. We explored the possibility that Tα1-stimulation could affect the formation of podosomes, the highly dynamic, actin-rich, adhesion structures involved in macrophage adhesion/chemotaxis. The following methods were used: optical and scanning electron microscopy for analyzing morphology of human monocyte-derived macrophages (MDMs); time-lapse imaging for visualizing the time-dependent modifications induced at early times by Tα1 treatment; confocal microscopy and Western blot for analyzing localization and expression of podosome components; and Matrigel Migration Assay and zymography for testing MDM invasive ability and metalloproteinase secretion. We obtained data to support that Tα1 could affect MDM motility, invasion and chemotaxis by promptly stimulating assembly and disassembly of podosomal structures. At very early times after its addition to cell culture medium and within 1 h of treatment, Tα1 induces modifications in MDM morphology and in podosomal components that are suggestive of increased podosome turnover. Since impairment of podosome formation leads to reduced innate immunity and is associated with several immunodeficiency disorders, we confirm the validity of Tα1 as a potent activator of innate immunity and suggest possible new clinical application of this thymic peptide.

The Neonatal Connectome During Preterm Brain Development

PubMed Central

van den Heuvel, Martijn P.; Kersbergen, Karina J.; de Reus, Marcel A.; Keunen, Kristin; Kahn, René S.; Groenendaal, Floris; de Vries, Linda S.; Benders, Manon J.N.L.

2015-01-01

The human connectome is the result of an elaborate developmental trajectory. Acquiring diffusion-weighted imaging and resting-state fMRI, we studied connectome formation during the preterm phase of macroscopic connectome genesis. In total, 27 neonates were scanned at week 30 and/or week 40 gestational age (GA). Examining the architecture of the neonatal anatomical brain network revealed a clear presence of a small-world modular organization before term birth. Analysis of neonatal functional connectivity (FC) showed the early formation of resting-state networks, suggesting that functional networks are present in the preterm brain, albeit being in an immature state. Moreover, structural and FC patterns of the neonatal brain network showed strong overlap with connectome architecture of the adult brain (85 and 81%, respectively). Analysis of brain development between week 30 and week 40 GA revealed clear developmental effects in neonatal connectome architecture, including a significant increase in white matter microstructure (P < 0.01), small-world topology (P < 0.01) and interhemispheric FC (P < 0.01). Computational analysis further showed that developmental changes involved an increase in integration capacity of the connectivity network as a whole. Taken together, we conclude that hallmark organizational structures of the human connectome are present before term birth and subject to early development. PMID:24833018

Gel formation in protein amyloid aggregation: a physical mechanism for cytotoxicity.

PubMed

Woodard, Daniel; Bell, Dylan; Tipton, David; Durrance, Samuel; Burnett, Lisa Cole; Cole, Lisa; Li, Bin; Xu, Shaohua

2014-01-01

Amyloid fibers are associated with disease but have little chemical reactivity. We investigated the formation and structure of amyloids to identify potential mechanisms for their pathogenic effects. We incubated lysozyme 20 mg/ml at 55C and pH 2.5 in a glycine-HCl buffer and prepared slides on mica substrates for examination by atomic force microscopy. Structures observed early in the aggregation process included monomers, small colloidal aggregates, and amyloid fibers. Amyloid fibers were observed to further self-assemble by two mechanisms. Two or more fibers may merge together laterally to form a single fiber bundle, usually in the form of a helix. Alternatively, fibers may become bound at points where they cross, ultimately forming an apparently irreversible macromolecular network. As the fibers assemble into a continuous network, the colloidal suspension undergoes a transition from a Newtonian fluid into a viscoelastic gel. Addition of salt did not affect fiber formation but inhibits transition of fibers from linear to helical conformation, and accelerates gel formation. Based on our observations, we considered the effects of gel formation on biological transport. Analysis of network geometry indicates that amyloid gels will have negligible effects on diffusion of small molecules, but they prevent movement of colloidal-sized structures. Consequently gel formation within neurons could completely block movement of transport vesicles in neuronal processes. Forced convection of extracellular fluid is essential for the transport of nutrients and metabolic wastes in the brain. Amyloid gel in the extracellular space can essentially halt this convection because of its low permeability. These effects may provide a physical mechanism for the cytotoxicity of chemically inactive amyloid fibers in neurodegenerative disease.

Crustal extension and magmatism during the mid-Cenozoic ignimbrite flare-up in the Guazapares Mining District and Cerocahui basin regions, northern Sierra Madre Occidental, western Chihuahua, Mexico

NASA Astrophysics Data System (ADS)

Murray, Bryan Patrick

Silicic large igneous provinces are significant in the geologic record, due to their unusually extensive areal coverage (>100,000 km2) and large volumes (>250,000 km3), and may be characteristic of continental regions undergoing broad lithospheric extension. The Sierra Madre Occidental of northwestern Mexico is the biggest and best-preserved silicic large igneous province of the Cenozoic and is considered part of the extensive mid-Cenozoic ignimbrite flare-up that affected much of the southwestern North American Cordillera. Despite its size and preservation, very little is known about the geology of the Sierra Madre Occidental, and the timing and spatial extent of ignimbrite flare-up volcanism in relation to crustal extension is relatively unknown. This study presents new geologic mapping, stratigraphy, zircon U-Pb laser ablation ICP-MS dating, modal analysis, and geochemical data from the Guazapares Mining District and Cerocahui basin regions, two adjacent areas of the northern Sierra Madre Occidental in western Chihuahua. The rock exposure and topographic relief in this previously unmapped ~450 km2 area make it ideal for studying the relationships between silicic large igneous province volcanism and crustal extension. Three informal formations are identified in the study area: (1) the ca. 27.5 Ma Parajes formation, a ~1-km-thick succession of primarily welded silicic outflow ignimbrite sheets erupted from sources within ~50--100 km of the study area that were active during the Early Oligocene pulse of the mid-Cenozoic ignimbrite flare-up; (2) the ca. 27--24.5 Ma Temoris formation, composed primarily of locally erupted mafic-intermediate lavas and associated intrusions with interbedded alluvial deposits, likely related to rocks of the Southern Cordillera basaltic andesite province that were intermittently erupted across all of the northern Sierra Madre Occidental following the Early Oligocene ignimbrite pulse; and (3) the ca. 24.5--23 Ma Sierra Guazapares formation, composed of silicic vent to proximal facies ignimbrites, lavas, plugs, and reworked equivalents that record the initiation of explosive and effusive silicic fissure magmatism in the study area during the Early Miocene pulse of the mid-Cenozoic ignimbrite flare-up. The Guazapares Mining District and Cerocahui basin regions share this stratigraphy, but the rocks in the Cerocahui basin consist of a much higher proportion of alluvial deposits. The main geologic structures in the Guazapares Mining District and Cerocahui basin regions are NNW-trending normal faults, with an estimated minimum of 20% total horizontal extension. Many normal faults bound half-graben basins that show evidence of syndepositional extension. Normal faulting began by ca. 27.5 Ma during deposition of the youngest ignimbrites of the Parajes formation, concurrent with the end of the Early Oligocene silicic ignimbrite pulse of the ignimbrite flare-up to the east and before magmatism began in the study area. Preexisting normal faults localized mafic-intermediate volcanic vents of the Temoris formation and silicic vents of the Sierra Guazapares formation, and were active during deposition of these formations. In addition, the localization and timing of epithermal mineralization in the Guazapares Mining District appears to be favored where pre-to-synvolcanic extensional structures are in close association with Sierra Guazapares formation rhyolite plugs. The timing of extensional faulting and magmatism in the Guazapares Mining District and Cerocahui regions is consistent with regional-scale Middle Eocene to Early Miocene southwestward migration of active volcanism and extension in the northern Sierra Madre Occidental. Extension accompanied mafic-intermediate and silicic volcanism in the study area, and overlapped with the peak of mid-Cenozoic ignimbrite flare-up in the Sierra Madre Occidental; this supports the interpretation that there is likely a relationship between lithospheric extension and silicic large igneous province magmatism.

An Organismal CNV Mutator Phenotype Restricted to Early Human Development.

PubMed

Liu, Pengfei; Yuan, Bo; Carvalho, Claudia M B; Wuster, Arthur; Walter, Klaudia; Zhang, Ling; Gambin, Tomasz; Chong, Zechen; Campbell, Ian M; Coban Akdemir, Zeynep; Gelowani, Violet; Writzl, Karin; Bacino, Carlos A; Lindsay, Sarah J; Withers, Marjorie; Gonzaga-Jauregui, Claudia; Wiszniewska, Joanna; Scull, Jennifer; Stankiewicz, Paweł; Jhangiani, Shalini N; Muzny, Donna M; Zhang, Feng; Chen, Ken; Gibbs, Richard A; Rautenstrauss, Bernd; Cheung, Sau Wai; Smith, Janice; Breman, Amy; Shaw, Chad A; Patel, Ankita; Hurles, Matthew E; Lupski, James R

2017-02-23

De novo copy number variants (dnCNVs) arising at multiple loci in a personal genome have usually been considered to reflect cancer somatic genomic instabilities. We describe a multiple dnCNV (MdnCNV) phenomenon in which individuals with genomic disorders carry five to ten constitutional dnCNVs. These CNVs originate from independent formation incidences, are predominantly tandem duplications or complex gains, exhibit breakpoint junction features reminiscent of replicative repair, and show increased de novo point mutations flanking the rearrangement junctions. The active CNV mutation shower appears to be restricted to a transient perizygotic period. We propose that a defect in the CNV formation process is responsible for the "CNV-mutator state," and this state is dampened after early embryogenesis. The constitutional MdnCNV phenomenon resembles chromosomal instability in various cancers. Investigations of this phenomenon may provide unique access to understanding genomic disorders, structural variant mutagenesis, human evolution, and cancer biology. Copyright © 2017 Elsevier Inc. All rights reserved.

Nanoscale assembly processes revealed in the nacroprismatic transition zone of Pinna nobilis mollusc shells

PubMed Central

Hovden, Robert; Wolf, Stephan E.; Holtz, Megan E.; Marin, Frédéric; Muller, David A.; Estroff, Lara A.

2015-01-01

Intricate biomineralization processes in molluscs engineer hierarchical structures with meso-, nano- and atomic architectures that give the final composite material exceptional mechanical strength and optical iridescence on the macroscale. This multiscale biological assembly inspires new synthetic routes to complex materials. Our investigation of the prism–nacre interface reveals nanoscale details governing the onset of nacre formation using high-resolution scanning transmission electron microscopy. A wedge-polishing technique provides unprecedented, large-area specimens required to span the entire interface. Within this region, we find a transition from nanofibrillar aggregation to irregular early-nacre layers, to well-ordered mature nacre suggesting the assembly process is driven by aggregation of nanoparticles (∼50–80 nm) within an organic matrix that arrange in fibre-like polycrystalline configurations. The particle number increases successively and, when critical packing is reached, they merge into early-nacre platelets. These results give new insights into nacre formation and particle-accretion mechanisms that may be common to many calcareous biominerals. PMID:26631940

UV Observations of the Galaxy Cluster Abell 1795 with the Optical Monitor on XMM-Newton

NASA Technical Reports Server (NTRS)

Mittaz, J. P. D.; Kaastra, J. S.; Tamura, T.; Fabian, A. C.; Mushotzky, F.; Peterson, J. R.; Ikebe, Y.; Lumb, D. H.; Paerels, F.; Stewart, G.

2000-01-01

We present the results of an analysis of broad band UV observations of the central regions of Abell 1795 observed with the optical monitor on XMM-Newton. As have been found with other UV observations of the central regions of clusters of galaxies, we find evidence for star formation. However, we also find evidence for absorption in the cD galaxy on a more extended scale than has been seen with optical imaging. We also report the first UV observation of part of the filamentary structure seen in H-alpha, X-rays and very deep U band imaging. The part of the filament we see is very blue with UV colours consistent with a very early (O/B) stellar population. This is the first direct evidence of a dominant population of early type stars at the centre of Abell 1795 and implies very recent star formation. The relationship of this emission to emission at other wavebands is discussed.

Isolation of new polar granule components in Drosophila reveals P body and ER associated proteins

PubMed Central

Thomson, Travis; Liu, Niankun; Arkov, Alexey; Lehmann, Ruth; Lasko, Paul

2008-01-01

Germ plasm, a specialized cytoplasm present at the posterior of the early Drosophila embryo, is necessary and sufficient for germ cell formation. Germ plasm is rich in mitochondria and contains electron dense structures called polar granules. To identify novel polar granule components we isolated proteins that associate in early embryos with Vasa (VAS) and Tudor (TUD), two known polar granule associated molecules. We identified Maternal expression at 31B (ME31B), eIF4A, Aubergine (AUB) and Transitional Endoplasmic Reticulum 94 (TER94) as components of both VAS and TUD complexes and confirmed their localization to polar granules by immuno-electron microscopy. ME31B, eIF4A and AUB are also present in processing (P) bodies, suggesting that polar granules, which are necessary for germ line formation, might be related to P bodies. Our recovery of ER associated proteins TER94 and ME31B confirms that polar granules are closely linked to the translational machinery and to mRNP assembly. PMID:18590813

Moroccan crustal response to continental drift.

PubMed

Kanes, W H; Saadi, M; Ehrlich, E; Alem, A

1973-06-01

The formation and development of a zone of spreading beneath the continental crust resulted in the breakup of Pangea and formation of the Atlantic Ocean. The crust of Morocco bears an extremely complete record of the crustal response to this episode of mantle dynamics. Structural and related depositional patterns indicate that the African margin had stabilized by the Middle Jurassic as a marine carbonate environment; that it was dominated by tensile stresses in the early Mesozoic, resulting in two fault systems paralleling the Atlantic and Mediterranean margins and a basin and range structural-depositional style; and that it was affected by late Paleozoic metamorphism and intrusion. Mesozoic events record the latter portion of African involvement in the spreading episode; late Paleozoic thermal orogenesis might reflect the earlier events in the initiation of the spreading center and its development beneath significant continental crust. In that case, more than 100 million years were required for mantle dynamics to break up Pangea.

Merging Clusters, Cluster Outskirts, and Large Scale Filaments

NASA Astrophysics Data System (ADS)

Randall, Scott; Alvarez, Gabriella; Bulbul, Esra; Jones, Christine; Forman, William; Su, Yuanyuan; Miller, Eric D.; Bourdin, Herve; Scott Randall

2018-01-01

Recent X-ray observations of the outskirts of clusters show that entropy profiles of the intracluster medium (ICM) generally flatten and lie below what is expected from purely gravitational structure formation near the cluster's virial radius. Possible explanations include electron/ion non-equilibrium, accretion shocks that weaken during cluster formation, and the presence of unresolved cool gas clumps. Some of these mechanisms are expected to correlate with large scale structure (LSS), such that the entropy is lower in regions where the ICM interfaces with LSS filaments and, presumably, the warm-hot intergalactic medium (WHIM). Major, binary cluster mergers are expected to take place at the intersection of LSS filaments, with the merger axis initially oriented along a filament. We present results from deep X-ray observations of the virialization regions of binary, early-stage merging clusters, including a possible detection of the dense end of the WHIM along a LSS filament.

Distinctive colonization of Bacillus sp. bacteria and the influence of the bacterial biofilm on electrochemical behaviors of aluminum coatings.

PubMed

Abdoli, Leila; Suo, Xinkun; Li, Hua

2016-09-01

Formation of biofilm is usually essential for the development of biofouling and crucially impacts the corrosion of marine structures. Here we report the attachment behaviors of Bacillus sp. bacteria and subsequent formation of bacterial biofilm on stainless steel and thermal sprayed aluminum coatings in artificial seawater. The colonized bacteria accelerate the corrosion of the steel plates, and markedly enhance the anti-corrosion performances of the Al coatings in early growth stage of the bacterial biofilm. After 7days incubation, the biofilm formed on the steel is heterogeneous while exhibits homogeneous feature on the Al coating. Atomic force microscopy examination discloses inception of formation of local pitting on steel plates associated with significantly roughened surface. Electrochemical testing suggests that the impact of the bacterial biofilm on the corrosion behaviors of marine structures is not decided by the biofilm alone, it is instead attributed to synergistic influence by both the biofilm and physicochemical characteristics of the substratum materials. Copyright © 2016 Elsevier B.V. All rights reserved.

Microscopy of Alloy Formation on Arc Plasma Sintered Oxide Dispersion Strengthen (ODS) Steel

NASA Astrophysics Data System (ADS)

Bandriyana, B.; Sujatno, A.; Salam, R.; Dimyati, A.; Untoro, P.

2017-07-01

The oxide dispersed strengthened (ODS) alloys steel developed as structure material for nuclear power plants (NPP) has good resistant against creep due to their unique microstructure. Microscopy investigation on the microstructure formation during alloying process especially at the early stages was carried out to study the correlation between structure and property of ODS alloys. This was possible thanks to the arc plasma sintering (APS) device which can simulate the time dependent alloying processes. The ODS sample with composition of 88 wt.% Fe and 12 wt.% Cr powder dispersed with 1 wt.% ZrO2 nano powder was mixed in a high energy milling, isostatic compressed to form sample coins and then alloyed in APS. The Scanning Electron Microscope (SEM) with X-ray Diffraction Spectroscopy (EDX) line scan and mapping was used to characterize the microstructure and elemental composition distribution of the samples. The alloying process with unification of each Fe and Cr phase continued by the alloying formation of Fe-Cr by inter-diffusion of both Fe and Cr and followed by the improvement of the mechanical properties of hardness.

Why is Leu55→Pro55 transthyretin variant the most amyloidogenic: Insights from molecular dynamics simulations of transthyretin monomers

PubMed Central

Yang, Mingfeng; Lei, Ming; Huo, Shuanghong

2003-01-01

Transthyretin (TTR) is one of the known human amyloidogenic proteins. Its native state is a homotetramer with each monomer having a β-sandwich structure. Strong experimental evidence suggests that TTR dissociates into monomeric intermediates and that the monomers subsequently self-assemble to form amyloid deposits and insoluble fibrils. However, details on the early steps along the pathway of TTR amyloid formation are unclear, although various experimental approaches with resolutions at the molecular or residue level have provided some clues. It is highly likely that the stability and flexibility of monomeric TTR play crucial roles in the early steps of amyloid formation; thereby, it is essential to characterize initial conformational changes of TTR monomers. In this article we probe the possibility that the differences in the monomeric forms of wild-type (WT) TTR and its variants are responsible for differential amyloidogenesis. We begin with the simulations of WT, Val30→Met (V30M), and Leu55→Pro (L55P) TTR monomers. Nanosecond time scale molecular dynamics simulations at 300 K were performed using AMBER. The results indicate that the L55P-TTR monomer undergoes substantial structural changes relative to fluctuations observed in the WT and V30M TTR monomers. The observation supports earlier speculation that the L55P mutation may lead to disruption of the β-sheet structure through the disorder of the “edge strands” that might facilitate amyloidogenesis. PMID:12761393

Macro- and meso-fabric structures of peritidal tufa stromatolites along the Eastern Cape coast of South Africa

NASA Astrophysics Data System (ADS)

Edwards, Mark Joseph Kalahari; Anderson, Callum Robert; Perissinotto, Renzo; Rishworth, Gavin Midgley

2017-08-01

Stromatolites are rare in modern ecosystems due to factors associated with seawater chemistry or biological competition that restrict their formation. Actively calcifying stromatolites, near the Kei Mouth in the Eastern Cape, South Africa, were discovered in the early 2000s. Similar deposits were later described along a 200 km stretch on the south coast of Port Elizabeth. This study aims to describe the environmental setting, the macro- and meso-structures, as well as the evolution of the deposits near Port Elizabeth compared to other similar formations. Results show that the general environmental setting is consistent amongst peritidal stromatolites, including those described in this study. In all instances stromatolite growth occurs on a wave-cut rocky platform in and around rock pools. Growth is maximal within the intertidal to supratidal zone, as a result of freshwater inflow via emerging mineral springs at the base of landward slopes, and the periodic intrusion of seawater via storm surges or wave splash. In comparison with other systems, the South African stromatolite formations exhibit an additional macro-structure (beachrock/conglomerate) and four previously undescribed meso-structures: wrinkled laminar, laminar flat, rhizoliths, and blistered types. The South African stromatolites are also larger and more concentrated than other peritidal stromatolites, which could be due to this area having more suitable growth conditions.

Black Hole Mergers as Probes of Structure Formation

NASA Technical Reports Server (NTRS)

Alicea-Munoz, E.; Miller, M. Coleman

2008-01-01

Intense structure formation and reionization occur at high redshift, yet there is currently little observational information about this very important epoch. Observations of gravitational waves from massive black hole (MBH) mergers can provide us with important clues about the formation of structures in the early universe. Past efforts have been limited to calculating merger rates using different models in which many assumptions are made about the specific values of physical parameters of the mergers, resulting in merger rate estimates that span a very wide range (0.1 - 104 mergers/year). Here we develop a semi-analytical, phenomenological model of MBH mergers that includes plausible combinations of several physical parameters, which we then turn around to determine how well observations with the Laser Interferometer Space Antenna (LISA) will be able to enhance our understanding of the universe during the critical z 5 - 30 structure formation era. We do this by generating synthetic LISA observable data (total BH mass, BH mass ratio, redshift, merger rates), which are then analyzed using a Markov Chain Monte Carlo method. This allows us to constrain the physical parameters of the mergers. We find that our methodology works well at estimating merger parameters, consistently giving results within 1- of the input parameter values. We also discover that the number of merger events is a key discriminant among models. This helps our method be robust against observational uncertainties. Our approach, which at this stage constitutes a proof of principle, can be readily extended to physical models and to more general problems in cosmology and gravitational wave astrophysics.

Tandem Repeats in Proteins: Prediction Algorithms and Biological Role.

PubMed

Pellegrini, Marco

2015-01-01

Tandem repetitions in protein sequence and structure is a fascinating subject of research which has been a focus of study since the late 1990s. In this survey, we give an overview on the multi-faceted aspects of research on protein tandem repeats (PTR for short), including prediction algorithms, databases, early classification efforts, mechanisms of PTR formation and evolution, and synthetic PTR design. We also touch on the rather open issue of the relationship between PTR and flexibility (or disorder) in proteins. Detection of PTR either from protein sequence or structure data is challenging due to inherent high (biological) signal-to-noise ratio that is a key feature of this problem. As early in silico analytic tools have been key enablers for starting this field of study, we expect that current and future algorithmic and statistical breakthroughs will have a high impact on the investigations of the biological role of PTR.

Inhibition of Late and Early Phases of Cancer Metastasis by the NF-κB Inhibitor DHMEQ Derived from Microbial Bioactive Metabolite Epoxyquinomicin: A Review.

PubMed

Lin, Yinzhi; Ukaji, Tamami; Koide, Naoki; Umezawa, Kazuo

2018-03-03

We previously designed and synthesized dehydroxyepoxyquinomicin (DHMEQ) as an inhibitor of NF-κB based on the structure of microbial secondary metabolite epoxyquinomicin C. DHMEQ showed anti-inflammatory and anticancer activity in various in vivo disease models without toxicity. On the other hand, the process of cancer metastasis consists of cell detachment from the primary tumor, invasion, transportation by blood or lymphatic vessels, invasion, attachment, and formation of secondary tumor. Cell detachment from the primary tumor and subsequent invasion are considered to be early phases of metastasis, while tumor cell attachment to the tissue and secondary tumor formation the late phases. The assay system for the latter phase was set up with intra-portal-vein injection of pancreatic cancer cells. Intraperitoneal administration of DHMEQ was found to inhibit liver metastasis possibly by decreasing the expression of MMP-9 and IL-8. Also, when the pancreatic cancer cells treated with DHMEQ were inoculated into the peritoneal cavity of mice, the metastatic foci formation was inhibited. These results indicate that DHMEQ is likely to inhibit the late phase of metastasis. Meanwhile, we have recently employed three-dimensional (3D) culture of breast cancer cells for the model of early phase metastasis, since the 3D invasion just includes cell detachment and invasion into the matrix. DHMEQ inhibited the 3D invasion of breast cancer cells at 3D-nontoxic concentrations. In this way, DHMEQ was shown to inhibit the late and early phases of metastasis. Thus, DHMEQ is likely to be useful for the suppression of cancer metastasis.

The ZEUS 1 & 2 INvestigated Galaxy Reference Sample (ZINGRS): A window into galaxies in the early Universe.

NASA Astrophysics Data System (ADS)

Ferkinhoff, Carl; Hershey, Deborah; Scrabeck, Alex; Higdon, Sarah; Higdon, James L.; Tidwell, Hannah; Lamarche, Cody; Vishwas, Amit; Nikola, Thomas; Stacey, Gordon J.; Brisbin, Drew

2018-06-01

Galaxies have evolved significantly from the early Universe until today. Star formation rates, stellar and molecular gas masses, sizes and metal enrichment of galaxies have all changed significantly from early epochs until the present. Probing the physical conditions of galaxy at high redshift is vital to understanding this evolution. ZINGRS, the ZEUS 1 and 2 INvestigated Galaxy Reference Sample, provides a unique and powerful window for this work. The sample consists of more than ~30 galaxies from z ~ 1 - 4.5 for which the far-IR fine-structure lines (e.g. [CII] 158 micron, [NII] 122micron, [OIII] 88 micron) have been observed with the ZEUS-1 and 2 instruments. These lines are ideal for studying high-z systems since they require low energies for excitation, are typically optically thin, and are not susceptible to extinction from dust. ZINGRS is the largest collection of far-IR fine-structure line detections at high-z. Here we describe the sample, including extensive multifrequency supporting observations like CO & radio continuum, and summarize what we have learned so far.

Mechanical compaction directly modulates the dynamics of bile canaliculi formation.

PubMed

Wang, Yan; Toh, Yi-Chin; Li, Qiushi; Nugraha, Bramasta; Zheng, Baixue; Lu, Thong Beng; Gao, Yi; Ng, Mary Mah Lee; Yu, Hanry

2013-02-01

Homeostatic pressure-driven compaction is a ubiquitous mechanical force in multicellular organisms and is proposed to be important in the maintenance of multicellular tissue integrity and function. Previous cell-free biochemical models have demonstrated that there are cross-talks between compaction forces and tissue structural functions, such as cell-cell adhesion. However, its involvement in physiological tissue function has yet to be directly demonstrated. Here, we use the bile canaliculus (BC) as a physiological example of a multicellular functional structure in the liver, and employ a novel 3D microfluidic hepatocyte culture system to provide an unprecedented opportunity to experimentally modulate the compaction states of primary hepatocyte aggregates in a 3D physiological-mimicking environment. Mechanical compaction alters the physical attributes of the hepatocyte aggregates, including cell shape, cell packing density and cell-cell contact area, but does not impair the hepatocytes' remodeling and functional capabilities. Characterization of structural and functional polarity shows that BC formation in compact hepatocyte aggregates is accelerated to as early as 12 hours post-seeding; whereas non-compact control requires 48 hours for functional BC formation. Further dynamic immunofluorescence imaging and gene expression profiling reveal that compaction accelerated BC formation is accompanied by changes in actin cytoskeleton remodeling dynamics and transcriptional levels of hepatic nuclear factor 4α and Annexin A2. Our report not only provides a novel strategy of modeling BC formation for in vitro hepatology research, but also shows a first instance that homeostatic pressure-driven compaction force is directly coupled to the higher-order multicellular functions.

The Effects of Subsurface Bioremediation on Soil Structure, Colloid Formation, and Contaminant Transport

NASA Astrophysics Data System (ADS)

Wang, Y.; Liang, X.; Zhuang, J.; Radosevich, M.

2016-12-01

Anaerobic bioremediation is widely applied to create anaerobic subsurface conditions designed to stimulate microorganisms that degrade organic contaminants and immobilize toxic metals in situ. Anaerobic conditions that accompany such techniques also promotes microbially mediated Fe(III)-oxide mineral reduction. The reduction of Fe(III) could potentially cause soil structure breakdown, formation of clay colloids, and alternation of soil surface chemical properties. These processes could then affect bioremediation and the migration of contaminants. Column experiments were conducted to investigate the impact of anaerobic bioreduction on soil structure, hydraulic properties, colloid formation, and transport of three tracers (bromide, DFBA, and silica shelled silver nanoparticles). Columns packed with inoculated water stable soil aggregates were placed in anaerobic glovebox, and artificial groundwater media was pumped into the columns to simulate anaerobic bioreduction process for four weeks. Decent amount of soluble Fe(II) accompanied by colloids were detected in the effluent from bioreduction columns a week after initiation of bioreduction treatment, which demonstrated bioreduction of Fe(III) and formation of colloids. Transport experiments were performed in the columns before and after bioreduction process to assess the changes of hydraulic and surface chemical properties through bioreduction treatment. Earlier breakthrough of bromide and DFBA after treatment indicated alterations in flow paths (formation of preferential flow paths). Less dispersion of bromide and DFBA, and less tailing of DFBA after treatment implied breakdown of soil aggregates. Dramatically enhanced transport and early breakthrough of silica shelled silver nanoparticles after treatment supported the above conclusion of alterations in flow paths, and indicated changes of soil surface chemical properties.

Exploring the early steps of aggregation of amyloid-forming peptide KFFE

NASA Astrophysics Data System (ADS)

Wei, Guanghong; Mousseau, Normand; Derreumaux, Philippe

2004-11-01

It has been shown recently that even a tetrapeptide can form amyloid fibrils sharing all the characteristics of amyloid fibrils built from large proteins. Recent experimental studies also suggest that the toxicity observed in several neurodegenerative diseases, such as Alzheimer's disease and Creutzfeldt-Jakob disease, is not only related to the mature fibrils themselves, but also to the soluble oligomers formed early in the process of fibrillogenesis. This raises the interest in studying the early steps of the aggregation process. Although fibril formation follows the nucleation-condensation process, characterized by the presence of lag phase, the exact pathways remain to be determined. In this study, we used the activation-relaxation technique and a generic energy model to explore the process of self-assembly and the structures of the resulting aggregates of eight KFFE peptides. Our simulations show, starting from different states with a preformed antiparallel dimer, that eight chains can self-assemble to adopt, with various orientations, four possible distant oligomeric well-aligned structures of similar energy. Two of these structures show a double-layer β-sheet organization, in agreement with the structure of amyloid fibrils as observed by x-ray diffraction; another two are mixtures of dimers and trimers. Our results also suggest that octamers are likely to be below the critical size for nucleation of amyloid fibrils for small peptides.

A kiloparsec-scale hyper-starburst in a quasar host less than 1 gigayear after the Big Bang.

PubMed

Walter, Fabian; Riechers, Dominik; Cox, Pierre; Neri, Roberto; Carilli, Chris; Bertoldi, Frank; Weiss, Axel; Maiolino, Roberto

2009-02-05

The host galaxy of the quasar SDSS J114816.64+525150.3 (at redshift z = 6.42, when the Universe was less than a billion years old) has an infrared luminosity of 2.2 x 10(13) times that of the Sun, presumably significantly powered by a massive burst of star formation. In local examples of extremely luminous galaxies, such as Arp 220, the burst of star formation is concentrated in a relatively small central region of <100 pc radius. It is not known on which scales stars are forming in active galaxies in the early Universe, at a time when they are probably undergoing their initial burst of star formation. We do know that at some early time, structures comparable to the spheroidal bulge of the Milky Way must have formed. Here we report a spatially resolved image of [C ii] emission of the host galaxy of J114816.64+525150.3 that demonstrates that its star-forming gas is distributed over a radius of about 750 pc around the centre. The surface density of the star formation rate averaged over this region is approximately 1,000 year(-1) kpc(-2). This surface density is comparable to the peak in Arp 220, although about two orders of magnitude larger in area. This vigorous star-forming event is likely to give rise to a massive spheroidal component in this system.

Vascular Calcification and Stone Disease: A New Look towards the Mechanism

PubMed Central

Yiu, Allen J.; Callaghan, Daniel; Sultana, Razia; Bandyopadhyay, Bidhan C.

2015-01-01

Calcium phosphate (CaP) crystals are formed in pathological calcification as well as during stone formation. Although there are several theories as to how these crystals can develop through the combined interactions of biochemical and biophysical factors, the exact mechanism of such mineralization is largely unknown. Based on the published scientific literature, we found that common factors can link the initial stages of stone formation and calcification in anatomically distal tissues and organs. For example, changes to the spatiotemporal conditions of the fluid flow in tubular structures may provide initial condition(s) for CaP crystal generation needed for stone formation. Additionally, recent evidence has provided a meaningful association between the active participation of proteins and transcription factors found in the bone forming (ossification) mechanism that are also involved in the early stages of kidney stone formation and arterial calcification. Our review will focus on three topics of discussion (physiological influences—calcium and phosphate concentration—and similarities to ossification, or bone formation) that may elucidate some commonality in the mechanisms of stone formation and calcification, and pave the way towards opening new avenues for further research. PMID:26185749

In vivo loss of function study reveals the short stature homeobox-containing (shox) gene plays indispensable roles in early embryonic growth and bone formation in zebrafish.

PubMed

Sawada, Rie; Kamei, Hiroyasu; Hakuno, Fumihiko; Takahashi, Shin-Ichiro; Shimizu, Toshiaki

2015-02-01

Congenital loss of the SHOX gene is considered to be a genetic cause of short stature phenotype in Turner syndrome and Leri-Weill dyschondrosteosis patients. Though SHOX expression initiates during early fetal development, little is known about the embryonic roles of SHOX. The evolutionary conservation of the zebrafish shox gene and the convenience of the early developmental stages for analyses make zebrafish a preferred model. Here, we characterized structure, expression, and developmental roles of zebrafish shox through a loss-of-function approach. We found a previously undiscovered Shox protein that has both a homeodomain and an OAR-domain in zebrafish. The shox transcript emerged during the segmentation period and it increased in later stages. The predominant domains of shox expression were mandibular arch, pectoral fin, anterior notochord, rhombencephalon, and mesencephalon, suggesting that Shox is involved in bone and neural development. Translational blockade of Shox mRNA by an antisense morpholino oligo delayed embryonic growth, which was restored by the co-overexpression of morpholino-resistant Shox mRNA. At later stages, impaired Shox expression markedly delayed the calcification process in the anterior vertebral column and craniofacial bones. Our data demonstrate evolutionarily conserved Shox plays roles in early embryonic growth and in later bone formation. © 2014 Wiley Periodicals, Inc.

Early remodeling of the neocortex upon episodic memory encoding

PubMed Central

Bero, Adam W.; Meng, Jia; Cho, Sukhee; Shen, Abra H.; Canter, Rebecca G.; Ericsson, Maria; Tsai, Li-Huei

2014-01-01

Understanding the mechanisms by which long-term memories are formed and stored in the brain represents a central aim of neuroscience. Prevailing theory suggests that long-term memory encoding involves early plasticity within hippocampal circuits, whereas reorganization of the neocortex is thought to occur weeks to months later to subserve remote memory storage. Here we report that long-term memory encoding can elicit early transcriptional, structural, and functional remodeling of the neocortex. Parallel studies using genome-wide RNA sequencing, ultrastructural imaging, and whole-cell recording in wild-type mice suggest that contextual fear conditioning initiates a transcriptional program in the medial prefrontal cortex (mPFC) that is accompanied by rapid expansion of the synaptic active zone and postsynaptic density, enhanced dendritic spine plasticity, and increased synaptic efficacy. To address the real-time contribution of the mPFC to long-term memory encoding, we performed temporally precise optogenetic inhibition of excitatory mPFC neurons during contextual fear conditioning. Using this approach, we found that real-time inhibition of the mPFC inhibited activation of the entorhinal–hippocampal circuit and impaired the formation of long-term associative memory. These findings suggest that encoding of long-term episodic memory is associated with early remodeling of neocortical circuits, identify the prefrontal cortex as a critical regulator of encoding-induced hippocampal activation and long-term memory formation, and have important implications for understanding memory processing in healthy and diseased brain states. PMID:25071187

The Cannery Formation--Devonian to Early Permian arc-marginal deposits within the Alexander Terrane, Southeastern Alaska

USGS Publications Warehouse

Karl, Susan M.; Layer, Paul W.; Harris, Anita G.; Haeussler, Peter J.; Murchey, Benita L.

2011-01-01

The Cannery Formation consists of green, red, and gray ribbon chert, siliceous siltstone, graywacke-chert turbidites, and volcaniclastic sandstone. Because it contains early Permian fossils at and near its type area in Cannery Cove, on Admiralty Island in southeastern Alaska, the formation was originally defined as a Permian stratigraphic unit. Similar rocks exposed in Windfall Harbor on Admiralty Island contain early Permian bryozoans and brachiopods, as well as Mississippian through Permian radiolarians. Black and green bedded chert with subordinate lenses of limestone, basalt, and graywacke near Kake on Kupreanof Island was initially correlated with the Cannery Formation on the basis of similar lithology but was later determined to contain Late Devonian conodonts. Permian conglomerate in Keku Strait contains chert cobbles inferred to be derived from the Cannery Formation that yielded Devonian and Mississippian radiolarians. On the basis of fossils recovered from a limestone lens near Kake and chert cobbles in the Keku Strait area, the age of the Cannery Formation was revised to Devonian and Mississippian, but this revision excludes rocks in the type locality, in addition to excluding bedded chert on Kupreanof Island east of Kake that contains radiolarians of Late Pennsylvanian and early Permian age. The black chert near Kake that yielded Late Devonian conodonts is nearly contemporaneous with black chert interbedded with limestone that also contains Late Devonian conodonts in the Saginaw Bay Formation on Kuiu Island. The chert cobbles in the conglomerate in Keku Strait may be derived from either the Cannery Formation or the Saginaw Bay Formation and need not restrict the age of the Cannery Formation, regardless of their source. The minimum age of the Cannery Formation on both Admiralty Island and Kupreanof Island is constrained by the stratigraphically overlying fossiliferous Pybus Formation, of late early and early late Permian age. Because bedded radiolarian cherts on both Admiralty and Kupreanof Islands contain radiolarians as young as Permian, the age of the Cannery Formation is herein extended to Late Devonian through early Permian, to include the early Permian rocks exposed in its type locality. The Cannery Formation is folded and faulted, and its stratigraphic thickness is unknown but inferred to be several hundred meters. The Cannery Formation represents an extended period of marine deposition in moderately deep water, with slow rates of deposition and limited clastic input during Devonian through Pennsylvanian time and increasing argillaceous, volcaniclastic, and bioclastic input during the Permian. The Cannery Formation comprises upper Paleozoic rocks in the Alexander terrane of southeastern Alaska. In the pre-Permian upper Paleozoic, the tectonic setting of the Alexander terrane consisted of two or more evolved oceanic arcs. The lower Permian section is represented by a distinctive suite of rocks in the Alexander terrane, which includes sedimentary and volcanic rocks containing early Permian fossils, metamorphosed rocks with early Permian cooling ages, and intrusive rocks with early Permian cooling ages, that form discrete northwest-trending belts. After restoration of 180 km of dextral displacement of the Chilkat-Chichagof block on the Chatham Strait Fault, these belts consist, from northeast to southwest, of (1) bedded chert, siliceous argillite, volcaniclastic turbidites, pillow basalt, and limestone of the Cannery Formation and the Porcupine Slate of Gilbert and others (1987); (2) greenschist-facies Paleozoic metasedimentary and metavolcanic rocks that have Permian cooling ages; (3) silty limestone and calcareous argillite interbedded with pillow basalt and volcaniclastic rocks of the Halleck Formation and the William Henry Bay area; and (4) intermediate-composition and syenitic plutons. These belts correspond to components of an accretionary complex, contemporary metamorphic rocks, forearc-basin deposits,

Structure and dynamics of optically directed self-assembly of nanoparticles

PubMed Central

Roy, Debjit; Mondal, Dipankar; Goswami, Debabrata

2016-01-01

Self-assembly of nanoparticles leading to the formation of colloidal clusters often serves as the representative analogue for understanding molecular assembly. Unravelling the in situ structure and dynamics of such clusters in liquid suspensions is highly challenging. Presently colloidal clusters are first isolated from their generating environment and then their structures are probed by light scattering methods. In order to measure the in situ structure and dynamics of colloidal clusters, we have generated them using the high-repetition-rate femtosecond laser pulse optical tweezer. Since the constituent of our dimer, trimer or tetramer clusters are 250 nm radius two-photon resonant fluorophore coated nanospheres under the optical trap, they inherently produce Two-Photon Fluorescence, which undergo intra-nanosphere Fluorescence Energy Transfer. This unique energy transfer signature, in turn, enables us to visualize structures and orientations of these colloidal clusters during the process of their formation and subsequent dynamics in a liquid suspension. We also show that due to shape-birefringence, orientation and structural control of these colloidal clusters are possible as the polarization of the trapping laser is changed from linear to circular. We thus report important progress in sampling the smallest possible aggregates of nanoparticles, dimers, trimers or tetramers, formed early in the self-assembly process. PMID:27006305

Jurassic carbonate microfacies, sea-level changes and the Toarcian anoxic event in the Tethys Himalaya (South Tibet)

NASA Astrophysics Data System (ADS)

Han, Zhong; Hu, Xiumian; Garzanti, Eduardo

2016-04-01

Detailed microfacies analysis of carbonate rocks from the Tingri and Nyalam areas of South Tibet allowed us to reconstruct the evolution of sedimentary environments during the Early to Middle Jurassic. Based on texture, sedimentary structure, grain composition and fossil content of about 500 thin sections, 17 microfacies overall were identified, and three evolutionary stages were defined. Stage 1 (Rhaetian?-lower Sinemurian Zhamure Formation) was characterized by siliciclastic and mixed siliciclastic-carbonate sedimentation on a barrier shore environment, stage 2 (upper Sinemurian-Pliensbachian Pupuga Formation) by high-energy grainstones with rich benthic faunas thriving on a carbonate platform, and stage 3 (Toarcian-lower Bajocian Nieniexiongla Formation) by low-energy mudstones intercalated with frequent storm layers on a carbonate ramp. Besides, Carbon isotope analyses (δ13Ccarb and δ13Corg) were performed on the late Pliensbachian-early Toarcian interval, and the organic matter recorded a pronounced stepped negative excursion -4.5‰ corresponding to characteristics of the early Toarcian oceanic anoxic event globally, which began just below the stage 2-stage 3 facies shifting boundary. The comparison between the Tethys Himalaya (South Tibet) and the tropical/subtropical zones of the Western Tethys and Panthalassa was carried out to discuss the factors controlling sedimentary evolution. The change from stage 1 to stage 2 was possibly induced by sea-level rise, when the Tibetan Tethys Himalaya was located at tropical/subtropical latitudes in suitable climatic and ecological conditions for carbonate sedimentation. The abrupt change from stage 2 to stage 3 is interpreted as a consequence of the early Toarcian oceanic anoxic event, accompanied by obvious carbon-isotope negative excursion and sea-level rise. The failed recovery from the carbonate crisis in the early Bajocian, with continuing deposition on a low-energy carbonate ramp, is ascribed to the tectonic moving towards higher latitudes.

Extensional Tectonics and Sedimentary Architecture Using 3-D Seismic Data: An Example from Hydrocarbon-Bearing Mumbai Offshore Basin, West Coast of India

NASA Astrophysics Data System (ADS)

Mukhopadhyay, D. K.; Bhowmick, P. K.; Mishra, P.

2016-12-01

In offshore sedimentary basins, analysis of 3-D seismic data tied with well log data can be used to deduce robust isopach and structure contour maps of different stratigraphic formations. The isopach maps give depocenters whereas structure contour maps give structural relief at a specific time. Combination of these two types of data helps us decipher horst-graben structures, sedimentary basin architecture and tectono-stratigraphic relations through Tertiary time. Restoration of structural cross sections with back-stripping of successively older stratigraphic layers leads to better understand tectono-sedimentary evolution of a basin. The Mumbai (or Bombay) Offshore Basin is the largest basin off the west coast of India and includes Bombay High giant oil/gas field. Although this field was discovered in 1974 and still producing, the basin architecture vis-à-vis structural evolution are not well documented. We take the approach briefly outlined above to study in detail three large hydrocarbon-bearing structures located within the offshore basin. The Cretaceous Deccan basalt forms the basement and hosts prodigal thickness (> 8 km at some localities) of Tertiary sedimentary formations.A two stage deformation is envisaged. At the first stage horst and graben structures formed due to approximately E-W extensional tectonics. This is most spectacularly seen at the basement top level. The faults associated with this extension strike NNW. At the second stage of deformation a set of ENE-striking cross faults have developed leading to the formation of transpressional structures at places. High rate of early sedimentation obliterated horst-graben architecture to large extent. An interesting aspect emerges is that the all the large-scale structures have rather low structural relief. However, the areal extent of such structures are very large. Consequently, these structures hold commercial quantities of oil/gas.

Convective Differentiation of the Earth's Mantle

NASA Astrophysics Data System (ADS)

Hansen, U.; Schmalzl, J.; Stemmer, K.

2007-05-01

The differentiation of the Earth is likely to be influenced by convective motions within the early mantle. Double- diffusive convection (d.d.c), driven by thermally and compositionally induced density differences is considered as a vital mechanism behind the dynamic differentiation of the early mantle.. We demonstrate that d.d.c can lead to layer formation on a planetary scale in the diffusive regime where composition stabilizes the system whil heat provides the destabilizing force. Choosing initial conditions in which a stable compositional gradient overlies a hot reservoir we mimic the situation of a planet in a phase after core formation. Differently from earlier studies we fixed the temperature rather than the heat flux at the lower boundary, resembling a more realistic condition for the core-mantle boundary. We have carried out extended series of numerical experiments, ranging from 2D calculations in constant viscosity fluids to fully 3D experiments in spherical geometry with strongly temperature dependent viscosity. The buoyancy ratio R and the Lewis number Le are the important dynamical parameters. In all scenarios we could identify a parameter regime where the non-layered initial structure developed into a state consisting of several, mostly two layers. Initially plumes from the bottom boundary homogenize a first layer which subsequently thickens. The bottom layer heats up and then convection is initiated in the top layer. This creates dynamically (i.e. without jump in the material behavior) a stack of separately convecting layers. The bottom layer is significantly thicker than the top layer. Strongly temperature dependent viscosity leads to a more complex evolution The formation of the bottom layer is followed by the generation of several layers on top. Finally the uppermost layer starts to convect. In general, the multilayer structure collapses into a two layer system. We employed a numerical technique, allowing for a diffusion free treatment of the compositional field. In each case a similar evolution has been observed. This indicates that a temporary formation of layered structures in planetary interiors is a typical phenomenon. Moreover, in this scenario, plate tectonics appears only in later stages of the evolution.

Geologic map of the Vail East quadrangle, Eagle County, Colorado

USGS Publications Warehouse

Kellogg, Karl S.; Bryant, Bruce; Redsteer, Margaret H.

2003-01-01

New 1:24,000-scale geologic mapping along the Interstate-70 urban corridor in western Colorado, in support of the State/USGS Cooperative Geologic Mapping Project, is contributing to a more complete understanding of the stratigraphy, structure, tectonic evolution, and hazard potential of this rapidly developing region. The 1:24,000-scale Vail East quadrangle straddles the Gore fault system, the western structural boundary of the Gore Range. The Gore fault system is a contractional structure that has been recurrently active since at least the early Paleozoic and marks the approximate eastern boundary of the Central Colorado trough, a thick late Paleozoic depocenter into which thousands of meters of clastic sediment were deposited from several uplifts, including the ancestral Front Range. The Gore fault was active during both the late Paleozoic and Upper Cretaceous-lower Tertiary (Laramide) deformations. In addition, numerous north-northwest faults that cut the crystalline rocks of the Gore Range were active during at least 5 periods, the last of which was related to Neogene uplift of the Gore Range and formation of the northern Rio Grande rift. Early Proterozoic crystalline rocks underlie the high Gore Range, north and east of the Gore fault system. These rocks consist predominantly of migmatitic biotite gneiss intruded by mostly granitic rocks of the 1.667-1.750 Ma Cross Creek batholith, part of the 1,667-1,750 Ma Routt Plutonic Suite (Tweto, 1987). Southwest of the Gore fault, a mostly gently south-dipping sequence of Pennsylvanian Mimturn Formation, as thick as 1,900 m, and the Permian and Pennsylvanian Maroon Formation (only the basal several hundred meters are exposed in the quadrangle)were shed from the ancestral Front Range and overlie a thin sequence of Devonian and Cambrian rocks. The Minturn Formation is a sequence of interlayered pink, maroon, and gray conglomerate, sandstone, shale, and marine limestone. The Maroon Formation is mostly reddish conglomerate and sandstone. Glacial till of both the middle Pleistocene Bull Lake and late Pleistocene Pinedale glaciations are well exposed along parts of the Gore Creek valley and its tributaries, although human development has profoundly altered the outcrop patterns along the Gore Creek valley bottom. Landslides, some of which are currently active, are also mapped.

The Formation of Fe/Mg Smectite Under Mildly Acidic Conditions on Early Mars

NASA Technical Reports Server (NTRS)

Sutter, B.; Golden, D. C.; Ming, Douglas W.; Niles, P. B.

2011-01-01

The detection of Fe/Mg smectites and carbonate in Noachian and early Hesperian terrain of Mars suggests that neutral to mildly alkaline conditions prevailed during the early history of Mars. If early Mars surface geochemical conditions were neutral to moderately alkaline with a denser CO2 atmosphere than today, then large carbonates deposits should be more widely detected in Noachian terrain. Why have so few carbonate deposits been detected compared to Fe/Mg smectites? Fe/Mg smectites on early Mars formed under mildly acidic conditions, which would preclude the extensive formation of carbonate deposits. The goal of the proposed work is to evaluate the formation of Fe/Mg smectites under mildly acidic conditions.

Structural Phylogenomics Retrodicts the Origin of the Genetic Code and Uncovers the Evolutionary Impact of Protein Flexibility

PubMed Central

Caetano-Anollés, Gustavo; Wang, Minglei; Caetano-Anollés, Derek

2013-01-01

The genetic code shapes the genetic repository. Its origin has puzzled molecular scientists for over half a century and remains a long-standing mystery. Here we show that the origin of the genetic code is tightly coupled to the history of aminoacyl-tRNA synthetase enzymes and their interactions with tRNA. A timeline of evolutionary appearance of protein domain families derived from a structural census in hundreds of genomes reveals the early emergence of the ‘operational’ RNA code and the late implementation of the standard genetic code. The emergence of codon specificities and amino acid charging involved tight coevolution of aminoacyl-tRNA synthetases and tRNA structures as well as episodes of structural recruitment. Remarkably, amino acid and dipeptide compositions of single-domain proteins appearing before the standard code suggest archaic synthetases with structures homologous to catalytic domains of tyrosyl-tRNA and seryl-tRNA synthetases were capable of peptide bond formation and aminoacylation. Results reveal that genetics arose through coevolutionary interactions between polypeptides and nucleic acid cofactors as an exacting mechanism that favored flexibility and folding of the emergent proteins. These enhancements of phenotypic robustness were likely internalized into the emerging genetic system with the early rise of modern protein structure. PMID:23991065

Petrology and stratigraphy of Paleogene nonmarine sandstones, Cascade Range, Washington

USGS Publications Warehouse

Frizzell, Virgil A.

1979-01-01

The Cascade Range of Washington north of 47? latitude is composed of probable Paleozoic and Mesozoic metamorphic rocks and Mesozoic and Tertiary plutonic rocks. Several Paleogene nonmarine arkosic sandstone units fringe and in part occur within the complex crystalline core. The early to middle Eocene Chuckanut Formation is present on the west side of the crystalline core in the western foothills of the Cascades. The early to middle Eocene Swauk Formation partially encircles the Mt. Stuart massif of the central Cascades. In the western foothills of the Cascades, between the main body of Chuckanut Formation near Bellingham and the main outcrop area of the Swauk Formation south of Mt. Stuart, many smaller bodies of arkosic sandstone have variously been referred to either the Swauk or Chuckanut Formations. The early Eocene Manastash Formation occurs locally in an area south of the Yakima River. The middle to late Eocene Chumstick Formation is mostly confined to the Chiwaukum graben within the crystalline core and is separated from the Swauk Formation on the southwest by the Leavenworth Fault. The Oligocene Wenatchee Formation unconformably over lies the Chumstick Formation near Wenatchee. The middle to late Eocene Roslyn Formation crops out north of the Yakima River and is underlain by the Teanaway Basalt which separates the Roslyn from the older Swauk Formation. The middle Eocene to early Oligocene Naches Formation forms a north-trending body that crosses the Yakima River and is in fault contact with both the Swauk and Manastash Formations. The middle to late Eocene Puget Group underlies the Quaternary deposits of the Puget Lowland southeast of Seattle on the western flank of the Cascades. The various formations are all composed predominantly of fine- to medium-grained sandstones with lesser amounts of interbedded shale, conglomerate and coal. Compositionally, the units are predominantly either feldspathic or litho-feldspathic subquartzose sandstones. Volcanic rocks are important constituents of the Puget Group, the Chumstick and Naches Formations, and the isolated arkosic bodies. The three older units, however, contain relatively less volcanic lithics to total lithics than do younger units, indicating perhaps the initiation of more widespread volcanic activity in middle Eocene time. Ratios of framework grain parameters show that the terrestrial sandstone units were derived from a mixed plutonic and tectonic source terrane of continental block tectonic provenance with an overprint of magmatic arc provenance. Modal analysis was performed on samples from the various sedimentary units to establish petrologic compositions, and to provide data with which to compare the different units and discuss clast provenance and tectonic regimen. Although the arkosic sandstones have generally uniform framework clast compositions, minor yet significant differences do exist between the units. Basal or basement-onlap portions of the units in particular are locally derived and differ markedly from the overall compositions of the individual units. Many coincidences of composition, age, structure, and bedrock indicate that the Chuckanut and Swauk may have originally been deposited as a single unit that since has been offset approximately 160 kilometers by right lateral strike slip motion starting about 48 Ma. If this hypothetical offset did occur, then major movement on the Straight Creek Fault is bracketed between about 48 Ma and Oligocene time.

Large Sanjiang basin groups outside of the Songliao Basin Meso-Senozoic Tectonic-sediment evolution and hydrocarbon accumulation

NASA Astrophysics Data System (ADS)

Zheng, M.; Wu, X.

2015-12-01

The basis geological problem is still the bottleneck of the exploration work of the lager Sanjiang basin groups. In general terms, the problems are including the prototype basins and basin forming mechanism of two aspects. In this paper, using the field geological survey and investigation, logging data analysis, seismic data interpretation technical means large Sanjiang basin groups and basin forming mechanism of the prototype are discussed. Main draw the following conclusions： 1. Sanjiang region group-level formation can be completely contrasted. 2. Tension faults, compressive faults, shear structure composition and structure combination of four kinds of compound fracture are mainly developed In the study area. The direction of their distribution can be divided into SN, EW, NNE, NEE, NNW, NWW to other groups of fracture. 3. Large Sanjiang basin has the SN and the EW two main directions of tectonic evolution. Cenozoic basins in Sanjiang region in group formation located the two tectonic domains of ancient Paleo-Asian Ocean and the Pacific Interchange. 4. Large Sanjiang basin has experienced in the late Mesozoic tectonic evolution of two-stage and nine times. The first stage, developmental stage basement, they are ① Since the Mesozoic era and before the Jurassic; ② Early Jurassic period; The second stage, cap stage of development, they are ③ Late Jurassic depression developmental stages of compression; ④ Early Cretaceous rifting stage; ⑤ depression in mid-Early Cretaceous period; ⑥ tensile Early Cretaceous rifting stage; ⑦ inversion of Late Cretaceous tectonic compression stage; ⑧ Paleogene - Neogene; ⑨ After recently Ji Baoquan Sedimentary Ridge. 5. Large Sanjiang basin group is actually a residual basin structure, and Can be divided into left - superimposed (Founder, Tangyuan depression, Hulin Basin), residual - inherited type (Sanjiang basin), residual - reformed (Jixi, Boli, Hegang basin). there are two developed depression and the mechanism of rifting. 6. Sanjiang Basin Suibin Depression, Tangyuan depression, Jixi Cretaceous Tangyuan and Fangzheng rift is the key for further exploration. Yishu graben is a large core of Sanjiang region to find oil, and Paleogene basin is the focus of the external layer system exploration.

Central cell-derived peptides regulate early embryo patterning in flowering plants.

PubMed

Costa, Liliana M; Marshall, Eleanor; Tesfaye, Mesfin; Silverstein, Kevin A T; Mori, Masashi; Umetsu, Yoshitaka; Otterbach, Sophie L; Papareddy, Ranjith; Dickinson, Hugh G; Boutiller, Kim; VandenBosch, Kathryn A; Ohki, Shinya; Gutierrez-Marcos, José F

2014-04-11

Plant embryogenesis initiates with the establishment of an apical-basal axis; however, the molecular mechanisms accompanying this early event remain unclear. Here, we show that a small cysteine-rich peptide family is required for formation of the zygotic basal cell lineage and proembryo patterning in Arabidopsis. EMBRYO SURROUNDING FACTOR 1 (ESF1) peptides accumulate before fertilization in central cell gametes and thereafter in embryo-surrounding endosperm cells. Biochemical and structural analyses revealed cleavage of ESF1 propeptides to form biologically active mature peptides. Further, these peptides act in a non-cell-autonomous manner and synergistically with the receptor-like kinase SHORT SUSPENSOR to promote suspensor elongation through the YODA mitogen-activated protein kinase pathway. Our findings demonstrate that the second female gamete and its sexually derived endosperm regulate early embryonic patterning in flowering plants.

Post-early cretaceous landform evolution along the western margin of the banca~nnia trough, western nsw

USGS Publications Warehouse

Gibson, D.L.

2000-01-01

Previously undated post-Devonian sediments outcropping north of Fowlers Gap station near the western margin of the Bancannia Trough are shown by plant macro- and microfossil determinations to be of Early Cretaceous (most likely Neocomian and/or Aptian) age, and thus part of the Eromanga Basin. They are assigned to the previously defined Telephone Creek Formation. Study of the structural configuration of this unit and the unconformably underlying Devonian rocks suggests that the gross landscape architecture of the area results from post-Early Cretaceous monoclinal folding along blind faults at the western margin of the trough, combined with the effects of differential erosion. This study shows that, while landscape evolution in the area has been dynamic, the major changes that have occurred are on a geological rather than human timescale.

IGF-1 Signaling Plays an Important Role in the Formation of Three-Dimensional Laminated Neural Retina and Other Ocular Structures From Human Embryonic Stem Cells.

PubMed

Mellough, Carla B; Collin, Joseph; Khazim, Mahmoud; White, Kathryn; Sernagor, Evelyne; Steel, David H W; Lako, Majlinda

2015-08-01

We and others have previously demonstrated that retinal cells can be derived from human embryonic stem cells (hESCs) and induced pluripotent stem cells under defined culture conditions. While both cell types can give rise to retinal derivatives in the absence of inductive cues, this requires extended culture periods and gives lower overall yield. Further understanding of this innate differentiation ability, the identification of key factors that drive the differentiation process, and the development of clinically compatible culture conditions to reproducibly generate functional neural retina is an important goal for clinical cell based therapies. We now report that insulin-like growth factor 1 (IGF-1) can orchestrate the formation of three-dimensional ocular-like structures from hESCs which, in addition to retinal pigmented epithelium and neural retina, also contain primitive lens and corneal-like structures. Inhibition of IGF-1 receptor signaling significantly reduces the formation of optic vesicle and optic cups, while exogenous IGF-1 treatment enhances the formation of correctly laminated retinal tissue composed of multiple retinal phenotypes that is reminiscent of the developing vertebrate retina. Most importantly, hESC-derived photoreceptors exhibit advanced maturation features such as the presence of primitive rod- and cone-like photoreceptor inner and outer segments and phototransduction-related functional responses as early as 6.5 weeks of differentiation, making these derivatives promising candidates for cell replacement studies and in vitro disease modeling. © 2015 AlphaMed Press.

Increased Zinc Availability Enhances Initial Aggregation and Biofilm Formation of Streptococcus pneumoniae

PubMed Central

Brown, Lindsey R.; Caulkins, Rachel C.; Schartel, Tyler E.; Rosch, Jason W.; Honsa, Erin S.; Schultz-Cherry, Stacey; Meliopoulos, Victoria A.; Cherry, Sean; Thornton, Justin A.

2017-01-01

Bacteria growing within biofilms are protected from antibiotics and the immune system. Within these structures, horizontal transfer of genes encoding virulence factors, and promoting antibiotic resistance occurs, making biofilms an extremely important aspect of pneumococcal colonization and persistence. Identifying environmental cues that contribute to the formation of biofilms is critical to understanding pneumococcal colonization and infection. Iron has been shown to be essential for the formation of pneumococcal biofilms; however, the role of other physiologically important metals such as copper, zinc, and manganese has been largely neglected. In this study, we investigated the effect of metals on pneumococcal aggregation and early biofilm formation. Our results show that biofilms increase as zinc concentrations increase. The effect was found to be zinc-specific, as altering copper and manganese concentrations did not affect biofilm formation. Scanning electron microscopy analysis revealed structural differences between biofilms grown in varying concentrations of zinc. Analysis of biofilm formation in a mutant strain lacking the peroxide-generating enzyme pyruvate oxidase, SpxB, revealed that zinc does not protect against pneumococcal H2O2. Further, analysis of a mutant strain lacking the major autolysin, LytA, indicated the role of zinc as a negative regulator of LytA-dependent autolysis, which could affect biofilm formation. Additionally, analysis of cell-cell aggregation via plating and microscopy revealed that high concentrations of zinc contribute to intercellular interaction of pneumococci. The findings from this study demonstrate that metal availability contributes to the ability of pneumococci to form aggregates and subsequently, biofilms. PMID:28638805

Requirements for Hirano Body Formation

PubMed Central

Griffin, Paul; Piggott, Cleveland; Maselli, Andrew; Fechheimer, Marcus

2014-01-01

Hirano bodies are paracrystalline F-actin-rich structures associated with diverse conditions, including neurodegeneration and aging. Generation of model Hirano bodies using altered forms of Dictyostelium 34-kDa actin-bundling protein allows studies of their physiological function and mechanism of formation. We describe a novel 34-kDa protein mutant, E60K, with a point mutation within the inhibitory domain of the 34-kDa protein. Expression of E60K in Dictyostelium induces the formation of model Hirano bodies. The E60K protein has activated actin binding and is calcium regulated, unlike other forms of the 34-kDa protein that induce Hirano bodies and that have activated actin binding but lack calcium regulation. Actin filaments in the presence of E60K in vitro show enhanced resistance to disassembly induced by latrunculin B. Actin filaments in model Hirano bodies are also protected from latrunculin-induced depolymerization. We used nocodazole and blebbistatin to probe the role of the microtubules and myosin II, respectively, in the formation of model Hirano bodies. In the presence of these inhibitors, model Hirano bodies can form but are smaller than controls at early times of formation. The ultrastructure of model Hirano bodies did not reveal any major difference in structure and organization in the presence of inhibitors. In summary, these results support the conclusion that formation of model Hirano bodies is promoted by gain-of-function actin filament bundling, which enhances actin filament stabilization. Microtubules and myosin II contribute to but are not required for formation of model Hirano bodies. PMID:24632241

N-terminal Domains Elicit Formation of Functional Pmel17 Amyloid Fibrils*

PubMed Central

Watt, Brenda; van Niel, Guillaume; Fowler, Douglas M.; Hurbain, Ilse; Luk, Kelvin C.; Stayrook, Steven E.; Lemmon, Mark A.; Raposo, Graça; Shorter, James; Kelly, Jeffery W.; Marks, Michael S.

2009-01-01

Pmel17 is a transmembrane protein that mediates the early steps in the formation of melanosomes, the subcellular organelles of melanocytes in which melanin pigments are synthesized and stored. In melanosome precursor organelles, proteolytic fragments of Pmel17 form insoluble, amyloid-like fibrils upon which melanins are deposited during melanosome maturation. The mechanism(s) by which Pmel17 becomes competent to form amyloid are not fully understood. To better understand how amyloid formation is regulated, we have defined the domains within Pmel17 that promote fibril formation in vitro. Using purified recombinant fragments of Pmel17, we show that two regions, an N-terminal domain of unknown structure and a downstream domain with homology to a polycystic kidney disease-1 repeat, efficiently form amyloid in vitro. Analyses of fibrils formed in melanocytes confirm that the polycystic kidney disease-1 domain forms at least part of the physiological amyloid core. Interestingly, this same domain is also required for the intracellular trafficking of Pmel17 to multivesicular compartments within which fibrils begin to form. Although a domain of imperfect repeats (RPT) is required for fibril formation in vivo and is a component of fibrils in melanosomes, RPT is not necessary for fibril formation in vitro and in isolation is unable to adopt an amyloid fold in a physiologically relevant time frame. These data define the structural core of Pmel17 amyloid, imply that the RPT domain plays a regulatory role in timing amyloid conversion, and suggest that fibril formation might be physically linked with multivesicular body sorting. PMID:19840945

[Dens invaginatus. Review of the literature and diagnostic and therapeutic guidelines].

PubMed

Baumgart, Manuela; Hänni, Stefan; Suter, Beat; Schaffner, Markus; Lussi, Adrian

2009-01-01

Dens invaginatus is a clinically relevant malformation of teeth resulting from an infolding of enamel and dentine into the dental structure during tooth formation, hence the former denomination "dens in dente". The dens invaginatus shows multiple morphological variations of crown and root formation. This frequently leads to caries, pulpal and periodontal involvement with necrosis and loss of attachment. Therefore, early diagnosis and prevention are of utmost importance. Due to the complexity of the malformation, treatment options in former days were limited. This article presents a profound review of the literature regarding etiology, epidemiology and histology. It discusses clinical appearance and diagnosis and it provides guidelines for decision-making and treatment of invaginated teeth.

Calcium Sulfates at Gale Crater and Limitations on Gypsum Stability

NASA Technical Reports Server (NTRS)

Vantiman, D. T.; Martinez, G. M.; Rampe, E. B.; Bristow, T. F.; Blake, D. F.; Yen, A. H.; Ming, D. W.; Rapin, W.; Meslin, P. -Y.; Morookian, J. M.;

New Directions in Giant Planet Formation

NASA Astrophysics Data System (ADS)

Youdin, Andrew

The proposed research will explore the limits of the core accretion mechanism for forming giant planets, both in terms of timescale and orbital distance. This theoretical research will be useful in interpreting the results of ongoing exoplanet searches. The effects of radiogenic heating and aerodynamic accretion of pebbles and boulders will be included in time-dependent models of atmospheric structure and growth. To investigate these issues, we will develop and publicly share a protoplanet atmospheric evolution code as an extension of the MESA stellar evolution code. By focusing on relevant processes in the early stages of giant planet formation, we can refine model predictions for exoplanet searches at a wide range of stellar ages and distances from the host star.

Experimental study of subcritical laboratory magnetized collisionless shocks using a laser-driven magnetic piston

NASA Astrophysics Data System (ADS)

Schaeffer, D. B.; Everson, E. T.; Bondarenko, A. S.; Clark, S. E.; Constantin, C. G.; Winske, D.; Gekelman, W.; Niemann, C.

2015-11-01

Recent experiments at the University of California, Los Angeles have successfully generated subcritical magnetized collisionless shocks, allowing new laboratory studies of shock formation relevant to space shocks. The characteristics of these shocks are compared with new data in which no shock or a pre-shock formed. The results are consistent with theory and 2D hybrid simulations and indicate that the observed shock or shock-like structures can be organized into distinct regimes by coupling strength. With additional experiments on the early time parameters of the laser plasma utilizing Thomson scattering, spectroscopy, and fast-gate filtered imaging, these regimes are found to be in good agreement with theoretical shock formation criteria.

Bacterial surface adaptation

NASA Astrophysics Data System (ADS)

Utada, Andrew

2014-03-01

Biofilms are structured multi-cellular communities that are fundamental to the biology and ecology of bacteria. Parasitic bacterial biofilms can cause lethal infections and biofouling, but commensal bacterial biofilms, such as those found in the gut, can break down otherwise indigestible plant polysaccharides and allow us to enjoy vegetables. The first step in biofilm formation, adaptation to life on a surface, requires a working knowledge of low Reynolds number fluid physics, and the coordination of biochemical signaling, polysaccharide production, and molecular motility motors. These crucial early stages of biofilm formation are at present poorly understood. By adapting methods from soft matter physics, we dissect bacterial social behavior at the single cell level for several prototypical bacterial species, including Pseudomonas aeruginosa and Vibrio cholerae.

Narrative Processing in Typically Developing Children and Children with Early Unilateral Brain Injury: Seeing Gesture Matters

PubMed Central

Demir, Özlem Ece; Fisher, Joan A.; Goldin-Meadow, Susan; Levine, Susan C.

2014-01-01

Narrative skill in kindergarteners has been shown to be a reliable predictor of later reading comprehension and school achievement. However, we know little about how to scaffold children’s narrative skill. Here we examine whether the quality of kindergarten children’s narrative retellings depends on the kind of narrative elicitation they are given. We asked this question in typically developing (TD) kindergarten children and in children with pre- or perinatal unilateral brain injury (PL), a group that has been shown to have difficulty with narrative production. We compared children’s skill in story retellings under four different elicitation formats: (1) wordless cartoons, (2) stories told by a narrator through the auditory modality, (3) stories told by a narrator through the audiovisual modality without co-speech gestures, and (4) stories told by a narrator in the audiovisual modality with co-speech gestures. We found that children told better structured narratives in the fourth, audiovisual + gesture elicitation format than in the other three elicitation formats, consistent with findings that co-speech gestures can scaffold other aspects of language and memory. The audiovisual + gesture elicitation format was particularly beneficial to children who had the most difficulty telling a well-structured narrative, a group that included children with larger lesions associated with cerebrovascular infarcts. PMID:24127729

Stratigraphy and structure of the Sevier thrust belt and proximal foreland-basin system in central Utah: A transect from the Sevier Desert to the Wasatch Plateau

USGS Publications Warehouse

Lawton, T.F.; Sprinkel, D.A.; Decelles, P.G.; Mitra, G.; Sussman, A.J.; Weiss, M.P.

1997-01-01

The Sevier orogenic belt in central Utah comprises four north-northwest trending thrust plates and two structural culminations that record crustal shortening and uplift in late Mesozoic and early Tertiary time. Synorogenic clastic rocks, mostly conglomerate and sandstone, exposed within the thrust belt were deposited in wedge-top and foredeep depozones within the proximal part of the foreland-basin system. The geologic relations preserved between thrust structures and synorogenic deposits demonstrate a foreland-breaking sequence of thrust deformation that was modified by minor out-of-sequence thrust displacement. Structural culminations in the interior part of the thrust belt deformed and uplifted some of the thrust sheets following their emplacement. Strata in the foreland basin indicate that the thrust sheets of central Utah were emplaced between latest Jurassic and Eocene time. The oldest strata of the foredeep depozone (Cedar Mountain Formation) are Neocomian and were derived from the hanging wall of the Canyon Range thrust. The foredeep depozone subsided most rapidly during Albian through Santonian or early Campanian time and accumulated about 2.5 km of conglomeratic strata (Indianola Group). The overlying North Horn Formation accumulated in a wedge-top basin from the Campanian to the Eocene and records propagation of the Gunnison thrust beneath the former foredeep. The Canyon Range Conglomerate of the Canyon Mountains, equivalent to the Indianola Group and the North Horn Formation, was deposited exclusively in a wedge-top setting on the Canyon Range and Pavant thrust sheets. This field trip, a three day, west-to-east traverse of the Sevier orogenic belt in central Utah, visits localities where timing of thrust structures is demonstrated by geometry of cross-cutting relations, growth strata associated with faults and folds, or deformation of foredeep deposits. Stops in the Canyon Mountains emphasize geometry of late structural culminations and relationships of the Canyon Range thrust to growth strata deposited in the wedge-top depozone. Stops in the San Pitch Mountains illustrate deposits of the foredeep depozone and younger, superjacent wedge-top depozone. Stops in the Sanpete Valley and western part of the Wasatch Plateau examine the evolution of the foreland-basin system from foredeep to wedge-top during growth of a triangle zone near the front of the Gunnison thrust.

The year-class phenomenon and the storage effect in marine fishes

NASA Astrophysics Data System (ADS)

Secor, David H.

2007-02-01

Factors contributing to population growth through strong year-class formation have driven a century of directed research in fisheries science. A central discovery of Hjort's paradigm was that multiple generations overlap and longevity is matched with frequency of strong recruitments. Here, I elaborate on this tenet by examining how intra-population modalities in spawning and early habitat use favour population resiliency. A modern theory that has application is the storage effect [Warner, R.R., Chesson, P.L., 1985. Coexistence mediated by recruitment fluctuations - a field guide to the storage effect. Am. Nat. 125, 769-787], whereby spawning stock biomass accumulates each year so that when early survival conditions are favourable, stored egg production can result in explosive population growth. I review two early life history behaviours that contribute to the storage effect: split cohorts (i.e., seasonal pulses of eggs and larvae) and contingent behaviour (i.e., dispersive and retentive patterns in early dispersal). Episodic and pulsed production of larvae is a common feature for marine fishes, well documented through otolith microstructure and hatch-date analyses. In temperate and boreal fishes, early and late spawned cohorts of larvae and juveniles may have differing fates dependent upon seasonal and inter-annual fluctuations in weather and climate. Often, a coastal fish may spawn for a protracted period, yet only a few days' egg production will result in successful recruitment. In these and other instances, it is clear that diversity in spawning behaviour can confer resilience against temporal variations in early survival conditions. Although many factors contribute to intra-population spawning modalities, size and age structure of adults play an important role. Contingent structure, an idea dating to Hjort (herring contingents) and Gilbert (salmon contingents), has been resurrected to describe the diversity of intra-population modalities observed through otolith microchemical and electronic tagging approaches. Retentive and dispersive behaviours confer resiliency against early survival conditions that vary spatially. Examples of contingent structure are increasingly numerous for diadromous fishes. Here, a nursery habitat associated with a contingent behaviour may make a small contribution in a given year, but over a decade contribute significantly to spawning stock biomass. For flatfish and other marine fishes, contingent structure is probable but not well documented. Proximate factors leading to contingent structure are poorly known, but for diadromous fishes, time of spawning and early life history energetic thresholds is hypothesized to lead to alternative life cycles. Here again time of spawning may lead to the storage effect by hedging against spatial variance in early vital rates. Managing for the storage effect will be promoted by conservation of adult age structure and early habitats upon which both strong and weak year-classes rely.

Growth of matter perturbation in quintessence cosmology

NASA Astrophysics Data System (ADS)

Mulki, Fargiza A. M.; Wulandari, Hesti R. T.

2017-01-01

Big bang theory states that universe emerged from singularity with very high temperature and density, then expands homogeneously and isotropically. This theory gives rise standard cosmological principle which declares that universe is homogeneous and isotropic on large scales. However, universe is not perfectly homogeneous and isotropic on small scales. There exist structures starting from clusters, galaxies even to stars and planetary system scales. Cosmological perturbation theory is a fundamental theory that explains the origin of structures. According to this theory, the structures can be regarded as small perturbations in the early universe, which evolves as the universe expands. In addition to the problem of inhomogeneities of the universe, observations of supernovae Ia suggest that our universe is being accelerated. Various models of dark energy have been proposed to explain cosmic acceleration, one of them is cosmological constant. Because of several problems arise from cosmological constant, the alternative models have been proposed, one of these models is quintessence. We reconstruct growth of structure model following quintessence scenario at several epochs of the universe, which is specified by the effective equation of state parameters for each stage. Discussion begins with the dynamics of quintessence, in which exponential potential is analytically derived, which leads to various conditions of the universe. We then focus on scaling and quintessence dominated solutions. Subsequently, we review the basics of cosmological perturbation theory and derive formulas to investigate how matter perturbation evolves with time in subhorizon scales which leads to structure formation, and also analyze the influence of quintessence to the structure formation. From analytical exploration, we obtain the growth rate of matter perturbation and the existence of quintessence as a dark energy that slows down the growth of structure formation of the universe.

Geologic Mapping of Vesta

NASA Technical Reports Server (NTRS)

Yingst, R. A.; Mest, S. C.; Berman, D. C.; Garry, W. B.; Williams, D. A.; Buczkowski, D.; Jaumann, R.; Pieters, C. M.; De Sanctis, M. C.; Frigeri, A.;

Early formation of planetary building blocks inferred from Pb isotopic ages of chondrules

PubMed Central

Bollard, Jean; Connelly, James N.; Whitehouse, Martin J.; Pringle, Emily A.; Bonal, Lydie; Jørgensen, Jes K.; Nordlund, Åke; Moynier, Frédéric; Bizzarro, Martin

2017-01-01

The most abundant components of primitive meteorites (chondrites) are millimeter-sized glassy spherical chondrules formed by transient melting events in the solar protoplanetary disk. Using Pb-Pb dates of 22 individual chondrules, we show that primary production of chondrules in the early solar system was restricted to the first million years after the formation of the Sun and that these existing chondrules were recycled for the remaining lifetime of the protoplanetary disk. This finding is consistent with a primary chondrule formation episode during the early high-mass accretion phase of the protoplanetary disk that transitions into a longer period of chondrule reworking. An abundance of chondrules at early times provides the precursor material required to drive the efficient and rapid formation of planetary objects via chondrule accretion. PMID:28808680

Multiphase Structural Evolution of a Continental Margin During Obduction Orogeny: Insights From the Jebel Akhdar Dome, Oman Mountains

NASA Astrophysics Data System (ADS)

Grobe, A.; Virgo, S.; von Hagke, C.; Urai, J. L.; Littke, R.

2018-03-01

The structural evolution of the carbonate platform in the footwall of the Semail ophiolite emplaced onto the passive continental margin of Arabia helps to better understand the early stages of obduction-related orogens. These early stages are rarely observable in other orogens as they are mostly overprinted by later mountain building phases. We present an extensive structural analysis of the Jebel Akhdar anticline, the largest tectonic window of the Oman Mountains, and integrate it on different scales. Outcrop observations can be linked to plate motion data, providing an absolute timeframe for structural generations consistent with radiometric dating of veins. Top-to-S overthrusting of the Semail ophiolite and Hawasina nappes onto the carbonate platform during high plate convergence rates between Arabia and Eurasia caused rapid burial and overpressure, generation and migration of hydrocarbons, and bedding-confined veins, but no major deformation in the carbonate platform. At reduced convergence rates, subsequent tectonic thinning of the ophiolite took place above a top-to-NNE, crustal-scale ductile shear zone, deforming existing veins and forming a cleavage in clay-rich layers in early Campanian times. Ongoing extension occurred along normal- to oblique-slip faults, forming horst-graben structures and a precursor of the Jebel Akhdar dome (Campanian to Maastrichtian). This was followed by NE-SW oriented ductile shortening and the formation of the Jebel Akhdar dome, deforming the earlier structures. Thereafter, exhumation was associated with low-angle normal faults on the northern flank of the anticline. We correlate the top-to-NNE crustal-scale shear zone with a similar structure in the Saih Hatat window to develop a unified model of the tectonic evolution of the Oman Mountains.

Changing Nuclear Landscape and Unique PML Structures During Early Epigenetic Transitions of Human Embryonic Stem Cells

PubMed Central

Butler, John T.; Hall, Lisa L.; Smith, Kelly P.; Lawrence, Jeanne B.

2010-01-01

The complex nuclear structure of somatic cells is important to epigenomic regulation, yet little is known about nuclear organization of human embryonic stem cells (hESC). Here we surveyed several nuclear structures in pluripotent and transitioning hESC. Observations of centromeres, telomeres, SC35 speckles, Cajal Bodies, lamin A/C and emerin, nuclear shape and size demonstrate a very different “nuclear landscape” in hESC. This landscape is remodeled during a brief transitional window, concomitant with or just prior to differentiation onset. Notably, hESC initially contain abundant signal for spliceosome assembly factor, SC35, but lack discrete SC35 domains; these form as cells begin to specialize, likely reflecting cell-type specific genomic organization. Concomitantly, nuclear size increases and shape changes as lamin A/C and emerin incorporate into the lamina. During this brief window, hESC exhibit dramatically different PML-defined structures, which in somatic cells are linked to gene regulation and cancer. Unlike the numerous, spherical somatic PML bodies, hES cells often display ~1–3 large PML structures of two morphological types: long linear “rods” or elaborate “rosettes”, which lack substantial SUMO-1, Daxx, and Sp100.These occur primarily between Day 0–2 of differentiation and become rare thereafter. PML rods may be “taut” between other structures, such as centromeres, but clearly show some relationship with the lamina, where PML often abuts or fills a “gap” in early lamin A/C staining. Findings demonstrate that pluripotent hES cells have a markedly different overall nuclear architecture, remodeling of which is linked to early epigenomic programming and involves formation of unique PML-defined structures. PMID:19449340

ATLASGAL: Chemical evolution of star forming clumps

NASA Astrophysics Data System (ADS)

Figura, Charles C.; Urquhart, James S.; Wyrowski, Friedrich

2017-01-01

Although massive stars are few in number, they impact their host molecular clouds, clusters, and galaxies in profound ways, playing a vital role in regulating star formation in their host galaxy. Understanding the formation of these massive stars is critical to understanding this evolution, but their rapid early development causes them to reach the main sequence while still shrouded in their natal molecular cloud. Many studies have investigated these regions in a targeted manner, but a full understanding necessitates a broader view at all stages of formation across many star forming regions.We have used mid-infrared continuum surveys to guide selection of a statistically large sample of massive dust clumps from the 10,000 such clumps identified in the ATLASGAL Compact Source Catalogue (CSC), ensuring that all stages of the evolutionary process are included. A final sample of 600 fourth-quadrant sources within 1 degree of the Galactic plane were observed with the Mopra telescope with an 8 GHz bandwidth between 85.2 and 93.4 GHz.We present an overview of our results. We have identified over 30 molecular lines, seven of which with detected hyperfine structure, as well as several mm-radio recombination line transitions. Source velocities indicate that these regions trace the Crux-Scutum, Norma, and Carina Sagitarius arms. We have performed an analysis of linewidth and line intensity ratios, correlating these with star formation stages as identified by IR brightness at the 70 and 24 μm bands, and present several molecular pairs whose linewidth and intensity might serve as significant tracers of the evolutionary stage of star formation. We comment on the results of PCA analysis of the measured parameters for the overall population and the star formation stage subgroups with an eye toward characterising early stellar development through molecular line observations.

The dual-basin landscape in GFP folding

PubMed Central

Andrews, Benjamin T.; Gosavi, Shachi; Finke, John M.; Onuchic, José N.; Jennings, Patricia A.

2008-01-01

Recent experimental studies suggest that the mature GFP has an unconventional landscape composed of an early folding event with a typical funneled landscape, followed by a very slow search and rearrangement step into the locked, active chromophore-containing structure. As we have shown previously, the substantial difference in time scales is what generates the observed hysteresis in thermodynamic folding. The interconversion between locked and the soft folding structures at intermediate denaturant concentrations is so slow that it is not observed under the typical experimental observation time. Simulations of a coarse-grained model were used to describe the fast folding event as well as identify native-like intermediates on energy landscapes enroute to the fluorescent native fold. Interestingly, these simulations reveal structural features of the slow dynamic transition to chromophore activation. Experimental evidence presented here shows that the trapped, native-like intermediate has structural heterogeneity in residues previously linked to chromophore formation. We propose that the final step of GFP folding is a “locking” mechanism leading to chromophore formation and high stability. The combination of previous experimental work and current simulation work is explained in the context of a dual-basin folding mechanism described above. PMID:18713871

Holocene freshwater carbonate structures in the hyper-arid Gebel Uweinat region of the Sahara Desert (Southwestern Egypt)

NASA Astrophysics Data System (ADS)

Marinova, Margarita M.; Meckler, A. Nele; McKay, Christopher P.

2014-01-01

The eastern part of the Sahara is at present the driest region of the desert. Yet the extensive animal rock art in the area, presumed to depict real activities in the lives of the painters, suggests that environmental conditions were significantly different when the rock art was produced. Here we report on exploration of the area, which led to the discovery of morphologically-distinct carbonate structures that line the walls of two valleys in Gebel Uweinat, and were likely formed in standing water. The carbonate structures comprise what appear to be shoreline carbonate formations, and date back to 8100 and 9400 years BP. The chemical and morphological similarity of these formations to carbonate structures from modern lakes suggests that these lakes contained fresh, standing water suitable for human and animal use. However, the significant quartz content suggests that windblown sand was pervasive, and thus the vegetation cover may have been sparse. This discovery supports the possibility of grasslands in the area, which may have been able to support human habitation, and adds to the evidence for a wetter climate in the area in the early Holocene.

Galactic chemical evolution in hierarchical formation models

NASA Astrophysics Data System (ADS)

Arrigoni, Matias

2010-10-01

The chemical properties and abundance ratios of galaxies provide important information about their formation histories. Galactic chemical evolution has been modelled in detail within the monolithic collapse scenario. These models have successfully described the abundance distributions in our Galaxy and other spiral discs, as well as the trends of metallicity and abundance ratios observed in early-type galaxies. In the last three decades, however, the paradigm of hierarchical assembly in a Cold Dark Matter (CDM) cosmology has revised the picture of how structure in the Universe forms and evolves. In this scenario, galaxies form when gas radiatively cools and condenses inside dark matter haloes, which themselves follow dissipationless gravitational collapse. The CDM picture has been successful at predicting many observed properties of galaxies (for example, the luminosity and stellar mass function of galaxies, color-magnitude or star formation rate vs. stellar mass distributions, relative numbers of early and late-type galaxies, gas fractions and size distributions of spiral galaxies, and the global star formation history), though many potential problems and open questions remain. It is therefore interesting to see whether chemical evolution models, when implemented within this modern cosmological context, are able to correctly predict the observed chemical properties of galaxies. With the advent of more powerfull telescopes and detectors, precise observations of chemical abundances and abundance ratios in various phases (stellar, ISM, ICM) offer the opportunity to obtain strong constraints on galaxy formation histories and the physics that shapes them. However, in order to take advantage of these observations, it is necessary to implement detailed modeling of chemical evolution into a modern cosmological model of hierarchical assembly.

Stable, Metastable, and Kinetically Trapped Amyloid Aggregate Phases

PubMed Central

2015-01-01

Self-assembly of proteins into amyloid fibrils plays a key role in a multitude of human disorders that range from Alzheimer’s disease to type II diabetes. Compact oligomeric species, observed early during amyloid formation, are reported as the molecular entities responsible for the toxic effects of amyloid self-assembly. However, the relation between early-stage oligomeric aggregates and late-stage rigid fibrils, which are the hallmark structure of amyloid plaques, has remained unclear. We show that these different structures occupy well-defined regions in a peculiar phase diagram. Lysozyme amyloid oligomers and their curvilinear fibrils only form after they cross a salt and protein concentration-dependent threshold. We also determine a boundary for the onset of amyloid oligomer precipitation. The oligomeric aggregates are structurally distinct from rigid fibrils and are metastable against nucleation and growth of rigid fibrils. These experimentally determined boundaries match well with colloidal model predictions that account for salt-modulated charge repulsion. The model also incorporates the metastable and kinetic character of oligomer phases. Similarities and differences of amyloid oligomer assembly to metastable liquid–liquid phase separation of proteins and to surfactant aggregation are discussed. PMID:25469942

Stable, metastable, and kinetically trapped amyloid aggregate phases.

PubMed

Miti, Tatiana; Mulaj, Mentor; Schmit, Jeremy D; Muschol, Martin

2015-01-12

Self-assembly of proteins into amyloid fibrils plays a key role in a multitude of human disorders that range from Alzheimer's disease to type II diabetes. Compact oligomeric species, observed early during amyloid formation, are reported as the molecular entities responsible for the toxic effects of amyloid self-assembly. However, the relation between early-stage oligomeric aggregates and late-stage rigid fibrils, which are the hallmark structure of amyloid plaques, has remained unclear. We show that these different structures occupy well-defined regions in a peculiar phase diagram. Lysozyme amyloid oligomers and their curvilinear fibrils only form after they cross a salt and protein concentration-dependent threshold. We also determine a boundary for the onset of amyloid oligomer precipitation. The oligomeric aggregates are structurally distinct from rigid fibrils and are metastable against nucleation and growth of rigid fibrils. These experimentally determined boundaries match well with colloidal model predictions that account for salt-modulated charge repulsion. The model also incorporates the metastable and kinetic character of oligomer phases. Similarities and differences of amyloid oligomer assembly to metastable liquid-liquid phase separation of proteins and to surfactant aggregation are discussed.

The Evolution of Globular Cluster Systems In Early-Type Galaxies

NASA Astrophysics Data System (ADS)

Grillmair, Carl

1999-07-01

We will measure structural parameters {core radii and concentrations} of globular clusters in three early-type galaxies using deep, four-point dithered observations. We have chosen globular cluster systems which have young, medium-age and old cluster populations, as indicated by cluster colors and luminosities. Our primary goal is to test the hypothesis that globular cluster luminosity functions evolve towards a ``universal'' form. Previous observations have shown that young cluster systems have exponential luminosity functions rather than the characteristic log-normal luminosity function of old cluster systems. We will test to see whether such young system exhibits a wider range of structural parameters than an old systems, and whether and at what rate plausible disruption mechanisms will cause the luminosity function to evolve towards a log-normal form. A simple observational comparison of structural parameters between different age cluster populations and between diff er ent sub-populations within the same galaxy will also provide clues concerning both the formation and destruction mechanisms of star clusters, the distinction between open and globular clusters, and the advisability of using globular cluster luminosity functions as distance indicators.

Intermediates and the folding of proteins L and G

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, Scott; Head-Gordon, Teresa

We use a minimalist protein model, in combination with a sequence design strategy, to determine differences in primary structure for proteins L and G that are responsible for the two proteins folding through distinctly different folding mechanisms. We find that the folding of proteins L and G are consistent with a nucleation-condensation mechanism, each of which is described as helix-assisted {beta}-1 and {beta}-2 hairpin formation, respectively. We determine that the model for protein G exhibits an early intermediate that precedes the rate-limiting barrier of folding and which draws together misaligned secondary structure elements that are stabilized by hydrophobic core contactsmore » involving the third {beta}-strand, and presages the later transition state in which the correct strand alignment of these same secondary structure elements is restored. Finally the validity of the targeted intermediate ensemble for protein G was analyzed by fitting the kinetic data to a two-step first order reversible reaction, proving that protein G folding involves an on-pathway early intermediate, and should be populated and therefore observable by experiment.« less

Intermediates and the folding of proteins L and G

PubMed Central

Brown, Scott; Head-Gordon, Teresa

2004-01-01

We use a minimalist protein model, in combination with a sequence design strategy, to determine differences in primary structure for proteins L and G, which are responsible for the two proteins folding through distinctly different folding mechanisms. We find that the folding of proteins L and G are consistent with a nucleation-condensation mechanism, each of which is described as helix-assisted β-1 and β-2 hairpin formation, respectively. We determine that the model for protein G exhibits an early intermediate that precedes the rate-limiting barrier of folding, and which draws together misaligned secondary structure elements that are stabilized by hydrophobic core contacts involving the third β-strand, and presages the later transition state in which the correct strand alignment of these same secondary structure elements is restored. Finally, the validity of the targeted intermediate ensemble for protein G was analyzed by fitting the kinetic data to a two-step first-order reversible reaction, proving that protein G folding involves an on-pathway early intermediate, and should be populated and therefore observable by experiment. PMID:15044729

Structural plays in Ellesmerian sequence and correlative strata of the National Petroleum Reserve, Alaska

USGS Publications Warehouse

Moore, Thomas E.; Potter, Christopher J.

2003-01-01

Reservoirs in deformed rocks of the Ellesmerian sequence in southern NPRA are assigned to two hydrocarbon plays, the Thrust-Belt play and the Ellesmerian Structural play. The two plays differ in that the Thrust-Belt play consists of reservoirs located in allochthonous strata in the frontal part of the Brooks Range fold-and-thrust belt, whereas those of the Ellesmerian Structural play are located in autochthonous or parautochthonous strata at deeper structural levels north of the Thrust-Belt play. Together, these structural plays are expected to contain about 3.5 TCF of gas but less than 6 million barrels of oil. These two plays are analyzed using a two-stage deformational model. The first stage of deformation occurred during the Neocomian, when distal strata of the Ellesmerian sequence were imbricated and assembled into deformational wedges emplaced northward onto regionally south-dipping authochon at 140-120 Ma. In the mid-Cretaceous following cessation of the deformation, the Colville basin, the foreland basin to the orogen, was filled with a thick clastic succession. During the second stage of deformation at about 60 Ma (early Tertiary), the combined older orogenic belt-foreland basin system was involved in another episode of north-vergent contractional deformation that deformed pre-existing stratigraphic and structurally trapped reservoir units, formed new structural traps, and caused significant amounts of uplift, although the amount of shortening was relatively small in comparison to the first episode of deformation. Hydrocarbon generation from source strata (Shublik Formation, Kingak Shale, and Otuk Formation) and migration into stratigraphic traps occurred primarily by sedimentary burial principally between 100-90 Ma, between the times of the two episodes of deformation. Subsequent burial caused deep stratigraphic traps to become overmature, cracking oil to gas, and some new generation to begin progressively higher in the section. Structural disruption of the traps in the Early Tertiary is hypothesized to have released sequestered hydrocarbons and caused remigration into newly formed structural traps formed at higher structural levels. Because of the generally high maturation of the Colville basin at the time of the deformation and remigration, most of the hydrocarbons available to fill traps were gas. In the the Thrust-Belt play, the primary reservoir lithology is expected to be dolomitic carbonate rocks of the Lisburne Group, which contain up to 15% porosity. Antiformal stacks of imbricated Lisburne Group strata form the primary trapping configuration, with chert and shale of the overlying Etivluk Group forming seals on closures. Traps are expected to have been charged primarily with remigrated gas, but oil generated from local sources in the Otuk Formation may have filled some traps at high structural levels. The timing for migration of gas into traps is excellent, but only moderate for oil because peak oil generation for the play as a whole occurred 30 to 40 m.y. before trap formation. Reservoir and seal quality in the play are questionable, reducing the likelyhood of hydrocarbon accumulations being present in the play. Our analysis suggests that the play will hold 5.7 million barrels of technically recoverable oil and 1.5 TCF gas (mean values). In the Ellesmerian Stuctural play, the primary reservoir lithologies will be dolomitic carbonate rocks of the Lisburne Group and, less likely, clastic units in the Ellesmerian sequence. Traps in the play are anticlinal closures caused by small amounts of strain in the footwall below the basal detachment for most early Tertiary thrusting. Because these traps lie beneath the main source rock units (Shublik, Kingak, lower Brookian sequence), reservoirs that are juxtaposed by faulting against source-rock units are expected to have the most favorable migration pathways. The charge will be primarily remigrated gas; no oil is expected because of the great depths (15,000 to 26,000 ft) and consequent high thermal maturity of this play. Although the the probability of charge and timeliness of trap formation and gas remigration are excellent, seal and reservoir qualities are anticipated to be poor. Our analysis suggests that about 2.0 TCF of techncially recoverable gas can be expected in the play.

Adolescent Violent Victimization and Precocious Union Formation.

PubMed

C Kuhl, Danielle; Warner, David F; Wilczak, Andrew

2012-11-01

This article bridges scholarship in criminology and family sociology by extending arguments about "precocious exits" from adolescence to consider early union formation as a salient outcome of violent victimization for youths. Research indicates that early union formation is associated with several negative outcomes; yet the absence of attention to union formation as a consequence of violent victimization is noteworthy. We address this gap by drawing on life course theory and data from the National Longitudinal Study of Adolescent Health (Add Health) to examine the effect of violent victimization ("street" violence) on the timing of first co-residential union formation-differentiating between marriage and cohabitation-in young adulthood. Estimates from Cox proportional hazard models show that adolescent victims of street violence experience higher rates of first union formation, especially marriage, early in the transition to adulthood; however, this effect declines with age, as such unions become more normative. Importantly, the effect of violent victimization on first union timing is robust to controls for nonviolent delinquency, substance abuse, and violent perpetration. We conclude by discussing directions for future research on the association between violent victimization and coresidential unions with an eye toward the implications of such early union formation for desistance.

Electron avalanche structure determined by random walk theory

NASA Technical Reports Server (NTRS)

Englert, G. W.

1973-01-01

A self-consistent avalanche solution which accounts for collective long range Coulomb interactions as well as short range elastic and inelastic collisions between electrons and background atoms is made possible by a random walk technique. Results show that the electric field patterns in the early formation stages of avalanches in helium are close to those obtained from theory based on constant transport coefficients. Regions of maximum and minimum induced electrostatic potential phi are located on the axis of symmetry and within the volume covered by the electron swarm. As formation time continues, however, the region of minimum phi moves to slightly higher radii and the electric field between the extrema becomes somewhat erratic. In the intermediate formation periods the avalanche growth is slightly retarded by the high concentration of ions in the tail which oppose the external electric field. Eventually the formation of ions and electrons in the localized regions of high field strength more than offset this effect causing a very abrupt increase in avalanche growth.

Monitoring sinew contraction during formation of tissue-engineered fibrin-based ligament constructs.

PubMed

Paxton, Jennifer Z; Wudebwe, Uchena N G; Wang, Anqi; Woods, Daniel; Grover, Liam M

2012-08-01

The ability to study the gross morphological changes occurring during tissue formation is vital to producing tissue-engineered structures of clinically relevant dimensions in vitro. Here, we have used nondestructive methods of digital imaging and optical coherence tomography to monitor the early-stage formation and subsequent maturation of fibrin-based tissue-engineered ligament constructs. In addition, the effect of supplementation with essential promoters of collagen synthesis, ascorbic acid (AA) and proline (P), has been assessed. Contraction of the cell-seeded fibrin gel occurs unevenly within the first 5 days of culture around two fixed anchor points before forming a longitudinal ligament-like construct. AA+P supplementation accelerates gel contraction in the maturation phase of development, producing ligament-like constructs with a higher collagen content and distinct morphology to that of unsupplemented constructs. These studies highlight the importance of being able to control the methods of tissue formation and maturation in vitro to enable the production of tissue-engineered constructs with suitable replacement tissue characteristics for repair of clinical soft-tissue injuries.

Cosmic evolution of star formation properties of galaxies

NASA Astrophysics Data System (ADS)

Kim, Sungeun

2014-01-01

Development of bolometer array and camera at submillimeter wavelength has played an important role in detecting submillimeter bright galaxies, so called submillimeter galaxies. These galaxies seem to be progenitors of present-day massive galaxies and account for their considerable contributions to the light from the early universe and their expected high star formation rates if there is a close link between the submillimeter galaxies and the star formation activities, and the interstellar dust in galaxies is mainly heated by the star light. We review assembly of submillimeter galaxies chosen from the AzTEC and the Herschel SPIRE/PACS data archives, and investigate their spectral energy distribution fits including the data at other wavelengths to deduce details about stellar parameters including star formation rates and parameters yielding the metallicity, composition and abundance in dust, and disc structure of these galaxies. This work has been supported in part by Mid-career Researcher Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology 2011-0028001.

Structure and Evolution of the Lunar Interior

NASA Technical Reports Server (NTRS)

Andrews-Hanna, J. C.; Weber, R. C.; Ishihara, Y.; Kamata, S.; Keane, J.; Kiefer, W. S.; Matsuyama, I.; Siegler, M.; Warren, P.

2017-01-01

Early in its evolution, the Moon underwent a magma ocean phase leading to its differentiation into a feldspathic crust, cumulate mantle, and iron core. However, far from the simplest view of a uniform plagioclase flotation crust, the present-day crust of the Moon varies greatly in thickness, composition, and physical properties. Recent significant improvements in both data and analysis techniques have yielded fundamental advances in our understanding of the structure and evolution of the lunar interior. The structure of the crust is revealed by gravity, topography, magnetics, seismic, radar, electromagnetic, and VNIR remote sensing data. The mantle structure of the Moon is revealed primarily by seismic and laser ranging data. Together, this data paints a picture of a Moon that is heterogeneous in all directions and across all scales, whose structure is a result of its unique formation, differentiation, and subsequent evolution. This brief review highlights a small number of recent advances in our understanding of lunar structure.

Organic chemistry in a CO2 rich early Earth atmosphere

NASA Astrophysics Data System (ADS)

Fleury, Benjamin; Carrasco, Nathalie; Millan, Maëva; Vettier, Ludovic; Szopa, Cyril

2017-12-01

The emergence of life on the Earth has required a prior organic chemistry leading to the formation of prebiotic molecules. The origin and the evolution of the organic matter on the early Earth is not yet firmly understood. Several hypothesis, possibly complementary, are considered. They can be divided in two categories: endogenous and exogenous sources. In this work we investigate the contribution of a specific endogenous source: the organic chemistry occurring in the ionosphere of the early Earth where the significant VUV contribution of the young Sun involved an efficient formation of reactive species. We address the issue whether this chemistry can lead to the formation of complex organic compounds with CO2 as only source of carbon in an early atmosphere made of N2, CO2 and H2, by mimicking experimentally this type of chemistry using a low pressure plasma reactor. By analyzing the gaseous phase composition, we strictly identified the formation of H2O, NH3, N2O and C2N2. The formation of a solid organic phase is also observed, confirming the possibility to trigger organic chemistry in the upper atmosphere of the early Earth. The identification of Nitrogen-bearing chemical functions in the solid highlights the possibility for an efficient ionospheric chemistry to provide prebiotic material on the early Earth.

Formative Evaluation of the Understanding the Early Years Initiative. Final Report

ERIC Educational Resources Information Center

Human Resources and Skills Development Canada, 2009

2009-01-01

This report presents the findings of the formative evaluation of the Understanding the Early Years (UEY) Initiative. The evaluation was conducted to examine issues of implementation and design, early progress in achieving immediate objectives, and issues related to accountability. The evaluation team was also asked to provide preliminary guidance…

Enhancing Research and Practice in Early Childhood through Formative and Design Experiments

ERIC Educational Resources Information Center

Bradley, Barbara A.; Reinking, David

2011-01-01

This article describes formative and design experiments and how they can advance research and instructional practices in early childhood education. We argue that this relatively new approach to education research closes the gap between research and practice, and it addresses limitations that have been identified in early childhood research. We…

The Great Observatories Origins Deep Survey

NASA Astrophysics Data System (ADS)

Dickinson, Mark

2008-05-01

Observing the formation and evolution of ordinary galaxies at early cosmic times requires data at many wavelengths in order to recognize, separate and analyze the many physical processes which shape galaxies' history, including the growth of large scale structure, gravitational interactions, star formation, and active nuclei. Extremely deep data, covering an adequately large volume, are needed to detect ordinary galaxies in sufficient numbers at such great distances. The Great Observatories Origins Deep Survey (GOODS) was designed for this purpose as an anthology of deep field observing programs that span the electromagnetic spectrum. GOODS targets two fields, one in each hemisphere. Some of the deepest and most extensive imaging and spectroscopic surveys have been carried out in the GOODS fields, using nearly every major space- and ground-based observatory. Many of these data have been taken as part of large, public surveys (including several Hubble Treasury, Spitzer Legacy, and ESO Large Programs), which have produced large data sets that are widely used by the astronomical community. I will review the history of the GOODS program, highlighting results on the formation and early growth of galaxies and their active nuclei. I will also describe new and upcoming observations, such as the GOODS Herschel Key Program, which will continue to fill out our portrait of galaxies in the young universe.

Subretinal Pigment Epithelial Deposition of Drusen Components Including Hydroxyapatite in a Primary Cell Culture Model

DOE PAGES

Pilgrim, Matthew G.; Lengyel, Imre; Lanzirotti, Antonio; ...

2017-02-01

Extracellular deposits containing hydroxyapatite, lipids, proteins, and trace metals that form between the basal lamina of the RPE and the inner collagenous layer of Bruch’s membrane are hallmarks of early AMD. We examined whether cultured RPE cells could produce extracellular deposits containing all of these molecular components. Retinal pigment epithelium cells isolated from freshly enucleated porcine eyes were cultured on Transwell membranes for up to 6 months. Deposit composition and structure were characterized using light, fluorescence, and electron microscopy; synchrotron x-ray diffraction and x-ray fluorescence; secondary ion mass spectroscopy; and immunohistochemistry. Apparently functional primary RPE cells, when cultured on 10-lm-thickmore » inserts with 0.4-lm-diameter pores, can produce sub-RPE deposits that contain hydroxyapatite, lipids, proteins, and trace elements, without outer segment supplementation, by 12 weeks. In conclusion, the data suggest that sub-RPE deposit formation is initiated, and probably regulated, by the RPE, as well as the loss of permeability of the Bruch’s membrane and choriocapillaris complex associated with age and early AMD. This cell culture model of early AMD lesions provides a novel system for testing new therapeutic interventions against sub-RPE deposit formation, an event occurring well in advance of the onset of vision loss.« less

Subretinal Pigment Epithelial Deposition of Drusen Components Including Hydroxyapatite in a Primary Cell Culture Model.

PubMed

Pilgrim, Matthew G; Lengyel, Imre; Lanzirotti, Antonio; Newville, Matt; Fearn, Sarah; Emri, Eszter; Knowles, Jonathan C; Messinger, Jeffrey D; Read, Russell W; Guidry, Clyde; Curcio, Christine A

2017-02-01

Extracellular deposits containing hydroxyapatite, lipids, proteins, and trace metals that form between the basal lamina of the RPE and the inner collagenous layer of Bruch's membrane are hallmarks of early AMD. We examined whether cultured RPE cells could produce extracellular deposits containing all of these molecular components. Retinal pigment epithelium cells isolated from freshly enucleated porcine eyes were cultured on Transwell membranes for up to 6 months. Deposit composition and structure were characterized using light, fluorescence, and electron microscopy; synchrotron x-ray diffraction and x-ray fluorescence; secondary ion mass spectroscopy; and immunohistochemistry. Apparently functional primary RPE cells, when cultured on 10-μm-thick inserts with 0.4-μm-diameter pores, can produce sub-RPE deposits that contain hydroxyapatite, lipids, proteins, and trace elements, without outer segment supplementation, by 12 weeks. The data suggest that sub-RPE deposit formation is initiated, and probably regulated, by the RPE, as well as the loss of permeability of the Bruch's membrane and choriocapillaris complex associated with age and early AMD. This cell culture model of early AMD lesions provides a novel system for testing new therapeutic interventions against sub-RPE deposit formation, an event occurring well in advance of the onset of vision loss.

Subretinal Pigment Epithelial Deposition of Drusen Components Including Hydroxyapatite in a Primary Cell Culture Model

PubMed Central

Pilgrim, Matthew G.; Lengyel, Imre; Lanzirotti, Antonio; Newville, Matt; Fearn, Sarah; Emri, Eszter; Knowles, Jonathan C.; Messinger, Jeffrey D.; Read, Russell W.; Guidry, Clyde; Curcio, Christine A.

2017-01-01

Purpose Extracellular deposits containing hydroxyapatite, lipids, proteins, and trace metals that form between the basal lamina of the RPE and the inner collagenous layer of Bruch's membrane are hallmarks of early AMD. We examined whether cultured RPE cells could produce extracellular deposits containing all of these molecular components. Methods Retinal pigment epithelium cells isolated from freshly enucleated porcine eyes were cultured on Transwell membranes for up to 6 months. Deposit composition and structure were characterized using light, fluorescence, and electron microscopy; synchrotron x-ray diffraction and x-ray fluorescence; secondary ion mass spectroscopy; and immunohistochemistry. Results Apparently functional primary RPE cells, when cultured on 10-μm-thick inserts with 0.4-μm-diameter pores, can produce sub-RPE deposits that contain hydroxyapatite, lipids, proteins, and trace elements, without outer segment supplementation, by 12 weeks. Conclusions The data suggest that sub-RPE deposit formation is initiated, and probably regulated, by the RPE, as well as the loss of permeability of the Bruch's membrane and choriocapillaris complex associated with age and early AMD. This cell culture model of early AMD lesions provides a novel system for testing new therapeutic interventions against sub-RPE deposit formation, an event occurring well in advance of the onset of vision loss. PMID:28146236

Subretinal Pigment Epithelial Deposition of Drusen Components Including Hydroxyapatite in a Primary Cell Culture Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pilgrim, Matthew G.; Lengyel, Imre; Lanzirotti, Antonio

Extracellular deposits containing hydroxyapatite, lipids, proteins, and trace metals that form between the basal lamina of the RPE and the inner collagenous layer of Bruch’s membrane are hallmarks of early AMD. We examined whether cultured RPE cells could produce extracellular deposits containing all of these molecular components. Retinal pigment epithelium cells isolated from freshly enucleated porcine eyes were cultured on Transwell membranes for up to 6 months. Deposit composition and structure were characterized using light, fluorescence, and electron microscopy; synchrotron x-ray diffraction and x-ray fluorescence; secondary ion mass spectroscopy; and immunohistochemistry. Apparently functional primary RPE cells, when cultured on 10-lm-thickmore » inserts with 0.4-lm-diameter pores, can produce sub-RPE deposits that contain hydroxyapatite, lipids, proteins, and trace elements, without outer segment supplementation, by 12 weeks. In conclusion, the data suggest that sub-RPE deposit formation is initiated, and probably regulated, by the RPE, as well as the loss of permeability of the Bruch’s membrane and choriocapillaris complex associated with age and early AMD. This cell culture model of early AMD lesions provides a novel system for testing new therapeutic interventions against sub-RPE deposit formation, an event occurring well in advance of the onset of vision loss.« less

A multiparametric analysis of the Einstein sample of early-type galaxies. 2: Galaxy formation history and properties of the interstellar medium

NASA Technical Reports Server (NTRS)

Eskridge, Paul B.; Fabbiano, Giuseppina; Kim, Dong-Woo

1995-01-01

We have conducted bivariate and multivariate statistical analysis of data measuring the integrated luminosity, shape, and potential depth of the Einstein sample of early-type galaxies (presented by Fabbiano et al. 1992). We find significant correlations between the X-ray properties and the axial ratios (a/b) of our sample, such that the roundest systems tend to have the highest L(sub x) and L(sub x)/L(sub B). The most radio-loud objects are also the roundest. We confirm the assertion of Bender et al. (1989) that galaxies with high L(sub x) are boxy (have negative a(sub 4)). Both a/b and a(sub 4) are correlated with L(sub B), but not with IRAS 12 um and 100 um luminosities. There are strong correlations between L(sub x), Mg(sub 2), and sigma(sub nu) in the sense that those systems with the deepest potential wells have the highest L(sub x) and Mg(sub 2). Thus the depth of the potential well appears to govern both the ability to reatin an ISM at the present epoch and to retain the enriched ejecta of early star formation bursts. Both L(sub x)/L(sub B) and L(sub 6) (the 6 cm radio luminosity) show threshold effects with sigma(sub nu) exhibiting sharp increases at log sigma(sub nu) approximately = 2.2. Finally, there is clearly an interrelationship between the various stellar and structural parameters: The scatter in the bivariate relationships between the shape parameters (a/b and a(sub 4)) and the depth parameter sigma(sub nu) is a function of abundance in the sense that, for a given a(sub 4) or a/b, the systems with the highest sigma(sub nu) also have the highest Mg(sub 2). Furthermore, for a constant sigma(sun nu), disky galaxies tend to have higher Mg(sub 2) than boxy ones. Alternatively, for a given abundance, boxy ellipticals tend to be more massive than disky ellipticals. One possibility is that early-type galaxies of a given mass, originating from mergers (boxy ellipticals), have lower abundances than 'primordial' (disky) early-type galaxies. Another is that disky inner isophotes are due not to primordial dissipation collapse, but to either the self-gravitating inner disks of captured spirals or the dissipational collapse of new disk structures from the premerger ISM. The high measured nuclear Mg(sub 2) values would thus be due to enrichment from secondary bursts of star formation triggered by the merging event.

Dynamics of fragment formation in neutron-rich matter

NASA Astrophysics Data System (ADS)

Alcain, P. N.; Dorso, C. O.

2018-01-01

Background: Neutron stars are astronomical systems with nucleons subjected to extreme conditions. Due to the longer range Coulomb repulsion between protons, the system has structural inhomogeneities. Several interactions tailored to reproduce nuclear matter plus a screened Coulomb term reproduce these inhomogeneities known as nuclear pasta. These structural inhomogeneities, located in the crusts of neutron stars, can also arise in expanding systems depending on the thermodynamic conditions (temperature, proton fraction, etc.) and the expansion velocity. Purpose: We aim to find the dynamics of the fragment formation for expanding systems simulated according to the little big bang model. This expansion resembles the evolution of merging neutron stars. Method: We study the dynamics of the nucleons with semiclassical molecular dynamics models. Starting with an equilibrium configuration, we expand the system homogeneously until we arrive at an asymptotic configuration (i.e., very low final densities). We study, with four different cluster recognition algorithms, the fragment distribution throughout this expansion and the dynamics of the cluster formation. Results: Studying the topology of the equilibrium states, before the expansion, we reproduced the known pasta phases plus a novel phase we called pregnocchi, consisting of proton aggregates embedded in a neutron sea. We have identified different fragmentation regimes, depending on the initial temperature and fragment velocity. In particular, for the already mentioned pregnocchi, a neutron cloud surrounds the clusters during the early stages of the expansion, resulting in systems that give rise to configurations compatible with the emergence of the r process. Conclusions: We showed that a proper identification of the cluster distribution is highly dependent on the cluster recognition algorithm chosen, and found that the early cluster recognition algorithm (ECRA) was the most stable one. This approach allowed us to identify the dynamics of the fragment formation. These calculations pave the way to a comparison between Earth experiments and neutron star studies.

Metamorphic sole formation reveals plate interface rheology during early subduction

NASA Astrophysics Data System (ADS)

Mathieu, S.; Agard, P.; Dubacq, B.; Plunder, A.; Prigent, C.

2015-12-01

Metamorphic soles are m to ~500m thick tectonic slices welded beneath most large ophiolites. They correspond to highly to mildly deformed portions of oceanic lithosphere metamorphosed at amphibolite to granulite facies peak conditions. Metamorphic soles are interpreted as formed ≤1-2Ma after intraoceanic subduction initiation by heat transfer from the hot, incipient mantle wegde to the underthrusting lower plate. Their early accretion and exhumation together with the future ophiolite implies at least one jump of the subduction plate interface from above to below the metamorphic sole. Metamorphic soles thus represent one of the few remnants of the very early evolution of the subduction plate interface and provide major constraints on the thermal structure and the effective rheology of the crust and mantle along the nascent slab interface.We herein present a structural and petrological detailed description of the Oman and Turkey metamorphic soles. Both soles present a steep inverted metamorphic structure, with isograds subparallel to the peridotite contact, in which the proportion of mafic rocks, pressure and temperature conditions increase upward. They comprise, as most metamorphic soles worldwide, two main units: (1) a high-grade unit adjacent to the overlying peridotite composed of granulitized to amphibolized metabasalts, with rare metasedimentary interlayers (~800±100ºC at 10±2kbar) and (2) a low-grade greenschist facies unit composed of metasedimentary rocks with rare metatuffs (~500±100ºC at 5±2kbar). We provide for the first time refined P-T peak condition estimations by means of pseudosection modelling and maximum temperature constraints for the Oman low-grade sole by RAMAN thermometry. In order to quantify micro-scale deformations trough the sole, we also present EBSD data on the Oman garnet-bearing and garnet-free high-grade sole.With these new constraints, we finally propose a new conceptual mechanical model for metamorphic sole formation. This model excludes the presence of a continuous inverted metamorphic gradient through the sole but implies the stacking of several homogeneous slivers to constitute the present structure of the sole. These successive thrusts are the result of rheological changes as the plate interface progressively cools.

Crystal structure of the inactive state of the receiver domain of Spo0A from Paenisporosarcina sp. TG-14, a psychrophilic bacterium isolated from an Antarctic glacier.

PubMed

Lee, Chang Woo; Park, Sun-Ha; Lee, Sung Gu; Shin, Seung Chul; Han, Se Jong; Kim, Han-Woo; Park, Hyun Ho; Kim, Sunghwan; Kim, Hak Jun; Park, Hyun; Park, HaJeung; Lee, Jun Hyuck

2017-06-01

The two-component phosphorelay system is the most prevalent mechanism for sensing and transducing environmental signals in bacteria. Spore formation, which relies on the two-component phosphorelay system, enables the long-term survival of the glacial bacterium Paenisporosarcina sp. TG-14 in the extreme cold environment. Spo0A is a key response regulator of the phosphorelay system in the early stage of spore formation. The protein is composed of a regulatory N-terminal phospho-receiver domain and a DNA-binding C-terminal activator domain. We solved the three-dimensional structure of the unphosphorylated (inactive) form of the receiver domain of Spo0A (PaSpo0A-R) from Paenisporosarcina sp. TG-14. A structural comparison with phosphorylated (active form) Spo0A from Bacillus stearothermophilus (BsSpo0A) showed minor notable differences. A molecular dynamics study of a model of the active form and the crystal structures revealed significant differences in the α4 helix and the preceding loop region where phosphorylation occurs. Although an oligomerization study of PaSpo0A-R by analytical ultracentrifugation (AUC) has shown that the protein is in a monomeric state in solution, both crosslinking and crystal-packing analyses indicate the possibility of weak dimer formation by a previously undocumented mechanism. Collectively, these observations provide insight into the mechanism of phosphorylation-dependent activation unique to Spo0A.

Division H Commission 33: Structure & Dynamics of the Galactic System

NASA Astrophysics Data System (ADS)

Nordström, Birgitta; Bland-Hawthorn, Joss; Wyse, Rosemary; Athanassoula, Lia; Feltzing, Sofia; Jog, Chanda; Lockman, Jay; Minniti, Dante; Robin, Annie

2016-04-01

Research on the structure and dynamics of the Galactic System covers a large field of research, from formation scenarios to long-term evolution and secular processes. Today we speak of near-field cosmology where the oldest parts of the Galaxy are used to probe back to early times, e.g. studying the chemical signatures of the oldest star clusters and dwarf galaxies to learn about the byproducts of the first stars. Some of the most detailed work relates to the structure of the dark matter and baryons in order to compare with expectation from N-body models. Secular processes have been identified (e.g. stellar migration) where material within the Galaxy is being reorganized by dynamical resonances and feedback processes.

Notochord vacuoles are lysosome-related organelles that function in axis and spine morphogenesis.

PubMed

Ellis, Kathryn; Bagwell, Jennifer; Bagnat, Michel

2013-03-04

The notochord plays critical structural and signaling roles during vertebrate development. At the center of the vertebrate notochord is a large fluid-filled organelle, the notochord vacuole. Although these highly conserved intracellular structures have been described for decades, little is known about the molecular mechanisms involved in their biogenesis and maintenance. Here we show that zebrafish notochord vacuoles are specialized lysosome-related organelles whose formation and maintenance requires late endosomal trafficking regulated by the vacuole-specific Rab32a and H(+)-ATPase-dependent acidification. We establish that notochord vacuoles are required for body axis elongation during embryonic development and identify a novel role in spine morphogenesis. Thus, the vertebrate notochord plays important structural roles beyond early development.

Notochord vacuoles are lysosome-related organelles that function in axis and spine morphogenesis

PubMed Central

Ellis, Kathryn; Bagwell, Jennifer

2013-01-01

The notochord plays critical structural and signaling roles during vertebrate development. At the center of the vertebrate notochord is a large fluid-filled organelle, the notochord vacuole. Although these highly conserved intracellular structures have been described for decades, little is known about the molecular mechanisms involved in their biogenesis and maintenance. Here we show that zebrafish notochord vacuoles are specialized lysosome-related organelles whose formation and maintenance requires late endosomal trafficking regulated by the vacuole-specific Rab32a and H+-ATPase–dependent acidification. We establish that notochord vacuoles are required for body axis elongation during embryonic development and identify a novel role in spine morphogenesis. Thus, the vertebrate notochord plays important structural roles beyond early development. PMID:23460678

STELLAR KINEMATICS AND STRUCTURAL PROPERTIES OF VIRGO CLUSTER DWARF EARLY-TYPE GALAXIES FROM THE SMAKCED PROJECT. III. ANGULAR MOMENTUM AND CONSTRAINTS ON FORMATION SCENARIOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Toloba, E.; Guhathakurta, P.; Boselli, A.

2015-02-01

We analyze the stellar kinematics of 39 dwarf early-type galaxies (dEs) in the Virgo Cluster. Based on the specific stellar angular momentum λ{sub Re} and the ellipticity, we find 11 slow rotators and 28 fast rotators. The fast rotators in the outer parts of the Virgo Cluster rotate significantly faster than fast rotators in the inner parts of the cluster. Moreover, 10 out of the 11 slow rotators are located in the inner 3° (D < 1 Mpc) of the cluster. The fast rotators contain subtle disk-like structures that are visible in high-pass filtered optical images, while the slow rotatorsmore » do not exhibit these structures. In addition, two of the dEs have kinematically decoupled cores and four more have emission partially filling in the Balmer absorption lines. These properties suggest that Virgo Cluster dEs may have originated from late-type star-forming galaxies that were transformed by the environment after their infall into the cluster. The correlation between λ{sub Re} and the clustercentric distance can be explained by a scenario where low luminosity star-forming galaxies fall into the cluster, their gas is rapidly removed by ram-pressure stripping, although some of it can be retained in their core, their star formation is quenched but their stellar kinematics are preserved. After a long time in the cluster and several passes through its center, the galaxies are heated up and transformed into slow rotating dEs.« less

Vacuolar processing enzyme plays an essential role in the crystalline structure of glutelin in rice seed.

PubMed

Kumamaru, Toshihiro; Uemura, Yuji; Inoue, Yoshimi; Takemoto, Yoko; Siddiqui, Sadar Uddin; Ogawa, Masahiro; Hara-Nishimura, Ikuko; Satoh, Hikaru

2010-01-01

To identify the function of genes that regulate the processing of proglutelin, we performed an analysis of glup3 mutants, which accumulates excess amounts of proglutelin and lack the vacuolar processing enzyme (VPE). VPE activity in developing seeds from glup3 lines was reduced remarkably compared with the wild type. DNA sequencing of the VPE gene in glup3 mutants revealed either amino acid substitutions or the appearance of a stop codon within the coding region. Microscopic observations showed that alpha-globulin and proglutelin were distributed homogeneously within glup3 protein storage vacuoles (PSVs), and that glup3 PSVs lacked the crystalline lattice structure typical of wild-type PSVs. This suggests that the processing of proglutelin by VPE in rice is essential for proper PSV structure and compartmentalization of storage proteins. Growth retardation in glup3 seedlings was also observed, indicating that the processing of proglutelin influences early seedling development. These findings indicate that storage of glutelin in its mature form as a crystalline structure in PSVs is required for the rapid use of glutelin as a source of amino acids during early seedling development. In conclusion, VPE plays an important role in the formation of protein crystalline structures in PSVs.

Seismites in a Proterozoic tidal succession, Singhbhum, Bihar, India

NASA Astrophysics Data System (ADS)

Bhattacharya, H. N.; Bandyopadhyay, Sandip

1998-08-01

Early Proterozoic metasediments of the Chaibasa Formation (Galudih-Ghatsila-Dhalbhumgarh region, Singhbhum, Bihar, India) comprise a number of cyclic fining-upward prograding successions of tidalites. The tidalites show indications for earthquakes in the form of synsedimentary deformation features, apart from the structures due to high-energy wave action. Deformed cross-bedding, convolute laminations, synsedimentary faults, graben-like structures, sandstone dykes, pseudonodules and slump folds record the seismic activity. A gradual decline in the frequency of seismites and tsunami-related depositional features, in combination with an upward increase in thickness of the tidal cycles, are attributed to gradual diminishing of tectonic activity within the basin.

The state of the Universe.

PubMed

Coles, Peter

2005-01-20

The past 20 years have seen dramatic advances in cosmology, mostly driven by observations from new telescopes and detectors. These instruments have allowed astronomers to map out the large-scale structure of the Universe and probe the very early stages of its evolution. We seem to have established the basic parameters describing the behaviour of our expanding Universe, thereby putting cosmology on a firm empirical footing. But the emerging 'standard' model leaves many details of galaxy formation still to be worked out, and new ideas are emerging that challenge the theoretical framework on which the structure of the Big Bang is based. There is still a great deal left to explore in cosmology.

Effect of oxygen plasma etching on pore size-controlled 3D polycaprolactone scaffolds for enhancing the early new bone formation in rabbit calvaria.

PubMed

Kook, Min-Suk; Roh, Hee-Sang; Kim, Byung-Hoon

2018-05-02

This study was to investigate the effects of O 2 plasma-etching of the 3D polycaprolactone (PCL) scaffold surface on preosteoblast cell proliferation and differentiation, and early new bone formation. The PCL scaffolds were fabricated by 3D printing technique. After O 2 plasma treatment, surface characterizations were examined by scanning electron microscopy, atomic force microscopy, and contact angle. MTT assay was used to determine cell proliferation. To investigate the early new bone formation, rabbits were sacrificed at 2 weeks for histological analyses. As the O 2 plasma etching time is increased, roughness and hydrophilicity of the PCL scaffold surface increased. The cell proliferation and differentiation on plasma-etched samples was significantly increased than on untreated samples. At 2 weeks, early new bone formation in O 2 plasma-etched PCL scaffolds was the higher than that of untreated scaffolds. The O 2 plasma-etched PCL scaffolds showed increased preosteoblast differentiation as well as increased new bone formation.

Gravitational Instabilities in Disks: From Polytropes to Protoplanets?

NASA Astrophysics Data System (ADS)

Durisen, R. H.

2004-12-01

Gravitational instabilities (GI's) probably occur in disks around young stellar objects during their early embedded phase. This paper reviews what is known about the nonlinear consequences of GI's for planet formation and disk evolution. All researchers agree that, for sufficiently fast cooling, disks fragment into dense clumps or arclike structures, but there is no universal agreement about whether fast enough cooling to cause fragmentation ever occurs and, if it does, whether any clumps that form will become bound protoplanets.

Isotopic Studies on Structure-function Relationships of Nucleic Acids and Enzymes. Three Year Progress Report, May 1972 -- October 1975

DOE R&D Accomplishments Database

Boyer, P. D.

1975-01-01

The most important accomplishments and major contributions are tabulated with citations to published work. The more important unpublished contributions deal with the early events in ATP formation by chloroplasts, energy linkage in reaction steps of oxidative phosphorylation, molecular integrity of parental DNA, bound pyrophosphate and {sup 18}O-exchanges by inorganic pyrophosphatase, and glutamine synthetase exchanges and mechanisms. These are being prepared for publication. (JSR)

The axolotl limb blastema: cellular and molecular mechanisms driving blastema formation and limb regeneration in tetrapods

PubMed Central

McCusker, Catherine; Bryant, Susan V.

2015-01-01

Abstract The axolotl is one of the few tetrapods that are capable of regenerating complicated biological structures, such as complete limbs, throughout adulthood. Upon injury the axolotl generates a population of regeneration‐competent limb progenitor cells known as the blastema, which will grow, establish pattern, and differentiate into the missing limb structures. In this review we focus on the crucial early events that occur during wound healing, the neural−epithelial interactions that drive the formation of the early blastema, and how these mechanisms differ from those of other species that have restricted regenerative potential, such as humans. We also discuss how the presence of cells from the different axes of the limb is required for the continued growth and establishment of pattern in the blastema as described in the polar coordinate model, and how this positional information is reprogrammed in blastema cells during regeneration. Multiple cell types from the mature limb stump contribute to the blastema at different stages of regeneration, and we discuss the contribution of these types to the regenerate with reference to whether they are “pattern‐forming” or “pattern‐following” cells. Lastly, we explain how an engineering approach will help resolve unanswered questions in limb regeneration, with the goal of translating these concepts to developing better human regenerative therapies. PMID:27499868

Resveratrol Interferes with an Early Step in the Fibrillization Pathway of Human Lysozyme and Modulates it towards Less-Toxic, Off-Pathway Aggregates.

PubMed

Kamal Zaidi, Fatima; Bhat, Rajiv

2018-01-18

The effect of resveratrol, a polyphenol in red wine, on the amyloid fibril formation of human lysozyme (HuL) was investigated, towards elucidating the mechanism of resveratrol action and probing its role as a possible modulator of lysozyme aggregation and toxicity. By using a number of biophysical tools, resveratrol was observed to alter the fibrillization kinetics of HuL and inhibit its fibrillization by binding with weak to moderate affinity to the conformations populated at the early stages of the pathway with concomitant stabilization of these initial conformations. The marginal decrease in the lifetime of HuL in the presence of resveratrol by time-resolved fluorescence measurements indicated the involvement of a static quenching mechanism in the interaction between HuL and resveratrol. Docking studies predicted the binding of resveratrol to aggregation-prone regions in HuL, and structure and activity analyses demonstrated the retention of much of the α-helical structure and activity of HuL in the presence of resveratrol. Resveratrol modulated the fibrillization pathway towards less-hydrophobic, less-toxic, off-pathway aggregates. These results demonstrate that binding of resveratrol to HuL could protect against the formation of pathogenic, cytotoxic aggregates formed in amyloidogenic disorders, such as systemic amyloidosis; thus suggesting its potential as a plausible therapeutic agent against lysozyme amyloidosis. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Early formation of preferential flow in a homogeneous snowpack observed by micro-CT

NASA Astrophysics Data System (ADS)

Avanzi, Francesco; Petrucci, Giacomo; Matzl, Margret; Schneebeli, Martin; De Michele, Carlo

2017-05-01

We performed X-ray microtomographic observations of wet-snow metamorphism during controlled continuous melting and melt-freeze events in the laboratory. Three blocks of snow were sieved into boxes and subjected to cyclic, superficial heating or heating-cooling to reproduce vertical water infiltration patterns in snow similarly to natural conditions. Periodically, samples were taken at different heights and scanned. Results suggest that wet-snow metamorphism dynamics are highly heterogeneous even in an initially homogeneous snowpack. Consistent with previous work, we observed an increase with time in the thickness of the ice structure, which is a measure of grain size. However, this was coupled with large temporal scatter between consecutive measurements of the specific surface area and of the statistical moments of grain thickness distributions. Because of marked differences in the right tail, grain thickness distributions did not show shape invariance with time, contrary to previous analyses. In our experiments, wet-snow metamorphism showed two strikingly different patterns: homogeneous coarsening superimposed by faster heterogeneous coarsening in areas that were affected by preferential percolation of water. Liquid water movement in snow and fast structural evolution may be thus intrinsically coupled by early formation of preferential flow at local scale. These observations suggest that further experiments are highly needed to fully understand wet-snow metamorphism and infiltration patterns in a natural snowpack.

Evolution of Devonian carbonate-shelf margin, Nevada

USGS Publications Warehouse

Morrow, J.R.; Sandberg, C.A.

2008-01-01

The north-trending, 550-km-long Nevada segment of the Devonian carbonate-shelf margin, which fringed western North America, evidences the complex interaction of paleotectonics, eustasy, biotic changes, and bolide impact-related influences. Margin reconstruction is complicated by mid-Paleozoic to Paleogene compressional tectonics and younger extensional and strike-slip faulting. Reports published during the past three decades identify 12 important events that influenced development of shelf-margin settings; in chronological order, these are: (1) Early Devonian inheritance of Silurian stable shelf inargin, (2) formation of Early to early Middle 'Devonian shelf-margin basins, (3) propradation of later Middle Devonian shelf margin, (4) late Middle Devonian Taghanic ondap and continuing long-term Frasnian transgression, (5) initiation of latest Middle Devonian to early Frasnian proto-Antler orogenic forebulge, (6) mid-Frasnian Alamo Impact, (7) accelerated development of proto-Antler forebulge and backbulge Pilot basin, (8) global late Frasnian sentichatovae sea-level rise, (9) end-Frasnian sea-level fluctuations and ensuing mass extinction, (10) long-term Famennian regression and continept-wide erosion, (11) late Famennian emergence: of Ahtler orogenic highlands, and (12) end-Devonian eustatic sea-level fall. Although of considerable value for understanding facies relationships and geometries, existing standard carbonate platform-margin models developed for passive settings else-where do not adequately describe the diverse depositional and, structural settings along the Nevada Devonian platform margin. Recent structural and geochemical studies suggest that the Early to Middle Devonian-shelf-margin basins may have been fault-bound and controlled by inherited Precambrian structure. Subsequently, the migrating latest Middle to Late Devonian Antler orogenic forebulge exerted a dominant control on shelf-margin position, morphology, and sedimentation. ??Geological Society of America.

Hemivertebra resection and osteotomies in congenital spine deformity.

PubMed

Ruf, Michael; Jensen, Rubens; Letko, Lynn; Harms, Jürgen

2009-08-01

Retrospective study of posterior hemivertebra resection and osteotomies with transpedicular instrumentation in very young children. Assessment of early intervention in congenital scoliosis with almost complete correction of the main deformity. There is a trend to early correction of congenital deformities, however, there is a lack of long-term follow-up. Forty-one children aged 1 to 6 years with congenital scoliosis were operated on by hemivertebra resection by a posterior only approach with transpedicular instrumentation. Mean age at time of surgery was 3 years 5 months. They were retrospectively studied with a mean follow-up of 6 years 2 months. In group 1 (patients without bar formation), the average Cobb angle of the main curve was 36 degrees before surgery and 7 degrees after surgery. Compensatory cranial curve improved spontaneously from 15 degrees to 3 degrees, compensatory caudal curve from 17 degrees to 4 degrees. The angle of kyphosis was 22 degrees before surgery and 8 degrees after surgery. In group 2 (patients with bar formation) the main curve improved from 69 degrees to 23 degrees, cranial curve from 27 degrees to 11 degrees, caudal curve from 34 degrees to 14 degrees, and kyphosis from 24 degrees to 9 degrees. Posterior hemivertebra resection, in case of bar formation with osteotomy of the bar, allows for excellent correction in both the frontal and sagittal planes, with a short segment of fusion. Early surgery in young children prevents the development of severe local deformities and secondary structural curves, thus allowing for normal growth in the unaffected parts of the spine.

Sponge cell reaggregation: Cellular structure and morphogenetic potencies of multicellular aggregates.

PubMed

Lavrov, Andrey I; Kosevich, Igor A

2016-02-01

Sponges (phylum Porifera) are one of the most ancient extant multicellular animals and can provide valuable insights into origin and early evolution of Metazoa. High plasticity of cell differentiations and anatomical structure is characteristic feature of sponges. Present study deals with sponge cell reaggregation after dissociation as the most outstanding case of sponge plasticity. Dynamic of cell reaggregation and structure of multicellular aggregates of three demosponge species (Halichondria panicea (Pallas, 1766), Haliclona aquaeductus (Sсhmidt, 1862), and Halisarca dujardinii Johnston, 1842) were studied. Sponge tissue dissociation was performed mechanically. Resulting cell suspensions were cultured at 8-10°C for at least 5 days. Structure of multicellular aggregates was studied by light, transmission and scanning electron microscopy. Studied species share common stages of cell reaggregation-primary multicellular aggregates, early-stage primmorphs and primmorphs, but the rate of reaggregation varies considerably among species. Only cells of H. dujardinii are able to reconstruct functional and viable sponge after primmorphs formation. Sponge reconstruction in this species occurs due to active cell locomotion. Development of H. aquaeductus and H. panicea cells ceases at the stages of early primmorphs and primmorphs, respectively. Development of aggregates of these species is most likely arrested due to immobility of the majority of cells inside them. However, the inability of certain sponge species to reconstruct functional and viable individuals during cell reaggregation may be not a permanent species-specific characteristic, but depends on various factors, including the stage of the life cycle and experimental conditions. © 2016 Wiley Periodicals, Inc.

Stably maintained dendritic spines are associated with lifelong memories

PubMed Central

Yang, Guang; Pan, Feng; Gan, Wen-Biao

2016-01-01

Changes in synaptic connections are considered essential for learning and memory formation1–6. However, it is unknown how neural circuits undergo continuous synaptic changes during learning while maintaining lifelong memories. Here we show, by following postsynaptic dendritic spines over time in the mouse cortex7–8, that learning and novel sensory experience lead to spine formation and elimination by a protracted process. The extent of spine remodelling correlates with behavioural improvement after learning, suggesting a crucial role of synaptic structural plasticity in memory formation and storage. Importantly, a small fraction of new spines induced by novel experience, together with most spines formed early during development and surviving experience-dependent elimination, are preserved throughout the entire life of an animal. These studies indicate that learning and daily sensory experience leave minute but permanent marks on cortical connections and suggest that lifelong memories are stored in largely stably connected synaptic networks. PMID:19946265

Gel phase formation in dilute triblock copolyelectrolyte complexes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Srivastava, Samanvaya; Andreev, Marat; Levi, Adam E.

Assembly of oppositely charged triblock copolyelectrolytes into phase-separated gels at low polymer concentrations (<1% by mass) has been observed in scattering experiments and molecular dynamics simulations. Here we show that in contrast to uncharged, amphiphilic block copolymers that form discrete micelles at low concentrations and enter a phase of strongly interacting micelles in a gradual manner with increasing concentration, the formation of a dilute phase of individual micelles is prevented in polyelectrolyte complexation-driven assembly of triblock copolyelectrolytes. Gel phases form and phase separate almost instantaneously on solvation of the copolymers. Furthermore, molecular models of self-assembly demonstrate the presence of oligo-chainmore » aggregates in early stages of copolyelectrolyte assembly, at experimentally unobservable polymer concentrations. Our discoveries contribute to the fundamental understanding of the structure and pathways of complexation-driven assemblies, and raise intriguing prospects for gel formation at extraordinarily low concentrations, with applications in tissue engineering, agriculture, water purification and theranostics.« less

Gel phase formation in dilute triblock copolyelectrolyte complexes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Srivastava, Samanvaya; Andreev, Marat; Levi, Adam E.

Assembly of oppositely charged triblock copolyelectrolytes into phase-separated gels at low polymer concentrations (<1% by mass) has been observed in scattering experiments and molecular dynamics simulations. Here we show that in contrast to uncharged, amphiphilic block copolymers that form discrete micelles at low concentrations and enter a phase of strongly interacting micelles in a gradual manner with increasing concentration, the formation of a dilute phase of individual micelles is prevented in polyelectrolyte complexation-driven assembly of triblock copolyelectrolytes. Gel phases form and phase separate almost instantaneously on solvation of the copolymers. Furthermore, molecular models of self-assembly demonstrate the presence of oligo-chainmore » aggregates in early stages of copolyelectrolyte assembly, at experimentally unobservable polymer concentrations. Finally, our discoveries contribute to the fundamental understanding of the structure and pathways of complexation-driven assemblies, and raise intriguing prospects for gel formation at extraordinarily low concentrations, with applications in tissue engineering, agriculture, water purification and theranostics.« less

Gel phase formation in dilute triblock copolyelectrolyte complexes

DOE PAGES

Srivastava, Samanvaya; Andreev, Marat; Levi, Adam E.; ...

2017-02-23

Assembly of oppositely charged triblock copolyelectrolytes into phase-separated gels at low polymer concentrations (<1% by mass) has been observed in scattering experiments and molecular dynamics simulations. Here we show that in contrast to uncharged, amphiphilic block copolymers that form discrete micelles at low concentrations and enter a phase of strongly interacting micelles in a gradual manner with increasing concentration, the formation of a dilute phase of individual micelles is prevented in polyelectrolyte complexation-driven assembly of triblock copolyelectrolytes. Gel phases form and phase separate almost instantaneously on solvation of the copolymers. Furthermore, molecular models of self-assembly demonstrate the presence of oligo-chainmore » aggregates in early stages of copolyelectrolyte assembly, at experimentally unobservable polymer concentrations. Finally, our discoveries contribute to the fundamental understanding of the structure and pathways of complexation-driven assemblies, and raise intriguing prospects for gel formation at extraordinarily low concentrations, with applications in tissue engineering, agriculture, water purification and theranostics.« less

Gel phase formation in dilute triblock copolyelectrolyte complexes

NASA Astrophysics Data System (ADS)

Srivastava, Samanvaya; Andreev, Marat; Levi, Adam E.; Goldfeld, David J.; Mao, Jun; Heller, William T.; Prabhu, Vivek M.; de Pablo, Juan J.; Tirrell, Matthew V.

2017-02-01

Assembly of oppositely charged triblock copolyelectrolytes into phase-separated gels at low polymer concentrations (<1% by mass) has been observed in scattering experiments and molecular dynamics simulations. Here we show that in contrast to uncharged, amphiphilic block copolymers that form discrete micelles at low concentrations and enter a phase of strongly interacting micelles in a gradual manner with increasing concentration, the formation of a dilute phase of individual micelles is prevented in polyelectrolyte complexation-driven assembly of triblock copolyelectrolytes. Gel phases form and phase separate almost instantaneously on solvation of the copolymers. Furthermore, molecular models of self-assembly demonstrate the presence of oligo-chain aggregates in early stages of copolyelectrolyte assembly, at experimentally unobservable polymer concentrations. Our discoveries contribute to the fundamental understanding of the structure and pathways of complexation-driven assemblies, and raise intriguing prospects for gel formation at extraordinarily low concentrations, with applications in tissue engineering, agriculture, water purification and theranostics.

Provenance and geochronological insights into Late Cretaceous-Paleogene foreland basin development in the Subandean Zone and Oriente Basin of Ecuador

NASA Astrophysics Data System (ADS)

Gutierrez, E. G.; Horton, B. K.; Vallejo, C.

2017-12-01

The tectonic history of the Oriente foreland basin and adjacent Subandean Zone of Ecuador during contractional mountain building in the northern Andes can be revealed through integrated stratigraphic, geochronological, structural, and provenance analyses of clastic sediments deposited during orogenesis. We present new maximum depositional ages and a comprehensive provenance analysis for key stratigraphic units deposited in the western (proximal) Oriente Basin. Detrital zircon U-Pb ages were obtained from Upper Cretaceous and Cenozoic clastic formations from exposures in the Subandean Zone. The sampled stratigraphic intervals span critical timeframes during orogenesis in the Ecuadorian Andes. Cenozoic formations have poorly defined chronostratigraphic relationships and are therefore a primary target of this study. In addition, the newly acquired U-Pb age spectra allow clear identification of the various sediment source regions that fed the system during distinct depositional phases. Maximum depositional ages (MDA) were obtained for five samples from three formations: the Tena (MDA=69.6 Ma), Chalcana (MDA=29.3 Ma), and Arajuno (MDA= 17.1, 14.2, 12.8 Ma) Formations, placing them in the Maastrichtian, early Oligocene, and early-middle Miocene, respectively. Detrital zircon U-Pb ages identify clear signatures of at least four different sources: craton (1600-1300 Ma, 1250-900 Ma), Eastern Cordillera fold-thrust belt (600-450 Ma, 250-145 Ma), Western Cordillera magmatic arc (<88 Ma), and recycling of cratonic material from the Eastern Cordillera. The U-Pb age spectra of the Upper Cretaceous-Paleogene type sections allow us to recognize variations in the contribution of each recognized source over time. We identify recycled material with two dominant peak ages (1250-900 Ma and 600-450 Ma), material derived from the adjacent uplifted orogen or recycled from foredeep sediments incorporated into the deforming wedge. Finally, an apparent unroofing event is inferred from a 250-145 Ma age peak in the Plio-Pleistocene Mesa-Mera Formation revealing the persistent shortening deformation influencing the structural configuration and sediment dispersal patterns of the Oriente Basin and Subandean Zone.

Formaldehyde in Absorption: Tracing Molecular Gas in Early-Type Galaxies

NASA Astrophysics Data System (ADS)

Dollhopf, Niklaus M.; Donovan Meyer, Jennifer

2016-01-01

Early-Type Galaxies (ETGs) have been long-classified as the red, ellipsoidal branch of the classic Hubble tuning fork diagram of galactic structure. In part with this classification, ETGs are thought to be molecular and atomic gas-poor with little to no recent star formation. However, recent efforts have questioned this ingrained classification. Most notably, the ATLAS3D survey of 260 ETGs within ~40 Mpc found 22% contain CO, a common tracer for molecular gas. The presence of cold molecular gas also implies the possibility for current star formation within these galaxies. Simulations do not accurately predict the recent observations and further studies are necessary to understand the mechanisms of ETGs.CO traces molecular gas starting at densities of ~102 cm-3, which makes it a good tracer of bulk molecular gas, but does little to constrain the possible locations of star formation within the cores of dense molecular gas clouds. Formaldehyde (H2CO) traces molecular gas on the order of ~104 cm-3, providing a further constraint on the location of star-forming gas, while being simple enough to possibly be abundant in gas-poor ETGs. In cold molecular clouds at or above ~104 cm-3 densities, the structure of formaldehyde enables a phenomenon in which rotational transitions have excitation temperatures driven below the temperature of the cosmic microwave background (CMB), ~2.7 K. Because the CMB radiates isotropically, formaldehyde can be observed in absorption, independent of distance, as a tracer of moderately-dense molecular clouds and star formation.This novel observation technique of formaldehyde was incorporated for observations of twelve CO-detected ETGs from the ATLAS3D sample, including NGC 4710 and PGC 8815, to investigate the presence of cold molecular gas, and possible star formation, in ETGs. We present images from the Very Large Array, used in its C-array configuration, of the J = 11,0 - 11,1 transition of formaldehyde towards these sources. We report our preliminary results here.Niklaus M. Dollhopf gratefully acknowledges the support of the National Radio Astronomy Observatory Summer Student REU Program sponsored by the National Science Foundation.

Late Neogene deformation of the Chocolate Mountains Anticlinorium: Implications for deposition of the Bouse Formation and early evolution of the Lower Colorado River

USGS Publications Warehouse

Beard, Sue; Haxel, Gordon B.; Dorsey, Rebecca J.; McDougall, Kristin A.; Jacobsen, Carl E.

2016-01-01

Deformation related to late Neogene dextral shear can explain a shift from an estuarine to lacustrine depositional environment in the southern Bouse Formation north of Yuma, Arizona. We infer that late Neogene deformation in the Chocolate Mountain Anticlinorium (CMA) created a barrier that blocked an estuary inlet, and that pre-existing and possibly active structures subsequently controlled the local course of the lower Colorado River. Structural patterns summarized below suggest that the CMA absorbed transpressional strain caused by left-stepping segments of dextral faults of the San Andreas fault system and/or the eastern California shear zone and Gulf of California shear zone. For this hypothesis to be correct, about 200-250 m of post-6 Ma, pre- ~5.3 Ma uplift along the CMA crest would be required to cut off a marine inlet. The 220-km-long CMA, cored by the early Paleogene Orocopia Schist subduction complex, extends from the Orocopia Mountains (Calif.) southeastward through the Chocolate Mountains (parallel to the southern San Andreas fault). Where Highway 78 crosses the Chocolate Mountains (Fig. 1), the CMA turns eastward through the Black Mountain-Picacho area (Calif.) and Trigo Mountains (Ariz.) into southwest Arizona. It separates southernmost Bouse Formation outcrops of the Blythe basin from subsurface Bouse outcrops to the south in the Yuma area. South of Blythe basin the CMA is transected by the lower Colorado River along a circuitous path. Here we focus on the geology of an area between the central Chocolate Mountains and the Yuma Proving Grounds in Arizona. Specific landmarks include the southeast Chocolate Mountains, Midway Mountains, Peter Kane Mountain, Black Mountain, Picacho Peak, and Gavilan Hills. For simplicity, we refer to this as the eastern Chocolate Mountains.

Context of ancient aqueous environments on Mars from in situ geologic mapping at Endeavour Crater

USGS Publications Warehouse

Crumpler, L.S.; Arvidson, R. E.; Bell, J.; Clark, B. C.; Cohen, B. A.; Farrand, W. H.; Gellert, Ralf; Golombek, M.; Grant, J. A.; Guinness, E.; Herkenhoff, Kenneth E.; Johnson, J. R.; Jolliff, B.; Ming, D. W.; Mittlefehldt, D. W.; Parker, T.; Rice, J. W.; Squyres, S. W.; Sullivan, R.; Yen, A. S.

2015-01-01

Using the Mars Exploration Rover Opportunity, we have compiled one of the first field geologic maps on Mars while traversing the Noachian terrain along the rim of the 22 km diameter Endeavour Crater (Latitude −2°16′33″, Longitude −5°10′51″). In situ mapping of the petrographic, elemental, structural, and stratigraphic characteristics of outcrops and rocks distinguishes four mappable bedrock lithologic units. Three of these rock units predate the surrounding Burns formation sulfate-rich sandstones and one, the Matijevic Formation, represents conditions on early Mars predating the formation of Endeavour Crater. The stratigraphy assembled from these observations includes several geologic unconformities. The differences in lithologic units across these unconformities record changes in the character and intensity of the Martian aqueous environment over geologic time. Water circulated through fractures in the oldest rocks over periods long enough that texturally and elementally significant alteration occurred in fracture walls. These oldest pre-Endeavour rocks and their network of mineralized and altered fractures were preserved by burial beneath impact ejecta and were subsequently exhumed and exposed. The alteration along joints in the oldest rocks and the mineralized veins and concentrations of trace metals in overlying lithologic units is direct evidence that copious volumes of mineralized and/or hydrothermal fluids circulated through the early Martian crust. The wide range in intensity of structural and chemical modification from outcrop to outcrop along the crater rim shows that the ejecta of large (>8 km in diameter) impact craters is complex. These results imply that geologic complexity is to be anticipated in other areas of Mars where cratering has been a fundamental process in the local and regional geology and mineralogy.

Structural and petrographic constraints on the stratigraphy of the Lapataia Formation, with implications for the tectonic evolution of the Fuegian Andes

NASA Astrophysics Data System (ADS)

Cao, Sebastián J.; Torres Carbonell, Pablo J.; Dimieri, Luis V.

2018-07-01

The structure of the Fuegian Andes central belt is characterized by a first phase of peak metamorphism and ductile deformation, followed by a brittle-ductile thrusting phase including juxtaposition of different (first phase) structural levels; both related to the closure and inversion of the Late Jurassic-Early Cretaceous Rocas Verdes basin. The second phase involved thrust sheets of pre-Jurassic basement, as well as Upper Jurassic and Lower Cretaceous units from the volcanic-sedimentary fill of the basin. Rock exposures in the Parque Nacional Tierra del Fuego reveal a diversity of metamorphic mineral assemblages, dynamic recrystallization grades and associated structures, evidencing a variety of protoliths and positions in the crust during their orogenic evolution. Among the units present in this sector, the Lapataia Formation portrays the higher metamorphic grade reported in the Argentine side of the Fuegian Andes, and since no precise radiometric ages have been established to date, its stratigraphic position remains a matter of debate: the discussion being whether it belongs to the pre-Jurassic basement, or the Upper Jurassic volcanic/volcaniclastic initial fill of the Rocas Verdes basin. The mapping and petrographic/microstructural study of the Lapataia Formation and those of undoubtedly Mesozoic age, allow to characterize the former as a group of rocks with great lithological affinity with the Upper Jurassic metamorphic rocks found elsewhere in the central belt of the Fuegian Andes. The main differences in metamorphic grade are indebted to its deformation at deeper crustal levels, but during the same stages than the Mesozoic rocks. Accordingly, we interpret the regional structure to be associated with the stacking of thrust sheets from different structural levels through the emplacement of a duplex system during the growth of the Fuegian Andes.

[Seasonal development of phloem in Scots pine stems].

PubMed

Antonova, G F; Stasova, V V

2006-01-01

The formation of phloem was studied for two years in stems of 50 to 60 year old trees of Scots pine (Pinus sylvestris L.) growing in nature. The development of phloem of the current year begins 10 to 20 days before the xylem formation and is completed with the termination of shoot growth in the end of June. Observations over the seasonal activity of cambium producing sieve-like cells of phloem and duration of their differentiation as compared to the xylem derivatives of cambium have shown that the maxima of formation of phloem and xylem cells could coincide or not coincide by season, while the activities of their differentiation were always at antiphase. The sieve-like cells of early phloem were separated from those of late phloem by a layer of tannin-containing cells, which are formed simultaneously with the formation of late xylem cells by the cambium. Seasonal dynamics of accumulation of starch grain in structural elements of the phloem is related to the xylem development. The content of metabolites in differentiating and mature phloem elements, in the cambium zone, and in the xylem cells growing in the radial direction depended on cell specificity, stage of their development, and type of forming wood, early or late, which differ in the cell wall parameters and, hence, requirement of assimilates. Significant differences were described between the content of low molecular weigh carbohydrates, amino acids, organic acids, and phenol compounds using two methods of calculation: per dry weight and per cell.

Geology and Geochemistry of Magmatic Rocks from the Southern Part of the Kyushu-Palau Ridge in the Philippine Sea

NASA Astrophysics Data System (ADS)

Lelikov, E. P.; Sedin, V. T.; Pugachev, A. A.

2018-03-01

The paper reports the results of a geochemical study of volcanogenic rocks from the southern part of the Kyushu-Palau Ridge. Volcanic structures, such as plateaulike rises, mountain massifs, and single volcanoes, are the major relief-forming elements of the southern part of the Kyushu-Palau Ridge. They are divided into three types according to the features of the relief and geological structure: shield, cone-shaped, and dome-shaped volcanoes. The ridge was formed on oceanic crust in the Late Mesozoic and underwent several stages of evolution with different significance and application of forces (tension and compression). Change in the geodynamic conditions during the geological evolution of the ridge mostly determined the composition of volcanic rocks of deep-mantle nature. Most of the ridge was formed by the Early Paleogene under geodynamic conditions close to the formation of oceanic islands (shield volcanoes) under tension. The island arc formed on the oceanic basement in the compression mode in the Late Eocene-Early Oligocene. Dome-shaped volcanic edifices composed of alkaline volcanic rocks were formed in the Late Oligocene-Early Miocene under tension. Based on the new geochemical data, detailed characteristics of volcanic rocks making up the shield, cone-shape, and dome-shape stratovolcanoes resulting in the features of these volcanic edifices are given for the first time. Continuous volcanism (with an age from the Cretaceous to the Late Miocene and composition from oceanic tholeiite to calc-alkaline volcanites of the island arc type) resulting in growth of the Earth's crust beneath the Kyushu-Palau Ridge was the major factor in the formation this ridge.

A General Precipitation-limited L X–T–R Relation among Early-type Galaxies

NASA Astrophysics Data System (ADS)

Voit, G. Mark; Ma, C. P.; Greene, J.; Goulding, A.; Pandya, V.; Donahue, M.; Sun, M.

2018-01-01

The relation between X-ray luminosity (L X) and ambient gas temperature (T) among massive galactic systems is an important cornerstone of both observational cosmology and galaxy-evolution modeling. In the most massive galaxy clusters, the relation is determined primarily by cosmological structure formation. In less massive systems, it primarily reflects the feedback response to radiative cooling of circumgalactic gas. Here we present a simple but powerful model for the L X–T relation as a function of physical aperture R within which those measurements are made. The model is based on the precipitation framework for AGN feedback and assumes that the circumgalactic medium is precipitation-regulated at small radii and limited by cosmological structure formation at large radii. We compare this model with many different data sets and show that it successfully reproduces the slope and upper envelope of the L X–T–R relation over the temperature range from ∼0.2 keV through ≳ 10 {keV}. Our findings strongly suggest that the feedback mechanisms responsible for regulating star formation in individual massive galaxies have much in common with the precipitation-triggered feedback that appears to regulate galaxy-cluster cores.

Shaping Disk Galaxy Stellar Populations via Internal and External Processes

NASA Astrophysics Data System (ADS)

Roškar, Rok

2015-03-01

In recent years, effects such as the radial migration of stars in disks have been recognized as important drivers of the properties of stellar populations. Radial migration arises due to perturbative effects of disk structures such as bars and spiral arms, and can deposit stars formed in disks to regions far from their birthplaces. Migrant stars can significantly affect the demographics of their new locales, especially in low-density regions such as in the outer disks. However, in the cosmological environment, other effects such as mergers and filamentary gas accretion also influence the disk formation process. Understanding the relative importance of these processes on the detailed evolution of stellar population signatures is crucial for reconstructing the history of the Milky Way and other nearby galaxies. In the Milky Way disk in particular, the formation of the thickened component has recently attracted much attention due to its potential to serve as a diagnostic of the galaxy's early history. Some recent work suggests, however, that the vertical structure of Milky Way stellar populations is consistent with models that build up the thickened component through migration. I discuss these developments in the context of cosmological galaxy formation.

Xenia: A Probe of Cosmic Chemical Evolution

NASA Technical Reports Server (NTRS)

Kouveliotou, Chryssa; Piro, L.

2008-01-01

Xenia is a concept study for a medium-size astrophysical cosmology mission addressing the Cosmic Origins key objective of NASA's Science Plan. The fundamental goal of this objective is to understand the formation and evolution of structures on various scales from the early Universe to the present time (stars, galaxies and the cosmic web). Xenia will use X-and y-ray monitoring and wide field X-ray imaging and high-resolution spectroscopy to collect essential information from three major tracers of these cosmic structures: the Warm Hot Intergalactic Medium (WHIM), Galaxy Clusters and Gamma Ray Bursts (GRBs). Our goal is to trace the chemo-dynamical history of the ubiquitous warm hot diffuse baryon component in the Universe residing in cosmic filaments and clusters of galaxies up to its formation epoch (at z =0-2) and to map star formation and galaxy metal enrichment into the re-ionization era beyond z 6. The concept of Xenia (Greek for "hospitality") evolved in parallel with the Explorer of Diffuse Emission and GRB Explosions (EDGE), a mission proposed by a multinational collaboration to the ESA Cosmic Vision 2015. Xenia incorporates the European and Japanese collaborators into a U.S. led mission that builds on the scientific objectives and technological readiness of EDGE.

Detailed Quantitative Classifications of Galaxy Morphology

NASA Astrophysics Data System (ADS)

Nair, Preethi

2018-01-01

Understanding the physical processes responsible for the growth of galaxies is one of the key challenges in extragalactic astronomy. The assembly history of a galaxy is imprinted in a galaxy’s detailed morphology. The bulge-to-total ratio of galaxies, the presence or absence of bars, rings, spiral arms, tidal tails etc, all have implications for the past merger, star formation, and feedback history of a galaxy. However, current quantitative galaxy classification schemes are only useful for broad binning. They cannot classify or exploit the wide variety of galaxy structures seen in nature. Therefore, comparisons of observations with theoretical predictions of secular structure formation have only been conducted on small samples of visually classified galaxies. However large samples are needed to disentangle the complex physical processes of galaxy formation. With the advent of large surveys, like the Sloan Digital Sky Survey (SDSS) and the upcoming Large Synoptic Survey Telescope (LSST) and WFIRST, the problem of statistics will be resolved. However, the need for a robust quantitative classification scheme will still remain. Here I will present early results on promising machine learning algorithms that are providing detailed classifications, identifying bars, rings, multi-armed spiral galaxies, and Hubble type.

Xenia: A Probe of Cosmic Chemical Evolution

NASA Astrophysics Data System (ADS)

Kouveliotou, Chryssa; Piro, L.; Xenia Collaboration

2008-03-01

Xenia is a concept study for a medium-size astrophysical cosmology mission addressing the Cosmic Origins key objective of NASA's Science Plan. The fundamental goal of this objective is to understand the formation and evolution of structures on various scales from the early Universe to the present time (stars, galaxies and the cosmic web). Xenia will use X-and γ-ray monitoring and wide field X-ray imaging and high-resolution spectroscopy to collect essential information from three major tracers of these cosmic structures: the Warm Hot Intergalactic Medium (WHIM), Galaxy Clusters and Gamma Ray Bursts (GRBs). Our goal is to trace the chemo-dynamical history of the ubiquitous warm hot diffuse baryon component in the Universe residing in cosmic filaments and clusters of galaxies up to its formation epoch (at z =0-2) and to map star formation and galaxy metal enrichment into the re-ionization era beyond z 6. The concept of Xenia (Greek for "hospitality") evolved in parallel with the Explorer of Diffuse Emission and GRB Explosions (EDGE), a mission proposed by a multinational collaboration to the ESA Cosmic Vision 2015. Xenia incorporates the European and Japanese collaborators into a U.S. led mission that builds on the scientific objectives and technological readiness of EDGE.

ARL2BP, a protein linked to Retinitis Pigmentosa, is needed for normal photoreceptor cilia doublets and outer segment structure.

PubMed

Moye, Abigail R; Singh, Ratnesh; Kimler, Victoria A; Dilan, Tanya L; Munezero, Daniella; Saravanan, Thamaraiselvi; Goldberg, Andrew F X; Ramamurthy, Visvanathan

2018-05-02

The outer segment (OS) of photoreceptor cells is an elaboration of a primary cilium with organized stacks of membranous discs that contain the proteins needed for phototransduction and vision. Though cilia formation and function has been well characterized, little is known about the role of cilia in the development of photoreceptor OS. Nevertheless, progress has been made by studying mutations in ciliary proteins which often result in malformed outer segments and lead to blinding diseases. To investigate how ciliary proteins contribute to outer segment formation, we generated a knockout mouse model for ARL2BP, a ciliary protein linked to Retinitis Pigmentosa. The knockout mice display an early and progressive reduction in visual response. Prior to photoreceptor degeneration we observed disorganization of the photoreceptor OS, with vertically aligned discs and shortened axonemes. Interestingly, ciliary doublet microtubule structure was also impaired, displaying open B-tubule doublets, paired with loss of singlet microtubules. Based on results from this study, we conclude that ARL2BP is necessary for photoreceptor cilia doublet formation and axoneme elongation, which is required for outer segment morphogenesis and vision.

Following iron speciation in the early stages of magnetite magnetosome biomineralization

DOE PAGES

Firlar, Emre; Perez-Gonzalez, Teresa; Olszewska, Agata; ...

2016-02-26

Understanding magnetosome magnetite biomineralization is of fundamental interest to devising the strategies for bioinspired synthesis of magnetic materials at the nanoscale. Thus, we investigated the early stages of magnetosome formation in this work and correlated the size and emergent crystallinity of magnetosome nanoparticles with the changes in chemical environment of iron and oxygen by utilizing advanced analytical electron microscopy techniques. We observed that magnetosomes in the early stages of biomineralization with the sizes of 5–10 nm were amorphous, with a majority of iron present as Fe 3+, indicative of ferric hydroxide. The magnetosomes with intermediate sizes showed partially crystalline structuremore » with a majority of iron present as Fe 3+ and trace amounts of Fe 2+. The fully maturated magnetosomes were indexed to magnetite. Furthermore, our approach provides spatially resolved structural and chemical information of individual magnetosomes with different particle sizes, attributed to magnetosomes at different stages of biomineralization.« less

Simulations of Early Structure Formation: Primordial Gas Clouds

NASA Astrophysics Data System (ADS)

Yoshida, Naoki; Abel, Tom; Hernquist, Lars; Sugiyama, Naoshi

2003-08-01

We use cosmological simulations to study the origin of primordial star-forming clouds in a ΛCDM universe, by following the formation of dark matter halos and the cooling of gas within them. To model the physics of chemically pristine gas, we employ a nonequilibrium treatment of the chemistry of nine species (e-, H, H+, He, He+, He++, H2, H+2, H-) and include cooling by molecular hydrogen. By considering cosmological volumes, we are able to study the statistical properties of primordial halos, and the high resolution of our simulations enables us to examine these objects in detail. In particular, we explore the hierarchical growth of bound structures forming at redshifts z~25-30 with total masses in the range ~105-106Msolar. We find that when the amount of molecular hydrogen in these objects reaches a critical level, cooling by rotational line emission is efficient, and dense clumps of cold gas form. We identify these ``gas clouds'' as sites for primordial star formation. In our simulations, the threshold for gas cloud formation by molecular cooling corresponds to a critical halo mass of ~5×105h-1Msolar, in agreement with earlier estimates, but with a weak dependence on redshift in the range z>16. The complex interplay between the gravitational formation of dark halos and the thermodynamic and chemical evolution of the gas clouds compromises analytic estimates of the critical H2 fraction. Dynamical heating from mass accretion and mergers opposes relatively inefficient cooling by molecular hydrogen, delaying the production of star-forming clouds in rapidly growing halos. We also investigate the effect of photodissociating ultraviolet radiation on the formation of primordial gas clouds. We consider two extreme cases, first by including a uniform radiation field in the optically thin limit and second by accounting for the maximum effect of gas self-shielding in virialized regions. For radiation with Lyman-Werner band flux J>10-23 ergs s-1 cm-2 Hz-1 sr-1, hydrogen molecules are rapidly dissociated, rendering gas cooling inefficient. In both the cases we consider, the overall effect can be described by computing an equilibrium H2 abundance for the radiation flux and defining an effective shielding factor. Based on our numerical results, we develop a semianalytic model of the formation of the first stars and demonstrate how it can be coupled with large N-body simulations to predict the star formation rate in the early universe.

Structural evolution of the Mount Wall region in the Hamersley province, Western Australia and its control on hydrothermal alteration and formation of high-grade iron deposits

NASA Astrophysics Data System (ADS)

Dalstra, Hilke J.

2014-10-01

The discovery of two relatively small but high-grade iron ore deposits near Mt Wall, an intensely faulted part of the southwestern Hamersley province provides unique insights into the structural control on ore formation in this region. The deposits have many geological features typical of the high grade microplaty hematite group which also contains the much larger Mt Tom Price, Paraburdoo and Mt Whaleback deposits. The deposits are structurally controlled along early normal faults and contain abundant microplaty hematite and martite, and are largely confined to the Dales Gorge member of the Brockman Iron Formation. In addition to the microplaty hematite-martite ore, there are martite-goethite ores and rare magnetite-goethite or magnetite-hematite ores. Below the modern weathering surface, hydrothermally altered zones in wallrock BIF from the Lower Dales Gorge member contain magnetite, hematite and carbonate/talc bearing mineral assemblages. A staged ore genesis model involving early extension and fluid circulation along normal faults, hypogene silica leaching and carbonate alteration, followed by deep meteoric oxidation with microplaty hematite formation and finally weathering can explain most features of the Mt Wall deposits. The role of deformation was to provide pathways for mineralising fluids and initiate the seed points for the mineralised systems. High grade iron in the Wellthandalthaluna deposit is situated between the NW to NNW trending Boolgeeda Creek fault and a synthetic joining splay, the Northern fault. Both are high angle normal faults and formed during early extension in this part of the province. Faults are characterised by localised small scale deformation and brecciation, deep carbonate alteration and oxidation. Recent weathering has penetrated deeply into the fault zones, converting the carbonate-rich assemblages into goethite. Mineralisation in the Arochar deposit is situated in the overlap or relay zone between two segments of the Mt Wall fault zone, a moderately to steeply southerly dipping normal fault system which at Arochar is intruded by dolerite dykes. At both locations, the ore controlling faults are offset by later NW trending dextral and normal faults. Fault relay zones or fault splay zones were likely zones of increased permeability and fluid flow during fault development or reactivation and may also have been important in initiating mineralisation in larger deposits such as Mt Tom Price and Mt Whaleback. However structural controls on the largest iron ore deposits are often obscured due to the intensity and scale of ore development, whereas they are better preserved in the smaller deposits. Recognition that carbonate bearing protores at Mt Wall survived for nearly two billion years until intense recent weathering converted them to martite-goethite or magnetite-goethite ores may imply that more of the giant hematite-goethite deposits of the Hamersley province had hydrothermal precursors and were not formed by supergene processes alone.

A novel method for reducing gap formation in tendon repair.

PubMed

Dean, Ryan; Sethi, Paul

2018-03-01

This study investigates gap formation in tendon repair using a novel tensioning method. The novel stitch will demonstrate less gap formation than the other suture configurations tested. Porcine tendons stitched with classic Krackow stitch configurations were compared to a Krackow stitch modified with a proximal Tension-Assist Loop. Each group was cyclically loaded followed by analysis of the tendon-suture construct for gap formation. The Tension-Assist Loop group produced significantly less gap formation than each of the other stitch groups. Decreasing early gap formation may be beneficial in allowing early rehabilitation and range of motion.

Characteristics of microbial community involved in early biofilms formation under the influence of wastewater treatment plant effluent.

PubMed

Peng, Yuke; Li, Jie; Lu, Junling; Xiao, Lin; Yang, Liuyan

2018-04-01

Effluents from wastewater treatment plants (WWTPs) containing microorganisms and residual nutrients can influence the biofilm formation. Although the process and mechanism of bacterial biofilm formation have been well characterized, little is known about the characteristics and interaction of bacteria, archaea and eukaryotes in the early colonization, especially under the influence of WWTP effluent. The aim of this study was to characterize the important bacterial, archaeal and eukaryotic species in the early stage of biofilm formation downstream of the WWTP outlet. Water and biofilm samples were collected 24 and 48hr after the deposition of bio-cords in the stream. Illumina Miseq sequencing of the 16S and 18S rDNA showed that, among the three domains, the bacterial biofilm community had the largest alpha and beta diversity. The early bacterial colonizers appeared to be "biofilm-specific", with only a few dominant operational taxonomic units (OTUs) shared between the biofilm and the ambient water environment. Alpha-proteobacteria and Ciliophora tended to dominate the bacterial and eukaryotic communities, respectively, of the early biofilm already at 24hr, whereas archaea played only a minor role during the early stage of colonization. The network analysis showed that the three domains of microbial community connected highly during the early colonization and it might be a characteristic of the microbial communities in the biofilm formation process where co-occurrence relationships could drive coexistence and diversity maintenance within the microbial communities. Copyright © 2017. Published by Elsevier B.V.

The role of Mesozoic sedimentary basin tapers on the formation of Cenozoic crustal shortening structures and foredeep in the western Sichuan Basin, China

NASA Astrophysics Data System (ADS)

Wang, M.

2017-12-01

The foreland basin records important clues of tectonic and sedimentary process of mountain-building, thus to explore its dynamic mechanism on the formation is an important issue of the mountain-basin interaction. The Longmen Shan fold-and-thrust belt and its adjacent Sichuan basin located in the eastern margin of Tibetan Plateau, are one of the most-concerned regions of studying modern mountain-building and seismic process, and are also a natural laboratory of studying the dynamics of the formation and development of foreland basin. However, it still need further explore on the mechanics of the development of the Cenozoic foreland basin and thrust-belts in the western Sichuan Basin. The Longmen Shan thrust belt has experienced multi-stages of tectonics evolution, foreland basin formation and topography growth since Late Triassic, and whether the early formed basin architecture and large Mesozoic sedimentary basin taper can influence the formation and development of the Cenozoic foreland basin and thrust belts? To solve these issues, this project aim to focus on the Cenozoic foreland basin and internal crustal shortening structures in the western Sichuan basin, on the basis of growth critical wedge taper theory. We will reconstruct the shape of multi-phases of sedimentary basin tapers, the temporal-spatial distribution of crustal shortening and thrusting sequences, and analyze the control mechanism of Mesozoic sedimentary basin taper on the formation of Cenozoic foreland basins, and final explore the interaction between the tectonics geomorphology, stress field and dynamic propagation of foreland basin.

Connective Tissue Growth Factor Is Involved in Structural Retinal Vascular Changes in Long-Term Experimental Diabetes

PubMed Central

Van Geest, Rob J.; Leeuwis, Jan Willem; Dendooven, Amélie; Pfister, Frederick; Bosch, Klazien; Hoeben, Kees A.; Vogels, Ilse M.C.; Van der Giezen, Dionne M.; Dietrich, Nadine; Hammes, Hans-Peter; Goldschmeding, Roel; Klaassen, Ingeborg; Van Noorden, Cornelis J.F.

2014-01-01

Early retinal vascular changes in the development of diabetic retinopathy (DR) include capillary basal lamina (BL) thickening, pericyte loss and the development of acellular capillaries. Expression of the CCN (connective tissue growth factor/cysteine-rich 61/nephroblastoma overexpressed) family member CCN2 or connective tissue growth factor (CTGF), a potent inducer of the expression of BL components, is upregulated early in diabetes. Diabetic mice lacking one functional CTGF allele (CTGF+/−) do not show this BL thickening. As early events in DR may be interrelated, we hypothesized that CTGF plays a role in the pathological changes of retinal capillaries other than BL thickening. We studied the effects of long-term (6-8 months) streptozotocin-induced diabetes on retinal capillary BL thickness, numbers of pericytes and the development of acellular capillaries in wild type and CTGF+/− mice. Our results show that an absence of BL thickening of retinal capillaries in long-term diabetic CTGF+/− mice is associated with reduced pericyte dropout and reduced formation of acellular capillaries. We conclude that CTGF is involved in structural retinal vascular changes in diabetic rodents. Inhibition of CTGF in the eye may therefore be protective against the development of DR. PMID:24217924

Molecular analysis of NOZZLE, a gene involved in pattern formation and early sporogenesis during sex organ development in Arabidopsis thaliana

PubMed Central

Schiefthaler, Ursula; Balasubramanian, Sureshkumar; Sieber, Patrick; Chevalier, David; Wisman, Ellen; Schneitz, Kay

1999-01-01

Sexual reproduction is a salient aspect of plants, and elaborate structures, such as the flowers of angiosperms, have evolved that aid in this process. Within the flower the corresponding sex organs, the anther and the ovule, form the male and female sporangia, the pollen sac and the nucellus, respectively. However, despite their central role for sexual reproduction little is known about the mechanisms that control the establishment of these important structures. Here we present the identification and molecular characterization of the NOZZLE (NZZ) gene in the flowering plant Arabidopsis thaliana. In several nzz mutants the nucellus and the pollen sac fail to form. It indicates that NZZ plays an early and central role in the development of both types of sporangia and that the mechanisms controlling these processes share a crucial factor. In addition, NZZ may have an early function during male and female sporogenesis as well. The evolutionary aspects of these findings are discussed. NZZ encodes a putative protein of unknown function. However, based on sequence analysis we speculate that NZZ is a nuclear protein and possibly a transcription factor. PMID:10500234

The light up and early evolution of high redshift Supermassive Black Holes

NASA Astrophysics Data System (ADS)

Comastri, Andrea; Brusa, Marcella; Aird, James; Lanzuisi, Giorgio

2016-07-01

The known AGN population at z > 6 is made by luminous optical QSO hosting Supermassive Black Holes (M > 10 ^{9}solar masses), likely to represent the tip of the iceberg of the luminosity and mass function. According to theoretical models for structure formation, Massive Black Holes (M _{BH} 10^{4-7} solar masses) are predicted to be abundant in the early Universe (z > 6). The majority of these lower luminosity objects are expected to be obscured and severely underepresented in current optical near-infrared surveys. The detection of such a population would provide unique constraints on the Massive Black Holes formation mechanism and subsequent growth and is within the capabilities of deep and large area ATHENA surveys. After a summary of the state of the art of present deep XMM and Chandra surveys, at z >3-6 also mentioning the expectations for the forthcoming eROSITA all sky survey; I will present the observational strategy of future multi-cone ATHENA Wide Field Imager (WFI) surveys and the expected breakthroughs in the determination of the luminosity function and its evolution at high (> 4) and very high (>6) redshifts.

Formation Mechanism of CuAlO2 Prepared by Rapid Thermal Annealing of Al2O3/Cu2O/Sapphire Sandwich Structure

NASA Astrophysics Data System (ADS)

Shih, C. H.; Tseng, B. H.

Single-phase CuAlO2 films were successfully prepared by thin-film reaction of an Al2O3/Cu2O/sapphire sandwich structure. We found that the processing parameters, such as heating rate, holding temperature and annealing ambient, were all crucial to form CuAlO2 without second phases. Thermal annealing in pure oxygen ambient with a lower temperature ramp rate might result in the formation of CuAl2O4 in addition to CuAlO2, since part of Cu2O was oxidized to form CuO and caused the change in reaction path, i.e. CuO + Al2O3 → CuAl2O4. Typical annealing conditions successful to prepare single-phase CuAlO2 would be to heat the sample with a temperature rampt rate higher than 7.3 °C/sec and hold the temperature at 1100 °C in air ambient. The formation mechanism of CuAlO2 has also been studied by interrupting the reaction after a short period of annealing. TEM observations showed that the top Al2O3 layer with amorphous structure reacted immediately with Cu2O to form CuAlO2 in the early stage and then the remaining Cu2O reacted with the sapphire substrate.

Stratigraphy and structure of the Miners Mountain area, Wayne County, Utah

USGS Publications Warehouse

Luedke, Robert G.

1953-01-01

The Miners Mountain area includes about 85 square miles in Wayne County, south-central Utah. The area is semiarid and characterized by cliffs and deep canyons. Formations range in age from Permian to Upper Jurassic and have an aggregate thickness of about 3,500 feet. Permian formations are the buff Coconino sandstone and the overlying white, limy, shert-containing Kaibab limestone. Unconformably overlying the Kaihab is the lower Triassic Moenkopi formation of reddish-brown and yellow mudstone, siltstone, and sandstone; it contains the Sinbad limestone member (?) in the lower part. Thin, lenticular Shinarump conglomerate unconformably overlies the Moenkopi, but grades upward into the Upper Triassic Chinle formation of variegated mudstone with some interbedded sandstone and limestone lenses. Uncomformably overlying the Chinle are the Wingate sandstone, Kayenta formation, and Navajo sandstone of the Jurassic (?) Glen Canyon group, which consist of red to white sandstone. Only the lower part of the Carmel formation of the Upper Jurassic San Rafael group is exposed in the area; it consists of variegated siltstone, sandstone, limestone, and gypsum. The conspicuous structural feature in the area is the Teasdale anticline which trends northwest, is about 14 miles long, and is asymmetric with a steeper west flank. Bounding the anticline on the northeast and east is the Capitol Reef monocline, the northern part of the Waterpocket Fold. Strata in the area are broken by steeply-dipping normal faults with small displacements, except for the Teasdale fault which has a maximum displacement of over 1,000 feet. Jointing is prominent in some formations. The major orogenic movement in the area is believed to be late Upper Cretaceous to early Tertiary. Epeirogenic uplift occurred intermittently throughout Tertiary and perhaps Quaternary time.

Origin and hydrology of a large, intact Early Cambrian paleocave system and its role in overlying fluidisation structures, Arctic Canada

NASA Astrophysics Data System (ADS)

Mathieu, Jordan; Turner, Elizabeth C.; Rainbird, Robert H.

2017-04-01

Paleokarst is most commonly expressed as subtle stratigraphic surfaces rather than large void systems penetrating deeply into the paleo-subsurface. In contrast, a regional Precambrian-Cambrian unconformity on Victoria Island (NWT, Canada), is associated with exceptional exposure of large, intact Cambrian paleocaverns (100 m diameter; tens of m high). The paleocaves are distributed along a paleo-horizontal plane, and an associated gryke network is present in the 30-60 m of Neoproterozoic dolostone between cave rooves and the base of overlying Cambrian sandstone; both are filled by Cambrian sandstone. The formation and preservation of such karst features require aggressive dissolution along a stable paleo-water-table shortly before transgression and deposition of shallow-marine sand over the dolostone. During the transgression, the karst network acted as a conduit for flowing groundwater that was discharged through overlying, unconsolidated Cambrian shallow-marine sand, producing water-escape structures (sand volcanoes and their conduits). The conduits are preserved as cylindrical remnants of the sand volcanoes' feeder pipes. Sediment fluidisation was probably caused by variations in the hydraulic-head gradient in a meteoric lens near the Cambrian coastline under a tropical climate with abundant, probably seasonally variable rainfall that caused pulses in subsurface fluid flow. Spatial distribution of the paleocaves and sand volcanoes suggests their formation on the southeast side of a recently faulted horst of Proterozoic carbonate bedrock that formed a nearshore island during early Cambrian sea-level rise. Fluidisation structures such as those reported here have generally been difficult to interpret owing to a lack of data on the fluid hydraulics of the underlying aquifer. This is the first report linking the hydraulics of a well-characterised paleokarst to development of fluid-escape structures. Such structures are widely known from sandstones overlying the sub-Cambrian unconformity around the circumference of Laurentia.

The Role of Microbial Iron Reduction in the Formation of Proterozoic Molar Tooth Structures

NASA Astrophysics Data System (ADS)

Hodgskiss, M. S. W.; Kunzmann, M.; Halverson, G. P.; Poirier, A.

2016-12-01

Molar tooth structures are poorly understood early diagenetic, microspar-filled voids in clay-rich carbonate sediments. They are a common structure in sedimentary successions dating from 2600-720 Ma, but do not occur in rocks older or younger. Despite being volumetrically significant in carbonate rocks of this age, their formation and disappearance are poorly understood. Here, we present iron isotope data, supported by carbon and oxygen isotopes, major and minor element concentrations, and total organic carbon and pyrite contents for samples from ten regions spanning 1870-635 Ma. The iron isotopic composition of molar tooth structures is almost always lighter (modal depletion of 2‰) than the carbonate or siliciclastic components in the host sediment, whereas carbon isotopes are indistinguishable. We interpret the isotopically light iron in molar tooth structures to have been produced by microbial iron reduction utilising Fe-oxyhydroxides and smectites. The microbial conversion of smectite to illite results in a volume reduction of clay minerals ( 30%), while locally increasing pore water alkalinity. Therefore, this biogeochemical process is a viable mechanism to produce voids and subsequently precipitate carbonate minerals. The disappearance of molar tooth structures is likely linked to a combination of a decrease in smectite abundance, a decline in the marine DIC reservoir, and increase in the concentration of O2 in shallow seawater in the mid-Neoproterozoic.

The Intestinal Microbiome in Early Life: Health and Disease

PubMed Central

Arrieta, Marie-Claire; Stiemsma, Leah T.; Amenyogbe, Nelly; Brown, Eric M.; Finlay, Brett

2014-01-01

Human microbial colonization begins at birth and continues to develop and modulate in species abundance for about 3 years, until the microbiota becomes adult-like. During the same time period, children experience significant developmental changes that influence their health status as well as their immune system. An ever-expanding number of articles associate several diseases with early-life imbalances of the gut microbiota, also referred to as gut microbial dysbiosis. Whether early-life dysbiosis precedes and plays a role in disease pathogenesis, or simply originates from the disease process itself is a question that is beginning to be answered in a few diseases, including IBD, obesity, and asthma. This review describes the gut microbiome structure and function during the formative first years of life, as well as the environmental factors that determine its composition. It also aims to discuss the recent advances in understanding the role of the early-life gut microbiota in the development of immune-mediated, metabolic, and neurological diseases. A greater understanding of how the early-life gut microbiota impacts our immune development could potentially lead to novel microbial-derived therapies that target disease prevention at an early age. PMID:25250028

The Probe of Inflation and Cosmic Origins

NASA Astrophysics Data System (ADS)

Hanany, Shaul; Inflation Probe Mission Study Team

2018-01-01

The Probe of Inflation and Cosmic Origins will map the polarization of the cosmic microwave background over the entire sky with unprecedented sensitivity. It will search for gravity wave signals from the inflationary epoch, thus probing quantum gravity and constraining the energy scale of inflation; it will test the standard model of particle physics by measuring the number of light particles in the Universe and the mass of the neutrino; it will elucidate the nature of dark matter and search for new forms of matter in the early Universe; it will constrain star formation history over cosmic time; and it will determine the mechanisms of structure formation from galaxy cluster to stellar scales. I will review the status of design of this probe-scale mission.

Different weathering stages indicated by the magnetization of limestones: An example from the southeast Pyrenees, Spain

NASA Astrophysics Data System (ADS)

Keller, P.; Gehring, A. U.

1992-06-01

Paleomagnetic and structural data from the Pedraforca thrust sheet in the southeast Pyrenees show that the chemical weathering of the late Cretaceous limestones is a multistage process. The first weathering stage, of latest Eocene to early Oligocene age, is indicated by a chemical remanent magnetization carried by hematite. The formation of hematite as the dominant weathering product suggests a subtropical climate in northeast Spain during this period. The second weathering stage is indicated by the presence of goethite, which carries a chemical remanent magnetization parallel to the present earth field. This suggests formation of the goethite since the late Pleistocene under cooler climatic conditions similar to the present-day climate in the Pyrenees.

Is It All about Money? Work Characteristics and Women's and Men's Marriage Formation in Early Adulthood.

PubMed

Kuo, Janet Chen-Lan; Raley, R Kelly

2016-06-01

Using data from the NLSY 97, this paper investigates how work characteristics (earnings and autonomy) shape young adults' transition to first marriage separately for men and women. The results suggest that earnings are positively associated with marriage and that this association is as strong for women as men in their mid-to-late twenties. Additionally, occupational autonomy-having the control over one's own work structure-facilitates entry into first marriage for women in their mid-to late-20s but, for men, occupational autonomy is not associated with marriage at these ages. These results suggest that even as women's earnings are increasingly important for marriage, other aspects of work are also important for stable family formation.

Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci

PubMed Central

2014-01-01

Background A Xist RNA decorated Barr body is the structural hallmark of the compacted inactive X territory in female mammals. Using super-resolution three-dimensional structured illumination microscopy (3D-SIM) and quantitative image analysis, we compared its ultrastructure with active chromosome territories (CTs) in human and mouse somatic cells, and explored the spatio-temporal process of Barr body formation at onset of inactivation in early differentiating mouse embryonic stem cells (ESCs). Results We demonstrate that all CTs are composed of structurally linked chromatin domain clusters (CDCs). In active CTs the periphery of CDCs harbors low-density chromatin enriched with transcriptionally competent markers, called the perichromatin region (PR). The PR borders on a contiguous channel system, the interchromatin compartment (IC), which starts at nuclear pores and pervades CTs. We propose that the PR and macromolecular complexes in IC channels together form the transcriptionally permissive active nuclear compartment (ANC). The Barr body differs from active CTs by a partially collapsed ANC with CDCs coming significantly closer together, although a rudimentary IC channel system connected to nuclear pores is maintained. Distinct Xist RNA foci, closely adjacent to the nuclear matrix scaffold attachment factor-A (SAF-A) localize throughout Xi along the rudimentary ANC. In early differentiating ESCs initial Xist RNA spreading precedes Barr body formation, which occurs concurrent with the subsequent exclusion of RNA polymerase II (RNAP II). Induction of a transgenic autosomal Xist RNA in a male ESC triggers the formation of an ‘autosomal Barr body’ with less compacted chromatin and incomplete RNAP II exclusion. Conclusions 3D-SIM provides experimental evidence for profound differences between the functional architecture of transcriptionally active CTs and the Barr body. Basic structural features of CT organization such as CDCs and IC channels are however still recognized, arguing against a uniform compaction of the Barr body at the nucleosome level. The localization of distinct Xist RNA foci at boundaries of the rudimentary ANC may be considered as snap-shots of a dynamic interaction with silenced genes. Enrichment of SAF-A within Xi territories and its close spatial association with Xist RNA suggests their cooperative function for structural organization of Xi. PMID:25057298

Supersonic gas streams enhance the formation of massive black holes in the early universe.

PubMed

Hirano, Shingo; Hosokawa, Takashi; Yoshida, Naoki; Kuiper, Rolf

2017-09-29

The origin of super-massive black holes in the early universe remains poorly understood. Gravitational collapse of a massive primordial gas cloud is a promising initial process, but theoretical studies have difficulty growing the black hole fast enough. We report numerical simulations of early black hole formation starting from realistic cosmological conditions. Supersonic gas motions left over from the Big Bang prevent early gas cloud formation until rapid gas condensation is triggered in a protogalactic halo. A protostar is formed in the dense, turbulent gas cloud, and it grows by sporadic mass accretion until it acquires 34,000 solar masses. The massive star ends its life with a catastrophic collapse to leave a black hole-a promising seed for the formation of a monstrous black hole. Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Early Miocene benthic foraminifera and biostratigraphy of the Qom Formation, Deh Namak, Central Iran

NASA Astrophysics Data System (ADS)

Daneshian, Jahanbakhsh; Dana, Leila Ramezani

2007-03-01

A total of 165 samples were collected from the Qom Formation investigated in a stratigraphic section north of Deh Namak, in Central Iran. From these, 35 genera and 47 species of benthic foraminifera were identified. The age of the studied section is Early Miocene (Aquitanian to Early Burdigalian) based on the occurrence of Borelis melo curdica, Meandropsina anahensis, Meandropsina iranica, Elphidium sp. 14, Peneroplis farsensis, and Triloculina tricarinata. The thickness of the Qom Formation is 401 m of which 161.2 m is early Burdigalian in age. Foraminiferal assemblages in the Deh Namak section are referable to the Borelis melo group- Meandropsina iranica Assemblage Zone and Miogypsinoides- Archaias-Valvulinid Assemblage Zone of [Adams, T.D., Bourgeois, F., 1967. Asmari biostratigraphy. Iranian Oil Operating Companies, Geological and Exploration Division, Report1074 (unpublished) 1-37.] described originally from the Asmari Formation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

König, Johannes; Merle, Alexander; Totzauer, Maximilian

We investigate the early Universe production of sterile neutrino Dark Matter by the decays of singlet scalars. All previous studies applied simplifying assumptions and/or studied the process only on the level of number densities, which makes it impossible to give statements about cosmic structure formation. We overcome these issues by dropping all simplifying assumptions (except for one we showed earlier to work perfectly) and by computing the full course of Dark Matter production on the level of non-thermal momentum distribution functions. We are thus in the position to study a broad range of aspects of the resulting settings and applymore » a broad set of bounds in a reliable manner. We have a particular focus on how to incorporate bounds from structure formation on the level of the linear power spectrum, since the simplistic estimate using the free-streaming horizon clearly fails for highly non-thermal distributions. Our work comprises the most detailed and comprehensive study of sterile neutrino Dark Matter production by scalar decays presented so far.« less

The development of computer networks: First results from a microeconomic model

NASA Astrophysics Data System (ADS)

Maier, Gunther; Kaufmann, Alexander

Computer networks like the Internet are gaining importance in social and economic life. The accelerating pace of the adoption of network technologies for business purposes is a rather recent phenomenon. Many applications are still in the early, sometimes even experimental, phase. Nevertheless, it seems to be certain that networks will change the socioeconomic structures we know today. This is the background for our special interest in the development of networks, in the role of spatial factors influencing the formation of networks, and consequences of networks on spatial structures, and in the role of externalities. This paper discusses a simple economic model - based on a microeconomic calculus - that incorporates the main factors that generate the growth of computer networks. The paper provides analytic results about the generation of computer networks. The paper discusses (1) under what conditions economic factors will initiate the process of network formation, (2) the relationship between individual and social evaluation, and (3) the efficiency of a network that is generated based on economic mechanisms.

Structure-Activity Relationships of 6- and 8-Gingerol Analogs as Anti-Biofilm Agents.

PubMed

Choi, Hyunsuk; Ham, So-Young; Cha, Eunji; Shin, Yujin; Kim, Han-Shin; Bang, Jeong Kyu; Son, Sang-Hyun; Park, Hee-Deung; Byun, Youngjoo

2017-12-14

Pseudomonas aeruginosa is a causative agent of chronic infections in immunocompromised patients. Disruption of quorum sensing circuits is an attractive strategy for treating diseases associated with P. aeruginosa infection. In this study, we designed and synthesized a series of gingerol analogs targeting LasR, a master regulator of quorum sensing networks in P. aeruginosa. Structure-activity relationship studies showed that a hydrogen-bonding interaction in the head section, stereochemistry and rotational rigidity in the middle section, and optimal alkyl chain length in the tail section are important factors for the enhancement of LasR-binding affinity and for the inhibition of biofilm formation. The most potent compound 41, an analog of (R)-8-gingerol with restricted rotation, showed stronger LasR-binding affinity and inhibition of biofilm formation than the known LasR antagonist (S)-6-gingerol. This new LasR antagonist can be used as an early lead compound for the development of anti-biofilm agents to treat P. aeruginosa infections.

Early stage of plastic deformation in thin films undergoing electromigration

NASA Astrophysics Data System (ADS)

Valek, B. C.; Tamura, N.; Spolenak, R.; Caldwell, W. A.; MacDowell, A. A.; Celestre, R. S.; Padmore, H. A.; Bravman, J. C.; Batterman, B. W.; Nix, W. D.; Patel, J. R.

2003-09-01

Electromigration occurs when a high current density drives atomic motion from the cathode to the anode end of a conductor, such as a metal interconnect line in an integrated circuit. While electromigration eventually causes macroscopic damage, in the form of voids and hillocks, the earliest stage of the process when the stress in individual micron-sized grains is still building up is largely unexplored. Using synchrotron-based x-ray microdiffraction during an in-situ electromigration experiment, we have discovered an early prefailure mode of plastic deformation involving preferential dislocation generation and motion and the formation of a subgrain structure within individual grains of a passivated Al (Cu) interconnect. This behavior occurs long before macroscopic damage (hillocks and voids) is observed.

The charophytes-rich Barremian-Albian record in Jebel Ksaïra (Central Tunisia)

NASA Astrophysics Data System (ADS)

Salmouna, Amal; Cojan, Isabelle; Touir, Jamel

2017-06-01

On the southern margin of the Tethys, Early Cretaceous sediments cover most of the Central Tunisia. As a result of a Middle Cretaceous sub-aerial exposure, the Late Barremian -Early Albian interval is mainly characterized by a major stratigraphic gap (hiatus). However in the Sidi Bouzid area a continental succession has been deposited called ;Kebar Formation;. The Kebar Formation was previously studied in Jebel Kebar and Jebel Koumine and attributed respectively to the Late Aptian-Early Albian and the Late Barremian- Early Albian intervals. In the Jebel Ksaïra area, located at the East of Sidi Bouzid area and 4 km East of the Jebel Kebar, the Kebar Formation includes a rich association of charophytes that allows us to assign this Formation to the Late Barremian -Early Albian. Therefore, the Kebar Formation should have been deposited in Jebel Ksaïra earlier than in Jebel Kebar. The vertical stacking pattern and facies association of the Kebar Formation in the Jebel Ksaïra locality reflect variable depositional settings ranging from palustrine to marginal marine and infratidal environments. In fact, the sedimentary deposition in Jebel Ksaïra area was cyclic, alternating between (i) continental deposition materialized by bedded limestones rich in charophytes and limnic ostracods and (ii) marginal marine to infratidal deposition receiving episodically conglomerate inputs related to recurrent halokinetic activity (diapir of Jebel Rheouis).

Evidence for Dynamically Driven Formation of the GW170817 Neutron Star Binary in NGC 4993

DOE Office of Scientific and Technical Information (OSTI.GOV)

Palmese, A.; et al.

2017-11-09

We present a study of NGC 4993, the host galaxy of the GW170817 gravitational wave event, the GRB170817A short gamma-ray burst (sGRB) and the AT2017gfo kilonova. We use Dark Energy Camera imaging, AAT spectra and publicly available data, relating our findings to binary neutron star (BNS) formation scenarios and merger delay timescales. NGC4993 is a nearby (40 Mpc) early-type galaxy, withmore » $i$$-band S\\'ersic index $$n=4.0$ and low asymmetry ($$A=0.04\\pm 0.01$$). These properties are unusual for sGRB hosts. However, NGC4993 presents shell-like structures and dust lanes indicative of a recent galaxy merger, with the optical transient located close to a shell. We constrain the star formation history (SFH) of the galaxy assuming that the galaxy merger produced a star formation burst, but find little to no on-going star formation in either spatially-resolved broadband SED or spectral fitting. We use the best-fit SFH to estimate the BNS merger rate in this type of galaxy, as $$R_{NSM}^{gal}= 5.7^{+0.57}_{-3.3} \\times 10^{-6} {\\rm yr}^{-1}$$. If star formation is the only considered BNS formation scenario, the expected number of BNS mergers from early-type galaxies detectable with LIGO during its first two observing seasons is $$0.038^{+0.004}_{-0.022}$$, as opposed to $$\\sim 0.5$$ from all galaxy types. Hypothesizing that the binary system formed due to dynamical interactions during the galaxy merger, the subsequent time elapsed can constrain the delay time of the BNS coalescence. By using velocity dispersion estimates and the position of the shells, we find that the galaxy merger occurred $$t_{\\rm mer}\\lesssim 200~{\\rm Myr}$$ prior to the BNS coalescence.« less

Adolescent Violent Victimization and Precocious Union Formation*

PubMed Central

C. Kuhl, Danielle; Warner, David F.; Wilczak, Andrew

2013-01-01

This article bridges scholarship in criminology and family sociology by extending arguments about “precocious exits” from adolescence to consider early union formation as a salient outcome of violent victimization for youths. Research indicates that early union formation is associated with several negative outcomes; yet the absence of attention to union formation as a consequence of violent victimization is noteworthy. We address this gap by drawing on life course theory and data from the National Longitudinal Study of Adolescent Health (Add Health) to examine the effect of violent victimization (“street” violence) on the timing of first co-residential union formation—differentiating between marriage and cohabitation—in young adulthood. Estimates from Cox proportional hazard models show that adolescent victims of street violence experience higher rates of first union formation, especially marriage, early in the transition to adulthood; however, this effect declines with age, as such unions become more normative. Importantly, the effect of violent victimization on first union timing is robust to controls for nonviolent delinquency, substance abuse, and violent perpetration. We conclude by discussing directions for future research on the association between violent victimization and coresidential unions with an eye toward the implications of such early union formation for desistance. PMID:24431471

Pliocene transpressional modification of depositional basins by convergent thrusting adjacent to the "Big Bend" of the San Andreas fault: An example from Lockwood Valley, southern California

USGS Publications Warehouse

Kellogg, K.S.; Minor, S.A.

2005-01-01

The "Big Bend" of the San Andreas fault in the western Transverse Ranges of southern California is a left stepping flexure in the dextral fault system and has long been recognized as a zone of relatively high transpression compared to adjacent regions. The Lockwood Valley region, just south of the Big Bend, underwent a profound change in early Pliocene time (???5 Ma) from basin deposition to contraction, accompanied by widespread folding and thrusting. This change followed the recently determined initiation of opening of the northern Gulf of California and movement along the southern San Andreas fault at about 6.1 Ma, with the concomitant formation of the Big Bend. Lockwood Valley occupies a 6-km-wide, fault-bounded structural basin in which converging blocks of Paleoproterozoic and Cretaceous crystalline basement and upper Oligocene and lower Miocene sedimentary rocks (Plush Ranch Formation) were thrust over Miocene and Pliocene basin-fill sedimentary rocks (in ascending order, Caliente Formation, Lockwood Clay, and Quatal Formation). All the pre-Quatal sedimentary rocks and most of the Pliocene Quatal Formation were deposited during a mid-Tertiary period of regional transtension in a crustal block that underwent little clockwise vertical-axis rotation as compared to crustal blocks to the south. Ensuing Pliocene and Quaternary transpression in the Big Bend region began during deposition of the poorly dated Quatal Formation and was marked by four converging thrust systems, which decreased the areal extent of the sedimentary basin and formed the present Lockwood Valley structural basin. None of the thrusts appears presently active. Estimated shortening across the center of the basin was about 30 percent. The fortnerly defined eastern Big Pine fault, now interpreted to be two separate, oppositely directed, contractional reverse or thrust faults, marks the northwestern structural boundary of Lockwood Valley. The complex geometry of the Lockwood Valley basin is similar to other Tertiary structural basins in southern California, such those that underlie Cuyama Valley, the Ridge basin, and the east Ventura basin.

Cosmic strings and superconducting cosmic strings

NASA Technical Reports Server (NTRS)

Copeland, Edmund

1988-01-01

The possible consequences of forming cosmic strings and superconducting cosmic strings in the early universe are discussed. Lecture 1 describes the group theoretic reasons for and the field theoretic reasons why cosmic strings can form in spontaneously broken gauge theories. Lecture 2 discusses the accretion of matter onto string loops, emphasizing the scenario with a cold dark matter dominated universe. In lecture 3 superconducting cosmic strings are discussed, as is a mechanism which leads to the formation of structure from such strings.

Computational approaches to vision

NASA Technical Reports Server (NTRS)

Barrow, H. G.; Tenenbaum, J. M.

1986-01-01

Vision is examined in terms of a computational process, and the competence, structure, and control of computer vision systems are analyzed. Theoretical and experimental data on the formation of a computer vision system are discussed. Consideration is given to early vision, the recovery of intrinsic surface characteristics, higher levels of interpretation, and system integration and control. A computational visual processing model is proposed and its architecture and operation are described. Examples of state-of-the-art vision systems, which include some of the levels of representation and processing mechanisms, are presented.

The Oldest Granites of Russia: Paleoarchean (3343 Ma) Subalkali Granites of the Okhotsk Massif

NASA Astrophysics Data System (ADS)

Kuzmin, V. K.; Bogomolov, E. S.; Glebovitskii, V. A.; Rodionov, N. V.

2018-02-01

The Paleoarchean age (3.34 Ga) of subalkali granite magmatism first established for the Kukhtui uplift of the Okhotsk Massif suggests a formation time of the mature continental K-rich crust in this region as early as the Paleoarchean. According to the geological structural, mineralogical-geochemical, geochronological, and isotopic-geochemical data, the Kukhtui uplift can be considered as the most ancient Paleoarchean province in Russia: the ancient consolidation core of the sialic protocrust of the Okhotsk-Omolon Craton.

Study of Mechanical and Thermal Impact of a Plasma Focus Discharge on Diagnostic Elements of PFM-72M Installation

NASA Astrophysics Data System (ADS)

Bashutin, O. A.; Savelov, A. S.; Sidorov, P. P.

2017-12-01

Mechanical and thermal impact of the plasma focus discharge on structural elements of diagnostic windows of the PFM-72m discharge installation are calculated. The absence of critical impact at early discharge stages and during the first 300 ns after the "plasma focus" formation is shown. The possibility of shock impact on the surface of diagnostic windows at later times, which may result in their substantial deformation and destruction, is demonstrated.

Narrative processing in typically developing children and children with early unilateral brain injury: seeing gesture matters.

PubMed

Demir, Özlem Ece; Fisher, Joan A; Goldin-Meadow, Susan; Levine, Susan C

2014-03-01

Narrative skill in kindergarteners has been shown to be a reliable predictor of later reading comprehension and school achievement. However, we know little about how to scaffold children's narrative skill. Here we examine whether the quality of kindergarten children's narrative retellings depends on the kind of narrative elicitation they are given. We asked this question with respect to typically developing (TD) kindergarten children and children with pre- or perinatal unilateral brain injury (PL), a group that has been shown to have difficulty with narrative production. We compared children's skill in retelling stories originally presented to them in 4 different elicitation formats: (a) wordless cartoons, (b) stories told by a narrator through the auditory modality, (c) stories told by a narrator through the audiovisual modality without co-speech gestures, and (e) stories told by a narrator in the audiovisual modality with co-speech gestures. We found that children told better structured narratives in response to the audiovisual + gesture elicitation format than in response to the other 3 elicitation formats, consistent with findings that co-speech gestures can scaffold other aspects of language and memory. The audiovisual + gesture elicitation format was particularly beneficial for children who had the most difficulty telling a well-structured narrative, a group that included children with larger lesions associated with cerebrovascular infarcts. PsycINFO Database Record (c) 2014 APA, all rights reserved.

COMPUTER SIMULATION STUDY OF AMYLOID FIBRIL FORMATION BY PALINDROMIC SEQUENCES IN PRION PEPTIDES

PubMed Central

Wagoner, Victoria; Cheon, Mookyung; Chang, Iksoo; Hall, Carol

2011-01-01

We simulate the aggregation of large systems containing palindromic peptides from the Syrian hamster prion protein SHaPrP 113–120 (AGAAAAGA) and the mouse prion protein MoPrP 111–120 (VAGAAAAGAV) and eight sequence variations: GAAAAAAG, (AG)4, A8, GAAAGAAA, A10, V10, GAVAAAAVAG, and VAVAAAAVAV The first two peptides are thought to act as the Velcro that holds the parent prion proteins together in amyloid structures and can form fibrils themselves. Kinetic events along the fibrillization pathway influence the types of structures that occur and variations in the sequence affect aggregation kinetics and fibrillar structure. Discontinuous molecular dynamics simulations using the PRIME20 force field are performed on systems containing 48 peptides starting from a random coil configuration. Depending on the sequence, fibrillar structures form spontaneously over a range of temperatures, below which amorphous aggregates form and above which no aggregation occurs. AGAAAAGA forms well organized fibrillar structures whereas VAGAAAAGAV forms less well organized structures that are partially fibrillar and partially amorphous. The degree of order in the fibrillar structure stems in part from the types of kinetic events leading up to its formation, with AGAAAAGA forming less amorphous structures early in the simulation than VAGAAAAGAV. The ability to form fibrils increases as the chain length and the length of the stretch of hydrophobic residues increase. However as the hydrophobicity of the sequence increases, the ability to form well-ordered structures decreases. Thus, longer hydrophobic sequences form slightly disordered aggregates that are partially fibrillar and partially amorphous. Subtle changes in sequence result in slightly different fibril structures. PMID:21557317

In Situ Soft X-ray Spectromicroscopy of Early Tricalcium Silicate Hydration

DOE PAGES

Bae, Sungchul; Kanematsu, Manabu; Hernandez-Cruz, Daniel; ...

2016-12-01

The understanding and control of early hydration of tricalcium silicate (C 3S) is of great importance to cement science and concrete technology. However, traditional characterization methods are incapable of providing morphological and spectroscopic information about in situ hydration at the nanoscale. Using soft X-ray spectromicroscopy, we report the changes in morphology and molecular structure of C 3S at an early stage of hydration. In situ C 3S hydration in a wet cell, beginning with induction (~1 h) and acceleration (~4 h) periods of up to ~8 h, was studied and compared with ex situ measurements in the deceleration period aftermore » 15 h of curing. Analysis of the near-edge X-ray absorption fine structure showed that the Ca binding energy and energy splitting of C 3S changed rapidly in the early age of hydration and exhibited values similar to calcium silicate hydrate (C–S–H). The formation of C–S–H nanoseeds in the C 3S solution and the development of a fibrillar C–S–H morphology on the C 3S surface were visualized. Following this, silicate polymerization accompanied by C–S–H precipitation produced chemical shifts in the peaks of the main Si K edge and in multiple scattering. However, the silicate polymerization process did not significantly affect the Ca binding energy of C–S–H.« less

In Situ Soft X-ray Spectromicroscopy of Early Tricalcium Silicate Hydration

PubMed Central

Bae, Sungchul; Kanematsu, Manabu; Hernández-Cruz, Daniel; Moon, Juhyuk; Kilcoyne, David; Monteiro, Paulo J. M.

2016-01-01

The understanding and control of early hydration of tricalcium silicate (C3S) is of great importance to cement science and concrete technology. However, traditional characterization methods are incapable of providing morphological and spectroscopic information about in situ hydration at the nanoscale. Using soft X-ray spectromicroscopy, we report the changes in morphology and molecular structure of C3S at an early stage of hydration. In situ C3S hydration in a wet cell, beginning with induction (~1 h) and acceleration (~4 h) periods of up to ~8 h, was studied and compared with ex situ measurements in the deceleration period after 15 h of curing. Analysis of the near-edge X-ray absorption fine structure showed that the Ca binding energy and energy splitting of C3S changed rapidly in the early age of hydration and exhibited values similar to calcium silicate hydrate (C–S–H). The formation of C–S–H nanoseeds in the C3S solution and the development of a fibrillar C–S–H morphology on the C3S surface were visualized. Following this, silicate polymerization accompanied by C–S–H precipitation produced chemical shifts in the peaks of the main Si K edge and in multiple scattering. However, the silicate polymerization process did not significantly affect the Ca binding energy of C–S–H. PMID:28774096

Presence of the dinosaur Scelidosaurus indicates Jurassic age for the Kayenta Formation (Glen Canyon Group, northern Arizona)

NASA Astrophysics Data System (ADS)

Padian, Kevin

1989-05-01

The Glen Canyon Group (Moenave, Wingate, Kayenta and Navajo Formations) of northern Arizona represents an extensive outcrop of early Mesozoic age terrestrial sediments. The age of these formations has long been disputed because independent stratigraphic data from marine tie-ins, paleobotanical and palynological evidence, and radiometric calibrations have been scanty or absent. The fauna of the Kayenta Formation in particular has been problematic because it has appeared to contain both typical Late Triassic and Early Jurassic taxa Here I report that the principal evidence for Late Triassic taxa, dermal scutes previously assigned to an aetosaur, in fact belongs to the thyreophoran ornithischian dinosaur Scelidosaurus, previously known only as a washed-in form found in marine sediments in the Early Jurassic of England. The presence of this dinosaur represents the first vertebrate biostratigraphic tie-in of the Glen Canyon Group horizons with reliably dated marine deposits in Europe. Together with revised systematic assessments of other vertebrates and independent evidence from fossil pollen, it supports an Early Jurassic age for the Kayenta Formation and most or all of the Glen Canyon Group.

Glucose Modulation Induces Lysosome Formation and Increases Lysosomotropic Drug Sequestration via the P-Glycoprotein Drug Transporter*

PubMed Central

Seebacher, Nicole A.; Lane, Darius J. R.; Jansson, Patric J.; Richardson, Des R.

2016-01-01

Pgp is functional on the plasma membrane and lysosomal membrane. Lysosomal-Pgp can pump substrates into the organelle, thereby trapping certain chemotherapeutics (e.g. doxorubicin; DOX). This mechanism serves as a “safe house” to protect cells against cytotoxic drugs. Interestingly, in contrast to DOX, lysosomal sequestration of the novel anti-tumor agent and P-glycoprotein (Pgp) substrate, di-2-pyridylketone-4,4-dimethyl-3-thiosemicarbazone (Dp44mT), induces lysosomal membrane permeabilization. This mechanism of lysosomal-Pgp utilization enhances cytotoxicity to multidrug-resistant cells. Consequently, Dp44mT has greater anti-tumor activity in drug-resistant relative to non-Pgp-expressing tumors. Interestingly, stressors in the tumor microenvironment trigger endocytosis for cell signaling to assist cell survival. Hence, this investigation examined how glucose variation-induced stress regulated early endosome and lysosome formation via endocytosis of the plasma membrane. Furthermore, the impact of glucose variation-induced stress on resistance to DOX was compared with Dp44mT and its structurally related analogue, di-2-pyridylketone 4-cyclohexyl-4-methyl-3-thiosemicarbazone (DpC). These studies showed that glucose variation-induced stress-stimulated formation of early endosomes and lysosomes. In fact, through the process of fluid-phase endocytosis, Pgp was redistributed from the plasma membrane to the lysosomal membrane via early endosome formation. This lysosomal-Pgp actively transported the Pgp substrate, DOX, into the lysosome where it became trapped as a result of protonation at pH 5. Due to increased lysosomal DOX trapping, Pgp-expressing cells became more resistant to DOX. In contrast, cytotoxicity of Dp44mT and DpC was potentiated due to more lysosomes containing functional Pgp under glucose-induced stress. These thiosemicarbazones increased lysosomal membrane permeabilization and cell death. This mechanism has critical implications for drug-targeting in multidrug-resistant tumors where a stressful micro-environment exists. PMID:26601947

Dynamics of prolonged salt movement in the Glückstadt Graben (NW Germany) driven by tectonic and sedimentary processes

NASA Astrophysics Data System (ADS)

Warsitzka, Michael; Kley, Jonas; Jähne-Klingberg, Fabian; Kukowski, Nina

2017-01-01

The formation of salt structures exerted a major influence on the evolution of subsidence and sedimentation patterns in the Glückstadt Graben, which is part of the Central European Basin System and comprises a post-Permian sediment thickness of up to 11 km. Driven by regional tectonics and differential loading, large salt diapirs, salt walls and salt pillows developed. The resulting salt flow significantly influenced sediment distribution in the peripheral sinks adjacent to the salt structures and overprinted the regional subsidence patterns. In this study, we investigate the geometric and temporal evolution of salt structures and subsidence patterns in the central Glückstadt Graben. Along a key geological cross section, the post-Permian strata were sequentially decompacted and restored in order to reconstruct the subsidence history of minibasins between the salt structures. The structural restoration reveals that subsidence of peripheral sinks and salt structure growth were initiated in Early to Middle Triassic time. From the Late Triassic to the Middle Jurassic, salt movement and salt structure growth never ceased, but were faster during periods of crustal extension. Following a phase from Late Jurassic to the end of the early Late Cretaceous, in which minor salt flow occurred, salt movement was renewed, particularly in the marginal parts of the Glückstadt Graben. Subsidence rates and tectonic subsidence derived from backstripping of 1D profiles reveal that especially the Early Triassic and Middle Keuper times were periods of regional extension. Three specific types of salt structures and adjacent peripheral sinks could be identified: (1) Graben centre salt walls possessing deep secondary peripheral sinks on the sides facing away from the basin centre, (2) platform salt walls, whose main peripheral sinks switched multiple times from one side of the salt wall to the other, and (3) Graben edge pillows, which show only one peripheral sink facing the basin centre.

Sterile neutrinos with secret interactions—lasting friendship with cosmology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chu, Xiaoyong; Dasgupta, Basudeb; Kopp, Joachim, E-mail: xchu@ictp.it, E-mail: bdasgupta@theory.tifr.res.in, E-mail: jkopp@uni-mainz.de

Sterile neutrinos with mass ≅ 1 eV and order 10% mixing with active neutrinos have been proposed as a solution to anomalies in neutrino oscillation data, but are tightly constrained by cosmological limits. It was recently shown that these constraints are avoided if sterile neutrinos couple to a new MeV-scale gauge boson A'. However, even this scenario is restricted by structure formation constraints when A'-mediated collisional processes lead to efficient active-to-sterile neutrino conversion after neutrinos have decoupled. In view of this, we reevaluate in this paper the viability of sterile neutrinos with such ''secret'' interactions. We carefully dissect their evolution inmore » the early Universe, including the various production channels and the expected modifications to large scale structure formation. We argue that there are two regions in parameter space—one at very small A' coupling, one at relatively large A' coupling—where all constraints from big bang nucleosynthesis (BBN), cosmic microwave background (CMB), and large scale structure (LSS) data are satisfied. Interestingly, the large A' coupling region is precisely the region that was previously shown to have potentially important consequences for the small scale structure of dark matter halos if the A' boson couples also to the dark matter in the Universe.« less

A challenge for probing the statistics of interstellar magnetic fields: beyond the Planck resolution with Herschel

NASA Astrophysics Data System (ADS)

Bracco, Andrea; André, Philippe; Boulanger, Francois

2015-08-01

The recent Planck results in polarization at sub-mm wavelengths allow us to gain insight into the Galactic magnetic field topology, revealing its statistical correlation with matter, from the diffuse interstellar medium (ISM), to molecular clouds (MCs) (Planck intermediate results. XXXII, XXXIII, XXXV). This correlation has a lot to tell us about the dynamics of the turbulent ISM, stressing the importance of considering magnetic fields in the formation of structures, some of which eventually undergo gravitational collapse producing new star-forming cores.Investigating the early phases of star formation has been a fundamental scope of the Herschel Gould Belt survey collaboration (http://gouldbelt-herschel.cea.fr), which, in the last years, has thoroughly characterized, at a resolution of few tens of arcseconds, the statistics of MCs, such as their filamentary structure, kinematics and column density.Although at lower angular resolution, the Planck maps of dust emission at 353GHz, in intensity and polarization, show that all MCs are complex environments, where we observe a non-trivial correlation between the magnetic field and their density structure. This result opens new perspectives on their formation and evolution, which we have started to explore.In this talk, I will present first results of a comparative analysis of the Herschel-Planck data, where we combine the high resolution Herschel maps of some MCs of the Gould Belt with the Planck polarization data, which sample the structure of the field weighted by the density.In particular, I will discuss the large-scale envelopes of the selected MCs, and, given the correlation between magnetic field and matter, I will show how to make use of the high resolution information of the density structure provided by Herschel to investigate the statistics of interstellar magnetic fields in the Planck data.

Trace fossils of microbial colonization on Mars: Criteria for search and for sample return

NASA Technical Reports Server (NTRS)

Friedmann, E. I.

1988-01-01

The recent discovery of microbial trace-fossil formation in the frigid Ross Desert of Antarctica suggests that early primitive life on Mars may have left behind similar signatures. These trace fossils are apparent as chemical or physical changes in rock (or sediment) structure (or chemistry) caused by the activity of organisms. Life on Mars, if it ever existed, almost certainly did not evolve above the level of microorganisms, and this should be considered in search for fossil life. For the reasons detailed here, microbial trace fossils seem to be a better and more realistic target for search than would be true microbial fossils (remnants of cellular structures).

Crystallization dynamics on curved surfaces

NASA Astrophysics Data System (ADS)

García, Nicolás A.; Register, Richard A.; Vega, Daniel A.; Gómez, Leopoldo R.

2013-07-01

We study the evolution from a liquid to a crystal phase in two-dimensional curved space. At early times, while crystal seeds grow preferentially in regions of low curvature, the lattice frustration produced in regions with high curvature is rapidly relaxed through isolated defects. Further relaxation involves a mechanism of crystal growth and defect annihilation where regions with high curvature act as sinks for the diffusion of domain walls. The pinning of grain boundaries at regions of low curvature leads to the formation of a metastable structure of defects, characterized by asymptotically slow dynamics of ordering and activation energies dictated by the largest curvatures of the system. These glassylike ordering dynamics may completely inhibit the appearance of the ground-state structures.

Anisotropies of the cosmic microwave background in nonstandard cold dark matter models

NASA Technical Reports Server (NTRS)

Vittorio, Nicola; Silk, Joseph

1992-01-01

Small angular scale cosmic microwave anisotropies in flat, vacuum-dominated, cold dark matter cosmological models which fit large-scale structure observations and are consistent with a high value for the Hubble constant are reexamined. New predictions for CDM models in which the large-scale power is boosted via a high baryon content and low H(0) are presented. Both classes of models are consistent with current limits: an improvement in sensitivity by a factor of about 3 for experiments which probe angular scales between 7 arcmin and 1 deg is required, in the absence of very early reionization, to test boosted CDM models for large-scale structure formation.

Thin Planes of Satellites in ΛCDM are not kinematically coherent

NASA Astrophysics Data System (ADS)

Buck, Tobias; Dutton, Aaron A.; Macciò, Andrea V.

2017-03-01

Recently it has been shown by Ibata et al. (2013) that a large fraction of the dwarf satellite galaxies found in the PAndAS survey (McConnachie et al. 2009) and orbiting the Andromeda galaxy are surprisingly aligned in a thin, extended, and kinematically coherent planar structure. The presence of such a structure seems to challenge the current Cold Dark Matter paradigm of structure formation (Ibata et al. 2014, Pawlowski et al. 2014), which predicts a more uniform distribution of satellites around central objects. We show that it is possible to obtain a thin, extended, rotating plane of satellites resembling the one in Andromeda in cosmological collisionless simulations based on this model. Our new 21 high-resolution simulations (see Buck et al. 2015) show a correlation between the formation time of the dark matter halo and the thickness of the plane of satellites. Our simulations have a high incidence of satellite planes as thin, extended, and as rich as the one in Andromeda and with a very coherent kinematic structure when we select early forming haloes. By tracking the formation of the satellites in the plane we show that they have mainly been accreted onto the main object along thin dark matter filaments at high redshift (Dekel et al. 2009, Libeskind et al. 2009, 2011). Our results show that the presence of a thin, extended, rotating plane of satellites is not a challenge for the Cold Dark Matter paradigm, but actually supports one of the predictions of this paradigm related to the presence of filaments of dark matter around galaxies at high redshift.

Early Stages of Oxidative Stress-Induced Membrane Permeabilization: A Neutron Reflectometry Study

PubMed Central

Smith, Hillary L.; Howland, Michael C.; Szmodis, Alan W.; Li, Qijuan; Daemen, Luke L.; Parikh, Atul N.; Majewski, Jaroslaw

2009-01-01

Neutron reflectometry was used to probe in situ the structure of supported lipid bilayers at the solid–liquid interface during the early stages of UV-induced oxidative degradation. Single-component supported lipid bilayers composed of gel phase, dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), and fluid phase, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), phospholipids were exposed to low-dose oxidative stress generated by UV light and their structures were examined by neutron reflectometry. An interrupted illumination mode, involving exposures in 15 min increments with 2 h intervals between subsequent exposures, and a continuous mode involving a single 60 (or 90) min exposure period were employed. In both cases, pronounced differences in the structure of the lipid bilayer after exposure were observed. Interrupted exposure led to a substantial decrease in membrane coverage but preserved its total thickness at reduced scattering length densities. These results indicate that the initial phase during UV-induced membrane degradation involves the formation of hydrophilic channels within the membrane. This is consistent with the loss of some lipid molecules we observe and attendant reorganization of residual lipids forming hemimicellar edges of the hydrophilic channels. In contrast, continuous illumination produced a graded interface of continuously varied scattering length density (and hence hydrocarbon density) extending 100–150 Å into the liquid phase. Exposure of a DPPC bilayer to UV light in the presence of a reservoir of unfused vesicles showed low net membrane disintegration during oxidative stress, presumably because of surface back-filling from the bulk reservoir. Chemical evidence for membrane degradation was obtained by mass spectrometry and Fourier transform infrared spectroscopy. Further evidence for the formation of hydrophilic channels was furnished by fluorescence microscopy and imaging ellipsometry data. PMID:19275260

An intramontane pull-apart basin in tectonic escape deformation: Elbistan Basin, Eastern Taurides, Turkey

NASA Astrophysics Data System (ADS)

Yusufoğlu, H.

2013-04-01

The Elbistan Basin in the east-Central Anatolia is an intramontane structural depression in the interior part of the Anatolide-Tauride Platform. The Neogene fill in and around Elbistan Basin develops above the Upper Devonian to lower Tertiary basement and comprises two units separated by an angular unconformity: (1) intensely folded and faulted Miocene shallow marine to terrestrial and lacustrine sediments and (2) nearly flat-lying lignite-bearing lacustrine (lower unit) and fluvial (upper unit) deposits of Plio-Quaternary Ahmetçik Formation. The former is composed of Lower-Middle Miocene Salyan, Middle-upper Middle Miocene Gövdelidağ and Upper Miocene Karamağara formations whereas the latter one is the infill of the basin itself in the present configuration of the Elbistan Basin. The basin is bound by normal faults with a minor strike-slip component. It commenced as an intramontane pull-apart basin and developed as a natural response to Early Pliocene tectonic escape-related strike-slip faulting subsequent to post-collisional intracontinental compressional tectonics during which Miocene sediments were intensely deformed. The Early Pliocene time therefore marks a dramatic changeover in tectonic regime and is interpreted as the beginning of the ongoing last tectonic evolution and deformation style in the region unlike to previous views that it commenced before that time. Consequently, the Elbistan Basin is a unique structural depression that equates the extensional strike-slip regime in east-Central Anatolia throughout the context of the neotectonical framework of Turkey across progressive collision of Arabia with Eurasia. Its Pliocene and younger history differs from and contrasts with that of the surrounding pre-Pliocene basins such as Karamağara Basin, on which it has been structurally superimposed.

EVOLUTION OF GALAXIES AND THEIR ENVIRONMENTS AT z = 0.1-3 IN COSMOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scoville, N.; Benson, A.; Fu, Hai

2013-05-01

Large-scale structures (LSSs) out to z < 3.0 are measured in the Cosmic Evolution Survey (COSMOS) using extremely accurate photometric redshifts (photoz). The K{sub s} -band-selected sample (from Ultra-Vista) is comprised of 155,954 galaxies. Two techniques-adaptive smoothing and Voronoi tessellation-are used to estimate the environmental densities within 127 redshift slices. Approximately 250 statistically significant overdense structures are identified out to z = 3.0 with shapes varying from elongated filamentary structures to more circularly symmetric concentrations. We also compare the densities derived for COSMOS with those based on semi-analytic predictions for a {Lambda}CDM simulation and find excellent overall agreement between themore » mean densities as a function of redshift and the range of densities. The galaxy properties (stellar mass, spectral energy distributions (SEDs), and star formation rates (SFRs)) are strongly correlated with environmental density and redshift, particularly at z < 1.0-1.2. Classifying the spectral type of each galaxy using the rest-frame b - i color (from the photoz SED fitting), we find a strong correlation of early-type galaxies (E-Sa) with high-density environments, while the degree of environmental segregation varies systematically with redshift out to z {approx} 1.3. In the highest density regions, 80% of the galaxies are early types at z = 0.2 compared to only 20% at z = 1.5. The SFRs and the star formation timescales exhibit clear environmental correlations. At z > 0.8, the SFR density is uniformly distributed over all environmental density percentiles, while at lower redshifts the dominant contribution is shifted to galaxies in lower density environments.« less

The dlx5a/dlx6a Genes Play Essential Roles in the Early Development of Zebrafish Median Fin and Pectoral Structures

PubMed Central

Heude, Églantine; Shaikho, Sarah; Ekker, Marc

2014-01-01

The Dlx5 and Dlx6 genes encode homeodomain transcription factors essential for the proper development of limbs in mammalian species. However, the role of their teleost counterparts in fin development has received little attention. Here, we show that dlx5a is an early marker of apical ectodermal cells of the pectoral fin buds and of the median fin fold, but also of cleithrum precursor cells during pectoral girdle development. We propose that early median fin fold establishment results from the medial convergence of dlx5a-expressing cells at the lateral edges of the neural keel. Expression analysis also shows involvement of dlx5a during appendage skeletogenesis. Using morpholino-mediated knock down, we demonstrate that disrupted dlx5a/6a function results in pectoral fin agenesis associated with misexpression of bmp4, fgf8a, and1 and msx genes. In contrast, the median fin fold presents defects in mesenchymal cell migration and actinotrichia formation, whereas the initial specification seems to occur normally. Our results demonstrate that the dlx5a/6a genes are essential for the induction of pectoral fin outgrowth, but are not required during median fin fold specification. The dlx5a/6a knock down also causes a failure of cleithrum formation associated with a drastic loss of runx2b and col10a1 expression. The data indicate distinct requirements for dlx5a/6a during median and pectoral fin development suggesting that initiation of unpaired and paired fin formation are not directed through the same molecular mechanisms. Our results refocus arguments on the mechanistic basis of paired appendage genesis during vertebrate evolution. PMID:24858471

Highly Seasonal and Perennial Fluvial Facies: Implications for Climatic Control on the Douglas Creek and Parachute Creek Members, Green River Formation, Southeastern Uinta Basin, Utah

NASA Astrophysics Data System (ADS)

Gall, Ryan D.

The early to middle Eocene Green River Formation consists of continental strata deposited in Laramide ponded basins in Utah, Colorado, and Wyoming. This study (1) documents fluvial and lacustrine strata from the Douglas Creek and Parachute Creek Members of the middle Green River Formation, southeastern Uinta Basin, Utah, and (2) uses new interpretations of the link between climate and fluvial sedimentary expression to interpret the terrestrial evolution of early Eocene climate. The stratigraphy was analyzed via outcrops along a 10 km transect in Main Canyon on the Tavaputs Plateau, and is divided into three distinct, stratigraphically separated depositional settings: (1) the lowermost Interval 1 is dominated by amalgamated sandstone channels that contain 70-100% upper flow regime sedimentary structures. The channels are interpreted to represent fluvial deposits controlled by a highly seasonal climate, where most deposition was limited to seasonal flooding events. (2) Interval 2 is dominated by alternating siliciclastic and carbonate lacustrine deposits, interpreted as local pulsed fluvial siliciclastic input into shallow Lake Uinta, and periods of fluvial quiescence represented by littoral carbonate deposition. (3) The uppermost Interval 3 is dominated by erosively-based, trough cross bedded sandstone channels interbedded with littoral lacustrine and deltaic deposits. The Interval 3 sandstone channels are interpreted as perennial fluvial deposits with relatively little variation in annual discharge, akin to modern humid-temperate fluvial systems. The stratigraphic transition from seasonally-controlled (Interval 1) to perennial (Interval 3) fluvial deposits is interpreted to represent a fundamental shift in Eocene climate, from the peak hyperthermal regime of the Early Eocene Climatic Optimum (EECO) to a more stable post-EECO climate.

Dzhida Ore District: Geology, Structural and Metallogenic Regionalization, Genetic Types of Ore Deposits, Geodynamic Conditions of Their Formation, Forecast, and Outlook for Development

NASA Astrophysics Data System (ADS)

Gordienko, I. V.; Gorokhovsky, D. V.; Smirnova, O. K.; Lantseva, V. S.; Badmatsyrenova, R. A.; Orsoev, D. A.

2018-01-01

Based on complex structural, rheological, and metallogenic studies, taking into account the results of earlier subject-specific, prospecting, mapping, and exploration works, it has been established that the geological structure of the district was caused by the ensimatic evolution of the Vendian-Early Paleozoic Dzhida island-arc system, in which oceanic and island-arc complexes served as a melanocratic basement for Late Paleozoic-Mesozoic active within-plate (riftogenic) processes, which gave rise to the formation of ore deposits and occurrences of strategic mineral commodities (Mo, W, Au, Pt, Ag, and rare elements, including REE). Mantle plumes and flows of deep-seated transmagmatic solutions (ore-forming fluids) played a critical role in these processes, the significance of which increases in upper crustal swarms of dikes and fault systems. The forecasts and development prospects of the Dzhida ore district envisage the expansion of geological prospecting and exploration, scientific research, and technological testing of ore for insight into strategic mineral commodities, as well as reanimation of mining within the areas of the Dzhida's large territorial and industrial complex (TIC) in eastern Siberia.

Nonthermal WIMPs and primordial black holes

NASA Astrophysics Data System (ADS)

Georg, Julian; Şengör, Gizem; Watson, Scott

2016-06-01

Nonthermal histories for the early universe have received notable attention as they are a rich source of phenomenology, while also being well motivated by top-down approaches to beyond the Standard Model physics. The early (pre-big bang nucleosynthesis) matter phase in these models leads to enhanced growth of density perturbations on sub-Hubble scales. Here, we consider whether primordial black hole formation associated with the enhanced growth is in conflict with existing observations. Such constraints depend on the tilt of the primordial power spectrum, and we find that nonthermal histories are tightly constrained in the case of a significantly blue spectrum. Alternatively, if dark matter is taken to be of nonthermal origin, we can restrict the primordial power spectrum on scales inaccessible to cosmic microwave background and large scale structure observations. We establish constraints for a wide range of scalar masses (reheat temperatures) with the most stringent bounds resulting from the formation of 1015 g black holes. These black holes would be evaporating today and are constrained by FERMI observations. We also consider whether the breakdown of the coherence of the scalar oscillations on subhorizon scales can lead to a Jean's pressure preventing black hole formation and relaxing our constraints. Our main conclusion is that primordial black hole constraints, combined with existing constraints on nonthermal weakly interacting massive particles, favor a primordial spectrum closer to scale invariance or a red tilted spectrum.

Young, metal-enriched cores in early-type dwarf galaxies in the Virgo cluster based on colour gradients

NASA Astrophysics Data System (ADS)

Urich, Linda; Lisker, Thorsten; Janz, Joachim; van de Ven, Glenn; Leaman, Ryan; Boselli, Alessandro; Paudel, Sanjaya; Sybilska, Agnieszka; Peletier, Reynier F.; den Brok, Mark; Hensler, Gerhard; Toloba, Elisa; Falcón-Barroso, Jesús; Niemi, Sami-Matias

2017-10-01

Early-type dwarf galaxies are not simply featureless, old objects, but were found to be much more diverse, hosting substructures and a variety of stellar population properties. To explore the stellar content of faint early-type galaxies, and to investigate in particular those with recent central star formation, we study colours and colour gradients within one effective radius in optical (g - r) and near-infrared (I - H) bands for 120 Virgo cluster early-type galaxies with - 19 mag

Post-recombination early Universe cooling by translation-internal inter-conversion: The role of minor constituents.

PubMed

McCaffery, Anthony J

2015-09-14

Little is known of the mechanism by which H and H2, the principal constituents of the post-re-combination early Universe, cooled sufficiently to permit cluster formation, nucleosynthesis, and, eventually, the formation of structured objects. Radiative decay primarily cools the internal modes of H2, as Δj = - 2 jumps accompany quadrupolar emission. This, however, would be a self-limiting mechanism. In this work, a translational energy cooling mechanism based on collision-induced, translation-to-internal mode conversion, is extended, following an earlier study [A. J. McCaffery and R. J. Marsh, J. Chem. Phys. 139, 234310 (2013)] of ensembles comprising H2 in a H atom bath gas. Here, the possible influence of minor species, such as HD, on this cooling mechanism is investigated. Results suggest that the influence of HD is small but not insignificant. Conversion is very rapid and an overall translation-to-internal energy conversion efficiency of some 5% could be expected. This finding may be of use in the further development of models of this complex phase of early Universe evolution. An unexpected finding in this study was that H2 + HD ensembles are capable of very rapid translation-to-internal conversion with efficiencies of >40% and relaxation rates that appear to be relatively slow. This may have potential as an energy storage mechanism.

Post-recombination early Universe cooling by translation–internal inter-conversion: The role of minor constituents

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCaffery, Anthony J., E-mail: A.J.McCaffery@sussex.ac.uk

Little is known of the mechanism by which H and H{sub 2}, the principal constituents of the post-re-combination early Universe, cooled sufficiently to permit cluster formation, nucleosynthesis, and, eventually, the formation of structured objects. Radiative decay primarily cools the internal modes of H{sub 2}, as Δj = − 2 jumps accompany quadrupolar emission. This, however, would be a self-limiting mechanism. In this work, a translational energy cooling mechanism based on collision-induced, translation-to-internal mode conversion, is extended, following an earlier study [A. J. McCaffery and R. J. Marsh, J. Chem. Phys. 139, 234310 (2013)] of ensembles comprising H{sub 2} in amore » H atom bath gas. Here, the possible influence of minor species, such as HD, on this cooling mechanism is investigated. Results suggest that the influence of HD is small but not insignificant. Conversion is very rapid and an overall translation-to-internal energy conversion efficiency of some 5% could be expected. This finding may be of use in the further development of models of this complex phase of early Universe evolution. An unexpected finding in this study was that H{sub 2} + HD ensembles are capable of very rapid translation-to-internal conversion with efficiencies of >40% and relaxation rates that appear to be relatively slow. This may have potential as an energy storage mechanism.« less

A dust-obscured massive maximum-starburst galaxy at a redshift of 6.34.

PubMed

Riechers, Dominik A; Bradford, C M; Clements, D L; Dowell, C D; Pérez-Fournon, I; Ivison, R J; Bridge, C; Conley, A; Fu, Hai; Vieira, J D; Wardlow, J; Calanog, J; Cooray, A; Hurley, P; Neri, R; Kamenetzky, J; Aguirre, J E; Altieri, B; Arumugam, V; Benford, D J; Béthermin, M; Bock, J; Burgarella, D; Cabrera-Lavers, A; Chapman, S C; Cox, P; Dunlop, J S; Earle, L; Farrah, D; Ferrero, P; Franceschini, A; Gavazzi, R; Glenn, J; Solares, E A Gonzalez; Gurwell, M A; Halpern, M; Hatziminaoglou, E; Hyde, A; Ibar, E; Kovács, A; Krips, M; Lupu, R E; Maloney, P R; Martinez-Navajas, P; Matsuhara, H; Murphy, E J; Naylor, B J; Nguyen, H T; Oliver, S J; Omont, A; Page, M J; Petitpas, G; Rangwala, N; Roseboom, I G; Scott, D; Smith, A J; Staguhn, J G; Streblyanska, A; Thomson, A P; Valtchanov, I; Viero, M; Wang, L; Zemcov, M; Zmuidzinas, J

2013-04-18

Massive present-day early-type (elliptical and lenticular) galaxies probably gained the bulk of their stellar mass and heavy elements through intense, dust-enshrouded starbursts--that is, increased rates of star formation--in the most massive dark-matter haloes at early epochs. However, it remains unknown how soon after the Big Bang massive starburst progenitors exist. The measured redshift (z) distribution of dusty, massive starbursts has long been suspected to be biased low in z owing to selection effects, as confirmed by recent findings of systems with redshifts as high as ~5 (refs 2-4). Here we report the identification of a massive starburst galaxy at z = 6.34 through a submillimetre colour-selection technique. We unambiguously determined the redshift from a suite of molecular and atomic fine-structure cooling lines. These measurements reveal a hundred billion solar masses of highly excited, chemically evolved interstellar medium in this galaxy, which constitutes at least 40 per cent of the baryonic mass. A 'maximum starburst' converts the gas into stars at a rate more than 2,000 times that of the Milky Way, a rate among the highest observed at any epoch. Despite the overall downturn in cosmic star formation towards the highest redshifts, it seems that environments mature enough to form the most massive, intense starbursts existed at least as early as 880 million years after the Big Bang.

The role of igneous sills in shaping the Martian uplands

NASA Technical Reports Server (NTRS)

Wilhelms, D. E.; Baldwin, R. J.

1989-01-01

Relations among geologic units and landforms suggest that igneous sills lie beneath much of the intercrater and intracrater terrain of the Martian uplands. The igneous rocks crop out along the upland-lowland front and in crater floors and other depressions that are low enough to intersect the sill's intrusion horizons. It is suggested that heat from the cooling sills melted some of the ice contained in overlying fragmental deposits, creating valley networks by subsurface flow of the meltwater. Terrains with undulatory, smooth surfaces and softened traces of valleys were created by more direct contact with the sills. Widespread subsidence following emplacement of the sills deformed both them and the nonvolcanic deposits that overlie them, accounting for the many structures that continue from ridged plains into the hilly uplands. Crater counts show that the deposit that became valleyed, softened, and ridged probably began to form (and to acquire interstitial ice) during or shortly after the Middle Noachian Epoch, and continued to form as late as the Early Hesperian Epoch. The upper layers of this deposit, many of the visible valleys, and the ridged plains and postulated sills all have similar Early Hesperian ages. Continued formation of valleys is indicated by their incision of fresh-appearing crater ejecta. The dependence of valley formation on internal processes implies that Mars did not necessarily have a dense early atmosphere or warm climate.

The autism associated MET receptor tyrosine kinase engages early neuronal growth mechanism and controls glutamatergic circuits development in the forebrain

PubMed Central

Peng, Yun; Lu, Zhongming; Li, Guohui; Piechowicz, Mariel; Anderson, Miranda; Uddin, Yasin; Wu, Jie; Qiu, Shenfeng

2015-01-01

The human MET gene imparts a replicated risk for autism spectrum disorder (ASD), and is implicated in the structural and functional integrity of brain. MET encodes a receptor tyrosine kinase, MET, which plays a pleiotropic role in embryogenesis and modifies a large number of neurodevelopmental events. Very little is known, however, on how MET signaling engages distinct cellular events to collectively affect brain development in ASD-relevant disease domains. Here, we show that MET protein expression is dynamically regulated and compartmentalized in developing neurons. MET is heavily expressed in neuronal growth cones at early developmental stages and its activation engages small GTPase Cdc42 to promote neuronal growth, dendritic arborization, and spine formation. Genetic ablation of MET signaling in mouse dorsal pallium leads to altered neuronal morphology indicative of early functional maturation. In contrast, prolonged activation of MET represses the formation and functional maturation of glutamatergic synapses. Moreover, manipulating MET signaling levels in vivo in the developing prefrontal projection neurons disrupts the local circuit connectivity made onto these neurons. Therefore, normal time-delimited MET signaling is critical in regulating the timing of neuronal growth, glutamatergic synapse maturation and cortical circuit function. Dysregulated MET signaling may lead to pathological changes in forebrain maturation and connectivity, and thus contribute to the emergence of neurological symptoms associated with ASD. PMID:26728565

NanoSIMS Sheds Light on the Origin and Significance of Early Archean Organic Microstructures from the Pilbara of Australia

NASA Technical Reports Server (NTRS)

Oehler, Dorothy Z.; Robert, Francois; Meibom, Anders; Mostefaoui, Smail; Selo, Madeleine; Walter, Malcolm, R.; Sugitani, Kenichiro; Allwood, Abigail; Gibson, Everett K.

2008-01-01

NanoSIMS was used to characterize sub-micron scale morphology and elemental composition (C, N, S, Si, O) of organic microstructures in Early Archean (3 - 3.4 Ga) charts from the Pilbara of Western Australia. Three categories of structures were analyzed: small spheroids in clusters; spindle-shaped remains; and large spheroids. All are relatively poorly preserved and occur within the chert matrix of the samples. Carbonaceous material in a secondary hydrothermal vein also was analyzed, as an example of non-indigenous organic matter. Comparisons were made of NanoSIMS characteristics of the Archean samples and those from well-preserved, biogenic microfossils in the 0.8 Ga Bitter Springs Formation. The comparisons show that the Pilbara microstructures are generally distinct from material in the hydrothermal vein but similar in morphology and elemental composition to the Bitter Springs microfossils. In addition, the Pilbara structures exhibit a spatial relationship to silicon and oxygen that seemingly reflects silica nucleation on organic surfaces; this argues that the organic frameworks of the Archean structures were present in the sediment during crystallization of the silica matrix. The structures are thus interpreted as being indigenous to the enclosing sediment. While these results are suggestive of Early Archean biogenicity and are consistent with a growing body of data suggesting that life on Earth was well established by 3 to 3.4 Ga, work is continuing to determine the N/C and 13C ratios of individual forms, and this should provide additional insight into the derivation and significance of these ancient organic remains.

Geologic Map of the Gold Creek Gold District, Elko County, Nevada

USGS Publications Warehouse

Ketner, Keith B.

2007-01-01

The Gold Creek, Nev. area displays important stratigraphic and structural relationships between Paleozoic and early Tertiary sedimentary strata in an area dominated by large intrusive bodies of Mesozoic age and extensive volcanic fields of middle to late Tertiary age. An autochthonous sequence includes the Cambrian and Proterozoic(?) Prospect Mountain Quartzite and the overlying Cambrian and Ordovician Tennessee Mountain Formation. This autochthon is overlain by three allochthonous plates each composed of a distinctive sequence of strata and having a distinctive internal structure. The structurally lowest plate is composed of the Havallah sequence, locally of Mississippian and Pennsylvanian age, which is folded on north-south trending axes. The next higher plate is composed of somewhat younger Pennsylvanian and Permian strata cut by east-west trending low-angle faults. The highest plate is composed of early Tertiary non-marine sedimentary and igneous rocks folded on varied but mainly north-south trending axes. The question of whether the allochthonous plates were emplaced by contractional or extensional forces is indeterminate from the local evidence. Mineral deposits include gold placers of moderate size and small pockets of base metals, none of which is currently being exploited.

Early-lanthanide(III) acetonitrile–solvento adducts with iodide and noncoordinating anions

DOE PAGES

Brown, Jessie L.; Davis, Benjamin L.; Scott, Brian L.; ...

2015-12-25

Dissolution of LnI 3 (Ln = La, Ce) in acetonitrile (MeCN) results in the highly soluble solvates LnI 3(MeCN) 5 [Ln = La (1), Ce (2)] in good yield. The ionic complex [La(MeCN) 9][LaI 6] (4), containing a rare homoleptic La 3+ cation and anion, was also isolated as a minor product. Extending this chemistry to NdI 3 results in the consistent formation of the complex ionic structure [Nd(MeCN) 9] 2[NdI 5(MeCN)][NdI 6][I] (3), which contains an unprecedented pentaiodide lanthanoid anion. Also described is the synthesis, isolation, and structural characterization of several homoleptic early-lanthanide MeCN solvates with noncoordinating anions, namely,more » [Ln(MeCN) 9][AlCl 4] 3 [Ln = La (5), Ce (6), Nd (7)]. Notably, complex 6 is the first homoleptic cerium MeCN solvate reported to date. All reported complexes were structurally characterized by X-ray crystallography, as well as by IR spectroscopy and CHN elemental analysis. Furthermore, complexes 1–3 were also characterized by thermogravimetric analysis coupled with mass spectrometry to further elucidate their bulk composition in the solid-state.« less

Pre-existing oblique transfer zones and transfer/transform relationships in continental margins: New insights from the southeastern Gulf of Aden, Socotra Island, Yemen

NASA Astrophysics Data System (ADS)

Bellahsen, N.; Leroy, S.; Autin, J.; Razin, P.; d'Acremont, E.; Sloan, H.; Pik, R.; Ahmed, A.; Khanbari, K.

2013-11-01

Transfer zones are ubiquitous features in continental rifts and margins, as are transform faults in oceanic lithosphere. Here, we present a structural study of the Hadibo Transfer Zone (HTZ), located in Socotra Island (Yemen) in the southeastern Gulf of Aden. There, we interpret this continental transfer fault zone to represent a reactivated pre-existing structure. Its trend is oblique to the direction of divergence and it has been active from the early up to the latest stages of rifting. One of the main oceanic fracture zones (FZ), the Hadibo-Sharbithat FZ, is aligned with and appears to be an extension of the HTZ and is probably genetically linked to it. Comparing this setting with observations from other Afro-Arabian rifts as well as with passive margins worldwide, it appears that many continental transfer zones are reactivated pre-existing structures, oblique to divergence. We therefore establish a classification system for oceanic FZ based upon their relationship with syn-rift structures. Type 1 FZ form at syn-rift structures and are late syn-rift to early syn-OCT. Type 2 FZ form during the OCT formation and Type 3 FZ form within the oceanic domain, after the oceanic spreading onset. The latter are controlled by far-field forces, magmatic processes, spreading rates, and oceanic crust rheology.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Skillman, Evan D.; Hidalgo, Sebastian L.; Monelli, Matteo

We present an analysis of the star formation history (SFH) of a field near the half-light radius in the Local Group dwarf irregular galaxy IC 1613 based on deep Hubble Space Telescope Advanced Camera for Surveys imaging. Our observations reach the oldest main sequence turn-off, allowing a time resolution at the oldest ages of ∼1 Gyr. Our analysis shows that the SFH of the observed field in IC 1613 is consistent with being constant over the entire lifetime of the galaxy. These observations rule out an early dominant episode of star formation in IC 1613. We compare the SFH ofmore » IC 1613 with expectations from cosmological models. Since most of the mass is in place at early times for low-mass halos, a naive expectation is that most of the star formation should have taken place at early times. Models in which star formation follows mass accretion result in too many stars formed early and gas mass fractions that are too low today (the 'over-cooling problem'). The depth of the present photometry of IC 1613 shows that, at a resolution of ∼1 Gyr, the star formation rate is consistent with being constant, at even the earliest times, which is difficult to achieve in models where star formation follows mass assembly.« less

Late oligocene and miocene faulting and sedimentation, and evolution of the southern Rio Grande rift, New Mexico, USA

NASA Astrophysics Data System (ADS)

Mack, Greg H.; Seager, William R.; Kieling, John

1994-08-01

The distribution of nonmarine lithofacies, paleocurrents, and provenance data are used to define the evolution of late Oligocene and Miocene basins and complementary uplifts in the southern Rio Grande rift in the vicinity of Hatch, New Mexico, USA. The late Oligocene-middle Miocene Hayner Ranch Formation, which consists of a maximum of 1000 m of alluvial-fan, alluvial-flat, and lacustrine-carbonate lithofacies, was deposited in a narrow (12 km), northwest-trending, northeast-tilted half graben, whose footwall was the Caballo Mountains block. Stratigraphic separation on the border faults of the Caballo Mountains block was approximately 1615 m. An additional 854 m of stratigraphic separation along the Caballo Mountains border faults occurred during deposition of the middle-late Miocene Rincon Valley Formation, which is composed of up to 610 m of alluvial-fan, alluvial-flat, braided-fluvial, and gypsiferous playa lithofacies. Two new, north-trending fault blocks (Sierra de las Uvas and Dona Ana Mountains) and complementary west-northwest-tilted half graben also developed during Rincon Valley time, with approximately 549 m of stratigraphic separation along the border fault of the Sierra de las Uvas block. In latest Miocene and early Pliocene time, following deposition of the Rincon Valley Formation, movement continued along the border faults of the Caballo Mountains, Dona Ana Mountains, and Sierra de las Uvas blocks, and large parts of the Hayner Ranch and Rincon Valley basins were segmented into smaller fault blocks and basins by movement along new, largely north-trending faults. Analysis of the Hayner Ranch and Rincon Valley Formations, along with previous studies of the early Oligocene Bell Top Formation and late Pliocene-early Pleistocene Camp Rice Formation, indicate that the traditional two-stage model for development of the southern Rio Grande rift should be abandoned in favor of at least four episodes of block faulting beginning 35 Ma ago. With the exception of two northwest-trending border faults of the Caballo Mountains block that may be reactivated along Eocene compressional structures, the majority of border faults and complementary basins throughout the history of the southern Rio Grande rift were north-trending, which challenges the conventional idea of a clockwise change in stress through time.

Galaxy Formation Efficiency and the Multiverse Explanation of the Cosmological Constant with EAGLE Simulations

NASA Astrophysics Data System (ADS)

Barnes, Luke A.; Elahi, Pascal J.; Salcido, Jaime; Bower, Richard G.; Lewis, Geraint F.; Theuns, Tom; Schaller, Matthieu; Crain, Robert A.; Schaye, Joop

2018-04-01

Models of the very early universe, including inflationary models, are argued to produce varying universe domains with different values of fundamental constants and cosmic parameters. Using the cosmological hydrodynamical simulation code from the EAGLE collaboration, we investigate the effect of the cosmological constant on the formation of galaxies and stars. We simulate universes with values of the cosmological constant ranging from Λ = 0 to Λ0 × 300, where Λ0 is the value of the cosmological constant in our Universe. Because the global star formation rate in our Universe peaks at t = 3.5 Gyr, before the onset of accelerating expansion, increases in Λ of even an order of magnitude have only a small effect on the star formation history and efficiency of the universe. We use our simulations to predict the observed value of the cosmological constant, given a measure of the multiverse. Whether the cosmological constant is successfully predicted depends crucially on the measure. The impact of the cosmological constant on the formation of structure in the universe does not seem to be a sharp enough function of Λ to explain its observed value alone.

Galaxy formation efficiency and the multiverse explanation of the cosmological constant with EAGLE simulations

NASA Astrophysics Data System (ADS)

Barnes, Luke A.; Elahi, Pascal J.; Salcido, Jaime; Bower, Richard G.; Lewis, Geraint F.; Theuns, Tom; Schaller, Matthieu; Crain, Robert A.; Schaye, Joop

2018-07-01

Models of the very early Universe, including inflationary models, are argued to produce varying universe domains with different values of fundamental constants and cosmic parameters. Using the cosmological hydrodynamical simulation code from the EAGLE collaboration, we investigate the effect of the cosmological constant on the formation of galaxies and stars. We simulate universes with values of the cosmological constant ranging from Λ = 0 to Λ0 × 300, where Λ0 is the value of the cosmological constant in our Universe. Because the global star formation rate in our Universe peaks at t = 3.5 Gyr, before the onset of accelerating expansion, increases in Λ of even an order of magnitude have only a small effect on the star formation history and efficiency of the universe. We use our simulations to predict the observed value of the cosmological constant, given a measure of the multiverse. Whether the cosmological constant is successfully predicted depends crucially on the measure. The impact of the cosmological constant on the formation of structure in the universe does not seem to be a sharp enough function of Λ to explain its observed value alone.

Coupled 182W-142Nd constraint for early Earth differentiation

PubMed Central

Moynier, Frederic; Yin, Qing-Zhu; Irisawa, Keita; Boyet, Maud; Jacobsen, Benjamin; Rosing, Minik T.

2010-01-01

Recent high precision 142Nd isotope measurements showed that global silicate differentiation may have occurred as early as 30–75 Myr after the Solar System formation [Bennett V, et al. (2007) Science 318:1907–1910]. This time scale is almost contemporaneous with Earth’s core formation at ∼30 Myr [Yin Q, et al. (2002) Nature 418:949–952]. The 182Hf-182W system provides a powerful complement to the 142Nd results for early silicate differentiation, because both core formation and silicate differentiation fractionate Hf from W. Here we show that eleven terrestrial samples from diverse tectonic settings, including five early Archean samples from Isua, Greenland, of which three have been previously shown with 142Nd anomalies, all have a homogeneous W isotopic composition, which is ∼2ε-unit more radiogenic than the chondritic value. By using a 3-stage model calculation that describes the isotopic evolution in chondritic reservoir and core segregation, as well as silicate differentiation, we show that the W isotopic composition of terrestrial samples provides the most stringent time constraint for early core formation (27.5–38 Myr) followed by early terrestrial silicate differentiation (38–75 Myr) that is consistent with the terrestrial 142Nd anomalies. PMID:20534492

STAR FORMATION ACROSS THE W3 COMPLEX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Román-Zúñiga, Carlos G.; Ybarra, Jason E.; Tapia, Mauricio

We present a multi-wavelength analysis of the history of star formation in the W3 complex. Using deep, near-infrared ground-based images combined with images obtained with Spitzer and Chandra observatories, we identified and classified young embedded sources. We identified the principal clusters in the complex and determined their structure and extension. We constructed extinction-limited samples for five principal clusters and constructed K-band luminosity functions that we compare with those of artificial clusters with varying ages. This analysis provided mean ages and possible age spreads for the clusters. We found that IC 1795, the centermost cluster of the complex, still hosts amore » large fraction of young sources with circumstellar disks. This indicates that star formation was active in IC 1795 as recently as 2 Myr ago, simultaneous to the star-forming activity in the flanking embedded clusters, W3-Main and W3(OH). A comparison with carbon monoxide emission maps indicates strong velocity gradients in the gas clumps hosting W3-Main and W3(OH) and shows small receding clumps of gas at IC 1795, suggestive of rapid gas removal (faster than the T Tauri timescale) in the cluster-forming regions. We discuss one possible scenario for the progression of cluster formation in the W3 complex. We propose that early processes of gas collapse in the main structure of the complex could have defined the progression of cluster formation across the complex with relatively small age differences from one group to another. However, triggering effects could act as catalysts for enhanced efficiency of formation at a local level, in agreement with previous studies.« less

Direct Collapse to Supermassive Black Hole Seeds with Radiation Transfer: Cosmological Halos

NASA Astrophysics Data System (ADS)

Ardaneh, Kazem; Luo, Yang; Shlosman, Isaac; Nagamine, Kentaro; Wise, John H.; Begelman, Mitchell C.

2018-06-01

We have modeled direct collapse of a primordial gas within dark matter halos in the presence of radiative transfer, in high-resolution zoom-in simulations in a cosmological framework, down to the formation of the photosphere and the central object. Radiative transfer has been implemented in the flux-limited diffusion (FLD) approximation. Adiabatic models were run for comparison. We find that (a) the FLD flow forms an irregular central structure and does not exhibit fragmentation, contrary to adiabatic flow which forms a thick disk, driving a pair of spiral shocks, subject to Kelvin-Helmholtz shear instability forming fragments; (b) the growing central core in the FLD flow quickly reaches ˜10 M⊙ and a highly variable luminosity of 1038 - 1039 erg s-1, comparable to the Eddington luminosity. It experiences massive recurrent outflows driven by radiation force and thermal pressure gradients, which mix with the accretion flow and transfer the angular momentum outwards; and (c) the interplay between these processes and a massive accretion, results in photosphere at ˜10 AU. We conclude that in the FLD model (1) the central object exhibits dynamically insignificant rotation and slower than adiabatic temperature rise with density; (2) does not experience fragmentation leading to star formation, thus promoting the fast track formation of a supermassive black hole (SMBH) seed; (3) inclusion of radiation force leads to outflows, resulting in the mass accumulation within the central 10-3 pc, which is ˜100 times larger than characteristic scale of star formation. The inclusion of radiative transfer reveals complex early stages of formation and growth of the central structure in the direct collapse scenario of SMBH seed formation.

Cosmic Dawn (CoDa): the First Radiation-Hydrodynamics Simulation of Reionization and Galaxy Formation in the Local Universe

NASA Astrophysics Data System (ADS)

Ocvirk, Pierre; Gillet, Nicolas; Shapiro, Paul R.; Aubert, Dominique; Iliev, Ilian T.; Teyssier, Romain; Yepes, Gustavo; Choi, Jun-Hwan; Sullivan, David; Knebe, Alexander; Gottlöber, Stefan; D'Aloisio, Anson; Park, Hyunbae; Hoffman, Yehuda; Stranex, Timothy

2016-12-01

Cosmic reionization by starlight from early galaxies affected their evolution, thereby impacting reionization itself. Star formation suppression, for example, may explain the observed underabundance of Local Group dwarfs relative to N-body predictions for cold dark matter. Reionization modelling requires simulating volumes large enough [˜ (100 Mpc)3] to sample reionization `patchiness', while resolving millions of galaxy sources above ˜108 M⊙ combining gravitational and gas dynamics with radiative transfer. Modelling the Local Group requires initial cosmological density fluctuations pre-selected to form the well-known structures of the Local Universe today. Cosmic Dawn (`CoDa') is the first such fully coupled, radiation-hydrodynamics simulation of reionization of the Local Universe. Our new hybrid CPU-GPU code, RAMSES-CUDATON, performs hundreds of radiative transfer and ionization rate-solver timesteps on the GPUs for each hydro-gravity timestep on the CPUs. CoDa simulated (91Mpc)3 with 40963 particles and cells, to redshift 4.23, on ORNL supercomputer Titan, utilizing 8192 cores and 8192 GPUs. Global reionization ended slightly later than observed. However, a simple temporal rescaling which brings the evolution of ionized fraction into agreement with observations also reconciles ionizing flux density, cosmic star formation history, CMB electron scattering optical depth and galaxy UV luminosity function with their observed values. Photoionization heating suppressed the star formation of haloes below ˜2 × 109 M⊙, decreasing the abundance of faint galaxies around MAB1600 = [-10, -12]. For most of reionization, star formation was dominated by haloes between 1010-1011 M⊙ , so low-mass halo suppression was not reflected by a distinct feature in the global star formation history. Intergalactic filaments display sheathed structures, with hot envelopes surrounding cooler cores, but do not self-shield, unlike regions denser than 100 <ρ>.

Occludin as a functional marker of vascular endothelial cells on tube-forming activity.

PubMed

Kanayasu-Toyoda, Toshie; Ishii-Watabe, Akiko; Kikuchi, Yutaka; Kitagawa, Hiroko; Suzuki, Hiroko; Tamura, Hiroomi; Tada, Minoru; Suzuki, Takuo; Mizuguchi, Hiroyuki; Yamaguchi, Teruhide

2018-02-01

Cell therapy using endothelial progenitor cells (EPCs) is a promising strategy for the treatment of ischemic diseases. Two types of EPCs have been identified: early EPCs and late EPCs. Late EPCs are able to form tube structure by themselves, and have a high proliferative ability. The functional marker(s) of late EPCs, which relate to their therapeutic potential, have not been fully elucidated. Here we compared the gene expression profiles of several human cord blood derived late EPC lines which exhibit different tube formation activity, and we observed that the expression of occludin (OCLN) in these lines correlated with the tube formation ability, suggesting that OCLN is a candidate functional marker of late EPCs. When OCLN was knocked down by transfecting siRNA, the tube formation on Matrigel, the S phase + G 2 /M phase in the cell cycle, and the spheroid-based sprouting of late EPCs were markedly reduced, suggesting the critical role of OCLN in tube formation, sprouting, and proliferation. These results indicated that OCLN plays a novel role in neovascularization and angiogenesis. © 2017 Wiley Periodicals, Inc.

Are Coronae Restricted to Venus?: Corona-Like Tectonovolcanic Structures on Earth

NASA Astrophysics Data System (ADS)

Lopez, Ivan; Marquez, Alvaro; Oyarzun, Roberto

1997-04-01

Coronae may not be tectonovolcanic features ‘unique to Venus’ because both the processes that lead to corona formation, and their final tectonovolcanic output (formation of domes, plateaus, extensional rings, etc.), are also found on Earth. Large-scale corona formation processes on Earth may be restricted (because of plate motion) but not absent. The same applies to resurfacing processes. We here suggest that at least, the early stages of corona formation can be recognized in intraplate tectonic settings on Earth. The African plate displays many Cenozoic examples of plume-related domal uplifts and volcanism (e.g., Hoggar, Tibesti, Darfur, Ethiopia). Furthermore, the east African rift system (EARS) around lake Victoria displays many striking features that resemble those of the Venus coronae associated with extensional belts. Among these are the following: (1) an overall elliptical shape; (2) the existence of a mantle plume (Kenya plume) centered beneath lake Victoria; (3) a central plateau (east African plateau); (4) an external extensional belt (the EARS east and west branches); (5) doming processes (Kenya dome); and last but not least (6) volcanism.

High-resolution biophysical analysis of the dynamics of nucleosome formation

PubMed Central

Hatakeyama, Akiko; Hartmann, Brigitte; Travers, Andrew; Nogues, Claude; Buckle, Malcolm

2016-01-01

We describe a biophysical approach that enables changes in the structure of DNA to be followed during nucleosome formation in in vitro reconstitution with either the canonical “Widom” sequence or a judiciously mutated sequence. The rapid non-perturbing photochemical analysis presented here provides ‘snapshots’ of the DNA configuration at any given moment in time during nucleosome formation under a very broad range of reaction conditions. Changes in DNA photochemical reactivity upon protein binding are interpreted as being mainly induced by alterations in individual base pair roll angles. The results strengthen the importance of the role of an initial (H3/H4)2 histone tetramer-DNA interaction and highlight the modulation of this early event by the DNA sequence. (H3/H4)2 binding precedes and dictates subsequent H2A/H2B-DNA interactions, which are less affected by the DNA sequence, leading to the final octameric nucleosome. Overall, our results provide a novel, exciting way to investigate those biophysical properties of DNA that constitute a crucial component in nucleosome formation and stabilization. PMID:27263658

Paleo­geographic implications of molluscan assemblages in the Upper Cretaceous (Campanian) Pigeon Point Formation, California

USGS Publications Warehouse

Elder, William P.; Saul, LouElla

1993-01-01

The Pigeon Point Formation crops out along the San Mateo County coastline in a northern and southern sequence of folded and faulted strata. Correlation of the two sequences remains somewhat equivocal, although on the basis of biostratigraphy and a reversed magnetic interval both appear to have been deposited during the early to middle Campanian. Sedimentary structures suggest that the northern sequence was deposited by turbidity currents in a continental rise setting, whereas the southern sequence primarily reflects deposition in shelf and slope environments . Right-lateral offset on the San Andreas and subsidiary faults to the east of the Pigeon Point Formation can account for 100's of km of northward transport since its deposition. However, Champion and others (1984) suggested 2500 km of northward transport from a tropical setting of about 21°N. Molluscan assemblages in the formation argue strongly for a less tropical site of deposition. Relative abundances of warm and temperate taxa and the presence or absence of key species are similar to those of the Santa Ana Mountains Cretaceous section, and are indicative of a war

Linkages Between Boundary-Layer Structure and the Development of Nocturnal Low-Level Jets in Central Oklahoma

NASA Astrophysics Data System (ADS)

Klein, Petra M.; Hu, Xiao-Ming; Shapiro, Alan; Xue, Ming

2016-03-01

In the Southern Great Plains, nocturnal low-level jets (LLJs) develop frequently after sunset and play an important role in the transport and dispersion of moisture and atmospheric pollutants. However, our knowledge regarding the LLJ evolution and its feedback on the structure of the nocturnal boundary layer (NBL) is still limited. In the present study, NBL characteristics and their interdependencies with LLJ evolution are investigated using datasets collected across the Oklahoma City metropolitan area during the Joint Urban field experiment in July 2003 and from three-dimensional simulations with the Weather Research and Forecasting (WRF) model. The strength of the LLJs and turbulent mixing in the NBL both increase with the geostrophic forcing. During nights with the strongest LLJs, turbulent mixing persisted after sunset in the NBL and a strong surface temperature inversion did not develop. However, the strongest increase in LLJ speed relative to the mixed-layer wind speed in the daytime convective boundary layer (CBL) occurred when the geostrophic forcing was relatively weak and thermally-induced turbulence in the CBL was strong. Under these conditions, turbulent mixing at night was typically much weaker and a strong surface-based inversion developed. Sensitivity tests with the WRF model confirm that weakening of turbulent mixing during the decay of the CBL in the early evening transition is critical for LLJ formation. The cessation of thermally-induced CBL turbulence during the early evening transition triggers an inertial oscillation, which contributes to the LLJ formation.

Effect of surface nano/micro-structuring on the early formation of microbial anodes with Geobacter sulfurreducens: Experimental and theoretical approaches.

PubMed

Champigneux, Pierre; Renault-Sentenac, Cyril; Bourrier, David; Rossi, Carole; Delia, Marie-Line; Bergel, Alain

2018-06-01

Smooth and nano-rough flat gold electrodes were manufactured with controlled Ra of 0.8 and 4.5nm, respectively. Further nano-rough surfaces (Ra 4.5nm) were patterned with arrays of micro-pillars 500μm high. All these electrodes were implemented in pure cultures of Geobacter sulfurreducens, under a constant potential of 0.1V/SCE and with a single addition of acetate 10mM to check the early formation of microbial anodes. The flat smooth electrodes produced an average current density of 0.9A·m -2 . The flat nano-rough electrodes reached 2.5A·m -2 on average, but with a large experimental deviation of ±2.0A·m -2 . This large deviation was due to the erratic colonization of the surface but, when settled on the surface, the cells displayed current density that was directly correlated to the biofilm coverage ratio. The micro-pillars considerably improved the experimental reproducibility by offering the cells a quieter environment, facilitating biofilm development. Current densities of up to 8.5A·m -2 (per projected surface area) were thus reached, in spite of rate limitation due to the mass transport of the buffering species, as demonstrated by numerical modelling. Nano-roughness combined with micro-structuring increased current density by a factor close to 10 with respect to the smooth flat surface. Copyright © 2018 Elsevier B.V. All rights reserved.

ORIGIN: Metal Creation and Evolution From The Cosmic Dawn

NASA Astrophysics Data System (ADS)

Piro, L.; den Herder, J. W.; Ohashi, T.; Hartmann, D. H.; Kouveliotou, C.

2011-08-01

ORIGIN is a mission designed to use Gamma-Ray Bursts as a unique probe to study the cosmic history of baryons and the metal enrichment from the first stars up to the present Universe. Reconstructing the cosmic history of metals, from the first population of stars to the processes involved in the formation of galaxies and clusters of galaxies, is a key observational challenge. Observing any single star in the early Universe is in fact beyond the reach of presently planned mission. By measuring GRB redshifts and abundances in the circumburst medium deep into the era of re-ionization (z>6), ORIGIN will discover when star formation started and how it evolved into the present day structures. ORIGIN will collect 400 GRBs per year covering the full redshift distribution. About twice per month a GRB from the re-ionization era will trigger the instruments. The resulting multi-element abundance patterns derived from high resolution X-ray and IR observations will map the evolving chemical composition of the early Universe, ``fingerprint'' the elusive PopIII stars, and constrain the shape of the Initial Mass Function (IMF) of the first stars. While not observing GRB afterglows, ORIGIN will map element abundances in local structures (z<2) by determining the properties of the hot IGM in clusters and groups of galaxies and the Warm-Hot Intergalactic Medium (WHIM). In this paper we focus on the use of GRB to track the earliest star populations.

Ultrafast hydrogen exchange reveals specific structural events during the initial stages of folding of cytochrome c.

PubMed

Fazelinia, Hossein; Xu, Ming; Cheng, Hong; Roder, Heinrich

2014-01-15

Many proteins undergo a sharp decrease in chain dimensions during early stages of folding, prior to the rate-limiting step in folding. However, it remains unclear whether compact states are the result of specific folding events or a general hydrophobic collapse of the poly peptide chain driven by the change in solvent conditions. To address this fundamental question, we extended the temporal resolution of NMR-detected H/D exchange labeling experiments into the microsecond regime by adopting a microfluidics approach. By observing the competition between H/D exchange and folding as a function of labeling pH, coupled with direct measurement of exchange rates in the unfolded state, we were able to monitor hydrogen-bond formation for over 50 individual backbone NH groups within the initial 140 microseconds of folding of horse cytochrome c. Clusters of solvent-shielded amide protons were observed in two α-helical segments in the C-terminal half of the protein, while the N-terminal helix remained largely unstructured, suggesting that proximity in the primary structure is a major factor in promoting helix formation and association at early stages of folding, while the entropically more costly long-range contacts between the N- and C-terminal helices are established only during later stages. Our findings clearly indicate that the initial chain condensation in cytochrome c is driven by specific interactions among a subset of α-helical segments rather than a general hydrophobic collapse.

Refining the Formation and Early Evolution of the Eastern North American Margin: New Insights From Multiscale Magnetic Anomaly Analyses

NASA Astrophysics Data System (ADS)

Greene, John A.; Tominaga, Masako; Miller, Nathaniel C.; Hutchinson, Deborah R.; Karl, Matthew R.

2017-11-01

To investigate the oceanic lithosphere formation and early seafloor spreading history of the North Atlantic Ocean, we examine multiscale magnetic anomaly data from the Jurassic/Early Cretaceous age Eastern North American Margin (ENAM) between 31 and 40°N. We integrate newly acquired sea surface magnetic anomaly and seismic reflection data with publicly available aeromagnetic and composite magnetic anomaly grids, satellite-derived gravity anomaly, and satellite-derived and shipboard bathymetry data. We evaluate these data sets to (1) refine magnetic anomaly correlations throughout the ENAM and assign updated ages and chron numbers to M0-M25 and eight pre-M25 anomalies; (2) identify five correlatable magnetic anomalies between the East Coast Magnetic Anomaly (ECMA) and Blake Spur Magnetic Anomaly (BSMA), which may document the earliest Atlantic seafloor spreading or synrift magmatism; (3) suggest preexisting margin structure and rifting segmentation may have influenced the seafloor spreading regimes in the Atlantic Jurassic Quiet Zone (JQZ); (4) suggest that, if the BSMA source is oceanic crust, the BSMA may be M series magnetic anomaly M42 ( 168.5 Ma); (5) examine the along and across margin variation in seafloor spreading rates and spreading center orientations from the BSMA to M25, suggesting asymmetric crustal accretion accommodated the straightening of the ridge from the bend in the ECMA to the more linear M25; and (6) observe anomalously high-amplitude magnetic anomalies near the Hudson Fan, which may be related to a short-lived propagating rift segment that could have helped accommodate the crustal alignment during the early Atlantic opening.

Effects of 5-Fluorodeoxyuridine and Related Halogenated Pyrimidines on the Sand-Dollar Embryo

PubMed Central

Karnofsky, David A.; Basch, Ross S.

1960-01-01

The embryo of the sand-dollar (Echinarachnius parma) was exposed to various concentrations of fluorinated pyrimidines immediately after fertilization. FUDR (5-fluorodeoxyuridine) was most active, and a concentration of 2 to 4 mγ/10 cc. (0.8 to 1.6 x 10-6 m.eq./liter) blocked development at the early blastula stage. Larger doses interrupted development at the same stage. This effect was prevented by thymidine (TDR) and thymine (T); and these pyrimidines protected against many times the minimal lethal concentration of FUDR. TDR was active as a protective agent if added just before early blastula formation. The other fluorinated pyrimidines, 5-fluorouracil (FU), 5-fluorouridine (FUR), 5-fluorocytidine (FCR), 5-fluorodeoxycytidine (FCDR), and 5-fluoroorotic acid (FO), were also studied. These drugs produced effects on embryonic development similar to those seen with FUDR. The effective concentrations, however, varied greatly. T and TDR provided protection against these drugs, but in most cases they were not so effective as against FUDR. 5-Bromodeoxyurdine (BrUDR), beginning at the early blastula stage, caused a random pattern of embryonic death up to the pluteus stage. This drug has been shown to be incorporated into bacterial DNA. BrUDR protected embryos against the early lethal effects of FUDR presumably acting as a thymidine substitute, but the embryos died subsequently in a pattern similar to that seen with BrUDR alone. FUDR and BrUDR appear to inhibit the formation and alter the structure of DNA, respectively, distinctive effects whch may provide a means for studying the role of DNA in embryonic development. PMID:14404541

Effects of 5-fluorodeoxyuridine and related halogenated pyrimidines on the sand-dollar embryo.

PubMed

KARNOFSKY, D A; BASCH, R S

1960-02-01

The embryo of the sand-dollar (Echinarachnius parma) was exposed to various concentrations of fluorinated pyrimidines immediately after fertilization. FUDR (5-fluorodeoxyuridine) was most active, and a concentration of 2 to 4 mgamma/10 cc. (0.8 to 1.6 x 10(-6) m.eq./liter) blocked development at the early blastula stage. Larger doses interrupted development at the same stage. This effect was prevented by thymidine (TDR) and thymine (T); and these pyrimidines protected against many times the minimal lethal concentration of FUDR. TDR was active as a protective agent if added just before early blastula formation. The other fluorinated pyrimidines, 5-fluorouracil (FU), 5-fluorouridine (FUR), 5-fluorocytidine (FCR), 5-fluorodeoxycytidine (FCDR), and 5-fluoroorotic acid (FO), were also studied. These drugs produced effects on embryonic development similar to those seen with FUDR. The effective concentrations, however, varied greatly. T and TDR provided protection against these drugs, but in most cases they were not so effective as against FUDR. 5-Bromodeoxyurdine (BrUDR), beginning at the early blastula stage, caused a random pattern of embryonic death up to the pluteus stage. This drug has been shown to be incorporated into bacterial DNA. BrUDR protected embryos against the early lethal effects of FUDR presumably acting as a thymidine substitute, but the embryos died subsequently in a pattern similar to that seen with BrUDR alone. FUDR and BrUDR appear to inhibit the formation and alter the structure of DNA, respectively, distinctive effects whch may provide a means for studying the role of DNA in embryonic development.

Refining the formation and early evolution of the Eastern North American Margin: New insights from multiscale magnetic anomaly analyses

USGS Publications Warehouse

Greene, John A.; Tominaga, Masako; Miller, Nathaniel; Hutchinson, Deborah; Karl, Matthew R.

2017-01-01

To investigate the oceanic lithosphere formation and early seafloor spreading history of the North Atlantic Ocean, we examine multiscale magnetic anomaly data from the Jurassic/Early Cretaceous age Eastern North American Margin (ENAM) between 31 and 40°N. We integrate newly acquired sea surface magnetic anomaly and seismic reflection data with publicly available aeromagnetic and composite magnetic anomaly grids, satellite-derived gravity anomaly, and satellite-derived and shipboard bathymetry data. We evaluate these data sets to (1) refine magnetic anomaly correlations throughout the ENAM and assign updated ages and chron numbers to M0–M25 and eight pre-M25 anomalies; (2) identify five correlatable magnetic anomalies between the East Coast Magnetic Anomaly (ECMA) and Blake Spur Magnetic Anomaly (BSMA), which may document the earliest Atlantic seafloor spreading or synrift magmatism; (3) suggest preexisting margin structure and rifting segmentation may have influenced the seafloor spreading regimes in the Atlantic Jurassic Quiet Zone (JQZ); (4) suggest that, if the BSMA source is oceanic crust, the BSMA may be M series magnetic anomaly M42 (~168.5 Ma); (5) examine the along and across margin variation in seafloor spreading rates and spreading center orientations from the BSMA to M25, suggesting asymmetric crustal accretion accommodated the straightening of the ridge from the bend in the ECMA to the more linear M25; and (6) observe anomalously high-amplitude magnetic anomalies near the Hudson Fan, which may be related to a short-lived propagating rift segment that could have helped accommodate the crustal alignment during the early Atlantic opening.

Percolation analysis of nonlinear structures in scale-free two-dimensional simulations

NASA Technical Reports Server (NTRS)

Dominik, Kurt G.; Shandarin, Sergei F.

1992-01-01

Results are presented of applying percolation analysis to several two-dimensional N-body models which simulate the formation of large-scale structure. Three parameters are estimated: total area (a(c)), total mass (M(C)), and percolation density (rho(c)) of the percolating structure at the percolation threshold for both unsmoothed and smoothed (with different scales L(s)) nonlinear with filamentary structures, confirming early speculations that this type of model has several features of filamentary-type distributions. Also, it is shown that, by properly applying smoothing techniques, many problems previously considered detrimental can be dealt with and overcome. Possible difficulties and prospects with the use of this method are discussed, specifically relating to techniques and methods already applied to CfA deep sky surveys. The success of this test in two dimensions and the potential for extrapolation to three dimensions is also discussed.

Prediction of emission line fluxes of gravitationally lensed very high-z galaxies

NASA Astrophysics Data System (ADS)

Inoue, Akio; Shimizu, Ikkoh; Okamoto, Takashi; Yoshida, Naoki; Matsuo, Hiroshi; Tamura, Yoichi

2015-08-01

Spectroscopic confirmation of very high-z galaxy candidates is extremely valuable because this is a direct proof of the existence of galaxies in the early Universe and put a strong constraint on the structure formation theory to produce such galaxies during the limited age of the Universe. Before the completion of the cosmic reionization, hydrogen Ly-alpha emission line is hard to be observed and we need other emission lines to confirm the redshift of galaxies. By using a state-of-the-art cosmological hydrodynamics simulation of galaxy formation and evolution with an emission line model based on Cloudy, we predict the line fluxes of some gravitationally-lensed very high-z galaxy candidates. We also discuss their detectability with the current and future telescopes.

Formation of silicon nanodots via ion beam sputtering of ultrathin gold thin film coatings on Si

PubMed Central

2011-01-01

Ion beam sputtering of ultrathin film Au coatings used as a physical catalyst for self-organization of Si nanostructures has been achieved by tuning the incident particle energy. This approach holds promise as a scalable nanomanufacturing parallel processing alternative to candidate nanolithography techniques. Structures of 11- to 14-nm Si nanodots are formed with normal incidence low-energy Ar ions of 200 eV and fluences above 2 × 1017 cm-2. In situ surface characterization during ion irradiation elucidates early stage ion mixing migration mechanism for nanodot self-organization. In particular, the evolution from gold film islands to the formation of ion-induced metastable gold silicide followed by pure Si nanodots formed with no need for impurity seeding. PMID:21711934

Luminous Blue Compact Galaxies: Probes of galaxy assembly

NASA Astrophysics Data System (ADS)

Newton, Cassidy Louann

The life cycles of galaxies over cosmic time is yet to be fully understood. How did galaxies evolve from their formative stages to the structures we observe today? This dissertation details the identification and analysis of a sample of Luminous Blue Compact Galaxies (LBCGs), a class of galaxy in the local (z < 0.05) universe exhibiting blue colors, high surface brightness, and high star formation rates. These systems appear to be very similar in their global properties to the early evolutionary phases of most galaxies, however their locality permits detailed investigation over a broad range of the electromagnetic spectrum in contrast to the smaller angular sizes and extreme faintness of distant galaxies. We use a combination of optical, ultraviolet, and infrared data to investigate a sample of LBCGs utilizing space and ground-based data.

Maternal xNorrin, a Canonical Wnt Signaling Agonist and TGF-β Antagonist, Controls Early Neuroectoderm Specification in Xenopus

PubMed Central

Xu, Suhong; Cheng, Feng; Liang, Juan; Wu, Wei; Zhang, Jian

2012-01-01

Dorsal–ventral specification in the amphibian embryo is controlled by β-catenin, whose activation in all dorsal cells is dependent on maternal Wnt11. However, it remains unknown whether other maternally secreted factors contribute to β-catenin activation in the dorsal ectoderm. Here, we show that maternal Xenopus Norrin (xNorrin) promotes anterior neural tissue formation in ventralized embryos. Conversely, when xNorrin function is inhibited, early canonical Wnt signaling in the dorsal ectoderm and the early expression of the zygotic neural inducers Chordin, Noggin, and Xnr3 are severely suppressed, causing the loss of anterior structures. In addition, xNorrin potently inhibits BMP- and Nodal/Activin-related functions through direct binding to the ligands. Moreover, a subset of Norrin mutants identified in humans with Norrie disease retain Wnt activation but show defective inhibition of Nodal/Activin-related signaling in mesoderm induction, suggesting that this disinhibition causes Norrie disease. Thus, xNorrin is an unusual molecule that acts on two major signaling pathways, Wnt and TGF-β, in opposite ways and is essential for early neuroectoderm specification. PMID:22448144

Abnormal Eye Movements in Creutzfeldt-Jakob Disease

NASA Technical Reports Server (NTRS)

Grant, Michael P.; Cohen, Mark; Petersen, Robert B.; Halmagyi, G. Michael; McDougall, Alan; Tusa, Ronald J.; Leigh, R. John

1993-01-01

We report 3 patients with autopsy-proven Creutzfeldt-Jakob disease who, early in their course, developed abnormal eye movements that included periodic alternating nystagmus and slow vertical saccades. These findings suggested involvement of the cerebellar nodulus and uvula, and the brainstem reticular formation, respectively. Cerebellar ataxia was also an early manifestation and, in one patient, a frontal lobe brain biopsy was normal at a time when ocular motor and cerebellar signs were conspicuous. As the disease progressed, all saccades and quick phases of nystagmus were lost, but periodic alternating gaze deviation persisted. At autopsy, 2 of the 3 patients had pronounced involvement of the cerebellum, especially of the midline structures. Creutzfeldt-Jakob disease should be considered in patients with subacute progressive neurological disease when cognitive changes are overshadowed by ocular motor findings or ataxia.

Early Scientific Results and Future Prospects for the Rejuvenated Hubble Space Telescope

NASA Technical Reports Server (NTRS)

Niedner, Malcolm B.

2010-01-01

Following the extraordinarily successful Servicing Mission 4 (SM4) of Hubble Space Telescope (HST) in May of 2009, the Observatory is now fully equipped with a broad array of powerful science instruments that put it at the pinnacle of its scientific power. Relevant to the subject matter of the Beyond 2010 Conference, HST will be well-placed over the next five-plus years to advance our knowledge of the formation of high-redshift galaxies and their growth with cosmic time; the emergence of structure in the early universe via Dark Matter-driven gravitational instability; and the universe's expansion history and any resulting implications for the temporal character of Dark Energy. These are fitting projects for the iconic facility now celebrating its 20th anniversary in orbit.

Organogenesis of heart-vascular system derived from mouse 2 cell stage embryos and from early embryonic stem cells in vitro.

PubMed

Ishiwata, Isamu; Tamagawa, Tomoharu; Tokieda, Yuko; Iguchi, Megumi; Sato, Kahei; Ishikawa, Hiroshi

2003-03-01

Regenerative medical treatment with embryonic stem cells (an ES cell) is a goal for organ transplantation. Structures that are tubular in nature (i.e. blood capillaries) were induced from early embryonic stem (EES) cells in vitro using embryotrophic factor (ETFs). In addition, cardiac muscle cells could be identified as well. However, differentiation of EES cells into a complete cardiovascular system was difficult because 3 germ layer primordial organs are directed embryologically in various ways and it is not possible to guide only cardiovascular organs. Thus, we introduced ETFs after the formation of an embryoid body and were successful in cloning cell clusters that beat, thus deriving only cardiovascular organs. The application of this to the treatment of various cardiovascular diseases is promising.

The interaction of rhinal cortex and hippocampus in human declarative memory formation.

PubMed

Fell, Jürgen; Klaver, Peter; Elger, Christian E; Fernández, Guillén

2002-01-01

Human declarative memory formation crucially depends on processes within the medial temporal lobe (MTL). These processes can be monitored in real-time by recordings from depth electrodes implanted in the MTL of patients with epilepsy who undergo presurgical evaluation. In our studies, patients performed a word memorization task during depth EEG recording. Afterwards, the difference between event-related potentials (ERPs) corresponding to subsequently remembered versus forgotten words was analyzed. These kind of studies revealed that successful memory encoding is characterized by an early process generated by the rhinal cortex within 300 ms following stimulus onset. This rhinal process precedes a hippocampal process, which starts about 200 ms later. Further investigation revealed that the rhinal process seems to be a correlate of semantic preprocessing which supports memory formation, whereas the hippocampal process appears to be a correlate of an exclusively mnemonic operation. These studies yielded only indirect evidence for an interaction of rhinal cortex and hippocampus. Direct evidence for a memory related cooperation between both structures, however, has been found in a study analyzing so called gamma activity, EEG oscillations of around 40 Hz. This investigation showed that successful as opposed to unsuccessful memory formation is accompanied by an initial enhancement of rhinal-hippocampal phase synchronization, which is followed by a later desynchronization. Present knowledge about the function of phase synchronized gamma activity suggests that this phase coupling and decoupling initiates and later terminates communication between the two MTL structures. Phase synchronized rhinal-hippocampal gamma activity may, moreover, accomplish Hebbian synaptic modifications and thus provide an initial step of declarative memory formation on the synaptic level.

Detection of Mutant Huntingtin Aggregation Conformers and Modulation of SDS-Soluble Fibrillar Oligomers by Small Molecules

PubMed Central

Sontag, Emily Mitchell; Lotz, Gregor P.; Yang, Guocheng; Sontag, Christopher J.; Cummings, Brian J.; Glabe, Charles G.; Muchowski, Paul J.; Thompson, Leslie Michels

2012-01-01

The Huntington’s disease (HD) mutation leads to a complex process of Huntingtin (Htt) aggregation into multimeric species that eventually form visible inclusions in cytoplasm, nuclei and neuronal processes. One hypothesis is that smaller, soluble forms of amyloid proteins confer toxic effects and contribute to early cell dysfunction. However, analysis of mutant Htt aggregation intermediates to identify conformers that may represent toxic forms of the protein and represent potential drug targets remains difficult. We performed a detailed analysis of aggregation conformers in multiple in vitro, cell and ex vivo models of HD. Conformation-specific antibodies were used to identify and characterize aggregation species, allowing assessment of multiple conformers present during the aggregation process. Using a series of assays together with these antibodies, several forms could be identified. Fibrillar oligomers, defined as having a β-sheet rich conformation, are observed in vitro using recombinant protein and in protein extracts from cells in culture or mouse brain and shown to be globular, soluble and non-sedimentable structures. Compounds previously described to modulate visible inclusion body formation and reduce toxicity in HD models were also tested and consistently found to alter the formation of fibrillar oligomers. Interestingly, these compounds did not alter the rate of visible inclusion formation, indicating that fibrillar oligomers are not necessarily the rate limiting step of inclusion body formation. Taken together, we provide insights into the structure and formation of mutant Htt fibrillar oligomers that are modulated by small molecules with protective potential in HD models. PMID:24086178

Implications of latest Pennsylvanian to Middle Permian paleontological and U-Pb SHRIMP data from the Tecomate Formation to re-dating tectonothermal events in the Acatlán Complex, Southern Mexico

USGS Publications Warehouse

Keppie, J. Duncan; Sandberg, Charles A.; Miller, B.V.; Sanchez-Zavala, J. L.; Nance, R.D.; Poole, Forrest G.

2004-01-01

Limestones in the highly deformed Tecomate Formation, uppermost unit of the Acatla??n Complex, are latest Pennsylvanian-earliest Middle Permian in age rather than Devonian, the latter based on less diagnostic fossils. Conodont collections from two marble horizons now constrain its age to range from latest Pennsylvanian to latest Early Permian or early Middle Permian. The older collection contains Gondolella sp., Neostreptognathodus sp., and Streptognathodus sp., suggesting an oldest age limit close to the Pennsylvanian-Permian time boundary. The other collection contains Sweet-ognathus subsymmetricus, a short-lived species ranging only from Kungurian (latest Leonardian) to Wordian (earliest Guadelupian: 272 ?? 4 to 264 ?? 2 Ma). A fusilinid, Parafusulina c.f. P. antimonioensis Dunbar, in a third Tecomate marble horizon is probably Wordian (early Guadelupian, early Middle Permian). Furthermore, granite pebbles in a Tecomate conglomerate have yielded ???320-264 Ma U-Pb SHRIMP ages probably derived from the ???288 Ma, arc-related Totoltepec pluton. Collectively, these data suggest a correlation with two nearby units: (1) the Missourian-Leonardian carbonate horizons separated by a Wolfcampian(?) conglomerate in the upper part of the less deformed San Salvador Patlanoaya Formation; and (2) the clastic, Westphalian-Leonardian Matzitzi Formation. This requires that deformation in the Tecomate Formation be of Early-Middle Permian age rather than Devonian. These three formations are re-interpreted as periarc deposits with deformation related to oblique subduction. The revised dating of the Tecomate Formation is consistent with new data, which indicates that the unconformity between the Tecomate and the Piaxtla Group is mid-Carboniferous and corresponds to a tectonothermal event. ?? 2004 by V. H. Winston and Son, Inc. All rights reserved.

Prolonged maternal separation attenuates BDNF-ERK signaling correlated with spine formation in the hippocampus during early brain development.

PubMed

Ohta, Ken-Ichi; Suzuki, Shingo; Warita, Katsuhiko; Kaji, Tomohiro; Kusaka, Takashi; Miki, Takanori

2017-04-01

Maternal separation (MS) is known to affect hippocampal function such as learning and memory, yet the molecular mechanism remains unknown. We hypothesized that these impairments are attributed to abnormities of neural circuit formation by MS, and focused on brain-derived neurotrophic factor (BDNF) as key factor because BDNF signaling has an essential role in synapse formation during early brain development. Using rat offspring exposed to MS for 6 h/day during postnatal days (PD) 2-20, we estimated BDNF signaling in the hippocampus during brain development. Our results show that MS attenuated BDNF expression and activation of extracellular signal-regulated kinase (ERK) around PD 7. Moreover, plasticity-related immediate early genes, which are transcriptionally regulated by BDNF-ERK signaling, were also reduced by MS around PD 7. Interestingly, detailed analysis revealed that MS particularly reduced expression of BDNF gene and immediate early genes in the cornu ammonis 1 (CA1) of hippocampus at PD 7. Considering that BDNF-ERK signaling is involved in spine formation, we next evaluated spine formation in the hippocampus during the weaning period. Our results show that MS particularly reduced mature spine density in proximal apical dendrites of CA1 pyramidal neurons at PD 21. These results suggest that MS could attenuate BDNF-ERK signaling during primary synaptogenesis with a region-specific manner, which is likely to lead to decreased spine formation and maturation observed in the hippocampal CA1 region. It is speculated that this incomplete spine formation during early brain development has an influence on learning capabilities throughout adulthood. © 2017 International Society for Neurochemistry.

Geologic map of the Grand Junction Quadrangle, Mesa County, Colorado

USGS Publications Warehouse

Scott, Robert B.; Carrara, Paul E.; Hood, William C.; Murray, Kyle E.

2002-01-01

This 1:24,000-scale geologic map of the Grand Junction 7.5' quadrangle, in support of the USGS Western Colorado I-70 Corridor Cooperative Geologic Mapping Project, provides new interpretations of the stratigraphy, structure, and geologic hazards in the area of the junction of the Colorado River and the Gunnison River. Bedrock strata include the Upper Cretaceous Mancos Shale through the Lower Jurassic Wingate Sandstone units. Below the Mancos Shale, which floors the Grand Valley, the Upper and Lower(?)Cretaceous Dakota Formation and the Lower Cretaceous Burro Canyon Formation hold up much of the resistant northeast- dipping monocline along the northeast side of the Uncompahgre uplift. The impressive sequence of Jurassic strata below include the Brushy Basin, Salt Wash, and Tidwell Members of the Upper Jurassic Morrison Formation, the Middle Jurassic Wanakah Formation and informal 'board beds' unit and Slick Rock Member of the Entrada Formation, and the Lower Jurassic Kayenta Formation and Wingate Sandstone. The Upper Triassic Chinle Formation and Early Proterozoic meta-igneous gneiss and migmatitic meta- sedimentary rocks, which are exposed in the Colorado National Monument quadrangle to the west, do not crop out here. The monoclinal dip slope of the northeastern margin of the Uncompahgre uplift is apparently a Laramide structural feature. Unlike the southwest-dipping, high-angle reverse faults in the Proterozoic basement and s-shaped fault- propagation folds in the overlying strata found in the Colorado National Monument 7.5' quadrangle along the front of the uplift to the west, the monocline in the map area is unbroken except at two localities. One locality displays a small asymmetrical graben that drops strata to the southwest. This faulted character of the structure dies out to the northwest into an asymmetric fault-propagation fold that also drops strata to the southwest. Probably both parts of this structure are underlain by a northeast-dipping high-angle reverse fault. The other locality displays a second similar asymmetric fold. No evidence of post-Laramide tilting or uplift exists here, but the antecedent Unaweep Canyon, only 30 km to the south-southwest of the map area, provides clear evidence of Late Cenozoic, if not Pleistocene, uplift. The major geologic hazards in the area include large landslides associated with the dip-slope-underlain, smectite-rich Brushy Basin Member of the Morrison Formation and overlying Dakota and Burro Canyon Formations. Active landslides affect the southern bank of the Colorado River where undercutting by the river and smectitic clays in the Mancos trigger landslides. The Wanakah, Morrison, and Dakota Formations and the Mancos Shale create a significant hazard to houses and other structures by containing expansive smectitic clay. In addition to seasonal spring floods associated with the Colorado and Gunnison Rivers, a serious flash flood hazard associated with sudden summer thunderstorms threatens the intermittent washes that drain the dip slope of the monocline.

Epigallocatechin gallate (EGCG) reduces the intensity of pancreatic amyloid fibrils in human islet amyloid polypeptide (hIAPP) transgenic mice.

PubMed

Franko, Andras; Rodriguez Camargo, Diana C; Böddrich, Annett; Garg, Divita; Rodriguez Camargo, Andres; Rathkolb, Birgit; Janik, Dirk; Aichler, Michaela; Feuchtinger, Annette; Neff, Frauke; Fuchs, Helmut; Wanker, Erich E; Reif, Bernd; Häring, Hans-Ulrich; Peter, Andreas; Hrabě de Angelis, Martin

2018-01-18

The formation of amyloid fibrils by human islet amyloid polypeptide protein (hIAPP) has been implicated in pancreas dysfunction and diabetes. However, efficient treatment options to reduce amyloid fibrils in vivo are still lacking. Therefore, we tested the effect of epigallocatechin gallate (EGCG) on fibril formation in vitro and in vivo. To determine the binding of hIAPP and EGCG, in vitro interaction studies were performed. To inhibit amyloid plaque formation in vivo, homozygous (tg/tg), hemizygous (wt/tg), and control mice (wt/wt) were treated with EGCG. EGCG bound to hIAPP in vitro and induced formation of amorphous aggregates instead of amyloid fibrils. Amyloid fibrils were detected in the pancreatic islets of tg/tg mice, which was associated with disrupted islet structure and diabetes. Although pancreatic amyloid fibrils could be detected in wt/tg mice, these animals were non-diabetic. EGCG application decreased amyloid fibril intensity in wt/tg mice, however it was ineffective in tg/tg animals. Our data indicate that EGCG inhibits amyloid fibril formation in vitro and reduces fibril intensity in non-diabetic wt/tg mice. These results demonstrate a possible in vivo effectiveness of EGCG on amyloid formation and suggest an early therapeutical application.

Planetesimal formation in self-gravitating discs - the effects of particle self-gravity and back-reaction

NASA Astrophysics Data System (ADS)

Gibbons, P. G.; Mamatsashvili, G. R.; Rice, W. K. M.

2014-07-01

We study particle dynamics in self-gravitating gaseous discs with a simple cooling law prescription via two-dimensional simulations in the shearing sheet approximation. It is well known that structures arising in the gaseous component of the disc due to a gravitational instability can have a significant effect on the evolution of dust particles. Previous results have shown that spiral density waves can be highly efficient at collecting dust particles, creating significant local overdensities of particles. The degree of such concentrations has been shown to be dependent on two parameters: the size of the dust particles and the rate of gas cooling. We expand on these findings, including the self-gravity of dust particles, to see how these particle overdensities evolve. We use the PENCIL code to solve the local shearing sheet equations for gas on a fixed grid together with the equations of motion for solids coupled to the gas through an aerodynamic drag force. We find that the enhancements in the surface density of particles in spiral density wave crests can reach levels high enough to allow the solid component of the disc to collapse under its own self-gravity. This produces many gravitationally bound collections of particles within the spiral structure. The total mass contained in bound structures appears nearly independent of the cooling time, suggesting that the formation of planetesimals through dust particle trapping by self-gravitating density waves may be possible at a larger range of radii within a disc than previously thought. So, density waves due to gravitational instabilities in the early stages of star formation may provide excellent sites for the rapid formation of many large, planetesimal-sized objects.

Computational Cosmology

NASA Astrophysics Data System (ADS)

Abel, Tom

2013-01-01

Gravitational instability of small density fluctuations, possibly created during an early inflationary period, is the key process leading to the formation of all structure in the Universe. New numerical algorithms have recently enabled much progress in understanding the relevant physical processes dominating the first billion years of structure formation. Computational cosmologists are attempting to simulate on their supercomputers how galaxies come about. In recent years first attempts trying to follow the formation and eventual death of every single star in these model galaxies has become to be within reach. The models now include gravity for both dark matter and baryonic matter, hydrodynamics, follow the radiation from massive stars and its impact in shaping the surrounding material, gas chemistry and all the key radiative atomic and molecular physics determining the thermal state of the model gas. In a small number of cases even the rold of magnetic fields on galactic scales is being studied. At the same time we are learning more about the limitations of certain numerical techniques and developing new schemes to more accurately follow the interplay of these many different physical processes. This talk is in two parts. First we consider a birds eye view of the relevant physical processes relevant for structure formation and potential approaches in solving the relevant equations efficiently and accurately on modern supercomputers. Secondly, we focus in on one of those processes. Namely the intricate and fascinating dynamics of the likely collsionless fluid dynamics of dark matter. A novel way of following the intricate evolution of such collisionless fluids in phase space is allowing us to construct new numerical methods to help understand the nature of dark matter halos as well as problems in astrophysical and terrestial plasmas.

Distributed deformation structures in shallow water carbonates subsiding through a simple stress field (Jandaira Formation, NE Brazil)

NASA Astrophysics Data System (ADS)

Bertotti, Giovanni; Bisdom, Kevin; Bezerra, Hilario; Reijmer, John; Cazarin, Carol

2016-04-01

Despite the scarcity of major deformation structures such as folds and faults, the flat-lying, post-rift shallow water carbonates of the Jandaira Formation (Potiguar Basin, NE Brazil) display well-organized fracture systems distributed of tens of km2. Structures observed in the outcropping carbonates are sub-vertical, generally N-S trending mode I and hybrid veins and barren fractures, sub-vertical roughly E-W trending stylolites and sub-horizontal stylolites. These features developed during subsidence in a simple and constant stress field characterized by, beside gravity, a significant horizontal stress probably of tectonic origin. The corresponding depth curves have different origin and slopes and, therefore, cross each other resulting in position of the principal stresses which change with depth. As a result, the type and amount of fractures affecting subsiding rocks change despite the fact that the far-field stresses remain constant. Following early diagenesis and porosity elimination in the first 100-200m depth, Jandaira carbonates experienced wholesale fracturing at depths of 400-800m resulting in a network of NNW-NE trending fractures partly organized in conjugate sets with a low interfault angle and a sub-vertical intersection, and sub-vertical stylolites roughly perpendicular to the fractures. Intense fluid circulation was activated as a consequence through the carbonates. With increasing subsidence, sub-horizontal stylolites formed providing calcite which precipitated in the open fractures transforming them in veins. The Jandaira formation lost thereby the permeability it had reached during the previous stage. Because of the lack of major deformation, the outcrops of the Jandaira Formation is an excellent analog for carbonate reservoirs in the Middle East, South Atlantic and elsewhere.

Pleistocene Brawley and Ocotillo Formations: Evidence for initial strike-slip deformation along the San Felipe and San Jacinto fault zonez, Southern California

USGS Publications Warehouse

Kirby, S.M.; Janecke, S.U.; Dorsey, R.J.; Housen, B.A.; Langenheim, V.E.; McDougall, K.A.; Steeley, A.N.

2007-01-01

We examine the Pleistocene tectonic reorganization of the Pacific-North American plate boundary in the Salton Trough of southern California with an integrated approach that includes basin analysis, magnetostratigraphy, and geologic mapping of upper Pliocene to Pleistocene sedimentary rocks in the San Felipe Hills. These deposits preserve the earliest sedimentary record of movement on the San Felipe and San Jacinto fault zones that replaced and deactivated the late Cenozoic West Salton detachment fault. Sandstone and mudstone of the Brawley Formation accumulated between ???1.1 and ???0.6-0.5 Ma in a delta on the margin of an arid Pleistocene lake, which received sediment from alluvial fans of the Ocotillo Formation to the west-southwest. Our analysis indicates that the Ocotillo and Brawley formations prograded abruptly to the east-northeast across a former mud-dominated perennial lake (Borrego Formation) at ???1.1 Ma in response to initiation of the dextral-oblique San Felipe fault zone. The ???25-km-long San Felipe anticline initiated at about the same time and produced an intrabasinal basement-cored high within the San Felipe-Borrego basin that is recorded by progressive unconformities on its north and south limbs. A disconformity at the base of the Brawley Formation in the eastern San Felipe Hills probably records initiation and early blind slip at the southeast tip of the Clark strand of the San Jacinto fault zone. Our data are consistent with abrupt and nearly synchronous inception of the San Jacinto and San Felipe fault zones southwest of the southern San Andreas fault in the early Pleistocene during a pronounced southwestward broadening of the San Andreas fault zone. The current contractional geometry of the San Jacinto fault zone developed after ???0.5-0.6 Ma during a second, less significant change in structural style. ?? 2007 by The University of Chicago. All rights reserved.

Recovery and diversification of marine communities following the late Permian mass extinction event in the western Palaeotethys

NASA Astrophysics Data System (ADS)

Foster, William J.; Sebe, Krisztina

2017-08-01

The recovery of benthic invertebrates following the late Permian mass extinction event is often described as occurring in the Middle Triassic associated with the return of Early Triassic Lazarus taxa, increased body sizes, platform margin metazoan reefs, and increased tiering. Most quantitative palaeoecological studies, however, are limited to the Early Triassic and the timing of the final phase of recovery is rarely quantified. Here, quantitative abundance data of benthic invertebrates were collected from the Middle Triassic (Anisian) succession of the Mecsek Mountains (Hungary), and analysed with univariate and multivariate statistics to investigate the timing of recovery following the late Permian mass extinction. These communities lived in a mixed siliciclastic-carbonate ramp setting on the western margin of the Palaeotethys Ocean. The new data presented here is combined with the previously studied Lower Triassic succession of the Aggtelek Karst (Hungary), which records deposition of comparable facies and in the same region of the Palaeotethys Ocean. The Middle Triassic benthic fauna can be characterised by three distinct ecological states. The first state is recorded in the Viganvár Limestone Formation representing mollusc-dominated communities restricted to above wave base, which are comparable to the lower and mid-Spathian Szin Marl Formation faunas. The second state is recorded in the Lapis Limestone Formation and records extensive bioturbation that is not limited to wave base and is comparable to the upper Spathian Szinpetri Limestone Formation. The third ecological state occurs in the Zuhánya Limestone Formation which was deposited in the Pelsonian Binodosus Zone, and has a more 'Palaeozoic' structure with sessile brachiopods dominating assemblages for the first time in the Mesozoic. The return of community-level characteristics to pre-extinction levels and the diversification of invertebrates suggests that the final stages of recovery and the radiation of the benthos in ramp settings following the late Permian mass extinction occurred in the upper Pelsonian Zuhánya Limestone Formation, approximately 8 million years after the extinction event.

Expression and Function of Xmsx-2B in Dorso-Ventral Axis Formation in Gastrula Embryos.

PubMed

Onitsuka, I; Takeda, M; Maéno, M

2000-11-01

Msx is a homeodomain-containing transcriptional factor that plays an essential role in pattern formation in vertebrata and invertebrata embryos. In Xenopus laevis, two msx genes have been identified (Xmsx-1 and Xmsx-2). In the present study, we attempted to elucidate the expression and function of Xmsx-2B (formerly designated as Xhox7.1') in early embryogenesis. Whole mount in situ hybridization analyses showed that the expression pattern of Xmsx-2B at gastrula and neurula stages was very similar to that of Xmsx-1: the transcript of Xmsx-2B was observed in ventral and lateral sides of the embryo. At the tailbud stage, however, the expression pattern of Xmsx-2B in neural tissues was distinct from that of Xmsx-1. An RNA injection experiment revealed that, like BMP-4, Xmsx-2B has a strong ventralizing activity. In the Xmsx-2B -injected embryos, differentiation of axial structures such as the notochord, muscle, and neural tissue was completely suppressed, whereas alpha-globin mRNA, a blood cell marker, was highly expressed. Simultaneous injection of Xmsx-1 and Xmsx-2B RNAs showed that they function in an additive manner. It was also shown that coinjection of Xmsx-2B with a dominant-negative BMP-4 receptor (tBR), which can induce formation of secondary axis when injected alone in ventral blastomeres, suppressed secondary axis formation. Furthermore, Xmsx-2B also suppressed secondary axis formation, which was induced by a dominant-negative form of Xmsx-1 (VP16/msx-1). Therefore, like Xmsx-1, Xmsx-2B is a downstream nuclear factor of the BMP-4-derived ventralizing signal, and these two factors probably share the same target molecules. In conclusion, Xmsx-1 and Xmsx-2B function in dorso-ventral axis formation in early Xenopus laevis development.

Dolomite Formation within Microbial Mats in the Sabkha of Abu Dhabi (UAE) and Associated Microsedimentary Structures

NASA Astrophysics Data System (ADS)

Bontognali, T. R.; Vasconcelos, C.; McKenzie, J. A.

2008-12-01

The link between microbial activity and dolomite formation has been evaluated in the coastal sabkha of Abu Dhabi (UAE). This modern dolomite-forming environment is frequently cited as the type analogue for the interpretation of many ancient evaporitic sequences. The investigation of sabkha sediments along a transect from intertidal to supratidal zones revealed a close association between microbial mats and dolomite. Authigenic dolomite occurs within surface and buried microbial mats, which are comprised of exopolymeric substances (EPS). Dolomite forms as a direct consequence of mineral nucleation and growth within microbially produced EPS. The cation-binding effect of the EPS molecules influences the composition of the precipitate. The early stage of this process is characterized by the complexation of an amorphous Mg-Si precipitate, which promotes dolomite development. Mineral formation within EPS appears to be enhanced by evaporation with consequent supersaturation of the pore waters with respect to dolomite. Partial EPS degradation during diagenesis may also provide an additional source of cations. However, the specific mineral-template property of EPS, rather than an increase in cation concentrations, is the key factor for dolomite formation in the studied area of the sabkha. Indeed, within the modern microbial mat located at the surface, dolomite precipitates from pore waters whose composition is very close to seawater. In the supratidal zone, pore water analysis and stable isotope values did not reveal any linkage between dolomite formation and microbial excretion and/or consumption of metabolites along the sediment profiles. This is in contrast with current models, in which dolomite formation is mainly linked to microbial increase of pH and alkalinity or consumption of dissolved SO4 in pore-waters. The EPS of the microbial mats is characterized by an alveolar microfabric, which can be mineralized during early diagenesis, preserving fossil imprints of the original biofilm. Recognition of this biostructure, combined with the atypical Mg-Si phase, may be used to interpret ancient microbial dolomite throughout the geological record.

Trans-Golgi network localized small GTPase RabA1d is involved in cell plate formation and oscillatory root hair growth.

PubMed

Berson, Tobias; von Wangenheim, Daniel; Takáč, Tomáš; Šamajová, Olga; Rosero, Amparo; Ovečka, Miroslav; Komis, George; Stelzer, Ernst H K; Šamaj, Jozef

2014-09-27

Small Rab GTPases are important regulators of vesicular trafficking in plants. AtRabA1d, a member of the RabA1 subfamily of small GTPases, was previously found in the vesicle-rich apical dome of growing root hairs suggesting a role during tip growth; however, its specific intracellular localization and role in plants has not been well described. The transient expression of 35S::GFP:RabA1d construct in Allium porrum and Nicotiana benthamiana revealed vesicular structures, which were further corroborated in stable transformed Arabidopsis thaliana plants. GFP-RabA1d colocalized with the trans-Golgi network marker mCherry-VTI12 and with early FM4-64-labeled endosomal compartments. Late endosomes and endoplasmic reticulum labeled with FYVE-DsRed and ER-DsRed, respectively, were devoid of GFP-RabA1d. The accumulation of GFP-RabA1d in the core of brefeldin A (BFA)-induced-compartments and the quantitative upregulation of RabA1d protein levels after BFA treatment confirmed the association of RabA1d with early endosomes/TGN and its role in vesicle trafficking. Light-sheet microscopy revealed involvement of RabA1d in root development. In root cells, GFP-RabA1d followed cell plate expansion consistently with cytokinesis-related vesicular trafficking and membrane recycling. GFP-RabA1d accumulated in disc-like structures of nascent cell plates, which progressively evolved to marginal ring-like structures of the growing cell plates. During root hair growth and development, GFP-RabA1d was enriched at root hair bulges and at the apical dome of vigorously elongating root hairs. Importantly, GFP-RabA1d signal intensity exhibited an oscillatory behavior in-phase with tip growth. Progressively, this tip localization dissapeared in mature root hairs suggesting a link between tip localization of RabA1d and root hair elongation. Our results support a RabA1d role in events that require vigorous membrane trafficking. RabA1d is located in early endosomes/TGN and is involved in vesicle trafficking. RabA1d participates in both cell plate formation and root hair oscillatory tip growth. The specific GFP-RabA1d subcellular localization confirms a correlation between its specific spatio-temporal accumulation and local vesicle trafficking requirements during cell plate and root hair formation.

Changing the game: exploring infants' participation in early play routines

PubMed Central

Fantasia, Valentina; Fasulo, Alessandra; Costall, Alan; López, Beatriz

2014-01-01

Play has proved to have a central role in children's development, most notably in rule learning (Piaget, 1965; Sutton-Smith, 1979) and negotiation of roles and goals (Garvey, 1974; Bruner et al., 1976). Yet very little research has been done on early play. The present study focuses on early social games, i.e., vocal-kinetic play routines that mothers use to interact with infants from very early on. We explored 3-month-old infants and their mothers performing a routine game first in the usual way, then in two violated conditions: without gestures and without sound. The aim of the study is to investigate infants' participation and expectations in the game and whether this participation is affected by changes in the multimodal format of the game. Infants' facial expressions, gaze, and body movements were coded to measure levels of engagement and affective state across the three conditions. Results showed a significant decrease in Limbs Movements and expressions of Positive Affect, an increase in Gaze Away and in Stunned Expression when the game structure was violated. These results indicate that the violated game conditions were experienced as less engaging, either because of an unexpected break in the established joint routine, or simply because they were weaker versions of the same game. Overall, our results suggest that structured, multimodal play routines may constitute interactional contexts that only work as integrated units of auditory and motor resources, representing early communicative contexts which prepare the ground for later, more complex multimodal interactions, such as verbal exchanges. PMID:24936192

The role of microbial iron reduction in the formation of Proterozoic molar tooth structures

NASA Astrophysics Data System (ADS)

Hodgskiss, Malcolm S. W.; Kunzmann, Marcus; Poirier, André; Halverson, Galen P.

2018-01-01

Molar tooth structures are poorly understood early diagenetic, microspar-filled voids in clay-rich carbonate sediments. They are a common structure in sedimentary successions dating from 2600-720 Ma, but do not occur in rocks older or younger, with the exception of two isolated Ediacaran occurrences. Despite being locally volumetrically significant in carbonate rocks of this age, their formation and disappearance in the geological record remain enigmatic. Here we present iron isotope data, supported by carbon and oxygen isotopes, major and minor element concentrations, and total organic carbon and sulphur contents for 87 samples from units in ten different basins spanning ca. 1900-635 Ma. The iron isotope composition of molar tooth structures is almost always lighter (modal depletion of 2‰) than the carbonate or residue components in the host sediment. We interpret the isotopically light iron in molar tooth structures to have been produced by dissimilatory iron reduction utilising Fe-rich smectites and Fe-oxyhydroxides in the upper sediment column. The microbial conversion of smectite to illite results in a volume reduction of clay minerals (∼30%) while simultaneously increasing pore water alkalinity. When coupled with wave loading, this biogeochemical process is a viable mechanism to produce voids and subsequently precipitate carbonate minerals. The disappearance of molar tooth structures in the mid-Neoproterozoic is likely linked to a combination of a decrease in smectite abundance, a decline in the marine DIC reservoir, and an increase in the concentration of O2 in shallow seawater.

Southern Ocean frontal structure and sea-ice formation rates revealed by elephant seals

PubMed Central

Charrassin, J.-B.; Hindell, M.; Rintoul, S. R.; Roquet, F.; Sokolov, S.; Biuw, M.; Costa, D.; Boehme, L.; Lovell, P.; Coleman, R.; Timmermann, R.; Meijers, A.; Meredith, M.; Park, Y.-H.; Bailleul, F.; Goebel, M.; Tremblay, Y.; Bost, C.-A.; McMahon, C. R.; Field, I. C.; Fedak, M. A.; Guinet, C.

2008-01-01

Polar regions are particularly sensitive to climate change, with the potential for significant feedbacks between ocean circulation, sea ice, and the ocean carbon cycle. However, the difficulty in obtaining in situ data means that our ability to detect and interpret change is very limited, especially in the Southern Ocean, where the ocean beneath the sea ice remains almost entirely unobserved and the rate of sea-ice formation is poorly known. Here, we show that southern elephant seals (Mirounga leonina) equipped with oceanographic sensors can measure ocean structure and water mass changes in regions and seasons rarely observed with traditional oceanographic platforms. In particular, seals provided a 30-fold increase in hydrographic profiles from the sea-ice zone, allowing the major fronts to be mapped south of 60°S and sea-ice formation rates to be inferred from changes in upper ocean salinity. Sea-ice production rates peaked in early winter (April–May) during the rapid northward expansion of the pack ice and declined by a factor of 2 to 3 between May and August, in agreement with a three-dimensional coupled ocean–sea-ice model. By measuring the high-latitude ocean during winter, elephant seals fill a “blind spot” in our sampling coverage, enabling the establishment of a truly global ocean-observing system. PMID:18695241

Hippocampal multimodal structural changes and subclinical depression in healthy individuals.

PubMed

Spalletta, Gianfranco; Piras, Fabrizio; Caltagirone, Carlo; Fagioli, Sabrina

2014-01-01

Several neuroimaging studies report reduced hippocampal volume in depressed patients. However, it is still unclear if hippocampal changes in healthy individuals can be considered a risk factor for progression to clinical depression. Here, we investigated subclinical depression and its hippocampal correlates in a non-clinical sample of healthy individuals, with particular regard to gender differences. One-hundred-two participants underwent a comprehensive clinical assessment, a high-resolution T1-weighted magnetic resonance imaging and diffusion tensor imaging protocol using a 3T MRI scanner. Data of macro-(volume) and micro-(mean diffusivity, MD) structural changes of the hippocampus were analyzed with reference to the Beck Depression Inventory score. Results of multivariate regression analyses revealed reduced bilateral volume, along with increased bilateral MD in hippocampal formation predicting subclinical depressive phenomenology only in healthy males. Conversely, subclinical depressive phenomenology in healthy female was accounted for by only lower educational level, in the absence of any hippocampal structure variations. To date, this is the only evidence reporting a relationship between subclinical depressive phenomenology and changes in hippocampal formation in healthy individuals. Our findings demonstrated that reduced volume, along with increased MD in hippocampal formation, is significantly associated with subclinical depressive phenomenology in healthy males. This encourages to study the hypothesis that early macro- and microstructural changes in hippocampi associated with subclinical depression may constitute a risk factor of developing depressive disorders in males. © 2013 Elsevier B.V. All rights reserved.

Interface structure in nanoscale multilayers near continuous-to-discontinuous regime

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pradhan, P. C.; Majhi, A.; Nayak, M., E-mail: mnayak@rrcat.gov.in

2016-07-28

Interfacial atomic diffusion, reaction, and formation of microstructure in nanoscale level are investigated in W/B{sub 4}C multilayer (ML) system as functions of thickness in ultrathin limit. Hard x-ray reflectivity (XRR) and x-ray diffuse scattering in conjunction with x-ray absorption near edge spectroscopy (XANES) in soft x-ray and hard x-ray regimes and depth profiling x-ray photoelectron spectroscopy (XPS) have been used to precisely evaluate detailed interfacial structure by systematically varying the individual layer thickness from continuous-to-discontinuous regime. It is observed that the interfacial morphology undergoes an unexpected significant modification as the layer thickness varies from continuous-to-discontinuous regime. The interfacial atomic diffusionmore » increases, the physical density of W layer decreases and that of B{sub 4}C layer increases, and further more interestingly the in-plane correlation length decreases substantially as the layer thickness varies from continuous-to-discontinuous regime. This is corroborated using combined XRR and x-ray diffused scattering analysis. XANES and XPS results show formation of more and more tungsten compounds at the interfaces as the layer thickness decreases below the percolation threshold due to increase in the contact area between the elements. The formation of compound enhances to minimize certain degree of disorder at the interfaces in the discontinuous region that enables to maintain the periodic structure in ML. The degree of interfacial atomic diffusion, interlayer interaction, and microstructure is correlated as a function of layer thickness during early stage of film growth.« less

Performance evaluation of the UV/H2O2 process on selected nitrogenous organic compounds: reductions of organic contents vs. corresponding C-, N-DBPs formations.

PubMed

Chen, Huei-Wen; Chen, Chia-Yang; Wang, Gen-Shuh

2011-10-01

The presence of various organic contaminants in water sources is of concern due to their direct threats to human health and potential to react with disinfectants to form carcinogenic byproducts including trihalomethanes, haloacetic acids and nitrosamines in finished water. This study applied both medium-pressure and low-pressure ultraviolet light coupled with hydrogen peroxide (UV/H2O2) to evaluate its efficacy for degradation of selected nitrogenous organic compounds and corresponding disinfection byproduct (DBP) formation. Six organic compounds were chosen as target precursors based on their nitrogen contents and molecular structures. The results showed that higher oxidation capacity resulted in better reduction of organic matters and DBP formation potentials (DBPFPs). However, insufficient contact time and oxidant doses could lead to a rise of DBPFPs in the early stages of UV/H2O2 reactions. A greater percentage removal was achieved for organic carbon than organic nitrogen after UV/H2O2 treatment, especially for compounds with complicated structure such as diltiazem. During the UV/H2O2 treatment, the intermediate products include tertiary amine, dimethyl amine (DMA) or DMA-like structures, which are N-nitrosodimethylamine (NDMA) precursors after chlorination or chloramination. Furthermore, it was observed that using dissolved organic nitrogen and DMA to predict NDMAFP could lead to biased conclusions because of the complex nature of nitrogenous matters in aqueous environments. Copyright © 2011 Elsevier Ltd. All rights reserved.

Mountains on Io: High-resolution Galileo observations, initial interpretations, and formation models

USGS Publications Warehouse

Turtle, E.P.; Jaeger, W.L.; Keszthelyi, L.P.; McEwen, A.S.; Milazzo, M.; Moore, J.; Phillips, C.B.; Radebaugh, J.; Simonelli, D.; Chuang, F.; Schuster, P.; Alexander, D.D.A.; Capraro, K.; Chang, S.-H.; Chen, A.C.; Clark, J.; Conner, D.L.; Culver, A.; Handley, T.H.; Jensen, D.N.; Knight, D.D.; LaVoie, S.K.; McAuley, M.; Mego, V.; Montoya, O.; Mortensen, H.B.; Noland, S.J.; Patel, R.R.; Pauro, T.M.; Stanley, C.L.; Steinwand, D.J.; Thaller, T.F.; Woncik, P.J.; Yagi, G.M.; Yoshimizu, J.R.; Alvarez Del Castillo, E.M.; Beyer, R.; Branston, D.; Fishburn, M.B.; Muller, Birgit; Ragan, R.; Samarasinha, N.; Anger, C.D.; Cunningham, C.; Little, B.; Arriola, S.; Carr, M.H.; Asphaug, E.; Morrison, D.; Rages, K.; Banfield, D.; Bell, M.; Burns, J.A.; Carcich, B.; Clark, B.; Currier, N.; Dauber, I.; Gierasch, P.J.; Helfenstein, P.; Mann, M.; Othman, O.; Rossier, L.; Solomon, N.; Sullivan, R.; Thomas, P.C.; Veverka, J.; Becker, T.; Edwards, K.; Gaddis, L.; Kirk, R.; Lee, E.; Rosanova, T.; Sucharski, R.M.; Beebe, R.F.; Simon, A.; Belton, M.J.S.; Bender, K.; Fagents, S.; Figueredo, P.; Greeley, R.; Homan, K.; Kadel, S.; Kerr, J.; Klemaszewski, J.; Lo, E.; Schwarz, W.; Williams, D.; Williams, K.; Bierhaus, B.; Brooks, S.; Chapman, C.R.; Merline, B.; Keller, J.; Tamblyn, P.; Bouchez, A.; Dyundian, U.; Ingersoll, A.P.; Showman, A.; Spitale, J.; Stewart, S.; Vasavada, A.; Breneman, H.H.; Cunningham, W.F.; Johnson, T.V.; Jones, T.J.; Kaufman, J.M.; Klaasen, K.P.; Levanas, G.; Magee, K.P.; Meredith, M.K.; Orton, G.S.; Senske, D.A.; West, A.; Winther, D.; Collins, G.; Fripp, W.J.; Head, J. W.; Pappalardo, R.; Pratt, S.; Prockter, L.; Spaun, N.; Colvin, T.; Davies, M.; DeJong, E.M.; Hall, J.; Suzuki, S.; Gorjian, Z.; Denk, T.; Giese, B.; Koehler, U.; Neukum, G.; Oberst, J.; Roatsch, T.; Tost, W.; Wagner, R.; Dieter, N.; Durda, D.; Geissler, P.; Greenberg, R.J.; Hoppa, G.; Plassman, J.; Tufts, R.; Fanale, F.P.; Granahan, J.C.

2001-01-01

During three close flybys in late 1999 and early 2000 the Galileo spacecraft ac-quired new observations of the mountains that tower above Io's surface. These images have revealed surprising variety in the mountains' morphologies. They range from jagged peaks several kilometers high to lower, rounded structures. Some are very smooth, others are covered by numerous parallel ridges. Many mountains have margins that are collapsing outward in large landslides or series of slump blocks, but a few have steep, scalloped scarps. From these observations we can gain insight into the structure and material properties of Io's crust as well as into the erosional processes acting on Io. We have also investigated formation mechanisms proposed for these structures using finite-element analysis. Mountain formation might be initiated by global compression due to the high rate of global subsidence associated with Io's high resurfacing rate; however, our models demonstrate that this hypothesis lacks a mechanism for isolating the mountains. The large fraction (???40%) of mountains that are associated with paterae suggests that in some cases these features are tectonically related. Therefore we have also simulated the stresses induced in Io's crust by a combination of a thermal upwelling in the mantle with global lithospheric compression and have shown that this can focus compressional stresses. If this mechanism is responsible for some of Io's mountains, it could also explain the common association of mountains with paterae. Copyright 2001 by the American Geophysical Union.

Basin analysis of tertiary strata in the Pattani Basin, Gulf of Thailand

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chonchawalit, A.; Bustin, R.M.

The stratigraphic and structural evolution of the Pattani basin, the most prolific petroleum basin in Thailand, reflects the extensional tectonics of continental southeast Asia. East-west extension, a product of the northward collision of India with Eurasia since the early Tertiary resulted in the formation of a series of north-south-trending sedimentary basins including the Pattani basin. Subsidence and thermal histories of the basin can generally be accounted for by nonuniform lithospheric stretching. The validity of nonuniform lithospheric stretching as a mechanic for the formation of the Pattani basin is confirmed by a reasonably good agreement between modeled and observed vitrinite reflectancemore » at various depths and locations. The amount of stretching and surface heat flow generally increases from the basin margin to the basin center. Crustal stretching factor ([beta]) ranges from 1.3 at the basin margin to 2.8 in the center. Subcrustal stretching factor ([sigma]) ranges from 1.3 at the margin to more than 3.0 in the center. The stretching of the lithosphere may have extended basement rocks as much as 45 to 90 km and may have caused the upwelling of asthenosphere, resulting in high heat flow. The sedimentary succession in the Pattani basin is divisible into synrift and postrift sequences. The synrift sequences comprise (1) late Eocene ( ) to early Oligocene alluvial fan, braided river, and flood-plain deposits; (2) late Oligocene to early Miocene floodplain and channel deposits; and (3) an early Miocene regressive package of marine to nonmarine sediments. Deposition of synrift sequences corresponded to rifting and extension, which included episodic block faulting and rapid subsidence. Postrift succession comprises (1) an early to middle Miocene regressive package of shallow marine to nonmarine sediments, (2) a late early Miocene transgressive package; and (3) a late Miocene to Pleistocene transgression succession.« less

Oman metamorphic sole formation reveals early subduction dynamics

NASA Astrophysics Data System (ADS)

Soret, Mathieu; Agard, Philippe; Dubacq, Benoît; Plunder, Alexis; Ildefonse, Benoît; Yamato, Philippe; Prigent, Cécile

2016-04-01

Metamorphic soles correspond to m to ~500m thick tectonic slices welded beneath most of the large-scale ophiolites. They typically show a steep inverted metamorphic structure where the pressure and temperature conditions of crystallization increase upward (from 500±100°C at 0.5±0.2 GPa to 800±100°C at 1.0±0.2 GPa), with isograds subparallel to the contact with the overlying ophiolitic peridotite. The proportion of mafic rocks in metamorphic soles also increases from the bottom (meta-sediments rich) to the top (approaching the ophiolite peridotites). These soles are interpreted as the result of heat transfer from the incipient mantle wedge toward the nascent slab (associated with large-scale fluid transfer and possible shear heating) during the first My of intra-oceanic subduction (as indicated by radiometric ages). Metamorphic soles provide therefore major constraints on early subduction dynamics (i.e., thermal structure, fluid migration and rheology along the nascent slab interface). We present a detailed structural and petrological study of the metamorphic sole from 4 major cross-sections along the Oman ophiolite. We show precise pressure-temperature estimates obtained by pseudosection modelling and EBSD measurements performed on both the garnet-bearing and garnet-free high-grade sole. Results allow quantification of the micro-scale deformation and highlight differences in pressure-temperature-deformation conditions between the 4 different locations, showing that the inverted metamorphic gradient through the sole is not continuous in all locations. Based on these new constraints, we suggest a new tectonic-petrological model for the formation of metamorphic soles below ophiolites. This model involves the stacking of several homogeneous slivers of oceanic crust leading to the present-day structure of the sole. In this view, these thrusts are the result of rheological contrasts between the sole and the peridotite as the plate interface progressively cools down. These slivers later underwent several stages of retrogression (partly mediated by ascending fluids from the slab) from amphibolite- to prehnite/pumpellite-facies conditions.

Amyloid β (1-40) Toxicity Depends on the Molecular Contact between Phenylalanine 19 and Leucine 34.

PubMed

Korn, Alexander; McLennan, Steffane; Adler, Juliane; Krueger, Martin; Surendran, Dayana; Maiti, Sudipta; Huster, Daniel

2018-04-18

The formation of the hydrophobic contact between phenylalanine 19 (F19) and leucine 34 (L34) of amyloid β (1-40) (Aβ(1-40)) is known to be an important step in the fibrillation of Aβ(1-40) peptides. Mutations of this putatively early molecular contact were shown to strongly influence the toxicity of Aβ(1-40) ( Das et al. ( 2015 ) ACS Chem. Neurosci. 6 , 1290 - 1295 ). Any mutation of residue F19 completely abolished the toxicity of Aβ(1-40), suggesting that a proper F19-L34 contact is crucial also for the formation of transient oligomers. In this work, we investigate a series of isomeric substitutions of L34, namely, d-leucine, isoleucine, and valine, to study further details of this molecular contact. These replacements represent very minor alterations in the Aβ(1-40) structure posing the question how these alterations challenge the fibrillation kinetics, structure, dynamics, and toxicity of the Aβ(1-40) aggregates. Our work involves kinetic studies using thioflavin T, transmission electron microscopy, X-ray diffraction for the analysis of the fibril morphology, and nuclear magnetic resonance experiments for local structure and molecular dynamics investigations. Combined with cell toxicity assays of the mutated Aβ(1-40) peptides, the physicochemical and biological importance of the early folding contact between F19 and L34 in Aβ(1-40) is underlined. This implies that the F19-L34 contact influences a broad range of different processes including the initiation of fibrillation, oligomer stability, fibril elongation, local fibril structure, and dynamics and cellular toxicity. These processes do not only cover a broad range of diverse mechanisms, but also proved to be highly sensitive to minor modulations of this crucial contact. Furthermore, our work shows that the contact is not simply mediated by general hydrophobic interactions, but also depends on stereospecific mechanisms.

Cenozoic structural inversion from transtension to transpression in Yingxiong Range, western Qaidam Basin: New insights into strike-slip superimposition controlled by Altyn Tagh and Eastern Kunlun Faults

NASA Astrophysics Data System (ADS)

Cheng, Xiang; Zhang, Daowei; Jolivet, Marc; Yu, Xiangjiang; Du, Wei; Liu, Runchao; Guo, Zhaojie

2018-01-01

A Cenozoic structural inversion event from transtension to transpression involving salt tectonics has been uncovered in the Yingxiong Range, the western Qaidam Basin. Seismic reflection data show that there are two common structural styles in the Yingxiong Range: (1) the positive flower structure; (2) the thrust-controlled fold at shallow depth and the positive inverted flower structure at deep levels, which are separated by a salt layer in the upper Xiaganchaigou Formation. The Yingxiong Range experienced a first stage of transtension in the Eocene, induced by the Altyn Tagh Fault, and a second stage of transpression from the early Miocene to present, jointly controlled by the Altyn Tagh and Eastern Kunlun Faults. The Eocene transtension produced numerous NW-striking right-stepping en-échelon transtensional normal faults or fractures in the Yingxiong Range. At the same time, evaporites and mudstone were deposited in the vicinity of these faults. In the early Miocene, the Eocene transtensional normal faults were reactivated in a reverse sense, and the thrust-controlled folds at shallow depth started to form simultaneously. With transpression enhanced in the late Cenozoic, positive flower structures directly formed in places without evaporites. The Cenozoic transtension to transpression inversion of the Yingxiong Range is the result of strike-slip superimposition controlled by the Altyn Tagh and Eastern Kunlun Faults in time and space.

Evolution of the Inca City region of Mars during southern spring.

NASA Astrophysics Data System (ADS)

Thomas, Nicolas; Hansen, Candice; Bridges, Nathan; McEwen, Alfred; Herkenhoff, Ken; Russell, Patrick

MOC and THEMIS observations of the southern seasonal polar cap of Mars have provided evidence of the existence of venting from the sub-surface during early southern spring. Kieffer [JGR, 112, E08005, 2007] has presented a general model of the venting process. He emphasized, however, that regional variability of jet/geyser formation remains poorly understood. In this work we choose to investigate one specific region, namely the "Inca City" region of the seasonal polar cap (295.8E, 81.4S), using a time series of observations acquired by the High Resolution Imaging Sciences Experiment (HiRISE) onboard Mars Reconnaissance Orbiter. The Inca City area shows a wide variety of different phenomena. For example, many dark fans appear on the surface within 5 weeks of the time when sunlight first reaches this southern latitude. Most fans appear to be consistent with the concept of geyser formation with subsequent airfall of dark material (as described by Kieffer). We can, however, identify some fan structures within this region which appear to suggest near-surface flow. We also find that the directions of many observed fans follow the local topography. We suggest mechanisms by which this might occur. We also investigate the surface structures in this specific region and study their evolution through southern spring. We find, for example, that so-called "spiders" can be aligned in rows (possibly in response to local topography). We also observe variability in the structure of spiders which may indicate changes in local topography or in the local substrate over short length scales. On relatively steep slopes, fans can be observed although there is no obvious spider formation. At the end of spring, sloped surfaces becomes homogeneous in colour and brightness as the fan material coats the entire downslope surface. In early spring we also observe rocks with dark rings surrounding them which might be thought to indicate activity/venting. However, most of these do not evolve over time. Their nature is still unclear. As Kieffer pointed out, there is great variety in the details. The presentation will provide an overview of the observational data and will suggest some interpretations.

Measuring hemodynamics in the developing heart tube with four-dimensional gated Doppler optical coherence tomography

NASA Astrophysics Data System (ADS)

Jenkins, Michael W.; Peterson, Lindsy; Gu, Shi; Gargesha, Madhusudhana; Wilson, David L.; Watanabe, Michiko; Rollins, Andrew M.

2010-11-01

Hemodynamics is thought to play a major role in heart development, yet tools to quantitatively assess hemodynamics in the embryo are sorely lacking. The especially challenging analysis of hemodynamics in the early embryo requires new technology. Small changes in blood flow could indicate when anomalies are initiated even before structural changes can be detected. Furthermore, small changes in the early embryo that affect blood flow could lead to profound abnormalities at later stages. We present a demonstration of 4-D Doppler optical coherence tomography (OCT) imaging of structure and flow, and present several new hemodynamic measurements on embryonic avian hearts at early stages prior to the formation of the four chambers. Using 4-D data, pulsed Doppler measurements could accurately be attained in the inflow and outflow of the heart tube. Also, by employing an en-face slice from the 4-D Doppler image set, measurements of stroke volume and cardiac output are obtained without the need to determine absolute velocity. Finally, an image plane orthogonal to the blood flow is used to determine shear stress by calculating the velocity gradient normal to the endocardium. Hemodynamic measurements will be crucial to identifying genetic and environmental factors that lead to congenital heart defects.

A New Chytridiomycete Fungus Intermixed with Crustacean Resting Eggs in a 407-Million-Year-Old Continental Freshwater Environment

PubMed Central

Goral, Tomasz; Longcore, Joyce E.; Olesen, Jørgen; Kenrick, Paul; Edgecombe, Gregory D.

2016-01-01

The 407-million-year-old Rhynie Chert (Scotland) contains the most intact fossilised remains of an early land-based ecosystem including plants, arthropods, fungi and other microorganisms. Although most studies have focused on the terrestrial component, fossilised freshwater environments provide critical insights into fungal-algal interactions and the earliest continental branchiopod crustaceans. Here we report interactions between an enigmatic organism and an exquisitely preserved fungus. The fungal reproductive structures are intermixed with exceptionally well-preserved globular spiny structures interpreted as branchiopod resting eggs. Confocal laser scanning microscopy enabled us to reconstruct the fungus and its possible mode of nutrition, the affinity of the resting eggs, and their spatial associations. The new fungus (Cultoraquaticus trewini gen. et sp. nov) is attributed to Chytridiomycota based on its size, consistent formation of papillae, and the presence of an internal rhizoidal system. It is the most pristine fossil Chytridiomycota known, especially in terms of rhizoidal development and closely resembles living species in the Rhizophydiales. The spiny resting eggs are attributed to the crustacean Lepidocaris rhyniensis, dating branchiopod adaptation to life in ephemeral pools to the Early Devonian. The new fungal interaction suggests that, as in modern freshwater environments, chytrids were important to the mobilisation of nutrients in early aquatic foodwebs. PMID:27973602

Normal Development of the Perineuronal Net in Humans; In Patients with and without Epilepsy.

PubMed

Rogers, Stephanie L; Rankin-Gee, Elyse; Risbud, Rashmi M; Porter, Brenda E; Marsh, Eric D

2018-06-07

The perineuronal net (PN), a highly organized extracellular matrix structure, is believed to play an important role in synaptic function, including maturation and stabilization. In addition to its role in restricting plasticity, alterations in the PN are implicated in disorders such as epilepsy and schizophrenia. However, the time course of PN development is not known in humans. Therefore we set out to document the developmental timeline of the PN formation in humans in 14 frontal and hippocampal specimens from donors aged 27 days to 31 years old. Using immunohistochemistry and western blotting, we demonstrate that the PN begins to form as early as the second month of life but does not reach its robust, mature appearance until around 8 years of age, though aggrecan cleavage products are observed prior to this. A similar developmental time course was observed in specimens from epilepsy patients. Our data suggest that aggrecan is present early in development but the structured PN develops throughout early childhood, similar to what has been observed in rodents. This timeline provides information for future pathological studies on the role of the PN in disease and an additional parallel between human and rodent development. Copyright © 2018 IBRO. Published by Elsevier Ltd. All rights reserved.